-- dump date 20140619_081816 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_006089991.1 386593591 12707848 33..1436 1 NC_017625.1 KEGG: ssn:SSON_3652 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 1436 12707848 EcDH1_0001 Escherichia coli DH1 chromosomal replication initiator protein DnaA YP_006089991.1 33 D 536056 CDS YP_006089992.1 386593592 12707850 1441..2541 1 NC_017625.1 KEGG: sdy:SDY_4183 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2541 12707850 EcDH1_0002 Escherichia coli DH1 DNA polymerase III subunit beta YP_006089992.1 1441 D 536056 CDS YP_006089993.1 386593593 12707852 2541..3614 1 NC_017625.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: ssn:SSON_3650 recombination protein F; DNA replication and repair protein RecF 3614 12707852 EcDH1_0003 Escherichia coli DH1 DNA replication and repair protein RecF YP_006089993.1 2541 D 536056 CDS YP_006089994.1 386593594 12707854 3643..6057 1 NC_017625.1 KEGG: ssn:SSON_3649 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6057 12707854 EcDH1_0004 Escherichia coli DH1 DNA gyrase subunit B YP_006089994.1 3643 D 536056 CDS YP_006089995.1 386593595 12707888 6297..6695 1 NC_017625.1 PFAM: protein of unknown function DUF937; KEGG: ssn:SSON_3648 hypothetical protein; hypothetical protein 6695 12707888 EcDH1_0005 Escherichia coli DH1 hypothetical protein YP_006089995.1 6297 D 536056 CDS YP_006089996.1 386593596 12707890 6810..7622 1 NC_017625.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ssn:SSON_3647 predicted hydrolase; cof family hydrolase 7622 12707890 EcDH1_0006 Escherichia coli DH1 cof family hydrolase YP_006089996.1 6810 D 536056 CDS YP_006089997.1 386593597 12707892 complement(7668..8324) 1 NC_017625.1 KEGG: sfl:SF3768 hypothetical protein; hypothetical protein 8324 12707892 EcDH1_0007 Escherichia coli DH1 hypothetical protein YP_006089997.1 7668 R 536056 CDS YP_006089998.1 386593598 12707894 8602..9291 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sfx:S4002 regulator protein for dgo operon; GntR family transcriptional regulator 9291 12707894 EcDH1_0008 Escherichia coli DH1 GntR family transcriptional regulator YP_006089998.1 8602 D 536056 CDS YP_006089999.1 386593599 12707896 9288..10166 1 NC_017625.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ssn:SSON_3644 2-oxo-3-deoxygalactonate kinase; 2-dehydro-3-deoxygalactonokinase 10166 12707896 EcDH1_0009 Escherichia coli DH1 2-dehydro-3-deoxygalactonokinase YP_006089999.1 9288 D 536056 CDS YP_006090000.1 386593600 12703567 10150..10767 1 NC_017625.1 PFAM: KDPG and KHG aldolase; KEGG: ent:Ent638_0008 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; KDPG and KHG aldolase 10767 12703567 EcDH1_0010 Escherichia coli DH1 KDPG and KHG aldolase YP_006090000.1 10150 D 536056 CDS YP_006090001.1 386593601 12703568 10764..11912 1 NC_017625.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ent:Ent638_0009 galactonate dehydratase; mandelate racemase/muconate lactonizing protein 11912 12703568 EcDH1_0011 Escherichia coli DH1 mandelate racemase/muconate lactonizing protein YP_006090001.1 10764 D 536056 CDS YP_006090002.1 386593602 12703569 12032..13324 1 NC_017625.1 TIGRFAM: phosphoglycerate transporter; d-galactonate transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_3642 D-galactonate transport; d-galactonate transporter 13324 12703569 EcDH1_0012 Escherichia coli DH1 d-galactonate transporter YP_006090002.1 12032 D 536056 CDS YP_006090003.1 386593603 12703570 complement(13321..14385) 1 NC_017625.1 KEGG: ssn:SSON_3641 putative oxidoreductase; putative oxidoreductase 14385 12703570 EcDH1_0013 Escherichia coli DH1 putative oxidoreductase YP_006090003.1 13321 R 536056 CDS YP_006090004.1 386593604 12703571 14486..15700 1 NC_017625.1 KEGG: ssn:SSON_3640 hypothetical protein; hypothetical protein 15700 12703571 EcDH1_0014 Escherichia coli DH1 hypothetical protein YP_006090004.1 14486 D 536056 CDS YP_006090005.1 386593605 12703572 complement(15702..16034) 1 NC_017625.1 PFAM: protein of unknown function DUF1375; KEGG: sbc:SbBS512_E4231 hypothetical protein; hypothetical protein 16034 12703572 EcDH1_0015 Escherichia coli DH1 hypothetical protein YP_006090005.1 15702 R 536056 CDS YP_006090006.1 386593606 12703573 16340..16753 1 NC_017625.1 PFAM: heat shock protein Hsp20; KEGG: sdy:SDY_4173 heat shock protein IbpA; heat shock protein Hsp20 16753 12703573 EcDH1_0016 Escherichia coli DH1 heat shock protein Hsp20 YP_006090006.1 16340 D 536056 CDS YP_006090007.1 386593607 12703574 16865..17293 1 NC_017625.1 PFAM: heat shock protein Hsp20; KEGG: sdy:SDY_4172 heat shock chaperone IbpB; heat shock protein Hsp20 17293 12703574 EcDH1_0017 Escherichia coli DH1 heat shock protein Hsp20 YP_006090007.1 16865 D 536056 CDS YP_006090008.1 386593608 12703576 17489..19150 1 NC_017625.1 TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: sfx:S3992 hypothetical protein; YidE/YbjL duplication 19150 12703576 EcDH1_0019 Escherichia coli DH1 YidE/YbjL duplication YP_006090008.1 17489 D 536056 CDS YP_006090009.1 386593609 12703577 complement(19147..19863) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sdy:SDY_4170 putative transcriptional regulator; GntR family transcriptional regulator 19863 12703577 EcDH1_0020 Escherichia coli DH1 GntR family transcriptional regulator YP_006090009.1 19147 R 536056 CDS YP_006090010.1 386593610 12703580 complement(22586..23479) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sfx:S3987 putative AraC-type regulatory protein; AraC family transcriptional regulator 23479 12703580 EcDH1_0023 Escherichia coli DH1 AraC family transcriptional regulator YP_006090010.1 22586 R 536056 CDS YP_006090011.1 386593611 12703581 23646..25361 1 NC_017625.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sfv:SFV_3831 putative symporter YidK; SSS sodium solute transporter superfamily protein 25361 12703581 EcDH1_0024 Escherichia coli DH1 SSS sodium solute transporter superfamily protein YP_006090011.1 23646 D 536056 CDS YP_006090012.1 386593612 12703582 25358..26851 1 NC_017625.1 PFAM: sulfatase; KEGG: sdy:SDY_4162 putative sulfatase; sulfatase 26851 12703582 EcDH1_0025 Escherichia coli DH1 sulfatase YP_006090012.1 25358 D 536056 CDS YP_006090013.1 386593613 12703583 complement(26898..27347) 1 NC_017625.1 KEGG: ssn:SSON_3631 hypothetical protein; hypothetical protein 27347 12703583 EcDH1_0026 Escherichia coli DH1 hypothetical protein YP_006090013.1 26898 R 536056 CDS YP_006090014.1 386593614 12703584 27455..27802 1 NC_017625.1 PFAM: protein of unknown function DUF202; KEGG: sdy:SDY_4160 hypothetical protein; isocitrate dehydrogenase 27802 12703584 EcDH1_0027 Escherichia coli DH1 isocitrate dehydrogenase YP_006090014.1 27455 D 536056 CDS YP_006090015.1 386593615 12703585 27792..28154 1 NC_017625.1 KEGG: sbc:SbBS512_E4243 hypothetical protein; hypothetical protein 28154 12703585 EcDH1_0028 Escherichia coli DH1 hypothetical protein YP_006090015.1 27792 D 536056 CDS YP_006090016.1 386593616 12703586 28151..28648 1 NC_017625.1 KEGG: ssn:SSON_3628 putative transcriptional regulator; putative transcriptional regulator 28648 12703586 EcDH1_0029 Escherichia coli DH1 putative transcriptional regulator YP_006090016.1 28151 D 536056 CDS YP_006090017.1 386593617 12703587 complement(28656..29807) 1 NC_017625.1 TIGRFAM: multidrug/H+ antiporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_3627 multidrug resistance protein D; multidrug/H+ antiporter 29807 12703587 EcDH1_0030 Escherichia coli DH1 multidrug/H+ antiporter YP_006090017.1 28656 R 536056 CDS YP_006090018.1 386593618 12703588 complement(30497..30787) 1 NC_017625.1 KEGG: ses:SARI_03851 hypothetical protein; hypothetical protein 30787 12703588 EcDH1_0031 Escherichia coli DH1 hypothetical protein YP_006090018.1 30497 R 536056 CDS YP_006090019.1 386593619 12703589 30978..32666 1 NC_017625.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sbc:SbBS512_E4248 acetolactate synthase, large subunit, isozyme I; acetolactate synthase large subunit 32666 12703589 EcDH1_0032 Escherichia coli DH1 acetolactate synthase large subunit YP_006090019.1 30978 D 536056 CDS YP_006090020.1 386593620 12703590 32670..32960 1 NC_017625.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: ssn:SSON_3624 acetolactate synthase 1 regulatory subunit; acetolactate synthase small subunit 32960 12703590 EcDH1_0033 Escherichia coli DH1 acetolactate synthase small subunit YP_006090020.1 32670 D 536056 CDS YP_006090021.1 386593621 12703591 33036..33626 1 NC_017625.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sbc:SbBS512_E4250 transcriptional regulatory protein UhpA; LuxR family two component transcriptional regulator 33626 12703591 EcDH1_0034 Escherichia coli DH1 LuxR family two component transcriptional regulator YP_006090021.1 33036 D 536056 CDS YP_006090022.1 386593622 12703592 33626..35128 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; MASE1 domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sbo:SBO_3701 sensory histidine kinase UhpB; histidine kinase 35128 12703592 EcDH1_0035 Escherichia coli DH1 histidine kinase YP_006090022.1 33626 D 536056 CDS YP_006090023.1 386593623 12703593 35138..36457 1 NC_017625.1 TIGRFAM: phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_3702 regulatory protein UhpC; phosphoglycerate transporter 36457 12703593 EcDH1_0036 Escherichia coli DH1 phosphoglycerate transporter YP_006090023.1 35138 D 536056 CDS YP_006090024.1 386593624 12703594 36595..37986 1 NC_017625.1 TIGRFAM: phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_3703 sugar phosphate antiporter; phosphoglycerate transporter 37986 12703594 EcDH1_0037 Escherichia coli DH1 phosphoglycerate transporter YP_006090024.1 36595 D 536056 CDS YP_006090025.1 386593625 12703595 complement(38032..39798) 1 NC_017625.1 KEGG: ssn:SSON_3619 cryptic adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase; adenine deaminase 39798 12703595 EcDH1_0038 Escherichia coli DH1 adenine deaminase YP_006090025.1 38032 R 536056 CDS YP_006090026.1 386593626 12703596 39973..41307 1 NC_017625.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sbc:SbBS512_E4255 inorganic anion transporter, sulfate permease (SulP) family; xanthine/uracil/vitamin C permease 41307 12703596 EcDH1_0039 Escherichia coli DH1 xanthine/uracil/vitamin C permease YP_006090026.1 39973 D 536056 CDS YP_006090027.1 386593627 12703597 41360..41812 1 NC_017625.1 PFAM: protein of unknown function DUF1198; KEGG: sdy:SDY_4144 hypothetical protein; hypothetical protein 41812 12703597 EcDH1_0040 Escherichia coli DH1 hypothetical protein YP_006090027.1 41360 D 536056 CDS YP_006090028.1 386593628 12703598 41975..43213 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_3847 ribonucleoside transporter; major facilitator superfamily protein 43213 12703598 EcDH1_0041 Escherichia coli DH1 major facilitator superfamily protein YP_006090028.1 41975 D 536056 CDS YP_006090029.1 386593629 12703599 complement(43254..43547) 1 NC_017625.1 KEGG: sbo:SBO_3710 putative transport protein; putative transport protein 43547 12703599 EcDH1_0042 Escherichia coli DH1 putative transport protein YP_006090029.1 43254 R 536056 CDS YP_006090030.1 386593630 12703600 complement(43552..43671) 1 NC_017625.1 hypothetical protein 43671 12703600 EcDH1_0043 Escherichia coli DH1 hypothetical protein YP_006090030.1 43552 R 536056 CDS YP_006090031.1 386593631 12703601 43769..44587 1 NC_017625.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: sdy:SDY_4499 cytoplasmic membrane lipoprotein-28; lipoprotein 44587 12703601 EcDH1_0044 Escherichia coli DH1 lipoprotein YP_006090031.1 43769 D 536056 CDS YP_006090032.1 386593632 12703602 complement(44591..45514) 1 NC_017625.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sdy:SDY_4498 putative permease transporter; carboxylate/amino acid/amine transporter 45514 12703602 EcDH1_0045 Escherichia coli DH1 carboxylate/amino acid/amine transporter YP_006090032.1 44591 R 536056 CDS YP_006090033.1 386593633 12703603 complement(45625..46809) 1 NC_017625.1 TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4114 sugar efflux transporter C; sugar efflux transporter 46809 12703603 EcDH1_0046 Escherichia coli DH1 sugar efflux transporter YP_006090033.1 45625 R 536056 CDS YP_006090034.1 386593634 12703604 complement(47191..47337) 1 NC_017625.1 KEGG: ypb:YPTS_4098 hypothetical protein; hypothetical protein 47337 12703604 EcDH1_0047 Escherichia coli DH1 hypothetical protein YP_006090034.1 47191 R 536056 CDS YP_006090035.1 386593635 12703606 47833..49215 1 NC_017625.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sbc:SbBS512_E4108 sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family; sugar (Glycoside-Pentoside-Hexuronide) transporter 49215 12703606 EcDH1_0048 Escherichia coli DH1 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_006090035.1 47833 D 536056 CDS YP_006090036.1 386593636 12703607 49225..51543 1 NC_017625.1 PFAM: glycoside hydrolase family 31; KEGG: sfx:S4073 alpha-xylosidase YicI; glycoside hydrolase family protein 51543 12703607 EcDH1_0049 Escherichia coli DH1 glycoside hydrolase family protein YP_006090036.1 49225 D 536056 CDS YP_006090037.1 386593637 12703608 complement(51596..53305) 1 NC_017625.1 PFAM: AsmA family protein; KEGG: sfx:S4074 hypothetical protein; AsmA family protein 53305 12703608 EcDH1_0050 Escherichia coli DH1 AsmA family protein YP_006090037.1 51596 R 536056 CDS YP_006090038.1 386593638 12703609 complement(53426..54817) 1 NC_017625.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_3751 putative transport protein; uracil-xanthine permease 54817 12703609 EcDH1_0051 Escherichia coli DH1 uracil-xanthine permease YP_006090038.1 53426 R 536056 CDS YP_006090039.1 386593639 12703610 55097..56302 1 NC_017625.1 PFAM: sodium/glutamate symporter; KEGG: sdy:SDY_4085 glutamate transport; sodium/glutamate symporter 56302 12703610 EcDH1_0052 Escherichia coli DH1 sodium/glutamate symporter YP_006090039.1 55097 D 536056 CDS YP_006090040.1 386593640 12703611 complement(56471..58552) 1 NC_017625.1 KEGG: sfv:SFV_3877 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecG 58552 12703611 EcDH1_0053 Escherichia coli DH1 ATP-dependent DNA helicase RecG YP_006090040.1 56471 R 536056 CDS YP_006090041.1 386593641 12703612 complement(58558..59247) 1 NC_017625.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbo:SBO_3726 tRNA guanosine-2'-O-methyltransferase; tRNA guanosine-2'-O-methyltransferase 59247 12703612 EcDH1_0054 Escherichia coli DH1 tRNA guanosine-2'-O-methyltransferase YP_006090041.1 58558 R 536056 CDS YP_006090042.1 386593642 12703613 complement(59254..61362) 1 NC_017625.1 KEGG: sbc:SbBS512_E4101 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 61362 12703613 EcDH1_0055 Escherichia coli DH1 (p)ppGpp synthetase I SpoT/RelA YP_006090042.1 59254 R 536056 CDS YP_006090043.1 386593643 12703614 complement(61381..61656) 1 NC_017625.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: cko:CKO_05106 DNA-directed RNA polymerase subunit omega; DNA-directed RNA polymerase subunit omega 61656 12703614 EcDH1_0056 Escherichia coli DH1 DNA-directed RNA polymerase subunit omega YP_006090043.1 61381 R 536056 CDS YP_006090044.1 386593644 12703615 complement(61711..62334) 1 NC_017625.1 KEGG: sbc:SbBS512_E4099 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 62334 12703615 EcDH1_0057 Escherichia coli DH1 guanylate kinase YP_006090044.1 61711 R 536056 CDS YP_006090045.1 386593645 12703616 62592..64274 1 NC_017625.1 KEGG: ssn:SSON_3759 NAD-dependent DNA ligase LigB; PFAM: NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase; DNA ligase (NAD(+)) 64274 12703616 EcDH1_0058 Escherichia coli DH1 DNA ligase (NAD(+)) YP_006090045.1 62592 D 536056 CDS YP_006090046.1 386593646 12703617 complement(64271..64888) 1 NC_017625.1 PFAM: protein of unknown function UPF0126; KEGG: sdy:SDY_4077 hypothetical protein; hypothetical protein 64888 12703617 EcDH1_0059 Escherichia coli DH1 hypothetical protein YP_006090046.1 64271 R 536056 CDS YP_006090047.1 386593647 12703618 complement(65178..66002) 1 NC_017625.1 KEGG: sfv:SFV_3885 DNA-damage-inducible protein D; DNA-damage-inducible protein D 66002 12703618 EcDH1_0060 Escherichia coli DH1 DNA-damage-inducible protein D YP_006090047.1 65178 R 536056 CDS YP_006090048.1 386593648 12703619 complement(66223..67086) 1 NC_017625.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: ssn:SSON_3762 hypothetical protein; YicC domain-containing protein 67086 12703619 EcDH1_0061 Escherichia coli DH1 YicC domain-containing protein YP_006090048.1 66223 R 536056 CDS YP_006090049.1 386593649 12703620 67213..67929 1 NC_017625.1 KEGG: sbc:SbBS512_E4068 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH 67929 12703620 EcDH1_0062 Escherichia coli DH1 ribonuclease PH YP_006090049.1 67213 D 536056 CDS YP_006090050.1 386593650 12703621 67995..68636 1 NC_017625.1 KEGG: sfv:SFV_3888 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 68636 12703621 EcDH1_0063 Escherichia coli DH1 orotate phosphoribosyltransferase YP_006090050.1 67995 D 536056 CDS YP_006090051.1 386593651 12703622 complement(68673..69269) 1 NC_017625.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_4071 nucleoid occlusion protein; TetR family transcriptional regulator 69269 12703622 EcDH1_0064 Escherichia coli DH1 TetR family transcriptional regulator YP_006090051.1 68673 R 536056 CDS YP_006090052.1 386593652 12703623 complement(69376..69834) 1 NC_017625.1 KEGG: sdy:SDY_4070 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 69834 12703623 EcDH1_0065 Escherichia coli DH1 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_006090052.1 69376 R 536056 CDS YP_006090053.1 386593653 12703624 complement(69812..71032) 1 NC_017625.1 KEGG: sfx:S4090 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 71032 12703624 EcDH1_0066 Escherichia coli DH1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_006090053.1 69812 R 536056 CDS YP_006090054.1 386593654 12703625 71204..71872 1 NC_017625.1 PFAM: DNA repair protein RadC; KEGG: sbo:SBO_3640 DNA repair protein RadC; DNA repair protein RadC 71872 12703625 EcDH1_0067 Escherichia coli DH1 DNA repair protein RadC YP_006090054.1 71204 D 536056 CDS YP_006090055.1 386593655 12703626 72089..72325 1 NC_017625.1 PFAM: ribosomal protein L28; KEGG: kpn:KPN_03977 50S ribosomal protein L28; 50S ribosomal protein L28 72325 12703626 EcDH1_0068 Escherichia coli DH1 50S ribosomal protein L28 YP_006090055.1 72089 D 536056 CDS YP_006090056.1 386593656 12703627 72346..72513 1 NC_017625.1 PFAM: ribosomal protein L33; KEGG: cko:CKO_05094 50S ribosomal protein L33; 50S ribosomal protein L33 72513 12703627 EcDH1_0069 Escherichia coli DH1 50S ribosomal protein L33 YP_006090056.1 72346 D 536056 CDS YP_006090057.1 386593657 12703628 72611..73420 1 NC_017625.1 KEGG: sbc:SbBS512_E4060 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 73420 12703628 EcDH1_0070 Escherichia coli DH1 formamidopyrimidine-DNA glycosylase YP_006090057.1 72611 D 536056 CDS YP_006090058.1 386593658 12703629 complement(73459..73938) 1 NC_017625.1 KEGG: sbc:SbBS512_E4059 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 73938 12703629 EcDH1_0071 Escherichia coli DH1 pantetheine-phosphate adenylyltransferase YP_006090058.1 73459 R 536056 CDS YP_006090059.1 386593659 12703630 complement(73946..75223) 1 NC_017625.1 PFAM: glycosyl transferase group 1; Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: ssn:SSON_3774 3-deoxy-D-manno-octulosonic-acid transferase; Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 75223 12703630 EcDH1_0072 Escherichia coli DH1 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_006090059.1 73946 R 536056 CDS YP_006090060.1 386593660 12703631 75629..76699 1 NC_017625.1 TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: glycosyl transferase family 9; KEGG: sea:SeAg_B3940 putative lipopolysaccharide heptosyltransferase III; lipopolysaccharide heptosyltransferase III 76699 12703631 EcDH1_0073 Escherichia coli DH1 lipopolysaccharide heptosyltransferase III YP_006090060.1 75629 D 536056 CDS YP_006090061.1 386593661 12703632 76696..77820 1 NC_017625.1 PFAM: glycosyl transferase group 1; KEGG: sfv:SFV_3900 LPS alpha1,3-glucosyltransferase; group 1 glycosyl transferase 77820 12703632 EcDH1_0074 Escherichia coli DH1 group 1 glycosyl transferase YP_006090061.1 76696 D 536056 CDS YP_006090062.1 386593662 12703633 77813..78610 1 NC_017625.1 PFAM: lipopolysaccharide kinase; KEGG: sdy:SDY_4060 putative LPS biosynthesis enzyme; lipopolysaccharide kinase 78610 12703633 EcDH1_0075 Escherichia coli DH1 lipopolysaccharide kinase YP_006090062.1 77813 D 536056 CDS YP_006090063.1 386593663 12703634 78647..79582 1 NC_017625.1 KEGG: par:Psyc_1209 hypothetical protein; hypothetical protein 79582 12703634 EcDH1_0076 Escherichia coli DH1 hypothetical protein YP_006090063.1 78647 D 536056 CDS YP_006090064.1 386593664 12703635 79626..80705 1 NC_017625.1 PFAM: glycosyl transferase group 1; KEGG: sea:SeAg_B3937 lipopolysaccharide 1,6-galactosyltransferase; group 1 glycosyl transferase 80705 12703635 EcDH1_0077 Escherichia coli DH1 group 1 glycosyl transferase YP_006090064.1 79626 D 536056 CDS YP_006090065.1 386593665 12703636 80705..81724 1 NC_017625.1 PFAM: glycosyl transferase family 8; Glycosyl transferase family 8 domain protein; KEGG: ses:SARI_03923 hypothetical protein; Lipopolysaccharide 3-alpha-galactosyltransferase 81724 12703636 EcDH1_0078 Escherichia coli DH1 Lipopolysaccharide 3-alpha-galactosyltransferase YP_006090065.1 80705 D 536056 CDS YP_006090066.1 386593666 12703637 81764..82780 1 NC_017625.1 PFAM: glycosyl transferase family 8; Glycosyl transferase family 8 domain protein; KEGG: sek:SSPA3332 lipopolysaccharide 1,2-glucosyltransferase; Lipopolysaccharide glucosyltransferase I 82780 12703637 EcDH1_0079 Escherichia coli DH1 Lipopolysaccharide glucosyltransferase I YP_006090066.1 81764 D 536056 CDS YP_006090067.1 386593667 12703638 82798..83496 1 NC_017625.1 PFAM: lipopolysaccharide core biosynthesis protein; KEGG: sew:SeSA_A3915 lipopolysaccharide core biosynthesis protein RfaY; lipopolysaccharide core biosynthesis protein 83496 12703638 EcDH1_0080 Escherichia coli DH1 lipopolysaccharide core biosynthesis protein YP_006090067.1 82798 D 536056 CDS YP_006090068.1 386593668 12703639 83567..84418 1 NC_017625.1 KEGG: sec:SC3638 lipopolysaccharide core biosynthesis protein; lipopolysaccharide core biosynthesis protein 84418 12703639 EcDH1_0081 Escherichia coli DH1 lipopolysaccharide core biosynthesis protein YP_006090068.1 83567 D 536056 CDS YP_006090069.1 386593669 12703640 84451..85524 1 NC_017625.1 PFAM: glycosyl transferase family 9; KEGG: kpe:KPK_0128 putative lipopolysaccharide 1,2-N-acetylglucosaminetransferase RfaK; Lipopolysaccharide N-acetylglucosaminyltransferase 85524 12703640 EcDH1_0082 Escherichia coli DH1 Lipopolysaccharide N-acetylglucosaminyltransferase YP_006090069.1 84451 D 536056 CDS YP_006090070.1 386593670 12703641 complement(85556..86815) 1 NC_017625.1 PFAM: O-antigen polymerase; KEGG: cko:CKO_05081 hypothetical protein; O-antigen polymerase 86815 12703641 EcDH1_0083 Escherichia coli DH1 O-antigen polymerase YP_006090070.1 85556 R 536056 CDS YP_006090071.1 386593671 12703642 complement(86825..87784) 1 NC_017625.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: sdy:SDY_4053 ADP-heptose:LPS heptosyl transferase I; lipopolysaccharide heptosyltransferase I 87784 12703642 EcDH1_0084 Escherichia coli DH1 lipopolysaccharide heptosyltransferase I YP_006090071.1 86825 R 536056 CDS YP_006090072.1 386593672 12703643 complement(87788..88834) 1 NC_017625.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: sdy:SDY_4052 ADP-heptose:LPS heptosyltransferase II; lipopolysaccharide heptosyltransferase II 88834 12703643 EcDH1_0085 Escherichia coli DH1 lipopolysaccharide heptosyltransferase II YP_006090072.1 87788 R 536056 CDS YP_006090073.1 386593673 12703644 complement(88844..89776) 1 NC_017625.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: sdy:SDY_4051 ADP-L-glycero-D-mannoheptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 89776 12703644 EcDH1_0086 Escherichia coli DH1 ADP-L-glycero-D-manno-heptose-6-epimerase YP_006090073.1 88844 R 536056 CDS YP_006090074.1 386593674 12703645 90065..90937 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sfv:SFV_3910 hypothetical protein; hypothetical protein 90937 12703645 EcDH1_0087 Escherichia coli DH1 hypothetical protein YP_006090074.1 90065 D 536056 CDS YP_006090075.1 386593675 12703646 91212..92408 1 NC_017625.1 KEGG: sfx:S4110 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class V; glycine hydroxymethyltransferase; aminotransferase class I and II; aminotransferase class-III; 2-amino-3-ketobutyrate coenzyme A ligase 92408 12703646 EcDH1_0088 Escherichia coli DH1 2-amino-3-ketobutyrate coenzyme A ligase YP_006090075.1 91212 D 536056 CDS YP_006090076.1 386593676 12703647 92418..93443 1 NC_017625.1 TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbc:SbBS512_E4044 L-threonine 3-dehydrogenase; L-threonine 3-dehydrogenase 93443 12703647 EcDH1_0089 Escherichia coli DH1 L-threonine 3-dehydrogenase YP_006090076.1 92418 D 536056 CDS YP_006090077.1 386593677 12703648 93682..94716 1 NC_017625.1 PFAM: glycosyl transferase family 2; KEGG: sbc:SbBS512_E4042 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 94716 12703648 EcDH1_0090 Escherichia coli DH1 family 2 glycosyl transferase YP_006090077.1 93682 D 536056 CDS YP_006090078.1 386593678 12703649 complement(94703..95662) 1 NC_017625.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: sbc:SbBS512_E4043 polysaccharide deacetylase family protein; hypothetical protein 95662 12703649 EcDH1_0091 Escherichia coli DH1 hypothetical protein YP_006090078.1 94703 R 536056 CDS YP_006090079.1 386593679 12703650 complement(95666..96925) 1 NC_017625.1 PFAM: Peptidase M23; KEGG: ssn:SSON_3792 hypothetical protein; peptidase M23 96925 12703650 EcDH1_0092 Escherichia coli DH1 peptidase M23 YP_006090079.1 95666 R 536056 CDS YP_006090080.1 386593680 12703651 complement(96959..98503) 1 NC_017625.1 KEGG: sbc:SbBS512_E4040 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: metalloenzyme domain protein; BPG-independent PGAM domain protein; phosphoglycerate mutase 98503 12703651 EcDH1_0093 Escherichia coli DH1 phosphoglycerate mutase YP_006090080.1 96959 R 536056 CDS YP_006090081.1 386593681 12703652 98748..99179 1 NC_017625.1 PFAM: Rhodanese domain protein; KEGG: sbc:SbBS512_E4039 rhodanese domain protein; Rhodanese domain-containing protein 99179 12703652 EcDH1_0094 Escherichia coli DH1 Rhodanese domain-containing protein YP_006090081.1 98748 D 536056 CDS YP_006090082.1 386593682 12703653 99321..99572 1 NC_017625.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: sdy:SDY_4043 glutaredoxin 3; glutaredoxin 3 99572 12703653 EcDH1_0095 Escherichia coli DH1 glutaredoxin 3 YP_006090082.1 99321 D 536056 CDS YP_006090083.1 386593683 12703654 99635..100102 1 NC_017625.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: sbc:SbBS512_E4037 protein-export chaperone SecB; protein-export protein SecB 100102 12703654 EcDH1_0096 Escherichia coli DH1 protein-export protein SecB YP_006090083.1 99635 D 536056 CDS YP_006090084.1 386593684 12703655 100102..101121 1 NC_017625.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: sdy:SDY_4041 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 101121 12703655 EcDH1_0097 Escherichia coli DH1 glycerol-3-phosphate dehydrogenase YP_006090084.1 100102 D 536056 CDS YP_006090085.1 386593685 12703656 101201..102022 1 NC_017625.1 KEGG: sbc:SbBS512_E4035 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; serine O-acetyltransferase 102022 12703656 EcDH1_0098 Escherichia coli DH1 serine O-acetyltransferase YP_006090085.1 101201 D 536056 CDS YP_006090086.1 386593686 12703657 complement(102075..102548) 1 NC_017625.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbc:SbBS512_E4034 RNA methyltransferase, TrmH family, group 2; TrmH family RNA methyltransferase 102548 12703657 EcDH1_0099 Escherichia coli DH1 TrmH family RNA methyltransferase YP_006090086.1 102075 R 536056 CDS YP_006090087.1 386593687 12703658 complement(102746..103936) 1 NC_017625.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: sbc:SbBS512_E4031 L-lactate dehydrogenase (cytochrome); FMN-dependent alpha-hydroxy acid dehydrogenase 103936 12703658 EcDH1_0100 Escherichia coli DH1 FMN-dependent alpha-hydroxy acid dehydrogenase YP_006090087.1 102746 R 536056 CDS YP_006090088.1 386593688 12703659 complement(103933..104709) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbo:SBO_3609 DNA-binding transcriptional repressor; GntR family transcriptional regulator 104709 12703659 EcDH1_0101 Escherichia coli DH1 GntR family transcriptional regulator YP_006090088.1 103933 R 536056 CDS YP_006090089.1 386593689 12703660 complement(104709..106364) 1 NC_017625.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: sbc:SbBS512_E4029 L-lactate permease; L-lactate transport 106364 12703660 EcDH1_0102 Escherichia coli DH1 L-lactate transport YP_006090089.1 104709 R 536056 CDS YP_006090090.1 386593690 12703661 complement(106736..107098) 1 NC_017625.1 KEGG: sbc:SbBS512_E4020 hypothetical protein; hypothetical protein 107098 12703661 EcDH1_0103 Escherichia coli DH1 hypothetical protein YP_006090090.1 106736 R 536056 CDS YP_006090091.1 386593691 12703662 107383..107592 1 NC_017625.1 KEGG: sbc:SbBS512_E4019 hypothetical protein; hypothetical protein 107592 12703662 EcDH1_0104 Escherichia coli DH1 hypothetical protein YP_006090091.1 107383 D 536056 CDS YP_006090092.1 386593692 12703663 complement(107604..108191) 1 NC_017625.1 PFAM: Mannitol repressor; KEGG: sbc:SbBS512_E4018 mannitol operon repressor; mannitol repressor, MtlR 108191 12703663 EcDH1_0105 Escherichia coli DH1 mannitol repressor, MtlR YP_006090092.1 107604 R 536056 CDS YP_006090093.1 386593693 12703664 complement(108191..109339) 1 NC_017625.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfv:SFV_3937 mannitol-1-phosphate 5-dehydrogenase; mannitol dehydrogenase domain-containing protein 109339 12703664 EcDH1_0106 Escherichia coli DH1 mannitol dehydrogenase domain-containing protein YP_006090093.1 108191 R 536056 CDS YP_006090094.1 386593694 12703665 complement(109569..111482) 1 NC_017625.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sbc:SbBS512_E4016 PTS system, mannitol-specific IIABC component; PTS system mannitol-specific transporter subunit IIC 111482 12703665 EcDH1_0107 Escherichia coli DH1 PTS system mannitol-specific transporter subunit IIC YP_006090094.1 109569 R 536056 CDS YP_006090095.1 386593695 12703666 112019..112381 1 NC_017625.1 KEGG: ssn:SSON_3810 hypothetical protein; hypothetical protein 112381 12703666 EcDH1_0108 Escherichia coli DH1 hypothetical protein YP_006090095.1 112019 D 536056 CDS YP_006090096.1 386593696 12703667 112384..113520 1 NC_017625.1 PFAM: secretion protein HlyD family protein; KEGG: sbo:SBO_3595 hypothetical protein; secretion protein HlyD family protein 113520 12703667 EcDH1_0109 Escherichia coli DH1 secretion protein HlyD family protein YP_006090096.1 112384 D 536056 CDS YP_006090097.1 386593697 12703670 complement(115125..115586) 1 NC_017625.1 KEGG: sbo:SBO_3594 hypothetical protein; hypothetical protein 115586 12703670 EcDH1_0112 Escherichia coli DH1 hypothetical protein YP_006090097.1 115125 R 536056 CDS YP_006090098.1 386593698 12703672 complement(116584..117426) 1 NC_017625.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: amr:AM1_4076 hypothetical protein; PBS lyase HEAT domain-containing protein repeat-containing protein 117426 12703672 EcDH1_0114 Escherichia coli DH1 PBS lyase HEAT domain-containing protein repeat-containing protein YP_006090098.1 116584 R 536056 CDS YP_006090099.1 386593699 12703673 complement(117447..121580) 1 NC_017625.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 121580 12703673 EcDH1_0115 Escherichia coli DH1 YD repeat protein YP_006090099.1 117447 R 536056 CDS YP_006090100.1 386593700 12703674 121808..122416 1 NC_017625.1 PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E4007 glutathione S-transferase; glutathione S-transferase 122416 12703674 EcDH1_0116 Escherichia coli DH1 glutathione S-transferase YP_006090100.1 121808 D 536056 CDS YP_006090101.1 386593701 12703675 122514..123905 1 NC_017625.1 PFAM: L-seryl-tRNA selenium transferase; KEGG: sfx:S4139 selenocysteine synthase; L-seryl-tRNA(Sec) selenium transferase 123905 12703675 EcDH1_0117 Escherichia coli DH1 L-seryl-tRNA(Sec) selenium transferase YP_006090101.1 122514 D 536056 CDS YP_006090102.1 386593702 12703676 123902..125746 1 NC_017625.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: sfv:SFV_3943 selenocysteinyl-tRNA-specific translation factor; selenocysteine-specific translation elongation factor 125746 12703676 EcDH1_0118 Escherichia coli DH1 selenocysteine-specific translation elongation factor YP_006090102.1 123902 D 536056 CDS YP_006090103.1 386593703 12703677 125936..127087 1 NC_017625.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sbc:SbBS512_E4004 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 127087 12703677 EcDH1_0119 Escherichia coli DH1 iron-containing alcohol dehydrogenase YP_006090103.1 125936 D 536056 CDS YP_006090104.1 386593704 12703678 127252..128790 1 NC_017625.1 PFAM: Aldehyde Dehydrogenase; KEGG: sbc:SbBS512_E4003 aldehyde dehydrogenase B; aldehyde dehydrogenase 128790 12703678 EcDH1_0120 Escherichia coli DH1 aldehyde dehydrogenase YP_006090104.1 127252 D 536056 CDS YP_006090105.1 386593705 12703679 complement(129009..129173) 1 NC_017625.1 KEGG: sfv:SFV_3946 hypothetical protein; hypothetical protein 129173 12703679 EcDH1_0121 Escherichia coli DH1 hypothetical protein YP_006090105.1 129009 R 536056 CDS YP_006090106.1 386593706 12703680 129335..129658 1 NC_017625.1 KEGG: sfv:SFV_3947 hypothetical protein; hypothetical protein 129658 12703680 EcDH1_0122 Escherichia coli DH1 hypothetical protein YP_006090106.1 129335 D 536056 CDS YP_006090107.1 386593707 12703681 129664..130800 1 NC_017625.1 PFAM: secretion protein HlyD family protein; KEGG: sfv:SFV_3948 hypothetical protein; secretion protein HlyD family protein 130800 12703681 EcDH1_0123 Escherichia coli DH1 secretion protein HlyD family protein YP_006090107.1 129664 D 536056 CDS YP_006090108.1 386593708 12703682 complement(130797..131771) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_0144 LysR family transcriptional regulator; LysR family transcriptional regulator 131771 12703682 EcDH1_0124 Escherichia coli DH1 LysR family transcriptional regulator YP_006090108.1 130797 R 536056 CDS YP_006090109.1 386593709 12703683 131895..132635 1 NC_017625.1 PFAM: MltA-interacting MipA family protein; KEGG: sfv:SFV_3952 putative outer membrane protein; MltA-interacting MipA family protein 132635 12703683 EcDH1_0125 Escherichia coli DH1 MltA-interacting MipA family protein YP_006090109.1 131895 D 536056 CDS YP_006090110.1 386593710 12703685 complement(132982..133677) 1 NC_017625.1 KEGG: sfv:SFV_3956 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; L-ribulose-5-phosphate 4-epimerase 133677 12703685 EcDH1_0127 Escherichia coli DH1 L-ribulose-5-phosphate 4-epimerase YP_006090110.1 132982 R 536056 CDS YP_006090111.1 386593711 12703686 complement(133671..134531) 1 NC_017625.1 KEGG: sfv:SFV_3957 putative L-xylulose 5-phosphate 3-epimerase; TIGRFAM: hexulose-6-phosphate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hexulose-6-phosphate isomerase 134531 12703686 EcDH1_0128 Escherichia coli DH1 hexulose-6-phosphate isomerase YP_006090111.1 133671 R 536056 CDS YP_006090112.1 386593712 12703687 complement(134524..135186) 1 NC_017625.1 PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sfv:SFV_3958 3-keto-L-gulonate-6-phosphate decarboxylase; 3-dehydro-L-gulonate-6-phosphate decarboxylase 135186 12703687 EcDH1_0129 Escherichia coli DH1 3-dehydro-L-gulonate-6-phosphate decarboxylase YP_006090112.1 134524 R 536056 CDS YP_006090113.1 386593713 12703688 complement(135183..136679) 1 NC_017625.1 PFAM: carbohydrate kinase FGGY; KEGG: sfv:SFV_3959 L-xylulose kinase, cryptic; carbohydrate kinase FGGY 136679 12703688 EcDH1_0130 Escherichia coli DH1 carbohydrate kinase FGGY YP_006090113.1 135183 R 536056 CDS YP_006090114.1 386593714 12703689 complement(136683..137669) 1 NC_017625.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfv:SFV_3960 putative solute-binding transport protein; TRAP dicarboxylate transporter subunit DctP 137669 12703689 EcDH1_0131 Escherichia coli DH1 TRAP dicarboxylate transporter subunit DctP YP_006090114.1 136683 R 536056 CDS YP_006090115.1 386593715 12703690 complement(137682..138959) 1 NC_017625.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sfv:SFV_3961 hypothetical protein; TRAP dicarboxylate transporter subunit DctM 138959 12703690 EcDH1_0132 Escherichia coli DH1 TRAP dicarboxylate transporter subunit DctM YP_006090115.1 137682 R 536056 CDS YP_006090116.1 386593716 12703691 complement(138962..139435) 1 NC_017625.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sbc:SbBS512_E3945 TRAP transporter, DctQ-like membrane protein; tripartite AtP-independent periplasmic transporter subunit DctQ 139435 12703691 EcDH1_0133 Escherichia coli DH1 tripartite AtP-independent periplasmic transporter subunit DctQ YP_006090116.1 138962 R 536056 CDS YP_006090117.1 386593717 12703692 complement(139553..140020) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: cko:CKO_05034 hypothetical protein; hypothetical protein 140020 12703692 EcDH1_0134 Escherichia coli DH1 hypothetical protein YP_006090117.1 139553 R 536056 CDS YP_006090118.1 386593718 12703693 complement(140032..141030) 1 NC_017625.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: sfx:S4150 2,3-diketo-L-gulonate reductase; malate/L-lactate dehydrogenase 141030 12703693 EcDH1_0135 Escherichia coli DH1 malate/L-lactate dehydrogenase YP_006090118.1 140032 R 536056 CDS YP_006090119.1 386593719 12703694 141231..142079 1 NC_017625.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sbo:SBO_3582 putative regulator; IclR family transcriptional regulator 142079 12703694 EcDH1_0136 Escherichia coli DH1 IclR family transcriptional regulator YP_006090119.1 141231 D 536056 CDS YP_006090120.1 386593720 12703695 142181..142654 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_3581 hypothetical protein; 4Fe-4S ferredoxin 142654 12703695 EcDH1_0137 Escherichia coli DH1 4Fe-4S ferredoxin YP_006090120.1 142181 D 536056 CDS YP_006090121.1 386593721 12703696 complement(142805..144058) 1 NC_017625.1 PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E3950 putative valine--pyruvate aminotransferase; class I and II aminotransferase 144058 12703696 EcDH1_0138 Escherichia coli DH1 class I and II aminotransferase YP_006090121.1 142805 R 536056 CDS YP_006090122.1 386593722 12703697 complement(144236..146266) 1 NC_017625.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sfx:S4154 periplasmic alpha-amylase precursor; alpha amylase 146266 12703697 EcDH1_0139 Escherichia coli DH1 alpha amylase YP_006090122.1 144236 R 536056 CDS YP_006090123.1 386593723 12703698 146586..147410 1 NC_017625.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: sbc:SbBS512_E3952 protein bax; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 147410 12703698 EcDH1_0140 Escherichia coli DH1 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_006090123.1 146586 D 536056 CDS YP_006090124.1 386593724 12703699 complement(147606..148784) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E3953 xylose operon regulatory protein; AraC family transcriptional regulator 148784 12703699 EcDH1_0141 Escherichia coli DH1 AraC family transcriptional regulator YP_006090124.1 147606 R 536056 CDS YP_006090125.1 386593725 12703700 complement(148862..150043) 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3954 D-xylose ABC transporter, permease protein; monosaccharide-transporting ATPase 150043 12703700 EcDH1_0142 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006090125.1 148862 R 536056 CDS YP_006090126.1 386593726 12703701 complement(150021..151562) 1 NC_017625.1 KEGG: sbo:SBO_3575 putative ATP-binding protein of xylose transport system; TIGRFAM: D-xylose ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; D-xylose ABC transporter ATPase 151562 12703701 EcDH1_0143 Escherichia coli DH1 D-xylose ABC transporter ATPase YP_006090126.1 150021 R 536056 CDS YP_006090127.1 386593727 12703702 complement(151640..152632) 1 NC_017625.1 KEGG: sfv:SFV_3974 D-xylose transporter subunit XylF; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; D-xylose ABC transporter periplasmic substrate-binding protein 152632 12703702 EcDH1_0144 Escherichia coli DH1 D-xylose ABC transporter periplasmic substrate-binding protein YP_006090127.1 151640 R 536056 CDS YP_006090128.1 386593728 12703703 152998..154320 1 NC_017625.1 KEGG: sbc:SbBS512_E3959 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase 154320 12703703 EcDH1_0145 Escherichia coli DH1 xylose isomerase YP_006090128.1 152998 D 536056 CDS YP_006090129.1 386593729 12703704 154392..155846 1 NC_017625.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: sfv:SFV_3976 xylulokinase; xylulokinase 155846 12703704 EcDH1_0146 Escherichia coli DH1 xylulokinase YP_006090129.1 154392 D 536056 CDS YP_006090130.1 386593730 12703705 156015..156356 1 NC_017625.1 PFAM: YiaAB two helix domain protein; KEGG: sbo:SBO_3571 hypothetical protein; YiaAB two helix domain-containing protein 156356 12703705 EcDH1_0147 Escherichia coli DH1 YiaAB two helix domain-containing protein YP_006090130.1 156015 D 536056 CDS YP_006090131.1 386593731 12703706 156402..156839 1 NC_017625.1 PFAM: YiaAB two helix domain protein; KEGG: sbo:SBO_3570 hypothetical protein; YiaAB two helix domain-containing protein 156839 12703706 EcDH1_0148 Escherichia coli DH1 YiaAB two helix domain-containing protein YP_006090131.1 156402 D 536056 CDS YP_006090132.1 386593732 12703707 complement(156881..157876) 1 NC_017625.1 PFAM: acyltransferase 3; KEGG: sbo:SBO_3569 hypothetical protein; acyltransferase 3 157876 12703707 EcDH1_0149 Escherichia coli DH1 acyltransferase 3 YP_006090132.1 156881 R 536056 CDS YP_006090133.1 386593733 12703708 158051..158350 1 NC_017625.1 KEGG: sbc:SbBS512_E3964 hypothetical protein; hypothetical protein 158350 12703708 EcDH1_0150 Escherichia coli DH1 hypothetical protein YP_006090133.1 158051 D 536056 CDS YP_006090134.1 386593734 12703709 158445..159356 1 NC_017625.1 KEGG: cko:CKO_05016 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha 159356 12703709 EcDH1_0151 Escherichia coli DH1 glycyl-tRNA synthetase subunit alpha YP_006090134.1 158445 D 536056 CDS YP_006090135.1 386593735 12703710 159366..161435 1 NC_017625.1 KEGG: ssn:SSON_3830 glycyl-tRNA synthetase subunit beta; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 161435 12703710 EcDH1_0152 Escherichia coli DH1 glycyl-tRNA synthetase subunit beta YP_006090135.1 159366 D 536056 CDS YP_006090136.1 386593736 12703711 complement(161714..162565) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: sfv:SFV_3530 IS150 ORF2; integrase catalytic subunit 162565 12703711 EcDH1_0153 Escherichia coli DH1 integrase catalytic subunit YP_006090136.1 161714 R 536056 CDS YP_006090137.1 386593737 12703712 complement(162562..163083) 1 NC_017625.1 KEGG: sfx:S1483 IS103 orf; IS103 orf 163083 12703712 EcDH1_0154 Escherichia coli DH1 IS103 orf YP_006090137.1 162562 R 536056 CDS YP_006090138.1 386593738 12703713 163163..163315 1 NC_017625.1 PFAM: Hok/gef cell toxic protein; KEGG: ssn:SSON_3831 small toxic polypeptide; Hok/gef cell toxic protein 163315 12703713 EcDH1_0155 Escherichia coli DH1 Hok/gef cell toxic protein YP_006090138.1 163163 D 536056 CDS YP_006090139.1 386593739 12703714 complement(163502..163714) 1 NC_017625.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cko:CKO_05012 major cold shock protein; cold-shock protein 163714 12703714 EcDH1_0156 Escherichia coli DH1 cold-shock protein YP_006090139.1 163502 R 536056 CDS YP_006090140.1 386593740 12703715 complement(163995..164285) 1 NC_017625.1 SMART: helix-turn-helix domain protein; KEGG: sdy:SDY_4348 putative transcriptional regulator; XRE family transcriptional regulator 164285 12703715 EcDH1_0157 Escherichia coli DH1 XRE family transcriptional regulator YP_006090140.1 163995 R 536056 CDS YP_006090141.1 386593741 12703716 164719..165429 1 NC_017625.1 KEGG: sdy:SDY_4349 hypothetical protein; hypothetical protein 165429 12703716 EcDH1_0158 Escherichia coli DH1 hypothetical protein YP_006090141.1 164719 D 536056 CDS YP_006090142.1 386593742 12703717 complement(165479..166453) 1 NC_017625.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E3973 2-ketogluconate reductase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 166453 12703717 EcDH1_0159 Escherichia coli DH1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_006090142.1 165479 R 536056 CDS YP_006090143.1 386593743 12703718 complement(166557..167216) 1 NC_017625.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: ssn:SSON_3836 predicted outer membrane lipoprotein; OmpA/MotB domain-containing protein 167216 12703718 EcDH1_0160 Escherichia coli DH1 OmpA/MotB domain-containing protein YP_006090143.1 166557 R 536056 CDS YP_006090144.1 386593744 12703719 167369..169702 1 NC_017625.1 TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sbc:SbBS512_E3976 biotin sulfoxide reductase; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 169702 12703719 EcDH1_0161 Escherichia coli DH1 molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_006090144.1 167369 D 536056 CDS YP_006090145.1 386593745 12703720 complement(169671..170111) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E3975 acetyltransferase, GNAT family; N-acetyltransferase GCN5 170111 12703720 EcDH1_0162 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006090145.1 169671 R 536056 CDS YP_006090146.1 386593746 12703721 complement(170108..170671) 1 NC_017625.1 KEGG: ssn:SSON_3841 3-methyl-adenine DNA glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 170671 12703721 EcDH1_0163 Escherichia coli DH1 DNA-3-methyladenine glycosylase I YP_006090146.1 170108 R 536056 CDS YP_006090147.1 386593747 12703722 170829..171527 1 NC_017625.1 KEGG: sbc:SbBS512_E3978 hypothetical protein; hypothetical protein 171527 12703722 EcDH1_0164 Escherichia coli DH1 hypothetical protein YP_006090147.1 170829 D 536056 CDS YP_006090148.1 386593748 12703723 171756..172964 1 NC_017625.1 TIGRFAM: Oxalate/Formate Antiporter; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_3843 putative resistance protein; Oxalate/Formate Antiporter 172964 12703723 EcDH1_0165 Escherichia coli DH1 Oxalate/Formate Antiporter YP_006090148.1 171756 D 536056 CDS YP_006090149.1 386593749 12703724 173288..174979 1 NC_017625.1 PFAM: sulfatase; KEGG: sbc:SbBS512_E3983 membrane-associated sulfatase; sulfatase 174979 12703724 EcDH1_0166 Escherichia coli DH1 sulfatase YP_006090149.1 173288 D 536056 CDS YP_006090150.1 386593750 12703726 175288..175554 1 NC_017625.1 hypothetical protein 175554 12703726 EcDH1_0167 Escherichia coli DH1 hypothetical protein YP_006090150.1 175288 D 536056 CDS YP_006090151.1 386593751 12703727 176058..177665 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: sdy:SDY_4567 dipeptide transport protein; 4-phytase 177665 12703727 EcDH1_0168 Escherichia coli DH1 4-phytase YP_006090151.1 176058 D 536056 CDS YP_006090152.1 386593752 12703728 177973..178992 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_4566 dipeptide transporter permease DppB; alkaline phosphatase 178992 12703728 EcDH1_0169 Escherichia coli DH1 alkaline phosphatase YP_006090152.1 177973 D 536056 CDS YP_006090153.1 386593753 12703729 179002..179904 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_3541 dipeptide transporter; binding-protein-dependent transport system inner membrane protein 179904 12703729 EcDH1_0170 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006090153.1 179002 D 536056 CDS YP_006090154.1 386593754 12703730 179915..180898 1 NC_017625.1 KEGG: sfv:SFV_3546 dipeptide transporter ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 180898 12703730 EcDH1_0171 Escherichia coli DH1 oligopeptide/dipeptide ABC transporter ATPase YP_006090154.1 179915 D 536056 CDS YP_006090155.1 386593755 12703731 180895..181899 1 NC_017625.1 KEGG: sbc:SbBS512_E3991 dipeptide ABC transporter, ATP-binding protein DppF; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 181899 12703731 EcDH1_0172 Escherichia coli DH1 oligopeptide/dipeptide ABC transporter ATPase YP_006090155.1 180895 D 536056 CDS YP_006090156.1 386593756 12703732 complement(181929..183200) 1 NC_017625.1 TIGRFAM: serine transporter; KEGG: ssn:SSON_3851 putative transporter protein; serine transporter 183200 12703732 EcDH1_0173 Escherichia coli DH1 serine transporter YP_006090156.1 181929 R 536056 CDS YP_006090157.1 386593757 12703733 183508..183783 1 NC_017625.1 KEGG: sfl:SF3572 hypothetical protein; hypothetical protein 183783 12703733 EcDH1_0174 Escherichia coli DH1 hypothetical protein YP_006090157.1 183508 D 536056 CDS YP_006090158.1 386593758 12703734 complement(183870..185549) 1 NC_017625.1 TIGRFAM: cellulose synthase operon protein YhjU; KEGG: sfv:SFV_3549 hypothetical protein; cellulose synthase operon protein YhjU 185549 12703734 EcDH1_0175 Escherichia coli DH1 cellulose synthase operon protein YhjU YP_006090158.1 183870 R 536056 CDS YP_006090159.1 386593759 12703735 complement(185546..185737) 1 NC_017625.1 KEGG: sbc:SbBS512_E3999 cellulose biosynthesis protein BcsF; cellulose biosynthesis protein BcsF 185737 12703735 EcDH1_0176 Escherichia coli DH1 cellulose biosynthesis protein BcsF YP_006090159.1 185546 R 536056 CDS YP_006090160.1 386593760 12703736 complement(185734..187293) 1 NC_017625.1 TIGRFAM: cellulose biosynthesis protein BcsE; KEGG: ssn:SSON_3854 putative protease; cellulose biosynthesis protein BcsE 187293 12703736 EcDH1_0177 Escherichia coli DH1 cellulose biosynthesis protein BcsE YP_006090160.1 185734 R 536056 CDS YP_006090161.1 386593761 12703737 187578..187766 1 NC_017625.1 KEGG: sbo:SBO_3534 hypothetical protein; hypothetical protein 187766 12703737 EcDH1_0178 Escherichia coli DH1 hypothetical protein YP_006090161.1 187578 D 536056 CDS YP_006090162.1 386593762 12703738 187802..188530 1 NC_017625.1 TIGRFAM: cellulose synthase operon protein YhjQ; PFAM: YhjQ family protein; KEGG: sbc:SbBS512_E3940 YhjQ protein; cellulose synthase operon protein YhjQ 188530 12703738 EcDH1_0179 Escherichia coli DH1 cellulose synthase operon protein YhjQ YP_006090162.1 187802 D 536056 CDS YP_006090163.1 386593763 12703739 188527..191145 1 NC_017625.1 KEGG: sdy:SDY_4553 cellulose synthase catalytic subunit; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; cellulose synthase catalytic subunit 191145 12703739 EcDH1_0180 Escherichia coli DH1 cellulose synthase catalytic subunit YP_006090163.1 188527 D 536056 CDS YP_006090164.1 386593764 12703740 191192..193495 1 NC_017625.1 PFAM: cellulose synthase subunit B; KEGG: sbo:SBO_3531 cellulose synthase regulator protein; cellulose synthase subunit B 193495 12703740 EcDH1_0181 Escherichia coli DH1 cellulose synthase subunit B YP_006090164.1 191192 D 536056 CDS YP_006090165.1 386593765 12703741 193502..194608 1 NC_017625.1 PFAM: glycoside hydrolase family 8; KEGG: sbo:SBO_3530 endo-1,4-D-glucanase; cellulase 194608 12703741 EcDH1_0182 Escherichia coli DH1 cellulase YP_006090165.1 193502 D 536056 CDS YP_006090166.1 386593766 12703742 194590..198063 1 NC_017625.1 PFAM: TPR repeat-containing protein; cellulose synthase operon C domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sbo:SBO_3529 putative oxidoreductase subunit; cellulose synthase operon C domain-containing protein 198063 12703742 EcDH1_0183 Escherichia coli DH1 cellulose synthase operon C domain-containing protein YP_006090166.1 194590 D 536056 CDS YP_006090167.1 386593767 12703743 198184..200133 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sbc:SbBS512_E3935 putative diguanylate cyclase; diguanylate cyclase/phosphodiesterase with extracellular sensor 200133 12703743 EcDH1_0184 Escherichia coli DH1 diguanylate cyclase/phosphodiesterase with extracellular sensor YP_006090167.1 198184 D 536056 CDS YP_006090168.1 386593768 12703744 200316..201602 1 NC_017625.1 PFAM: sodium:dicarboxylate symporter; KEGG: sbc:SbBS512_E3934 aerobic C4-dicarboxylate transport protein; sodium:dicarboxylate symporter 201602 12703744 EcDH1_0185 Escherichia coli DH1 sodium:dicarboxylate symporter YP_006090168.1 200316 D 536056 CDS YP_006090169.1 386593769 12703745 201823..203319 1 NC_017625.1 PFAM: peptidase M16 domain protein; KEGG: sdy:SDY_4547 hypothetical protein; peptidase M16 domain-containing protein 203319 12703745 EcDH1_0186 Escherichia coli DH1 peptidase M16 domain-containing protein YP_006090169.1 201823 D 536056 CDS YP_006090170.1 386593770 12703746 complement(203415..204344) 1 NC_017625.1 PFAM: PfkB domain protein; KEGG: ssn:SSON_3865 ketodeoxygluconokinase; PfkB domain-containing protein 204344 12703746 EcDH1_0187 Escherichia coli DH1 PfkB domain-containing protein YP_006090170.1 203415 R 536056 CDS YP_006090171.1 386593771 12703747 204576..205343 1 NC_017625.1 PFAM: EAL domain protein; KEGG: sdy:SDY_4545 EAL domain containing protein involved in flagellar function; diguanylate phosphodiesterase 205343 12703747 EcDH1_0188 Escherichia coli DH1 diguanylate phosphodiesterase YP_006090171.1 204576 D 536056 CDS YP_006090172.1 386593772 12703748 205398..207473 1 NC_017625.1 PFAM: AsmA family protein; KEGG: sbo:SBO_3523 hypothetical protein; AsmA family protein 207473 12703748 EcDH1_0189 Escherichia coli DH1 AsmA family protein YP_006090172.1 205398 D 536056 CDS YP_006090173.1 386593773 12703749 complement(207655..208977) 1 NC_017625.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_3868 putative transport protein; metabolite/H+ symporter, major facilitator superfamily (MFS) 208977 12703749 EcDH1_0190 Escherichia coli DH1 metabolite/H+ symporter, major facilitator superfamily (MFS) YP_006090173.1 207655 R 536056 CDS YP_006090174.1 386593774 12703750 complement(209388..210401) 1 NC_017625.1 TIGRFAM: ribonuclease; PFAM: ribonuclease BN; KEGG: sbc:SbBS512_E3927 putative ribonuclease; ribonuclease 210401 12703750 EcDH1_0191 Escherichia coli DH1 ribonuclease YP_006090174.1 209388 R 536056 CDS YP_006090175.1 386593775 12703751 complement(210450..211421) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_3520 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 211421 12703751 EcDH1_0192 Escherichia coli DH1 LysR family transcriptional regulator YP_006090175.1 210450 R 536056 CDS YP_006090176.1 386593776 12703752 211869..212471 1 NC_017625.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: sbc:SbBS512_E3925 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 212471 12703752 EcDH1_0193 Escherichia coli DH1 LuxR family transcriptional regulator YP_006090176.1 211869 D 536056 CDS YP_006090177.1 386593777 12703753 complement(212522..214171) 1 NC_017625.1 PFAM: glycoside hydrolase family 37; KEGG: sbc:SbBS512_E3922 cytoplasmic trehalase TreF; Alpha,alpha-trehalase 214171 12703753 EcDH1_0194 Escherichia coli DH1 Alpha,alpha-trehalase YP_006090177.1 212522 R 536056 CDS YP_006090178.1 386593778 12703754 214575..215972 1 NC_017625.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: sbo:SBO_3517 putative cytochrome c peroxidase; cytochrome-c peroxidase 215972 12703754 EcDH1_0195 Escherichia coli DH1 cytochrome-c peroxidase YP_006090178.1 214575 D 536056 CDS YP_006090179.1 386593779 12703755 216183..217583 1 NC_017625.1 TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: sbo:SBO_3516 glutamate decarboxylase isozyme; glutamate decarboxylase 217583 12703755 EcDH1_0196 Escherichia coli DH1 glutamate decarboxylase YP_006090179.1 216183 D 536056 CDS YP_006090180.1 386593780 12703756 217953..218777 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E3914 transcriptional regulator GadX; AraC family transcriptional regulator 218777 12703756 EcDH1_0197 Escherichia coli DH1 AraC family transcriptional regulator YP_006090180.1 217953 D 536056 CDS YP_006090181.1 386593781 12703757 219145..219873 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sfv:SFV_3987 putative AraC-type regulatory protein; AraC family transcriptional regulator 219873 12703757 EcDH1_0198 Escherichia coli DH1 AraC family transcriptional regulator YP_006090181.1 219145 D 536056 CDS YP_006090182.1 386593782 12703758 complement(220236..223349) 1 NC_017625.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sdy:SDY_3537 putative transport system permease protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 223349 12703758 EcDH1_0199 Escherichia coli DH1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_006090182.1 220236 R 536056 CDS YP_006090183.1 386593783 12703759 complement(223374..224531) 1 NC_017625.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbo:SBO_3512 multidrug resistance efflux protein MdtE; RND family efflux transporter MFP subunit 224531 12703759 EcDH1_0200 Escherichia coli DH1 RND family efflux transporter MFP subunit YP_006090183.1 223374 R 536056 CDS YP_006090184.1 386593784 12703760 224591..224869 1 NC_017625.1 hypothetical protein 224869 12703760 EcDH1_0201 Escherichia coli DH1 hypothetical protein YP_006090184.1 224591 D 536056 CDS YP_006090185.1 386593785 12703761 complement(224870..225397) 1 NC_017625.1 KEGG: ssn:SSON_3574 hypothetical protein; LuxR family transcriptional regulator 225397 12703761 EcDH1_0202 Escherichia coli DH1 LuxR family transcriptional regulator YP_006090185.1 224870 R 536056 CDS YP_006090186.1 386593786 12703762 complement(226196..226768) 1 NC_017625.1 KEGG: sbc:SbBS512_E3909 putative HdeD protein; putative HdeD protein 226768 12703762 EcDH1_0203 Escherichia coli DH1 putative HdeD protein YP_006090186.1 226196 R 536056 CDS YP_006090187.1 386593787 12703763 227023..227355 1 NC_017625.1 PFAM: HNS-dependent expression A; KEGG: sdy:SDY_3543 stress-response and acid-resistance protein; HNS-dependent expression A 227355 12703763 EcDH1_0204 Escherichia coli DH1 HNS-dependent expression A YP_006090187.1 227023 D 536056 CDS YP_006090188.1 386593788 12703764 227459..227797 1 NC_017625.1 KEGG: sbc:SbBS512_E3907 HdeB protein; HdeB protein 227797 12703764 EcDH1_0205 Escherichia coli DH1 HdeB protein YP_006090188.1 227459 D 536056 CDS YP_006090189.1 386593789 12703765 227933..228508 1 NC_017625.1 PFAM: MgtC/SapB transporter; KEGG: sbc:SbBS512_E3906 putative Mg2+ transporter-C (MgtC) family protein; MgtC/SapB transporter 228508 12703765 EcDH1_0206 Escherichia coli DH1 MgtC/SapB transporter YP_006090189.1 227933 D 536056 CDS YP_006090190.1 386593790 12703766 complement(228550..229080) 1 NC_017625.1 PFAM: regulatory protein LuxR; KEGG: ssn:SSON_3579 hypothetical protein; LuxR family transcriptional regulator 229080 12703766 EcDH1_0207 Escherichia coli DH1 LuxR family transcriptional regulator YP_006090190.1 228550 R 536056 CDS YP_006090191.1 386593791 12703767 complement(229236..229802) 1 NC_017625.1 TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: sbc:SbBS512_E3904 outer membrane lipoprotein, Slp family; outer membrane lipoprotein, Slp family 229802 12703767 EcDH1_0208 Escherichia coli DH1 outer membrane lipoprotein, Slp family YP_006090191.1 229236 R 536056 CDS YP_006090192.1 386593792 12703769 230601..231581 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 231581 12703769 EcDH1_0210 Escherichia coli DH1 transposase IS4 family protein YP_006090192.1 230601 D 536056 CDS YP_006090193.1 386593793 12703770 complement(233101..233526) 1 NC_017625.1 KEGG: sbc:SbBS512_E3818 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 233526 12703770 EcDH1_0211 Escherichia coli DH1 arsenate reductase YP_006090193.1 233101 R 536056 CDS YP_006090194.1 386593794 12703771 complement(233539..234828) 1 NC_017625.1 TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein; arsenical pump membrane protein 234828 12703771 EcDH1_0212 Escherichia coli DH1 arsenical pump membrane protein YP_006090194.1 233539 R 536056 CDS YP_006090195.1 386593795 12703772 complement(234882..235235) 1 NC_017625.1 PFAM: regulatory protein ArsR; KEGG: ssn:SSON_3736 DNA-binding transcriptional repressor; ArsR family transcriptional regulator 235235 12703772 EcDH1_0213 Escherichia coli DH1 ArsR family transcriptional regulator YP_006090195.1 234882 R 536056 CDS YP_006090196.1 386593796 12703773 235930..236058 1 NC_017625.1 KEGG: sbc:SbBS512_E3821 hypothetical protein; hypothetical protein 236058 12703773 EcDH1_0214 Escherichia coli DH1 hypothetical protein YP_006090196.1 235930 D 536056 CDS YP_006090197.1 386593797 12703774 complement(236112..237464) 1 NC_017625.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ssn:SSON_3735 glutathione reductase; glutathione-disulfide reductase 237464 12703774 EcDH1_0215 Escherichia coli DH1 glutathione-disulfide reductase YP_006090197.1 236112 R 536056 CDS YP_006090198.1 386593798 12703775 complement(237536..238378) 1 NC_017625.1 PFAM: protein of unknown function DUF519; KEGG: sbo:SBO_3497 hypothetical protein; hypothetical protein 238378 12703775 EcDH1_0216 Escherichia coli DH1 hypothetical protein YP_006090198.1 237536 R 536056 CDS YP_006090199.1 386593799 12703776 238581..240623 1 NC_017625.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sbc:SbBS512_E3824 oligopeptidase A; oligopeptidase A 240623 12703776 EcDH1_0217 Escherichia coli DH1 oligopeptidase A YP_006090199.1 238581 D 536056 CDS YP_006090200.1 386593800 12703777 240631..241383 1 NC_017625.1 PFAM: protein of unknown function DUF548; KEGG: ssn:SSON_3732 putative methyltransferase; hypothetical protein 241383 12703777 EcDH1_0218 Escherichia coli DH1 hypothetical protein YP_006090200.1 240631 D 536056 CDS YP_006090201.1 386593801 12703778 complement(241432..242901) 1 NC_017625.1 KEGG: ssn:SSON_3731 inner membrane transporter YhiP; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter 242901 12703778 EcDH1_0219 Escherichia coli DH1 amino acid/peptide transporter YP_006090201.1 241432 R 536056 CDS YP_006090202.1 386593802 12703779 complement(243218..243652) 1 NC_017625.1 PFAM: UspA domain protein; KEGG: cko:CKO_04943 hypothetical protein; UspA domain-containing protein 243652 12703779 EcDH1_0220 Escherichia coli DH1 UspA domain-containing protein YP_006090202.1 243218 R 536056 CDS YP_006090203.1 386593803 12703780 244043..244378 1 NC_017625.1 KEGG: sdy:SDY_3568 universal stress protein UspB; universal stress protein UspB 244378 12703780 EcDH1_0221 Escherichia coli DH1 universal stress protein UspB YP_006090203.1 244043 D 536056 CDS YP_006090204.1 386593804 12703781 complement(244622..246121) 1 NC_017625.1 PFAM: phosphate transporter; KEGG: sdy:SDY_3569 low-affinity phosphate transport; phosphate transporter 246121 12703781 EcDH1_0222 Escherichia coli DH1 phosphate transporter YP_006090204.1 244622 R 536056 CDS YP_006090205.1 386593805 12703782 246353..247555 1 NC_017625.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E3830 pyridine nucleotide-disulfide oxidoreductase family protein; hypothetical protein 247555 12703782 EcDH1_0223 Escherichia coli DH1 hypothetical protein YP_006090205.1 246353 D 536056 CDS YP_006090206.1 386593806 12703783 complement(247870..248922) 1 NC_017625.1 KEGG: sbo:SBO_3489 hypothetical protein; hypothetical protein 248922 12703783 EcDH1_0224 Escherichia coli DH1 hypothetical protein YP_006090206.1 247870 R 536056 CDS YP_006090207.1 386593807 12703785 251173..252795 1 NC_017625.1 KEGG: sfx:S4259 hypothetical protein; hypothetical protein 252795 12703785 EcDH1_0226 Escherichia coli DH1 hypothetical protein YP_006090207.1 251173 D 536056 CDS YP_006090208.1 386593808 12703786 253161..254228 1 NC_017625.1 PFAM: secretion protein HlyD family protein; KEGG: sfv:SFV_3488 hypothetical protein; secretion protein HlyD family protein 254228 12703786 EcDH1_0227 Escherichia coli DH1 secretion protein HlyD family protein YP_006090208.1 253161 D 536056 CDS YP_006090209.1 386593809 12703787 254225..256960 1 NC_017625.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sbc:SbBS512_E3836 ABC transporter, ATP binding protein; ABC transporter 256960 12703787 EcDH1_0228 Escherichia coli DH1 ABC transporter YP_006090209.1 254225 D 536056 CDS YP_006090210.1 386593810 12703788 256960..258084 1 NC_017625.1 PFAM: ABC-2 type transporter; KEGG: sbc:SbBS512_E3837 ABC transporter, ATP-binding protein; ABC transporter 258084 12703788 EcDH1_0229 Escherichia coli DH1 ABC transporter YP_006090210.1 256960 D 536056 CDS YP_006090211.1 386593811 12703789 complement(258249..259385) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 putative receptor; transposase IS4 family protein 259385 12703789 EcDH1_0230 Escherichia coli DH1 transposase IS4 family protein YP_006090211.1 258249 R 536056 CDS YP_006090212.1 386593812 12703791 complement(259981..260364) 1 NC_017625.1 KEGG: fjo:Fjoh_2679 hypothetical protein; hypothetical protein 260364 12703791 EcDH1_0232 Escherichia coli DH1 hypothetical protein YP_006090212.1 259981 R 536056 CDS YP_006090213.1 386593813 12703792 complement(260336..264571) 1 NC_017625.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 264571 12703792 EcDH1_0233 Escherichia coli DH1 YD repeat protein YP_006090213.1 260336 R 536056 CDS YP_006090214.1 386593814 12703793 complement(264774..265175) 1 NC_017625.1 TIGRFAM: nickel-responsive transcriptional regulator NikR; PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: sdy:SDY_3636 nickel responsive regulator; CopG family transcriptional regulator 265175 12703793 EcDH1_0234 Escherichia coli DH1 CopG family transcriptional regulator YP_006090214.1 264774 R 536056 CDS YP_006090215.1 386593815 12703794 complement(265181..265987) 1 NC_017625.1 KEGG: ssn:SSON_3718 nickel transporter ATP-binding protein; TIGRFAM: nickel import ATP-binding protein NikE; PFAM: ABC transporter related; SMART: AAA ATPase; nickel import ATP-binding protein NikE 265987 12703794 EcDH1_0235 Escherichia coli DH1 nickel import ATP-binding protein NikE YP_006090215.1 265181 R 536056 CDS YP_006090216.1 386593816 12703795 complement(265984..266748) 1 NC_017625.1 KEGG: sdy:SDY_3634 nickel transporter ATP-binding protein; TIGRFAM: nickel import ATP-binding protein NikD; PFAM: ABC transporter related; SMART: AAA ATPase; nickel import ATP-binding protein NikD 266748 12703795 EcDH1_0236 Escherichia coli DH1 nickel import ATP-binding protein NikD YP_006090216.1 265984 R 536056 CDS YP_006090217.1 386593817 12703796 complement(266748..267581) 1 NC_017625.1 TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_3716 nickel transporter permease NikC; nickel ABC transporter permease NikC 267581 12703796 EcDH1_0237 Escherichia coli DH1 nickel ABC transporter permease NikC YP_006090217.1 266748 R 536056 CDS YP_006090218.1 386593818 12703797 complement(267578..268522) 1 NC_017625.1 TIGRFAM: nickel ABC transporter, permease subunit NikB; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E3844 nickel ABC transporter, permease protein NikB; nickel ABC transporter permease NikB 268522 12703797 EcDH1_0238 Escherichia coli DH1 nickel ABC transporter permease NikB YP_006090218.1 267578 R 536056 CDS YP_006090219.1 386593819 12703798 complement(268522..270096) 1 NC_017625.1 KEGG: sfx:S4269 periplasmic binding protein for nickel; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; nickel ABC transporter periplasmic nickel-binding protein 270096 12703798 EcDH1_0239 Escherichia coli DH1 nickel ABC transporter periplasmic nickel-binding protein YP_006090219.1 268522 R 536056 CDS YP_006090220.1 386593820 12703799 complement(270207..270794) 1 NC_017625.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sbo:SBO_3472 holo-(acyl carrier protein) synthase 2; 4'-phosphopantetheinyl transferase 270794 12703799 EcDH1_0240 Escherichia coli DH1 4'-phosphopantetheinyl transferase YP_006090220.1 270207 R 536056 CDS YP_006090221.1 386593821 12703800 complement(270849..271898) 1 NC_017625.1 PFAM: protein of unknown function UPF0118; KEGG: sbc:SbBS512_E3848 hypothetical protein; hypothetical protein 271898 12703800 EcDH1_0241 Escherichia coli DH1 hypothetical protein YP_006090221.1 270849 R 536056 CDS YP_006090222.1 386593822 12703801 271997..273247 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3849 transporter, major facilitator family; major facilitator superfamily protein 273247 12703801 EcDH1_0242 Escherichia coli DH1 major facilitator superfamily protein YP_006090222.1 271997 D 536056 CDS YP_006090223.1 386593823 12703802 complement(273251..273808) 1 NC_017625.1 KEGG: sdy:SDY_3623 hypothetical protein; hypothetical protein 273808 12703802 EcDH1_0243 Escherichia coli DH1 hypothetical protein YP_006090223.1 273251 R 536056 CDS YP_006090224.1 386593824 12703803 complement(273881..274546) 1 NC_017625.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: sbc:SbBS512_E3851 hypothetical protein; hypothetical protein 274546 12703803 EcDH1_0244 Escherichia coli DH1 hypothetical protein YP_006090224.1 273881 R 536056 CDS YP_006090225.1 386593825 12703804 274767..275012 1 NC_017625.1 PFAM: SirA family protein; KEGG: sdy:SDY_3621 cell developmental protein SirA; SirA family protein 275012 12703804 EcDH1_0245 Escherichia coli DH1 SirA family protein YP_006090225.1 274767 D 536056 CDS YP_006090226.1 386593826 12703805 complement(275114..277312) 1 NC_017625.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ssn:SSON_3707 zinc/cadmium/mercury/lead-transporting ATPase; heavy metal translocating P-type ATPase 277312 12703805 EcDH1_0246 Escherichia coli DH1 heavy metal translocating P-type ATPase YP_006090226.1 275114 R 536056 CDS YP_006090227.1 386593827 12703806 complement(277386..278012) 1 NC_017625.1 PFAM: YhhN family protein; KEGG: sbc:SbBS512_E3854 hypothetical protein; hypothetical protein 278012 12703806 EcDH1_0247 Escherichia coli DH1 hypothetical protein YP_006090227.1 277386 R 536056 CDS YP_006090228.1 386593828 12703807 278153..278512 1 NC_017625.1 KEGG: sbo:SBO_3464 putative receptor; putative receptor 278512 12703807 EcDH1_0248 Escherichia coli DH1 putative receptor YP_006090228.1 278153 D 536056 CDS YP_006090229.1 386593829 12703808 complement(278515..278784) 1 NC_017625.1 PFAM: protein of unknown function DUF1145; KEGG: sdy:SDY_3617 hypothetical protein; hypothetical protein 278784 12703808 EcDH1_0249 Escherichia coli DH1 hypothetical protein YP_006090229.1 278515 R 536056 CDS YP_006090230.1 386593830 12703809 complement(278774..279370) 1 NC_017625.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: sbo:SBO_3462 predicted methyltransferase; methyltransferase 279370 12703809 EcDH1_0250 Escherichia coli DH1 methyltransferase YP_006090230.1 278774 R 536056 CDS YP_006090231.1 386593831 12703810 279520..281013 1 NC_017625.1 KEGG: sdy:SDY_3615 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 281013 12703810 EcDH1_0251 Escherichia coli DH1 signal recognition particle-docking protein FtsY YP_006090231.1 279520 D 536056 CDS YP_006090232.1 386593832 12703811 281016..281684 1 NC_017625.1 KEGG: sdy:SDY_3614 cell division protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; Type II (General) Secretory Pathway (IISP) Family protein; PFAM: ABC transporter related; SMART: AAA ATPase; Type II (General) Secretory Pathway (IISP) Family protein 281684 12703811 EcDH1_0252 Escherichia coli DH1 Type II (General) Secretory Pathway (IISP) Family protein YP_006090232.1 281016 D 536056 CDS YP_006090233.1 386593833 12703812 281677..282735 1 NC_017625.1 TIGRFAM: protein insertion ABC transporter, inner membrane subunit FtsX; PFAM: protein of unknown function DUF214; KEGG: sdy:SDY_3613 cell division protein FtsX; protein insertion ABC transporter inner membrane subunit FtsX 282735 12703812 EcDH1_0253 Escherichia coli DH1 protein insertion ABC transporter inner membrane subunit FtsX YP_006090233.1 281677 D 536056 CDS YP_006090234.1 386593834 12703813 282980..283834 1 NC_017625.1 TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sdy:SDY_3612 RNA polymerase factor sigma-32; RNA polymerase sigma-32 subunit RpoH 283834 12703813 EcDH1_0254 Escherichia coli DH1 RNA polymerase sigma-32 subunit RpoH YP_006090234.1 282980 D 536056 CDS YP_006090235.1 386593835 12703814 284105..285208 1 NC_017625.1 PFAM: Extracellular ligand-binding receptor; KEGG: sbo:SBO_3457 high-affinity amino acid transport system periplasmic binding protein; extracellular ligand-binding receptor 285208 12703814 EcDH1_0255 Escherichia coli DH1 extracellular ligand-binding receptor YP_006090235.1 284105 D 536056 CDS YP_006090236.1 386593836 12703815 complement(285396..285779) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_3610 hypothetical protein; N-acetyltransferase GCN5 285779 12703815 EcDH1_0256 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006090236.1 285396 R 536056 CDS YP_006090237.1 386593837 12703816 286203..287312 1 NC_017625.1 PFAM: Extracellular ligand-binding receptor; KEGG: sbc:SbBS512_E3864 high-affinity branched-chain amino acid ABC transporter, periplasmic leucine-specific-binding protein LivK; extracellular ligand-binding receptor 287312 12703816 EcDH1_0257 Escherichia coli DH1 extracellular ligand-binding receptor YP_006090237.1 286203 D 536056 CDS YP_006090238.1 386593838 12703817 287360..288286 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3865 high-affinity branched-chain amino acid transport system permease protein LivH; inner-membrane translocator 288286 12703817 EcDH1_0258 Escherichia coli DH1 inner-membrane translocator YP_006090238.1 287360 D 536056 CDS YP_006090239.1 386593839 12703818 288283..289560 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3866 high-affinity branched-chain amino acid ABC transporter, permease protein LivM; inner-membrane translocator 289560 12703818 EcDH1_0259 Escherichia coli DH1 inner-membrane translocator YP_006090239.1 288283 D 536056 CDS YP_006090240.1 386593840 12703819 289557..290324 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E3867 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivG; ABC transporter 290324 12703819 EcDH1_0260 Escherichia coli DH1 ABC transporter YP_006090240.1 289557 D 536056 CDS YP_006090241.1 386593841 12703820 290326..291039 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_3692 leucine/isoleucine/valine transporter ATP-binding subunit; ABC transporter 291039 12703820 EcDH1_0261 Escherichia coli DH1 ABC transporter YP_006090241.1 290326 D 536056 CDS YP_006090242.1 386593842 12703821 291438..292754 1 NC_017625.1 PFAM: extracellular solute-binding protein family 1; KEGG: sfv:SFV_3456 glycerol-3-phosphate transporter periplasmic binding protein; extracellular solute-binding protein 292754 12703821 EcDH1_0262 Escherichia coli DH1 extracellular solute-binding protein YP_006090242.1 291438 D 536056 CDS YP_006090243.1 386593843 12703822 292852..293739 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_3455 glycerol-3-phosphate transporter permease; binding-protein-dependent transport system inner membrane protein 293739 12703822 EcDH1_0263 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006090243.1 292852 D 536056 CDS YP_006090244.1 386593844 12703823 293736..294581 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E3872 sn-glycerol 3-phosphate transport protein; binding-protein-dependent transport system inner membrane protein 294581 12703823 EcDH1_0264 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006090244.1 293736 D 536056 CDS YP_006090245.1 386593845 12703824 294583..295653 1 NC_017625.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sbo:SBO_3446 glycerol-3-phosphate transporter ATP-binding subunit; ABC transporter 295653 12703824 EcDH1_0265 Escherichia coli DH1 ABC transporter YP_006090245.1 294583 D 536056 CDS YP_006090246.1 386593846 12703825 295650..296393 1 NC_017625.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ssn:SSON_3687 cytoplasmic glycerophosphodiester phosphodiesterase; Glycerophosphodiester phosphodiesterase 296393 12703825 EcDH1_0266 Escherichia coli DH1 Glycerophosphodiester phosphodiesterase YP_006090246.1 295650 D 536056 CDS YP_006090247.1 386593847 12703826 complement(296380..296820) 1 NC_017625.1 KEGG: sbc:SbBS512_E3874 hypothetical protein; hypothetical protein 296820 12703826 EcDH1_0267 Escherichia coli DH1 hypothetical protein YP_006090247.1 296380 R 536056 CDS YP_006090248.1 386593848 12703827 296940..298682 1 NC_017625.1 KEGG: sfv:SFV_3450 gamma-glutamyltranspeptidase periplasmic precursor; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 298682 12703827 EcDH1_0268 Escherichia coli DH1 gamma-glutamyltransferase YP_006090248.1 296940 D 536056 CDS YP_006090249.1 386593849 12703828 complement(298720..299004) 1 NC_017625.1 KEGG: sbc:SbBS512_E3877 hypothetical protein; hypothetical protein 299004 12703828 EcDH1_0269 Escherichia coli DH1 hypothetical protein YP_006090249.1 298720 R 536056 CDS YP_006090250.1 386593850 12703829 complement(299204..299359) 1 NC_017625.1 hypothetical protein 299359 12703829 EcDH1_0270 Escherichia coli DH1 hypothetical protein YP_006090250.1 299204 R 536056 CDS YP_006090251.1 386593851 12703831 complement(300309..300725) 1 NC_017625.1 KEGG: kpe:KPK_2247 hypothetical protein; hypothetical protein 300725 12703831 EcDH1_0272 Escherichia coli DH1 hypothetical protein YP_006090251.1 300309 R 536056 CDS YP_006090252.1 386593852 12703832 complement(300722..301900) 1 NC_017625.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: HNH endonuclease; protein of unknown function DUF796; KEGG: sbc:SbBS512_E3883 HNH endonuclease domain protein; type VI secretion system effector 301900 12703832 EcDH1_0273 Escherichia coli DH1 type VI secretion system effector YP_006090252.1 300722 R 536056 CDS YP_006090253.1 386593853 12703833 complement(302137..302625) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E3884 acetyltransferase, GNAT family; N-acetyltransferase GCN5 302625 12703833 EcDH1_0274 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006090253.1 302137 R 536056 CDS YP_006090254.1 386593854 12703834 302958..303995 1 NC_017625.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ssn:SSON_3682 putative regulator; oxidoreductase domain-containing protein 303995 12703834 EcDH1_0275 Escherichia coli DH1 oxidoreductase domain-containing protein YP_006090254.1 302958 D 536056 CDS YP_006090255.1 386593855 12703835 304118..304813 1 NC_017625.1 PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: sbc:SbBS512_E3886 pirin family protein; Pirin domain-containing protein 304813 12703835 EcDH1_0276 Escherichia coli DH1 Pirin domain-containing protein YP_006090255.1 304118 D 536056 CDS YP_006090256.1 386593856 12703836 305037..306032 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cko:CKO_04857 hypothetical protein; LacI family transcriptional regulator 306032 12703836 EcDH1_0277 Escherichia coli DH1 LacI family transcriptional regulator YP_006090256.1 305037 D 536056 CDS YP_006090257.1 386593857 12703837 306210..306698 1 NC_017625.1 KEGG: sdy:SDY_3588 gluconate kinase 1; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 306698 12703837 EcDH1_0278 Escherichia coli DH1 thermoresistant glucokinase family carbohydrate kinase YP_006090257.1 306210 D 536056 CDS YP_006090258.1 386593858 12703838 306702..308042 1 NC_017625.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: sdy:SDY_3587 gluconate transporter, low affinity GNT 1 system; gluconate transporter 308042 12703838 EcDH1_0279 Escherichia coli DH1 gluconate transporter YP_006090258.1 306702 D 536056 CDS YP_006090259.1 386593859 12703839 complement(308099..308692) 1 NC_017625.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: sdy:SDY_3580 putative eubacterial dITP- and XTP- hydrolyzing enzyme; multiple antibiotic resistance (MarC)-like protein 308692 12703839 EcDH1_0280 Escherichia coli DH1 multiple antibiotic resistance (MarC)-like protein YP_006090259.1 308099 R 536056 CDS YP_006090260.1 386593860 12703840 308885..309988 1 NC_017625.1 KEGG: sbo:SBO_3431 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase 309988 12703840 EcDH1_0281 Escherichia coli DH1 aspartate-semialdehyde dehydrogenase YP_006090260.1 308885 D 536056 CDS YP_006090261.1 386593861 12703841 310261..312447 1 NC_017625.1 KEGG: ssn:SSON_3672 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein 312447 12703841 EcDH1_0282 Escherichia coli DH1 1,4-alpha-glucan-branching protein YP_006090261.1 310261 D 536056 CDS YP_006090262.1 386593862 12703842 312444..314417 1 NC_017625.1 KEGG: sbc:SbBS512_E3893 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 314417 12703842 EcDH1_0283 Escherichia coli DH1 glycogen debranching protein GlgX YP_006090262.1 312444 D 536056 CDS YP_006090263.1 386593863 12703843 314435..315730 1 NC_017625.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sdy:SDY_3576 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 315730 12703843 EcDH1_0284 Escherichia coli DH1 glucose-1-phosphate adenylyltransferase YP_006090263.1 314435 D 536056 CDS YP_006090264.1 386593864 12703844 315730..317163 1 NC_017625.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: ssn:SSON_3669 glycogen synthase; glycogen/starch synthase 317163 12703844 EcDH1_0285 Escherichia coli DH1 glycogen/starch synthase YP_006090264.1 315730 D 536056 CDS YP_006090265.1 386593865 12703845 317182..319629 1 NC_017625.1 KEGG: sdy:SDY_3574 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 319629 12703845 EcDH1_0286 Escherichia coli DH1 glycogen/starch/alpha-glucan phosphorylase YP_006090265.1 317182 D 536056 CDS YP_006090266.1 386593866 12703846 319758..320039 1 NC_017625.1 KEGG: sfv:SFV_3434 hypothetical protein; hypothetical protein 320039 12703846 EcDH1_0287 Escherichia coli DH1 hypothetical protein YP_006090266.1 319758 D 536056 CDS YP_006090267.1 386593867 12703847 complement(320245..321750) 1 NC_017625.1 PFAM: FAD dependent oxidoreductase; KEGG: sfl:SF3448 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 321750 12703847 EcDH1_0288 Escherichia coli DH1 FAD dependent oxidoreductase YP_006090267.1 320245 R 536056 CDS YP_006090268.1 386593868 12703848 321940..322266 1 NC_017625.1 PFAM: Rhodanese domain protein; KEGG: ssn:SSON_3662 thiosulfate sulfurtransferase; Rhodanese domain-containing protein 322266 12703848 EcDH1_0289 Escherichia coli DH1 Rhodanese domain-containing protein YP_006090268.1 321940 D 536056 CDS YP_006090269.1 386593869 12703849 322311..323141 1 NC_017625.1 PFAM: Rhomboid family protein; KEGG: sdy:SDY_3651 predicted intramembrane serine protease; rhomboid family protein 323141 12703849 EcDH1_0290 Escherichia coli DH1 rhomboid family protein YP_006090269.1 322311 D 536056 CDS YP_006090270.1 386593870 12703850 323158..323916 1 NC_017625.1 PFAM: regulatory protein DeoR; KEGG: sdy:SDY_3652 DNA-binding transcriptional repressor; DeoR family transcriptional regulator 323916 12703850 EcDH1_0291 Escherichia coli DH1 DeoR family transcriptional regulator YP_006090270.1 323158 D 536056 CDS YP_006090271.1 386593871 12703851 complement(323898..325496) 1 NC_017625.1 PFAM: sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfv:SFV_3429 putative 2-component regulator; sigma-54 interacting domain-containing protein 325496 12703851 EcDH1_0292 Escherichia coli DH1 sigma-54 interacting domain-containing protein YP_006090271.1 323898 R 536056 CDS YP_006090272.1 386593872 12703852 325685..326911 1 NC_017625.1 PFAM: protein of unknown function UPF0027; KEGG: sbc:SbBS512_E3801 RtcB protein; hypothetical protein 326911 12703852 EcDH1_0293 Escherichia coli DH1 hypothetical protein YP_006090272.1 325685 D 536056 CDS YP_006090273.1 386593873 12703853 326915..327931 1 NC_017625.1 KEGG: sbc:SbBS512_E3800 RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; RNA 3'-phosphate cyclase 327931 12703853 EcDH1_0294 Escherichia coli DH1 RNA 3'-phosphate cyclase YP_006090273.1 326915 D 536056 CDS YP_006090274.1 386593874 12703854 complement(327974..330679) 1 NC_017625.1 PFAM: regulatory protein LuxR; KEGG: sbo:SBO_3407 transcriptional regulator MalT; LuxR family ATP-dependent transcriptional regulator 330679 12703854 EcDH1_0295 Escherichia coli DH1 LuxR family ATP-dependent transcriptional regulator YP_006090274.1 327974 R 536056 CDS YP_006090275.1 386593875 12703855 331291..333684 1 NC_017625.1 KEGG: ssn:SSON_3549 maltodextrin phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 333684 12703855 EcDH1_0296 Escherichia coli DH1 glycogen/starch/alpha-glucan phosphorylase YP_006090275.1 331291 D 536056 CDS YP_006090276.1 386593876 12703856 333694..335778 1 NC_017625.1 KEGG: sfx:S4326 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 335778 12703856 EcDH1_0297 Escherichia coli DH1 4-alpha-glucanotransferase YP_006090276.1 333694 D 536056 CDS YP_006090277.1 386593877 12703857 complement(335889..337205) 1 NC_017625.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: sbc:SbBS512_E3796 high-affinity gluconate transporter; gluconate transporter 337205 12703857 EcDH1_0298 Escherichia coli DH1 gluconate transporter YP_006090277.1 335889 R 536056 CDS YP_006090278.1 386593878 12703858 complement(337565..338140) 1 NC_017625.1 TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: sdy:SDY_3662 predicted gluconate transport-associated protein; IscR-regulated protein YhgI 338140 12703858 EcDH1_0299 Escherichia coli DH1 IscR-regulated protein YhgI YP_006090278.1 337565 R 536056 CDS YP_006090279.1 386593879 12703859 complement(338199..338882) 1 NC_017625.1 TIGRFAM: comF family protein; KEGG: sfv:SFV_3421 gluconate periplasmic binding protein; comF family protein 338882 12703859 EcDH1_0300 Escherichia coli DH1 comF family protein YP_006090279.1 338199 R 536056 CDS YP_006090280.1 386593880 12703860 338920..339690 1 NC_017625.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: sfx:S4329 carboxylesterase BioH; bioH protein 339690 12703860 EcDH1_0301 Escherichia coli DH1 bioH protein YP_006090280.1 338920 D 536056 CDS YP_006090281.1 386593881 12703861 complement(339719..340597) 1 NC_017625.1 PFAM: putative transposase YhgA family protein; KEGG: sbc:SbBS512_E3792 putative transposase, YhgA; putative transposase YhgA family protein 340597 12703861 EcDH1_0302 Escherichia coli DH1 putative transposase YhgA family protein YP_006090281.1 339719 R 536056 CDS YP_006090282.1 386593882 12703862 complement(340800..341036) 1 NC_017625.1 PFAM: Protein of unknown function DUF1920; KEGG: sdy:SDY_3666 hypothetical protein; hypothetical protein 341036 12703862 EcDH1_0303 Escherichia coli DH1 hypothetical protein YP_006090282.1 340800 R 536056 CDS YP_006090283.1 386593883 12703863 complement(341036..343357) 1 NC_017625.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: sbc:SbBS512_E3790 ferrous iron transport protein B; ferrous iron transport protein B 343357 12703863 EcDH1_0304 Escherichia coli DH1 ferrous iron transport protein B YP_006090283.1 341036 R 536056 CDS YP_006090284.1 386593884 12703864 complement(343374..343601) 1 NC_017625.1 PFAM: FeoA family protein; KEGG: sdy:SDY_3668 ferrous iron transport protein A; FeoA family protein 343601 12703864 EcDH1_0305 Escherichia coli DH1 FeoA family protein YP_006090284.1 343374 R 536056 CDS YP_006090285.1 386593885 12703865 complement(344058..346379) 1 NC_017625.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sbc:SbBS512_E3786 putative transcriptional accessory protein; RNA binding S1 domain-containing protein 346379 12703865 EcDH1_0306 Escherichia coli DH1 RNA binding S1 domain-containing protein YP_006090285.1 344058 R 536056 CDS YP_006090286.1 386593886 12703866 complement(346476..346952) 1 NC_017625.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: sdy:SDY_3670 transcription elongation factor GreB; transcription elongation factor GreB 346952 12703866 EcDH1_0307 Escherichia coli DH1 transcription elongation factor GreB YP_006090286.1 346476 R 536056 CDS YP_006090287.1 386593887 12703867 347180..347899 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cko:CKO_04827 osmolarity response regulator; winged helix family two component transcriptional regulator 347899 12703867 EcDH1_0308 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006090287.1 347180 D 536056 CDS YP_006090288.1 386593888 12703868 347896..349248 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_3672 osmolarity sensor protein; histidine kinase 349248 12703868 EcDH1_0309 Escherichia coli DH1 histidine kinase YP_006090288.1 347896 D 536056 CDS YP_006090289.1 386593889 12703869 complement(349324..350946) 1 NC_017625.1 PFAM: phosphoenolpyruvate carboxykinase (ATP); KEGG: sbc:SbBS512_E3782 phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase 350946 12703869 EcDH1_0310 Escherichia coli DH1 phosphoenolpyruvate carboxykinase YP_006090289.1 349324 R 536056 CDS YP_006090290.1 386593890 12703870 351325..353049 1 NC_017625.1 KEGG: sbc:SbBS512_E3780 hypothetical protein; hypothetical protein 353049 12703870 EcDH1_0311 Escherichia coli DH1 hypothetical protein YP_006090290.1 351325 D 536056 CDS YP_006090291.1 386593891 12703871 complement(353112..353990) 1 NC_017625.1 PFAM: Hsp33 protein; KEGG: sdy:SDY_3677 HSP33-like chaperonin; Hsp33 protein 353990 12703871 EcDH1_0312 Escherichia coli DH1 Hsp33 protein YP_006090291.1 353112 R 536056 CDS YP_006090292.1 386593892 12703872 complement(354015..354416) 1 NC_017625.1 PFAM: RNA-binding S4 domain protein; KEGG: sdy:SDY_3678 ribosome-associated heat shock protein HSP15; RNA-binding S4 domain-containing protein 354416 12703872 EcDH1_0313 Escherichia coli DH1 RNA-binding S4 domain-containing protein YP_006090292.1 354015 R 536056 CDS YP_006090293.1 386593893 12703873 complement(354427..355095) 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdy:SDY_3679 putative phosphatase; HAD-superfamily hydrolase 355095 12703873 EcDH1_0314 Escherichia coli DH1 HAD-superfamily hydrolase YP_006090293.1 354427 R 536056 CDS YP_006090294.1 386593894 12703874 complement(355160..357295) 1 NC_017625.1 PFAM: Intracellular growth attenuator IgaA; KEGG: sfv:SFV_3403 putative dehydrogenase; intracellular growth attenuator igaA 357295 12703874 EcDH1_0315 Escherichia coli DH1 intracellular growth attenuator igaA YP_006090294.1 355160 R 536056 CDS YP_006090295.1 386593895 12703875 357615..358175 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E3774 ADP compounds hydrolase NudE; NUDIX hydrolase 358175 12703875 EcDH1_0316 Escherichia coli DH1 NUDIX hydrolase YP_006090295.1 357615 D 536056 CDS YP_006090296.1 386593896 12703876 complement(358341..360893) 1 NC_017625.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: sbo:SBO_3383 peptidoglycan synthetase; penicillin-binding protein 360893 12703876 EcDH1_0317 Escherichia coli DH1 penicillin-binding protein YP_006090296.1 358341 R 536056 CDS YP_006090297.1 386593897 12703877 361013..361792 1 NC_017625.1 KEGG: ssn:SSON_3526 hypothetical protein; hypothetical protein 361792 12703877 EcDH1_0318 Escherichia coli DH1 hypothetical protein YP_006090297.1 361013 D 536056 CDS YP_006090298.1 386593898 12703878 361792..362331 1 NC_017625.1 PFAM: Fimbrial assembly family protein; KEGG: sbc:SbBS512_E3771 PilN family protein; fimbrial assembly family protein 362331 12703878 EcDH1_0319 Escherichia coli DH1 fimbrial assembly family protein YP_006090298.1 361792 D 536056 CDS YP_006090299.1 386593899 12703879 362315..362755 1 NC_017625.1 KEGG: sfv:SFV_3398 hypothetical protein; hypothetical protein 362755 12703879 EcDH1_0320 Escherichia coli DH1 hypothetical protein YP_006090299.1 362315 D 536056 CDS YP_006090300.1 386593900 12703880 362745..363149 1 NC_017625.1 KEGG: sdy:SDY_3687 hypothetical protein; hypothetical protein 363149 12703880 EcDH1_0321 Escherichia coli DH1 hypothetical protein YP_006090300.1 362745 D 536056 CDS YP_006090301.1 386593901 12703881 363061..364299 1 NC_017625.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: ssn:SSON_3522 predicted fimbrial transporter; type IV pilus secretin PilQ 364299 12703881 EcDH1_0322 Escherichia coli DH1 type IV pilus secretin PilQ YP_006090301.1 363061 D 536056 CDS YP_006090302.1 386593902 12703882 364544..365221 1 NC_017625.1 PFAM: shikimate kinase; KEGG: sfv:SFV_3395 shikimate kinase I; shikimate kinase 365221 12703882 EcDH1_0323 Escherichia coli DH1 shikimate kinase YP_006090302.1 364544 D 536056 CDS YP_006090303.1 386593903 12703883 365278..366366 1 NC_017625.1 PFAM: 3-dehydroquinate synthase; KEGG: sbo:SBO_3376 3-dehydroquinate synthase; 3-dehydroquinate synthase 366366 12703883 EcDH1_0324 Escherichia coli DH1 3-dehydroquinate synthase YP_006090303.1 365278 D 536056 CDS YP_006090304.1 386593904 12703884 366458..367744 1 NC_017625.1 PFAM: Sporulation domain protein; KEGG: sfv:SFV_3393 hypothetical protein; Sporulation domain-containing protein 367744 12703884 EcDH1_0325 Escherichia coli DH1 Sporulation domain-containing protein YP_006090304.1 366458 D 536056 CDS YP_006090305.1 386593905 12703885 367851..368687 1 NC_017625.1 KEGG: sbc:SbBS512_E3764 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 368687 12703885 EcDH1_0326 Escherichia coli DH1 DNA adenine methylase YP_006090305.1 367851 D 536056 CDS YP_006090306.1 386593906 12703886 368705..369382 1 NC_017625.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: sbc:SbBS512_E3763 ribulose-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase 369382 12703886 EcDH1_0327 Escherichia coli DH1 Ribulose-phosphate 3-epimerase YP_006090306.1 368705 D 536056 CDS YP_006090307.1 386593907 12703887 369375..370133 1 NC_017625.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_3516 phosphoglycolate phosphatase; phosphoglycolate phosphatase 370133 12703887 EcDH1_0328 Escherichia coli DH1 phosphoglycolate phosphatase YP_006090307.1 369375 D 536056 CDS YP_006090308.1 386593908 12703888 370126..371130 1 NC_017625.1 KEGG: sdy:SDY_3695 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 371130 12703888 EcDH1_0329 Escherichia coli DH1 tryptophanyl-tRNA synthetase YP_006090308.1 370126 D 536056 CDS YP_006090309.1 386593909 12703889 371420..372325 1 NC_017625.1 KEGG: sbc:SbBS512_E3760 hypothetical protein; hypothetical protein 372325 12703889 EcDH1_0330 Escherichia coli DH1 hypothetical protein YP_006090309.1 371420 D 536056 CDS YP_006090310.1 386593910 12703890 372342..372704 1 NC_017625.1 KEGG: sbc:SbBS512_E3759 hypothetical protein; hypothetical protein 372704 12703890 EcDH1_0331 Escherichia coli DH1 hypothetical protein YP_006090310.1 372342 D 536056 CDS YP_006090311.1 386593911 12703891 372788..373951 1 NC_017625.1 PFAM: alanine racemase domain protein; KEGG: sbc:SbBS512_E3758 alanine racemase family; alanine racemase 373951 12703891 EcDH1_0332 Escherichia coli DH1 alanine racemase YP_006090311.1 372788 D 536056 CDS YP_006090312.1 386593912 12703892 373951..375177 1 NC_017625.1 PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein; KEGG: sbc:SbBS512_E3757 metalloenzyme domain protein; Phosphopentomutase 375177 12703892 EcDH1_0333 Escherichia coli DH1 Phosphopentomutase YP_006090312.1 373951 D 536056 CDS YP_006090313.1 386593913 12703893 375174..376052 1 NC_017625.1 PFAM: aryldialkylphosphatase; KEGG: sfv:SFV_3384 putative hydrolase; aryldialkylphosphatase 376052 12703893 EcDH1_0334 Escherichia coli DH1 aryldialkylphosphatase YP_006090313.1 375174 D 536056 CDS YP_006090314.1 386593914 12703894 376063..376416 1 NC_017625.1 KEGG: sfv:SFV_3383 hypothetical protein; hypothetical protein 376416 12703894 EcDH1_0335 Escherichia coli DH1 hypothetical protein YP_006090314.1 376063 D 536056 CDS YP_006090315.1 386593915 12703895 376428..377732 1 NC_017625.1 KEGG: sfx:S4367 putative transport system permease protein; putative transport system permease 377732 12703895 EcDH1_0336 Escherichia coli DH1 putative transport system permease YP_006090315.1 376428 D 536056 CDS YP_006090316.1 386593916 12703896 377744..378829 1 NC_017625.1 KEGG: sbc:SbBS512_E3753 hypothetical protein; putative GntR family transcriptional regulator 378829 12703896 EcDH1_0337 Escherichia coli DH1 putative GntR family transcriptional regulator YP_006090316.1 377744 D 536056 CDS YP_006090317.1 386593917 12703897 complement(378981..379712) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sbc:SbBS512_E3752 GntR-family transcriptional regulator FrlR; GntR family transcriptional regulator 379712 12703897 EcDH1_0338 Escherichia coli DH1 GntR family transcriptional regulator YP_006090317.1 378981 R 536056 CDS YP_006090318.1 386593918 12703898 complement(379812..380597) 1 NC_017625.1 PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E3751 kinase, PfkB family; PfkB domain-containing protein 380597 12703898 EcDH1_0339 Escherichia coli DH1 PfkB domain-containing protein YP_006090318.1 379812 R 536056 CDS YP_006090319.1 386593919 12703899 complement(380594..381424) 1 NC_017625.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfv:SFV_3378 fructoselysine 3-epimerase; xylose isomerase domain-containing protein 381424 12703899 EcDH1_0340 Escherichia coli DH1 xylose isomerase domain-containing protein YP_006090319.1 380594 R 536056 CDS YP_006090320.1 386593920 12703900 complement(381474..382496) 1 NC_017625.1 PFAM: sugar isomerase (SIS); KEGG: sfv:SFV_3377 fructoselysine-6-P-deglycase; sugar isomerase (SIS) 382496 12703900 EcDH1_0341 Escherichia coli DH1 sugar isomerase (SIS) YP_006090320.1 381474 R 536056 CDS YP_006090321.1 386593921 12703901 complement(382517..383854) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: ssn:SSON_3502 predicted fructoselysine transporter; amino acid permease 383854 12703901 EcDH1_0342 Escherichia coli DH1 amino acid permease YP_006090321.1 382517 R 536056 CDS YP_006090322.1 386593922 12703902 complement(384149..384316) 1 NC_017625.1 KEGG: sbc:SbBS512_E3747 putative lipoprotein; putative lipoprotein 384316 12703902 EcDH1_0343 Escherichia coli DH1 putative lipoprotein YP_006090322.1 384149 R 536056 CDS YP_006090323.1 386593923 12703903 complement(384563..385936) 1 NC_017625.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Siroheme synthase domain protein; KEGG: ssn:SSON_3499 siroheme synthase; uroporphyrin-III C-methyltransferase 385936 12703903 EcDH1_0344 Escherichia coli DH1 uroporphyrin-III C-methyltransferase YP_006090323.1 384563 R 536056 CDS YP_006090324.1 386593924 12703904 complement(385955..386761) 1 NC_017625.1 PFAM: formate/nitrite transporter; KEGG: sfv:SFV_3373 nitrite transporter NirC; formate/nitrite transporter 386761 12703904 EcDH1_0345 Escherichia coli DH1 formate/nitrite transporter YP_006090324.1 385955 R 536056 CDS YP_006090325.1 386593925 12703905 complement(386887..387213) 1 NC_017625.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: sdy:SDY_3528 nitrite reductase small subunit; nitrite reductase (NAD(P)H) small subunit 387213 12703905 EcDH1_0346 Escherichia coli DH1 nitrite reductase (NAD(P)H) small subunit YP_006090325.1 386887 R 536056 CDS YP_006090326.1 386593926 12703906 complement(387210..389753) 1 NC_017625.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sbc:SbBS512_E3741 nitrite reductase [NAD(P)H], large subunit; nitrite reductase (NAD(P)H) large subunit 389753 12703906 EcDH1_0347 Escherichia coli DH1 nitrite reductase (NAD(P)H) large subunit YP_006090326.1 387210 R 536056 CDS YP_006090327.1 386593927 12703907 complement(390015..391196) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_3346 hypothetical protein; major facilitator superfamily protein 391196 12703907 EcDH1_0348 Escherichia coli DH1 major facilitator superfamily protein YP_006090327.1 390015 R 536056 CDS YP_006090328.1 386593928 12703908 391467..392039 1 NC_017625.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sbc:SbBS512_E3738 peptidyl-prolyl cis-trans isomerase A; Peptidylprolyl isomerase 392039 12703908 EcDH1_0349 Escherichia coli DH1 Peptidylprolyl isomerase YP_006090328.1 391467 D 536056 CDS YP_006090329.1 386593929 12703909 392144..392311 1 NC_017625.1 KEGG: sdy:SDY_3524 hypothetical protein; hypothetical protein 392311 12703909 EcDH1_0350 Escherichia coli DH1 hypothetical protein YP_006090329.1 392144 D 536056 CDS YP_006090330.1 386593930 12703910 392301..392903 1 NC_017625.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: sfv:SFV_3367 cell filamentation protein Fic; filamentation induced by cAMP protein fic 392903 12703910 EcDH1_0351 Escherichia coli DH1 filamentation induced by cAMP protein fic YP_006090330.1 392301 D 536056 CDS YP_006090331.1 386593931 12703911 392935..393498 1 NC_017625.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sdy:SDY_3522 para-aminobenzoate synthase component II; glutamine amidotransferase of anthranilate synthase 393498 12703911 EcDH1_0352 Escherichia coli DH1 glutamine amidotransferase of anthranilate synthase YP_006090331.1 392935 D 536056 CDS YP_006090332.1 386593932 12703912 393584..394804 1 NC_017625.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; succinylornithine transaminase family; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: ssn:SSON_3490 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; succinylornithine transaminase family 394804 12703912 EcDH1_0353 Escherichia coli DH1 succinylornithine transaminase family YP_006090332.1 393584 D 536056 CDS YP_006090333.1 386593933 12703913 complement(394871..396961) 1 NC_017625.1 TIGRFAM: integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: sbc:SbBS512_E3734 integral membrane protein, YccS/YhfK family; YccS/YhfK family integral membrane protein 396961 12703913 EcDH1_0354 Escherichia coli DH1 YccS/YhfK family integral membrane protein YP_006090333.1 394871 R 536056 CDS YP_006090334.1 386593934 12703914 complement(397012..397644) 1 NC_017625.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sdy:SDY_3519 cAMP-regulatory protein; CarD family transcriptional regulator 397644 12703914 EcDH1_0355 Escherichia coli DH1 CarD family transcriptional regulator YP_006090334.1 397012 R 536056 CDS YP_006090335.1 386593935 12703915 397946..398350 1 NC_017625.1 PFAM: OsmC family protein; KEGG: sdy:SDY_3518 hypothetical protein; OsmC family protein 398350 12703915 EcDH1_0356 Escherichia coli DH1 OsmC family protein YP_006090335.1 397946 D 536056 CDS YP_006090336.1 386593936 12703916 complement(398405..399274) 1 NC_017625.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: sbo:SBO_3335 probable phosphoribulokinase; Phosphoribulokinase 399274 12703916 EcDH1_0357 Escherichia coli DH1 Phosphoribulokinase YP_006090336.1 398405 R 536056 CDS YP_006090337.1 386593937 12703917 complement(399328..399546) 1 NC_017625.1 PFAM: protein of unknown function UPF0270; KEGG: sbc:SbBS512_E3729 hypothetical protein; hypothetical protein 399546 12703917 EcDH1_0358 Escherichia coli DH1 hypothetical protein YP_006090337.1 399328 R 536056 CDS YP_006090338.1 386593938 12703918 complement(399540..400562) 1 NC_017625.1 PFAM: alpha/beta hydrolase fold; KEGG: ssn:SSON_3484 predicted hydrolase; alpha/beta hydrolase fold protein 400562 12703918 EcDH1_0359 Escherichia coli DH1 alpha/beta hydrolase fold protein YP_006090338.1 399540 R 536056 CDS YP_006090339.1 386593939 12703919 complement(400562..402475) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_3483 putative ABC transporter ATP-binding protein; ABC transporter 402475 12703919 EcDH1_0360 Escherichia coli DH1 ABC transporter YP_006090339.1 400562 R 536056 CDS YP_006090340.1 386593940 12703920 402606..403157 1 NC_017625.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ssn:SSON_3482 glutathione-regulated potassium-efflux system ancillary protein KefG; NAD(P)H dehydrogenase (quinone) 403157 12703920 EcDH1_0361 Escherichia coli DH1 NAD(P)H dehydrogenase (quinone) YP_006090340.1 402606 D 536056 CDS YP_006090341.1 386593941 12703921 403157..404962 1 NC_017625.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: ssn:SSON_3481 glutathione-regulated potassium-efflux system protein KefB; potassium efflux system protein 404962 12703921 EcDH1_0362 Escherichia coli DH1 potassium efflux system protein YP_006090341.1 403157 D 536056 CDS YP_006090342.1 386593942 12703922 404972..405172 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sdy:SDY_3511 hypothetical protein; hypothetical protein 405172 12703922 EcDH1_0363 Escherichia coli DH1 hypothetical protein YP_006090342.1 404972 D 536056 CDS YP_006090343.1 386593943 12703923 405267..405857 1 NC_017625.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sbc:SbBS512_E3723 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; FKBP-type peptidylprolyl isomerase 405857 12703923 EcDH1_0364 Escherichia coli DH1 FKBP-type peptidylprolyl isomerase YP_006090343.1 405267 D 536056 CDS YP_006090344.1 386593944 12703924 complement(405906..406124) 1 NC_017625.1 PFAM: SlyX family protein; KEGG: sdy:SDY_3509 hypothetical protein; SlyX family protein 406124 12703924 EcDH1_0365 Escherichia coli DH1 SlyX family protein YP_006090344.1 405906 R 536056 CDS YP_006090345.1 386593945 12703925 406345..407157 1 NC_017625.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: sbo:SBO_3327 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidyl-prolyl isomerase domain-containing protein 407157 12703925 EcDH1_0366 Escherichia coli DH1 FKBP-type peptidyl-prolyl isomerase domain-containing protein YP_006090345.1 406345 D 536056 CDS YP_006090346.1 386593946 12703926 407324..408046 1 NC_017625.1 PFAM: YheO domain protein; KEGG: sbc:SbBS512_E3720 hypothetical protein; YheO domain-containing protein 408046 12703926 EcDH1_0367 Escherichia coli DH1 YheO domain-containing protein YP_006090346.1 407324 D 536056 CDS YP_006090347.1 386593947 12703927 408046..408432 1 NC_017625.1 TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: sdy:SDY_3506 hypothetical protein; sulfur relay protein TusD/DsrE 408432 12703927 EcDH1_0368 Escherichia coli DH1 sulfur relay protein TusD/DsrE YP_006090347.1 408046 D 536056 CDS YP_006090348.1 386593948 12703928 408432..408791 1 NC_017625.1 TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: ssn:SSON_3474 hypothetical protein; sulfur relay protein TusC/DsrF 408791 12703928 EcDH1_0369 Escherichia coli DH1 sulfur relay protein TusC/DsrF YP_006090348.1 408432 D 536056 CDS YP_006090349.1 386593949 12703929 408799..409086 1 NC_017625.1 TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: sbc:SbBS512_E3717 sulfur relay protein TusD/DsrH; sulfur relay protein TusB/DsrH 409086 12703929 EcDH1_0370 Escherichia coli DH1 sulfur relay protein TusB/DsrH YP_006090349.1 408799 D 536056 CDS YP_006090350.1 386593950 12703930 409212..409586 1 NC_017625.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: ent:Ent638_3759 30S ribosomal protein S12; 30S ribosomal protein S12 409586 12703930 EcDH1_0371 Escherichia coli DH1 30S ribosomal protein S12 YP_006090350.1 409212 D 536056 CDS YP_006090351.1 386593951 12703931 409683..410222 1 NC_017625.1 PFAM: ribosomal protein S7; KEGG: sfv:SFV_3346 30S ribosomal protein S7; 30S ribosomal protein S7 410222 12703931 EcDH1_0372 Escherichia coli DH1 30S ribosomal protein S7 YP_006090351.1 409683 D 536056 CDS YP_006090352.1 386593952 12703932 410250..412364 1 NC_017625.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: sdy:SDY_3501 elongation factor G; translation elongation factor G 412364 12703932 EcDH1_0373 Escherichia coli DH1 translation elongation factor G YP_006090352.1 410250 D 536056 CDS YP_006090353.1 386593953 12703933 412435..413619 1 NC_017625.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: ses:SARI_04181 elongation factor Tu; translation elongation factor Tu 413619 12703933 EcDH1_0374 Escherichia coli DH1 translation elongation factor Tu YP_006090353.1 412435 D 536056 CDS YP_006090354.1 386593954 12703934 413911..416604 1 NC_017625.1 PFAM: Carbohydrate-binding family V/XII; KEGG: cbh:CLC_1134 putative glycosyl hydrolase; lysozyme 416604 12703934 EcDH1_0375 Escherichia coli DH1 lysozyme YP_006090354.1 413911 D 536056 CDS YP_006090355.1 386593955 12703935 416773..416967 1 NC_017625.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cko:CKO_04744 bacterioferritin-associated ferredoxin; BFD (2Fe-2S)-binding domain-containing protein 416967 12703935 EcDH1_0376 Escherichia coli DH1 BFD (2Fe-2S)-binding domain-containing protein YP_006090355.1 416773 D 536056 CDS YP_006090356.1 386593956 12703936 417039..417515 1 NC_017625.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: ent:Ent638_3754 bacterioferritin, iron storage and detoxification protein; bacterioferritin 417515 12703936 EcDH1_0377 Escherichia coli DH1 bacterioferritin YP_006090356.1 417039 D 536056 CDS YP_006090357.1 386593957 12703937 complement(417544..418221) 1 NC_017625.1 PFAM: peptidase A24A prepilin type IV; KEGG: kpn:KPN_00149 pullulanase Q protein; peptidase A24A prepilin type IV 418221 12703937 EcDH1_0378 Escherichia coli DH1 peptidase A24A prepilin type IV YP_006090357.1 417544 R 536056 CDS YP_006090358.1 386593958 12703938 complement(418221..418682) 1 NC_017625.1 PFAM: General secretion pathway M protein; KEGG: yen:YE3573 putative general secretion pathway protein M; general secretion pathway protein M 418682 12703938 EcDH1_0379 Escherichia coli DH1 general secretion pathway protein M YP_006090358.1 418221 R 536056 CDS YP_006090359.1 386593959 12703939 complement(418679..419842) 1 NC_017625.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: cko:CKO_02220 hypothetical protein; general secretion pathway protein L 419842 12703939 EcDH1_0380 Escherichia coli DH1 general secretion pathway protein L YP_006090359.1 418679 R 536056 CDS YP_006090360.1 386593960 12703940 complement(419857..420840) 1 NC_017625.1 PFAM: General secretion pathway protein K; KEGG: eca:ECA3102 general secretion pathway protein K; General secretion pathway protein K 420840 12703940 EcDH1_0381 Escherichia coli DH1 General secretion pathway protein K YP_006090360.1 419857 R 536056 CDS YP_006090361.1 386593961 12703941 complement(420833..421420) 1 NC_017625.1 TIGRFAM: general secretion pathway protein J; KEGG: vpa:VP0139 general secretion pathway protein J; general secretion pathway protein J 421420 12703941 EcDH1_0382 Escherichia coli DH1 general secretion pathway protein J YP_006090361.1 420833 R 536056 CDS YP_006090362.1 386593962 12703942 complement(421413..421790) 1 NC_017625.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pap:PSPA7_2034 general secretion pathway protein I; general secretion pathway protein I 421790 12703942 EcDH1_0383 Escherichia coli DH1 general secretion pathway protein I YP_006090362.1 421413 R 536056 CDS YP_006090363.1 386593963 12703943 complement(421787..422296) 1 NC_017625.1 TIGRFAM: general secretion pathway protein H; KEGG: kpe:KPK_4580 pullulanase secretion protein PulH; general secretion pathway protein H 422296 12703943 EcDH1_0384 Escherichia coli DH1 general secretion pathway protein H YP_006090363.1 421787 R 536056 CDS YP_006090364.1 386593964 12703944 complement(422304..422741) 1 NC_017625.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: cko:CKO_02225 hypothetical protein; general secretion pathway protein G 422741 12703944 EcDH1_0385 Escherichia coli DH1 general secretion pathway protein G YP_006090364.1 422304 R 536056 CDS YP_006090365.1 386593965 12703945 complement(422751..423947) 1 NC_017625.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: cko:CKO_02226 hypothetical protein; general secretion pathway protein F 423947 12703945 EcDH1_0386 Escherichia coli DH1 general secretion pathway protein F YP_006090365.1 422751 R 536056 CDS YP_006090366.1 386593966 12703946 complement(423944..425425) 1 NC_017625.1 KEGG: cko:CKO_02227 hypothetical protein; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 425425 12703946 EcDH1_0387 Escherichia coli DH1 general secretory pathway protein E YP_006090366.1 423944 R 536056 CDS YP_006090367.1 386593967 12703947 complement(425435..427387) 1 NC_017625.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: cko:CKO_02228 hypothetical protein; general secretion pathway protein D 427387 12703947 EcDH1_0388 Escherichia coli DH1 general secretion pathway protein D YP_006090367.1 425435 R 536056 CDS YP_006090368.1 386593968 12703948 complement(427371..428186) 1 NC_017625.1 TIGRFAM: general secretion pathway protein C; KEGG: kpe:KPK_4575 pullulanase secretion envelope protein PulC; general secretion pathway protein C 428186 12703948 EcDH1_0389 Escherichia coli DH1 general secretion pathway protein C YP_006090368.1 427371 R 536056 CDS YP_006090369.1 386593969 12703949 428366..429835 1 NC_017625.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cko:CKO_02233 hypothetical protein; peptidoglycan-binding domain 1 protein 429835 12703949 EcDH1_0390 Escherichia coli DH1 peptidoglycan-binding domain 1 protein YP_006090369.1 428366 D 536056 CDS YP_006090370.1 386593970 12703950 429837..430256 1 NC_017625.1 KEGG: ssn:SSON_3463 chromosome replication protein PioO; chromosome replication protein PioO 430256 12703950 EcDH1_0391 Escherichia coli DH1 chromosome replication protein PioO YP_006090370.1 429837 D 536056 CDS YP_006090371.1 386593971 12703951 430494..430805 1 NC_017625.1 PFAM: ribosomal protein S10; KEGG: sdy:SDY_3497 30S ribosomal protein S10; 30S ribosomal protein S10 430805 12703951 EcDH1_0392 Escherichia coli DH1 30S ribosomal protein S10 YP_006090371.1 430494 D 536056 CDS YP_006090372.1 386593972 12703952 430838..431467 1 NC_017625.1 PFAM: ribosomal protein L3; KEGG: sdy:SDY_3496 50S ribosomal protein L3; 50S ribosomal protein L3 431467 12703952 EcDH1_0393 Escherichia coli DH1 50S ribosomal protein L3 YP_006090372.1 430838 D 536056 CDS YP_006090373.1 386593973 12703953 431478..432083 1 NC_017625.1 PFAM: ribosomal protein L4/L1e; KEGG: esa:ESA_00004 50S ribosomal protein L4; 50S ribosomal protein L4 432083 12703953 EcDH1_0394 Escherichia coli DH1 50S ribosomal protein L4 YP_006090373.1 431478 D 536056 CDS YP_006090374.1 386593974 12703954 432080..432382 1 NC_017625.1 PFAM: Ribosomal protein L25/L23; KEGG: sbc:SbBS512_E3703 ribosomal protein L23; 50S ribosomal protein L25 432382 12703954 EcDH1_0395 Escherichia coli DH1 50S ribosomal protein L25 YP_006090374.1 432080 D 536056 CDS YP_006090375.1 386593975 12703955 432400..433221 1 NC_017625.1 PFAM: ribosomal protein L2; KEGG: sbc:SbBS512_E3702 ribosomal protein L2; 50S ribosomal protein L2 433221 12703955 EcDH1_0396 Escherichia coli DH1 50S ribosomal protein L2 YP_006090375.1 432400 D 536056 CDS YP_006090376.1 386593976 12703956 433238..433516 1 NC_017625.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: sdy:SDY_3492 30S ribosomal protein S19; 30S ribosomal protein S19 433516 12703956 EcDH1_0397 Escherichia coli DH1 30S ribosomal protein S19 YP_006090376.1 433238 D 536056 CDS YP_006090377.1 386593977 12703957 433531..433863 1 NC_017625.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: esa:ESA_00010 50S ribosomal protein L22; 50S ribosomal protein L22 433863 12703957 EcDH1_0398 Escherichia coli DH1 50S ribosomal protein L22 YP_006090377.1 433531 D 536056 CDS YP_006090378.1 386593978 12703958 433881..434582 1 NC_017625.1 KEGG: ent:Ent638_3745 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 434582 12703958 EcDH1_0399 Escherichia coli DH1 30S ribosomal protein S3 YP_006090378.1 433881 D 536056 CDS YP_006090379.1 386593979 12703959 434595..435005 1 NC_017625.1 PFAM: ribosomal protein L16; KEGG: sdy:SDY_3489 50S ribosomal protein L16; 50S ribosomal protein L16 435005 12703959 EcDH1_0400 Escherichia coli DH1 50S ribosomal protein L16 YP_006090379.1 434595 D 536056 CDS YP_006090380.1 386593980 12703960 435005..435196 1 NC_017625.1 PFAM: ribosomal protein L29; KEGG: sbc:SbBS512_E3697 ribosomal protein L29; 50S ribosomal protein L29 435196 12703960 EcDH1_0401 Escherichia coli DH1 50S ribosomal protein L29 YP_006090380.1 435005 D 536056 CDS YP_006090381.1 386593981 12703961 435196..435450 1 NC_017625.1 PFAM: ribosomal protein S17; KEGG: esa:ESA_00014 30S ribosomal protein S17; 30S ribosomal protein S17 435450 12703961 EcDH1_0402 Escherichia coli DH1 30S ribosomal protein S17 YP_006090381.1 435196 D 536056 CDS YP_006090382.1 386593982 12703962 435615..435986 1 NC_017625.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: sdy:SDY_3486 50S ribosomal protein L14; 50S ribosomal protein L14 435986 12703962 EcDH1_0403 Escherichia coli DH1 50S ribosomal protein L14 YP_006090382.1 435615 D 536056 CDS YP_006090383.1 386593983 12703963 435997..436311 1 NC_017625.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: kpn:KPN_03708 50S ribosomal protein L24; 50S ribosomal protein L24 436311 12703963 EcDH1_0404 Escherichia coli DH1 50S ribosomal protein L24 YP_006090383.1 435997 D 536056 CDS YP_006090384.1 386593984 12703964 436326..436865 1 NC_017625.1 PFAM: ribosomal protein L5; KEGG: kpn:KPN_03707 50S ribosomal protein L5; 50S ribosomal protein L5 436865 12703964 EcDH1_0405 Escherichia coli DH1 50S ribosomal protein L5 YP_006090384.1 436326 D 536056 CDS YP_006090385.1 386593985 12703965 436880..437185 1 NC_017625.1 PFAM: ribosomal protein S14; KEGG: sdy:SDY_3483 30S ribosomal protein S14; 30S ribosomal protein S14 437185 12703965 EcDH1_0406 Escherichia coli DH1 30S ribosomal protein S14 YP_006090385.1 436880 D 536056 CDS YP_006090386.1 386593986 12703966 437219..437611 1 NC_017625.1 PFAM: ribosomal protein S8; KEGG: cko:CKO_04720 30S ribosomal protein S8; 30S ribosomal protein S8 437611 12703966 EcDH1_0407 Escherichia coli DH1 30S ribosomal protein S8 YP_006090386.1 437219 D 536056 CDS YP_006090387.1 386593987 12703967 437624..438157 1 NC_017625.1 TIGRFAM: ribosomal protein L6 signature 1; PFAM: ribosomal protein L6; KEGG: sdy:SDY_3481 50S ribosomal protein L6; ribosomal protein L6 signature 1 438157 12703967 EcDH1_0408 Escherichia coli DH1 ribosomal protein L6 signature 1 YP_006090387.1 437624 D 536056 CDS YP_006090388.1 386593988 12703968 438167..438520 1 NC_017625.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: cko:CKO_04717 50S ribosomal protein L18; 50S ribosomal protein L18 438520 12703968 EcDH1_0409 Escherichia coli DH1 50S ribosomal protein L18 YP_006090388.1 438167 D 536056 CDS YP_006090389.1 386593989 12703969 438535..439038 1 NC_017625.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: cko:CKO_04716 30S ribosomal protein S5; 30S ribosomal protein S5 439038 12703969 EcDH1_0410 Escherichia coli DH1 30S ribosomal protein S5 YP_006090389.1 438535 D 536056 CDS YP_006090390.1 386593990 12703970 439042..439221 1 NC_017625.1 PFAM: ribosomal protein L30; KEGG: sdy:SDY_3478 50S ribosomal protein L30; 50S ribosomal protein L30 439221 12703970 EcDH1_0411 Escherichia coli DH1 50S ribosomal protein L30 YP_006090390.1 439042 D 536056 CDS YP_006090391.1 386593991 12703971 439225..439659 1 NC_017625.1 PFAM: ribosomal protein L15; KEGG: sdy:SDY_3477 50S ribosomal protein L15; 50S ribosomal protein L15 439659 12703971 EcDH1_0412 Escherichia coli DH1 50S ribosomal protein L15 YP_006090391.1 439225 D 536056 CDS YP_006090392.1 386593992 12703972 439667..440998 1 NC_017625.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sbc:SbBS512_E3685 preprotein translocase, SecY subunit; preprotein translocase subunit SecY 440998 12703972 EcDH1_0413 Escherichia coli DH1 preprotein translocase subunit SecY YP_006090392.1 439667 D 536056 CDS YP_006090393.1 386593993 12703973 441030..441146 1 NC_017625.1 PFAM: ribosomal protein L36; KEGG: esa:ESA_00028 50S ribosomal protein L36; 50S ribosomal protein L36 441146 12703973 EcDH1_0414 Escherichia coli DH1 50S ribosomal protein L36 YP_006090393.1 441030 D 536056 CDS YP_006090394.1 386593994 12703974 441293..441649 1 NC_017625.1 TIGRFAM: short-chain dehydrogenase/reductase SDR; PFAM: ribosomal protein S13; KEGG: sdy:SDY_3474 30S ribosomal protein S13; short-chain dehydrogenase/reductase SDR 441649 12703974 EcDH1_0415 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006090394.1 441293 D 536056 CDS YP_006090395.1 386593995 12703975 441666..442055 1 NC_017625.1 PFAM: ribosomal protein S11; KEGG: sdy:SDY_3473 30S ribosomal protein S11; 30S ribosomal protein S11 442055 12703975 EcDH1_0416 Escherichia coli DH1 30S ribosomal protein S11 YP_006090395.1 441666 D 536056 CDS YP_006090396.1 386593996 12703976 442089..442709 1 NC_017625.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: sdy:SDY_3472 30S ribosomal protein S4; 30S ribosomal protein S4 442709 12703976 EcDH1_0417 Escherichia coli DH1 30S ribosomal protein S4 YP_006090396.1 442089 D 536056 CDS YP_006090397.1 386593997 12703977 442735..443724 1 NC_017625.1 KEGG: sbc:SbBS512_E3681 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; RNA polymerase insert; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 443724 12703977 EcDH1_0418 Escherichia coli DH1 DNA-directed RNA polymerase subunit alpha YP_006090397.1 442735 D 536056 CDS YP_006090398.1 386593998 12703978 443765..444148 1 NC_017625.1 PFAM: ribosomal protein L17; KEGG: sdy:SDY_3470 50S ribosomal protein L17; 50S ribosomal protein L17 444148 12703978 EcDH1_0419 Escherichia coli DH1 50S ribosomal protein L17 YP_006090398.1 443765 D 536056 CDS YP_006090399.1 386593999 12703979 444255..444623 1 NC_017625.1 KEGG: ssn:SSON_3434 hypothetical protein; hypothetical protein 444623 12703979 EcDH1_0420 Escherichia coli DH1 hypothetical protein YP_006090399.1 444255 D 536056 CDS YP_006090400.1 386594000 12703980 444634..445059 1 NC_017625.1 TIGRFAM: Zn(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sdy:SDY_3468 zinc-responsive transcriptional regulator; MerR family transcriptional regulator 445059 12703980 EcDH1_0421 Escherichia coli DH1 MerR family transcriptional regulator YP_006090400.1 444634 D 536056 CDS YP_006090401.1 386594001 12703981 445115..445333 1 NC_017625.1 PFAM: protein of unknown function DUF331; KEGG: ssn:SSON_3432 hypothetical protein; hypothetical protein 445333 12703981 EcDH1_0422 Escherichia coli DH1 hypothetical protein YP_006090401.1 445115 D 536056 CDS YP_006090402.1 386594002 12703982 complement(445330..445740) 1 NC_017625.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: sbc:SbBS512_E3677 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein 445740 12703982 EcDH1_0423 Escherichia coli DH1 large conductance mechanosensitive channel protein YP_006090402.1 445330 R 536056 CDS YP_006090403.1 386594003 12703983 complement(445870..447246) 1 NC_017625.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sbc:SbBS512_E3674 trk system potassium uptake protein TrkA; TrkA-N domain-containing protein 447246 12703983 EcDH1_0424 Escherichia coli DH1 TrkA-N domain-containing protein YP_006090403.1 445870 R 536056 CDS YP_006090404.1 386594004 12703984 complement(447268..448557) 1 NC_017625.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sbo:SBO_3282 16S rRNA methyltransferase B; sun protein 448557 12703984 EcDH1_0425 Escherichia coli DH1 sun protein YP_006090404.1 447268 R 536056 CDS YP_006090405.1 386594005 12703985 complement(448603..449550) 1 NC_017625.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: sdy:SDY_3464 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 449550 12703985 EcDH1_0426 Escherichia coli DH1 methionyl-tRNA formyltransferase YP_006090405.1 448603 R 536056 CDS YP_006090406.1 386594006 12703986 complement(449565..450074) 1 NC_017625.1 KEGG: sdy:SDY_3463 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 450074 12703986 EcDH1_0427 Escherichia coli DH1 peptide deformylase YP_006090406.1 449565 R 536056 CDS YP_006090407.1 386594007 12703987 450204..451328 1 NC_017625.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sbc:SbBS512_E3670 DNA protecting protein DprA; DNA protecting protein DprA 451328 12703987 EcDH1_0428 Escherichia coli DH1 DNA protecting protein DprA YP_006090407.1 450204 D 536056 CDS YP_006090408.1 386594008 12703988 451300..451773 1 NC_017625.1 PFAM: protein of unknown function DUF494; KEGG: sbo:SBO_3278 hypothetical protein; hypothetical protein 451773 12703988 EcDH1_0429 Escherichia coli DH1 hypothetical protein YP_006090408.1 451300 D 536056 CDS YP_006090409.1 386594009 12703989 451802..452344 1 NC_017625.1 PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: sdy:SDY_3460 putative DNA topoisomerase; DNA topoisomerase type IA zn finger domain-containing protein 452344 12703989 EcDH1_0430 Escherichia coli DH1 DNA topoisomerase type IA zn finger domain-containing protein YP_006090409.1 451802 D 536056 CDS YP_006090410.1 386594010 12703990 452349..452921 1 NC_017625.1 PFAM: SUA5/yciO/yrdC domain; KEGG: sbc:SbBS512_E3667 SUA5/YciO/YrdC/YwlC family protein; SUA5/yciO/yrdC domain-containing protein 452921 12703990 EcDH1_0431 Escherichia coli DH1 SUA5/yciO/yrdC domain-containing protein YP_006090410.1 452349 D 536056 CDS YP_006090411.1 386594011 12703991 452926..453744 1 NC_017625.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: sfx:S3537 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 453744 12703991 EcDH1_0432 Escherichia coli DH1 shikimate 5-dehydrogenase YP_006090411.1 452926 D 536056 CDS YP_006090412.1 386594012 12703992 453741..453998 1 NC_017625.1 PFAM: protein of unknown function DUF1488; KEGG: sbc:SbBS512_E3664 hypothetical protein; hypothetical protein 453998 12703992 EcDH1_0433 Escherichia coli DH1 hypothetical protein YP_006090412.1 453741 D 536056 CDS YP_006090413.1 386594013 12703993 complement(453974..454528) 1 NC_017625.1 KEGG: ssn:SSON_3420 putative transferase; putative transferase 454528 12703993 EcDH1_0434 Escherichia coli DH1 putative transferase YP_006090413.1 453974 R 536056 CDS YP_006090414.1 386594014 12704001 complement(460570..461328) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_3265 putative ATP-binding component of a transport system; ABC transporter 461328 12704001 EcDH1_0435 Escherichia coli DH1 ABC transporter YP_006090414.1 460570 R 536056 CDS YP_006090415.1 386594015 12704002 complement(461336..462439) 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_3447 putative transport system permease protein; polar amino acid ABC transporter inner membrane subunit 462439 12704002 EcDH1_0436 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006090415.1 461336 R 536056 CDS YP_006090416.1 386594016 12704003 complement(462449..463630) 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cko:CKO_04682 hypothetical protein; polar amino acid ABC transporter inner membrane subunit 463630 12704003 EcDH1_0437 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006090416.1 462449 R 536056 CDS YP_006090417.1 386594017 12704005 complement(465153..465374) 1 NC_017625.1 KEGG: sbc:SbBS512_E3650 putative lipoprotein; putative lipoprotein 465374 12704005 EcDH1_0439 Escherichia coli DH1 putative lipoprotein YP_006090417.1 465153 R 536056 CDS YP_006090418.1 386594018 12704006 complement(465627..468731) 1 NC_017625.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sbo:SBO_3260 integral transmembrane protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 468731 12704006 EcDH1_0440 Escherichia coli DH1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_006090418.1 465627 R 536056 CDS YP_006090419.1 386594019 12704007 complement(468743..469900) 1 NC_017625.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E3648 acriflavine resistance protein E; RND family efflux transporter MFP subunit 469900 12704007 EcDH1_0441 Escherichia coli DH1 RND family efflux transporter MFP subunit YP_006090419.1 468743 R 536056 CDS YP_006090420.1 386594020 12704008 470299..470961 1 NC_017625.1 PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: sbc:SbBS512_E3647 putative transcriptional regulator EnvR; TetR family transcriptional regulator 470961 12704008 EcDH1_0442 Escherichia coli DH1 TetR family transcriptional regulator YP_006090420.1 470299 D 536056 CDS YP_006090421.1 386594021 12704009 complement(470964..471143) 1 NC_017625.1 KEGG: sbc:SbBS512_E3646 hypothetical protein; hypothetical protein 471143 12704009 EcDH1_0443 Escherichia coli DH1 hypothetical protein YP_006090421.1 470964 R 536056 CDS YP_006090422.1 386594022 12704010 complement(471227..472111) 1 NC_017625.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sbc:SbBS512_E3645 DNA methylase, N4/N6-methyltransferase family; DNA methylase N-4/N-6 domain-containing protein 472111 12704010 EcDH1_0444 Escherichia coli DH1 DNA methylase N-4/N-6 domain-containing protein YP_006090422.1 471227 R 536056 CDS YP_006090423.1 386594023 12704011 complement(472197..472493) 1 NC_017625.1 PFAM: helix-turn-helix Fis-type; KEGG: spe:Spro_4424 DNA-binding protein fis; Fis family transcriptional regulator 472493 12704011 EcDH1_0445 Escherichia coli DH1 Fis family transcriptional regulator YP_006090423.1 472197 R 536056 CDS YP_006090424.1 386594024 12704012 complement(472519..473484) 1 NC_017625.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: sdy:SDY_3437 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein 473484 12704012 EcDH1_0446 Escherichia coli DH1 nifR3 family TIM-barrel protein YP_006090424.1 472519 R 536056 CDS YP_006090425.1 386594025 12704013 complement(473813..474694) 1 NC_017625.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 12; KEGG: sdy:SDY_3436 ribosomal protein L11 methyltransferase; 50S ribosomal protein L11 methyltransferase 474694 12704013 EcDH1_0447 Escherichia coli DH1 50S ribosomal protein L11 methyltransferase YP_006090425.1 473813 R 536056 CDS YP_006090426.1 386594026 12704014 complement(474706..476157) 1 NC_017625.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/pantothenate symporter; PFAM: Na+/solute symporter; KEGG: ssn:SSON_3399 sodium/panthothenate symporter; sodium/pantothenate symporter 476157 12704014 EcDH1_0448 Escherichia coli DH1 sodium/pantothenate symporter YP_006090426.1 474706 R 536056 CDS YP_006090427.1 386594027 12704015 complement(476147..476389) 1 NC_017625.1 PFAM: protein of unknown function DUF997; KEGG: sdy:SDY_3434 hypothetical protein; hypothetical protein 476389 12704015 EcDH1_0449 Escherichia coli DH1 hypothetical protein YP_006090427.1 476147 R 536056 CDS YP_006090428.1 386594028 12704016 complement(476498..477847) 1 NC_017625.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sdy:SDY_3433 acetyl-CoA carboxylase biotin carboxylase subunit; acetyl-CoA carboxylase, biotin carboxylase 477847 12704016 EcDH1_0450 Escherichia coli DH1 acetyl-CoA carboxylase, biotin carboxylase YP_006090428.1 476498 R 536056 CDS YP_006090429.1 386594029 12704017 complement(477858..478328) 1 NC_017625.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sbc:SbBS512_E3287 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 478328 12704017 EcDH1_0451 Escherichia coli DH1 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_006090429.1 477858 R 536056 CDS YP_006090430.1 386594030 12704018 478470..478631 1 NC_017625.1 hypothetical protein 478631 12704018 EcDH1_0452 Escherichia coli DH1 hypothetical protein YP_006090430.1 478470 D 536056 CDS YP_006090431.1 386594031 12704020 complement(479306..480280) 1 NC_017625.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_3394 putative dehydrogenase; YhdH/YhfP family quinone oxidoreductase 480280 12704020 EcDH1_0454 Escherichia coli DH1 YhdH/YhfP family quinone oxidoreductase YP_006090431.1 479306 R 536056 CDS YP_006090432.1 386594032 12704021 480432..482372 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ssn:SSON_3393 regulatory protein CsrD; diguanylate cyclase/phosphodiesterase 482372 12704021 EcDH1_0455 Escherichia coli DH1 diguanylate cyclase/phosphodiesterase YP_006090432.1 480432 D 536056 CDS YP_006090433.1 386594033 12704022 482677..483720 1 NC_017625.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: ent:Ent638_3687 rod shape-determining protein MreB; MreB/Mrl family cell shape determining protein 483720 12704022 EcDH1_0456 Escherichia coli DH1 MreB/Mrl family cell shape determining protein YP_006090433.1 482677 D 536056 CDS YP_006090434.1 386594034 12704023 483786..484889 1 NC_017625.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: sdy:SDY_3425 cell wall structural complex MreBCD transmembrane component MreC; rod shape-determining protein MreC 484889 12704023 EcDH1_0457 Escherichia coli DH1 rod shape-determining protein MreC YP_006090434.1 483786 D 536056 CDS YP_006090435.1 386594035 12704024 484889..485377 1 NC_017625.1 TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: sbc:SbBS512_E3280 rod shape-determining protein MreD; rod shape-determining protein MreD 485377 12704024 EcDH1_0458 Escherichia coli DH1 rod shape-determining protein MreD YP_006090435.1 484889 D 536056 CDS YP_006090436.1 386594036 12704025 485386..485979 1 NC_017625.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ssn:SSON_3389 Maf-like protein; maf protein 485979 12704025 EcDH1_0459 Escherichia coli DH1 maf protein YP_006090436.1 485386 D 536056 CDS YP_006090437.1 386594037 12704026 485969..487438 1 NC_017625.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: sdy:SDY_3422 ribonuclease G; ribonuclease, Rne/Rng family 487438 12704026 EcDH1_0460 Escherichia coli DH1 ribonuclease, Rne/Rng family YP_006090437.1 485969 D 536056 CDS YP_006090438.1 386594038 12704027 487506..491306 1 NC_017625.1 KEGG: ssn:SSON_3387 hypothetical protein; hypothetical protein 491306 12704027 EcDH1_0461 Escherichia coli DH1 hypothetical protein YP_006090438.1 487506 D 536056 CDS YP_006090439.1 386594039 12704028 491736..493181 1 NC_017625.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sfv:SFV_3271 protease TldD; peptidase U62 modulator of DNA gyrase 493181 12704028 EcDH1_0462 Escherichia coli DH1 peptidase U62 modulator of DNA gyrase YP_006090439.1 491736 D 536056 CDS YP_006090440.1 386594040 12704029 complement(493315..494244) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_3144 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 494244 12704029 EcDH1_0463 Escherichia coli DH1 LysR family transcriptional regulator YP_006090440.1 493315 R 536056 CDS YP_006090441.1 386594041 12704030 494427..494630 1 NC_017625.1 PFAM: protein of unknown function DUF1656; KEGG: sdy:SDY_3418 hypothetical protein; hypothetical protein 494630 12704030 EcDH1_0464 Escherichia coli DH1 hypothetical protein YP_006090441.1 494427 D 536056 CDS YP_006090442.1 386594042 12704031 494638..495570 1 NC_017625.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfv:SFV_3268 p-hydroxybenzoic acid efflux subunit AaeA; RND family efflux transporter MFP subunit 495570 12704031 EcDH1_0465 Escherichia coli DH1 RND family efflux transporter MFP subunit YP_006090442.1 494638 D 536056 CDS YP_006090443.1 386594043 12704032 495576..497543 1 NC_017625.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: sfv:SFV_3267 p-hydroxybenzoic acid efflux subunit AaeB; fusaric acid resistance protein 497543 12704032 EcDH1_0466 Escherichia coli DH1 fusaric acid resistance protein YP_006090443.1 495576 D 536056 CDS YP_006090444.1 386594044 12704033 497635..497907 1 NC_017625.1 PFAM: Barstar (barnase inhibitor); KEGG: sbc:SbBS512_E3537 hypothetical protein; barnase inhibitor 497907 12704033 EcDH1_0467 Escherichia coli DH1 barnase inhibitor YP_006090444.1 497635 D 536056 CDS YP_006090445.1 386594045 12704034 complement(497963..498226) 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E3538 protein YcfR; hypothetical protein 498226 12704034 EcDH1_0468 Escherichia coli DH1 hypothetical protein YP_006090445.1 497963 R 536056 CDS YP_006090446.1 386594046 12704035 complement(498591..499061) 1 NC_017625.1 PFAM: arginine repressor; KEGG: sdy:SDY_3413 arginine repressor; arginine repressor ArgR 499061 12704035 EcDH1_0469 Escherichia coli DH1 arginine repressor ArgR YP_006090446.1 498591 R 536056 CDS YP_006090447.1 386594047 12704036 499496..500434 1 NC_017625.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: sbc:SbBS512_E3540 malate dehydrogenase, NAD-dependent; malate dehydrogenase 500434 12704036 EcDH1_0470 Escherichia coli DH1 malate dehydrogenase YP_006090447.1 499496 D 536056 CDS YP_006090448.1 386594048 12704037 complement(500497..501564) 1 NC_017625.1 TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: sdy:SDY_3411 serine endoprotease; periplasmic serine protease DegS 501564 12704037 EcDH1_0471 Escherichia coli DH1 periplasmic serine protease DegS YP_006090448.1 500497 R 536056 CDS YP_006090449.1 386594049 12704038 complement(501654..503021) 1 NC_017625.1 KEGG: sbc:SbBS512_E3542 serine peptidase DegQ; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 503021 12704038 EcDH1_0472 Escherichia coli DH1 protease Do YP_006090449.1 501654 R 536056 CDS YP_006090450.1 386594050 12704039 complement(503175..503573) 1 NC_017625.1 PFAM: protein of unknown function DUF1043; KEGG: sbc:SbBS512_E3543 hypothetical protein; hypothetical protein 503573 12704039 EcDH1_0473 Escherichia coli DH1 hypothetical protein YP_006090450.1 503175 R 536056 CDS YP_006090451.1 386594051 12704040 503767..504894 1 NC_017625.1 PFAM: AFG1-family ATPase; KEGG: ssn:SSON_3373 hypothetical protein; AFG1 family ATPase 504894 12704040 EcDH1_0474 Escherichia coli DH1 AFG1 family ATPase YP_006090451.1 503767 D 536056 CDS YP_006090452.1 386594052 12704041 505113..505541 1 NC_017625.1 PFAM: ribosomal protein L13; KEGG: sfv:SFV_3258 50S ribosomal protein L13; 50S ribosomal protein L13 505541 12704041 EcDH1_0475 Escherichia coli DH1 50S ribosomal protein L13 YP_006090452.1 505113 D 536056 CDS YP_006090453.1 386594053 12704042 505557..505949 1 NC_017625.1 PFAM: ribosomal protein S9; KEGG: kpn:KPN_03629 30S ribosomal protein S9; 30S ribosomal protein S9 505949 12704042 EcDH1_0476 Escherichia coli DH1 30S ribosomal protein S9 YP_006090453.1 505557 D 536056 CDS YP_006090454.1 386594054 12704043 506344..506982 1 NC_017625.1 PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E3547 stringent starvation protein A; glutathione S-transferase 506982 12704043 EcDH1_0477 Escherichia coli DH1 glutathione S-transferase YP_006090454.1 506344 D 536056 CDS YP_006090455.1 386594055 12704044 506988..507485 1 NC_017625.1 PFAM: Stringent starvation protein B; KEGG: sbo:SBO_3161 ClpXP protease specificity-enhancing factor; stringent starvation protein B 507485 12704044 EcDH1_0478 Escherichia coli DH1 stringent starvation protein B YP_006090455.1 506988 D 536056 CDS YP_006090456.1 386594056 12704045 complement(507528..508895) 1 NC_017625.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; KEGG: sfx:S3482 putative cryptic C4-dicarboxylate transporter DcuD; anaerobic c4-dicarboxylate antiporter 508895 12704045 EcDH1_0479 Escherichia coli DH1 anaerobic c4-dicarboxylate antiporter YP_006090456.1 507528 R 536056 CDS YP_006090457.1 386594057 12704046 509275..510066 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbo:SBO_3163 transcriptional regulator NanR; regulatory protein GntR HTH 510066 12704046 EcDH1_0480 Escherichia coli DH1 regulatory protein GntR HTH YP_006090457.1 509275 D 536056 CDS YP_006090458.1 386594058 12704047 510188..511081 1 NC_017625.1 TIGRFAM: N-acetylneuraminate lyase; PFAM: dihydrodipicolinate synthetase; KEGG: sdy:SDY_3400 N-acetylneuraminate lyase; N-acetylneuraminate lyase 511081 12704047 EcDH1_0481 Escherichia coli DH1 N-acetylneuraminate lyase YP_006090458.1 510188 D 536056 CDS YP_006090459.1 386594059 12704048 511190..512680 1 NC_017625.1 TIGRFAM: sialic acid transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3552 MFS transporter, sialate:H+ symporter (SHS) family; sialic acid transporter 512680 12704048 EcDH1_0482 Escherichia coli DH1 sialic acid transporter YP_006090459.1 511190 D 536056 CDS YP_006090460.1 386594060 12704049 512728..513417 1 NC_017625.1 PFAM: putative N-acetylmannosamine-6-phosphate epimerase; KEGG: sbc:SbBS512_E3553 putative N-acetylmannosamine-6-phosphate 2-epimerase; N-acylglucosamine-6-phosphate 2-epimerase 513417 12704049 EcDH1_0483 Escherichia coli DH1 N-acylglucosamine-6-phosphate 2-epimerase YP_006090460.1 512728 D 536056 CDS YP_006090461.1 386594061 12704050 513414..514289 1 NC_017625.1 PFAM: ROK family protein; KEGG: sfv:SFV_3247 N-acetylmannosamine kinase; ROK family protein 514289 12704050 EcDH1_0484 Escherichia coli DH1 ROK family protein YP_006090461.1 513414 D 536056 CDS YP_006090462.1 386594062 12704051 514286..514750 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E3555 hypothetical protein; hypothetical protein 514750 12704051 EcDH1_0485 Escherichia coli DH1 hypothetical protein YP_006090462.1 514286 D 536056 CDS YP_006090463.1 386594063 12704052 complement(514810..515937) 1 NC_017625.1 PFAM: protein of unknown function DUF1016; KEGG: sdy:SDY_3395 hypothetical protein; hypothetical protein 515937 12704052 EcDH1_0486 Escherichia coli DH1 hypothetical protein YP_006090463.1 514810 R 536056 CDS YP_006090464.1 386594064 12704053 complement(516122..516838) 1 NC_017625.1 PFAM: protein of unknown function DUF1120; KEGG: sea:SeAg_B4896 putative outer membrane protein; hypothetical protein 516838 12704053 EcDH1_0487 Escherichia coli DH1 hypothetical protein YP_006090464.1 516122 R 536056 CDS YP_006090465.1 386594065 12704054 complement(516835..517056) 1 NC_017625.1 hypothetical protein 517056 12704054 EcDH1_0488 Escherichia coli DH1 hypothetical protein YP_006090465.1 516835 R 536056 CDS YP_006090466.1 386594066 12704055 517082..518062 1 NC_017625.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 518062 12704055 EcDH1_0489 Escherichia coli DH1 transposase IS4 family protein YP_006090466.1 517082 D 536056 CDS YP_006090467.1 386594067 12704056 complement(518100..518579) 1 NC_017625.1 KEGG: sao:SAOUHSC_A00747 hypothetical protein; hypothetical protein 518579 12704056 EcDH1_0490 Escherichia coli DH1 hypothetical protein YP_006090467.1 518100 R 536056 CDS YP_006090468.1 386594068 12704057 complement(518576..520957) 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: esa:ESA_03515 hypothetical protein; fimbrial biogenesis outer membrane usher protein 520957 12704057 EcDH1_0491 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006090468.1 518576 R 536056 CDS YP_006090469.1 386594069 12704058 complement(520978..521652) 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: stm:STM4573 putative periplasmic chaperone protein; Pili assembly chaperone, N-terminal 521652 12704058 EcDH1_0492 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006090469.1 520978 R 536056 CDS YP_006090470.1 386594070 12704059 complement(521824..522588) 1 NC_017625.1 PFAM: protein of unknown function DUF1120; KEGG: esa:ESA_03519 hypothetical protein; hypothetical protein 522588 12704059 EcDH1_0493 Escherichia coli DH1 hypothetical protein YP_006090470.1 521824 R 536056 CDS YP_006090471.1 386594071 12704060 complement(523148..524566) 1 NC_017625.1 TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E3557 glutamate synthase (NADPH), small subunit; glutamate synthase, small subunit 524566 12704060 EcDH1_0494 Escherichia coli DH1 glutamate synthase, small subunit YP_006090471.1 523148 R 536056 CDS YP_006090472.1 386594072 12704061 complement(524579..529132) 1 NC_017625.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sbo:SBO_3170 glutamate synthase subunit alpha; glutamate synthase (ferredoxin) 529132 12704061 EcDH1_0495 Escherichia coli DH1 glutamate synthase (ferredoxin) YP_006090472.1 524579 R 536056 CDS YP_006090473.1 386594073 12704062 529714..530643 1 NC_017625.1 KEGG: sbo:SBO_3171 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 530643 12704062 EcDH1_0496 Escherichia coli DH1 hypothetical protein YP_006090473.1 529714 D 536056 CDS YP_006090474.1 386594074 12704063 530739..533075 1 NC_017625.1 KEGG: sbo:SBO_3172 aerobic respiration control sensor protein ArcB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 533075 12704063 EcDH1_0497 Escherichia coli DH1 multi-sensor hybrid histidine kinase YP_006090474.1 530739 D 536056 CDS YP_006090475.1 386594075 12704064 533305..533958 1 NC_017625.1 PFAM: ThiJ/PfpI domain protein; KEGG: sfv:SFV_3239 isoprenoid biosynthesis protein; ThiJ/PfpI domain-containing protein 533958 12704064 EcDH1_0498 Escherichia coli DH1 ThiJ/PfpI domain-containing protein YP_006090475.1 533305 D 536056 CDS YP_006090476.1 386594076 12704065 533955..534683 1 NC_017625.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: sdy:SDY_3389 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 534683 12704065 EcDH1_0499 Escherichia coli DH1 monofunctional biosynthetic peptidoglycan transglycosylase YP_006090476.1 533955 D 536056 CDS YP_006090477.1 386594077 12704066 complement(534680..535312) 1 NC_017625.1 KEGG: sfx:S3465 hypothetical protein; hypothetical protein 535312 12704066 EcDH1_0500 Escherichia coli DH1 hypothetical protein YP_006090477.1 534680 R 536056 CDS YP_006090478.1 386594078 12704067 complement(535526..535798) 1 NC_017625.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: sdy:SDY_3387 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); phosphocarrier, Hpr family 535798 12704067 EcDH1_0501 Escherichia coli DH1 phosphocarrier, Hpr family YP_006090478.1 535526 R 536056 CDS YP_006090479.1 386594079 12704068 complement(535795..536649) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E3565 hypothetical protein; hypothetical protein 536649 12704068 EcDH1_0502 Escherichia coli DH1 hypothetical protein YP_006090479.1 535795 R 536056 CDS YP_006090480.1 386594080 12704069 complement(536695..537186) 1 NC_017625.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sbc:SbBS512_E3566 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 537186 12704069 EcDH1_0503 Escherichia coli DH1 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_006090480.1 536695 R 536056 CDS YP_006090481.1 386594081 12704070 complement(537304..537591) 1 NC_017625.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sdy:SDY_3384 putative sigma(54) modulation protein; sigma 54 modulation protein/ribosomal protein S30EA 537591 12704070 EcDH1_0504 Escherichia coli DH1 sigma 54 modulation protein/ribosomal protein S30EA YP_006090481.1 537304 R 536056 CDS YP_006090482.1 386594082 12704071 complement(537614..539047) 1 NC_017625.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: sfx:S3460 RNA polymerase factor sigma-54; RNA polymerase sigma 54 subunit RpoN 539047 12704071 EcDH1_0505 Escherichia coli DH1 RNA polymerase sigma 54 subunit RpoN YP_006090482.1 537614 R 536056 CDS YP_006090483.1 386594083 12704072 complement(539095..539820) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_3382 putative ABC transporter ATP-binding protein YhbG; ABC transporter 539820 12704072 EcDH1_0506 Escherichia coli DH1 ABC transporter YP_006090483.1 539095 R 536056 CDS YP_006090484.1 386594084 12704073 complement(539827..540384) 1 NC_017625.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: sdy:SDY_3381 hypothetical protein; lipopolysaccharide transport periplasmic protein LptA 540384 12704073 EcDH1_0507 Escherichia coli DH1 lipopolysaccharide transport periplasmic protein LptA YP_006090484.1 539827 R 536056 CDS YP_006090485.1 386594085 12704074 complement(540353..540928) 1 NC_017625.1 PFAM: protein of unknown function DUF1239; KEGG: sdy:SDY_3380 hypothetical protein; hypothetical protein 540928 12704074 EcDH1_0508 Escherichia coli DH1 hypothetical protein YP_006090485.1 540353 R 536056 CDS YP_006090486.1 386594086 12704075 complement(540925..541491) 1 NC_017625.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: sdy:SDY_3379 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 541491 12704075 EcDH1_0509 Escherichia coli DH1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_006090486.1 540925 R 536056 CDS YP_006090487.1 386594087 12704076 complement(541512..542498) 1 NC_017625.1 KEGG: sbc:SbBS512_E3573 arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 542498 12704076 EcDH1_0510 Escherichia coli DH1 KpsF/GutQ family protein YP_006090487.1 541512 R 536056 CDS YP_006090488.1 386594088 12704077 complement(542512..543489) 1 NC_017625.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: sbo:SBO_3186 putative calcium/sodium:proton antiporter; CaCA family Na+/Ca+ antiporter 543489 12704077 EcDH1_0511 Escherichia coli DH1 CaCA family Na+/Ca+ antiporter YP_006090488.1 542512 R 536056 CDS YP_006090489.1 386594089 12704078 543699..544508 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_3376 putative ABC transporter ATP-binding protein YrbF; ABC transporter 544508 12704078 EcDH1_0512 Escherichia coli DH1 ABC transporter YP_006090489.1 543699 D 536056 CDS YP_006090490.1 386594090 12704079 544516..545298 1 NC_017625.1 PFAM: protein of unknown function DUF140; KEGG: sbc:SbBS512_E3576 toluene ABC transporter, permease protein; hypothetical protein 545298 12704079 EcDH1_0513 Escherichia coli DH1 hypothetical protein YP_006090490.1 544516 D 536056 CDS YP_006090491.1 386594091 12704080 545303..545854 1 NC_017625.1 PFAM: Mammalian cell entry related domain protein; KEGG: sbc:SbBS512_E3577 Mce family protein; Mammalian cell entry related domain-containing protein 545854 12704080 EcDH1_0514 Escherichia coli DH1 Mammalian cell entry related domain-containing protein YP_006090491.1 545303 D 536056 CDS YP_006090492.1 386594092 12704081 545873..546508 1 NC_017625.1 PFAM: toluene tolerance family protein; KEGG: sbc:SbBS512_E3578 toluene tolerance protein Ttg2D; toluene tolerance family protein 546508 12704081 EcDH1_0515 Escherichia coli DH1 toluene tolerance family protein YP_006090492.1 545873 D 536056 CDS YP_006090493.1 386594093 12704082 546508..546801 1 NC_017625.1 KEGG: sdy:SDY_3372 hypothetical protein; hypothetical protein 546801 12704082 EcDH1_0516 Escherichia coli DH1 hypothetical protein YP_006090493.1 546508 D 536056 CDS YP_006090494.1 386594094 12704083 546946..547215 1 NC_017625.1 PFAM: BolA family protein; KEGG: sdy:SDY_3371 hypothetical protein; BolA family protein 547215 12704083 EcDH1_0517 Escherichia coli DH1 BolA family protein YP_006090494.1 546946 D 536056 CDS YP_006090495.1 386594095 12704084 547270..548529 1 NC_017625.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: ssn:SSON_3337 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 548529 12704084 EcDH1_0518 Escherichia coli DH1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_006090495.1 547270 D 536056 CDS YP_006090496.1 386594096 12704085 complement(548577..548855) 1 NC_017625.1 KEGG: ssn:SSON_3336 DNA-binding transcriptional activator of maltose metabolism; transcriptional regulator Nlp 548855 12704085 EcDH1_0519 Escherichia coli DH1 transcriptional regulator Nlp YP_006090496.1 548577 R 536056 CDS YP_006090497.1 386594097 12704086 complement(549083..550054) 1 NC_017625.1 PFAM: Polyprenyl synthetase; KEGG: sbo:SBO_3195 octaprenyl diphosphate synthase; polyprenyl synthetase 550054 12704086 EcDH1_0520 Escherichia coli DH1 polyprenyl synthetase YP_006090497.1 549083 R 536056 CDS YP_006090498.1 386594098 12704087 550313..550624 1 NC_017625.1 PFAM: ribosomal protein L21; KEGG: sdy:SDY_3367 50S ribosomal protein L21; 50S ribosomal protein L21 550624 12704087 EcDH1_0521 Escherichia coli DH1 50S ribosomal protein L21 YP_006090498.1 550313 D 536056 CDS YP_006090499.1 386594099 12704088 550645..550902 1 NC_017625.1 PFAM: ribosomal protein L27; KEGG: sdy:SDY_3366 50S ribosomal protein L27; 50S ribosomal protein L27 550902 12704088 EcDH1_0522 Escherichia coli DH1 50S ribosomal protein L27 YP_006090499.1 550645 D 536056 CDS YP_006090500.1 386594100 12704089 551029..551994 1 NC_017625.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbo:SBO_3198 hypothetical protein; hypothetical protein 551994 12704089 EcDH1_0523 Escherichia coli DH1 hypothetical protein YP_006090500.1 551029 D 536056 CDS YP_006090501.1 386594101 12704090 552010..553182 1 NC_017625.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: sbc:SbBS512_E3587 GTP-binding protein Obg/CgtA; GTP-binding protein Obg/CgtA 553182 12704090 EcDH1_0524 Escherichia coli DH1 GTP-binding protein Obg/CgtA YP_006090501.1 552010 D 536056 CDS YP_006090502.1 386594102 12704091 complement(553368..554801) 1 NC_017625.1 KEGG: sbc:SbBS512_E3588 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 554801 12704091 EcDH1_0525 Escherichia coli DH1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_006090502.1 553368 R 536056 CDS YP_006090503.1 386594103 12704092 555049..555525 1 NC_017625.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: sdy:SDY_3362 transcription elongation factor GreA; transcription elongation factor GreA 555525 12704092 EcDH1_0526 Escherichia coli DH1 transcription elongation factor GreA YP_006090503.1 555049 D 536056 CDS YP_006090504.1 386594104 12704093 complement(555681..555974) 1 NC_017625.1 PFAM: protein of unknown function UPF0044; KEGG: sbc:SbBS512_E3590 putative RNA-binding protein; hypothetical protein 555974 12704093 EcDH1_0527 Escherichia coli DH1 hypothetical protein YP_006090504.1 555681 R 536056 CDS YP_006090505.1 386594105 12704094 556100..556729 1 NC_017625.1 TIGRFAM: ribosomal RNA large subunit methyltransferase J; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: sbc:SbBS512_E3591 ribosomal RNA large subunit methyltransferase J; ribosomal RNA large subunit methyltransferase J 556729 12704094 EcDH1_0528 Escherichia coli DH1 ribosomal RNA large subunit methyltransferase J YP_006090505.1 556100 D 536056 CDS YP_006090506.1 386594106 12704095 556820..558763 1 NC_017625.1 KEGG: sbc:SbBS512_E3592 ATP-dependent metallopeptidase HflB; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 558763 12704095 EcDH1_0529 Escherichia coli DH1 ATP-dependent metalloprotease FtsH YP_006090506.1 556820 D 536056 CDS YP_006090507.1 386594107 12704096 558853..559701 1 NC_017625.1 KEGG: ssn:SSON_3325 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 559701 12704096 EcDH1_0530 Escherichia coli DH1 dihydropteroate synthase YP_006090507.1 558853 D 536056 CDS YP_006090508.1 386594108 12704097 559694..561031 1 NC_017625.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sbc:SbBS512_E3594 phosphoglucosamine mutase; phosphoglucosamine mutase 561031 12704097 EcDH1_0531 Escherichia coli DH1 phosphoglucosamine mutase YP_006090508.1 559694 D 536056 CDS YP_006090509.1 386594109 12704098 561259..561591 1 NC_017625.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: sbc:SbBS512_E3595 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 561591 12704098 EcDH1_0532 Escherichia coli DH1 preprotein translocase subunit SecG YP_006090509.1 561259 D 536056 CDS YP_006090510.1 386594110 12704100 562133..563776 1 NC_017625.1 PFAM: sulfatase; KEGG: sbo:SBO_3209 putative alkaline phosphatase I; sulfatase 563776 12704100 EcDH1_0533 Escherichia coli DH1 sulfatase YP_006090510.1 562133 D 536056 CDS YP_006090511.1 386594111 12704101 complement(563784..565127) 1 NC_017625.1 PFAM: argininosuccinate synthase; KEGG: ssn:SSON_3320 argininosuccinate synthase; argininosuccinate synthase 565127 12704101 EcDH1_0534 Escherichia coli DH1 argininosuccinate synthase YP_006090511.1 563784 R 536056 CDS YP_006090512.1 386594112 12704103 565788..566210 1 NC_017625.1 PFAM: protein of unknown function DUF150; KEGG: sdy:SDY_3349 hypothetical protein; hypothetical protein 566210 12704103 EcDH1_0535 Escherichia coli DH1 hypothetical protein YP_006090512.1 565788 D 536056 CDS YP_006090513.1 386594113 12704104 566238..567725 1 NC_017625.1 TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; KEGG: ssn:SSON_3315 transcription elongation factor NusA; NusA antitermination factor 567725 12704104 EcDH1_0536 Escherichia coli DH1 NusA antitermination factor YP_006090513.1 566238 D 536056 CDS YP_006090514.1 386594114 12704105 567750..570422 1 NC_017625.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein; KEGG: sbc:SbBS512_E3603 translation initiation factor IF-2; translation initiation factor IF-2 570422 12704105 EcDH1_0537 Escherichia coli DH1 translation initiation factor IF-2 YP_006090514.1 567750 D 536056 CDS YP_006090515.1 386594115 12704106 570586..570987 1 NC_017625.1 PFAM: ribosome-binding factor A; KEGG: sdy:SDY_3346 ribosome-binding factor A; ribosome-binding factor A 570987 12704106 EcDH1_0538 Escherichia coli DH1 ribosome-binding factor A YP_006090515.1 570586 D 536056 CDS YP_006090516.1 386594116 12704107 570987..571931 1 NC_017625.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: ssn:SSON_3312 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 571931 12704107 EcDH1_0539 Escherichia coli DH1 tRNA pseudouridine synthase B YP_006090516.1 570987 D 536056 CDS YP_006090517.1 386594117 12704108 572080..572349 1 NC_017625.1 PFAM: ribosomal protein S15; KEGG: sdy:SDY_3344 30S ribosomal protein S15; 30S ribosomal protein S15 572349 12704108 EcDH1_0540 Escherichia coli DH1 30S ribosomal protein S15 YP_006090517.1 572080 D 536056 CDS YP_006090518.1 386594118 12704109 572596..574731 1 NC_017625.1 KEGG: ssn:SSON_3310 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; Polyribonucleotide nucleotidyltransferase 574731 12704109 EcDH1_0541 Escherichia coli DH1 Polyribonucleotide nucleotidyltransferase YP_006090518.1 572596 D 536056 CDS YP_006090519.1 386594119 12704110 574840..575724 1 NC_017625.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ssn:SSON_3309 lipoprotein NlpI; hypothetical protein 575724 12704110 EcDH1_0542 Escherichia coli DH1 hypothetical protein YP_006090519.1 574840 D 536056 CDS YP_006090520.1 386594120 12704111 575904..577793 1 NC_017625.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbc:SbBS512_E3609 cold-shock DEAD box protein A; DEAD/DEAH box helicase 577793 12704111 EcDH1_0543 Escherichia coli DH1 DEAD/DEAH box helicase YP_006090520.1 575904 D 536056 CDS YP_006090521.1 386594121 12704112 577947..579191 1 NC_017625.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: sfv:SFV_3191 tryptophan permease; aromatic amino acid transporter 579191 12704112 EcDH1_0544 Escherichia coli DH1 aromatic amino acid transporter YP_006090521.1 577947 D 536056 CDS YP_006090522.1 386594122 12704113 complement(579309..580316) 1 NC_017625.1 PFAM: Luciferase-like monooxygenase; KEGG: sbo:SBO_3222 hypothetical protein; luciferase-like monooxygenase 580316 12704113 EcDH1_0545 Escherichia coli DH1 luciferase-like monooxygenase YP_006090522.1 579309 R 536056 CDS YP_006090523.1 386594123 12704114 complement(580397..581275) 1 NC_017625.1 PFAM: peptidase U32; KEGG: sdy:SDY_3338 hypothetical protein; peptidase U32 581275 12704114 EcDH1_0546 Escherichia coli DH1 peptidase U32 YP_006090523.1 580397 R 536056 CDS YP_006090524.1 386594124 12704115 complement(581284..582279) 1 NC_017625.1 PFAM: peptidase U32; KEGG: ssn:SSON_3304 putative collagenase; peptidase U32 582279 12704115 EcDH1_0547 Escherichia coli DH1 peptidase U32 YP_006090524.1 581284 R 536056 CDS YP_006090525.1 386594125 12704116 582488..583012 1 NC_017625.1 PFAM: Sterol-binding domain protein; KEGG: sdy:SDY_3336 hypothetical protein; Sterol-binding domain-containing protein 583012 12704116 EcDH1_0548 Escherichia coli DH1 Sterol-binding domain-containing protein YP_006090525.1 582488 D 536056 CDS YP_006090526.1 386594126 12704117 583006..583509 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_3335 hypothetical protein; N-acetyltransferase GCN5 583509 12704117 EcDH1_0549 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006090526.1 583006 D 536056 CDS YP_006090527.1 386594127 12704118 complement(583496..583798) 1 NC_017625.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: sbc:SbBS512_E3616 GIY-YIG catalytic domain protein; Excinuclease ABC C subunit domain-containing protein 583798 12704118 EcDH1_0550 Escherichia coli DH1 Excinuclease ABC C subunit domain-containing protein YP_006090527.1 583496 R 536056 CDS YP_006090528.1 386594128 12704119 583849..584292 1 NC_017625.1 KEGG: sfv:SFV_3184 hypothetical protein; hypothetical protein 584292 12704119 EcDH1_0551 Escherichia coli DH1 hypothetical protein YP_006090528.1 583849 D 536056 CDS YP_006090529.1 386594129 12704120 complement(584272..584790) 1 NC_017625.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: sdy:SDY_3332 hypothetical protein; Pfpi family intracellular protease 584790 12704120 EcDH1_0552 Escherichia coli DH1 Pfpi family intracellular protease YP_006090529.1 584272 R 536056 CDS YP_006090530.1 386594130 12704121 584918..585553 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sbc:SbBS512_E3620 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 585553 12704121 EcDH1_0553 Escherichia coli DH1 NAD-dependent epimerase/dehydratase YP_006090530.1 584918 D 536056 CDS YP_006090531.1 386594131 12704122 585626..586666 1 NC_017625.1 PFAM: permease; KEGG: ssn:SSON_3297 hypothetical protein; permease 586666 12704122 EcDH1_0554 Escherichia coli DH1 permease YP_006090531.1 585626 D 536056 CDS YP_006090532.1 386594132 12704123 complement(586780..587355) 1 NC_017625.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: sdy:SDY_3329 hypothetical protein; transport-associated 587355 12704123 EcDH1_0555 Escherichia coli DH1 transport-associated YP_006090532.1 586780 R 536056 CDS YP_006090533.1 386594133 12704124 complement(587365..587955) 1 NC_017625.1 KEGG: sdy:SDY_3328 DnaA initiator-associating protein DiaA; DnaA initiator-associating protein DiaA 587955 12704124 EcDH1_0556 Escherichia coli DH1 DnaA initiator-associating protein DiaA YP_006090533.1 587365 R 536056 CDS YP_006090534.1 386594134 12704125 complement(587975..588370) 1 NC_017625.1 PFAM: protein of unknown function UPF0102; KEGG: ssn:SSON_3294 hypothetical protein; hypothetical protein 588370 12704125 EcDH1_0557 Escherichia coli DH1 hypothetical protein YP_006090534.1 587975 R 536056 CDS YP_006090535.1 386594135 12704126 complement(588328..590364) 1 NC_017625.1 PFAM: LppC family lipoprotein; KEGG: ssn:SSON_3293 putative glycosylase; LppC family lipoprotein 590364 12704126 EcDH1_0558 Escherichia coli DH1 LppC family lipoprotein YP_006090535.1 588328 R 536056 CDS YP_006090536.1 386594136 12704127 590429..591289 1 NC_017625.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sdy:SDY_3325 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 591289 12704127 EcDH1_0559 Escherichia coli DH1 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_006090536.1 590429 D 536056 CDS YP_006090537.1 386594137 12704128 complement(591332..592423) 1 NC_017625.1 KEGG: sfv:SFV_3175 putative fimbrial protein; putative fimbrial protein 592423 12704128 EcDH1_0560 Escherichia coli DH1 putative fimbrial protein YP_006090537.1 591332 R 536056 CDS YP_006090538.1 386594138 12704129 complement(592434..594950) 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: ssn:SSON_3289 putative outer membrane protein; fimbrial biogenesis outer membrane usher protein 594950 12704129 EcDH1_0561 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006090538.1 592434 R 536056 CDS YP_006090539.1 386594139 12704130 complement(594979..595674) 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sfv:SFV_3171 putative chaperone; Pili assembly chaperone, N-terminal 595674 12704130 EcDH1_0562 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006090539.1 594979 R 536056 CDS YP_006090540.1 386594140 12704131 complement(595754..596338) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: esa:ESA_02345 hypothetical protein; Fimbrial protein 596338 12704131 EcDH1_0563 Escherichia coli DH1 Fimbrial protein YP_006090540.1 595754 R 536056 CDS YP_006090541.1 386594141 12704132 complement(596739..597440) 1 NC_017625.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sfx:S3393 galactosamine-6-phosphate isomerase; glucosamine-6-phosphate deaminase 597440 12704132 EcDH1_0564 Escherichia coli DH1 glucosamine-6-phosphate deaminase YP_006090541.1 596739 R 536056 CDS YP_006090542.1 386594142 12704133 complement(597495..598286) 1 NC_017625.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: sfx:S3392 N-acetylgalactosamine-specific PTS system transporter subunit IID; PTS system mannose/fructose/sorbose family transporter subunit IID 598286 12704133 EcDH1_0565 Escherichia coli DH1 PTS system mannose/fructose/sorbose family transporter subunit IID YP_006090542.1 597495 R 536056 CDS YP_006090543.1 386594143 12704134 complement(598276..599079) 1 NC_017625.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: sfx:S3391 N-acetylgalactosamine-specific PTS system transporter subunit IIC; PTS system mannose/fructose/sorbose family transporter subunit IIC 599079 12704134 EcDH1_0566 Escherichia coli DH1 PTS system mannose/fructose/sorbose family transporter subunit IIC YP_006090543.1 598276 R 536056 CDS YP_006090544.1 386594144 12704135 complement(599118..599594) 1 NC_017625.1 KEGG: ent:Ent638_3579 N-acetylgalactosamine-specific PTS system transporter subunit IIB; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIB 599594 12704135 EcDH1_0567 Escherichia coli DH1 PTS system mannose/fructose/sorbose family transporter subunit IIB YP_006090544.1 599118 R 536056 CDS YP_006090545.1 386594145 12704136 complement(599761..600621) 1 NC_017625.1 KEGG: ent:Ent638_3578 tagatose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; class II aldolase, tagatose bisphosphate family; PFAM: ketose-bisphosphate aldolase class-II; tagatose bisphosphate family class II aldolase 600621 12704136 EcDH1_0568 Escherichia coli DH1 tagatose bisphosphate family class II aldolase YP_006090545.1 599761 R 536056 CDS YP_006090546.1 386594146 12704137 complement(600634..601788) 1 NC_017625.1 TIGRFAM: sugar isomerase, AgaS family; PFAM: sugar isomerase (SIS); KEGG: cko:CKO_04536 hypothetical protein; sugar isomerase 601788 12704137 EcDH1_0569 Escherichia coli DH1 sugar isomerase YP_006090546.1 600634 R 536056 CDS YP_006090547.1 386594147 12704139 complement(602662..603063) 1 NC_017625.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: cko:CKO_04532 hypothetical protein; PTS sorbose-specific transporter subunit IIC 603063 12704139 EcDH1_0571 Escherichia coli DH1 PTS sorbose-specific transporter subunit IIC YP_006090547.1 602662 R 536056 CDS YP_006090548.1 386594148 12704140 complement(603074..603547) 1 NC_017625.1 KEGG: sfx:S3383 N-acetylgalactosamine-specific PTS system transporter subunit IIB; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIB 603547 12704140 EcDH1_0572 Escherichia coli DH1 PTS system mannose/fructose/sorbose family transporter subunit IIB YP_006090548.1 603074 R 536056 CDS YP_006090549.1 386594149 12704141 complement(603570..604850) 1 NC_017625.1 KEGG: sfx:S3382 putative tagatose 6-phosphate kinase 2; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit 604850 12704141 EcDH1_0573 Escherichia coli DH1 D-tagatose-bisphosphate aldolase non-catalytic subunit YP_006090549.1 603570 R 536056 CDS YP_006090550.1 386594150 12704142 605099..605908 1 NC_017625.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sfx:S3381 DNA-binding transcriptional regulator AgaR; DeoR family transcriptional regulator 605908 12704142 EcDH1_0574 Escherichia coli DH1 DeoR family transcriptional regulator YP_006090550.1 605099 D 536056 CDS YP_006090551.1 386594151 12704143 complement(605963..606427) 1 NC_017625.1 KEGG: ssn:SSON_3287 hypothetical protein; hypothetical protein 606427 12704143 EcDH1_0575 Escherichia coli DH1 hypothetical protein YP_006090551.1 605963 R 536056 CDS YP_006090552.1 386594152 12704144 complement(606427..606762) 1 NC_017625.1 KEGG: plu:plu3943 putative regulator PrlF; putative regulator PrlF 606762 12704144 EcDH1_0576 Escherichia coli DH1 putative regulator PrlF YP_006090552.1 606427 R 536056 CDS YP_006090553.1 386594153 12704145 complement(606911..608482) 1 NC_017625.1 KEGG: sfx:S3380 putative hydrolase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 608482 12704145 EcDH1_0577 Escherichia coli DH1 galactarate dehydratase YP_006090553.1 606911 R 536056 CDS YP_006090554.1 386594154 12704146 608857..610191 1 NC_017625.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S3379 putative transport protein; d-galactonate transporter 610191 12704146 EcDH1_0578 Escherichia coli DH1 d-galactonate transporter YP_006090554.1 608857 D 536056 CDS YP_006090555.1 386594155 12704147 610207..610977 1 NC_017625.1 KEGG: sbo:SBO_2991 alpha-dehydro-beta-deoxy-D-glucarate aldolase; TIGRFAM: 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; 2-dehydro-3-deoxyglucarate aldolase 610977 12704147 EcDH1_0579 Escherichia coli DH1 2-dehydro-3-deoxyglucarate aldolase YP_006090555.1 610207 D 536056 CDS YP_006090556.1 386594156 12704148 611007..611897 1 NC_017625.1 KEGG: sbo:SBO_2990 tartronate semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 611897 12704148 EcDH1_0580 Escherichia coli DH1 2-hydroxy-3-oxopropionate reductase YP_006090556.1 611007 D 536056 CDS YP_006090557.1 386594157 12704149 611994..613139 1 NC_017625.1 PFAM: glycerate kinase; KEGG: sbo:SBO_2989 glycerate kinase I; glycerate kinase 613139 12704149 EcDH1_0581 Escherichia coli DH1 glycerate kinase YP_006090557.1 611994 D 536056 CDS YP_006090558.1 386594158 12704151 complement(614162..615349) 1 NC_017625.1 KEGG: sfv:SFV_3162 hypothetical protein; hypothetical protein 615349 12704151 EcDH1_0582 Escherichia coli DH1 hypothetical protein YP_006090558.1 614162 R 536056 CDS YP_006090559.1 386594159 12704152 complement(615371..615910) 1 NC_017625.1 KEGG: sfv:SFV_3161 hypothetical protein; hypothetical protein 615910 12704152 EcDH1_0583 Escherichia coli DH1 hypothetical protein YP_006090559.1 615371 R 536056 CDS YP_006090560.1 386594160 12704153 complement(616166..616510) 1 NC_017625.1 KEGG: sbo:SBO_2984 DNA-binding transcriptional activator TdcR; DNA-binding transcriptional activator TdcR 616510 12704153 EcDH1_0584 Escherichia coli DH1 DNA-binding transcriptional activator TdcR YP_006090560.1 616166 R 536056 CDS YP_006090561.1 386594161 12704154 616699..617637 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3310 DNA-binding transcriptional activator; LysR family transcriptional regulator 617637 12704154 EcDH1_0585 Escherichia coli DH1 LysR family transcriptional regulator YP_006090561.1 616699 D 536056 CDS YP_006090562.1 386594162 12704155 617736..618725 1 NC_017625.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sdy:SDY_3309 threonine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 618725 12704155 EcDH1_0586 Escherichia coli DH1 pyridoxal-5'-phosphate-dependent protein subunit beta YP_006090562.1 617736 D 536056 CDS YP_006090563.1 386594163 12704156 618747..620078 1 NC_017625.1 TIGRFAM: serine transporter; KEGG: ssn:SSON_3273 anaerobically inducible L-threonine, L-serine permease; serine transporter 620078 12704156 EcDH1_0587 Escherichia coli DH1 serine transporter YP_006090563.1 618747 D 536056 CDS YP_006090564.1 386594164 12704157 620104..621312 1 NC_017625.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: sbo:SBO_2980 propionate/acetate kinase; acetate kinase 621312 12704157 EcDH1_0588 Escherichia coli DH1 acetate kinase YP_006090564.1 620104 D 536056 CDS YP_006090565.1 386594165 12704158 621346..623640 1 NC_017625.1 KEGG: sbc:SbBS512_E3243 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; formate acetyltransferase 623640 12704158 EcDH1_0589 Escherichia coli DH1 formate acetyltransferase YP_006090565.1 621346 D 536056 CDS YP_006090566.1 386594166 12704159 623654..624043 1 NC_017625.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: sbc:SbBS512_E3244 putative endoribonuclease L-PSP; endoribonuclease L-PSP 624043 12704159 EcDH1_0590 Escherichia coli DH1 endoribonuclease L-PSP YP_006090566.1 623654 D 536056 CDS YP_006090567.1 386594167 12704160 624115..625479 1 NC_017625.1 KEGG: sbc:SbBS512_E3245 L-serine ammonia-lyase TdcG; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 625479 12704160 EcDH1_0591 Escherichia coli DH1 L-serine dehydratase 1 YP_006090567.1 624115 D 536056 CDS YP_006090568.1 386594168 12704161 625754..627085 1 NC_017625.1 TIGRFAM: serine transporter; KEGG: ssn:SSON_3268 putative transport system permease protein; serine transporter 627085 12704161 EcDH1_0592 Escherichia coli DH1 serine transporter YP_006090568.1 625754 D 536056 CDS YP_006090569.1 386594169 12704162 627113..628423 1 NC_017625.1 PFAM: protein of unknown function DUF1063; KEGG: sbo:SBO_2975 hypothetical protein; hypothetical protein 628423 12704162 EcDH1_0593 Escherichia coli DH1 hypothetical protein YP_006090569.1 627113 D 536056 CDS YP_006090570.1 386594170 12704163 complement(628557..628721) 1 NC_017625.1 KEGG: sdy:SDY_3299 hypothetical protein; hypothetical protein 628721 12704163 EcDH1_0594 Escherichia coli DH1 hypothetical protein YP_006090570.1 628557 R 536056 CDS YP_006090571.1 386594171 12704164 complement(628744..629445) 1 NC_017625.1 PFAM: Pirin domain protein; KEGG: sbc:SbBS512_E3251 pirin family protein; Pirin domain-containing protein 629445 12704164 EcDH1_0595 Escherichia coli DH1 Pirin domain-containing protein YP_006090571.1 628744 R 536056 CDS YP_006090572.1 386594172 12704165 629550..630446 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_2972 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 630446 12704165 EcDH1_0596 Escherichia coli DH1 LysR family transcriptional regulator YP_006090572.1 629550 D 536056 CDS YP_006090573.1 386594173 12704166 complement(630497..630853) 1 NC_017625.1 PFAM: protein of unknown function DUF805; KEGG: ssn:SSON_3263 putative cytochrome; hypothetical protein 630853 12704166 EcDH1_0597 Escherichia coli DH1 hypothetical protein YP_006090573.1 630497 R 536056 CDS YP_006090574.1 386594174 12704167 complement(631095..631460) 1 NC_017625.1 PFAM: protein of unknown function DUF805; KEGG: sbc:SbBS512_E3258 putative inner membrane protein YhaH; hypothetical protein 631460 12704167 EcDH1_0598 Escherichia coli DH1 hypothetical protein YP_006090574.1 631095 R 536056 CDS YP_006090575.1 386594175 12704168 complement(631754..632740) 1 NC_017625.1 KEGG: sbc:SbBS512_E3259 hypothetical protein; hypothetical protein 632740 12704168 EcDH1_0599 Escherichia coli DH1 hypothetical protein YP_006090575.1 631754 R 536056 CDS YP_006090576.1 386594176 12704169 complement(632810..633202) 1 NC_017625.1 PFAM: DoxX family protein; KEGG: sdy:SDY_3290 hypothetical protein; DoxX family protein 633202 12704169 EcDH1_0600 Escherichia coli DH1 DoxX family protein YP_006090576.1 632810 R 536056 CDS YP_006090577.1 386594177 12704170 complement(633388..633687) 1 NC_017625.1 KEGG: sbc:SbBS512_E3261 hypothetical protein; hypothetical protein 633687 12704170 EcDH1_0601 Escherichia coli DH1 hypothetical protein YP_006090577.1 633388 R 536056 CDS YP_006090578.1 386594178 12704171 complement(633677..634081) 1 NC_017625.1 KEGG: sbc:SbBS512_E3262 hypothetical protein; hypothetical protein 634081 12704171 EcDH1_0602 Escherichia coli DH1 hypothetical protein YP_006090578.1 633677 R 536056 CDS YP_006090579.1 386594179 12704172 complement(634084..634389) 1 NC_017625.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_3285 hypothetical protein; hypothetical protein 634389 12704172 EcDH1_0603 Escherichia coli DH1 hypothetical protein YP_006090579.1 634084 R 536056 CDS YP_006090580.1 386594180 12704173 complement(634427..634795) 1 NC_017625.1 PFAM: protein of unknown function DUF1090; KEGG: sbc:SbBS512_E3264 hypothetical protein; hypothetical protein 634795 12704173 EcDH1_0604 Escherichia coli DH1 hypothetical protein YP_006090580.1 634427 R 536056 CDS YP_006090581.1 386594181 12704174 complement(634942..635325) 1 NC_017625.1 KEGG: sbc:SbBS512_E3265 hypothetical protein; hypothetical protein 635325 12704174 EcDH1_0605 Escherichia coli DH1 hypothetical protein YP_006090581.1 634942 R 536056 CDS YP_006090582.1 386594182 12704175 complement(635329..635991) 1 NC_017625.1 PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_3282 hypothetical protein; hypothetical protein 635991 12704175 EcDH1_0606 Escherichia coli DH1 hypothetical protein YP_006090582.1 635329 R 536056 CDS YP_006090583.1 386594183 12704176 complement(636336..637112) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbo:SBO_2961 DNA-binding transcriptional repressor ExuR; regulatory protein GntR HTH 637112 12704176 EcDH1_0607 Escherichia coli DH1 regulatory protein GntR HTH YP_006090583.1 636336 R 536056 CDS YP_006090584.1 386594184 12704177 complement(637242..638540) 1 NC_017625.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_3134 transport protein of hexuronates; d-galactonate transporter 638540 12704177 EcDH1_0608 Escherichia coli DH1 d-galactonate transporter YP_006090584.1 637242 R 536056 CDS YP_006090585.1 386594185 12704178 639023..640435 1 NC_017625.1 PFAM: Glucuronate isomerase; KEGG: sbo:SBO_2953 glucuronate isomerase; glucuronate isomerase 640435 12704178 EcDH1_0609 Escherichia coli DH1 glucuronate isomerase YP_006090585.1 639023 D 536056 CDS YP_006090586.1 386594186 12704179 640450..641937 1 NC_017625.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: sbc:SbBS512_E3527 altronate dehydratase; altronate dehydratase 641937 12704179 EcDH1_0610 Escherichia coli DH1 altronate dehydratase YP_006090586.1 640450 D 536056 CDS YP_006090587.1 386594187 12704180 642020..642571 1 NC_017625.1 KEGG: ssn:SSON_3243 hypothetical protein; hypothetical protein 642571 12704180 EcDH1_0611 Escherichia coli DH1 hypothetical protein YP_006090587.1 642020 D 536056 CDS YP_006090588.1 386594188 12704181 complement(642576..643820) 1 NC_017625.1 PFAM: sodium:dicarboxylate symporter; KEGG: ssn:SSON_3242 putative transport protein; sodium:dicarboxylate symporter 643820 12704181 EcDH1_0612 Escherichia coli DH1 sodium:dicarboxylate symporter YP_006090588.1 642576 R 536056 CDS YP_006090589.1 386594189 12704182 complement(644219..645184) 1 NC_017625.1 PFAM: Integral membrane protein TerC; KEGG: ssn:SSON_3117 putative transport protein; integral membrane protein TerC 645184 12704182 EcDH1_0613 Escherichia coli DH1 integral membrane protein TerC YP_006090589.1 644219 R 536056 CDS YP_006090590.1 386594190 12704183 complement(645467..646453) 1 NC_017625.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sfv:SFV_3128 hypothetical protein; oxidoreductase domain-containing protein 646453 12704183 EcDH1_0614 Escherichia coli DH1 oxidoreductase domain-containing protein YP_006090590.1 645467 R 536056 CDS YP_006090591.1 386594191 12704184 complement(646532..647224) 1 NC_017625.1 PFAM: protein of unknown function DUF218; KEGG: sfv:SFV_3127 hypothetical protein; hypothetical protein 647224 12704184 EcDH1_0615 Escherichia coli DH1 hypothetical protein YP_006090591.1 646532 R 536056 CDS YP_006090592.1 386594192 12704185 complement(647301..647804) 1 NC_017625.1 PFAM: protein of unknown function DUF45; KEGG: sdy:SDY_3268 hypothetical protein; hypothetical protein 647804 12704185 EcDH1_0616 Escherichia coli DH1 hypothetical protein YP_006090592.1 647301 R 536056 CDS YP_006090593.1 386594193 12704186 647889..649025 1 NC_017625.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sdy:SDY_3267 putative enzyme; rRNA (guanine-N(2)-)-methyltransferase 649025 12704186 EcDH1_0617 Escherichia coli DH1 rRNA (guanine-N(2)-)-methyltransferase YP_006090593.1 647889 D 536056 CDS YP_006090594.1 386594194 12704187 649309..649623 1 NC_017625.1 KEGG: ssn:SSON_3122 hypothetical protein; hypothetical protein 649623 12704187 EcDH1_0618 Escherichia coli DH1 hypothetical protein YP_006090594.1 649309 D 536056 CDS YP_006090595.1 386594195 12704188 649620..650036 1 NC_017625.1 PFAM: helix-turn-helix domain protein; KEGG: sfv:SFV_3123 hypothetical protein; putative transcriptional regulator with HTH domain 650036 12704188 EcDH1_0619 Escherichia coli DH1 putative transcriptional regulator with HTH domain YP_006090595.1 649620 D 536056 CDS YP_006090596.1 386594196 12704189 complement(650081..652099) 1 NC_017625.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ssn:SSON_3124 putative NADPH dehydrogenase; NADH:flavin oxidoreductase 652099 12704189 EcDH1_0620 Escherichia coli DH1 NADH:flavin oxidoreductase YP_006090596.1 650081 R 536056 CDS YP_006090597.1 386594197 12704190 complement(652525..654876) 1 NC_017625.1 KEGG: sfl:SF3120 glycosyl hydrolase; glycosyl hydrolase 654876 12704190 EcDH1_0621 Escherichia coli DH1 glycosyl hydrolase YP_006090597.1 652525 R 536056 CDS YP_006090598.1 386594198 12704191 complement(654893..655963) 1 NC_017625.1 KEGG: sbc:SbBS512_E3514 hypothetical protein; hypothetical protein 655963 12704191 EcDH1_0622 Escherichia coli DH1 hypothetical protein YP_006090598.1 654893 R 536056 CDS YP_006090599.1 386594199 12704192 complement(656097..657530) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sbo:SBO_2937 putative oxidoreductase; amino acid permease 657530 12704192 EcDH1_0623 Escherichia coli DH1 amino acid permease YP_006090599.1 656097 R 536056 CDS YP_006090600.1 386594200 12704193 complement(657593..658042) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: ssn:SSON_3216 cryptic beta-D-galactosidase subunit beta; hypothetical protein 658042 12704193 EcDH1_0624 Escherichia coli DH1 hypothetical protein YP_006090600.1 657593 R 536056 CDS YP_006090601.1 386594201 12704194 complement(658039..661131) 1 NC_017625.1 PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sbo:SBO_2935 cryptic beta-D-galactosidase subunit alpha; glycoside hydrolase family protein 661131 12704194 EcDH1_0625 Escherichia coli DH1 glycoside hydrolase family protein YP_006090601.1 658039 R 536056 CDS YP_006090602.1 386594202 12704195 complement(661315..662298) 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sdy:SDY_3259 DNA-binding transcriptional repressor; LacI family transcriptional regulator 662298 12704195 EcDH1_0626 Escherichia coli DH1 LacI family transcriptional regulator YP_006090602.1 661315 R 536056 CDS YP_006090603.1 386594203 12704196 662517..662849 1 NC_017625.1 PFAM: t-RNA-binding domain protein; KEGG: sbo:SBO_2933 hypothetical protein; t-RNA-binding domain-containing protein 662849 12704196 EcDH1_0627 Escherichia coli DH1 t-RNA-binding domain-containing protein YP_006090603.1 662517 D 536056 CDS YP_006090604.1 386594204 12704197 complement(662891..664180) 1 NC_017625.1 KEGG: sfv:SFV_3114 putrescine--2-oxoglutarate aminotransferase; TIGRFAM: putrescine aminotransferase; PFAM: aminotransferase class-III; putrescine aminotransferase 664180 12704197 EcDH1_0628 Escherichia coli DH1 putrescine aminotransferase YP_006090604.1 662891 R 536056 CDS YP_006090605.1 386594205 12704198 664688..666208 1 NC_017625.1 KEGG: ssn:SSON_3210 aerotaxis sensor receptor, flavoprotein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 666208 12704198 EcDH1_0629 Escherichia coli DH1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_006090605.1 664688 D 536056 CDS YP_006090606.1 386594206 12704199 complement(666362..666985) 1 NC_017625.1 PFAM: transcriptional regulator PadR family protein; KEGG: sbo:SBO_2930 hypothetical protein; PadR-like family transcriptional regulator 666985 12704199 EcDH1_0630 Escherichia coli DH1 PadR-like family transcriptional regulator YP_006090606.1 666362 R 536056 CDS YP_006090607.1 386594207 12704200 667273..668037 1 NC_017625.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sbc:SbBS512_E3506 siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain-containing protein 668037 12704200 EcDH1_0631 Escherichia coli DH1 FAD-binding 9 siderophore-interacting domain-containing protein YP_006090607.1 667273 D 536056 CDS YP_006090608.1 386594208 12704202 668291..668797 1 NC_017625.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: sbc:SbBS512_E3504 G/U mismatch-specific DNA glycosylase; uracil-DNA glycosylase 668797 12704202 EcDH1_0632 Escherichia coli DH1 uracil-DNA glycosylase YP_006090608.1 668291 D 536056 CDS YP_006090609.1 386594209 12704203 complement(668876..670717) 1 NC_017625.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: sbo:SBO_2925 RNA polymerase sigma factor RpoD; RNA polymerase sigma-70 subunit RpoD 670717 12704203 EcDH1_0633 Escherichia coli DH1 RNA polymerase sigma-70 subunit RpoD YP_006090609.1 668876 R 536056 CDS YP_006090610.1 386594210 12704204 complement(670912..672657) 1 NC_017625.1 KEGG: ssn:SSON_3203 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 672657 12704204 EcDH1_0634 Escherichia coli DH1 DNA primase YP_006090610.1 670912 R 536056 CDS YP_006090611.1 386594211 12704205 complement(672768..672983) 1 NC_017625.1 PFAM: ribosomal protein S21; KEGG: kpe:KPK_0646 ribosomal protein S21; 30S ribosomal protein S21 672983 12704205 EcDH1_0635 Escherichia coli DH1 30S ribosomal protein S21 YP_006090611.1 672768 R 536056 CDS YP_006090612.1 386594212 12704206 673221..674234 1 NC_017625.1 KEGG: sdy:SDY_3248 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 674234 12704206 EcDH1_0636 Escherichia coli DH1 glycoprotease family metalloendopeptidase YP_006090612.1 673221 D 536056 CDS YP_006090613.1 386594213 12704207 complement(674277..675740) 1 NC_017625.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: sfv:SFV_3103 hypothetical protein; anion transporter 675740 12704207 EcDH1_0637 Escherichia coli DH1 anion transporter YP_006090613.1 674277 R 536056 CDS YP_006090614.1 386594214 12704209 complement(676389..677300) 1 NC_017625.1 KEGG: sbo:SBO_2919 tartrate dehydratase subunit alpha; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 677300 12704209 EcDH1_0639 Escherichia coli DH1 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha YP_006090614.1 676389 R 536056 CDS YP_006090615.1 386594215 12704210 677507..678439 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_04450 transcriptional activator TtdR; LysR family transcriptional regulator 678439 12704210 EcDH1_0640 Escherichia coli DH1 LysR family transcriptional regulator YP_006090615.1 677507 D 536056 CDS YP_006090616.1 386594216 12704211 complement(678452..679069) 1 NC_017625.1 PFAM: protein of unknown function DUF205; KEGG: sdy:SDY_3242 hypothetical protein; hypothetical protein 679069 12704211 EcDH1_0641 Escherichia coli DH1 hypothetical protein YP_006090616.1 678452 R 536056 CDS YP_006090617.1 386594217 12704212 679174..679542 1 NC_017625.1 TIGRFAM: dihydroneopterin aldolase; KEGG: sdy:SDY_3241 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; dihydroneopterin aldolase 679542 12704212 EcDH1_0642 Escherichia coli DH1 dihydroneopterin aldolase YP_006090617.1 679174 D 536056 CDS YP_006090618.1 386594218 12704213 679632..680453 1 NC_017625.1 KEGG: sbc:SbBS512_E3488 undecaprenyl-diphosphatase BacA; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 680453 12704213 EcDH1_0643 Escherichia coli DH1 undecaprenol kinase YP_006090618.1 679632 D 536056 CDS YP_006090619.1 386594219 12704214 complement(680634..681872) 1 NC_017625.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: sbc:SbBS512_E3487 multifunctional CCA protein; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 681872 12704214 EcDH1_0644 Escherichia coli DH1 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_006090619.1 680634 R 536056 CDS YP_006090620.1 386594220 12704215 complement(681936..682556) 1 NC_017625.1 SMART: SH3 domain protein; KEGG: ssn:SSON_3192 putative signal transduction protein; SH3 domain-containing protein 682556 12704215 EcDH1_0645 Escherichia coli DH1 SH3 domain-containing protein YP_006090620.1 681936 R 536056 CDS YP_006090621.1 386594221 12704216 682798..684099 1 NC_017625.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: sdy:SDY_3237 hypothetical protein; adenylate cyclase 684099 12704216 EcDH1_0646 Escherichia coli DH1 adenylate cyclase YP_006090621.1 682798 D 536056 CDS YP_006090622.1 386594222 12704217 684122..686962 1 NC_017625.1 PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; KEGG: sfv:SFV_3093 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 686962 12704217 EcDH1_0647 Escherichia coli DH1 (glutamate--ammonia-ligase) adenylyltransferase YP_006090622.1 684122 D 536056 CDS YP_006090623.1 386594223 12704218 687010..688443 1 NC_017625.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: sfv:SFV_3092 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; rfaE bifunctional protein 688443 12704218 EcDH1_0648 Escherichia coli DH1 rfaE bifunctional protein YP_006090623.1 687010 D 536056 CDS YP_006090624.1 386594224 12704219 complement(689238..690899) 1 NC_017625.1 PFAM: band 7 protein; KEGG: ssn:SSON_3188 hypothetical protein; hypothetical protein 690899 12704219 EcDH1_0649 Escherichia coli DH1 hypothetical protein YP_006090624.1 689238 R 536056 CDS YP_006090625.1 386594225 12704220 complement(690926..691555) 1 NC_017625.1 PFAM: protein of unknown function DUF1449; KEGG: ssn:SSON_3187 putative oxidoreductase; hypothetical protein 691555 12704220 EcDH1_0650 Escherichia coli DH1 hypothetical protein YP_006090625.1 690926 R 536056 CDS YP_006090626.1 386594226 12704221 691824..692024 1 NC_017625.1 PFAM: Glycogen synthesis protein; KEGG: ssn:SSON_3186 glycogen synthesis protein GlgS; Glycogen synthesis protein 692024 12704221 EcDH1_0651 Escherichia coli DH1 Glycogen synthesis protein YP_006090626.1 691824 D 536056 CDS YP_006090627.1 386594227 12704222 complement(692067..693131) 1 NC_017625.1 KEGG: ssn:SSON_3184 hypothetical protein; hypothetical protein 693131 12704222 EcDH1_0652 Escherichia coli DH1 hypothetical protein YP_006090627.1 692067 R 536056 CDS YP_006090628.1 386594228 12704223 complement(693133..693882) 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: ssn:SSON_3183 hypothetical protein; Pili assembly chaperone, N-terminal 693882 12704223 EcDH1_0653 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006090628.1 693133 R 536056 CDS YP_006090629.1 386594229 12704224 complement(693898..696363) 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: yps:YPTB3895 outer membrane fimbrial usher porin; fimbrial biogenesis outer membrane usher protein 696363 12704224 EcDH1_0654 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006090629.1 693898 R 536056 CDS YP_006090630.1 386594230 12704225 complement(696348..697253) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 697253 12704225 EcDH1_0655 Escherichia coli DH1 integrase catalytic subunit YP_006090630.1 696348 R 536056 CDS YP_006090631.1 386594231 12704226 complement(697211..697576) 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 697576 12704226 EcDH1_0656 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006090631.1 697211 R 536056 CDS YP_006090632.1 386594232 12704227 complement(697798..698349) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: ssn:SSON_3180 predicted fimbrial-like adhesin protein; Fimbrial protein 698349 12704227 EcDH1_0657 Escherichia coli DH1 Fimbrial protein YP_006090632.1 697798 R 536056 CDS YP_006090633.1 386594233 12704228 complement(698633..698923) 1 NC_017625.1 PFAM: protein of unknown function DUF526; KEGG: sfv:SFV_3086 hypothetical protein; hypothetical protein 698923 12704228 EcDH1_0658 Escherichia coli DH1 hypothetical protein YP_006090633.1 698633 R 536056 CDS YP_006090634.1 386594234 12704229 699297..699950 1 NC_017625.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: sdy:SDY_3226 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 699950 12704229 EcDH1_0659 Escherichia coli DH1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_006090634.1 699297 D 536056 CDS YP_006090635.1 386594235 12704230 700212..700382 1 NC_017625.1 KEGG: sbc:SbBS512_E3475 hypothetical protein; hypothetical protein 700382 12704230 EcDH1_0660 Escherichia coli DH1 hypothetical protein YP_006090635.1 700212 D 536056 CDS YP_006090636.1 386594236 12704231 complement(700440..701213) 1 NC_017625.1 PFAM: zinc/iron permease; KEGG: ssn:SSON_3177 zinc transporter ZupT; zinc/iron permease 701213 12704231 EcDH1_0661 Escherichia coli DH1 zinc/iron permease YP_006090636.1 700440 R 536056 CDS YP_006090637.1 386594237 12704232 701329..702144 1 NC_017625.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: sfv:SFV_3083 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B 702144 12704232 EcDH1_0662 Escherichia coli DH1 extradiol ring-cleavage dioxygenase class III protein subunit B YP_006090637.1 701329 D 536056 CDS YP_006090638.1 386594238 12704233 complement(702182..703342) 1 NC_017625.1 PFAM: glutathionylspermidine synthase; KEGG: sbc:SbBS512_E3470 glutathionylspermidine synthase family protein; glutathionylspermidine synthase 703342 12704233 EcDH1_0663 Escherichia coli DH1 glutathionylspermidine synthase YP_006090638.1 702182 R 536056 CDS YP_006090639.1 386594239 12704234 complement(703348..704019) 1 NC_017625.1 PFAM: protein of unknown function DUF1190; KEGG: ssn:SSON_3174 hypothetical protein; hypothetical protein 704019 12704234 EcDH1_0664 Escherichia coli DH1 hypothetical protein YP_006090639.1 703348 R 536056 CDS YP_006090640.1 386594240 12704235 complement(704167..705648) 1 NC_017625.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ssn:SSON_3173 outer membrane channel protein; TolC family type I secretion outer membrane protein 705648 12704235 EcDH1_0665 Escherichia coli DH1 TolC family type I secretion outer membrane protein YP_006090640.1 704167 R 536056 CDS YP_006090641.1 386594241 12704236 705853..706482 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_3206 ADP-ribose pyrophosphatase NudF; ADP-ribose diphosphatase 706482 12704236 EcDH1_0666 Escherichia coli DH1 ADP-ribose diphosphatase YP_006090641.1 705853 D 536056 CDS YP_006090642.1 386594242 12704237 706483..706905 1 NC_017625.1 PFAM: protein of unknown function DUF1249; KEGG: sbc:SbBS512_E3466 hypothetical protein; hypothetical protein 706905 12704237 EcDH1_0667 Escherichia coli DH1 hypothetical protein YP_006090642.1 706483 D 536056 CDS YP_006090643.1 386594243 12704238 706930..707757 1 NC_017625.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: sdy:SDY_3208 cyclic 3',5'-adenosine monophosphate phosphodiesterase; calcineurin phosphoesterase 707757 12704238 EcDH1_0668 Escherichia coli DH1 calcineurin phosphoesterase YP_006090643.1 706930 D 536056 CDS YP_006090644.1 386594244 12704239 707757..708338 1 NC_017625.1 PFAM: protein of unknown function UPF0227; KEGG: sdy:SDY_3209 esterase YqiA; hypothetical protein 708338 12704239 EcDH1_0669 Escherichia coli DH1 hypothetical protein YP_006090644.1 707757 D 536056 CDS YP_006090645.1 386594245 12704240 708367..710259 1 NC_017625.1 KEGG: sbo:SBO_2888 DNA topoisomerase IV subunit B; TIGRFAM: DNA topoisomerase IV, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA topoisomerase IV subunit B 710259 12704240 EcDH1_0670 Escherichia coli DH1 DNA topoisomerase IV subunit B YP_006090645.1 708367 D 536056 CDS YP_006090646.1 386594246 12704241 complement(710307..710621) 1 NC_017625.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sbc:SbBS512_E3462 quinol monooxygenase YgiN; antibiotic biosynthesis monooxygenase 710621 12704241 EcDH1_0671 Escherichia coli DH1 antibiotic biosynthesis monooxygenase YP_006090646.1 710307 R 536056 CDS YP_006090647.1 386594247 12704242 complement(710652..711233) 1 NC_017625.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sbc:SbBS512_E3461 modulator of drug activity B; NAD(P)H dehydrogenase (quinone) 711233 12704242 EcDH1_0672 Escherichia coli DH1 NAD(P)H dehydrogenase (quinone) YP_006090647.1 710652 R 536056 CDS YP_006090648.1 386594248 12704243 711552..711884 1 NC_017625.1 KEGG: sfx:S3272 hypothetical protein; hypothetical protein 711884 12704243 EcDH1_0673 Escherichia coli DH1 hypothetical protein YP_006090648.1 711552 D 536056 CDS YP_006090649.1 386594249 12704244 complement(711930..713279) 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ssn:SSON_3165 sensor protein QseC; histidine kinase 713279 12704244 EcDH1_0674 Escherichia coli DH1 histidine kinase YP_006090649.1 711930 R 536056 CDS YP_006090650.1 386594250 12704245 complement(713276..713935) 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_3164 DNA-binding response regulator in two-component regulatory system with QseC; winged helix family two component transcriptional regulator 713935 12704245 EcDH1_0675 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006090650.1 713276 R 536056 CDS YP_006090651.1 386594251 12704246 714087..714479 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sdy:SDY_3215 hypothetical protein; hypothetical protein 714479 12704246 EcDH1_0676 Escherichia coli DH1 hypothetical protein YP_006090651.1 714087 D 536056 CDS YP_006090652.1 386594252 12704247 714532..715014 1 NC_017625.1 PFAM: transcription activator effector binding; KEGG: ssn:SSON_3162 hypothetical protein; transcription activator effector binding protein 715014 12704247 EcDH1_0677 Escherichia coli DH1 transcription activator effector binding protein YP_006090652.1 714532 D 536056 CDS YP_006090653.1 386594253 12704248 715219..715515 1 NC_017625.1 KEGG: yps:YPTB3124 hypothetical protein; hypothetical protein 715515 12704248 EcDH1_0678 Escherichia coli DH1 hypothetical protein YP_006090653.1 715219 D 536056 CDS YP_006090654.1 386594254 12704249 715517..715912 1 NC_017625.1 SMART: helix-turn-helix domain protein; KEGG: ypb:YPTS_3247 XRE family transcriptional regulator; XRE family transcriptional regulator 715912 12704249 EcDH1_0679 Escherichia coli DH1 XRE family transcriptional regulator YP_006090654.1 715517 D 536056 CDS YP_006090655.1 386594255 12704250 716045..717652 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: sdy:SDY_3217 putative binding protein; family 5 extracellular solute-binding protein 717652 12704250 EcDH1_0680 Escherichia coli DH1 family 5 extracellular solute-binding protein YP_006090655.1 716045 D 536056 CDS YP_006090656.1 386594256 12704251 717790..720048 1 NC_017625.1 KEGG: sfv:SFV_3068 DNA topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA topoisomerase IV subunit A 720048 12704251 EcDH1_0681 Escherichia coli DH1 DNA topoisomerase IV subunit A YP_006090656.1 717790 D 536056 CDS YP_006090657.1 386594257 12704252 720282..721019 1 NC_017625.1 KEGG: sbc:SbBS512_E3455 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 721019 12704252 EcDH1_0682 Escherichia coli DH1 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_006090657.1 720282 D 536056 CDS YP_006090658.1 386594258 12704254 722617..724836 1 NC_017625.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sbc:SbBS512_E3451 radical SAM domain protein; radical SAM protein 724836 12704254 EcDH1_0684 Escherichia coli DH1 radical SAM protein YP_006090658.1 722617 D 536056 CDS YP_006090659.1 386594259 12704255 complement(724879..725136) 1 NC_017625.1 KEGG: sbc:SbBS512_E3443 putative lipoprotein; putative lipoprotein 725136 12704255 EcDH1_0685 Escherichia coli DH1 putative lipoprotein YP_006090659.1 724879 R 536056 CDS YP_006090660.1 386594260 12704256 complement(725187..726113) 1 NC_017625.1 KEGG: sbc:SbBS512_E3442 hypothetical protein; hypothetical protein 726113 12704256 EcDH1_0686 Escherichia coli DH1 hypothetical protein YP_006090660.1 725187 R 536056 CDS YP_006090661.1 386594261 12704257 complement(726313..727140) 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: sfx:S3260 2,5-diketo-D-gluconate reductase A; 2,5-didehydrogluconate reductase 727140 12704257 EcDH1_0687 Escherichia coli DH1 2,5-didehydrogluconate reductase YP_006090661.1 726313 R 536056 CDS YP_006090662.1 386594262 12704258 complement(727245..728408) 1 NC_017625.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sbc:SbBS512_E3439 alcohol dehydrogenase YqhD; iron-containing alcohol dehydrogenase 728408 12704258 EcDH1_0688 Escherichia coli DH1 iron-containing alcohol dehydrogenase YP_006090662.1 727245 R 536056 CDS YP_006090663.1 386594263 12704259 728545..729501 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: sbc:SbBS512_E3437 transcriptional regulator, AraC family; AraC family transcriptional regulator 729501 12704259 EcDH1_0689 Escherichia coli DH1 AraC family transcriptional regulator YP_006090663.1 728545 D 536056 CDS YP_006090664.1 386594264 12704260 complement(729541..730200) 1 NC_017625.1 PFAM: SNARE associated Golgi protein; KEGG: ssn:SSON_3152 hypothetical protein; hypothetical protein 730200 12704260 EcDH1_0690 Escherichia coli DH1 hypothetical protein YP_006090664.1 729541 R 536056 CDS YP_006090665.1 386594265 12704261 complement(730340..731527) 1 NC_017625.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ssn:SSON_3151 cystathionine beta-lyase; cystathionine beta-lyase 731527 12704261 EcDH1_0691 Escherichia coli DH1 cystathionine beta-lyase YP_006090665.1 730340 R 536056 CDS YP_006090666.1 386594266 12704262 731779..732513 1 NC_017625.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdy:SDY_3067 biopolymer transport protein ExbB; tonB-system energizer ExbB 732513 12704262 EcDH1_0692 Escherichia coli DH1 tonB-system energizer ExbB YP_006090666.1 731779 D 536056 CDS YP_006090667.1 386594267 12704263 732520..732945 1 NC_017625.1 TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbc:SbBS512_E3433 TonB system transport protein ExbD; TonB system transport protein ExbD 732945 12704263 EcDH1_0693 Escherichia coli DH1 TonB system transport protein ExbD YP_006090667.1 732520 D 536056 CDS YP_006090668.1 386594268 12704264 complement(733217..734101) 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbc:SbBS512_E3432 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 734101 12704264 EcDH1_0694 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006090668.1 733217 R 536056 CDS YP_006090669.1 386594269 12704265 734292..734786 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E3431 hypothetical protein; hypothetical protein 734786 12704265 EcDH1_0695 Escherichia coli DH1 hypothetical protein YP_006090669.1 734292 D 536056 CDS YP_006090670.1 386594270 12704266 complement(734826..735866) 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: sfv:SFV_3053 aldo-keto reductase; aldo/keto reductase 735866 12704266 EcDH1_0696 Escherichia coli DH1 aldo/keto reductase YP_006090670.1 734826 R 536056 CDS YP_006090671.1 386594271 12704268 737026..737313 1 NC_017625.1 KEGG: sdy:SDY_3075 hypothetical protein; hypothetical protein 737313 12704268 EcDH1_0698 Escherichia coli DH1 hypothetical protein YP_006090671.1 737026 D 536056 CDS YP_006090672.1 386594272 12704269 737502..738620 1 NC_017625.1 KEGG: sbc:SbBS512_E3424 hydrogenase-2 small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 738620 12704269 EcDH1_0699 Escherichia coli DH1 hydrogenase (NiFe) small subunit HydA YP_006090672.1 737502 D 536056 CDS YP_006090673.1 386594273 12704270 738623..739609 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_2867 hydrogenase 2 protein HybA; 4Fe-4S ferredoxin 739609 12704270 EcDH1_0700 Escherichia coli DH1 4Fe-4S ferredoxin YP_006090673.1 738623 D 536056 CDS YP_006090674.1 386594274 12704271 739599..740777 1 NC_017625.1 PFAM: Polysulphide reductase NrfD; KEGG: sdy:SDY_3078 predicted hydrogenase 2 cytochrome b type component; polysulfide reductase NrfD 740777 12704271 EcDH1_0701 Escherichia coli DH1 polysulfide reductase NrfD YP_006090674.1 739599 D 536056 CDS YP_006090675.1 386594275 12704272 740774..742477 1 NC_017625.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: sbc:SbBS512_E3421 hydrogenase-2, large subunit; nickel-dependent hydrogenase large subunit 742477 12704272 EcDH1_0702 Escherichia coli DH1 nickel-dependent hydrogenase large subunit YP_006090675.1 740774 D 536056 CDS YP_006090676.1 386594276 12704273 742477..742971 1 NC_017625.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sbc:SbBS512_E3420 hydrogenase expression/formation protein; hydrogenase expression/formation protein 742971 12704273 EcDH1_0703 Escherichia coli DH1 hydrogenase expression/formation protein YP_006090676.1 742477 D 536056 CDS YP_006090677.1 386594277 12704274 742964..743452 1 NC_017625.1 KEGG: sbc:SbBS512_E3419 hydrogenase-2 operon protein HybE; hydrogenase-2 operon protein HybE 743452 12704274 EcDH1_0704 Escherichia coli DH1 hydrogenase-2 operon protein HybE YP_006090677.1 742964 D 536056 CDS YP_006090678.1 386594278 12704275 743445..743786 1 NC_017625.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: sbc:SbBS512_E3418 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 743786 12704275 EcDH1_0705 Escherichia coli DH1 hydrogenase nickel incorporation protein HypA YP_006090678.1 743445 D 536056 CDS YP_006090679.1 386594279 12704276 743799..744047 1 NC_017625.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: sdy:SDY_3083 hydrogenase 2 accessory protein HypG; hydrogenase assembly chaperone HypC/HupF 744047 12704276 EcDH1_0706 Escherichia coli DH1 hydrogenase assembly chaperone HypC/HupF YP_006090679.1 743799 D 536056 CDS YP_006090680.1 386594280 12704277 complement(744170..745036) 1 NC_017625.1 PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E3416 glutathione S-transferase; glutathione S-transferase 745036 12704277 EcDH1_0707 Escherichia coli DH1 glutathione S-transferase YP_006090680.1 744170 R 536056 CDS YP_006090681.1 386594281 12704278 745241..747100 1 NC_017625.1 PFAM: glutathionylspermidine synthase; CHAP domain containing protein; KEGG: sdy:SDY_3085 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; glutathionylspermidine synthase 747100 12704278 EcDH1_0708 Escherichia coli DH1 glutathionylspermidine synthase YP_006090681.1 745241 D 536056 CDS YP_006090682.1 386594282 12704279 747392..748891 1 NC_017625.1 PFAM: phosphate transporter; KEGG: ssn:SSON_3132 low-affinity phosphate transport; phosphate transporter 748891 12704279 EcDH1_0709 Escherichia coli DH1 phosphate transporter YP_006090682.1 747392 D 536056 CDS YP_006090683.1 386594283 12704280 complement(748940..749632) 1 NC_017625.1 KEGG: sfx:S3234 hypothetical protein; hypothetical protein 749632 12704280 EcDH1_0710 Escherichia coli DH1 hypothetical protein YP_006090683.1 748940 R 536056 CDS YP_006090684.1 386594284 12704281 749821..750519 1 NC_017625.1 KEGG: ssn:SSON_3219 hypothetical protein; hypothetical protein 750519 12704281 EcDH1_0711 Escherichia coli DH1 hypothetical protein YP_006090684.1 749821 D 536056 CDS YP_006090685.1 386594285 12704282 750551..751309 1 NC_017625.1 KEGG: ssn:SSON_3220 hypothetical protein; hypothetical protein 751309 12704282 EcDH1_0712 Escherichia coli DH1 hypothetical protein YP_006090685.1 750551 D 536056 CDS YP_006090686.1 386594286 12704283 751355..752422 1 NC_017625.1 PFAM: polysaccharide biosynthesis protein; KEGG: ssn:SSON_3221 hypothetical protein; polysaccharide biosynthesis protein 752422 12704283 EcDH1_0713 Escherichia coli DH1 polysaccharide biosynthesis protein YP_006090686.1 751355 D 536056 CDS YP_006090687.1 386594287 12704284 complement(752569..753549) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 753549 12704284 EcDH1_0714 Escherichia coli DH1 transposase IS4 family protein YP_006090687.1 752569 R 536056 CDS YP_006090688.1 386594288 12704285 753584..754720 1 NC_017625.1 KEGG: sfv:SFV_3037 hypothetical protein; hypothetical protein 754720 12704285 EcDH1_0715 Escherichia coli DH1 hypothetical protein YP_006090688.1 753584 D 536056 CDS YP_006090689.1 386594289 12704286 complement(754727..755491) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sfx:S3220 DNA-binding transcriptional regulator GlcC; GntR family transcriptional regulator 755491 12704286 EcDH1_0716 Escherichia coli DH1 GntR family transcriptional regulator YP_006090689.1 754727 R 536056 CDS YP_006090690.1 386594290 12704287 755742..757241 1 NC_017625.1 TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: ppw:PputW619_2306 glycolate oxidase, subunit GlcD; glycolate oxidase subunit GlcD 757241 12704287 EcDH1_0717 Escherichia coli DH1 glycolate oxidase subunit GlcD YP_006090690.1 755742 D 536056 CDS YP_006090691.1 386594291 12704288 757241..758293 1 NC_017625.1 PFAM: FAD linked oxidase domain protein; KEGG: psa:PST_0432 glycolate oxidase FAD binding subunit; FAD linked oxidase domain-containing protein 758293 12704288 EcDH1_0718 Escherichia coli DH1 FAD linked oxidase domain-containing protein YP_006090691.1 757241 D 536056 CDS YP_006090692.1 386594292 12704289 758304..759527 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ppw:PputW619_2304 hypothetical protein; hypothetical protein 759527 12704289 EcDH1_0719 Escherichia coli DH1 hypothetical protein YP_006090692.1 758304 D 536056 CDS YP_006090693.1 386594293 12704290 759532..759936 1 NC_017625.1 PFAM: protein of unknown function DUF336; KEGG: sfv:SFV_3032 hypothetical protein; hypothetical protein 759936 12704290 EcDH1_0720 Escherichia coli DH1 hypothetical protein YP_006090693.1 759532 D 536056 CDS YP_006090694.1 386594294 12704291 759958..762129 1 NC_017625.1 KEGG: sfv:SFV_3031 malate synthase G; TIGRFAM: malate synthase G; PFAM: malate synthase; malate synthase G 762129 12704291 EcDH1_0721 Escherichia coli DH1 malate synthase G YP_006090694.1 759958 D 536056 CDS YP_006090695.1 386594295 12704292 762484..764166 1 NC_017625.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: sfv:SFV_3030 putative permease; L-lactate transport 764166 12704292 EcDH1_0722 Escherichia coli DH1 L-lactate transport YP_006090695.1 762484 D 536056 CDS YP_006090696.1 386594296 12704293 764651..769213 1 NC_017625.1 KEGG: vvu:VV1_0767 hypothetical protein; hypothetical protein 769213 12704293 EcDH1_0723 Escherichia coli DH1 hypothetical protein YP_006090696.1 764651 D 536056 CDS YP_006090697.1 386594297 12704294 769411..770220 1 NC_017625.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ppr:PBPRA3203 putative leader peptidase PilD; acid phosphatase 770220 12704294 EcDH1_0724 Escherichia coli DH1 acid phosphatase YP_006090697.1 769411 D 536056 CDS YP_006090698.1 386594298 12704295 770286..770696 1 NC_017625.1 KEGG: vco:VC0395_A1307 hypothetical protein; hypothetical protein 770696 12704295 EcDH1_0725 Escherichia coli DH1 hypothetical protein YP_006090698.1 770286 D 536056 CDS YP_006090699.1 386594299 12704296 770855..771709 1 NC_017625.1 TIGRFAM: general secretion pathway protein C; KEGG: sdy:SDY_3092 putative type II secretion protein GspC; general secretion pathway protein C 771709 12704296 EcDH1_0726 Escherichia coli DH1 general secretion pathway protein C YP_006090699.1 770855 D 536056 CDS YP_006090700.1 386594300 12704297 771793..772635 1 NC_017625.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: sbc:SbBS512_E3404 general secretion pathway protein GspL; general secretion pathway protein L 772635 12704297 EcDH1_0727 Escherichia coli DH1 general secretion pathway protein L YP_006090700.1 771793 D 536056 CDS YP_006090701.1 386594301 12704298 772637..773173 1 NC_017625.1 PFAM: General secretion pathway M protein; KEGG: sbc:SbBS512_E3403 general secretion pathway protein M; general secretion pathway protein M 773173 12704298 EcDH1_0728 Escherichia coli DH1 general secretion pathway protein M YP_006090701.1 772637 D 536056 CDS YP_006090702.1 386594302 12704300 complement(773503..774210) 1 NC_017625.1 PFAM: protein of unknown function DUF554; KEGG: ssn:SSON_3229 putative transport protein; hypothetical protein 774210 12704300 EcDH1_0729 Escherichia coli DH1 hypothetical protein YP_006090702.1 773503 R 536056 CDS YP_006090703.1 386594303 12704301 774608..776743 1 NC_017625.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sfx:S3165 ornithine decarboxylase; Ornithine decarboxylase 776743 12704301 EcDH1_0730 Escherichia coli DH1 Ornithine decarboxylase YP_006090703.1 774608 D 536056 CDS YP_006090704.1 386594304 12704302 complement(776793..778049) 1 NC_017625.1 TIGRFAM: nucleoside transporter; PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3397 nucleoside permease NupG; nucleoside transporter 778049 12704302 EcDH1_0731 Escherichia coli DH1 nucleoside transporter YP_006090704.1 776793 R 536056 CDS YP_006090705.1 386594305 12704303 complement(778251..779333) 1 NC_017625.1 PFAM: Lytic transglycosylase catalytic; KEGG: sdy:SDY_3109 murein transglycosylase C; lytic transglycosylase 779333 12704303 EcDH1_0732 Escherichia coli DH1 lytic transglycosylase YP_006090705.1 778251 R 536056 CDS YP_006090706.1 386594306 12704304 complement(779395..779670) 1 NC_017625.1 PFAM: Fe(II) trafficking protein YggX; KEGG: sdy:SDY_3110 hypothetical protein; protein-tyrosine-phosphatase 779670 12704304 EcDH1_0733 Escherichia coli DH1 protein-tyrosine-phosphatase YP_006090706.1 779395 R 536056 CDS YP_006090707.1 386594307 12704305 complement(779698..780750) 1 NC_017625.1 KEGG: sbo:SBO_3029 adenine DNA glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; A/G-specific adenine glycosylase MutY; SMART: iron-sulfur cluster loop; A/G-specific adenine glycosylase 780750 12704305 EcDH1_0734 Escherichia coli DH1 A/G-specific adenine glycosylase YP_006090707.1 779698 R 536056 CDS YP_006090708.1 386594308 12704306 780911..781630 1 NC_017625.1 KEGG: sbc:SbBS512_E3393 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 781630 12704306 EcDH1_0735 Escherichia coli DH1 tRNA (guanine-N(7)-)-methyltransferase YP_006090708.1 780911 D 536056 CDS YP_006090709.1 386594309 12704307 781630..781956 1 NC_017625.1 PFAM: protein of unknown function DUF469; KEGG: sdy:SDY_3113 hypothetical protein; hypothetical protein 781956 12704307 EcDH1_0736 Escherichia coli DH1 hypothetical protein YP_006090709.1 781630 D 536056 CDS YP_006090710.1 386594310 12704308 782140..782859 1 NC_017625.1 KEGG: sdy:SDY_3114 hypothetical protein; hypothetical protein 782859 12704308 EcDH1_0737 Escherichia coli DH1 hypothetical protein YP_006090710.1 782140 D 536056 CDS YP_006090711.1 386594311 12704309 783035..784081 1 NC_017625.1 TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; KEGG: sbc:SbBS512_E3389 L-asparaginase 2; type II L-asparaginase 784081 12704309 EcDH1_0738 Escherichia coli DH1 type II L-asparaginase YP_006090711.1 783035 D 536056 CDS YP_006090712.1 386594312 12704310 784198..785205 1 NC_017625.1 PFAM: protein of unknown function DUF1202; KEGG: sbc:SbBS512_E3388 hypothetical protein; hypothetical protein 785205 12704310 EcDH1_0739 Escherichia coli DH1 hypothetical protein YP_006090712.1 784198 D 536056 CDS YP_006090713.1 386594313 12704311 complement(785360..786496) 1 NC_017625.1 KEGG: ssn:SSON_3109 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 786496 12704311 EcDH1_0740 Escherichia coli DH1 oxygen-independent coproporphyrinogen III oxidase YP_006090713.1 785360 R 536056 CDS YP_006090714.1 386594314 12704312 complement(786489..787082) 1 NC_017625.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sbc:SbBS512_E3386 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 787082 12704312 EcDH1_0741 Escherichia coli DH1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_006090714.1 786489 R 536056 CDS YP_006090715.1 386594315 12704313 complement(787090..787380) 1 NC_017625.1 PFAM: protein of unknown function DUF167; KEGG: sbc:SbBS512_E3385 hypothetical protein; hypothetical protein 787380 12704313 EcDH1_0742 Escherichia coli DH1 hypothetical protein YP_006090715.1 787090 R 536056 CDS YP_006090716.1 386594316 12704314 complement(787377..787943) 1 NC_017625.1 PFAM: protein of unknown function YGGT; KEGG: sdy:SDY_3120 putative resistance protein; hypothetical protein 787943 12704314 EcDH1_0743 Escherichia coli DH1 hypothetical protein YP_006090716.1 787377 R 536056 CDS YP_006090717.1 386594317 12704315 complement(787961..788665) 1 NC_017625.1 PFAM: alanine racemase domain protein; KEGG: sdy:SDY_3122 hypothetical protein; alanine racemase 788665 12704315 EcDH1_0744 Escherichia coli DH1 alanine racemase YP_006090717.1 787961 R 536056 CDS YP_006090718.1 386594318 12704316 788683..789663 1 NC_017625.1 KEGG: sfv:SFV_3004 putative transport protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 789663 12704316 EcDH1_0745 Escherichia coli DH1 twitching motility protein YP_006090718.1 788683 D 536056 CDS YP_006090719.1 386594319 12704317 complement(789847..790263) 1 NC_017625.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: sbc:SbBS512_E3381 putative Holliday junction resolvase; Holliday junction resolvase YqgF 790263 12704317 EcDH1_0746 Escherichia coli DH1 Holliday junction resolvase YqgF YP_006090719.1 789847 R 536056 CDS YP_006090720.1 386594320 12704318 complement(790263..790898) 1 NC_017625.1 PFAM: protein of unknown function DUF179; KEGG: sfv:SFV_3002 hypothetical protein; hypothetical protein 790898 12704318 EcDH1_0747 Escherichia coli DH1 hypothetical protein YP_006090720.1 790263 R 536056 CDS YP_006090721.1 386594321 12704319 complement(790935..791885) 1 NC_017625.1 KEGG: sbc:SbBS512_E3379 glutathione synthase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase 791885 12704319 EcDH1_0748 Escherichia coli DH1 glutathione synthetase YP_006090721.1 790935 R 536056 CDS YP_006090722.1 386594322 12704320 complement(791898..792629) 1 NC_017625.1 PFAM: protein of unknown function DUF558; KEGG: sfv:SFV_3000 hypothetical protein; hypothetical protein 792629 12704320 EcDH1_0749 Escherichia coli DH1 hypothetical protein YP_006090722.1 791898 R 536056 CDS YP_006090723.1 386594323 12704321 complement(792709..793416) 1 NC_017625.1 PFAM: Endonuclease I; KEGG: sbc:SbBS512_E3377 endonuclease I; Deoxyribonuclease I 793416 12704321 EcDH1_0750 Escherichia coli DH1 Deoxyribonuclease I YP_006090723.1 792709 R 536056 CDS YP_006090724.1 386594324 12704322 complement(793511..794008) 1 NC_017625.1 PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: sbo:SBO_3046 hypothetical protein; hypothetical protein 794008 12704322 EcDH1_0751 Escherichia coli DH1 hypothetical protein YP_006090724.1 793511 R 536056 CDS YP_006090725.1 386594325 12704323 complement(794085..795479) 1 NC_017625.1 KEGG: sdy:SDY_3129 galactose-proton symport of transport system; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 795479 12704323 EcDH1_0752 Escherichia coli DH1 sugar transporter YP_006090725.1 794085 R 536056 CDS YP_006090726.1 386594326 12704324 complement(795903..797057) 1 NC_017625.1 PFAM: S-adenosylmethionine synthetase; KEGG: sdy:SDY_3130 S-adenosylmethionine synthetase; Non-specific protein-tyrosine kinase 797057 12704324 EcDH1_0753 Escherichia coli DH1 Non-specific protein-tyrosine kinase YP_006090726.1 795903 R 536056 CDS YP_006090727.1 386594327 12704325 797113..797364 1 NC_017625.1 KEGG: sdy:SDY_3131 hypothetical protein; hypothetical protein 797364 12704325 EcDH1_0754 Escherichia coli DH1 hypothetical protein YP_006090727.1 797113 D 536056 CDS YP_006090728.1 386594328 12704326 complement(797361..797576) 1 NC_017625.1 KEGG: sbo:SBO_3049 hypothetical protein; hypothetical protein 797576 12704326 EcDH1_0755 Escherichia coli DH1 hypothetical protein YP_006090728.1 797361 R 536056 CDS YP_006090729.1 386594329 12704327 797852..799828 1 NC_017625.1 TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sdy:SDY_3134 arginine decarboxylase; arginine decarboxylase 799828 12704327 EcDH1_0756 Escherichia coli DH1 arginine decarboxylase YP_006090729.1 797852 D 536056 CDS YP_006090730.1 386594330 12704328 799966..800886 1 NC_017625.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sbo:SBO_3052 agmatinase; agmatinase 800886 12704328 EcDH1_0757 Escherichia coli DH1 agmatinase YP_006090730.1 799966 D 536056 CDS YP_006090731.1 386594331 12704329 complement(801092..801850) 1 NC_017625.1 PFAM: peptidase M48 Ste24p; KEGG: sbc:SbBS512_E3369 peptidase, M48B family; peptidase M48 Ste24p 801850 12704329 EcDH1_0758 Escherichia coli DH1 peptidase M48 Ste24p YP_006090731.1 801092 R 536056 CDS YP_006090732.1 386594332 12704330 802128..804119 1 NC_017625.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sbo:SBO_3054 transketolase; transketolase 804119 12704330 EcDH1_0759 Escherichia coli DH1 transketolase YP_006090732.1 802128 D 536056 CDS YP_006090733.1 386594333 12704331 804433..804876 1 NC_017625.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ssn:SSON_3088 predicted mannitol-specific enzyme IIA component of PTS; putative PTS IIA-like nitrogen-regulatory protein PtsN 804876 12704331 EcDH1_0760 Escherichia coli DH1 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_006090733.1 804433 D 536056 CDS YP_006090734.1 386594334 12704332 804904..806292 1 NC_017625.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sbc:SbBS512_E3365 PTS system, mannitol-specific cryptic EIICB component; PTS system mannitol-specific transporter subunit IIC 806292 12704332 EcDH1_0761 Escherichia coli DH1 PTS system mannitol-specific transporter subunit IIC YP_006090734.1 804904 D 536056 CDS YP_006090735.1 386594335 12704333 806307..807584 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfv:SFV_2983 putative oxidoreductase; alcohol dehydrogenase 807584 12704333 EcDH1_0762 Escherichia coli DH1 alcohol dehydrogenase YP_006090735.1 806307 D 536056 CDS YP_006090736.1 386594336 12704334 807581..808546 1 NC_017625.1 TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: sfv:SFV_2982 fructose-1,6-bisphosphatase II-like protein; fructose-1,6-bisphosphatase 808546 12704334 EcDH1_0763 Escherichia coli DH1 fructose-1,6-bisphosphatase YP_006090736.1 807581 D 536056 CDS YP_006090737.1 386594337 12704335 808568..809077 1 NC_017625.1 PFAM: Mannitol repressor; KEGG: sbo:SBO_3059 putative DNA-binding transcriptional regulator; mannitol repressor, MtlR 809077 12704335 EcDH1_0764 Escherichia coli DH1 mannitol repressor, MtlR YP_006090737.1 808568 D 536056 CDS YP_006090738.1 386594338 12704336 809074..809787 1 NC_017625.1 KEGG: sbo:SBO_3060 putative fructose transport system kinase; putative fructose transport system kinase 809787 12704336 EcDH1_0765 Escherichia coli DH1 putative fructose transport system kinase YP_006090738.1 809074 D 536056 CDS YP_006090739.1 386594339 12704337 810072..811091 1 NC_017625.1 KEGG: sbc:SbBS512_E3352 D-erythrose-4-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase 811091 12704337 EcDH1_0766 Escherichia coli DH1 D-erythrose-4-phosphate dehydrogenase YP_006090739.1 810072 D 536056 CDS YP_006090740.1 386594340 12704338 811141..812304 1 NC_017625.1 PFAM: phosphoglycerate kinase; KEGG: sbo:SBO_3067 phosphoglycerate kinase; phosphoglycerate kinase 812304 12704338 EcDH1_0767 Escherichia coli DH1 phosphoglycerate kinase YP_006090740.1 811141 D 536056 CDS YP_006090741.1 386594341 12704339 812519..813598 1 NC_017625.1 KEGG: sdy:SDY_3157 fructose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase 813598 12704339 EcDH1_0768 Escherichia coli DH1 fructose-bisphosphate aldolase YP_006090741.1 812519 D 536056 CDS YP_006090742.1 386594342 12704340 813956..814816 1 NC_017625.1 PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; KEGG: sbc:SbBS512_E3349 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 814816 12704340 EcDH1_0769 Escherichia coli DH1 mechanosensitive ion channel protein MscS YP_006090742.1 813956 D 536056 CDS YP_006090743.1 386594343 12704341 814955..815590 1 NC_017625.1 TIGRFAM: L-lysine exporter; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sdy:SDY_3159 arginine exporter protein; L-lysine exporter 815590 12704341 EcDH1_0770 Escherichia coli DH1 L-lysine exporter YP_006090743.1 814955 D 536056 CDS YP_006090744.1 386594344 12704342 815683..816423 1 NC_017625.1 PFAM: protein of unknown function DUF541; KEGG: sdy:SDY_3160 hypothetical protein; hypothetical protein 816423 12704342 EcDH1_0771 Escherichia coli DH1 hypothetical protein YP_006090744.1 815683 D 536056 CDS YP_006090745.1 386594345 12704343 816590..817486 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E3344 transcriptional regulator, LysR family; LysR family transcriptional regulator 817486 12704343 EcDH1_0772 Escherichia coli DH1 LysR family transcriptional regulator YP_006090745.1 816590 D 536056 CDS YP_006090746.1 386594346 12704344 complement(817483..818961) 1 NC_017625.1 KEGG: ssn:SSON_3071 putative coenzyme A transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 818961 12704344 EcDH1_0773 Escherichia coli DH1 succinate CoA transferase YP_006090746.1 817483 R 536056 CDS YP_006090747.1 386594347 12704345 complement(818985..819770) 1 NC_017625.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sbc:SbBS512_E3341 methylmalonyl-CoA decarboxylase; Enoyl-CoA hydratase/isomerase 819770 12704345 EcDH1_0774 Escherichia coli DH1 Enoyl-CoA hydratase/isomerase YP_006090747.1 818985 R 536056 CDS YP_006090748.1 386594348 12704346 complement(819781..820776) 1 NC_017625.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: ssn:SSON_3069 arginine/ornithine transport system ATPase; LAO/AO transport system ATPase 820776 12704346 EcDH1_0775 Escherichia coli DH1 LAO/AO transport system ATPase YP_006090748.1 819781 R 536056 CDS YP_006090749.1 386594349 12704347 complement(820769..822913) 1 NC_017625.1 KEGG: sfv:SFV_2963 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 822913 12704347 EcDH1_0776 Escherichia coli DH1 methylmalonyl-CoA mutase large subunit YP_006090749.1 820769 R 536056 CDS YP_006090750.1 386594350 12704348 complement(823117..824010) 1 NC_017625.1 TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3165 chromosome replication initiation inhibitor protein; LysR family transcriptional regulator ArgP 824010 12704348 EcDH1_0777 Escherichia coli DH1 LysR family transcriptional regulator ArgP YP_006090750.1 823117 R 536056 CDS YP_006090751.1 386594351 12704349 824152..824382 1 NC_017625.1 KEGG: cak:Caul_5119 LysR family transcriptional regulator; LysR family transcriptional regulator 824382 12704349 EcDH1_0778 Escherichia coli DH1 LysR family transcriptional regulator YP_006090751.1 824152 D 536056 CDS YP_006090752.1 386594352 12704350 824438..825097 1 NC_017625.1 KEGG: sdy:SDY_3168 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 825097 12704350 EcDH1_0779 Escherichia coli DH1 ribose 5-phosphate isomerase YP_006090752.1 824438 D 536056 CDS YP_006090753.1 386594353 12704351 825353..826585 1 NC_017625.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbo:SBO_3080 D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 826585 12704351 EcDH1_0780 Escherichia coli DH1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_006090753.1 825353 D 536056 CDS YP_006090754.1 386594354 12704352 complement(826974..827576) 1 NC_017625.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sfv:SFV_2959 putative ligase; 5-formyltetrahydrofolate cyclo-ligase 827576 12704352 EcDH1_0781 Escherichia coli DH1 5-formyltetrahydrofolate cyclo-ligase YP_006090754.1 826974 R 536056 CDS YP_006090755.1 386594355 12704354 complement(827822..828151) 1 NC_017625.1 PFAM: protein of unknown function DUF710; KEGG: sbc:SbBS512_E3331 hypothetical protein; hypothetical protein 828151 12704354 EcDH1_0782 Escherichia coli DH1 hypothetical protein YP_006090755.1 827822 R 536056 CDS YP_006090756.1 386594356 12704355 828313..828897 1 NC_017625.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: sfv:SFV_2957 hypothetical protein; yecA family protein 828897 12704355 EcDH1_0783 Escherichia coli DH1 yecA family protein YP_006090756.1 828313 D 536056 CDS YP_006090757.1 386594357 12704356 828923..830248 1 NC_017625.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: sdy:SDY_3173 proline aminopeptidase P II; peptidase M24 830248 12704356 EcDH1_0784 Escherichia coli DH1 peptidase M24 YP_006090757.1 828923 D 536056 CDS YP_006090758.1 386594358 12704357 830245..831423 1 NC_017625.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E3328 2-octaprenyl-6-methoxyphenol hydroxylase; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 831423 12704357 EcDH1_0785 Escherichia coli DH1 UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase YP_006090758.1 830245 D 536056 CDS YP_006090759.1 386594359 12704358 831446..832648 1 NC_017625.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ssn:SSON_3059 hypothetical protein; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 832648 12704358 EcDH1_0786 Escherichia coli DH1 UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase YP_006090759.1 831446 D 536056 CDS YP_006090760.1 386594360 12704359 833096..834190 1 NC_017625.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: sbo:SBO_3087 glycine cleavage system aminomethyltransferase T; glycine cleavage system T protein 834190 12704359 EcDH1_0787 Escherichia coli DH1 glycine cleavage system T protein YP_006090760.1 833096 D 536056 CDS YP_006090761.1 386594361 12704360 834214..834603 1 NC_017625.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: set:SEN2897 glycine cleavage system H protein; glycine cleavage system H protein 834603 12704360 EcDH1_0788 Escherichia coli DH1 glycine cleavage system H protein YP_006090761.1 834214 D 536056 CDS YP_006090762.1 386594362 12704361 834722..837595 1 NC_017625.1 KEGG: ssn:SSON_3056 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: glycine cleavage system P-protein; glycine dehydrogenase 837595 12704361 EcDH1_0789 Escherichia coli DH1 glycine dehydrogenase YP_006090762.1 834722 D 536056 CDS YP_006090763.1 386594363 12704362 837862..838605 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sfx:S3087 hypothetical protein; short-chain dehydrogenase/reductase SDR 838605 12704362 EcDH1_0790 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006090763.1 837862 D 536056 CDS YP_006090764.1 386594364 12704363 complement(838662..840095) 1 NC_017625.1 PFAM: glycoside hydrolase family 1; KEGG: ssn:SSON_3054 6-phospho-beta-glucosidase A, cryptic; glycoside hydrolase 840095 12704363 EcDH1_0791 Escherichia coli DH1 glycoside hydrolase YP_006090764.1 838662 R 536056 CDS YP_006090765.1 386594365 12704364 840140..840451 1 NC_017625.1 PFAM: protein of unknown function DUF437; KEGG: sdy:SDY_3181 hypothetical protein; hypothetical protein 840451 12704364 EcDH1_0792 Escherichia coli DH1 hypothetical protein YP_006090765.1 840140 D 536056 CDS YP_006090766.1 386594366 12704365 840615..841274 1 NC_017625.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: sbc:SbBS512_E3320 channel protein, hemolysin III family; hemolysin III family channel protein 841274 12704365 EcDH1_0793 Escherichia coli DH1 hemolysin III family channel protein YP_006090766.1 840615 D 536056 CDS YP_006090767.1 386594367 12704366 complement(841470..842450) 1 NC_017625.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sfv:SFV_2946 putative global regulator; folate-binding protein YgfZ 842450 12704366 EcDH1_0794 Escherichia coli DH1 folate-binding protein YgfZ YP_006090767.1 841470 R 536056 CDS YP_006090768.1 386594368 12704367 842693..842959 1 NC_017625.1 PFAM: protein of unknown function DUF339; KEGG: sdy:SDY_3185 hypothetical protein; hypothetical protein 842959 12704367 EcDH1_0795 Escherichia coli DH1 hypothetical protein YP_006090768.1 842693 D 536056 CDS YP_006090769.1 386594369 12704368 842940..843347 1 NC_017625.1 PFAM: protein of unknown function DUF1434; KEGG: sbc:SbBS512_E3316 hypothetical protein; hypothetical protein 843347 12704368 EcDH1_0796 Escherichia coli DH1 hypothetical protein YP_006090769.1 842940 D 536056 CDS YP_006090770.1 386594370 12704369 complement(843387..843908) 1 NC_017625.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_3187 flavodoxin FldB; flavodoxin 843908 12704369 EcDH1_0797 Escherichia coli DH1 flavodoxin YP_006090770.1 843387 R 536056 CDS YP_006090771.1 386594371 12704370 844020..844916 1 NC_017625.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sdy:SDY_3188 site-specific tyrosine recombinase XerD; tyrosine recombinase XerD 844916 12704370 EcDH1_0798 Escherichia coli DH1 tyrosine recombinase XerD YP_006090771.1 844020 D 536056 CDS YP_006090772.1 386594372 12704371 844941..845651 1 NC_017625.1 PFAM: Thioredoxin, conserved site; KEGG: sfv:SFV_2941 thiol:disulfide interchange protein DsbC; thioredoxin 845651 12704371 EcDH1_0799 Escherichia coli DH1 thioredoxin YP_006090772.1 844941 D 536056 CDS YP_006090773.1 386594373 12704372 845657..847390 1 NC_017625.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: sbo:SBO_3100 ssDNA exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 847390 12704372 EcDH1_0800 Escherichia coli DH1 single-stranded-DNA-specific exonuclease RecJ YP_006090773.1 845657 D 536056 CDS YP_006090774.1 386594374 12704373 join(847481..847555,847557..848579) 1 NC_017625.1 KEGG: sfx:S3076 peptide chain release factor 2; hypothetical protein 848579 12704373 EcDH1_0801 Escherichia coli DH1 hypothetical protein YP_006090774.1 847481 D 536056 CDS YP_006090775.1 386594375 12704374 848589..850106 1 NC_017625.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sbc:SbBS512_E3309 lysyl-tRNA synthetase LysS; lysyl-tRNA synthetase 850106 12704374 EcDH1_0802 Escherichia coli DH1 lysyl-tRNA synthetase YP_006090775.1 848589 D 536056 CDS YP_006090776.1 386594376 12704375 complement(850150..850698) 1 NC_017625.1 KEGG: sdy:SDY_3193 isopentenyl-diphosphate delta-isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase; isopentenyl-diphosphate delta-isomerase 850698 12704375 EcDH1_0803 Escherichia coli DH1 isopentenyl-diphosphate delta-isomerase YP_006090776.1 850150 R 536056 CDS YP_006090777.1 386594377 12704376 complement(850821..850946) 1 NC_017625.1 KEGG: sbc:SbBS512_E3307 hypothetical protein; hypothetical protein 850946 12704376 EcDH1_0804 Escherichia coli DH1 hypothetical protein YP_006090777.1 850821 R 536056 CDS YP_006090778.1 386594378 12704377 complement(850948..852396) 1 NC_017625.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_3041 putative permease; xanthine permease 852396 12704377 EcDH1_0805 Escherichia coli DH1 xanthine permease YP_006090778.1 850948 R 536056 CDS YP_006090779.1 386594379 12704378 852832..854751 1 NC_017625.1 TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: ssn:SSON_3039 putative oxidoreductase Fe-S binding subunit; glutamate synthase, small subunit 854751 12704378 EcDH1_0806 Escherichia coli DH1 glutamate synthase, small subunit YP_006090779.1 852832 D 536056 CDS YP_006090780.1 386594380 12704379 854751..855239 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ssn:SSON_3038 putative oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin 855239 12704379 EcDH1_0807 Escherichia coli DH1 4Fe-4S ferredoxin YP_006090780.1 854751 D 536056 CDS YP_006090781.1 386594381 12704380 complement(855275..856642) 1 NC_017625.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: spe:Spro_4431 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 856642 12704380 EcDH1_0808 Escherichia coli DH1 xanthine/uracil/vitamin C permease YP_006090781.1 855275 R 536056 CDS YP_006090782.1 386594382 12704381 complement(856678..857994) 1 NC_017625.1 TIGRFAM: guanine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: esa:ESA_pESA3p05529 guanine deaminase; guanine deaminase 857994 12704381 EcDH1_0809 Escherichia coli DH1 guanine deaminase YP_006090782.1 856678 R 536056 CDS YP_006090783.1 386594383 12704382 complement(858012..859412) 1 NC_017625.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: aha:AHA_2174 xanthine/uracil permease family protein; uracil-xanthine permease 859412 12704382 EcDH1_0810 Escherichia coli DH1 uracil-xanthine permease YP_006090783.1 858012 R 536056 CDS YP_006090784.1 386594384 12704383 complement(859577..862447) 1 NC_017625.1 KEGG: ssn:SSON_3035 putative dehydrogenase; TIGRFAM: selenate reductase, molybdenum-binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; selenate reductase, molybdenum-binding subunit 862447 12704383 EcDH1_0811 Escherichia coli DH1 selenate reductase, molybdenum-binding subunit YP_006090784.1 859577 R 536056 CDS YP_006090785.1 386594385 12704384 complement(862444..863223) 1 NC_017625.1 TIGRFAM: selenate reductase, FAD-binding subunit; PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: ssn:SSON_3034 hypothetical protein; selenate reductase, FAD-binding subunit 863223 12704384 EcDH1_0812 Escherichia coli DH1 selenate reductase, FAD-binding subunit YP_006090785.1 862444 R 536056 CDS YP_006090786.1 386594386 12704385 complement(863274..864602) 1 NC_017625.1 TIGRFAM: selenium metabolism protein SsnA; PFAM: amidohydrolase; KEGG: ssn:SSON_3033 putative chlorohydrolase/aminohydrolase; selenium metabolism protein SsnA 864602 12704385 EcDH1_0813 Escherichia coli DH1 selenium metabolism protein SsnA YP_006090786.1 863274 R 536056 CDS YP_006090787.1 386594387 12704386 complement(864605..867703) 1 NC_017625.1 TIGRFAM: selenate reductase YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aha:AHA_2170 putative selenate reductase subunit YgfK; selenate reductase YgfK 867703 12704386 EcDH1_0814 Escherichia coli DH1 selenate reductase YgfK YP_006090787.1 864605 R 536056 CDS YP_006090788.1 386594388 12704387 complement(868025..868603) 1 NC_017625.1 TIGRFAM: molybdenum hydroxylase accessory protein, YgfJ family; KEGG: ssn:SSON_3028 hypothetical protein; molybdenum hydroxylase accessory protein, YgfJ family 868603 12704387 EcDH1_0815 Escherichia coli DH1 molybdenum hydroxylase accessory protein, YgfJ family YP_006090788.1 868025 R 536056 CDS YP_006090789.1 386594389 12704388 868706..869476 1 NC_017625.1 KEGG: ssn:SSON_3027 hypothetical protein; hypothetical protein 869476 12704388 EcDH1_0816 Escherichia coli DH1 hypothetical protein YP_006090789.1 868706 D 536056 CDS YP_006090790.1 386594390 12704389 869524..871149 1 NC_017625.1 TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; PFAM: biotin/lipoyl attachment domain-containing protein; protein of unknown function DUF182; KEGG: sbo:SBO_3109 putative synthase; selenium-dependent molybdenum hydroxylase system protein, YqeB family 871149 12704389 EcDH1_0817 Escherichia coli DH1 selenium-dependent molybdenum hydroxylase system protein, YqeB family YP_006090790.1 869524 D 536056 CDS YP_006090791.1 386594391 12704390 complement(871370..872302) 1 NC_017625.1 KEGG: sbo:SBO_3110 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase 872302 12704390 EcDH1_0818 Escherichia coli DH1 carbamate kinase YP_006090791.1 871370 R 536056 CDS YP_006090792.1 386594392 12704391 complement(872350..873735) 1 NC_017625.1 KEGG: sbo:SBO_3111 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; dihydropyrimidinase 873735 12704391 EcDH1_0819 Escherichia coli DH1 dihydropyrimidinase YP_006090792.1 872350 R 536056 CDS YP_006090793.1 386594393 12704392 complement(873788..874999) 1 NC_017625.1 TIGRFAM: M20/DapE family protein YgeY; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sbo:SBO_3112 peptidase; M20/DapE family protein YgeY 874999 12704392 EcDH1_0820 Escherichia coli DH1 M20/DapE family protein YgeY YP_006090793.1 873788 R 536056 CDS YP_006090794.1 386594394 12704393 complement(875057..876253) 1 NC_017625.1 TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sbo:SBO_3113 diaminopropionate ammonia-lyase; diaminopropionate ammonia-lyase 876253 12704393 EcDH1_0821 Escherichia coli DH1 diaminopropionate ammonia-lyase YP_006090794.1 875057 R 536056 CDS YP_006090795.1 386594395 12704394 complement(876311..877498) 1 NC_017625.1 TIGRFAM: carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ssn:SSON_3021 hypothetical protein; carbamoyltransferase YgeW 877498 12704394 EcDH1_0822 Escherichia coli DH1 carbamoyltransferase YgeW YP_006090795.1 876311 R 536056 CDS YP_006090796.1 386594396 12704395 877977..879755 1 NC_017625.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: PAS domain containing protein; AAA ATPase; KEGG: ssn:SSON_3020 putative transcriptional regulator; PAS modulated Fis family sigma-54-specific transcriptional regulator 879755 12704395 EcDH1_0823 Escherichia coli DH1 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_006090796.1 877977 D 536056 CDS YP_006090797.1 386594397 12704396 complement(879795..880274) 1 NC_017625.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: sbo:SBO_3117 xanthine dehydrogenase subunit XdhC; (2Fe-2S)-binding domain-containing protein 880274 12704396 EcDH1_0824 Escherichia coli DH1 (2Fe-2S)-binding domain-containing protein YP_006090797.1 879795 R 536056 CDS YP_006090798.1 386594398 12704397 complement(880271..881149) 1 NC_017625.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sfv:SFV_2932 xanthine dehydrogenase subunit XdhB; molybdopterin dehydrogenase FAD-binding protein 881149 12704397 EcDH1_0825 Escherichia coli DH1 molybdopterin dehydrogenase FAD-binding protein YP_006090798.1 880271 R 536056 CDS YP_006090799.1 386594399 12704398 complement(881160..883457) 1 NC_017625.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: sfv:SFV_2931 xanthine dehydrogenase subunit XdhA; xanthine dehydrogenase 883457 12704398 EcDH1_0826 Escherichia coli DH1 xanthine dehydrogenase YP_006090799.1 881160 R 536056 CDS YP_006090800.1 386594400 12704399 883872..884627 1 NC_017625.1 PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: sbc:SbBS512_E3304 peptidase, M23B family; peptidase M23 884627 12704399 EcDH1_0827 Escherichia coli DH1 peptidase M23 YP_006090800.1 883872 D 536056 CDS YP_006090801.1 386594401 12704401 884935..885729 1 NC_017625.1 KEGG: ssn:SSON_3014 hypothetical protein; hypothetical protein 885729 12704401 EcDH1_0828 Escherichia coli DH1 hypothetical protein YP_006090801.1 884935 D 536056 CDS YP_006090802.1 386594402 12704402 886163..886528 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 886528 12704402 EcDH1_0829 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006090802.1 886163 D 536056 CDS YP_006090803.1 386594403 12704403 886486..887391 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 887391 12704403 EcDH1_0830 Escherichia coli DH1 integrase catalytic subunit YP_006090803.1 886486 D 536056 CDS YP_006090804.1 386594404 12704404 887743..888015 1 NC_017625.1 hypothetical protein 888015 12704404 EcDH1_0831 Escherichia coli DH1 hypothetical protein YP_006090804.1 887743 D 536056 CDS YP_006090805.1 386594405 12704405 888018..888449 1 NC_017625.1 hypothetical protein 888449 12704405 EcDH1_0832 Escherichia coli DH1 hypothetical protein YP_006090805.1 888018 D 536056 CDS YP_006090806.1 386594406 12704407 complement(889348..889722) 1 NC_017625.1 PFAM: Lytic transglycosylase catalytic; KEGG: stt:t4248 hypothetical protein; lytic transglycosylase 889722 12704407 EcDH1_0834 Escherichia coli DH1 lytic transglycosylase YP_006090806.1 889348 R 536056 CDS YP_006090807.1 386594407 12704408 complement(889907..890125) 1 NC_017625.1 hypothetical protein 890125 12704408 EcDH1_0835 Escherichia coli DH1 hypothetical protein YP_006090807.1 889907 R 536056 CDS YP_006090808.1 386594408 12704409 complement(890293..891669) 1 NC_017625.1 PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: cvi:CV_2640 invasion protein regulator; transcriptional regulator CadC 891669 12704409 EcDH1_0836 Escherichia coli DH1 transcriptional regulator CadC YP_006090808.1 890293 R 536056 CDS YP_006090809.1 386594409 12704410 complement(892004..892495) 1 NC_017625.1 PFAM: Tetratricopeptide TPR_3; KEGG: ssn:SSON_3011 hypothetical protein; Tetratricopeptide TPR_3 892495 12704410 EcDH1_0837 Escherichia coli DH1 Tetratricopeptide TPR_3 YP_006090809.1 892004 R 536056 CDS YP_006090810.1 386594410 12704411 complement(892763..893209) 1 NC_017625.1 KEGG: ssn:SSON_3010 hypothetical protein; hypothetical protein 893209 12704411 EcDH1_0838 Escherichia coli DH1 hypothetical protein YP_006090810.1 892763 R 536056 CDS YP_006090811.1 386594411 12704412 893403..893828 1 NC_017625.1 KEGG: hypothetical protein; hypothetical protein 893828 12704412 EcDH1_0839 Escherichia coli DH1 hypothetical protein YP_006090811.1 893403 D 536056 CDS YP_006090812.1 386594412 12704413 893819..893944 1 NC_017625.1 hypothetical protein 893944 12704413 EcDH1_0840 Escherichia coli DH1 hypothetical protein YP_006090812.1 893819 D 536056 CDS YP_006090813.1 386594413 12704414 complement(893977..894459) 1 NC_017625.1 KEGG: ssn:SSON_3009 hypothetical protein; hypothetical protein 894459 12704414 EcDH1_0841 Escherichia coli DH1 hypothetical protein YP_006090813.1 893977 R 536056 CDS YP_006090814.1 386594414 12704415 complement(894452..895261) 1 NC_017625.1 PFAM: transcriptional regulator domain protein; KEGG: kpn:KPN_00272 putative sensory transducer; transcriptional regulator CadC 895261 12704415 EcDH1_0842 Escherichia coli DH1 transcriptional regulator CadC YP_006090814.1 894452 R 536056 CDS YP_006090815.1 386594415 12704416 895382..895513 1 NC_017625.1 hypothetical protein 895513 12704416 EcDH1_0843 Escherichia coli DH1 hypothetical protein YP_006090815.1 895382 D 536056 CDS YP_006090816.1 386594416 12704417 complement(895595..896227) 1 NC_017625.1 KEGG: ssn:SSON_3006 hypothetical protein; hypothetical protein 896227 12704417 EcDH1_0844 Escherichia coli DH1 hypothetical protein YP_006090816.1 895595 R 536056 CDS YP_006090817.1 386594417 12704418 complement(896687..897916) 1 NC_017625.1 TIGRFAM: serine transporter; PFAM: Amino acid transporter transmembrane; KEGG: sbc:SbBS512_E3015 serine transporter family protein; serine transporter 897916 12704418 EcDH1_0845 Escherichia coli DH1 serine transporter YP_006090817.1 896687 R 536056 CDS YP_006090818.1 386594418 12704419 898171..899352 1 NC_017625.1 KEGG: ssn:SSON_3004 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 899352 12704419 EcDH1_0846 Escherichia coli DH1 acetyl-CoA acetyltransferase YP_006090818.1 898171 D 536056 CDS YP_006090819.1 386594419 12704420 899639..900475 1 NC_017625.1 PFAM: 5-keto 4-deoxyuronate isomerase; KEGG: ssn:SSON_3003 5-keto-4-deoxyuronate isomerase; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 900475 12704420 EcDH1_0847 Escherichia coli DH1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YP_006090819.1 899639 D 536056 CDS YP_006090820.1 386594420 12704421 900505..901266 1 NC_017625.1 TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_2734 2-deoxy-D-gluconate 3-dehydrogenase; 2-deoxy-D-gluconate 3-dehydrogenase 901266 12704421 EcDH1_0848 Escherichia coli DH1 2-deoxy-D-gluconate 3-dehydrogenase YP_006090820.1 900505 D 536056 CDS YP_006090821.1 386594421 12704422 901581..902999 1 NC_017625.1 KEGG: ssn:SSON_3001 low-affinity L-arabinose transport system proton symport protein; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 902999 12704422 EcDH1_0849 Escherichia coli DH1 sugar transporter YP_006090821.1 901581 D 536056 CDS YP_006090822.1 386594422 12704423 903128..903820 1 NC_017625.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: sbc:SbBS512_E3023 Asp/Glu/hydantoin racemase; aspartate racemase 903820 12704423 EcDH1_0850 Escherichia coli DH1 aspartate racemase YP_006090822.1 903128 D 536056 CDS YP_006090823.1 386594423 12704424 complement(903807..904742) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfv:SFV_2917 DNA-binding transcriptional regulator LysR; LysR family transcriptional regulator 904742 12704424 EcDH1_0851 Escherichia coli DH1 LysR family transcriptional regulator YP_006090823.1 903807 R 536056 CDS YP_006090824.1 386594424 12704425 904864..906126 1 NC_017625.1 KEGG: ssn:SSON_2998 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 906126 12704425 EcDH1_0852 Escherichia coli DH1 diaminopimelate decarboxylase YP_006090824.1 904864 D 536056 CDS YP_006090825.1 386594425 12704426 complement(906133..907164) 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_2997 DNA-binding transcriptional repressor; LacI family transcriptional regulator 907164 12704426 EcDH1_0853 Escherichia coli DH1 LacI family transcriptional regulator YP_006090825.1 906133 R 536056 CDS YP_006090826.1 386594426 12704427 907749..909908 1 NC_017625.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; KEGG: sfv:SFV_2914 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; AMP-dependent synthetase and ligase 909908 12704427 EcDH1_0854 Escherichia coli DH1 AMP-dependent synthetase and ligase YP_006090826.1 907749 D 536056 CDS YP_006090827.1 386594427 12704428 909901..911094 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3027 lysophospholipid transporter; major facilitator superfamily protein 911094 12704428 EcDH1_0855 Escherichia coli DH1 major facilitator superfamily protein YP_006090827.1 909901 D 536056 CDS YP_006090828.1 386594428 12704429 complement(911126..912166) 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: sfv:SFV_2912 putative aldo-keto reductase; aldo/keto reductase 912166 12704429 EcDH1_0856 Escherichia coli DH1 aldo/keto reductase YP_006090828.1 911126 R 536056 CDS YP_006090829.1 386594429 12704430 complement(912274..912492) 1 NC_017625.1 PFAM: protein of unknown function DUF903; KEGG: sdy:SDY_3050 hypothetical protein; hypothetical protein 912492 12704430 EcDH1_0857 Escherichia coli DH1 hypothetical protein YP_006090829.1 912274 R 536056 CDS YP_006090830.1 386594430 12704431 complement(912630..913343) 1 NC_017625.1 PFAM: Integral membrane protein TerC; KEGG: sdy:SDY_3049 putative transport protein; integral membrane protein TerC 913343 12704431 EcDH1_0858 Escherichia coli DH1 integral membrane protein TerC YP_006090830.1 912630 R 536056 CDS YP_006090831.1 386594431 12704432 complement(913412..914101) 1 NC_017625.1 TIGRFAM: DNA mismatch repair endonuclease mutH; PFAM: DNA mismatch repair protein MutH; KEGG: sdy:SDY_3048 DNA mismatch repair protein; DNA mismatch repair endonuclease mutH 914101 12704432 EcDH1_0859 Escherichia coli DH1 DNA mismatch repair endonuclease mutH YP_006090831.1 913412 R 536056 CDS YP_006090832.1 386594432 12704433 914287..914433 1 NC_017625.1 KEGG: stm:STM3004.1n hypothetical protein; hypothetical protein 914433 12704433 EcDH1_0860 Escherichia coli DH1 hypothetical protein YP_006090832.1 914287 D 536056 CDS YP_006090833.1 386594433 12704434 914786..915316 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_3047 dinucleoside polyphosphate hydrolase; NUDIX hydrolase 915316 12704434 EcDH1_0861 Escherichia coli DH1 NUDIX hydrolase YP_006090833.1 914786 D 536056 CDS YP_006090834.1 386594434 12704435 915329..917575 1 NC_017625.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: ssn:SSON_2986 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; protein PtsP 917575 12704435 EcDH1_0862 Escherichia coli DH1 protein PtsP YP_006090834.1 915329 D 536056 CDS YP_006090835.1 386594435 12704436 917726..918601 1 NC_017625.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sdy:SDY_3045 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 918601 12704436 EcDH1_0863 Escherichia coli DH1 prolipoprotein diacylglyceryl transferase YP_006090835.1 917726 D 536056 CDS YP_006090836.1 386594436 12704437 918608..919402 1 NC_017625.1 PFAM: thymidylate synthase; KEGG: ssn:SSON_2984 thymidylate synthase; Thymidylate synthase 919402 12704437 EcDH1_0864 Escherichia coli DH1 Thymidylate synthase YP_006090836.1 918608 D 536056 CDS YP_006090837.1 386594437 12704438 919586..920056 1 NC_017625.1 KEGG: sdy:SDY_3043 hypothetical protein; hypothetical protein 920056 12704438 EcDH1_0865 Escherichia coli DH1 hypothetical protein YP_006090837.1 919586 D 536056 CDS YP_006090838.1 386594438 12704439 920047..920610 1 NC_017625.1 KEGG: sbc:SbBS512_E3037 prepilin peptidase dependent protein B; prepilin peptidase dependent protein B 920610 12704439 EcDH1_0866 Escherichia coli DH1 prepilin peptidase dependent protein B YP_006090838.1 920047 D 536056 CDS YP_006090839.1 386594439 12704440 920607..921014 1 NC_017625.1 KEGG: sbc:SbBS512_E3038 hypothetical protein; hypothetical protein 921014 12704440 EcDH1_0867 Escherichia coli DH1 hypothetical protein YP_006090839.1 920607 D 536056 CDS YP_006090840.1 386594440 12704441 920999..921322 1 NC_017625.1 KEGG: sbc:SbBS512_E3039 prepilin peptidase-dependent protein C; prepilin peptidase-dependent protein C 921322 12704441 EcDH1_0868 Escherichia coli DH1 prepilin peptidase-dependent protein C YP_006090840.1 920999 D 536056 CDS YP_006090841.1 386594441 12704442 921335..924703 1 NC_017625.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: ssn:SSON_2979 exonuclease V subunit gamma; exodeoxyribonuclease V subunit gamma 924703 12704442 EcDH1_0869 Escherichia coli DH1 exodeoxyribonuclease V subunit gamma YP_006090841.1 921335 D 536056 CDS YP_006090842.1 386594442 12704443 924879..927767 1 NC_017625.1 PFAM: peptidase M16 domain protein; KEGG: sfv:SFV_2899 protease III; peptidase M16 domain-containing protein 927767 12704443 EcDH1_0870 Escherichia coli DH1 peptidase M16 domain-containing protein YP_006090842.1 924879 D 536056 CDS YP_006090843.1 386594443 12704444 927760..931302 1 NC_017625.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: sdy:SDY_3037 exonuclease V subunit beta; exodeoxyribonuclease V subunit beta 931302 12704444 EcDH1_0871 Escherichia coli DH1 exodeoxyribonuclease V subunit beta YP_006090843.1 927760 D 536056 CDS YP_006090844.1 386594444 12704445 931302..933128 1 NC_017625.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: sbc:SbBS512_E3043 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 933128 12704445 EcDH1_0872 Escherichia coli DH1 exodeoxyribonuclease V subunit alpha YP_006090844.1 931302 D 536056 CDS YP_006090845.1 386594445 12704446 complement(933190..934521) 1 NC_017625.1 TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; KEGG: sbo:SBO_2708 N-acetylglutamate synthase; amino-acid N-acetyltransferase 934521 12704446 EcDH1_0873 Escherichia coli DH1 amino-acid N-acetyltransferase YP_006090845.1 933190 R 536056 CDS YP_006090846.1 386594446 12704447 934753..936006 1 NC_017625.1 PFAM: cell wall hydrolase/autolysin; KEGG: sbc:SbBS512_E3045 N-acetylmuramoyl-L-alanine amidase AmiC; N-acetylmuramoyl-L-alanine amidase 936006 12704447 EcDH1_0874 Escherichia coli DH1 N-acetylmuramoyl-L-alanine amidase YP_006090846.1 934753 D 536056 CDS YP_006090847.1 386594447 12704451 936585..937682 1 NC_017625.1 PFAM: MltA domain protein; 3D domain protein; KEGG: ssn:SSON_2970 murein transglycosylase A; MltA domain-containing protein 937682 12704451 EcDH1_0875 Escherichia coli DH1 MltA domain-containing protein YP_006090847.1 936585 D 536056 CDS YP_006090848.1 386594448 12704452 937921..938727 1 NC_017625.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ssn:SSON_2969 putative enzyme; UBA/THIF-type NAD/FAD binding protein 938727 12704452 EcDH1_0876 Escherichia coli DH1 UBA/THIF-type NAD/FAD binding protein YP_006090848.1 937921 D 536056 CDS YP_006090849.1 386594449 12704453 complement(938778..939221) 1 NC_017625.1 TIGRFAM: cysteine desulfurase, sulfur acceptor subunit CsdE; PFAM: Fe-S metabolism associated SufE; KEGG: sdy:SDY_3029 hypothetical protein; cysteine desulfurase, sulfur acceptor subunit CsdE 939221 12704453 EcDH1_0877 Escherichia coli DH1 cysteine desulfurase, sulfur acceptor subunit CsdE YP_006090849.1 938778 R 536056 CDS YP_006090850.1 386594450 12704454 complement(939221..940426) 1 NC_017625.1 TIGRFAM: cysteine desulfurase, catalytic subunit CsdA; PFAM: aminotransferase class V; KEGG: ssn:SSON_2967 cysteine sulfinate desulfinase; cysteine desulfurase, catalytic subunit CsdA 940426 12704454 EcDH1_0878 Escherichia coli DH1 cysteine desulfurase, catalytic subunit CsdA YP_006090850.1 939221 R 536056 CDS YP_006090851.1 386594451 12704455 940618..940845 1 NC_017625.1 PFAM: protein of unknown function DUF903; KEGG: sdy:SDY_3027 hypothetical protein; hypothetical protein 940845 12704455 EcDH1_0879 Escherichia coli DH1 hypothetical protein YP_006090851.1 940618 D 536056 CDS YP_006090852.1 386594452 12704456 941196..942113 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E3062 glycine cleavage system transcriptional activator; LysR family transcriptional regulator 942113 12704456 EcDH1_0880 Escherichia coli DH1 LysR family transcriptional regulator YP_006090852.1 941196 D 536056 CDS YP_006090853.1 386594453 12704457 942132..942527 1 NC_017625.1 PFAM: protein of unknown function DUF423; KEGG: sdy:SDY_3025 hypothetical protein; hypothetical protein 942527 12704457 EcDH1_0881 Escherichia coli DH1 hypothetical protein YP_006090853.1 942132 D 536056 CDS YP_006090854.1 386594454 12704458 942520..943620 1 NC_017625.1 KEGG: sbc:SbBS512_E3064 hypothetical protein; hypothetical protein 943620 12704458 EcDH1_0882 Escherichia coli DH1 hypothetical protein YP_006090854.1 942520 D 536056 CDS YP_006090855.1 386594455 12704459 complement(943664..944395) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: ssn:SSON_2962 DNA-binding transcriptional activator; DeoR family transcriptional regulator 944395 12704459 EcDH1_0883 Escherichia coli DH1 DeoR family transcriptional regulator YP_006090855.1 943664 R 536056 CDS YP_006090856.1 386594456 12704460 complement(944453..944875) 1 NC_017625.1 PFAM: RbsD or FucU transport; KEGG: sdy:SDY_3022 protein of fucose operon; transport protein RbsD/FucU 944875 12704460 EcDH1_0884 Escherichia coli DH1 transport protein RbsD/FucU YP_006090856.1 944453 R 536056 CDS YP_006090857.1 386594457 12704461 complement(944877..946295) 1 NC_017625.1 TIGRFAM: L-fuculokinase; PFAM: carbohydrate kinase FGGY; KEGG: ssn:SSON_2960 L-fuculokinase; L-fuculokinase 946295 12704461 EcDH1_0885 Escherichia coli DH1 L-fuculokinase YP_006090857.1 944877 R 536056 CDS YP_006090858.1 386594458 12704462 complement(946404..948179) 1 NC_017625.1 KEGG: sfv:SFV_2881 L-fucose isomerase; TIGRFAM: L-fucose isomerase; PFAM: L-fucose isomerase _1 domain protein; L-fucose isomerase _2 domain protein; L-fucose isomerase-like-like; L-fucose isomerase 948179 12704462 EcDH1_0886 Escherichia coli DH1 L-fucose isomerase YP_006090858.1 946404 R 536056 CDS YP_006090859.1 386594459 12704463 complement(948212..949528) 1 NC_017625.1 TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_2880 L-fucose transporter; L-fucose transporter 949528 12704463 EcDH1_0887 Escherichia coli DH1 L-fucose transporter YP_006090859.1 948212 R 536056 CDS YP_006090860.1 386594460 12704464 950075..950722 1 NC_017625.1 TIGRFAM: L-fuculose phosphate aldolase; PFAM: class II aldolase/adducin family protein; KEGG: sdy:SDY_3017 L-fuculose phosphate aldolase; L-fuculose phosphate aldolase 950722 12704464 EcDH1_0888 Escherichia coli DH1 L-fuculose phosphate aldolase YP_006090860.1 950075 D 536056 CDS YP_006090861.1 386594461 12704465 950750..951898 1 NC_017625.1 TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: ssn:SSON_2956 L-1,2-propanediol oxidoreductase; lactaldehyde reductase 951898 12704465 EcDH1_0889 Escherichia coli DH1 lactaldehyde reductase YP_006090861.1 950750 D 536056 CDS YP_006090862.1 386594462 12704466 complement(951953..952708) 1 NC_017625.1 PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: sdy:SDY_3015 exonuclease IX; 5'-3' exonuclease 952708 12704466 EcDH1_0890 Escherichia coli DH1 5'-3' exonuclease YP_006090862.1 951953 R 536056 CDS YP_006090863.1 386594463 12704467 complement(952820..954187) 1 NC_017625.1 KEGG: sbc:SbBS512_E3075 L-serine ammonia-lyase 2; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 954187 12704467 EcDH1_0891 Escherichia coli DH1 L-serine dehydratase 1 YP_006090863.1 952820 R 536056 CDS YP_006090864.1 386594464 12704468 complement(954245..955534) 1 NC_017625.1 TIGRFAM: serine transporter; KEGG: sbo:SBO_2677 probable serine transporter; serine transporter 955534 12704468 EcDH1_0892 Escherichia coli DH1 serine transporter YP_006090864.1 954245 R 536056 CDS YP_006090865.1 386594465 12704469 complement(956091..957455) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbo:SBO_2676 hypothetical protein; hypothetical protein 957455 12704469 EcDH1_0893 Escherichia coli DH1 hypothetical protein YP_006090865.1 956091 R 536056 CDS YP_006090866.1 386594466 12704470 complement(957567..958415) 1 NC_017625.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; KEGG: sbc:SbBS512_E3078 queuine synthase; 7-cyano-7-deazaguanine reductase 958415 12704470 EcDH1_0894 Escherichia coli DH1 7-cyano-7-deazaguanine reductase YP_006090866.1 957567 R 536056 CDS YP_006090867.1 386594467 12704471 958483..959028 1 NC_017625.1 PFAM: Syd family protein; KEGG: sbo:SBO_2674 SecY interacting protein Syd; Syd family protein 959028 12704471 EcDH1_0895 Escherichia coli DH1 Syd family protein YP_006090867.1 958483 D 536056 CDS YP_006090868.1 386594468 12704472 959650..959979 1 NC_017625.1 PFAM: protein of unknown function DUF446; KEGG: sdy:SDY_3009 hypothetical protein; hypothetical protein 959979 12704472 EcDH1_0896 Escherichia coli DH1 hypothetical protein YP_006090868.1 959650 D 536056 CDS YP_006090869.1 386594469 12704473 959979..960761 1 NC_017625.1 PFAM: pseudouridine synthase; KEGG: sbc:SbBS512_E3081 tRNA pseudouridine synthase C; pseudouridine synthase 960761 12704473 EcDH1_0897 Escherichia coli DH1 pseudouridine synthase YP_006090869.1 959979 D 536056 CDS YP_006090870.1 386594470 12704474 960779..961228 1 NC_017625.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_3007 flavodoxin; flavodoxin/nitric oxide synthase 961228 12704474 EcDH1_0898 Escherichia coli DH1 flavodoxin/nitric oxide synthase YP_006090870.1 960779 D 536056 CDS YP_006090871.1 386594471 12704475 961663..963015 1 NC_017625.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2946 putative transport protein; d-galactonate transporter 963015 12704475 EcDH1_0899 Escherichia coli DH1 d-galactonate transporter YP_006090871.1 961663 D 536056 CDS YP_006090872.1 386594472 12704476 963017..964357 1 NC_017625.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ssn:SSON_2945 putative glucarate dehydratase; mandelate racemase/muconate lactonizing protein 964357 12704476 EcDH1_0900 Escherichia coli DH1 mandelate racemase/muconate lactonizing protein YP_006090872.1 963017 D 536056 CDS YP_006090873.1 386594473 12704477 964378..965718 1 NC_017625.1 KEGG: sfx:S2994 putative glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 965718 12704477 EcDH1_0901 Escherichia coli DH1 glucarate dehydratase YP_006090873.1 964378 D 536056 CDS YP_006090874.1 386594474 12704478 complement(965950..968706) 1 NC_017625.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sdy:SDY_3003 hybrid sensory histidine kinase BarA; Hpt sensor hybrid histidine kinase 968706 12704478 EcDH1_0902 Escherichia coli DH1 Hpt sensor hybrid histidine kinase YP_006090874.1 965950 R 536056 CDS YP_006090875.1 386594475 12704479 968763..970064 1 NC_017625.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sfx:S2992 23S rRNA 5-methyluridine methyltransferase; TrmA family RNA methyltransferase 970064 12704479 EcDH1_0903 Escherichia coli DH1 TrmA family RNA methyltransferase YP_006090875.1 968763 D 536056 CDS YP_006090876.1 386594476 12704480 970112..972346 1 NC_017625.1 KEGG: sdy:SDY_3001 GDP/GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 972346 12704480 EcDH1_0904 Escherichia coli DH1 (p)ppGpp synthetase I SpoT/RelA YP_006090876.1 970112 D 536056 CDS YP_006090877.1 386594477 12704481 972424..972672 1 NC_017625.1 PFAM: SpoVT/AbrB domain protein; KEGG: sdy:SDY_3000 antitoxin MazE; transcriptional regulator/antitoxin MazE 972672 12704481 EcDH1_0905 Escherichia coli DH1 transcriptional regulator/antitoxin MazE YP_006090877.1 972424 D 536056 CDS YP_006090878.1 386594478 12704482 972672..973007 1 NC_017625.1 PFAM: PemK family protein; KEGG: sdy:SDY_2999 toxin ChpA; transcriptional modulator of MazE/toxin MazF 973007 12704482 EcDH1_0906 Escherichia coli DH1 transcriptional modulator of MazE/toxin MazF YP_006090878.1 972672 D 536056 CDS YP_006090879.1 386594479 12704483 973078..973869 1 NC_017625.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sbc:SbBS512_E3092 MazG family protein; MazG family protein 973869 12704483 EcDH1_0907 Escherichia coli DH1 MazG family protein YP_006090879.1 973078 D 536056 CDS YP_006090880.1 386594480 12704484 974097..975734 1 NC_017625.1 KEGG: sdy:SDY_2997 CTP synthetase; TIGRFAM: CTP synthase; PFAM: glutamine amidotransferase class-I; CTP synthase-like; CTP synthase 975734 12704484 EcDH1_0908 Escherichia coli DH1 CTP synthase YP_006090880.1 974097 D 536056 CDS YP_006090881.1 386594481 12704485 975822..977120 1 NC_017625.1 PFAM: enolase; KEGG: sdy:SDY_2996 phosphopyruvate hydratase; Phosphopyruvate hydratase 977120 12704485 EcDH1_0909 Escherichia coli DH1 Phosphopyruvate hydratase YP_006090881.1 975822 D 536056 CDS YP_006090882.1 386594482 12704486 complement(977180..978052) 1 NC_017625.1 PFAM: protein of unknown function DUF477; KEGG: sfv:SFV_2677 hypothetical protein; hypothetical protein 978052 12704486 EcDH1_0910 Escherichia coli DH1 hypothetical protein YP_006090882.1 977180 R 536056 CDS YP_006090883.1 386594483 12704487 complement(978066..978206) 1 NC_017625.1 hypothetical protein 978206 12704487 EcDH1_0911 Escherichia coli DH1 hypothetical protein YP_006090883.1 978066 R 536056 CDS YP_006090884.1 386594484 12704488 978345..979016 1 NC_017625.1 KEGG: sdy:SDY_2981 hypothetical protein; hypothetical protein 979016 12704488 EcDH1_0912 Escherichia coli DH1 hypothetical protein YP_006090884.1 978345 D 536056 CDS YP_006090885.1 386594485 12704489 complement(980389..981867) 1 NC_017625.1 PFAM: carbohydrate kinase FGGY; KEGG: sdy:SDY_2978 putative kinase; carbohydrate kinase FGGY 981867 12704489 EcDH1_0913 Escherichia coli DH1 carbohydrate kinase FGGY YP_006090885.1 980389 R 536056 CDS YP_006090886.1 386594486 12704490 complement(981894..983171) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2927 putative transport protein; major facilitator superfamily protein 983171 12704490 EcDH1_0914 Escherichia coli DH1 major facilitator superfamily protein YP_006090886.1 981894 R 536056 CDS YP_006090887.1 386594487 12704491 983490..984275 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_2976 putative oxidoreductase; short-chain dehydrogenase/reductase SDR 984275 12704491 EcDH1_0915 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006090887.1 983490 D 536056 CDS YP_006090888.1 386594488 12704492 984345..985799 1 NC_017625.1 PFAM: FAD linked oxidase domain protein; KEGG: cko:CKO_04128 hypothetical protein; FAD linked oxidase domain-containing protein 985799 12704492 EcDH1_0916 Escherichia coli DH1 FAD linked oxidase domain-containing protein YP_006090888.1 984345 D 536056 CDS YP_006090889.1 386594489 12704493 985821..987230 1 NC_017625.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_2924 putative transport protein; major facilitator superfamily protein 987230 12704493 EcDH1_0917 Escherichia coli DH1 major facilitator superfamily protein YP_006090889.1 985821 D 536056 CDS YP_006090890.1 386594490 12704494 987208..987987 1 NC_017625.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ssn:SSON_2923 putative transport protein; electron transfer flavoprotein subunit alpha/beta 987987 12704494 EcDH1_0918 Escherichia coli DH1 electron transfer flavoprotein subunit alpha/beta YP_006090890.1 987208 D 536056 CDS YP_006090891.1 386594491 12704495 987984..988844 1 NC_017625.1 PFAM: Electron transfer flavoprotein alpha subunit; KEGG: ssn:SSON_2922 putative flavoprotein; electron transfer flavoprotein subunit alpha 988844 12704495 EcDH1_0919 Escherichia coli DH1 electron transfer flavoprotein subunit alpha YP_006090891.1 987984 D 536056 CDS YP_006090892.1 386594492 12704496 complement(988992..989567) 1 NC_017625.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: sdy:SDY_2970 putative anti-terminator regulatory protein; glycerol-3-phosphate responsive antiterminator GlpP 989567 12704496 EcDH1_0920 Escherichia coli DH1 glycerol-3-phosphate responsive antiterminator GlpP YP_006090892.1 988992 R 536056 CDS YP_006090893.1 386594493 12704497 complement(989584..989844) 1 NC_017625.1 KEGG: sdy:SDY_2969 hypothetical protein; hypothetical protein 989844 12704497 EcDH1_0921 Escherichia coli DH1 hypothetical protein YP_006090893.1 989584 R 536056 CDS YP_006090894.1 386594494 12704498 complement(989835..991106) 1 NC_017625.1 PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: ssn:SSON_2919 hypothetical protein; electron-transferring-flavoprotein dehydrogenase 991106 12704498 EcDH1_0922 Escherichia coli DH1 electron-transferring-flavoprotein dehydrogenase YP_006090894.1 989835 R 536056 CDS YP_006090895.1 386594495 12704499 complement(991184..991549) 1 NC_017625.1 KEGG: sbc:SbBS512_E3108 queuosine biosynthesis protein QueD; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase; queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; 6-pyruvoyl-tetrahydropterin synthase 991549 12704499 EcDH1_0923 Escherichia coli DH1 6-pyruvoyl-tetrahydropterin synthase YP_006090895.1 991184 R 536056 CDS YP_006090896.1 386594496 12704500 991865..993664 1 NC_017625.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: sbo:SBO_2647 sulfite reductase subunit alpha; sulfite reductase (NADPH) flavoprotein, alpha chain 993664 12704500 EcDH1_0924 Escherichia coli DH1 sulfite reductase (NADPH) flavoprotein, alpha chain YP_006090896.1 991865 D 536056 CDS YP_006090897.1 386594497 12704501 993664..995376 1 NC_017625.1 TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: sbc:SbBS512_E3112 sulfite reductase (NADPH) hemoprotein, beta-component; sulfite reductase (NADPH) hemoprotein subunit beta 995376 12704501 EcDH1_0925 Escherichia coli DH1 sulfite reductase (NADPH) hemoprotein subunit beta YP_006090897.1 993664 D 536056 CDS YP_006090898.1 386594498 12704502 995451..996185 1 NC_017625.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sbc:SbBS512_E3113 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 996185 12704502 EcDH1_0926 Escherichia coli DH1 phosphoadenosine phosphosulfate reductase YP_006090898.1 995451 D 536056 CDS YP_006090899.1 386594499 12704503 996544..999210 1 NC_017625.1 KEGG: gsu:GSU1384 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; CRISPR-associated helicase Cas3 999210 12704503 EcDH1_0927 Escherichia coli DH1 CRISPR-associated helicase Cas3 YP_006090899.1 996544 D 536056 CDS YP_006090900.1 386594500 12704504 999625..1001133 1 NC_017625.1 TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1; KEGG: gsu:GSU1385 hypothetical protein; Cse1 family CRISPR-associated protein 1001133 12704504 EcDH1_0928 Escherichia coli DH1 Cse1 family CRISPR-associated protein YP_006090900.1 999625 D 536056 CDS YP_006090901.1 386594501 12704505 1001126..1001608 1 NC_017625.1 TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2; KEGG: gsu:GSU1386 hypothetical protein; Cse2 family CRISPR-associated protein 1001608 12704505 EcDH1_0929 Escherichia coli DH1 Cse2 family CRISPR-associated protein YP_006090901.1 1001126 D 536056 CDS YP_006090902.1 386594502 12704506 1001621..1002712 1 NC_017625.1 TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; KEGG: gsu:GSU1387 CRISPR-associated CSE4 family protein; CRISPR-associated protein, Cse4 family 1002712 12704506 EcDH1_0930 Escherichia coli DH1 CRISPR-associated protein, Cse4 family YP_006090902.1 1001621 D 536056 CDS YP_006090903.1 386594503 12704507 1002715..1003389 1 NC_017625.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: gsu:GSU1388 CRISPR-associated Cas5e family protein; CRISPR-associated protein Cas5 family 1003389 12704507 EcDH1_0931 Escherichia coli DH1 CRISPR-associated protein Cas5 family YP_006090903.1 1002715 D 536056 CDS YP_006090904.1 386594504 12704508 1003376..1003975 1 NC_017625.1 TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: sdy:SDY_2955 hypothetical protein; CRISPR-associated protein, Cse3 family 1003975 12704508 EcDH1_0932 Escherichia coli DH1 CRISPR-associated protein, Cse3 family YP_006090904.1 1003376 D 536056 CDS YP_006090905.1 386594505 12704509 1003991..1004908 1 NC_017625.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: sew:SeSA_A3092 crispr-associated protein Cas1; CRISPR-associated protein Cas1 1004908 12704509 EcDH1_0933 Escherichia coli DH1 CRISPR-associated protein Cas1 YP_006090905.1 1003991 D 536056 CDS YP_006090906.1 386594506 12704510 1004910..1005194 1 NC_017625.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: sdy:SDY_2953 hypothetical protein; CRISPR-associated protein Cas2 1005194 12704510 EcDH1_0934 Escherichia coli DH1 CRISPR-associated protein Cas2 YP_006090906.1 1004910 D 536056 CDS YP_006090907.1 386594507 12704511 complement(1006145..1007182) 1 NC_017625.1 PFAM: peptidase M28; KEGG: sfx:S2969 alkaline phosphatase isozyme conversion aminopeptidase; peptidase M28 1007182 12704511 EcDH1_0935 Escherichia coli DH1 peptidase M28 YP_006090907.1 1006145 R 536056 CDS YP_006090908.1 386594508 12704512 1007434..1008342 1 NC_017625.1 TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: ssn:SSON_2900 sulfate adenylyltransferase subunit 2; sulfate adenylyltransferase, small subunit 1008342 12704512 EcDH1_0936 Escherichia coli DH1 sulfate adenylyltransferase, small subunit YP_006090908.1 1007434 D 536056 CDS YP_006090909.1 386594509 12704513 1008344..1009771 1 NC_017625.1 KEGG: ssn:SSON_2899 sulfate adenylyltransferase subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 1009771 12704513 EcDH1_0937 Escherichia coli DH1 sulfate adenylyltransferase, large subunit YP_006090909.1 1008344 D 536056 CDS YP_006090910.1 386594510 12704514 1009771..1010376 1 NC_017625.1 PFAM: adenylylsulfate kinase; KEGG: sdy:SDY_2949 adenylylsulfate kinase; Adenylyl-sulfate kinase 1010376 12704514 EcDH1_0938 Escherichia coli DH1 Adenylyl-sulfate kinase YP_006090910.1 1009771 D 536056 CDS YP_006090911.1 386594511 12704515 1010426..1010749 1 NC_017625.1 KEGG: sdy:SDY_2948 hypothetical protein; hypothetical protein 1010749 12704515 EcDH1_0939 Escherichia coli DH1 hypothetical protein YP_006090911.1 1010426 D 536056 CDS YP_006090912.1 386594512 12704516 1010943..1011254 1 NC_017625.1 PFAM: Septum formation initiator; KEGG: sdy:SDY_2947 cell divison protein FtsB; septum formation initiator 1011254 12704516 EcDH1_0940 Escherichia coli DH1 septum formation initiator YP_006090912.1 1010943 D 536056 CDS YP_006090913.1 386594513 12704517 1011273..1011983 1 NC_017625.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: sdy:SDY_2946 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1011983 12704517 EcDH1_0941 Escherichia coli DH1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_006090913.1 1011273 D 536056 CDS YP_006090914.1 386594514 12704518 1011983..1012462 1 NC_017625.1 KEGG: sdy:SDY_2945 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1012462 12704518 EcDH1_0942 Escherichia coli DH1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_006090914.1 1011983 D 536056 CDS YP_006090915.1 386594515 12704519 1012459..1013508 1 NC_017625.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: ssn:SSON_2893 tRNA pseudouridine synthase D; tRNA pseudouridine synthase D TruD 1013508 12704519 EcDH1_0943 Escherichia coli DH1 tRNA pseudouridine synthase D TruD YP_006090915.1 1012459 D 536056 CDS YP_006090916.1 386594516 12704520 1013489..1014250 1 NC_017625.1 KEGG: sbc:SbBS512_E3130 multifunctional protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 1014250 12704520 EcDH1_0944 Escherichia coli DH1 stationary-phase survival protein SurE YP_006090916.1 1013489 D 536056 CDS YP_006090917.1 386594517 12704521 1014244..1014870 1 NC_017625.1 KEGG: sdy:SDY_2942 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1014870 12704521 EcDH1_0945 Escherichia coli DH1 protein-L-isoaspartate O-methyltransferase YP_006090917.1 1014244 D 536056 CDS YP_006090918.1 386594518 12704522 1015010..1016149 1 NC_017625.1 PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: sdy:SDY_2941 predicted outer membrane lipoprotein; peptidase M23 1016149 12704522 EcDH1_0946 Escherichia coli DH1 peptidase M23 YP_006090918.1 1015010 D 536056 CDS YP_006090919.1 386594519 12704523 1016212..1017204 1 NC_017625.1 TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: ssn:SSON_2889 RNA polymerase sigma factor RpoS; RpoD subfamily RNA polymerase sigma-70 subunit 1017204 12704523 EcDH1_0947 Escherichia coli DH1 RpoD subfamily RNA polymerase sigma-70 subunit YP_006090919.1 1016212 D 536056 CDS YP_006090920.1 386594520 12704524 complement(1017298..1018662) 1 NC_017625.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: ssn:SSON_2888 inner membrane permease YgbN; gluconate transporter 1018662 12704524 EcDH1_0948 Escherichia coli DH1 gluconate transporter YP_006090920.1 1017298 R 536056 CDS YP_006090921.1 386594521 12704525 complement(1018751..1019527) 1 NC_017625.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sbc:SbBS512_E3135 AP endonuclease, family 2; Hydroxypyruvate isomerase 1019527 12704525 EcDH1_0949 Escherichia coli DH1 Hydroxypyruvate isomerase YP_006090921.1 1018751 R 536056 CDS YP_006090922.1 386594522 12704526 complement(1019532..1020170) 1 NC_017625.1 PFAM: class II aldolase/adducin family protein; KEGG: sbc:SbBS512_E3136 aldolase, class II, AraD/FucA family; class II aldolase/adducin family protein 1020170 12704526 EcDH1_0950 Escherichia coli DH1 class II aldolase/adducin family protein YP_006090922.1 1019532 R 536056 CDS YP_006090923.1 386594523 12704527 complement(1020262..1021428) 1 NC_017625.1 PFAM: type III effector Hrp-dependent outers; KEGG: ssn:SSON_2885 hypothetical protein; Hrp-dependent type III effector protein 1021428 12704527 EcDH1_0951 Escherichia coli DH1 Hrp-dependent type III effector protein YP_006090923.1 1020262 R 536056 CDS YP_006090924.1 386594524 12704528 complement(1021425..1022333) 1 NC_017625.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E3138 NAD binding domain of 6-phosphogluconate dehydrogenase; 2-hydroxy-3-oxopropionate reductase 1022333 12704528 EcDH1_0952 Escherichia coli DH1 2-hydroxy-3-oxopropionate reductase YP_006090924.1 1021425 R 536056 CDS YP_006090925.1 386594525 12704529 1022529..1023296 1 NC_017625.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sbo:SBO_2785 putative DeoR-type transcriptional regulator; DeoR family transcriptional regulator 1023296 12704529 EcDH1_0953 Escherichia coli DH1 DeoR family transcriptional regulator YP_006090925.1 1022529 D 536056 CDS YP_006090926.1 386594526 12704530 complement(1023347..1024003) 1 NC_017625.1 PFAM: metallophosphoesterase; KEGG: sbo:SBO_2786 serine/threonine-specific protein phosphatase 2; Phosphoprotein phosphatase 1024003 12704530 EcDH1_0954 Escherichia coli DH1 Phosphoprotein phosphatase YP_006090926.1 1023347 R 536056 CDS YP_006090927.1 386594527 12704531 complement(1024109..1026670) 1 NC_017625.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: sbc:SbBS512_E3143 DNA mismatch repair protein MutS; DNA mismatch repair protein MutS 1026670 12704531 EcDH1_0955 Escherichia coli DH1 DNA mismatch repair protein MutS YP_006090927.1 1024109 R 536056 CDS YP_006090928.1 386594528 12704532 1026746..1026880 1 NC_017625.1 hypothetical protein 1026880 12704532 EcDH1_0956 Escherichia coli DH1 hypothetical protein YP_006090928.1 1026746 D 536056 CDS YP_006090929.1 386594529 12704533 1026957..1027310 1 NC_017625.1 KEGG: sbc:SbBS512_E3145 hypothetical protein; hypothetical protein 1027310 12704533 EcDH1_0957 Escherichia coli DH1 hypothetical protein YP_006090929.1 1026957 D 536056 CDS YP_006090930.1 386594530 12704534 complement(1027347..1029425) 1 NC_017625.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sbo:SBO_2789 formate hydrogen-lyase transcriptional activator for FdhF, hyc and hyp operons; Fis family NifA subfamily transcriptional regulator 1029425 12704534 EcDH1_0958 Escherichia coli DH1 Fis family NifA subfamily transcriptional regulator YP_006090930.1 1027347 R 536056 CDS YP_006090931.1 386594531 12704535 complement(1029499..1030509) 1 NC_017625.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sbc:SbBS512_E3147 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 1030509 12704535 EcDH1_0959 Escherichia coli DH1 hydrogenase expression/formation protein HypE YP_006090931.1 1029499 R 536056 CDS YP_006090932.1 386594532 12704536 complement(1030506..1031627) 1 NC_017625.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: sbc:SbBS512_E3148 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 1031627 12704536 EcDH1_0960 Escherichia coli DH1 hydrogenase expression/formation protein HypD YP_006090932.1 1030506 R 536056 CDS YP_006090933.1 386594533 12704537 complement(1031627..1031899) 1 NC_017625.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: sdy:SDY_2925 hydrogenase isoenzymes formation protein; hydrogenase assembly chaperone HypC/HupF 1031899 12704537 EcDH1_0961 Escherichia coli DH1 hydrogenase assembly chaperone HypC/HupF YP_006090933.1 1031627 R 536056 CDS YP_006090934.1 386594534 12704538 complement(1031890..1032762) 1 NC_017625.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: sbc:SbBS512_E3150 hydrogenase isoenzymes nickel incorporation protein HypB; hydrogenase nickel incorporation protein HypB 1032762 12704538 EcDH1_0962 Escherichia coli DH1 hydrogenase nickel incorporation protein HypB YP_006090934.1 1031890 R 536056 CDS YP_006090935.1 386594535 12704539 complement(1032766..1033116) 1 NC_017625.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: ssn:SSON_2873 hydrogenase nickel incorporation protein; hydrogenase nickel incorporation protein HypA 1033116 12704539 EcDH1_0963 Escherichia coli DH1 hydrogenase nickel incorporation protein HypA YP_006090935.1 1032766 R 536056 CDS YP_006090936.1 386594536 12704540 1033328..1033789 1 NC_017625.1 KEGG: sfv:SFV_2778 formate hydrogenlyase regulatory protein HycA; formate hydrogenlyase regulatory protein HycA 1033789 12704540 EcDH1_0964 Escherichia coli DH1 formate hydrogenlyase regulatory protein HycA YP_006090936.1 1033328 D 536056 CDS YP_006090937.1 386594537 12704541 1033914..1034525 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2779 small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex); 4Fe-4S ferredoxin 1034525 12704541 EcDH1_0965 Escherichia coli DH1 4Fe-4S ferredoxin YP_006090937.1 1033914 D 536056 CDS YP_006090938.1 386594538 12704542 1034522..1036348 1 NC_017625.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ssn:SSON_2870 formate hydrogenlyase subunit 3; NADH dehydrogenase (quinone) 1036348 12704542 EcDH1_0966 Escherichia coli DH1 NADH dehydrogenase (quinone) YP_006090938.1 1034522 D 536056 CDS YP_006090939.1 386594539 12704543 1036351..1037274 1 NC_017625.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sbo:SBO_2796 membrane-spanning protein of hydrogenase 3; respiratory-chain NADH dehydrogenase subunit 1 1037274 12704543 EcDH1_0967 Escherichia coli DH1 respiratory-chain NADH dehydrogenase subunit 1 YP_006090939.1 1036351 D 536056 CDS YP_006090940.1 386594540 12704544 1037292..1039001 1 NC_017625.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sbo:SBO_2797 large subunit of hydrogenase 3; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1039001 12704544 EcDH1_0968 Escherichia coli DH1 NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_006090940.1 1037292 D 536056 CDS YP_006090941.1 386594541 12704545 1039011..1039553 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_2798 formate hydrogenlyase complex iron-sulfur subunit; 4Fe-4S ferredoxin 1039553 12704545 EcDH1_0969 Escherichia coli DH1 4Fe-4S ferredoxin YP_006090941.1 1039011 D 536056 CDS YP_006090942.1 386594542 12704546 1039553..1040320 1 NC_017625.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sfv:SFV_2784 hydrogenase activity; NADH ubiquinone oxidoreductase 20 kDa subunit 1040320 12704546 EcDH1_0970 Escherichia coli DH1 NADH ubiquinone oxidoreductase 20 kDa subunit YP_006090942.1 1039553 D 536056 CDS YP_006090943.1 386594543 12704547 1040317..1040727 1 NC_017625.1 PFAM: formate hydrogenlyase maturation HycH; KEGG: sbc:SbBS512_E3158 formate hydrogenlyase maturation protein; formate hydrogenlyase maturation HycH 1040727 12704547 EcDH1_0971 Escherichia coli DH1 formate hydrogenlyase maturation HycH YP_006090943.1 1040317 D 536056 CDS YP_006090944.1 386594544 12704548 1040720..1041190 1 NC_017625.1 TIGRFAM: hydrogenase maturation protease; hydrogenase maturation protease HycI; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sbc:SbBS512_E3159 hydrogenase maturation peptidase HycI; hydrogenase maturation protease HycI 1041190 12704548 EcDH1_0972 Escherichia coli DH1 hydrogenase maturation protease HycI YP_006090944.1 1040720 D 536056 CDS YP_006090945.1 386594545 12704549 complement(1041349..1042773) 1 NC_017625.1 PFAM: glycoside hydrolase family 1; KEGG: ssn:SSON_2860 cryptic 6-phospho-beta-glucosidase; glycoside hydrolase 1042773 12704549 EcDH1_0973 Escherichia coli DH1 glycoside hydrolase YP_006090945.1 1041349 R 536056 CDS YP_006090946.1 386594546 12704550 complement(1042782..1044239) 1 NC_017625.1 TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: ssn:SSON_2859 cellobiose/arbutin/salicin-specific PTS system components IIBC; PTS system maltose and glucose-specific transporter subunit IIC 1044239 12704550 EcDH1_0974 Escherichia coli DH1 PTS system maltose and glucose-specific transporter subunit IIC YP_006090946.1 1042782 R 536056 CDS YP_006090947.1 386594547 12704551 1044496..1045509 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_2858 ascBF operon repressor; LacI family transcriptional regulator 1045509 12704551 EcDH1_0975 Escherichia coli DH1 LacI family transcriptional regulator YP_006090947.1 1044496 D 536056 CDS YP_006090948.1 386594548 12704552 1045658..1046185 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E3164 4Fe-4S binding domain protein; 4Fe-4S ferredoxin 1046185 12704552 EcDH1_0976 Escherichia coli DH1 4Fe-4S ferredoxin YP_006090948.1 1045658 D 536056 CDS YP_006090949.1 386594549 12704553 1046338..1048590 1 NC_017625.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: ssn:SSON_2856 transcriptional regulatory protein; (NiFe) hydrogenase maturation protein HypF 1048590 12704553 EcDH1_0977 Escherichia coli DH1 (NiFe) hydrogenase maturation protein HypF YP_006090949.1 1046338 D 536056 CDS YP_006090950.1 386594550 12704554 complement(1048718..1049851) 1 NC_017625.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E3166 nitric oxide reductase FlRd-NAD(+) reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1049851 12704554 EcDH1_0978 Escherichia coli DH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_006090950.1 1048718 R 536056 CDS YP_006090951.1 386594551 12704555 complement(1049848..1051287) 1 NC_017625.1 PFAM: beta-lactamase domain protein; Rubredoxin-type Fe(Cys)4 protein; flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_2907 anaerobic nitric oxide reductase flavorubredoxin; beta-lactamase 1051287 12704555 EcDH1_0979 Escherichia coli DH1 beta-lactamase YP_006090951.1 1049848 R 536056 CDS YP_006090952.1 386594552 12704556 1051474..1052988 1 NC_017625.1 PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; SMART: AAA ATPase; KEGG: sfv:SFV_2796 anaerobic nitric oxide reductase transcription regulator; sigma-54 interacting domain-containing protein 1052988 12704556 EcDH1_0980 Escherichia coli DH1 sigma-54 interacting domain-containing protein YP_006090952.1 1051474 D 536056 CDS YP_006090953.1 386594553 12704557 complement(1052985..1053950) 1 NC_017625.1 KEGG: sbo:SBO_2810 D-arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1053950 12704557 EcDH1_0981 Escherichia coli DH1 KpsF/GutQ family protein YP_006090953.1 1052985 R 536056 CDS YP_006090954.1 386594554 12704558 complement(1053943..1054716) 1 NC_017625.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sfv:SFV_2798 DNA-bindng transcriptional repressor SrlR; DeoR family transcriptional regulator 1054716 12704558 EcDH1_0982 Escherichia coli DH1 DeoR family transcriptional regulator YP_006090954.1 1053943 R 536056 CDS YP_006090955.1 386594555 12704559 complement(1054783..1055142) 1 NC_017625.1 PFAM: Glucitol operon activator; KEGG: sbc:SbBS512_E3171 glucitol operon activator protein; glucitol operon activator 1055142 12704559 EcDH1_0983 Escherichia coli DH1 glucitol operon activator YP_006090955.1 1054783 R 536056 CDS YP_006090956.1 386594556 12704560 complement(1055247..1056026) 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_2902 sorbitol-6-phosphate dehydrogenase; short-chain dehydrogenase/reductase SDR 1056026 12704560 EcDH1_0984 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006090956.1 1055247 R 536056 CDS YP_006090957.1 386594557 12704561 complement(1056030..1056401) 1 NC_017625.1 TIGRFAM: PTS system, glucitol/sorbitol-specific IIA subunit; PFAM: PTS system glucitol/sorbitol-specific IIA component; KEGG: sfv:SFV_2801 glucitol/sorbitol-specific PTS system component IIA; PTS system glucitol/sorbitol-specific transporter subunit IIA 1056401 12704561 EcDH1_0985 Escherichia coli DH1 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_006090957.1 1056030 R 536056 CDS YP_006090958.1 386594558 12704562 complement(1056412..1057371) 1 NC_017625.1 KEGG: sbc:SbBS512_E3174 PTS system, glucitol/sorbitol-specific, IIB component; TIGRFAM: PTS system, glucitol/sorbitol-specific, IIBC subunit; PFAM: Sorbitol phosphotransferase protein II domain protein; PTS system glucitol/sorbitol-specific transporter subunit IIBC 1057371 12704562 EcDH1_0986 Escherichia coli DH1 PTS system glucitol/sorbitol-specific transporter subunit IIBC YP_006090958.1 1056412 R 536056 CDS YP_006090959.1 386594559 12704563 complement(1057368..1057931) 1 NC_017625.1 TIGRFAM: PTS system, glucitol/sorbitol-specific, IIC subunit; PFAM: PTS system protein II sorbitol-specific factor; KEGG: sdy:SDY_2898 PTS system, glucitol/sorbitol-specific IIC component; PTS system glucitol/sorbitol-specific transporter subunit IIC 1057931 12704563 EcDH1_0987 Escherichia coli DH1 PTS system glucitol/sorbitol-specific transporter subunit IIC YP_006090959.1 1057368 R 536056 CDS YP_006090960.1 386594560 12704564 1058187..1059272 1 NC_017625.1 TIGRFAM: lytic murein transglycosylase B; KEGG: sfv:SFV_2804 murein hydrolase B; lytic murein transglycosylase B 1059272 12704564 EcDH1_0988 Escherichia coli DH1 lytic murein transglycosylase B YP_006090960.1 1058187 D 536056 CDS YP_006090961.1 386594561 12704565 1059417..1059914 1 NC_017625.1 PFAM: CinA domain protein; KEGG: ssn:SSON_2844 competence damage-inducible protein A; CinA domain-containing protein 1059914 12704565 EcDH1_0989 Escherichia coli DH1 CinA domain-containing protein YP_006090961.1 1059417 D 536056 CDS YP_006090962.1 386594562 12704566 1059994..1061055 1 NC_017625.1 KEGG: sdy:SDY_2895 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 1061055 12704566 EcDH1_0990 Escherichia coli DH1 recA protein YP_006090962.1 1059994 D 536056 CDS YP_006090963.1 386594563 12704567 1061124..1061624 1 NC_017625.1 PFAM: regulatory protein RecX; KEGG: sfv:SFV_2807 recombination regulator RecX; regulatory protein RecX 1061624 12704567 EcDH1_0991 Escherichia coli DH1 regulatory protein RecX YP_006090963.1 1061124 D 536056 CDS YP_006090964.1 386594564 12704568 1061752..1064382 1 NC_017625.1 KEGG: ssn:SSON_2841 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 1064382 12704568 EcDH1_0992 Escherichia coli DH1 alanyl-tRNA synthetase YP_006090964.1 1061752 D 536056 CDS YP_006090965.1 386594565 12704569 1064617..1064802 1 NC_017625.1 PFAM: carbon storage regulator; KEGG: kpe:KPK_1099 carbon storage regulator; carbon storage regulator CsrA 1064802 12704569 EcDH1_0993 Escherichia coli DH1 carbon storage regulator CsrA YP_006090965.1 1064617 D 536056 CDS YP_006090966.1 386594566 12704575 1066260..1066826 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_2834 predicted hydrolase; beta-phosphoglucomutase family hydrolase 1066826 12704575 EcDH1_0994 Escherichia coli DH1 beta-phosphoglucomutase family hydrolase YP_006090966.1 1066260 D 536056 CDS YP_006090967.1 386594567 12704576 1066823..1067251 1 NC_017625.1 KEGG: sfv:SFV_2815 hypothetical protein; hypothetical protein 1067251 12704576 EcDH1_0995 Escherichia coli DH1 hypothetical protein YP_006090967.1 1066823 D 536056 CDS YP_006090968.1 386594568 12704577 1067324..1068880 1 NC_017625.1 KEGG: sdy:SDY_2885 glutamate--cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase 1068880 12704577 EcDH1_0996 Escherichia coli DH1 glutamate/cysteine ligase YP_006090968.1 1067324 D 536056 CDS YP_006090969.1 386594569 12704579 complement(1069608..1071146) 1 NC_017625.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2830 probably membrane translocase; EmrB/QacA subfamily drug resistance transporter 1071146 12704579 EcDH1_0998 Escherichia coli DH1 EmrB/QacA subfamily drug resistance transporter YP_006090969.1 1069608 R 536056 CDS YP_006090970.1 386594570 12704580 complement(1071163..1072335) 1 NC_017625.1 TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: sbo:SBO_2832 multidrug resistance secretion protein; efflux pump membrane protein 1072335 12704580 EcDH1_0999 Escherichia coli DH1 efflux pump membrane protein YP_006090970.1 1071163 R 536056 CDS YP_006090971.1 386594571 12704581 complement(1072462..1072992) 1 NC_017625.1 PFAM: regulatory protein MarR; KEGG: sbc:SbBS512_E3192 transcriptional repressor MprA; MarR family transcriptional regulator 1072992 12704581 EcDH1_1000 Escherichia coli DH1 MarR family transcriptional regulator YP_006090971.1 1072462 R 536056 CDS YP_006090972.1 386594572 12704582 complement(1073083..1073418) 1 NC_017625.1 KEGG: sbc:SbBS512_E3193 hypothetical protein; hypothetical protein 1073418 12704582 EcDH1_1001 Escherichia coli DH1 hypothetical protein YP_006090972.1 1073083 R 536056 CDS YP_006090973.1 386594573 12704583 complement(1073408..1074145) 1 NC_017625.1 PFAM: AzlC family protein; KEGG: ssn:SSON_2826 hypothetical protein; AzlC family protein 1074145 12704583 EcDH1_1002 Escherichia coli DH1 AzlC family protein YP_006090973.1 1073408 R 536056 CDS YP_006090974.1 386594574 12704585 complement(1075638..1076630) 1 NC_017625.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sbc:SbBS512_E3200 glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein; glycine betaine ABC transporter substrate-binding protein 1076630 12704585 EcDH1_1004 Escherichia coli DH1 glycine betaine ABC transporter substrate-binding protein YP_006090974.1 1075638 R 536056 CDS YP_006090975.1 386594575 12704586 complement(1076688..1077752) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_2823 glycine betaine transporter membrane protein; binding-protein-dependent transport system inner membrane protein 1077752 12704586 EcDH1_1005 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006090975.1 1076688 R 536056 CDS YP_006090976.1 386594576 12704587 complement(1077745..1078947) 1 NC_017625.1 KEGG: sbc:SbBS512_E3202 glycine betaine/L-proline ABC transporter, ATP binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 1078947 12704587 EcDH1_1006 Escherichia coli DH1 glycine betaine/L-proline ABC transporter ATPase YP_006090976.1 1077745 R 536056 CDS YP_006090977.1 386594577 12704588 complement(1079301..1080260) 1 NC_017625.1 PFAM: ribonucleotide reductase; KEGG: ssn:SSON_2821 ribonucleotide-diphosphate reductase subunit beta; ribonucleoside-diphosphate reductase 1080260 12704588 EcDH1_1007 Escherichia coli DH1 ribonucleoside-diphosphate reductase YP_006090977.1 1079301 R 536056 CDS YP_006090978.1 386594578 12704589 complement(1080270..1082375) 1 NC_017625.1 KEGG: sbc:SbBS512_E3204 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; Ribonucleotide reductase domain protein; ribonucleoside-diphosphate reductase subunit alpha 1082375 12704589 EcDH1_1008 Escherichia coli DH1 ribonucleoside-diphosphate reductase subunit alpha YP_006090978.1 1080270 R 536056 CDS YP_006090979.1 386594579 12704590 complement(1082387..1082797) 1 NC_017625.1 TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: sbc:SbBS512_E3205 NrdI protein; NrdI protein 1082797 12704590 EcDH1_1009 Escherichia coli DH1 NrdI protein YP_006090979.1 1082387 R 536056 CDS YP_006090980.1 386594580 12704591 complement(1082794..1083039) 1 NC_017625.1 TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: sbo:SBO_2844 glutaredoxin-like protein; glutaredoxin-like protein NrdH 1083039 12704591 EcDH1_1010 Escherichia coli DH1 glutaredoxin-like protein NrdH YP_006090980.1 1082794 R 536056 CDS YP_006090981.1 386594581 12704592 complement(1083287..1083616) 1 NC_017625.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_2863 hypothetical protein; hypothetical protein 1083616 12704592 EcDH1_1011 Escherichia coli DH1 hypothetical protein YP_006090981.1 1083287 R 536056 CDS YP_006090982.1 386594582 12704593 1083768..1084112 1 NC_017625.1 KEGG: sbc:SbBS512_E3210 hypothetical protein; hypothetical protein 1084112 12704593 EcDH1_1012 Escherichia coli DH1 hypothetical protein YP_006090982.1 1083768 D 536056 CDS YP_006090983.1 386594583 12704594 complement(1084149..1084598) 1 NC_017625.1 PFAM: protein of unknown function DUF1144; KEGG: sbc:SbBS512_E3211 hypothetical protein; hypothetical protein 1084598 12704594 EcDH1_1013 Escherichia coli DH1 hypothetical protein YP_006090983.1 1084149 R 536056 CDS YP_006090984.1 386594584 12704595 1085267..1085671 1 NC_017625.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sdy:SDY_2859 DNA binding protein, nucleoid-associated; histone family protein nucleoid-structuring protein H-NS 1085671 12704595 EcDH1_1014 Escherichia coli DH1 histone family protein nucleoid-structuring protein H-NS YP_006090984.1 1085267 D 536056 CDS YP_006090985.1 386594585 12704596 complement(1085718..1086242) 1 NC_017625.1 SMART: Rhodanese domain protein; KEGG: sbc:SbBS512_E3213 putative inner membrane protein; Rhodanese domain-containing protein 1086242 12704596 EcDH1_1015 Escherichia coli DH1 Rhodanese domain-containing protein YP_006090985.1 1085718 R 536056 CDS YP_006090986.1 386594586 12704597 complement(1086252..1086551) 1 NC_017625.1 PFAM: regulatory protein ArsR; KEGG: sbo:SBO_2852 hypothetical protein; ArsR family transcriptional regulator 1086551 12704597 EcDH1_1016 Escherichia coli DH1 ArsR family transcriptional regulator YP_006090986.1 1086252 R 536056 CDS YP_006090987.1 386594587 12704598 1086734..1086892 1 NC_017625.1 PFAM: protein of unknown function UPF0057; KEGG: sdy:SDY_2856 hypothetical protein; hypothetical protein 1086892 12704598 EcDH1_1017 Escherichia coli DH1 hypothetical protein YP_006090987.1 1086734 D 536056 CDS YP_006090988.1 386594588 12704599 1086976..1087425 1 NC_017625.1 PFAM: Peptidoglycan-binding LysM; transport-associated; SMART: Transport-associated and nodulation region; KEGG: sdy:SDY_2855 hypothetical protein; Peptidoglycan-binding LysM 1087425 12704599 EcDH1_1018 Escherichia coli DH1 Peptidoglycan-binding LysM YP_006090988.1 1086976 D 536056 CDS YP_006090989.1 386594589 12704600 complement(1087426..1088088) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sdy:SDY_2854 DNA-binding transcriptional regulator CsiR; GntR family transcriptional regulator 1088088 12704600 EcDH1_1019 Escherichia coli DH1 GntR family transcriptional regulator YP_006090989.1 1087426 R 536056 CDS YP_006090990.1 386594590 12704601 complement(1088109..1089509) 1 NC_017625.1 TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2853 gamma-aminobutyrate transporter; GABA permease 1089509 12704601 EcDH1_1020 Escherichia coli DH1 GABA permease YP_006090990.1 1088109 R 536056 CDS YP_006090991.1 386594591 12704602 complement(1089747..1091027) 1 NC_017625.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: ssn:SSON_2806 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 1091027 12704602 EcDH1_1021 Escherichia coli DH1 4-aminobutyrate aminotransferase YP_006090991.1 1089747 R 536056 CDS YP_006090992.1 386594592 12704603 complement(1091041..1092489) 1 NC_017625.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ssn:SSON_2805 succinate-semialdehyde dehydrogenase I; succinate-semialdehyde dehydrogenase 1092489 12704603 EcDH1_1022 Escherichia coli DH1 succinate-semialdehyde dehydrogenase YP_006090992.1 1091041 R 536056 CDS YP_006090993.1 386594593 12704604 complement(1092512..1093780) 1 NC_017625.1 PFAM: FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E3221 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1093780 12704604 EcDH1_1023 Escherichia coli DH1 FAD dependent oxidoreductase YP_006090993.1 1092512 R 536056 CDS YP_006090994.1 386594594 12704605 complement(1093800..1094777) 1 NC_017625.1 PFAM: Protein of unknown function CsiD; KEGG: ssn:SSON_2803 hypothetical protein; hypothetical protein 1094777 12704605 EcDH1_1024 Escherichia coli DH1 hypothetical protein YP_006090994.1 1093800 R 536056 CDS YP_006090995.1 386594595 12704609 1101036..1105616 1 NC_017625.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sdy:SDY_1204 putative ATP-binding component of a transport system; outer membrane autotransporter barrel domain-containing protein 1105616 12704609 EcDH1_1028 Escherichia coli DH1 outer membrane autotransporter barrel domain-containing protein YP_006090995.1 1101036 D 536056 CDS YP_006090996.1 386594596 12704610 complement(1105980..1106309) 1 NC_017625.1 PFAM: protein of unknown function DUF1219; KEGG: eca:ECA2853 hypothetical protein; hypothetical protein 1106309 12704610 EcDH1_1029 Escherichia coli DH1 hypothetical protein YP_006090996.1 1105980 R 536056 CDS YP_006090997.1 386594597 12704611 complement(1106330..1106647) 1 NC_017625.1 PFAM: YagBYeeUYfjZ family protein; KEGG: plu:plu0134 hypothetical protein; YagBYeeUYfjZ family protein 1106647 12704611 EcDH1_1030 Escherichia coli DH1 YagBYeeUYfjZ family protein YP_006090997.1 1106330 R 536056 CDS YP_006090998.1 386594598 12704612 complement(1106685..1106885) 1 NC_017625.1 PFAM: protein of unknown function DUF987; KEGG: seg:SG0269 hypothetical protein; hypothetical protein 1106885 12704612 EcDH1_1031 Escherichia coli DH1 hypothetical protein YP_006090998.1 1106685 R 536056 CDS YP_006090999.1 386594599 12704613 complement(1106894..1107376) 1 NC_017625.1 PFAM: DNA repair protein RadC; KEGG: seh:SeHA_C4680 DNA repair protein, RADC family; DNA repair protein RadC 1107376 12704613 EcDH1_1032 Escherichia coli DH1 DNA repair protein RadC YP_006090999.1 1106894 R 536056 CDS YP_006091000.1 386594600 12704614 complement(1107385..1107843) 1 NC_017625.1 PFAM: Antirestriction protein; KEGG: seh:SeHA_C4681 antirestriction protein; antirestriction protein 1107843 12704614 EcDH1_1033 Escherichia coli DH1 antirestriction protein YP_006091000.1 1107385 R 536056 CDS YP_006091001.1 386594601 12704616 complement(1108741..1110444) 1 NC_017625.1 KEGG: msu:MS0518 CcmC protein; hypothetical protein 1110444 12704616 EcDH1_1035 Escherichia coli DH1 hypothetical protein YP_006091001.1 1108741 R 536056 CDS YP_006091002.1 386594602 12704618 1111608..1111922 1 NC_017625.1 KEGG: ent:Ent638_4257 arsenate reductase; glutaredoxin family-like arsenate reductase 1111922 12704618 EcDH1_1037 Escherichia coli DH1 glutaredoxin family-like arsenate reductase YP_006091002.1 1111608 D 536056 CDS YP_006091003.1 386594603 12704619 complement(1112147..1112614) 1 NC_017625.1 KEGG: kpe:KPK_4947 hypothetical protein; hypothetical protein 1112614 12704619 EcDH1_1038 Escherichia coli DH1 hypothetical protein YP_006091003.1 1112147 R 536056 CDS YP_006091004.1 386594604 12704620 complement(1112638..1113081) 1 NC_017625.1 KEGG: seg:SG0280 hypothetical protein; hypothetical protein 1113081 12704620 EcDH1_1039 Escherichia coli DH1 hypothetical protein YP_006091004.1 1112638 R 536056 CDS YP_006091005.1 386594605 12704621 complement(1113081..1113317) 1 NC_017625.1 hypothetical protein 1113317 12704621 EcDH1_1040 Escherichia coli DH1 hypothetical protein YP_006091005.1 1113081 R 536056 CDS YP_006091006.1 386594606 12704622 complement(1113358..1114059) 1 NC_017625.1 KEGG: kpe:KPK_4949 putative transcriptional regulator; putative transcriptional regulator 1114059 12704622 EcDH1_1041 Escherichia coli DH1 putative transcriptional regulator YP_006091006.1 1113358 R 536056 CDS YP_006091007.1 386594607 12704623 complement(1114276..1115097) 1 NC_017625.1 PFAM: protein of unknown function DUF932; KEGG: ypy:YPK_3134 hypothetical protein; hypothetical protein 1115097 12704623 EcDH1_1042 Escherichia coli DH1 hypothetical protein YP_006091007.1 1114276 R 536056 CDS YP_006091008.1 386594608 12704624 complement(1115189..1116052) 1 NC_017625.1 PFAM: GTP-binding protein HSR1-related; KEGG: spq:SPAB_03326 hypothetical protein; GTP-binding protein HSR1-like protein 1116052 12704624 EcDH1_1043 Escherichia coli DH1 GTP-binding protein HSR1-like protein YP_006091008.1 1115189 R 536056 CDS YP_006091009.1 386594609 12704625 complement(1116407..1116778) 1 NC_017625.1 KEGG: spl:Spea_1277 hypothetical protein; hypothetical protein 1116778 12704625 EcDH1_1044 Escherichia coli DH1 hypothetical protein YP_006091009.1 1116407 R 536056 CDS YP_006091010.1 386594610 12704626 complement(1116771..1117844) 1 NC_017625.1 KEGG: spl:Spea_1276 hypothetical protein; hypothetical protein 1117844 12704626 EcDH1_1045 Escherichia coli DH1 hypothetical protein YP_006091010.1 1116771 R 536056 CDS YP_006091011.1 386594611 12704628 1118609..1120225 1 NC_017625.1 PFAM: Domain of unknown function DUF1837; KEGG: she:Shewmr4_3327 hypothetical protein; hypothetical protein 1120225 12704628 EcDH1_1047 Escherichia coli DH1 hypothetical protein YP_006091011.1 1118609 D 536056 CDS YP_006091012.1 386594612 12704629 1120222..1122411 1 NC_017625.1 PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: she:Shewmr4_3328 DEAD/DEAH box helicase domain-containing protein; helicase domain-containing protein 1122411 12704629 EcDH1_1048 Escherichia coli DH1 helicase domain-containing protein YP_006091012.1 1120222 D 536056 CDS YP_006091013.1 386594613 12704630 complement(1122589..1123215) 1 NC_017625.1 KEGG: shm:Shewmr7_1767 hypothetical protein; hypothetical protein 1123215 12704630 EcDH1_1049 Escherichia coli DH1 hypothetical protein YP_006091013.1 1122589 R 536056 CDS YP_006091014.1 386594614 12704631 complement(1123368..1124777) 1 NC_017625.1 KEGG: spe:Spro_1780 hypothetical protein; hypothetical protein 1124777 12704631 EcDH1_1050 Escherichia coli DH1 hypothetical protein YP_006091014.1 1123368 R 536056 CDS YP_006091015.1 386594615 12704632 complement(1124906..1125118) 1 NC_017625.1 PFAM: Prophage CP4-57 regulatory; KEGG: ypb:YPTS_1206 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 1125118 12704632 EcDH1_1051 Escherichia coli DH1 phage transcriptional regulator AlpA YP_006091015.1 1124906 R 536056 CDS YP_006091016.1 386594616 12704633 1125162..1126118 1 NC_017625.1 KEGG: ypb:YPTS_1205 hypothetical protein; hypothetical protein 1126118 12704633 EcDH1_1052 Escherichia coli DH1 hypothetical protein YP_006091016.1 1125162 D 536056 CDS YP_006091017.1 386594617 12704634 complement(1126362..1127603) 1 NC_017625.1 PFAM: integrase family protein; KEGG: ypb:YPTS_1211 integrase family protein; integrase family protein 1127603 12704634 EcDH1_1053 Escherichia coli DH1 integrase family protein YP_006091017.1 1126362 R 536056 CDS YP_006091018.1 386594618 12704636 complement(1128384..1128866) 1 NC_017625.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: sdy:SDY_2793 SsrA-binding protein; SsrA-binding protein 1128866 12704636 EcDH1_1055 Escherichia coli DH1 SsrA-binding protein YP_006091018.1 1128384 R 536056 CDS YP_006091019.1 386594619 12704637 1128998..1129474 1 NC_017625.1 PFAM: cyclase/dehydrase; KEGG: sdy:SDY_2792 hypothetical protein; cyclase/dehydrase 1129474 12704637 EcDH1_1056 Escherichia coli DH1 cyclase/dehydrase YP_006091019.1 1128998 D 536056 CDS YP_006091020.1 386594620 12704638 1129464..1129754 1 NC_017625.1 PFAM: protein of unknown function UPF0125; KEGG: sbc:SbBS512_E3007 RnfH family protein; hypothetical protein 1129754 12704638 EcDH1_1057 Escherichia coli DH1 hypothetical protein YP_006091020.1 1129464 D 536056 CDS YP_006091021.1 386594621 12704639 complement(1129816..1130157) 1 NC_017625.1 PFAM: SmpA/OmlA domain protein; KEGG: sdy:SDY_2790 hypothetical protein; SmpA/OmlA domain-containing protein 1130157 12704639 EcDH1_1058 Escherichia coli DH1 SmpA/OmlA domain-containing protein YP_006091021.1 1129816 R 536056 CDS YP_006091022.1 386594622 12704640 complement(1130306..1131967) 1 NC_017625.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: ssn:SSON_2772 recombination and repair protein; DNA repair protein RecN 1131967 12704640 EcDH1_1059 Escherichia coli DH1 DNA repair protein RecN YP_006091022.1 1130306 R 536056 CDS YP_006091023.1 386594623 12704641 complement(1132053..1132931) 1 NC_017625.1 PFAM: ATP-NAD/AcoX kinase; KEGG: sbc:SbBS512_E3004 NAD(+) kinase; ATP-NAD/AcoX kinase 1132931 12704641 EcDH1_1060 Escherichia coli DH1 ATP-NAD/AcoX kinase YP_006091023.1 1132053 R 536056 CDS YP_006091024.1 386594624 12704642 1133054..1133647 1 NC_017625.1 PFAM: GrpE protein; KEGG: sdy:SDY_2787 heat shock protein GrpE; Ribulose-phosphate 3-epimerase 1133647 12704642 EcDH1_1061 Escherichia coli DH1 Ribulose-phosphate 3-epimerase YP_006091024.1 1133054 D 536056 CDS YP_006091025.1 386594625 12704643 complement(1133702..1134943) 1 NC_017625.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sbc:SbBS512_E3001 CBS/transporter associated domain protein; hypothetical protein 1134943 12704643 EcDH1_1062 Escherichia coli DH1 hypothetical protein YP_006091025.1 1133702 R 536056 CDS YP_006091026.1 386594626 12704644 complement(1135009..1135875) 1 NC_017625.1 PFAM: cytochrome c assembly protein; KEGG: sdy:SDY_2785 hypothetical protein; cytochrome c assembly protein 1135875 12704644 EcDH1_1063 Escherichia coli DH1 cytochrome c assembly protein YP_006091026.1 1135009 R 536056 CDS YP_006091027.1 386594627 12704645 1135967..1137328 1 NC_017625.1 KEGG: sbc:SbBS512_E2999 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1137328 12704645 EcDH1_1064 Escherichia coli DH1 signal recognition particle protein YP_006091027.1 1135967 D 536056 CDS YP_006091028.1 386594628 12704646 1137577..1137825 1 NC_017625.1 PFAM: ribosomal protein S16; KEGG: sdy:SDY_2783 30S ribosomal protein S16; 30S ribosomal protein S16 1137825 12704646 EcDH1_1065 Escherichia coli DH1 30S ribosomal protein S16 YP_006091028.1 1137577 D 536056 CDS YP_006091029.1 386594629 12704647 1137844..1138392 1 NC_017625.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: sdy:SDY_2782 16S rRNA-processing protein; 16S rRNA processing protein RimM 1138392 12704647 EcDH1_1066 Escherichia coli DH1 16S rRNA processing protein RimM YP_006091029.1 1137844 D 536056 CDS YP_006091030.1 386594630 12704648 1138423..1139190 1 NC_017625.1 KEGG: sdy:SDY_2781 tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 1139190 12704648 EcDH1_1067 Escherichia coli DH1 tRNA (guanine-N1)-methyltransferase YP_006091030.1 1138423 D 536056 CDS YP_006091031.1 386594631 12704649 1139232..1139579 1 NC_017625.1 PFAM: ribosomal protein L19; KEGG: sdy:SDY_2780 50S ribosomal protein L19; 50S ribosomal protein L19 1139579 12704649 EcDH1_1068 Escherichia coli DH1 50S ribosomal protein L19 YP_006091031.1 1139232 D 536056 CDS YP_006091032.1 386594632 12704650 complement(1139655..1140137) 1 NC_017625.1 PFAM: OmpA/MotB domain protein; KEGG: sbo:SBO_2741 predicted outer membrane lipoprotein; OmpA/MotB domain-containing protein 1140137 12704650 EcDH1_1069 Escherichia coli DH1 OmpA/MotB domain-containing protein YP_006091032.1 1139655 R 536056 CDS YP_006091033.1 386594633 12704651 complement(1140153..1141376) 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_2761 hypothetical protein; diguanylate cyclase 1141376 12704651 EcDH1_1070 Escherichia coli DH1 diguanylate cyclase YP_006091033.1 1140153 R 536056 CDS YP_006091034.1 386594634 12704652 complement(1141369..1141887) 1 NC_017625.1 KEGG: sbc:SbBS512_E2990 hypothetical protein; hypothetical protein 1141887 12704652 EcDH1_1071 Escherichia coli DH1 hypothetical protein YP_006091034.1 1141369 R 536056 CDS YP_006091035.1 386594635 12704653 complement(1142037..1142402) 1 NC_017625.1 KEGG: sfv:SFV_2869 hypothetical protein; hypothetical protein 1142402 12704653 EcDH1_1072 Escherichia coli DH1 hypothetical protein YP_006091035.1 1142037 R 536056 CDS YP_006091036.1 386594636 12704654 1142612..1143682 1 NC_017625.1 KEGG: sdy:SDY_2765 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 1143682 12704654 EcDH1_1073 Escherichia coli DH1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_006091036.1 1142612 D 536056 CDS YP_006091037.1 386594637 12704655 1143693..1144814 1 NC_017625.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: sbc:SbBS512_E2987 T-protein; chorismate mutase 1144814 12704655 EcDH1_1074 Escherichia coli DH1 chorismate mutase YP_006091037.1 1143693 D 536056 CDS YP_006091038.1 386594638 12704656 complement(1144857..1146017) 1 NC_017625.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: sfv:SFV_2872 bifunctional chorismate mutase/prephenate dehydratase; chorismate mutase 1146017 12704656 EcDH1_1075 Escherichia coli DH1 chorismate mutase YP_006091038.1 1144857 R 536056 CDS YP_006091039.1 386594639 12704657 complement(1146267..1146608) 1 NC_017625.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sdy:SDY_2768 translation inhibitor protein RaiA; sigma 54 modulation protein/ribosomal protein S30EA 1146608 12704657 EcDH1_1076 Escherichia coli DH1 sigma 54 modulation protein/ribosomal protein S30EA YP_006091039.1 1146267 R 536056 CDS YP_006091040.1 386594640 12704658 complement(1146879..1147616) 1 NC_017625.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: sbc:SbBS512_E2976 outer membrane assembly lipoprotein YfiO; outer membrane assembly lipoprotein YfiO 1147616 12704658 EcDH1_1077 Escherichia coli DH1 outer membrane assembly lipoprotein YfiO YP_006091040.1 1146879 R 536056 CDS YP_006091041.1 386594641 12704659 1147751..1148731 1 NC_017625.1 KEGG: ssn:SSON_2720 23S rRNA pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1148731 12704659 EcDH1_1078 Escherichia coli DH1 RluA family pseudouridine synthase YP_006091041.1 1147751 D 536056 CDS YP_006091042.1 386594642 12704660 1148728..1149459 1 NC_017625.1 PFAM: protein of unknown function DUF152; KEGG: ssn:SSON_2719 hypothetical protein; hypothetical protein 1149459 12704660 EcDH1_1079 Escherichia coli DH1 hypothetical protein YP_006091042.1 1148728 D 536056 CDS YP_006091043.1 386594643 12704661 1149589..1152162 1 NC_017625.1 KEGG: sbo:SBO_2627 protein disaggregation chaperone; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 1152162 12704661 EcDH1_1080 Escherichia coli DH1 ATP-dependent chaperone ClpB YP_006091043.1 1149589 D 536056 CDS YP_006091044.1 386594644 12704666 1158016..1159314 1 NC_017625.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_2830 alpha-ketoglutarate transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) 1159314 12704666 EcDH1_1081 Escherichia coli DH1 metabolite/H+ symporter, major facilitator superfamily (MFS) YP_006091044.1 1158016 D 536056 CDS YP_006091045.1 386594645 12704667 complement(1159311..1159583) 1 NC_017625.1 KEGG: sbc:SbBS512_E2949 putative lipoprotein; putative lipoprotein 1159583 12704667 EcDH1_1082 Escherichia coli DH1 putative lipoprotein YP_006091045.1 1159311 R 536056 CDS YP_006091046.1 386594646 12704668 complement(1159680..1161035) 1 NC_017625.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: sdy:SDY_2828 phosphatidylserine synthase; phospholipase D/Transphosphatidylase 1161035 12704668 EcDH1_1083 Escherichia coli DH1 phospholipase D/Transphosphatidylase YP_006091046.1 1159680 R 536056 CDS YP_006091047.1 386594647 12704669 complement(1161149..1163809) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: sbc:SbBS512_E2952 acetyltransferase, GNAT family protein; N-acetyltransferase GCN5 1163809 12704669 EcDH1_1084 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006091047.1 1161149 R 536056 CDS YP_006091048.1 386594648 12704670 complement(1163841..1164539) 1 NC_017625.1 PFAM: DTW domain containing protein; KEGG: sdy:SDY_2826 hypothetical protein; DTW domain containing protein 1164539 12704670 EcDH1_1085 Escherichia coli DH1 DTW domain containing protein YP_006091048.1 1163841 R 536056 CDS YP_006091049.1 386594649 12704671 complement(1164608..1165027) 1 NC_017625.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sdy:SDY_2825 thioredoxin 2; thioredoxin 1165027 12704671 EcDH1_1086 Escherichia coli DH1 thioredoxin YP_006091049.1 1164608 R 536056 CDS YP_006091050.1 386594650 12704672 1165234..1166271 1 NC_017625.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sdy:SDY_2824 predicted methyltransferase; tRNA/rRNA methyltransferase SpoU 1166271 12704672 EcDH1_1087 Escherichia coli DH1 tRNA/rRNA methyltransferase SpoU YP_006091050.1 1165234 D 536056 CDS YP_006091051.1 386594651 12704673 complement(1166319..1167008) 1 NC_017625.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: sbc:SbBS512_E2956 uracil-DNA glycosylase; uracil-DNA glycosylase 1167008 12704673 EcDH1_1088 Escherichia coli DH1 uracil-DNA glycosylase YP_006091051.1 1166319 R 536056 CDS YP_006091052.1 386594652 12704674 1167313..1167696 1 NC_017625.1 PFAM: formate C-acetyltransferase glycine radical; KEGG: sbc:SbBS512_E2957 autonomous glycyl radical cofactor; formate C-acetyltransferase glycine radical 1167696 12704674 EcDH1_1089 Escherichia coli DH1 formate C-acetyltransferase glycine radical YP_006091052.1 1167313 D 536056 CDS YP_006091053.1 386594653 12704675 complement(1167752..1168339) 1 NC_017625.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sbc:SbBS512_E2958 translocator protein, LysE family; lysine exporter protein LysE/YggA 1168339 12704675 EcDH1_1090 Escherichia coli DH1 lysine exporter protein LysE/YggA YP_006091053.1 1167752 R 536056 CDS YP_006091054.1 386594654 12704676 1168442..1169323 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_2703 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 1169323 12704676 EcDH1_1091 Escherichia coli DH1 LysR family transcriptional regulator YP_006091054.1 1168442 D 536056 CDS YP_006091055.1 386594655 12704677 complement(1169532..1170866) 1 NC_017625.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ssn:SSON_2702 ATP-dependent RNA helicase SrmB; DEAD/DEAH box helicase 1170866 12704677 EcDH1_1092 Escherichia coli DH1 DEAD/DEAH box helicase YP_006091055.1 1169532 R 536056 CDS YP_006091056.1 386594656 12704678 1170998..1171735 1 NC_017625.1 PFAM: methyltransferase small; KEGG: sfv:SFV_2638 putative enzyme; methyltransferase small 1171735 12704678 EcDH1_1093 Escherichia coli DH1 methyltransferase small YP_006091056.1 1170998 D 536056 CDS YP_006091057.1 386594657 12704679 complement(1171720..1173342) 1 NC_017625.1 KEGG: sdy:SDY_2815 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; L-aspartate oxidase 1173342 12704679 EcDH1_1094 Escherichia coli DH1 L-aspartate oxidase YP_006091057.1 1171720 R 536056 CDS YP_006091058.1 386594658 12704680 1173750..1174325 1 NC_017625.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sdy:SDY_2814 RNA polymerase sigma factor RpoE; ECF subfamily RNA polymerase sigma-24 subunit 1174325 12704680 EcDH1_1095 Escherichia coli DH1 ECF subfamily RNA polymerase sigma-24 subunit YP_006091058.1 1173750 D 536056 CDS YP_006091059.1 386594659 12704681 1174358..1175008 1 NC_017625.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: sdy:SDY_2813 anti-RNA polymerase sigma factor SigE; anti sigma-E protein, RseA 1175008 12704681 EcDH1_1096 Escherichia coli DH1 anti sigma-E protein, RseA YP_006091059.1 1174358 D 536056 CDS YP_006091060.1 386594660 12704682 1175008..1175964 1 NC_017625.1 PFAM: MucB/RseB family protein; KEGG: sdy:SDY_2812 periplasmic negative regulator of sigmaE; sigma E regulatory protein MucB/RseB 1175964 12704682 EcDH1_1097 Escherichia coli DH1 sigma E regulatory protein MucB/RseB YP_006091060.1 1175008 D 536056 CDS YP_006091061.1 386594661 12704683 1175961..1176440 1 NC_017625.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: sbc:SbBS512_E2935 sigma-E factor regulatory protein RseC; sigma E positive regulator RseC/MucC 1176440 12704683 EcDH1_1098 Escherichia coli DH1 sigma E positive regulator RseC/MucC YP_006091061.1 1175961 D 536056 CDS YP_006091062.1 386594662 12704684 1176638..1178437 1 NC_017625.1 TIGRFAM: small GTP-binding protein; GTP-binding protein LepA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; GTP-binding protein LepA domain protein; KEGG: sbc:SbBS512_E2934 GTP-binding protein LepA; GTP-binding protein LepA 1178437 12704684 EcDH1_1099 Escherichia coli DH1 GTP-binding protein LepA YP_006091062.1 1176638 D 536056 CDS YP_006091063.1 386594663 12704685 1178453..1179427 1 NC_017625.1 KEGG: sbc:SbBS512_E2933 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1179427 12704685 EcDH1_1100 Escherichia coli DH1 signal peptidase I YP_006091063.1 1178453 D 536056 CDS YP_006091064.1 386594664 12704686 1179699..1180379 1 NC_017625.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: sdy:SDY_2808 ribonuclease III; Ribonuclease III 1180379 12704686 EcDH1_1101 Escherichia coli DH1 Ribonuclease III YP_006091064.1 1179699 D 536056 CDS YP_006091065.1 386594665 12704687 1180376..1181281 1 NC_017625.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: sbc:SbBS512_E2931 GTP-binding protein Era; GTP-binding protein Era 1181281 12704687 EcDH1_1102 Escherichia coli DH1 GTP-binding protein Era YP_006091065.1 1180376 D 536056 CDS YP_006091066.1 386594666 12704688 1181293..1182021 1 NC_017625.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: sdy:SDY_2806 DNA repair protein RecO; DNA repair protein RecO 1182021 12704688 EcDH1_1103 Escherichia coli DH1 DNA repair protein RecO YP_006091066.1 1181293 D 536056 CDS YP_006091067.1 386594667 12704689 1182033..1182764 1 NC_017625.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; KEGG: sdy:SDY_2805 pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 1182764 12704689 EcDH1_1104 Escherichia coli DH1 pyridoxal phosphate biosynthetic protein PdxJ YP_006091067.1 1182033 D 536056 CDS YP_006091068.1 386594668 12704690 1182764..1183144 1 NC_017625.1 KEGG: sbc:SbBS512_E2928 holo-(acyl-carrier-protein) synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase 1183144 12704690 EcDH1_1105 Escherichia coli DH1 holo-(acyl-carrier-protein) synthase YP_006091068.1 1182764 D 536056 CDS YP_006091069.1 386594669 12704691 complement(1183839..1184099) 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2927 4Fe-4S binding domain protein; 4Fe-4S ferredoxin 1184099 12704691 EcDH1_1106 Escherichia coli DH1 4Fe-4S ferredoxin YP_006091069.1 1183839 R 536056 CDS YP_006091070.1 386594670 12704692 complement(1184155..1185003) 1 NC_017625.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbc:SbBS512_E2926 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1185003 12704692 EcDH1_1107 Escherichia coli DH1 RpiR family transcriptional regulator YP_006091070.1 1184155 R 536056 CDS YP_006091071.1 386594671 12704693 1185212..1185847 1 NC_017625.1 TIGRFAM: HAD superfamily (subfamily IF) hydrolase, YfhB; KEGG: sbc:SbBS512_E2925 HAD hydrolase YhfB; HAD superfamily hydrolase 1185847 12704693 EcDH1_1108 Escherichia coli DH1 HAD superfamily hydrolase YP_006091071.1 1185212 D 536056 CDS YP_006091072.1 386594672 12704694 1185905..1186408 1 NC_017625.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sbc:SbBS512_E2923 tRNA-specific adenosine deaminase; CMP/dCMP deaminase zinc-binding protein 1186408 12704694 EcDH1_1109 Escherichia coli DH1 CMP/dCMP deaminase zinc-binding protein YP_006091072.1 1185905 D 536056 CDS YP_006091073.1 386594673 12704695 complement(1186405..1187961) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; KEGG: sbc:SbBS512_E2924 putative transglycosylase; lytic transglycosylase 1187961 12704695 EcDH1_1110 Escherichia coli DH1 lytic transglycosylase YP_006091073.1 1186405 R 536056 CDS YP_006091074.1 386594674 12704696 1188219..1192106 1 NC_017625.1 KEGG: ssn:SSON_2640 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine synthase 1192106 12704696 EcDH1_1111 Escherichia coli DH1 phosphoribosylformylglycinamidine synthase YP_006091074.1 1188219 D 536056 CDS YP_006091075.1 386594675 12704697 1192709..1194091 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_2746 putative 2-component sensor protein; histidine kinase 1194091 12704697 EcDH1_1112 Escherichia coli DH1 histidine kinase YP_006091075.1 1192709 D 536056 CDS YP_006091076.1 386594676 12704698 1194256..1194969 1 NC_017625.1 KEGG: sbc:SbBS512_E2920 putative lipoprotein; putative lipoprotein 1194969 12704698 EcDH1_1113 Escherichia coli DH1 putative lipoprotein YP_006091076.1 1194256 D 536056 CDS YP_006091077.1 386594677 12704699 1194959..1196293 1 NC_017625.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2919 sigma-54 dependent response regulator; putative two component, sigma54 specific, transcriptional regulator, Fis family 1196293 12704699 EcDH1_1114 Escherichia coli DH1 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_006091077.1 1194959 D 536056 CDS YP_006091078.1 386594678 12704700 1196354..1196692 1 NC_017625.1 PFAM: nitrogen regulatory protein P-II; KEGG: sdy:SDY_2743 regulatory protein P-II for glutamine synthetase; nitrogen regulatory protein P-II 1196692 12704700 EcDH1_1115 Escherichia coli DH1 nitrogen regulatory protein P-II YP_006091078.1 1196354 D 536056 CDS YP_006091079.1 386594679 12704701 complement(1196737..1197927) 1 NC_017625.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sbc:SbBS512_E2917 flavohemoprotein; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1197927 12704701 EcDH1_1116 Escherichia coli DH1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_006091079.1 1196737 R 536056 CDS YP_006091080.1 386594680 12704702 1198255..1199508 1 NC_017625.1 PFAM: Orn/Lys/Arg decarboxylase major region; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sbc:SbBS512_E2916 serine hydroxymethyltransferase; glycine hydroxymethyltransferase 1199508 12704702 EcDH1_1117 Escherichia coli DH1 glycine hydroxymethyltransferase YP_006091080.1 1198255 D 536056 CDS YP_006091081.1 386594681 12704703 complement(1199706..1200899) 1 NC_017625.1 PFAM: ROK family protein; KEGG: sbo:SBO_2578 putative NAGC-like transcriptional regulator; ROK family protein 1200899 12704703 EcDH1_1118 Escherichia coli DH1 ROK family protein YP_006091081.1 1199706 R 536056 CDS YP_006091082.1 386594682 12704704 1201017..1204298 1 NC_017625.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sbo:SBO_2577 hypothetical protein; hypothetical protein 1204298 12704704 EcDH1_1119 Escherichia coli DH1 hypothetical protein YP_006091082.1 1201017 D 536056 CDS YP_006091083.1 386594683 12704705 1204395..1205378 1 NC_017625.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sfv:SFV_2596 putative LacI-type transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1205378 12704705 EcDH1_1120 Escherichia coli DH1 periplasmic binding protein/LacI transcriptional regulator YP_006091083.1 1204395 D 536056 CDS YP_006091084.1 386594684 12704706 1205401..1206912 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_2573 putative ATP-binding component of a transport system; ABC transporter 1206912 12704706 EcDH1_1121 Escherichia coli DH1 ABC transporter YP_006091084.1 1205401 D 536056 CDS YP_006091085.1 386594685 12704707 1206937..1207935 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: ssn:SSON_2629 putative transport system permease protein; monosaccharide-transporting ATPase 1207935 12704707 EcDH1_1122 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006091085.1 1206937 D 536056 CDS YP_006091086.1 386594686 12704708 1208001..1209062 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_2628 putative oxidoreductase; alcohol dehydrogenase 1209062 12704708 EcDH1_1123 Escherichia coli DH1 alcohol dehydrogenase YP_006091086.1 1208001 D 536056 CDS YP_006091087.1 386594687 12704709 1209074..1209946 1 NC_017625.1 PFAM: Aldose 1-epimerase; KEGG: ssn:SSON_2627 hypothetical protein; aldose 1-epimerase 1209946 12704709 EcDH1_1124 Escherichia coli DH1 aldose 1-epimerase YP_006091087.1 1209074 D 536056 CDS YP_006091088.1 386594688 12704710 complement(1209994..1210416) 1 NC_017625.1 PFAM: DoxX family protein; KEGG: sfx:S2762 hypothetical protein; DoxX family protein 1210416 12704710 EcDH1_1125 Escherichia coli DH1 DoxX family protein YP_006091088.1 1209994 R 536056 CDS YP_006091089.1 386594689 12704711 complement(1210513..1211715) 1 NC_017625.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ssn:SSON_2624 phenylpropionate dioxygenase, ferredoxin reductase subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1211715 12704711 EcDH1_1126 Escherichia coli DH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_006091089.1 1210513 R 536056 CDS YP_006091090.1 386594690 12704712 complement(1211725..1212537) 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_2565 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; short-chain dehydrogenase/reductase SDR 1212537 12704712 EcDH1_1127 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006091090.1 1211725 R 536056 CDS YP_006091091.1 386594691 12704713 complement(1212534..1212854) 1 NC_017625.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: ssn:SSON_2622 3-phenylpropionate dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein 1212854 12704713 EcDH1_1128 Escherichia coli DH1 Rieske (2Fe-2S) domain-containing protein YP_006091091.1 1212534 R 536056 CDS YP_006091092.1 386594692 12704714 complement(1212854..1213372) 1 NC_017625.1 PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: sfx:S2758 3-phenylpropionate dioxygenase subunit beta; aromatic-ring-hydroxylating dioxygenase subunit beta 1213372 12704714 EcDH1_1129 Escherichia coli DH1 aromatic-ring-hydroxylating dioxygenase subunit beta YP_006091092.1 1212854 R 536056 CDS YP_006091093.1 386594693 12704715 complement(1213369..1214730) 1 NC_017625.1 PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: ssn:SSON_2620 large terminal subunit of phenylpropionate dioxygenase; aromatic-ring-hydroxylating dioxygenase subunit alpha-like protein 1214730 12704715 EcDH1_1130 Escherichia coli DH1 aromatic-ring-hydroxylating dioxygenase subunit alpha-like protein YP_006091093.1 1213369 R 536056 CDS YP_006091094.1 386594694 12704716 1214866..1215756 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_2561 DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism; LysR family transcriptional regulator 1215756 12704716 EcDH1_1131 Escherichia coli DH1 LysR family transcriptional regulator YP_006091094.1 1214866 D 536056 CDS YP_006091095.1 386594695 12704717 1215916..1217055 1 NC_017625.1 KEGG: ssn:SSON_2618 putative 3-phenylpropionic acid transporter; TIGRFAM: phenyl proprionate permease family protein; PFAM: proton/sugar symporter LacY; major facilitator superfamily MFS_1; phenyl proprionate permease family protein 1217055 12704717 EcDH1_1132 Escherichia coli DH1 phenyl proprionate permease family protein YP_006091095.1 1215916 D 536056 CDS YP_006091096.1 386594696 12704718 complement(1217047..1218327) 1 NC_017625.1 PFAM: PRD domain protein; KEGG: sbo:SBO_2559 stationary phase inducible protein CsiE; transcriptional antiterminator BglG 1218327 12704718 EcDH1_1133 Escherichia coli DH1 transcriptional antiterminator BglG YP_006091096.1 1217047 R 536056 CDS YP_006091097.1 386594697 12704719 complement(1218518..1219372) 1 NC_017625.1 KEGG: sdy:SDY_2730 putative enzyme; hypothetical protein 1219372 12704719 EcDH1_1134 Escherichia coli DH1 hypothetical protein YP_006091097.1 1218518 R 536056 CDS YP_006091098.1 386594698 12704720 complement(1219517..1220320) 1 NC_017625.1 PFAM: inositol monophosphatase; KEGG: sbo:SBO_2557 inositol monophosphatase; inositol-phosphate phosphatase 1220320 12704720 EcDH1_1135 Escherichia coli DH1 inositol-phosphate phosphatase YP_006091098.1 1219517 R 536056 CDS YP_006091099.1 386594699 12704721 1220439..1221179 1 NC_017625.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbc:SbBS512_E2907 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase, TrmH family, group 1 1221179 12704721 EcDH1_1136 Escherichia coli DH1 RNA methyltransferase, TrmH family, group 1 YP_006091099.1 1220439 D 536056 CDS YP_006091100.1 386594700 12704722 1221631..1222119 1 NC_017625.1 TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: sdy:SDY_2727 DNA-binding transcriptional repressor; AsnC family transcriptional regulator 1222119 12704722 EcDH1_1137 Escherichia coli DH1 AsnC family transcriptional regulator YP_006091100.1 1221631 D 536056 CDS YP_006091101.1 386594701 12704723 1222231..1223445 1 NC_017625.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sdy:SDY_2726 putative aminotransferase; cysteine desulfurase IscS 1223445 12704723 EcDH1_1138 Escherichia coli DH1 cysteine desulfurase IscS YP_006091101.1 1222231 D 536056 CDS YP_006091102.1 386594702 12704724 1223473..1223859 1 NC_017625.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: sdy:SDY_2725 scaffold protein; FeS cluster assembly scaffold IscU 1223859 12704724 EcDH1_1139 Escherichia coli DH1 FeS cluster assembly scaffold IscU YP_006091102.1 1223473 D 536056 CDS YP_006091103.1 386594703 12704725 1223876..1224199 1 NC_017625.1 TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sdy:SDY_2724 iron-sulfur cluster assembly protein; iron-sulfur cluster assembly protein IscA 1224199 12704725 EcDH1_1140 Escherichia coli DH1 iron-sulfur cluster assembly protein IscA YP_006091103.1 1223876 D 536056 CDS YP_006091104.1 386594704 12704726 1224295..1224810 1 NC_017625.1 TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSC20 oligomerisation; KEGG: sbc:SbBS512_E2902 Fe-S protein assembly co-chaperone HscB; co-chaperone Hsc20 1224810 12704726 EcDH1_1141 Escherichia coli DH1 co-chaperone Hsc20 YP_006091104.1 1224295 D 536056 CDS YP_006091105.1 386594705 12704727 1224827..1226677 1 NC_017625.1 KEGG: sdy:SDY_2722 chaperone protein HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; Fe-S protein assembly chaperone HscA 1226677 12704727 EcDH1_1142 Escherichia coli DH1 Fe-S protein assembly chaperone HscA YP_006091105.1 1224827 D 536056 CDS YP_006091106.1 386594706 12704728 1226679..1227014 1 NC_017625.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: sbc:SbBS512_E2900 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 1227014 12704728 EcDH1_1143 Escherichia coli DH1 ferredoxin, 2Fe-2S type, ISC system YP_006091106.1 1226679 D 536056 CDS YP_006091107.1 386594707 12704729 1227026..1227226 1 NC_017625.1 TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: sdy:SDY_2720 hypothetical protein; FeS assembly protein IscX 1227226 12704729 EcDH1_1144 Escherichia coli DH1 FeS assembly protein IscX YP_006091107.1 1227026 D 536056 CDS YP_006091108.1 386594708 12704730 1227404..1228687 1 NC_017625.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ssn:SSON_2605 aminopeptidase B; PepB aminopeptidase 1228687 12704730 EcDH1_1145 Escherichia coli DH1 PepB aminopeptidase YP_006091108.1 1227404 D 536056 CDS YP_006091109.1 386594709 12704731 1228829..1229605 1 NC_017625.1 PFAM: SseB family protein; KEGG: sfv:SFV_2570 enhanced serine sensitivity protein SseB; SseB family protein 1229605 12704731 EcDH1_1146 Escherichia coli DH1 SseB family protein YP_006091109.1 1228829 D 536056 CDS YP_006091110.1 386594710 12704732 complement(1230423..1231268) 1 NC_017625.1 PFAM: Rhodanese domain protein; KEGG: ssn:SSON_2603 3-mercaptopyruvate sulfurtransferase; Rhodanese domain-containing protein 1231268 12704732 EcDH1_1147 Escherichia coli DH1 Rhodanese domain-containing protein YP_006091110.1 1230423 R 536056 CDS YP_006091111.1 386594711 12704733 1231475..1236436 1 NC_017625.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: ssn:SSON_2602 hypothetical protein; alpha-2-macroglobulin domain-containing protein 1236436 12704733 EcDH1_1148 Escherichia coli DH1 alpha-2-macroglobulin domain-containing protein YP_006091111.1 1231475 D 536056 CDS YP_006091112.1 386594712 12704734 1236437..1238749 1 NC_017625.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: sbc:SbBS512_E2894 penicillin-binding protein 1C; penicillin-binding protein 1C 1238749 12704734 EcDH1_1149 Escherichia coli DH1 penicillin-binding protein 1C YP_006091112.1 1236437 D 536056 CDS YP_006091113.1 386594713 12704735 1238898..1239329 1 NC_017625.1 PFAM: nucleoside diphosphate kinase; KEGG: sdy:SDY_2714 nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1239329 12704735 EcDH1_1150 Escherichia coli DH1 nucleoside-diphosphate kinase YP_006091113.1 1238898 D 536056 CDS YP_006091114.1 386594714 12704736 1239479..1240633 1 NC_017625.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: sdy:SDY_2713 hypothetical protein; radical SAM enzyme, Cfr family 1240633 12704736 EcDH1_1151 Escherichia coli DH1 radical SAM enzyme, Cfr family YP_006091114.1 1239479 D 536056 CDS YP_006091115.1 386594715 12704737 1240918..1241931 1 NC_017625.1 PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E2891 helix-turn-helix DNA-binding domain protein; XRE family transcriptional regulator 1241931 12704737 EcDH1_1152 Escherichia coli DH1 XRE family transcriptional regulator YP_006091115.1 1240918 D 536056 CDS YP_006091116.1 386594716 12704738 1241958..1243076 1 NC_017625.1 KEGG: sbo:SBO_2539 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1243076 12704738 EcDH1_1153 Escherichia coli DH1 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_006091116.1 1241958 D 536056 CDS YP_006091117.1 386594717 12704739 1243187..1244461 1 NC_017625.1 KEGG: ssn:SSON_2596 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 1244461 12704739 EcDH1_1154 Escherichia coli DH1 histidyl-tRNA synthetase YP_006091117.1 1243187 D 536056 CDS YP_006091118.1 386594718 12704740 1244479..1245099 1 NC_017625.1 KEGG: sdy:SDY_2709 hypothetical protein; hypothetical protein 1245099 12704740 EcDH1_1155 Escherichia coli DH1 hypothetical protein YP_006091118.1 1244479 D 536056 CDS YP_006091119.1 386594719 12704741 1245110..1246288 1 NC_017625.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: sdy:SDY_2708 outer membrane protein assembly complex subunit YfgL; outer membrane assembly lipoprotein YfgL 1246288 12704741 EcDH1_1156 Escherichia coli DH1 outer membrane assembly lipoprotein YfgL YP_006091119.1 1245110 D 536056 CDS YP_006091120.1 386594720 12704742 1246406..1247878 1 NC_017625.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: sfv:SFV_2558 GTP-binding protein EngA; small GTP-binding protein 1247878 12704742 EcDH1_1157 Escherichia coli DH1 small GTP-binding protein YP_006091120.1 1246406 D 536056 CDS YP_006091121.1 386594721 12704743 1247948..1248163 1 NC_017625.1 PFAM: protein of unknown function DUF1407; KEGG: sbo:SBO_2534 hypothetical protein; hypothetical protein 1248163 12704743 EcDH1_1158 Escherichia coli DH1 hypothetical protein YP_006091121.1 1247948 D 536056 CDS YP_006091122.1 386594722 12704744 complement(1248160..1249530) 1 NC_017625.1 KEGG: sbc:SbBS512_E2885 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1249530 12704744 EcDH1_1159 Escherichia coli DH1 exodeoxyribonuclease VII large subunit YP_006091122.1 1248160 R 536056 CDS YP_006091123.1 386594723 12704745 1249692..1251158 1 NC_017625.1 KEGG: sbc:SbBS512_E2883 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 1251158 12704745 EcDH1_1160 Escherichia coli DH1 inosine-5'-monophosphate dehydrogenase YP_006091123.1 1249692 D 536056 CDS YP_006091124.1 386594724 12704746 1251227..1252804 1 NC_017625.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; KEGG: sfx:S2725 bifunctional GMP synthase/glutamine amidotransferase protein; GMP synthase large subunit 1252804 12704746 EcDH1_1161 Escherichia coli DH1 GMP synthase large subunit YP_006091124.1 1251227 D 536056 CDS YP_006091125.1 386594725 12704747 complement(1252897..1253436) 1 NC_017625.1 KEGG: sdy:SDY_2702 hypothetical protein; hypothetical protein 1253436 12704747 EcDH1_1162 Escherichia coli DH1 hypothetical protein YP_006091125.1 1252897 R 536056 CDS YP_006091126.1 386594726 12704748 complement(1253452..1253967) 1 NC_017625.1 PFAM: 17 kDa surface antigen; KEGG: ssn:SSON_2587 putative outer membrane lipoprotein; 17 kDa surface antigen 1253967 12704748 EcDH1_1163 Escherichia coli DH1 17 kDa surface antigen YP_006091126.1 1253452 R 536056 CDS YP_006091127.1 386594727 12704749 complement(1254281..1254472) 1 NC_017625.1 KEGG: sdy:SDY_2696 hypothetical protein; hypothetical protein 1254472 12704749 EcDH1_1164 Escherichia coli DH1 hypothetical protein YP_006091127.1 1254281 R 536056 CDS YP_006091128.1 386594728 12704750 1254490..1254642 1 NC_017625.1 hypothetical protein 1254642 12704750 EcDH1_1165 Escherichia coli DH1 hypothetical protein YP_006091128.1 1254490 D 536056 CDS YP_006091129.1 386594729 12704751 1254824..1257067 1 NC_017625.1 PFAM: EAL domain protein; MASE1 domain protein; SMART: GGDEF domain containing protein; KEGG: ssn:SSON_2585 putative cytochrome c-type biogenesis protein; diguanylate cyclase/phosphodiesterase 1257067 12704751 EcDH1_1166 Escherichia coli DH1 diguanylate cyclase/phosphodiesterase YP_006091129.1 1254824 D 536056 CDS YP_006091130.1 386594730 12704752 complement(1257106..1258647) 1 NC_017625.1 PFAM: Ppx/GppA phosphatase; KEGG: ssn:SSON_2584 exopolyphosphatase; Ppx/GppA phosphatase 1258647 12704752 EcDH1_1167 Escherichia coli DH1 Ppx/GppA phosphatase YP_006091130.1 1257106 R 536056 CDS YP_006091131.1 386594731 12704753 complement(1258652..1260718) 1 NC_017625.1 PFAM: Polyphosphate kinase; KEGG: sdy:SDY_2690 polyphosphate kinase; polyphosphate kinase 1260718 12704753 EcDH1_1168 Escherichia coli DH1 polyphosphate kinase YP_006091131.1 1258652 R 536056 CDS YP_006091132.1 386594732 12704754 complement(1260890..1261528) 1 NC_017625.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: sfv:SFV_2545 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 1261528 12704754 EcDH1_1169 Escherichia coli DH1 phosphoribosylglycinamide formyltransferase YP_006091132.1 1260890 R 536056 CDS YP_006091133.1 386594733 12704755 complement(1261528..1262565) 1 NC_017625.1 KEGG: sfx:S2692 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase 1262565 12704755 EcDH1_1170 Escherichia coli DH1 phosphoribosylformylglycinamidine cyclo-ligase YP_006091133.1 1261528 R 536056 CDS YP_006091134.1 386594734 12704756 1262890..1263516 1 NC_017625.1 KEGG: sdy:SDY_2687 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 1263516 12704756 EcDH1_1171 Escherichia coli DH1 uracil phosphoribosyltransferase YP_006091134.1 1262890 D 536056 CDS YP_006091135.1 386594735 12704757 1263602..1264891 1 NC_017625.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_2579 uracil transporter; uracil-xanthine permease 1264891 12704757 EcDH1_1172 Escherichia coli DH1 uracil-xanthine permease YP_006091135.1 1263602 D 536056 CDS YP_006091136.1 386594736 12704758 1264941..1265687 1 NC_017625.1 TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: sbc:SbBS512_E2870 DnaA family protein Hda; DnaA regulatory inactivator Hda 1265687 12704758 EcDH1_1173 Escherichia coli DH1 DnaA regulatory inactivator Hda YP_006091136.1 1264941 D 536056 CDS YP_006091137.1 386594737 12704759 complement(1265825..1266184) 1 NC_017625.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sdy:SDY_2684 putative oxidoreductase; arsenate reductase 1266184 12704759 EcDH1_1174 Escherichia coli DH1 arsenate reductase YP_006091137.1 1265825 R 536056 CDS YP_006091138.1 386594738 12704760 complement(1266205..1267668) 1 NC_017625.1 PFAM: peptidase M48 Ste24p; KEGG: sfv:SFV_2539 hypothetical protein; peptidase M48 Ste24p 1267668 12704760 EcDH1_1175 Escherichia coli DH1 peptidase M48 Ste24p YP_006091138.1 1266205 R 536056 CDS YP_006091139.1 386594739 12704761 1267881..1268942 1 NC_017625.1 PFAM: protein of unknown function UPF0118; KEGG: sdy:SDY_2682 putative permease; hypothetical protein 1268942 12704761 EcDH1_1176 Escherichia coli DH1 hypothetical protein YP_006091139.1 1267881 D 536056 CDS YP_006091140.1 386594740 12704762 complement(1268980..1269828) 1 NC_017625.1 PFAM: formate/nitrite transporter; KEGG: sdy:SDY_2681 predicted formate transporter; formate/nitrite transporter 1269828 12704762 EcDH1_1177 Escherichia coli DH1 formate/nitrite transporter YP_006091140.1 1268980 R 536056 CDS YP_006091141.1 386594741 12704763 complement(1269850..1271862) 1 NC_017625.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: ssn:SSON_2572 putative 2-component regulator, interaction with sigma 54; Fis family NifA subfamily transcriptional regulator 1271862 12704763 EcDH1_1178 Escherichia coli DH1 Fis family NifA subfamily transcriptional regulator YP_006091141.1 1269850 R 536056 CDS YP_006091142.1 386594742 12704764 complement(1271892..1272305) 1 NC_017625.1 PFAM: formate hydrogenlyase maturation HycH; KEGG: ssn:SSON_2571 putative protein processing element; formate hydrogenlyase maturation HycH 1272305 12704764 EcDH1_1179 Escherichia coli DH1 formate hydrogenlyase maturation HycH YP_006091142.1 1271892 R 536056 CDS YP_006091143.1 386594743 12704765 complement(1272298..1273056) 1 NC_017625.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sbo:SBO_2510 hydrogenase 4 Fe-S subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 1273056 12704765 EcDH1_1180 Escherichia coli DH1 NADH ubiquinone oxidoreductase 20 kDa subunit YP_006091143.1 1272298 R 536056 CDS YP_006091144.1 386594744 12704766 complement(1273053..1273598) 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2533 hydrogenase 4 subunit H; 4Fe-4S ferredoxin 1273598 12704766 EcDH1_1181 Escherichia coli DH1 4Fe-4S ferredoxin YP_006091144.1 1273053 R 536056 CDS YP_006091145.1 386594745 12704767 complement(1273608..1275275) 1 NC_017625.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: ssn:SSON_2568 hydrogenase 4 subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1275275 12704767 EcDH1_1182 Escherichia coli DH1 NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_006091145.1 1273608 R 536056 CDS YP_006091146.1 386594746 12704768 complement(1275265..1276845) 1 NC_017625.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ssn:SSON_2567 hydrogenase 4 subunit F; NADH dehydrogenase (quinone) 1276845 12704768 EcDH1_1183 Escherichia coli DH1 NADH dehydrogenase (quinone) YP_006091146.1 1275265 R 536056 CDS YP_006091147.1 386594747 12704769 complement(1276850..1277500) 1 NC_017625.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ssn:SSON_2566 hydrogenase 4 membrane subunit; NADH-ubiquinone oxidoreductase chain 4L 1277500 12704769 EcDH1_1184 Escherichia coli DH1 NADH-ubiquinone oxidoreductase chain 4L YP_006091147.1 1276850 R 536056 CDS YP_006091148.1 386594748 12704770 complement(1277512..1278951) 1 NC_017625.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sfx:S2677 hydrogenase 4 subunit D; NADH dehydrogenase (quinone) 1278951 12704770 EcDH1_1185 Escherichia coli DH1 NADH dehydrogenase (quinone) YP_006091148.1 1277512 R 536056 CDS YP_006091149.1 386594749 12704771 complement(1278968..1279915) 1 NC_017625.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sfx:S2676 hydrogenase 4 membrane subunit; respiratory-chain NADH dehydrogenase subunit 1 1279915 12704771 EcDH1_1186 Escherichia coli DH1 respiratory-chain NADH dehydrogenase subunit 1 YP_006091149.1 1278968 R 536056 CDS YP_006091150.1 386594750 12704772 complement(1279926..1281944) 1 NC_017625.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ssn:SSON_2563 hydrogenase 4 subunit B; NADH dehydrogenase (quinone) 1281944 12704772 EcDH1_1187 Escherichia coli DH1 NADH dehydrogenase (quinone) YP_006091150.1 1279926 R 536056 CDS YP_006091151.1 386594751 12704773 complement(1281944..1282561) 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2526 hydrogenase 4 Fe-S subunit; 4Fe-4S ferredoxin 1282561 12704773 EcDH1_1188 Escherichia coli DH1 4Fe-4S ferredoxin YP_006091151.1 1281944 R 536056 CDS YP_006091152.1 386594752 12704774 complement(1282814..1283284) 1 NC_017625.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; Redoxin domain protein; KEGG: sdy:SDY_2669 thioredoxin-dependent thiol peroxidase; peroxiredoxin 1283284 12704774 EcDH1_1189 Escherichia coli DH1 peroxiredoxin YP_006091152.1 1282814 R 536056 CDS YP_006091153.1 386594753 12704775 complement(1283284..1283856) 1 NC_017625.1 PFAM: amino acid-binding ACT domain protein; KEGG: sbc:SbBS512_E2851 glycine cleavage system transcriptional repressor; amino acid-binding ACT protein 1283856 12704775 EcDH1_1190 Escherichia coli DH1 amino acid-binding ACT protein YP_006091153.1 1283284 R 536056 CDS YP_006091154.1 386594754 12704776 1284002..1284880 1 NC_017625.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 1284880 12704776 EcDH1_1191 Escherichia coli DH1 dihydrodipicolinate synthase YP_006091154.1 1284002 D 536056 CDS YP_006091155.1 386594755 12704777 1284897..1285931 1 NC_017625.1 PFAM: NlpBDapX family lipoprotein; KEGG: ssn:SSON_2558 lipoprotein; NlpBDapX family lipoprotein 1285931 12704777 EcDH1_1192 Escherichia coli DH1 NlpBDapX family lipoprotein YP_006091155.1 1284897 D 536056 CDS YP_006091156.1 386594756 12704778 1286144..1286857 1 NC_017625.1 KEGG: sbc:SbBS512_E2848 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1286857 12704778 EcDH1_1193 Escherichia coli DH1 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_006091156.1 1286144 D 536056 CDS YP_006091157.1 386594757 12704779 1287025..1287888 1 NC_017625.1 PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: sfv:SFV_2520 hypothetical protein; zinc metallopeptidase 1287888 12704779 EcDH1_1194 Escherichia coli DH1 zinc metallopeptidase YP_006091157.1 1287025 D 536056 CDS YP_006091158.1 386594758 12704780 1287903..1289918 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; protein of unknown function DUF699 ATPase putative; KEGG: sfx:S2667 hypothetical protein; hypothetical protein 1289918 12704780 EcDH1_1195 Escherichia coli DH1 hypothetical protein YP_006091158.1 1287903 D 536056 CDS YP_006091159.1 386594759 12704781 1289992..1290690 1 NC_017625.1 PFAM: dienelactone hydrolase; phospholipase/Carboxylesterase; KEGG: sfv:SFV_2518 esterase YpfH; phospholipase/Carboxylesterase 1290690 12704781 EcDH1_1196 Escherichia coli DH1 phospholipase/Carboxylesterase YP_006091159.1 1289992 D 536056 CDS YP_006091160.1 386594760 12704782 complement(1290800..1291000) 1 NC_017625.1 KEGG: sdy:SDY_2657 hypothetical protein; hypothetical protein 1291000 12704782 EcDH1_1197 Escherichia coli DH1 hypothetical protein YP_006091160.1 1290800 R 536056 CDS YP_006091161.1 386594761 12704783 complement(1291028..1292155) 1 NC_017625.1 TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sbo:SBO_2488 succinyl-diaminopimelate desuccinylase; succinyl-diaminopimelate desuccinylase 1292155 12704783 EcDH1_1198 Escherichia coli DH1 succinyl-diaminopimelate desuccinylase YP_006091161.1 1291028 R 536056 CDS YP_006091162.1 386594762 12704784 complement(1292159..1292515) 1 NC_017625.1 PFAM: arsenate reductase and related; KEGG: sdy:SDY_2655 hypothetical protein; arsenate reductase 1292515 12704784 EcDH1_1199 Escherichia coli DH1 arsenate reductase YP_006091162.1 1292159 R 536056 CDS YP_006091163.1 386594763 12704785 complement(1293054..1296167) 1 NC_017625.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: ssn:SSON_2550 aminoglycoside/multidrug efflux system; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1296167 12704785 EcDH1_1200 Escherichia coli DH1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_006091163.1 1293054 R 536056 CDS YP_006091164.1 386594764 12704786 complement(1296331..1298031) 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sdy:SDY_2653 nitrate/nitrite sensor protein NarQ; histidine kinase 1298031 12704786 EcDH1_1201 Escherichia coli DH1 histidine kinase YP_006091164.1 1296331 R 536056 CDS YP_006091165.1 386594765 12704787 1298237..1300216 1 NC_017625.1 TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_2484 putative oxidoreductase Fe-S binding subunit; glutamate synthase, small subunit 1300216 12704787 EcDH1_1202 Escherichia coli DH1 glutamate synthase, small subunit YP_006091165.1 1298237 D 536056 CDS YP_006091166.1 386594766 12704788 1300284..1300859 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E2835 hydrolase, NUDIX family; NUDIX hydrolase 1300859 12704788 EcDH1_1203 Escherichia coli DH1 NUDIX hydrolase YP_006091166.1 1300284 D 536056 CDS YP_006091167.1 386594767 12704789 1300985..1302028 1 NC_017625.1 PFAM: protein of unknown function DUF1176; KEGG: sbo:SBO_2482 hypothetical protein; hypothetical protein 1302028 12704789 EcDH1_1204 Escherichia coli DH1 hypothetical protein YP_006091167.1 1300985 D 536056 CDS YP_006091168.1 386594768 12704790 complement(1302123..1304126) 1 NC_017625.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sfx:S2658 transketolase; transketolase 1304126 12704790 EcDH1_1205 Escherichia coli DH1 transketolase YP_006091168.1 1302123 R 536056 CDS YP_006091169.1 386594769 12704791 complement(1304146..1305096) 1 NC_017625.1 KEGG: ssn:SSON_2544 transaldolase A; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 1305096 12704791 EcDH1_1206 Escherichia coli DH1 transaldolase YP_006091169.1 1304146 R 536056 CDS YP_006091170.1 386594770 12704792 1305385..1307664 1 NC_017625.1 PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding; KEGG: sdy:SDY_2645 malic enzyme; Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase 1307664 12704792 EcDH1_1207 Escherichia coli DH1 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase YP_006091170.1 1305385 D 536056 CDS YP_006091171.1 386594771 12704793 1307957..1308292 1 NC_017625.1 PFAM: microcompartments protein; KEGG: sfv:SFV_2506 hypothetical protein; microcompartments protein 1308292 12704793 EcDH1_1208 Escherichia coli DH1 microcompartments protein YP_006091171.1 1307957 D 536056 CDS YP_006091172.1 386594772 12704794 1308305..1308784 1 NC_017625.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: sbc:SbBS512_E2827 ethanolamine utilization protein, EutP; ethanolamine utilization protein, EutP 1308784 12704794 EcDH1_1209 Escherichia coli DH1 ethanolamine utilization protein, EutP YP_006091172.1 1308305 D 536056 CDS YP_006091173.1 386594773 12704795 1308759..1309460 1 NC_017625.1 PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: ssn:SSON_2540 hypothetical protein; Ethanolamine utilization EutQ family protein 1309460 12704795 EcDH1_1210 Escherichia coli DH1 Ethanolamine utilization EutQ family protein YP_006091173.1 1308759 D 536056 CDS YP_006091174.1 386594774 12704796 1309457..1310260 1 NC_017625.1 PFAM: cobalamin adenosyltransferase; KEGG: ssn:SSON_2539 hypothetical protein; cob(I)yrinic acid a,c-diamide adenosyltransferase 1310260 12704796 EcDH1_1211 Escherichia coli DH1 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_006091174.1 1309457 D 536056 CDS YP_006091175.1 386594775 12704797 1310257..1311273 1 NC_017625.1 KEGG: ssn:SSON_2538 phosphotransacetylase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase 1311273 12704797 EcDH1_1212 Escherichia coli DH1 phosphate acetyltransferase YP_006091175.1 1310257 D 536056 CDS YP_006091176.1 386594776 12704798 1311312..1311605 1 NC_017625.1 PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2823 ethanolamine utilization protein EutM; microcompartments protein 1311605 12704798 EcDH1_1213 Escherichia coli DH1 microcompartments protein YP_006091176.1 1311312 D 536056 CDS YP_006091177.1 386594777 12704799 1311712..1311999 1 NC_017625.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: sbc:SbBS512_E2822 ethanolamine utilization protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1311999 12704799 EcDH1_1214 Escherichia coli DH1 ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_006091177.1 1311712 D 536056 CDS YP_006091178.1 386594778 12704800 1312011..1313414 1 NC_017625.1 PFAM: Aldehyde Dehydrogenase; KEGG: sbo:SBO_2470 ethanolamine utilization; aldehyde dehydrogenase 1313414 12704800 EcDH1_1215 Escherichia coli DH1 aldehyde dehydrogenase YP_006091178.1 1312011 D 536056 CDS YP_006091179.1 386594779 12704801 1313425..1314261 1 NC_017625.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: sbc:SbBS512_E2820 ethanolamine utilization protein EutJ; ethanolamine utilization protein EutJ family protein 1314261 12704801 EcDH1_1216 Escherichia coli DH1 ethanolamine utilization protein EutJ family protein YP_006091179.1 1313425 D 536056 CDS YP_006091180.1 386594780 12704802 1314251..1315438 1 NC_017625.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ssn:SSON_2533 EutG; iron-containing alcohol dehydrogenase 1315438 12704802 EcDH1_1217 Escherichia coli DH1 iron-containing alcohol dehydrogenase YP_006091180.1 1314251 D 536056 CDS YP_006091181.1 386594781 12704803 1315655..1316881 1 NC_017625.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: ssn:SSON_2532 EutH; Ethanolamine utilization protein EutH 1316881 12704803 EcDH1_1218 Escherichia coli DH1 Ethanolamine utilization protein EutH YP_006091181.1 1315655 D 536056 CDS YP_006091182.1 386594782 12704804 1316878..1318281 1 NC_017625.1 PFAM: Ethanolamine utilisation EutA; KEGG: ssn:SSON_2531 reactivating factor for ethanolamine ammonia lyase; Ethanolamine utilization EutA 1318281 12704804 EcDH1_1219 Escherichia coli DH1 Ethanolamine utilization EutA YP_006091182.1 1316878 D 536056 CDS YP_006091183.1 386594783 12704805 1318293..1319654 1 NC_017625.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: sbc:SbBS512_E2816 ethanolamine ammonia-lyase, large subunit; Ethanolamine ammonia lyase large subunit 1319654 12704805 EcDH1_1220 Escherichia coli DH1 Ethanolamine ammonia lyase large subunit YP_006091183.1 1318293 D 536056 CDS YP_006091184.1 386594784 12704806 1319675..1320562 1 NC_017625.1 PFAM: Ethanolamine ammonia-lyase light chain; KEGG: ssn:SSON_2529 ethanolamine ammonia-lyase small subunit; ethanolamine ammonia-lyase 1320562 12704806 EcDH1_1221 Escherichia coli DH1 ethanolamine ammonia-lyase YP_006091184.1 1319675 D 536056 CDS YP_006091185.1 386594785 12704807 1320572..1321231 1 NC_017625.1 PFAM: microcompartments protein; KEGG: sdy:SDY_2637 hypothetical protein; microcompartments protein 1321231 12704807 EcDH1_1222 Escherichia coli DH1 microcompartments protein YP_006091185.1 1320572 D 536056 CDS YP_006091186.1 386594786 12704808 1321244..1321744 1 NC_017625.1 PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2810 putative ethanolamine utilization protein EutK; microcompartments protein 1321744 12704808 EcDH1_1223 Escherichia coli DH1 microcompartments protein YP_006091186.1 1321244 D 536056 CDS YP_006091187.1 386594787 12704809 1321790..1322842 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sdy:SDY_2635 transcriptional regulator EutR; AraC family transcriptional regulator 1322842 12704809 EcDH1_1224 Escherichia coli DH1 AraC family transcriptional regulator YP_006091187.1 1321790 D 536056 CDS YP_006091188.1 386594788 12704810 complement(1322848..1323747) 1 NC_017625.1 PFAM: coproporphyrinogen III oxidase; KEGG: sbo:SBO_2461 coproporphyrinogen III oxidase; coproporphyrinogen oxidase 1323747 12704810 EcDH1_1225 Escherichia coli DH1 coproporphyrinogen oxidase YP_006091188.1 1322848 R 536056 CDS YP_006091189.1 386594789 12704811 complement(1323751..1324620) 1 NC_017625.1 PFAM: cell wall hydrolase/autolysin; KEGG: sbc:SbBS512_E2807 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 1324620 12704811 EcDH1_1226 Escherichia coli DH1 N-acetylmuramoyl-L-alanine amidase YP_006091189.1 1323751 R 536056 CDS YP_006091190.1 386594790 12704812 1324834..1325259 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_2632 putative acetyltransferase; N-acetyltransferase GCN5 1325259 12704812 EcDH1_1227 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006091190.1 1324834 D 536056 CDS YP_006091191.1 386594791 12704813 1325246..1325695 1 NC_017625.1 KEGG: sdy:SDY_2631 hypothetical protein; hypothetical protein 1325695 12704813 EcDH1_1228 Escherichia coli DH1 hypothetical protein YP_006091191.1 1325246 D 536056 CDS YP_006091192.1 386594792 12704814 1325756..1326331 1 NC_017625.1 PFAM: protein of unknown function DUF1131; KEGG: sbc:SbBS512_E2804 putative lipoprotein; hypothetical protein 1326331 12704814 EcDH1_1229 Escherichia coli DH1 hypothetical protein YP_006091192.1 1325756 D 536056 CDS YP_006091193.1 386594793 12704815 1326427..1327326 1 NC_017625.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sbc:SbBS512_E2803 dyp-type peroxidase family protein; dyp-type peroxidase family protein 1327326 12704815 EcDH1_1230 Escherichia coli DH1 dyp-type peroxidase family protein YP_006091193.1 1326427 D 536056 CDS YP_006091194.1 386594794 12704816 complement(1327566..1328870) 1 NC_017625.1 PFAM: beta-lactamase; KEGG: ssn:SSON_2519 hypothetical protein; beta-lactamase 1328870 12704816 EcDH1_1231 Escherichia coli DH1 beta-lactamase YP_006091194.1 1327566 R 536056 CDS YP_006091195.1 386594795 12704817 complement(1328875..1330299) 1 NC_017625.1 PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sfx:S2630 N-acetylmuramic acid phosphotransfer permease; PTS system transporter subunit IIC 1330299 12704817 EcDH1_1232 Escherichia coli DH1 PTS system transporter subunit IIC YP_006091195.1 1328875 R 536056 CDS YP_006091196.1 386594796 12704818 complement(1330303..1331199) 1 NC_017625.1 TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); KEGG: sfv:SFV_2481 N-acetylmuramic acid-6-phosphate etherase; RpiR family transcriptional regulator 1331199 12704818 EcDH1_1233 Escherichia coli DH1 RpiR family transcriptional regulator YP_006091196.1 1330303 R 536056 CDS YP_006091197.1 386594797 12704819 1331363..1332220 1 NC_017625.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbc:SbBS512_E2799 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1332220 12704819 EcDH1_1234 Escherichia coli DH1 RpiR family transcriptional regulator YP_006091197.1 1331363 D 536056 CDS YP_006091198.1 386594798 12704820 1332349..1333140 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbc:SbBS512_E2798 oxidoreductase UcpA; short-chain dehydrogenase/reductase SDR 1333140 12704820 EcDH1_1235 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006091198.1 1332349 D 536056 CDS YP_006091199.1 386594799 12704821 1333444..1334460 1 NC_017625.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sbo:SBO_2450 thiosulfate transporter subunit; sulfate ABC transporter substrate-binding protein 1334460 12704821 EcDH1_1236 Escherichia coli DH1 sulfate ABC transporter substrate-binding protein YP_006091199.1 1333444 D 536056 CDS YP_006091200.1 386594800 12704822 1334460..1335293 1 NC_017625.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2796 sulfate ABC transporter, permease protein CysT; sulfate ABC transporter permease 1335293 12704822 EcDH1_1237 Escherichia coli DH1 sulfate ABC transporter permease YP_006091200.1 1334460 D 536056 CDS YP_006091201.1 386594801 12704823 1335293..1336168 1 NC_017625.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2795 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter permease 1336168 12704823 EcDH1_1238 Escherichia coli DH1 sulfate ABC transporter permease YP_006091201.1 1335293 D 536056 CDS YP_006091202.1 386594802 12704824 1336158..1337255 1 NC_017625.1 KEGG: sbo:SBO_2447 sulfate/thiosulfate transporter subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 1337255 12704824 EcDH1_1239 Escherichia coli DH1 sulfate ABC transporter ATPase YP_006091202.1 1336158 D 536056 CDS YP_006091203.1 386594803 12704825 1337389..1338300 1 NC_017625.1 TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ssn:SSON_2510 cysteine synthase B; cysteine synthase B 1338300 12704825 EcDH1_1240 Escherichia coli DH1 cysteine synthase B YP_006091203.1 1337389 D 536056 CDS YP_006091204.1 386594804 12704826 complement(1338489..1339223) 1 NC_017625.1 PFAM: WGR domain protein; KEGG: sfv:SFV_2472 hypothetical protein; WGR domain protein 1339223 12704826 EcDH1_1241 Escherichia coli DH1 WGR domain protein YP_006091204.1 1338489 R 536056 CDS YP_006091205.1 386594805 12704827 complement(1339256..1339630) 1 NC_017625.1 KEGG: sfv:SFV_2471 hypothetical protein; hypothetical protein 1339630 12704827 EcDH1_1242 Escherichia coli DH1 hypothetical protein YP_006091205.1 1339256 R 536056 CDS YP_006091206.1 386594806 12704828 1339735..1340586 1 NC_017625.1 TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ssn:SSON_2508 pyridoxal kinase; pyridoxal kinase 1340586 12704828 EcDH1_1243 Escherichia coli DH1 pyridoxal kinase YP_006091206.1 1339735 D 536056 CDS YP_006091207.1 386594807 12704829 complement(1340629..1341138) 1 NC_017625.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: ssn:SSON_2506 glucose-specific PTS system component; PTS system glucose subfamily transporter subunit IIA 1341138 12704829 EcDH1_1244 Escherichia coli DH1 PTS system glucose subfamily transporter subunit IIA YP_006091207.1 1340629 R 536056 CDS YP_006091208.1 386594808 12704830 complement(1341179..1342906) 1 NC_017625.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: sdy:SDY_2613 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 1342906 12704830 EcDH1_1245 Escherichia coli DH1 phosphoenolpyruvate-protein phosphotransferase YP_006091208.1 1341179 R 536056 CDS YP_006091209.1 386594809 12704831 complement(1342951..1343208) 1 NC_017625.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: esa:ESA_00830 phosphohistidinoprotein-hexose phosphotransferase component of PTS system (HPr); phosphocarrier, Hpr family 1343208 12704831 EcDH1_1246 Escherichia coli DH1 phosphocarrier, Hpr family YP_006091209.1 1342951 R 536056 CDS YP_006091210.1 386594810 12704832 complement(1343592..1344563) 1 NC_017625.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sbc:SbBS512_E2766 cysteine synthase A; cysteine synthase A 1344563 12704832 EcDH1_1247 Escherichia coli DH1 cysteine synthase A YP_006091210.1 1343592 R 536056 CDS YP_006091211.1 386594811 12704833 complement(1344748..1345509) 1 NC_017625.1 PFAM: protein of unknown function DUF540; KEGG: sbc:SbBS512_E2767 CysZ protein; hypothetical protein 1345509 12704833 EcDH1_1248 Escherichia coli DH1 hypothetical protein YP_006091211.1 1344748 R 536056 CDS YP_006091212.1 386594812 12704834 1345739..1346725 1 NC_017625.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; KEGG: sfv:SFV_2464 cell division protein ZipA; cell division protein ZipA 1346725 12704834 EcDH1_1249 Escherichia coli DH1 cell division protein ZipA YP_006091212.1 1345739 D 536056 CDS YP_006091213.1 386594813 12704835 1346796..1348811 1 NC_017625.1 KEGG: ssn:SSON_2500 NAD-dependent DNA ligase LigA; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 1348811 12704835 EcDH1_1250 Escherichia coli DH1 NAD-dependent DNA ligase YP_006091213.1 1346796 D 536056 CDS YP_006091214.1 386594814 12704836 1348813..1349031 1 NC_017625.1 KEGG: sdy:SDY_2607 Z3676 gene product; hypothetical protein 1349031 12704836 EcDH1_1251 Escherichia coli DH1 hypothetical protein YP_006091214.1 1348813 D 536056 CDS YP_006091215.1 386594815 12704837 complement(1349028..1350026) 1 NC_017625.1 PFAM: Bile acid:sodium symporter; KEGG: ssn:SSON_2498 putative cytochrome oxidase; bile acid:sodium symporter 1350026 12704837 EcDH1_1252 Escherichia coli DH1 bile acid:sodium symporter YP_006091215.1 1349028 R 536056 CDS YP_006091216.1 386594816 12704838 1350116..1351042 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E2773 transcriptional regulator, LysR family; LysR family transcriptional regulator 1351042 12704838 EcDH1_1253 Escherichia coli DH1 LysR family transcriptional regulator YP_006091216.1 1350116 D 536056 CDS YP_006091217.1 386594817 12704839 complement(1351081..1351845) 1 NC_017625.1 PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: stm:STM2423 hypothetical protein; nucleoside-specific channel-forming protein Tsx 1351845 12704839 EcDH1_1254 Escherichia coli DH1 nucleoside-specific channel-forming protein Tsx YP_006091217.1 1351081 R 536056 CDS YP_006091218.1 386594818 12704840 1352094..1352927 1 NC_017625.1 TIGRFAM: xanthosine phosphorylase; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: set:SEN2403 xanthosine phosphorylase; xanthosine phosphorylase 1352927 12704840 EcDH1_1255 Escherichia coli DH1 xanthosine phosphorylase YP_006091218.1 1352094 D 536056 CDS YP_006091219.1 386594819 12704841 1352987..1354243 1 NC_017625.1 TIGRFAM: nucleoside transporter; PFAM: nucleoside:H symporter; KEGG: stm:STM2421 xanthosine permease; nucleoside transporter 1354243 12704841 EcDH1_1256 Escherichia coli DH1 nucleoside transporter YP_006091219.1 1352987 D 536056 CDS YP_006091220.1 386594820 12704842 1354296..1354454 1 NC_017625.1 KEGG: stm:STM2420.1n hypothetical protein; hypothetical protein 1354454 12704842 EcDH1_1257 Escherichia coli DH1 hypothetical protein YP_006091220.1 1354296 D 536056 CDS YP_006091221.1 386594821 12704843 1354495..1355379 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_00391 DNA-binding transcriptional activator XapR; LysR family transcriptional regulator 1355379 12704843 EcDH1_1258 Escherichia coli DH1 LysR family transcriptional regulator YP_006091221.1 1354495 D 536056 CDS YP_006091222.1 386594822 12704848 1356300..1357715 1 NC_017625.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sfx:S2605 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 1357715 12704848 EcDH1_1259 Escherichia coli DH1 glutamyl-tRNA synthetase YP_006091222.1 1356300 D 536056 CDS YP_006091223.1 386594823 12704849 complement(1357767..1358159) 1 NC_017625.1 PFAM: protein of unknown function DUF1323; KEGG: sbc:SbBS512_E2780 hypothetical protein; hypothetical protein 1358159 12704849 EcDH1_1260 Escherichia coli DH1 hypothetical protein YP_006091223.1 1357767 R 536056 CDS YP_006091224.1 386594824 12704850 complement(1358161..1358505) 1 NC_017625.1 PFAM: protein of unknown function DUF1323; KEGG: sdy:SDY_2596 hypothetical protein; hypothetical protein 1358505 12704850 EcDH1_1261 Escherichia coli DH1 hypothetical protein YP_006091224.1 1358161 R 536056 CDS YP_006091225.1 386594825 12704853 1359140..1361329 1 NC_017625.1 PFAM: GGDEF domain containing protein; EAL domain protein; MASE1 domain protein; KEGG: sbo:SBO_2421 hypothetical protein; diguanylate cyclase/phosphodiesterase 1361329 12704853 EcDH1_1262 Escherichia coli DH1 diguanylate cyclase/phosphodiesterase YP_006091225.1 1359140 D 536056 CDS YP_006091226.1 386594826 12704854 complement(1361366..1361506) 1 NC_017625.1 hypothetical protein 1361506 12704854 EcDH1_1263 Escherichia coli DH1 hypothetical protein YP_006091226.1 1361366 R 536056 CDS YP_006091227.1 386594827 12704855 complement(1361529..1362641) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_P186 IS186 ORF1; transposase IS4 family protein 1362641 12704855 EcDH1_1264 Escherichia coli DH1 transposase IS4 family protein YP_006091227.1 1361529 R 536056 CDS YP_006091228.1 386594828 12704856 complement(1362728..1363930) 1 NC_017625.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sdy:SDY_2593 permease of transport system for 3 nucleosides; nucleoside transporter 1363930 12704856 EcDH1_1265 Escherichia coli DH1 nucleoside transporter YP_006091228.1 1362728 R 536056 CDS YP_006091229.1 386594829 12704857 1364266..1365504 1 NC_017625.1 TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: sbc:SbBS512_E2760 manganese transport protein MntH; NRAMP family Mn2+/Fe2+ transporter 1365504 12704857 EcDH1_1266 Escherichia coli DH1 NRAMP family Mn2+/Fe2+ transporter YP_006091229.1 1364266 D 536056 CDS YP_006091230.1 386594830 12704858 complement(1365645..1365971) 1 NC_017625.1 KEGG: sbc:SbBS512_E2759 hypothetical protein; hypothetical protein 1365971 12704858 EcDH1_1267 Escherichia coli DH1 hypothetical protein YP_006091230.1 1365645 R 536056 CDS YP_006091231.1 386594831 12704859 complement(1366086..1367342) 1 NC_017625.1 PFAM: Chloride channel core; KEGG: sbc:SbBS512_E2758 chloride transporter, chloride channel (ClC) family; chloride channel protein 1367342 12704859 EcDH1_1268 Escherichia coli DH1 chloride channel protein YP_006091231.1 1366086 R 536056 CDS YP_006091232.1 386594832 12704860 1367546..1368511 1 NC_017625.1 KEGG: sbc:SbBS512_E2757 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase 1368511 12704860 EcDH1_1269 Escherichia coli DH1 glucokinase YP_006091232.1 1367546 D 536056 CDS YP_006091233.1 386594833 12704861 1368730..1369056 1 NC_017625.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sbc:SbBS512_E2756 PTS system, fructose specific IIB subunit; PTS system fructose-specific transporter subunit IIB 1369056 12704861 EcDH1_1270 Escherichia coli DH1 PTS system fructose-specific transporter subunit IIB YP_006091233.1 1368730 D 536056 CDS YP_006091234.1 386594834 12704862 1369078..1370325 1 NC_017625.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: sbc:SbBS512_E2755 PTS system, fructose-like, IIC component; PTS system fructose subfamily transporter subunit IIC 1370325 12704862 EcDH1_1271 Escherichia coli DH1 PTS system fructose subfamily transporter subunit IIC YP_006091234.1 1369078 D 536056 CDS YP_006091235.1 386594835 12704863 1370340..1371425 1 NC_017625.1 PFAM: creatinase; peptidase M24; KEGG: sbo:SBO_2411 putative peptidase; peptidase M24 1371425 12704863 EcDH1_1272 Escherichia coli DH1 peptidase M24 YP_006091235.1 1370340 D 536056 CDS YP_006091236.1 386594836 12704864 1371425..1372462 1 NC_017625.1 PFAM: peptidase M20; peptidase M42 family protein; KEGG: sfv:SFV_2442 exoaminopeptidase; cellulase 1372462 12704864 EcDH1_1273 Escherichia coli DH1 cellulase YP_006091236.1 1371425 D 536056 CDS YP_006091237.1 386594837 12704865 1372487..1374982 1 NC_017625.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoryl transfer system HPr; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: sfv:SFV_2441 putative PTS system enzyme IIA component, enzyme I; phosphoenolpyruvate-protein phosphotransferase 1374982 12704865 EcDH1_1274 Escherichia coli DH1 phosphoenolpyruvate-protein phosphotransferase YP_006091237.1 1372487 D 536056 CDS YP_006091238.1 386594838 12704866 complement(1374985..1375842) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ssn:SSON_2474 putative AraC-type regulatory protein; AraC family transcriptional regulator 1375842 12704866 EcDH1_1275 Escherichia coli DH1 AraC family transcriptional regulator YP_006091238.1 1374985 R 536056 CDS YP_006091239.1 386594839 12704867 complement(1375855..1376589) 1 NC_017625.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sbc:SbBS512_E2750 response regulator; LytTR family two component transcriptional regulator 1376589 12704867 EcDH1_1276 Escherichia coli DH1 LytTR family two component transcriptional regulator YP_006091239.1 1375855 R 536056 CDS YP_006091240.1 386594840 12704868 complement(1376604..1378301) 1 NC_017625.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: sbo:SBO_2406 putative sensor protein; signal transduction histidine kinase LytS 1378301 12704868 EcDH1_1277 Escherichia coli DH1 signal transduction histidine kinase LytS YP_006091240.1 1376604 R 536056 CDS YP_006091241.1 386594841 12704869 1378677..1379915 1 NC_017625.1 PFAM: aminotransferase class I and II; KEGG: ssn:SSON_2470 aminotransferase; class I and II aminotransferase 1379915 12704869 EcDH1_1278 Escherichia coli DH1 class I and II aminotransferase YP_006091241.1 1378677 D 536056 CDS YP_006091242.1 386594842 12704870 complement(1380407..1381327) 1 NC_017625.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: sfv:SFV_2436 lipid A biosynthesis palmitoleoyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 1381327 12704870 EcDH1_1279 Escherichia coli DH1 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_006091242.1 1380407 R 536056 CDS YP_006091243.1 386594843 12704871 1381680..1381922 1 NC_017625.1 KEGG: sdy:SDY_2575 hypothetical protein; hypothetical protein 1381922 12704871 EcDH1_1280 Escherichia coli DH1 hypothetical protein YP_006091243.1 1381680 D 536056 CDS YP_006091244.1 386594844 12704872 complement(1381999..1382274) 1 NC_017625.1 KEGG: ssn:SSON_2467 hypothetical protein; hypothetical protein 1382274 12704872 EcDH1_1281 Escherichia coli DH1 hypothetical protein YP_006091244.1 1381999 R 536056 CDS YP_006091245.1 386594845 12704873 1382570..1383205 1 NC_017625.1 KEGG: sdy:SDY_2573 hypothetical protein; hypothetical protein 1383205 12704873 EcDH1_1282 Escherichia coli DH1 hypothetical protein YP_006091245.1 1382570 D 536056 CDS YP_006091246.1 386594846 12704874 1383718..1384968 1 NC_017625.1 TIGRFAM: formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sbo:SBO_2400 formyl-coenzyme A transferase; formyl-CoA transferase 1384968 12704874 EcDH1_1283 Escherichia coli DH1 formyl-CoA transferase YP_006091246.1 1383718 D 536056 CDS YP_006091247.1 386594847 12704875 1385022..1386716 1 NC_017625.1 TIGRFAM: oxalyl-CoA decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ssn:SSON_2464 putative oxalyl-CoA decarboxylase; oxalyl-CoA decarboxylase 1386716 12704875 EcDH1_1284 Escherichia coli DH1 oxalyl-CoA decarboxylase YP_006091247.1 1385022 D 536056 CDS YP_006091248.1 386594848 12704876 1386786..1387730 1 NC_017625.1 PFAM: Auxin Efflux Carrier; KEGG: sdy:SDY_2570 putative transporter YfdV; auxin efflux carrier family protein 1387730 12704876 EcDH1_1285 Escherichia coli DH1 auxin efflux carrier family protein YP_006091248.1 1386786 D 536056 CDS YP_006091249.1 386594849 12704877 1387804..1388949 1 NC_017625.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sbo:SBO_2397 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 1388949 12704877 EcDH1_1286 Escherichia coli DH1 L-carnitine dehydratase/bile acid-inducible protein F YP_006091249.1 1387804 D 536056 CDS YP_006091250.1 386594850 12704878 complement(1389005..1392598) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 3; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sfv:SFV_2429 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Hpt sensor hybrid histidine kinase 1392598 12704878 EcDH1_1287 Escherichia coli DH1 Hpt sensor hybrid histidine kinase YP_006091250.1 1389005 R 536056 CDS YP_006091251.1 386594851 12704879 complement(1392603..1393217) 1 NC_017625.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sdy:SDY_4477 DNA-binding response regulator in two-component regulatory system with EvgS; LuxR family two component transcriptional regulator 1393217 12704879 EcDH1_1288 Escherichia coli DH1 LuxR family two component transcriptional regulator YP_006091251.1 1392603 R 536056 CDS YP_006091252.1 386594852 12704880 1393633..1394796 1 NC_017625.1 TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E2737 drug resistance MFS transporter, membrane fusion protein (MFP) subunit EmrK; efflux pump membrane protein 1394796 12704880 EcDH1_1289 Escherichia coli DH1 efflux pump membrane protein YP_006091252.1 1393633 D 536056 CDS YP_006091253.1 386594853 12704881 1394796..1396334 1 NC_017625.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_2393 multidrug resistance protein Y; EmrB/QacA subfamily drug resistance transporter 1396334 12704881 EcDH1_1290 Escherichia coli DH1 EmrB/QacA subfamily drug resistance transporter YP_006091253.1 1394796 D 536056 CDS YP_006091254.1 386594854 12704882 complement(1396442..1397770) 1 NC_017625.1 KEGG: ssn:SSON_2457 D-serine dehydratase; TIGRFAM: D-serine ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; D-serine ammonia-lyase 1397770 12704882 EcDH1_1291 Escherichia coli DH1 D-serine ammonia-lyase YP_006091254.1 1396442 R 536056 CDS YP_006091255.1 386594855 12704883 complement(1397788..1399125) 1 NC_017625.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: stm:STM3801 permease DsdX; gluconate transporter 1399125 12704883 EcDH1_1292 Escherichia coli DH1 gluconate transporter YP_006091255.1 1397788 R 536056 CDS YP_006091256.1 386594856 12704884 1399343..1400278 1 NC_017625.1 TIGRFAM: D-serine deaminase transcriptional activator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_00019 DNA-binding transcriptional regulator DsdC; LysR family transcriptional regulator 1400278 12704884 EcDH1_1293 Escherichia coli DH1 LysR family transcriptional regulator YP_006091256.1 1399343 D 536056 CDS YP_006091257.1 386594857 12704885 complement(1400462..1400662) 1 NC_017625.1 hypothetical protein 1400662 12704885 EcDH1_1294 Escherichia coli DH1 hypothetical protein YP_006091257.1 1400462 R 536056 CDS YP_006091258.1 386594858 12704886 complement(1400794..1401099) 1 NC_017625.1 KEGG: sfl:SF0298 hypothetical protein; hypothetical protein 1401099 12704886 EcDH1_1295 Escherichia coli DH1 hypothetical protein YP_006091258.1 1400794 R 536056 CDS YP_006091259.1 386594859 12704887 complement(1401099..1401461) 1 NC_017625.1 KEGG: sfl:SF0299 hypothetical protein; hypothetical protein 1401461 12704887 EcDH1_1296 Escherichia coli DH1 hypothetical protein YP_006091259.1 1401099 R 536056 CDS YP_006091260.1 386594860 12704888 complement(1401452..1401988) 1 NC_017625.1 KEGG: set:SEN1960 phage protein; phage protein 1401988 12704888 EcDH1_1297 Escherichia coli DH1 phage protein YP_006091260.1 1401452 R 536056 CDS YP_006091261.1 386594861 12704889 complement(1402116..1402940) 1 NC_017625.1 KEGG: sed:SeD_A2294 hypothetical protein; hypothetical protein 1402940 12704889 EcDH1_1298 Escherichia coli DH1 hypothetical protein YP_006091261.1 1402116 R 536056 CDS YP_006091262.1 386594862 12704890 complement(1403006..1403368) 1 NC_017625.1 KEGG: sew:SeSA_A4443 hypothetical protein; hypothetical protein 1403368 12704890 EcDH1_1299 Escherichia coli DH1 hypothetical protein YP_006091262.1 1403006 R 536056 CDS YP_006091263.1 386594863 12704892 1404097..1404585 1 NC_017625.1 KEGG: set:SEN1951 phage protein; phage protein 1404585 12704892 EcDH1_1301 Escherichia coli DH1 phage protein YP_006091263.1 1404097 D 536056 CDS YP_006091264.1 386594864 12704893 1404585..1404860 1 NC_017625.1 TIGRFAM: phage N-6-adenine-methyltransferase; PFAM: DNA N-6-adenine-methyltransferase; KEGG: sbc:SbBS512_E2156 phage N-6-adenine-methyltransferase; phage N-6-adenine-methyltransferase 1404860 12704893 EcDH1_1302 Escherichia coli DH1 phage N-6-adenine-methyltransferase YP_006091264.1 1404585 D 536056 CDS YP_006091265.1 386594865 12704894 1404826..1405428 1 NC_017625.1 KEGG: sfx:S0319 hypothetical protein; hypothetical protein 1405428 12704894 EcDH1_1303 Escherichia coli DH1 hypothetical protein YP_006091265.1 1404826 D 536056 CDS YP_006091266.1 386594866 12704895 1405455..1405895 1 NC_017625.1 PFAM: tail assembly chaperone gp38; KEGG: stt:t3435 hypothetical protein; tail assembly chaperone gp38 1405895 12704895 EcDH1_1304 Escherichia coli DH1 tail assembly chaperone gp38 YP_006091266.1 1405455 D 536056 CDS YP_006091267.1 386594867 12704896 complement(1405867..1406211) 1 NC_017625.1 PFAM: tail assembly chaperone gp38; KEGG: stt:t3434 hypothetical protein; tail assembly chaperone gp38 1406211 12704896 EcDH1_1305 Escherichia coli DH1 tail assembly chaperone gp38 YP_006091267.1 1405867 R 536056 CDS YP_006091268.1 386594868 12704897 complement(1406510..1407841) 1 NC_017625.1 KEGG: ckl:CKL_1571 hypothetical protein; hypothetical protein 1407841 12704897 EcDH1_1306 Escherichia coli DH1 hypothetical protein YP_006091268.1 1406510 R 536056 CDS YP_006091269.1 386594869 12704898 complement(1407838..1408758) 1 NC_017625.1 PFAM: glycosyl transferase family 2; KEGG: sfv:SFV_0257 putative bactoprenol glucosyl transferase; Ribonuclease III 1408758 12704898 EcDH1_1307 Escherichia coli DH1 Ribonuclease III YP_006091269.1 1407838 R 536056 CDS YP_006091270.1 386594870 12704899 complement(1408755..1409117) 1 NC_017625.1 PFAM: GtrA family protein; KEGG: sfv:SFV_0258 bactoprenol-linked glucose translocase; GtrA family protein 1409117 12704899 EcDH1_1308 Escherichia coli DH1 GtrA family protein YP_006091270.1 1408755 R 536056 CDS YP_006091271.1 386594871 12704900 complement(1409270..1410427) 1 NC_017625.1 PFAM: integrase family protein; KEGG: ssn:SSON_2406 putative prophage Sf6-like integrase; integrase family protein 1410427 12704900 EcDH1_1309 Escherichia coli DH1 integrase family protein YP_006091271.1 1409270 R 536056 CDS YP_006091272.1 386594872 12704902 complement(1410739..1411671) 1 NC_017625.1 PFAM: formate/nitrite transporter; KEGG: sdy:SDY_2551 putative transport; formate/nitrite transporter 1411671 12704902 EcDH1_1310 Escherichia coli DH1 formate/nitrite transporter YP_006091272.1 1410739 R 536056 CDS YP_006091273.1 386594873 12704903 1411965..1412720 1 NC_017625.1 PFAM: VacJ family lipoprotein; KEGG: sdy:SDY_2550 lipoprotein precursor; VacJ family lipoprotein 1412720 12704903 EcDH1_1311 Escherichia coli DH1 VacJ family lipoprotein YP_006091273.1 1411965 D 536056 CDS YP_006091274.1 386594874 12704904 complement(1412902..1413960) 1 NC_017625.1 KEGG: sfx:S2558 hypothetical protein; hypothetical protein 1413960 12704904 EcDH1_1312 Escherichia coli DH1 hypothetical protein YP_006091274.1 1412902 R 536056 CDS YP_006091275.1 386594875 12704905 complement(1414326..1415666) 1 NC_017625.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: ssn:SSON_2400 long-chain fatty acid outer membrane transporter; aromatic hydrocarbon degradation membrane protein 1415666 12704905 EcDH1_1313 Escherichia coli DH1 aromatic hydrocarbon degradation membrane protein YP_006091275.1 1414326 R 536056 CDS YP_006091276.1 386594876 12704906 1416038..1416322 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E2723 hypothetical protein; hypothetical protein 1416322 12704906 EcDH1_1314 Escherichia coli DH1 hypothetical protein YP_006091276.1 1416038 D 536056 CDS YP_006091277.1 386594877 12704907 1416503..1417813 1 NC_017625.1 KEGG: sbc:SbBS512_E2722 acetyl-CoA C-acyltransferase FadI; TIGRFAM: acetyl-CoA acetyltransferase; acetyl-CoA C-acyltransferase FadI; PFAM: Thiolase; acetyl-CoA C-acyltransferase FadI 1417813 12704907 EcDH1_1315 Escherichia coli DH1 acetyl-CoA C-acyltransferase FadI YP_006091277.1 1416503 D 536056 CDS YP_006091278.1 386594878 12704908 1417813..1419957 1 NC_017625.1 TIGRFAM: fatty acid oxidation complex, alpha subunit FadJ; PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E2721 fatty oxidation complex, alpha subunit FadJ; fatty acid oxidation complex subunit FadJ 1419957 12704908 EcDH1_1316 Escherichia coli DH1 fatty acid oxidation complex subunit FadJ YP_006091278.1 1417813 D 536056 CDS YP_006091279.1 386594879 12704909 1420160..1420645 1 NC_017625.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: sbc:SbBS512_E2719 phosphohistidine phosphatase SixA; phosphohistidine phosphatase, SixA 1420645 12704909 EcDH1_1317 Escherichia coli DH1 phosphohistidine phosphatase, SixA YP_006091279.1 1420160 D 536056 CDS YP_006091280.1 386594880 12704910 1421326..1421889 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sfx:S2550 putative fimbrial-like protein; Fimbrial protein 1421889 12704910 EcDH1_1318 Escherichia coli DH1 Fimbrial protein YP_006091280.1 1421326 D 536056 CDS YP_006091281.1 386594881 12704912 1424636..1425388 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: sfv:SFV_2405 putative chaperone; Pili assembly chaperone, N-terminal 1425388 12704912 EcDH1_1320 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006091281.1 1424636 D 536056 CDS YP_006091282.1 386594882 12704913 1425388..1425900 1 NC_017625.1 KEGG: sbc:SbBS512_E2715 putative minor fimbrial subunit; putative minor fimbrial subunit 1425900 12704913 EcDH1_1321 Escherichia coli DH1 putative minor fimbrial subunit YP_006091282.1 1425388 D 536056 CDS YP_006091283.1 386594883 12704914 1425897..1426385 1 NC_017625.1 KEGG: sdy:SDY_2533 hypothetical protein; hypothetical protein 1426385 12704914 EcDH1_1322 Escherichia coli DH1 hypothetical protein YP_006091283.1 1425897 D 536056 CDS YP_006091284.1 386594884 12704915 1426382..1426921 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sdy:SDY_2532 putative fimbrial-like protein; Fimbrial protein 1426921 12704915 EcDH1_1323 Escherichia coli DH1 Fimbrial protein YP_006091284.1 1426382 D 536056 CDS YP_006091285.1 386594885 12704916 1426923..1427744 1 NC_017625.1 KEGG: ssn:SSON_2390 hypothetical protein; hypothetical protein 1427744 12704916 EcDH1_1324 Escherichia coli DH1 hypothetical protein YP_006091285.1 1426923 D 536056 CDS YP_006091286.1 386594886 12704917 complement(1427815..1428366) 1 NC_017625.1 PFAM: Smr protein/MutS2; KEGG: sbc:SbBS512_E2709 Smr domain protein; Smr protein/MutS2 1428366 12704917 EcDH1_1325 Escherichia coli DH1 Smr protein/MutS2 YP_006091286.1 1427815 R 536056 CDS YP_006091287.1 386594887 12704918 1428532..1429464 1 NC_017625.1 KEGG: sfv:SFV_2400 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12; HemK family modification methylase 1429464 12704918 EcDH1_1326 Escherichia coli DH1 HemK family modification methylase YP_006091287.1 1428532 D 536056 CDS YP_006091288.1 386594888 12704919 1429499..1430584 1 NC_017625.1 PFAM: chorismate synthase; KEGG: sdy:SDY_2528 chorismate synthase; Chorismate synthase 1430584 12704919 EcDH1_1327 Escherichia coli DH1 Chorismate synthase YP_006091288.1 1429499 D 536056 CDS YP_006091289.1 386594889 12704920 1430588..1431412 1 NC_017625.1 PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: sfv:SFV_2397 penicillin-insensitive murein endopeptidase; peptidase U6 penicillin-insensitive murein endopeptidase 1431412 12704920 EcDH1_1328 Escherichia coli DH1 peptidase U6 penicillin-insensitive murein endopeptidase YP_006091289.1 1430588 D 536056 CDS YP_006091290.1 386594890 12704921 1431412..1432221 1 NC_017625.1 PFAM: protein of unknown function DUF81; KEGG: sbc:SbBS512_E2705 hypothetical protein; hypothetical protein 1432221 12704921 EcDH1_1329 Escherichia coli DH1 hypothetical protein YP_006091290.1 1431412 D 536056 CDS YP_006091291.1 386594891 12704922 1432221..1432769 1 NC_017625.1 PFAM: protein of unknown function DUF462; KEGG: sdy:SDY_2525 putative transporting ATPase; hypothetical protein 1432769 12704922 EcDH1_1330 Escherichia coli DH1 hypothetical protein YP_006091291.1 1432221 D 536056 CDS YP_006091292.1 386594892 12704923 1432803..1433081 1 NC_017625.1 PFAM: YfcL protein; KEGG: sdy:SDY_2524 hypothetical protein; hypothetical protein 1433081 12704923 EcDH1_1331 Escherichia coli DH1 hypothetical protein YP_006091292.1 1432803 D 536056 CDS YP_006091293.1 386594893 12704924 complement(1433202..1435208) 1 NC_017625.1 TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: sbc:SbBS512_E2702 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC 1435208 12704924 EcDH1_1332 Escherichia coli DH1 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC YP_006091293.1 1433202 R 536056 CDS YP_006091294.1 386594894 12704925 1435367..1436587 1 NC_017625.1 PFAM: Beta-ketoacyl synthase; KEGG: sbo:SBO_2360 3-oxoacyl-(acyl carrier protein) synthase I; Beta-ketoacyl synthase 1436587 12704925 EcDH1_1333 Escherichia coli DH1 Beta-ketoacyl synthase YP_006091294.1 1435367 D 536056 CDS YP_006091295.1 386594895 12704926 1436852..1438030 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2380 hypothetical protein; major facilitator superfamily protein 1438030 12704926 EcDH1_1334 Escherichia coli DH1 major facilitator superfamily protein YP_006091295.1 1436852 D 536056 CDS YP_006091296.1 386594896 12704927 complement(1438027..1439022) 1 NC_017625.1 KEGG: sbo:SBO_2358 predicted flagella assembly protein; flagella assembly protein 1439022 12704927 EcDH1_1335 Escherichia coli DH1 flagella assembly protein YP_006091296.1 1438027 R 536056 CDS YP_006091297.1 386594897 12704928 1439121..1440257 1 NC_017625.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E2698 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region 1440257 12704928 EcDH1_1336 Escherichia coli DH1 D-isomer specific 2-hydroxyacid dehydrogenase catalytic region YP_006091297.1 1439121 D 536056 CDS YP_006091298.1 386594898 12704929 1440323..1441336 1 NC_017625.1 PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: sdy:SDY_2518 hypothetical protein; Aspartate-semialdehyde dehydrogenase 1441336 12704929 EcDH1_1337 Escherichia coli DH1 Aspartate-semialdehyde dehydrogenase YP_006091298.1 1440323 D 536056 CDS YP_006091299.1 386594899 12704930 1441336..1442148 1 NC_017625.1 KEGG: sdy:SDY_2517 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1442148 12704930 EcDH1_1338 Escherichia coli DH1 tRNA pseudouridine synthase A YP_006091299.1 1441336 D 536056 CDS YP_006091300.1 386594900 12704931 1442231..1442890 1 NC_017625.1 PFAM: SNARE associated Golgi protein; KEGG: sfv:SFV_2386 hypothetical protein; hypothetical protein 1442890 12704931 EcDH1_1339 Escherichia coli DH1 hypothetical protein YP_006091300.1 1442231 D 536056 CDS YP_006091301.1 386594901 12704932 1443046..1443960 1 NC_017625.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: ssn:SSON_2374 acetyl-CoA carboxylase subunit beta; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1443960 12704932 EcDH1_1340 Escherichia coli DH1 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_006091301.1 1443046 D 536056 CDS YP_006091302.1 386594902 12704933 1444030..1445298 1 NC_017625.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfv:SFV_2384 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1445298 12704933 EcDH1_1341 Escherichia coli DH1 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_006091302.1 1444030 D 536056 CDS YP_006091303.1 386594903 12704934 1445288..1445950 1 NC_017625.1 PFAM: Sporulation domain protein; KEGG: sbc:SbBS512_E2692 sporulation and cell division repeat protein; Phosphogluconate dehydratase 1445950 12704934 EcDH1_1342 Escherichia coli DH1 Phosphogluconate dehydratase YP_006091303.1 1445288 D 536056 CDS YP_006091304.1 386594904 12704935 1446209..1446697 1 NC_017625.1 PFAM: Colicin V production protein; colicin V production protein 1446697 12704935 EcDH1_1343 Escherichia coli DH1 colicin V production protein YP_006091304.1 1446209 D 536056 CDS YP_006091305.1 386594905 12704936 1446734..1448251 1 NC_017625.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: sbc:SbBS512_E2690 amidophosphoribosyltransferase; amidophosphoribosyltransferase 1448251 12704936 EcDH1_1344 Escherichia coli DH1 amidophosphoribosyltransferase YP_006091305.1 1446734 D 536056 CDS YP_006091306.1 386594906 12704937 1448346..1448915 1 NC_017625.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: sdy:SDY_2510 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1448915 12704937 EcDH1_1345 Escherichia coli DH1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_006091306.1 1448346 D 536056 CDS YP_006091307.1 386594907 12704938 1449181..1449963 1 NC_017625.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbc:SbBS512_E2688 lysine-arginine-ornithine-binding periplasmic protein; cationic amino acid ABC transporter substrate-binding protein 1449963 12704938 EcDH1_1346 Escherichia coli DH1 cationic amino acid ABC transporter substrate-binding protein YP_006091307.1 1449181 D 536056 CDS YP_006091308.1 386594908 12704939 1450184..1450966 1 NC_017625.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbc:SbBS512_E2687 histidine ABC transporter, periplasmic histidine-binding protein; cationic amino acid ABC transporter substrate-binding protein 1450966 12704939 EcDH1_1347 Escherichia coli DH1 cationic amino acid ABC transporter substrate-binding protein YP_006091308.1 1450184 D 536056 CDS YP_006091309.1 386594909 12704940 1451056..1451742 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_2507 histidine transport system permease protein; polar amino acid ABC transporter inner membrane subunit 1451742 12704940 EcDH1_1348 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006091309.1 1451056 D 536056 CDS YP_006091310.1 386594910 12704941 1451739..1452455 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_2506 histidine transport, membrane protein M; polar amino acid ABC transporter inner membrane subunit 1452455 12704941 EcDH1_1349 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006091310.1 1451739 D 536056 CDS YP_006091311.1 386594911 12704942 1452463..1453236 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2684 histidine ABC transporter, ATP-binding protein; ABC transporter 1453236 12704942 EcDH1_1350 Escherichia coli DH1 ABC transporter YP_006091311.1 1452463 D 536056 CDS YP_006091312.1 386594912 12704943 1453433..1454323 1 NC_017625.1 PFAM: putative transposase YhgA family protein; KEGG: sfv:SFV_2372 hypothetical protein; putative transposase YhgA family protein 1454323 12704943 EcDH1_1351 Escherichia coli DH1 putative transposase YhgA family protein YP_006091312.1 1453433 D 536056 CDS YP_006091313.1 386594913 12704944 complement(1454371..1455264) 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; domain of unknown function DUF1731; KEGG: sbo:SBO_2339 putative sugar nucleotide epimerase; hypothetical protein 1455264 12704944 EcDH1_1352 Escherichia coli DH1 hypothetical protein YP_006091313.1 1454371 R 536056 CDS YP_006091314.1 386594914 12704945 complement(1455285..1455647) 1 NC_017625.1 PFAM: dihydroneopterin aldolase; KEGG: sdy:SDY_2500 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; dihydroneopterin aldolase 1455647 12704945 EcDH1_1353 Escherichia coli DH1 dihydroneopterin aldolase YP_006091314.1 1455285 R 536056 CDS YP_006091315.1 386594915 12704946 complement(1455704..1456351) 1 NC_017625.1 PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E2678 glutathione S-transferase; glutathione S-transferase 1456351 12704946 EcDH1_1354 Escherichia coli DH1 glutathione S-transferase YP_006091315.1 1455704 R 536056 CDS YP_006091316.1 386594916 12704947 1456487..1457131 1 NC_017625.1 PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E2677 glutathione S-transferase domain protein; glutathione S-transferase 1457131 12704947 EcDH1_1355 Escherichia coli DH1 glutathione S-transferase YP_006091316.1 1456487 D 536056 CDS YP_006091317.1 386594917 12704948 1457187..1457738 1 NC_017625.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sbc:SbBS512_E2676 phosphodiesterase, YfcE family; phosphodiesterase 1457738 12704948 EcDH1_1356 Escherichia coli DH1 phosphodiesterase YP_006091317.1 1457187 D 536056 CDS YP_006091318.1 386594918 12704949 1457796..1458338 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E2675 hydrolase, NUDIX family protein; NUDIX hydrolase 1458338 12704949 EcDH1_1357 Escherichia coli DH1 NUDIX hydrolase YP_006091318.1 1457796 D 536056 CDS YP_006091319.1 386594919 12704950 complement(1458371..1459849) 1 NC_017625.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: sdy:SDY_2494 hypothetical protein; C4-dicarboxylate anaerobic carrier 1459849 12704950 EcDH1_1358 Escherichia coli DH1 C4-dicarboxylate anaerobic carrier YP_006091319.1 1458371 R 536056 CDS YP_006091320.1 386594920 12704951 complement(1460081..1462225) 1 NC_017625.1 KEGG: sbc:SbBS512_E2673 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; phosphate acetyltransferase 1462225 12704951 EcDH1_1359 Escherichia coli DH1 phosphate acetyltransferase YP_006091320.1 1460081 R 536056 CDS YP_006091321.1 386594921 12704952 complement(1462300..1463502) 1 NC_017625.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: sbc:SbBS512_E2672 acetate kinase; acetate kinase 1463502 12704952 EcDH1_1360 Escherichia coli DH1 acetate kinase YP_006091321.1 1462300 R 536056 CDS YP_006091322.1 386594922 12704953 1463840..1464295 1 NC_017625.1 PFAM: protein of unknown function DUF412; KEGG: sdy:SDY_2491 hypothetical protein; hypothetical protein 1464295 12704953 EcDH1_1361 Escherichia coli DH1 hypothetical protein YP_006091322.1 1463840 D 536056 CDS YP_006091323.1 386594923 12704954 1464378..1464872 1 NC_017625.1 PFAM: YfbU family protein; KEGG: sdy:SDY_2490 hypothetical protein; YfbU family protein 1464872 12704954 EcDH1_1362 Escherichia coli DH1 YfbU family protein YP_006091323.1 1464378 D 536056 CDS YP_006091324.1 386594924 12704955 1464883..1465533 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfv:SFV_2360 putative phosphatase; HAD-superfamily hydrolase 1465533 12704955 EcDH1_1363 Escherichia coli DH1 HAD-superfamily hydrolase YP_006091324.1 1464883 D 536056 CDS YP_006091325.1 386594925 12704956 1465620..1467452 1 NC_017625.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ssn:SSON_2349 putative transport protein; citrate transporter 1467452 12704956 EcDH1_1364 Escherichia coli DH1 citrate transporter YP_006091325.1 1465620 D 536056 CDS YP_006091326.1 386594926 12704957 complement(1467511..1468110) 1 NC_017625.1 KEGG: sfv:SFV_2358 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1468110 12704957 EcDH1_1365 Escherichia coli DH1 metal dependent phosphohydrolase YP_006091326.1 1467511 R 536056 CDS YP_006091327.1 386594927 12704958 complement(1468194..1469411) 1 NC_017625.1 PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E2666 aminotransferase, classes I and II; class I and II aminotransferase 1469411 12704958 EcDH1_1366 Escherichia coli DH1 class I and II aminotransferase YP_006091327.1 1468194 R 536056 CDS YP_006091328.1 386594928 12704959 1470331..1471269 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E2665 transcriptional regulator LrhA; LysR family transcriptional regulator 1471269 12704959 EcDH1_1367 Escherichia coli DH1 LysR family transcriptional regulator YP_006091328.1 1470331 D 536056 CDS YP_006091329.1 386594929 12704960 complement(1471473..1471637) 1 NC_017625.1 hypothetical protein 1471637 12704960 EcDH1_1368 Escherichia coli DH1 hypothetical protein YP_006091329.1 1471473 R 536056 CDS YP_006091330.1 386594930 12704961 1471900..1472343 1 NC_017625.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: sdy:SDY_2484 NADH dehydrogenase subunit A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1472343 12704961 EcDH1_1369 Escherichia coli DH1 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_006091330.1 1471900 D 536056 CDS YP_006091331.1 386594931 12704962 1472359..1473021 1 NC_017625.1 KEGG: sbc:SbBS512_E2663 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit B 1473021 12704962 EcDH1_1370 Escherichia coli DH1 NADH-quinone oxidoreductase subunit B YP_006091331.1 1472359 D 536056 CDS YP_006091332.1 386594932 12704963 1473115..1474917 1 NC_017625.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sdy:SDY_2482 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; NADH dehydrogenase I subunit D 1474917 12704963 EcDH1_1371 Escherichia coli DH1 NADH dehydrogenase I subunit D YP_006091332.1 1473115 D 536056 CDS YP_006091333.1 386594933 12704964 1474920..1475420 1 NC_017625.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: sbc:SbBS512_E2661 NADH-quinone oxidoreductase, E subunit; NADH-quinone oxidoreductase subunit E 1475420 12704964 EcDH1_1372 Escherichia coli DH1 NADH-quinone oxidoreductase subunit E YP_006091333.1 1474920 D 536056 CDS YP_006091334.1 386594934 12704965 1475417..1476754 1 NC_017625.1 KEGG: sdy:SDY_2480 NADH dehydrogenase I subunit F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F 1476754 12704965 EcDH1_1373 Escherichia coli DH1 NADH-quinone oxidoreductase subunit F YP_006091334.1 1475417 D 536056 CDS YP_006091335.1 386594935 12704966 1476807..1479533 1 NC_017625.1 TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; NADH-quinone oxidoreductase chain G; KEGG: sbo:SBO_2316 NADH dehydrogenase subunit G; NADH-quinone oxidoreductase subunit G 1479533 12704966 EcDH1_1374 Escherichia coli DH1 NADH-quinone oxidoreductase subunit G YP_006091335.1 1476807 D 536056 CDS YP_006091336.1 386594936 12704967 1479530..1480507 1 NC_017625.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sdy:SDY_2478 NADH dehydrogenase subunit H; NADH dehydrogenase (quinone) 1480507 12704967 EcDH1_1375 Escherichia coli DH1 NADH dehydrogenase (quinone) YP_006091336.1 1479530 D 536056 CDS YP_006091337.1 386594937 12704968 1480522..1481064 1 NC_017625.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2657 NADH-quinone oxidoreductase, I subunit; NADH-quinone oxidoreductase subunit I 1481064 12704968 EcDH1_1376 Escherichia coli DH1 NADH-quinone oxidoreductase subunit I YP_006091337.1 1480522 D 536056 CDS YP_006091338.1 386594938 12704969 1481076..1481630 1 NC_017625.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: sdy:SDY_2476 NADH dehydrogenase subunit J; NADH dehydrogenase (quinone) 1481630 12704969 EcDH1_1377 Escherichia coli DH1 NADH dehydrogenase (quinone) YP_006091338.1 1481076 D 536056 CDS YP_006091339.1 386594939 12704970 1481627..1481929 1 NC_017625.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cko:CKO_00517 NADH dehydrogenase subunit K; NADH-ubiquinone oxidoreductase chain 4L 1481929 12704970 EcDH1_1378 Escherichia coli DH1 NADH-ubiquinone oxidoreductase chain 4L YP_006091339.1 1481627 D 536056 CDS YP_006091340.1 386594940 12704971 1481926..1483767 1 NC_017625.1 KEGG: sfv:SFV_2345 NADH dehydrogenase subunit L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1483767 12704971 EcDH1_1379 Escherichia coli DH1 proton-translocating NADH-quinone oxidoreductase subunit L YP_006091340.1 1481926 D 536056 CDS YP_006091341.1 386594941 12704972 1483931..1485460 1 NC_017625.1 KEGG: sfv:SFV_2344 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1485460 12704972 EcDH1_1380 Escherichia coli DH1 proton-translocating NADH-quinone oxidoreductase subunit M YP_006091341.1 1483931 D 536056 CDS YP_006091342.1 386594942 12704973 1485467..1486924 1 NC_017625.1 KEGG: sfx:S2487 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain N 1486924 12704973 EcDH1_1381 Escherichia coli DH1 proton-translocating NADH-quinone oxidoreductase, chain N YP_006091342.1 1485467 D 536056 CDS YP_006091343.1 386594943 12704974 complement(1487008..1487856) 1 NC_017625.1 hypothetical protein 1487856 12704974 EcDH1_1382 Escherichia coli DH1 hypothetical protein YP_006091343.1 1487008 R 536056 CDS YP_006091344.1 386594944 12704975 complement(1487915..1488337) 1 NC_017625.1 KEGG: rpe:RPE_3539 hypothetical protein; hypothetical protein 1488337 12704975 EcDH1_1383 Escherichia coli DH1 hypothetical protein YP_006091344.1 1487915 R 536056 CDS YP_006091345.1 386594945 12704976 1488546..1489262 1 NC_017625.1 KEGG: pfl:PFL_6130 hypothetical protein; hypothetical protein 1489262 12704976 EcDH1_1384 Escherichia coli DH1 hypothetical protein YP_006091345.1 1488546 D 536056 CDS YP_006091346.1 386594946 12704977 complement(1489535..1490038) 1 NC_017625.1 PFAM: Domain of unknown function DUF1877; KEGG: sdy:SDY_2471 hypothetical protein; hypothetical protein 1490038 12704977 EcDH1_1385 Escherichia coli DH1 hypothetical protein YP_006091346.1 1489535 R 536056 CDS YP_006091347.1 386594947 12704978 complement(1490141..1491112) 1 NC_017625.1 PFAM: peptidase M28; KEGG: sfu:Sfum_3053 peptidase M28; peptidase M28 1491112 12704978 EcDH1_1386 Escherichia coli DH1 peptidase M28 YP_006091347.1 1490141 R 536056 CDS YP_006091348.1 386594948 12704979 1491250..1492977 1 NC_017625.1 PFAM: von Willebrand factor type A; KEGG: set:SEN2297 lipoprotein; von Willebrand factor type A 1492977 12704979 EcDH1_1387 Escherichia coli DH1 von Willebrand factor type A YP_006091348.1 1491250 D 536056 CDS YP_006091349.1 386594949 12704980 complement(1493048..1494256) 1 NC_017625.1 PFAM: peptidase C48 SUMO/Sentrin/Ubl1; KEGG: ses:SARI_00605 deubiquitinase; peptidase C48 SUMO/Sentrin/Ubl1 1494256 12704980 EcDH1_1388 Escherichia coli DH1 peptidase C48 SUMO/Sentrin/Ubl1 YP_006091349.1 1493048 R 536056 CDS YP_006091350.1 386594950 12704981 complement(1494447..1495382) 1 NC_017625.1 TIGRFAM: ribonuclease BN; ribonuclease Z; PFAM: beta-lactamase domain protein; KEGG: sfv:SFV_2339 ribonuclease Z; ribonuclease BN 1495382 12704981 EcDH1_1389 Escherichia coli DH1 ribonuclease BN YP_006091350.1 1494447 R 536056 CDS YP_006091351.1 386594951 12704982 1495429..1495890 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfv:SFV_2338 hypothetical protein; N-acetyltransferase GCN5 1495890 12704982 EcDH1_1390 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006091351.1 1495429 D 536056 CDS YP_006091352.1 386594952 12704983 1495945..1496250 1 NC_017625.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_2462 hypothetical protein; hypothetical protein 1496250 12704983 EcDH1_1391 Escherichia coli DH1 hypothetical protein YP_006091352.1 1495945 D 536056 CDS YP_006091353.1 386594953 12704984 1496329..1497624 1 NC_017625.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: sfx:S2478 menaquinone-specific isochorismate synthase; isochorismate synthase 1497624 12704984 EcDH1_1392 Escherichia coli DH1 isochorismate synthase YP_006091353.1 1496329 D 536056 CDS YP_006091354.1 386594954 12704985 1497713..1499383 1 NC_017625.1 KEGG: sfv:SFV_2335 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 1499383 12704985 EcDH1_1393 Escherichia coli DH1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_006091354.1 1497713 D 536056 CDS YP_006091355.1 386594955 12704986 1499380..1500138 1 NC_017625.1 PFAM: alpha/beta hydrolase fold; KEGG: sbo:SBO_2300 acyl-CoA thioester hydrolase YfbB; alpha/beta hydrolase fold protein 1500138 12704986 EcDH1_1394 Escherichia coli DH1 alpha/beta hydrolase fold protein YP_006091355.1 1499380 D 536056 CDS YP_006091356.1 386594956 12704987 1500153..1501010 1 NC_017625.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sbc:SbBS512_E2641 naphthoate synthase; naphthoate synthase 1501010 12704987 EcDH1_1395 Escherichia coli DH1 naphthoate synthase YP_006091356.1 1500153 D 536056 CDS YP_006091357.1 386594957 12704988 1501010..1501972 1 NC_017625.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sdy:SDY_2457 O-succinylbenzoate synthase; mandelate racemase/muconate lactonizing protein 1501972 12704988 EcDH1_1396 Escherichia coli DH1 mandelate racemase/muconate lactonizing protein YP_006091357.1 1501010 D 536056 CDS YP_006091358.1 386594958 12704989 1501969..1503324 1 NC_017625.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sdy:SDY_2456 O-succinylbenzoic acid--CoA ligase; o-succinylbenzoate--CoA ligase 1503324 12704989 EcDH1_1397 Escherichia coli DH1 o-succinylbenzoate--CoA ligase YP_006091358.1 1501969 D 536056 CDS YP_006091359.1 386594959 12704990 1503434..1503700 1 NC_017625.1 KEGG: ssn:SSON_2320 polymyxin resistance protein B; polymyxin resistance protein B 1503700 12704990 EcDH1_1398 Escherichia coli DH1 polymyxin resistance protein B YP_006091359.1 1503434 D 536056 CDS YP_006091360.1 386594960 12704991 complement(1503694..1504080) 1 NC_017625.1 KEGG: ssn:SSON_2319 hypothetical protein; hypothetical protein 1504080 12704991 EcDH1_1399 Escherichia coli DH1 hypothetical protein YP_006091360.1 1503694 R 536056 CDS YP_006091361.1 386594961 12704992 complement(1504080..1504415) 1 NC_017625.1 PFAM: small multidrug resistance protein; KEGG: sbc:SbBS512_E2634 multidrug resistance protein, SMR family; small multidrug resistance protein 1504415 12704992 EcDH1_1400 Escherichia coli DH1 small multidrug resistance protein YP_006091361.1 1504080 R 536056 CDS YP_006091362.1 386594962 12704993 complement(1504412..1506064) 1 NC_017625.1 PFAM: glycosyl transferase family 39; KEGG: sbo:SBO_2294 4-amino-4-deoxy-L-arabinose transferase; glycosyl transferase family protein 1506064 12704993 EcDH1_1401 Escherichia coli DH1 glycosyl transferase family protein YP_006091362.1 1504412 R 536056 CDS YP_006091363.1 386594963 12704994 complement(1506064..1506954) 1 NC_017625.1 PFAM: polysaccharide deacetylase; KEGG: ssn:SSON_2317 hypothetical protein; polysaccharide deacetylase 1506954 12704994 EcDH1_1402 Escherichia coli DH1 polysaccharide deacetylase YP_006091363.1 1506064 R 536056 CDS YP_006091364.1 386594964 12704995 complement(1506951..1508933) 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; formyl transferase domain protein; KEGG: sbo:SBO_2292 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; NAD-dependent epimerase/dehydratase 1508933 12704995 EcDH1_1403 Escherichia coli DH1 NAD-dependent epimerase/dehydratase YP_006091364.1 1506951 R 536056 CDS YP_006091365.1 386594965 12704996 complement(1508933..1509901) 1 NC_017625.1 PFAM: glycosyl transferase family 2; KEGG: sbo:SBO_2291 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; family 2 glycosyl transferase 1509901 12704996 EcDH1_1404 Escherichia coli DH1 family 2 glycosyl transferase YP_006091365.1 1508933 R 536056 CDS YP_006091366.1 386594966 12704997 complement(1509905..1511044) 1 NC_017625.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sfv:SFV_2323 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1511044 12704997 EcDH1_1405 Escherichia coli DH1 DegT/DnrJ/EryC1/StrS aminotransferase YP_006091366.1 1509905 R 536056 CDS YP_006091367.1 386594967 12704998 1511352..1511954 1 NC_017625.1 PFAM: Phosphoglycerate mutase; KEGG: ssn:SSON_2313 protein induced by aluminum; phosphoglycerate mutase 1511954 12704998 EcDH1_1406 Escherichia coli DH1 phosphoglycerate mutase YP_006091367.1 1511352 D 536056 CDS YP_006091368.1 386594968 12704999 complement(1511993..1512418) 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sfv:SFV_2321 hypothetical protein; NUDIX hydrolase 1512418 12704999 EcDH1_1407 Escherichia coli DH1 NUDIX hydrolase YP_006091368.1 1511993 R 536056 CDS YP_006091369.1 386594969 12705000 1512697..1513239 1 NC_017625.1 PFAM: YfaZ family protein; KEGG: ssn:SSON_2311 hypothetical protein; hypothetical protein 1513239 12705000 EcDH1_1408 Escherichia coli DH1 hypothetical protein YP_006091369.1 1512697 D 536056 CDS YP_006091370.1 386594970 12705001 1513339..1514541 1 NC_017625.1 TIGRFAM: molybdenum cofactor synthesis domain protein; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; KEGG: sfx:S2461 competence damage-inducible protein A; competence/damage-inducible protein CinA 1514541 12705001 EcDH1_1409 Escherichia coli DH1 competence/damage-inducible protein CinA YP_006091370.1 1513339 D 536056 CDS YP_006091371.1 386594971 12705002 1514761..1515543 1 NC_017625.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ssn:SSON_2309 putative regulator; IclR family transcriptional regulator 1515543 12705002 EcDH1_1410 Escherichia coli DH1 IclR family transcriptional regulator YP_006091371.1 1514761 D 536056 CDS YP_006091372.1 386594972 12705003 1515558..1516763 1 NC_017625.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sbo:SBO_2047 putative racemase; mandelate racemase/muconate lactonizing protein 1516763 12705003 EcDH1_1411 Escherichia coli DH1 mandelate racemase/muconate lactonizing protein YP_006091372.1 1515558 D 536056 CDS YP_006091373.1 386594973 12705004 1516820..1518109 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_2048 putative transport protein; major facilitator superfamily protein 1518109 12705004 EcDH1_1412 Escherichia coli DH1 major facilitator superfamily protein YP_006091373.1 1516820 D 536056 CDS YP_006091374.1 386594974 12705005 1518127..1518930 1 NC_017625.1 PFAM: HpcH/HpaI aldolase; KEGG: ssn:SSON_2306 putative aldolase; 2-dehydro-3-deoxyglucarate aldolase 1518930 12705005 EcDH1_1413 Escherichia coli DH1 2-dehydro-3-deoxyglucarate aldolase YP_006091374.1 1518127 D 536056 CDS YP_006091375.1 386594975 12705007 complement(1519169..1520068) 1 NC_017625.1 PFAM: putative transposase YhgA family protein; KEGG: sbc:SbBS512_E2627 hypothetical protein; putative transposase YhgA family protein 1520068 12705007 EcDH1_1415 Escherichia coli DH1 putative transposase YhgA family protein YP_006091375.1 1519169 R 536056 CDS YP_006091376.1 386594976 12705008 complement(1520261..1521451) 1 NC_017625.1 TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sfx:S2458 sn-glycerol-3-phosphate dehydrogenase subunit C; glycerol-3-phosphate dehydrogenase 1521451 12705008 EcDH1_1416 Escherichia coli DH1 glycerol-3-phosphate dehydrogenase YP_006091376.1 1520261 R 536056 CDS YP_006091377.1 386594977 12705009 complement(1521448..1522707) 1 NC_017625.1 KEGG: ssn:SSON_2303 anaerobic glycerol-3-phosphate dehydrogenase subunit B; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; glycerol-3-phosphate dehydrogenase 1522707 12705009 EcDH1_1417 Escherichia coli DH1 glycerol-3-phosphate dehydrogenase YP_006091377.1 1521448 R 536056 CDS YP_006091378.1 386594978 12705010 complement(1522697..1524325) 1 NC_017625.1 TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sbc:SbBS512_E2623 anaerobic glycerol-3-phosphate dehydrogenase subunit, A; glycerol-3-phosphate dehydrogenase 1524325 12705010 EcDH1_1418 Escherichia coli DH1 glycerol-3-phosphate dehydrogenase YP_006091378.1 1522697 R 536056 CDS YP_006091379.1 386594979 12705011 1524598..1525956 1 NC_017625.1 TIGRFAM: phosphoglycerate transporter; glycerol-3-phosphate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2622 glycerol-3-phosphate transporter; glycerol-3-phosphate transporter 1525956 12705011 EcDH1_1419 Escherichia coli DH1 glycerol-3-phosphate transporter YP_006091379.1 1524598 D 536056 CDS YP_006091380.1 386594980 12705012 1525961..1527037 1 NC_017625.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sbc:SbBS512_E2621 glycerophosphoryl diester phosphodiesterase GlpQ; glycerophosphoryl diester phosphodiesterase 1527037 12705012 EcDH1_1420 Escherichia coli DH1 glycerophosphoryl diester phosphodiesterase YP_006091380.1 1525961 D 536056 CDS YP_006091381.1 386594981 12705013 complement(1527079..1527285) 1 NC_017625.1 KEGG: sbc:SbBS512_E2620 hypothetical protein; hypothetical protein 1527285 12705013 EcDH1_1421 Escherichia coli DH1 hypothetical protein YP_006091381.1 1527079 R 536056 CDS YP_006091382.1 386594982 12705014 1527500..1528150 1 NC_017625.1 PFAM: lipopolysaccharide kinase; KEGG: sfv:SFV_2310 hypothetical protein; lipopolysaccharide kinase 1528150 12705014 EcDH1_1422 Escherichia coli DH1 lipopolysaccharide kinase YP_006091382.1 1527500 D 536056 CDS YP_006091383.1 386594983 12705015 complement(1528204..1528458) 1 NC_017625.1 PFAM: ferredoxin; KEGG: sbc:SbBS512_E2616 2Fe-2S iron-sulfur cluster-binding protein; ferredoxin 1528458 12705015 EcDH1_1423 Escherichia coli DH1 ferredoxin YP_006091383.1 1528204 R 536056 CDS YP_006091384.1 386594984 12705016 complement(1528458..1529639) 1 NC_017625.1 PFAM: ribonucleotide reductase; KEGG: sfv:SFV_2308 ribonucleotide-diphosphate reductase subunit beta; ribonucleoside-diphosphate reductase 1529639 12705016 EcDH1_1424 Escherichia coli DH1 ribonucleoside-diphosphate reductase YP_006091384.1 1528458 R 536056 CDS YP_006091385.1 386594985 12705017 complement(1529822..1532107) 1 NC_017625.1 KEGG: ssn:SSON_2293 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha 1532107 12705017 EcDH1_1425 Escherichia coli DH1 ribonucleoside-diphosphate reductase subunit alpha YP_006091385.1 1529822 R 536056 CDS YP_006091386.1 386594986 12705018 1532851..1536555 1 NC_017625.1 TIGRFAM: polymorphic outer membrane protein; outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Polymorphic membrane protein Chlamydia; Pertactin; Autotransporter beta- domain protein; KEGG: sdy:SDY_2425 putative ATP-binding component of a transport system; outer membrane autotransporter barrel domain-containing protein 1536555 12705018 EcDH1_1426 Escherichia coli DH1 outer membrane autotransporter barrel domain-containing protein YP_006091386.1 1532851 D 536056 CDS YP_006091387.1 386594987 12705019 complement(1536683..1537405) 1 NC_017625.1 KEGG: sdy:SDY_2424 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase 1537405 12705019 EcDH1_1427 Escherichia coli DH1 ubiquinone biosynthesis O-methyltransferase YP_006091387.1 1536683 R 536056 CDS YP_006091388.1 386594988 12705020 1537552..1540179 1 NC_017625.1 KEGG: sbc:SbBS512_E2606 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 1540179 12705020 EcDH1_1428 Escherichia coli DH1 DNA gyrase subunit A YP_006091388.1 1537552 D 536056 CDS YP_006091389.1 386594989 12705021 1540328..1542016 1 NC_017625.1 KEGG: ssn:SSON_2288 hypothetical protein; hypothetical protein 1542016 12705021 EcDH1_1429 Escherichia coli DH1 hypothetical protein YP_006091389.1 1540328 D 536056 CDS YP_006091390.1 386594990 12705022 1542013..1542636 1 NC_017625.1 PFAM: protein of unknown function DUF1175; KEGG: sfv:SFV_2299 hypothetical protein; hypothetical protein 1542636 12705022 EcDH1_1430 Escherichia coli DH1 hypothetical protein YP_006091390.1 1542013 D 536056 CDS YP_006091391.1 386594991 12705024 1547175..1548824 1 NC_017625.1 KEGG: ssn:SSON_2285 hypothetical protein; hypothetical protein 1548824 12705024 EcDH1_1432 Escherichia coli DH1 hypothetical protein YP_006091391.1 1547175 D 536056 CDS YP_006091392.1 386594992 12705025 1548829..1549605 1 NC_017625.1 KEGG: sfv:SFV_2294 hypothetical protein; hypothetical protein 1549605 12705025 EcDH1_1433 Escherichia coli DH1 hypothetical protein YP_006091392.1 1548829 D 536056 CDS YP_006091393.1 386594993 12705026 complement(1549679..1550863) 1 NC_017625.1 KEGG: ssn:SSON_2283 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 1550863 12705026 EcDH1_1434 Escherichia coli DH1 acetyl-CoA acetyltransferase YP_006091393.1 1549679 R 536056 CDS YP_006091394.1 386594994 12705027 complement(1550894..1552216) 1 NC_017625.1 PFAM: short chain fatty acid transporter; KEGG: ssn:SSON_2282 short chain fatty acid transporter; short chain fatty acid transporter 1552216 12705027 EcDH1_1435 Escherichia coli DH1 short chain fatty acid transporter YP_006091394.1 1550894 R 536056 CDS YP_006091395.1 386594995 12705028 complement(1552213..1552863) 1 NC_017625.1 KEGG: ssn:SSON_2281 acetyl-CoA:acetoacetyl-CoA transferase beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 1552863 12705028 EcDH1_1436 Escherichia coli DH1 3-oxoacid CoA-transferase subunit B YP_006091395.1 1552213 R 536056 CDS YP_006091396.1 386594996 12705029 complement(1552863..1553525) 1 NC_017625.1 KEGG: ssn:SSON_2280 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 1553525 12705029 EcDH1_1437 Escherichia coli DH1 3-oxoacid CoA-transferase subunit A YP_006091396.1 1552863 R 536056 CDS YP_006091397.1 386594997 12705030 complement(1553721..1555106) 1 NC_017625.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ssn:SSON_2279 acetoacetate metabolism regulatory protein AtoC; two component Fis family sigma54-specific transcriptional regulator 1555106 12705030 EcDH1_1438 Escherichia coli DH1 two component Fis family sigma54-specific transcriptional regulator YP_006091397.1 1553721 R 536056 CDS YP_006091398.1 386594998 12705031 complement(1555103..1556929) 1 NC_017625.1 KEGG: ssn:SSON_2278 sensory histidine kinase AtoS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 1556929 12705031 EcDH1_1439 Escherichia coli DH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_006091398.1 1555103 R 536056 CDS YP_006091399.1 386594999 12705032 1557096..1559945 1 NC_017625.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase; KEGG: ssn:SSON_2277 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; histidine kinase 1559945 12705032 EcDH1_1440 Escherichia coli DH1 histidine kinase YP_006091399.1 1557096 D 536056 CDS YP_006091400.1 386595000 12705033 complement(1560145..1560795) 1 NC_017625.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sdy:SDY_0857 DNA-binding response regulator in two-component regulatory system with RcsC and YojN; LuxR family two component transcriptional regulator 1560795 12705033 EcDH1_1441 Escherichia coli DH1 LuxR family two component transcriptional regulator YP_006091400.1 1560145 R 536056 CDS YP_006091401.1 386595001 12705034 complement(1560812..1563484) 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: sbo:SBO_2091 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Hpt sensor signal transduction histidine kinase 1563484 12705034 EcDH1_1442 Escherichia coli DH1 Hpt sensor signal transduction histidine kinase YP_006091401.1 1560812 R 536056 CDS YP_006091402.1 386595002 12705035 1564223..1565326 1 NC_017625.1 PFAM: porin Gram-negative type; KEGG: sbo:SBO_2092 outer membrane porin protein C; porin 1565326 12705035 EcDH1_1443 Escherichia coli DH1 porin YP_006091402.1 1564223 D 536056 CDS YP_006091403.1 386595003 12705036 1565438..1566493 1 NC_017625.1 PFAM: ApbE family lipoprotein; KEGG: sdy:SDY_0862 thiamine biosynthesis lipoprotein ApbE; ApbE family lipoprotein 1566493 12705036 EcDH1_1444 Escherichia coli DH1 ApbE family lipoprotein YP_006091403.1 1565438 D 536056 CDS YP_006091404.1 386595004 12705037 1566567..1567631 1 NC_017625.1 KEGG: sbc:SbBS512_E0727 regulatory protein Ada; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; AraC family transcriptional regulator 1567631 12705037 EcDH1_1445 Escherichia coli DH1 AraC family transcriptional regulator YP_006091404.1 1566567 D 536056 CDS YP_006091405.1 386595005 12705038 1567631..1568281 1 NC_017625.1 TIGRFAM: alkylated DNA repair protein AlkB; PFAM: 2OG-Fe(II) oxygenase; KEGG: sbc:SbBS512_E0728 alkylated DNA repair protein AlkB; alkylated DNA repair protein AlkB 1568281 12705038 EcDH1_1446 Escherichia coli DH1 alkylated DNA repair protein AlkB YP_006091405.1 1567631 D 536056 CDS YP_006091406.1 386595006 12705039 1568357..1570000 1 NC_017625.1 KEGG: sbc:SbBS512_E0729 ABC transporter ATP-binding protein; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter 1570000 12705039 EcDH1_1447 Escherichia coli DH1 cyclic peptide transporter YP_006091406.1 1568357 D 536056 CDS YP_006091407.1 386595007 12705040 1570218..1571864 1 NC_017625.1 KEGG: ssn:SSON_2268 malate:quinone oxidoreductase; TIGRFAM: malate/quinone oxidoreductase; PFAM: FAD dependent oxidoreductase; Malate:quinone-oxidoreductase; malate/quinone oxidoreductase 1571864 12705040 EcDH1_1448 Escherichia coli DH1 malate/quinone oxidoreductase YP_006091407.1 1570218 D 536056 CDS YP_006091408.1 386595008 12705041 complement(1572466..1572954) 1 NC_017625.1 PFAM: proteinase inhibitor I11 ecotin; KEGG: ssn:SSON_2267 ecotin precursor; proteinase inhibitor I11 ecotin 1572954 12705041 EcDH1_1449 Escherichia coli DH1 proteinase inhibitor I11 ecotin YP_006091408.1 1572466 R 536056 CDS YP_006091409.1 386595009 12705042 complement(1573089..1573253) 1 NC_017625.1 KEGG: sbc:SbBS512_E0732 hypothetical protein; hypothetical protein 1573253 12705042 EcDH1_1450 Escherichia coli DH1 hypothetical protein YP_006091409.1 1573089 R 536056 CDS YP_006091410.1 386595010 12705043 1573362..1573856 1 NC_017625.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_2099 ferredoxin-type protein; ferredoxin-type protein NapF 1573856 12705043 EcDH1_1451 Escherichia coli DH1 ferredoxin-type protein NapF YP_006091410.1 1573362 D 536056 CDS YP_006091411.1 386595011 12705044 1573846..1574109 1 NC_017625.1 PFAM: NapD family protein; KEGG: sbc:SbBS512_E0734 NapD protein; NapD family protein 1574109 12705044 EcDH1_1452 Escherichia coli DH1 NapD family protein YP_006091411.1 1573846 D 536056 CDS YP_006091412.1 386595012 12705045 1574106..1576592 1 NC_017625.1 TIGRFAM: periplasmic nitrate reductase, large subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; periplasmic nitrate reductase large subunit; KEGG: ssn:SSON_2264 probable nitrate reductase 3; periplasmic nitrate reductase, large subunit 1576592 12705045 EcDH1_1453 Escherichia coli DH1 periplasmic nitrate reductase, large subunit YP_006091412.1 1574106 D 536056 CDS YP_006091413.1 386595013 12705046 1576599..1577294 1 NC_017625.1 TIGRFAM: MauM/NapG family ferredoxin-type protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sdy:SDY_0873 quinol dehydrogenase periplasmic component; MauM/NapG family ferredoxin-type protein 1577294 12705046 EcDH1_1454 Escherichia coli DH1 MauM/NapG family ferredoxin-type protein YP_006091413.1 1576599 D 536056 CDS YP_006091414.1 386595014 12705047 1577281..1578144 1 NC_017625.1 TIGRFAM: ferredoxin-type protein, NapH/MauN family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2280 quinol dehydrogenase membrane component; ferredoxin-type protein, NapH/MauN family 1578144 12705047 EcDH1_1455 Escherichia coli DH1 ferredoxin-type protein, NapH/MauN family YP_006091414.1 1577281 D 536056 CDS YP_006091415.1 386595015 12705048 1578141..1578590 1 NC_017625.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: ssn:SSON_2261 diheme cytochrome c550; nitrate reductase cytochrome c-type subunit (NapB) 1578590 12705048 EcDH1_1456 Escherichia coli DH1 nitrate reductase cytochrome c-type subunit (NapB) YP_006091415.1 1578141 D 536056 CDS YP_006091416.1 386595016 12705049 1578600..1579202 1 NC_017625.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: sbc:SbBS512_E0739 cytochrome c-type protein NapC; periplasmic nitrate (or nitrite) reductase c-type cytochrome 1579202 12705049 EcDH1_1457 Escherichia coli DH1 periplasmic nitrate (or nitrite) reductase c-type cytochrome YP_006091416.1 1578600 D 536056 CDS YP_006091417.1 386595017 12705050 1579221..1579838 1 NC_017625.1 KEGG: sbc:SbBS512_E0740 heme ABC exporter, ATP-binding protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA 1579838 12705050 EcDH1_1458 Escherichia coli DH1 heme exporter protein CcmA YP_006091417.1 1579221 D 536056 CDS YP_006091418.1 386595018 12705051 1579835..1580497 1 NC_017625.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: sdy:SDY_0878 heme exporter protein B; heme exporter protein CcmB 1580497 12705051 EcDH1_1459 Escherichia coli DH1 heme exporter protein CcmB YP_006091418.1 1579835 D 536056 CDS YP_006091419.1 386595019 12705052 1580539..1581276 1 NC_017625.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: sdy:SDY_0879 heme exporter protein C; heme exporter protein CcmC 1581276 12705052 EcDH1_1460 Escherichia coli DH1 heme exporter protein CcmC YP_006091419.1 1580539 D 536056 CDS YP_006091420.1 386595020 12705053 1581273..1581482 1 NC_017625.1 TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: sdy:SDY_0880 heme exporter protein C; heme exporter protein CcmD 1581482 12705053 EcDH1_1461 Escherichia coli DH1 heme exporter protein CcmD YP_006091420.1 1581273 D 536056 CDS YP_006091421.1 386595021 12705054 1581479..1581958 1 NC_017625.1 PFAM: CcmE/CycJ protein; KEGG: sdy:SDY_0881 cytochrome c-type biogenesis protein CcmE; CcmE/CycJ protein 1581958 12705054 EcDH1_1462 Escherichia coli DH1 CcmE/CycJ protein YP_006091421.1 1581479 D 536056 CDS YP_006091422.1 386595022 12705055 1581955..1583898 1 NC_017625.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: sbo:SBO_2111 cytochrome c-type biogenesis protein; cytochrome c-type biogenesis protein CcmF 1583898 12705055 EcDH1_1463 Escherichia coli DH1 cytochrome c-type biogenesis protein CcmF YP_006091422.1 1581955 D 536056 CDS YP_006091423.1 386595023 12705056 1583895..1584452 1 NC_017625.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sbc:SbBS512_E0746 thiol:disulfide interchange protein DsbE; periplasmic protein thiol/disulfide oxidoreductase DsbE 1584452 12705056 EcDH1_1464 Escherichia coli DH1 periplasmic protein thiol/disulfide oxidoreductase DsbE YP_006091423.1 1583895 D 536056 CDS YP_006091424.1 386595024 12705057 1584449..1585501 1 NC_017625.1 PFAM: cytochrome C biogenesis protein; KEGG: sfv:SFV_2270 subunit of heme lyase; cytochrome C biogenesis protein 1585501 12705057 EcDH1_1465 Escherichia coli DH1 cytochrome C biogenesis protein YP_006091424.1 1584449 D 536056 CDS YP_006091425.1 386595025 12705058 complement(1585712..1586359) 1 NC_017625.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sdy:SDY_0885 DNA-binding response regulator in two-component regulatory system with NarQ or NarX; LuxR family two component transcriptional regulator 1586359 12705058 EcDH1_1466 Escherichia coli DH1 LuxR family two component transcriptional regulator YP_006091425.1 1585712 R 536056 CDS YP_006091426.1 386595026 12705059 1586814..1587794 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 1587794 12705059 EcDH1_1467 Escherichia coli DH1 transposase IS4 family protein YP_006091426.1 1586814 D 536056 CDS YP_006091427.1 386595027 12705060 1587959..1590469 1 NC_017625.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sfx:S2406 putative ATP-binding component of a transport system; outer membrane autotransporter barrel domain-containing protein 1590469 12705060 EcDH1_1468 Escherichia coli DH1 outer membrane autotransporter barrel domain-containing protein YP_006091427.1 1587959 D 536056 CDS YP_006091428.1 386595028 12705062 complement(1590723..1592483) 1 NC_017625.1 PFAM: sulfatase; KEGG: ssn:SSON_2244 putative sulfatase; sulfatase 1592483 12705062 EcDH1_1469 Escherichia coli DH1 sulfatase YP_006091428.1 1590723 R 536056 CDS YP_006091429.1 386595029 12705063 complement(1592503..1592730) 1 NC_017625.1 PFAM: protein of unknown function DUF1414; KEGG: sbc:SbBS512_E0770 hypothetical protein; hypothetical protein 1592730 12705063 EcDH1_1470 Escherichia coli DH1 hypothetical protein YP_006091429.1 1592503 R 536056 CDS YP_006091430.1 386595030 12705064 1592912..1593919 1 NC_017625.1 PFAM: 37kDa nucleoid-associated protein; KEGG: sdy:SDY_0893 nucleoid-associated protein NdpA; 37kDa nucleoid-associated protein 1593919 12705064 EcDH1_1471 Escherichia coli DH1 37kDa nucleoid-associated protein YP_006091430.1 1592912 D 536056 CDS YP_006091431.1 386595031 12705065 complement(1594058..1594342) 1 NC_017625.1 PFAM: ribosomal protein L25; KEGG: sdy:SDY_0894 50S ribosomal protein L25; 50S ribosomal protein L25 1594342 12705065 EcDH1_1472 Escherichia coli DH1 50S ribosomal protein L25 YP_006091431.1 1594058 R 536056 CDS YP_006091432.1 386595032 12705066 complement(1594467..1596227) 1 NC_017625.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sdy:SDY_0895 putative ATP-dependent helicase; type III restriction protein res subunit 1596227 12705066 EcDH1_1473 Escherichia coli DH1 type III restriction protein res subunit YP_006091432.1 1594467 R 536056 CDS YP_006091433.1 386595033 12705067 1596376..1597071 1 NC_017625.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sbo:SBO_2141 16S rRNA pseudouridylate synthase A; pseudouridine synthase 1597071 12705067 EcDH1_1474 Escherichia coli DH1 pseudouridine synthase YP_006091433.1 1596376 D 536056 CDS YP_006091434.1 386595034 12705068 1597099..1598289 1 NC_017625.1 TIGRFAM: multidrug/H+ antiporter, major facilitator superfamily (MFS); drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S2398 bicyclomycin/multidrug efflux system; Bcr/CflA family multidrug resistance transporter 1598289 12705068 EcDH1_1475 Escherichia coli DH1 Bcr/CflA family multidrug resistance transporter YP_006091434.1 1597099 D 536056 CDS YP_006091435.1 386595035 12705069 1598622..1598966 1 NC_017625.1 KEGG: sdy:SDY_0898 hypothetical protein; hypothetical protein 1598966 12705069 EcDH1_1476 Escherichia coli DH1 hypothetical protein YP_006091435.1 1598622 D 536056 CDS YP_006091436.1 386595036 12705070 complement(1598970..1600559) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0899 putative ATP-binding component of a transport system; ABC transporter 1600559 12705070 EcDH1_1477 Escherichia coli DH1 ABC transporter YP_006091436.1 1598970 R 536056 CDS YP_006091437.1 386595037 12705071 complement(1600561..1601586) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_2145 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 1601586 12705071 EcDH1_1478 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006091437.1 1600561 R 536056 CDS YP_006091438.1 386595038 12705072 complement(1601586..1602680) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_2234 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 1602680 12705072 EcDH1_1479 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006091438.1 1601586 R 536056 CDS YP_006091439.1 386595039 12705073 complement(1602681..1604495) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_2233 hypothetical protein; family 5 extracellular solute-binding protein 1604495 12705073 EcDH1_1480 Escherichia coli DH1 family 5 extracellular solute-binding protein YP_006091439.1 1602681 R 536056 CDS YP_006091440.1 386595040 12705074 complement(1604577..1606133) 1 NC_017625.1 PFAM: EAL domain protein; KEGG: sbc:SbBS512_E0782 putative cyclic diguanylate phosphodiesterase; diguanylate phosphodiesterase 1606133 12705074 EcDH1_1481 Escherichia coli DH1 diguanylate phosphodiesterase YP_006091440.1 1604577 R 536056 CDS YP_006091441.1 386595041 12705075 complement(1606314..1606880) 1 NC_017625.1 PFAM: NLP/P60 protein; KEGG: sdy:SDY_0904 putative lipoprotein; NLP/P60 protein 1606880 12705075 EcDH1_1482 Escherichia coli DH1 NLP/P60 protein YP_006091441.1 1606314 R 536056 CDS YP_006091442.1 386595042 12705076 complement(1607292..1608005) 1 NC_017625.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sdy:SDY_0905 hypothetical protein; phosphoesterase PA-phosphatase-like protein 1608005 12705076 EcDH1_1483 Escherichia coli DH1 phosphoesterase PA-phosphatase-like protein YP_006091442.1 1607292 R 536056 CDS YP_006091443.1 386595043 12705077 complement(1608044..1609030) 1 NC_017625.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sbc:SbBS512_E0785 CobW/P47K family protein; cobalamin synthesis protein P47K 1609030 12705077 EcDH1_1484 Escherichia coli DH1 cobalamin synthesis protein P47K YP_006091443.1 1608044 R 536056 CDS YP_006091444.1 386595044 12705078 complement(1609148..1610614) 1 NC_017625.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ssn:SSON_2228 putative oxidoreductase; mannitol dehydrogenase domain-containing protein 1610614 12705078 EcDH1_1485 Escherichia coli DH1 mannitol dehydrogenase domain-containing protein YP_006091444.1 1609148 R 536056 CDS YP_006091445.1 386595045 12705079 complement(1610837..1611409) 1 NC_017625.1 TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: sdy:SDY_0908 elongation factor P; elongation factor P-like protein YeiP 1611409 12705079 EcDH1_1486 Escherichia coli DH1 elongation factor P-like protein YeiP YP_006091445.1 1610837 R 536056 CDS YP_006091446.1 386595046 12705080 1611564..1611818 1 NC_017625.1 PFAM: protein of unknown function UPF0153; KEGG: sbc:SbBS512_E0791 hypothetical protein; hypothetical protein 1611818 12705080 EcDH1_1487 Escherichia coli DH1 hypothetical protein YP_006091446.1 1611564 D 536056 CDS YP_006091447.1 386595047 12705081 complement(1611815..1612996) 1 NC_017625.1 TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E0792 sugar efflux transporter B; sugar efflux transporter 1612996 12705081 EcDH1_1488 Escherichia coli DH1 sugar efflux transporter YP_006091447.1 1611815 R 536056 CDS YP_006091448.1 386595048 12705082 1613364..1614494 1 NC_017625.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoryl transfer system HPr; KEGG: ssn:SSON_2225 fructose-specific PTS IIA/HPr components; phosphocarrier, Hpr family 1614494 12705082 EcDH1_1489 Escherichia coli DH1 phosphocarrier, Hpr family YP_006091448.1 1613364 D 536056 CDS YP_006091449.1 386595049 12705083 1614494..1615432 1 NC_017625.1 KEGG: sdy:SDY_2316 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 1615432 12705083 EcDH1_1490 Escherichia coli DH1 1-phosphofructokinase YP_006091449.1 1614494 D 536056 CDS YP_006091450.1 386595050 12705084 1615449..1617140 1 NC_017625.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sbc:SbBS512_E0796 PTS system, fructose-specific, IIBC component; PTS system fructose subfamily transporter subunit IIC 1617140 12705084 EcDH1_1491 Escherichia coli DH1 PTS system fructose subfamily transporter subunit IIC YP_006091450.1 1615449 D 536056 CDS YP_006091451.1 386595051 12705085 1617563..1618504 1 NC_017625.1 PFAM: PfkB domain protein; KEGG: sfv:SFV_2241 hypothetical protein; PfkB domain-containing protein 1618504 12705085 EcDH1_1492 Escherichia coli DH1 PfkB domain-containing protein YP_006091451.1 1617563 D 536056 CDS YP_006091452.1 386595052 12705086 1618492..1619430 1 NC_017625.1 PFAM: Indigoidine synthase A family protein; KEGG: sfv:SFV_2240 hypothetical protein; Indigoidine synthase A family protein 1619430 12705086 EcDH1_1493 Escherichia coli DH1 Indigoidine synthase A family protein YP_006091452.1 1618492 D 536056 CDS YP_006091453.1 386595053 12705087 1619524..1620774 1 NC_017625.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sbc:SbBS512_E0801 nucleoside transporter, NupC family; nucleoside transporter 1620774 12705087 EcDH1_1494 Escherichia coli DH1 nucleoside transporter YP_006091453.1 1619524 D 536056 CDS YP_006091454.1 386595054 12705088 complement(1620845..1621543) 1 NC_017625.1 PFAM: cyclic nucleotide-binding; KEGG: ssn:SSON_2219 DNA-binding transcriptional activator of stationary phase nitrogen survival; cyclic nucleotide-binding protein 1621543 12705088 EcDH1_1495 Escherichia coli DH1 cyclic nucleotide-binding protein YP_006091454.1 1620845 R 536056 CDS YP_006091455.1 386595055 12705089 1621673..1622614 1 NC_017625.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ssn:SSON_2218 ribonucleoside hydrolase 2; inosine/uridine-preferring nucleoside hydrolase 1622614 12705089 EcDH1_1496 Escherichia coli DH1 inosine/uridine-preferring nucleoside hydrolase YP_006091455.1 1621673 D 536056 CDS YP_006091456.1 386595056 12705090 1622714..1623964 1 NC_017625.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sdy:SDY_2105 putative transport system permease protein; nucleoside transporter 1623964 12705090 EcDH1_1497 Escherichia coli DH1 nucleoside transporter YP_006091456.1 1622714 D 536056 CDS YP_006091457.1 386595057 12705091 complement(1624071..1625159) 1 NC_017625.1 PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E0806 kinase, PfkB family; PfkB domain-containing protein 1625159 12705091 EcDH1_1498 Escherichia coli DH1 PfkB domain-containing protein YP_006091457.1 1624071 R 536056 CDS YP_006091458.1 386595058 12705092 complement(1625162..1626019) 1 NC_017625.1 KEGG: sdy:SDY_2107 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 1626019 12705092 EcDH1_1499 Escherichia coli DH1 apurinic endonuclease Apn1 YP_006091458.1 1625162 R 536056 CDS YP_006091459.1 386595059 12705093 complement(1626093..1627142) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbo:SBO_2169 hypothetical protein; hypothetical protein 1627142 12705093 EcDH1_1500 Escherichia coli DH1 hypothetical protein YP_006091459.1 1626093 R 536056 CDS YP_006091460.1 386595060 12705094 1627316..1628122 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_2213 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 1628122 12705094 EcDH1_1501 Escherichia coli DH1 LysR family transcriptional regulator YP_006091460.1 1627316 D 536056 CDS YP_006091461.1 386595061 12705095 1628327..1629796 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2110 lysine transporter; amino acid permease 1629796 12705095 EcDH1_1502 Escherichia coli DH1 amino acid permease YP_006091461.1 1628327 D 536056 CDS YP_006091462.1 386595062 12705096 1630090..1632081 1 NC_017625.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ssn:SSON_2211 ferric iron-catecholate outer membrane transporter; TonB-dependent receptor plug 1632081 12705096 EcDH1_1503 Escherichia coli DH1 TonB-dependent receptor plug YP_006091462.1 1630090 D 536056 CDS YP_006091463.1 386595063 12705097 complement(1632113..1632949) 1 NC_017625.1 KEGG: sbc:SbBS512_E0812 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 1632949 12705097 EcDH1_1504 Escherichia coli DH1 S-formylglutathione hydrolase YP_006091463.1 1632113 R 536056 CDS YP_006091464.1 386595064 12705098 1633207..1633875 1 NC_017625.1 PFAM: GTP cyclohydrolase I; KEGG: sdy:SDY_2127 GTP cyclohydrolase I; GTP cyclohydrolase I 1633875 12705098 EcDH1_1505 Escherichia coli DH1 GTP cyclohydrolase I YP_006091464.1 1633207 D 536056 CDS YP_006091465.1 386595065 12705099 1633892..1635049 1 NC_017625.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: sbc:SbBS512_E0814 hypothetical protein; hypothetical protein 1635049 12705099 EcDH1_1506 Escherichia coli DH1 hypothetical protein YP_006091465.1 1633892 D 536056 CDS YP_006091466.1 386595066 12705100 1635191..1636231 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sfv:SFV_2226 DNA-binding transcriptional regulator GalS; LacI family transcriptional regulator 1636231 12705100 EcDH1_1507 Escherichia coli DH1 LacI family transcriptional regulator YP_006091466.1 1635191 D 536056 CDS YP_006091467.1 386595067 12705101 1636511..1637509 1 NC_017625.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sdy:SDY_2130 galactose-binding transport protein; periplasmic binding protein/LacI transcriptional regulator 1637509 12705101 EcDH1_1508 Escherichia coli DH1 periplasmic binding protein/LacI transcriptional regulator YP_006091467.1 1636511 D 536056 CDS YP_006091468.1 386595068 12705102 1637570..1639090 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_2205 galactose/methyl galaxtoside transporter ATP-binding protein; ABC transporter 1639090 12705102 EcDH1_1509 Escherichia coli DH1 ABC transporter YP_006091468.1 1637570 D 536056 CDS YP_006091469.1 386595069 12705103 1639106..1640116 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E0823 galactose ABC transporter, permease protein; monosaccharide-transporting ATPase 1640116 12705103 EcDH1_1510 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006091469.1 1639106 D 536056 CDS YP_006091470.1 386595070 12705104 complement(1640359..1641594) 1 NC_017625.1 KEGG: ssn:SSON_2203 dihydropyrimidine dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; dihydroorotate dehydrogenase family protein 1641594 12705104 EcDH1_1511 Escherichia coli DH1 dihydroorotate dehydrogenase family protein YP_006091470.1 1640359 R 536056 CDS YP_006091471.1 386595071 12705105 complement(1641588..1642826) 1 NC_017625.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sbo:SBO_0995 putative oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1642826 12705105 EcDH1_1512 Escherichia coli DH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_006091471.1 1641588 R 536056 CDS YP_006091472.1 386595072 12705106 complement(1643020..1643259) 1 NC_017625.1 KEGG: sbc:SbBS512_E0826 hypothetical protein; hypothetical protein 1643259 12705106 EcDH1_1513 Escherichia coli DH1 hypothetical protein YP_006091472.1 1643020 R 536056 CDS YP_006091473.1 386595073 12705107 complement(1643262..1643981) 1 NC_017625.1 PFAM: protein of unknown function DUF218; KEGG: sdy:SDY_2143 hypothetical protein; hypothetical protein 1643981 12705107 EcDH1_1514 Escherichia coli DH1 hypothetical protein YP_006091473.1 1643262 R 536056 CDS YP_006091474.1 386595074 12705108 complement(1644131..1645015) 1 NC_017625.1 KEGG: sbc:SbBS512_E0828 cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; cytidine deaminase 1645015 12705108 EcDH1_1515 Escherichia coli DH1 cytidine deaminase YP_006091474.1 1644131 R 536056 CDS YP_006091475.1 386595075 12705109 complement(1645145..1645840) 1 NC_017625.1 PFAM: LrgB family protein; KEGG: sbc:SbBS512_E0829 LrgB family protein; LrgB family protein 1645840 12705109 EcDH1_1516 Escherichia coli DH1 LrgB family protein YP_006091475.1 1645145 R 536056 CDS YP_006091476.1 386595076 12705110 complement(1645837..1646235) 1 NC_017625.1 PFAM: LrgA family protein; KEGG: sbo:SBO_1000 hypothetical protein; LrgA family protein 1646235 12705110 EcDH1_1517 Escherichia coli DH1 LrgA family protein YP_006091476.1 1645837 R 536056 CDS YP_006091477.1 386595077 12705111 1646474..1647421 1 NC_017625.1 PFAM: dihydrouridine synthase DuS; KEGG: ssn:SSON_2196 tRNA-dihydrouridine synthase C; dihydrouridine synthase DuS 1647421 12705111 EcDH1_1518 Escherichia coli DH1 dihydrouridine synthase DuS YP_006091477.1 1646474 D 536056 CDS YP_006091478.1 386595078 12705113 1649589..1650350 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbc:SbBS512_E0834 putative 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 1650350 12705113 EcDH1_1520 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006091478.1 1649589 D 536056 CDS YP_006091479.1 386595079 12705114 complement(1650480..1651058) 1 NC_017625.1 PFAM: SNARE associated Golgi protein; KEGG: sbc:SbBS512_E0835 hypothetical protein; hypothetical protein 1651058 12705114 EcDH1_1521 Escherichia coli DH1 hypothetical protein YP_006091479.1 1650480 R 536056 CDS YP_006091480.1 386595080 12705115 1651228..1651815 1 NC_017625.1 PFAM: protein of unknown function DUF1282; KEGG: sbo:SBO_1009 hypothetical protein; hypothetical protein 1651815 12705115 EcDH1_1522 Escherichia coli DH1 hypothetical protein YP_006091480.1 1651228 D 536056 CDS YP_006091481.1 386595081 12705116 1651980..1652921 1 NC_017625.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sdy:SDY_2154 D-alanyl-D-alanine endopeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 1652921 12705116 EcDH1_1523 Escherichia coli DH1 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_006091481.1 1651980 D 536056 CDS YP_006091482.1 386595082 12705117 complement(1652959..1654674) 1 NC_017625.1 PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase membrane binding; KEGG: sbc:SbBS512_E0839 D-lactate dehydrogenase; D-lactate dehydrogenase 1654674 12705117 EcDH1_1524 Escherichia coli DH1 D-lactate dehydrogenase YP_006091482.1 1652959 R 536056 CDS YP_006091483.1 386595083 12705118 1654870..1657167 1 NC_017625.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: sbc:SbBS512_E0841 beta-glucosidase, periplasmic; glycoside hydrolase family protein 1657167 12705118 EcDH1_1525 Escherichia coli DH1 glycoside hydrolase family protein YP_006091483.1 1654870 D 536056 CDS YP_006091484.1 386595084 12705119 1657378..1658295 1 NC_017625.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sbo:SBO_1013 putative transport system permease protein; glycine betaine ABC transporter substrate-binding protein 1658295 12705119 EcDH1_1526 Escherichia coli DH1 glycine betaine ABC transporter substrate-binding protein YP_006091484.1 1657378 D 536056 CDS YP_006091485.1 386595085 12705120 1658302..1659459 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1014 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 1659459 12705120 EcDH1_1527 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006091485.1 1658302 D 536056 CDS YP_006091486.1 386595086 12705121 1659452..1660378 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfv:SFV_2205 putative ATP-binding component of a transport system; ABC transporter 1660378 12705121 EcDH1_1528 Escherichia coli DH1 ABC transporter YP_006091486.1 1659452 D 536056 CDS YP_006091487.1 386595087 12705122 1660383..1661114 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E0845 ABC transporter, quaternary amine uptake (QAT) family, permease protein; binding-protein-dependent transport system inner membrane protein 1661114 12705122 EcDH1_1529 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006091487.1 1660383 D 536056 CDS YP_006091488.1 386595088 12705123 complement(1661095..1661202) 1 NC_017625.1 KEGG: sdy:SDY_2161 hypothetical protein; hypothetical protein 1661202 12705123 EcDH1_1530 Escherichia coli DH1 hypothetical protein YP_006091488.1 1661095 R 536056 CDS YP_006091489.1 386595089 12705124 complement(1661262..1661993) 1 NC_017625.1 PFAM: regulatory protein MerR; KEGG: sdy:SDY_2162 putative transcriptional regulator; MerR family transcriptional regulator 1661993 12705124 EcDH1_1531 Escherichia coli DH1 MerR family transcriptional regulator YP_006091489.1 1661262 R 536056 CDS YP_006091490.1 386595090 12705125 1662215..1663900 1 NC_017625.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: sfx:S2325 putative 2-component sensor protein; signal transduction histidine kinase LytS 1663900 12705125 EcDH1_1532 Escherichia coli DH1 signal transduction histidine kinase LytS YP_006091490.1 1662215 D 536056 CDS YP_006091491.1 386595091 12705126 1663897..1664616 1 NC_017625.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sbo:SBO_0948 putative two-component response-regulatory protein YehT; LytTR family two component transcriptional regulator 1664616 12705126 EcDH1_1533 Escherichia coli DH1 LytTR family two component transcriptional regulator YP_006091491.1 1663897 D 536056 CDS YP_006091492.1 386595092 12705127 1664663..1665133 1 NC_017625.1 PFAM: protein of unknown function DUF1456; KEGG: sdy:SDY_2165 hypothetical protein; hypothetical protein 1665133 12705127 EcDH1_1534 Escherichia coli DH1 hypothetical protein YP_006091492.1 1664663 D 536056 CDS YP_006091493.1 386595093 12705128 complement(1665173..1665634) 1 NC_017625.1 PFAM: protein of unknown function DUF1307; KEGG: ssn:SSON_2169 hypothetical protein; hypothetical protein 1665634 12705128 EcDH1_1535 Escherichia coli DH1 hypothetical protein YP_006091493.1 1665173 R 536056 CDS YP_006091494.1 386595094 12705129 complement(1665915..1667759) 1 NC_017625.1 PFAM: zinc finger SWIM domain protein; KEGG: ssn:SSON_2168 hypothetical protein; zinc finger SWIM domain-containing protein 1667759 12705129 EcDH1_1536 Escherichia coli DH1 zinc finger SWIM domain-containing protein YP_006091494.1 1665915 R 536056 CDS YP_006091495.1 386595095 12705130 complement(1667756..1668892) 1 NC_017625.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: sbo:SBO_0944 hypothetical protein; VWA containing CoxE family protein 1668892 12705130 EcDH1_1537 Escherichia coli DH1 VWA containing CoxE family protein YP_006091495.1 1667756 R 536056 CDS YP_006091496.1 386595096 12705131 complement(1668885..1671164) 1 NC_017625.1 KEGG: sbo:SBO_0943 hypothetical protein; hypothetical protein 1671164 12705131 EcDH1_1538 Escherichia coli DH1 hypothetical protein YP_006091496.1 1668885 R 536056 CDS YP_006091497.1 386595097 12705132 complement(1671175..1672263) 1 NC_017625.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfx:S2313 hypothetical protein; ATPase 1672263 12705132 EcDH1_1539 Escherichia coli DH1 ATPase YP_006091497.1 1671175 R 536056 CDS YP_006091498.1 386595098 12705133 complement(1672570..1672887) 1 NC_017625.1 KEGG: sfl:SF2187 hypothetical protein; hypothetical protein 1672887 12705133 EcDH1_1540 Escherichia coli DH1 hypothetical protein YP_006091498.1 1672570 R 536056 CDS YP_006091499.1 386595099 12705134 complement(1672948..1676580) 1 NC_017625.1 KEGG: sbo:SBO_0938 putative regulator; putative regulator 1676580 12705134 EcDH1_1541 Escherichia coli DH1 putative regulator YP_006091499.1 1672948 R 536056 CDS YP_006091500.1 386595100 12705136 complement(1680526..1682559) 1 NC_017625.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: sbo:SBO_0929 methionyl-tRNA synthetase; methionyl-tRNA synthetase 1682559 12705136 EcDH1_1543 Escherichia coli DH1 methionyl-tRNA synthetase YP_006091500.1 1680526 R 536056 CDS YP_006091501.1 386595101 12705137 1682691..1683800 1 NC_017625.1 PFAM: Mrp protein; KEGG: sbc:SbBS512_E0855 mrp protein; Mrp protein 1683800 12705137 EcDH1_1544 Escherichia coli DH1 Mrp protein YP_006091501.1 1682691 D 536056 CDS YP_006091502.1 386595102 12705138 1684063..1684344 1 NC_017625.1 KEGG: ssn:SSON_2161 hypothetical protein; hypothetical protein 1684344 12705138 EcDH1_1545 Escherichia coli DH1 hypothetical protein YP_006091502.1 1684063 D 536056 CDS YP_006091503.1 386595103 12705139 1684637..1685179 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: ssn:SSON_2160 putative fimbrial-like protein; Fimbrial protein 1685179 12705139 EcDH1_1546 Escherichia coli DH1 Fimbrial protein YP_006091503.1 1684637 D 536056 CDS YP_006091504.1 386595104 12705140 1685259..1685933 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_2159 putative chaperone; Pili assembly chaperone, N-terminal 1685933 12705140 EcDH1_1547 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006091504.1 1685259 D 536056 CDS YP_006091505.1 386595105 12705141 1685949..1688429 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfv:SFV_2164 putative outer membrane protein; fimbrial biogenesis outer membrane usher protein 1688429 12705141 EcDH1_1548 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006091505.1 1685949 D 536056 CDS YP_006091506.1 386595106 12705142 1688445..1689479 1 NC_017625.1 KEGG: ssn:SSON_2156 putative type-1 fimbrial protein; putative type-1 fimbrial protein 1689479 12705142 EcDH1_1549 Escherichia coli DH1 putative type-1 fimbrial protein YP_006091506.1 1688445 D 536056 CDS YP_006091507.1 386595107 12705143 complement(1689561..1689899) 1 NC_017625.1 KEGG: sbc:SbBS512_E0850 hypothetical protein; hypothetical protein 1689899 12705143 EcDH1_1550 Escherichia coli DH1 hypothetical protein YP_006091507.1 1689561 R 536056 CDS YP_006091508.1 386595108 12705144 complement(1690118..1690942) 1 NC_017625.1 PFAM: high-affinity nickel-transporter; KEGG: ssn:SSON_2154 nickel/cobalt efflux protein RcnA; high-affinity nickel-transporter 1690942 12705144 EcDH1_1551 Escherichia coli DH1 high-affinity nickel-transporter YP_006091508.1 1690118 R 536056 CDS YP_006091509.1 386595109 12705145 1691063..1691335 1 NC_017625.1 PFAM: protein of unknown function DUF156; KEGG: sdy:SDY_2279 hypothetical protein; hypothetical protein 1691335 12705145 EcDH1_1552 Escherichia coli DH1 hypothetical protein YP_006091509.1 1691063 D 536056 CDS YP_006091510.1 386595110 12705146 1691558..1692346 1 NC_017625.1 PFAM: hydroxyethylthiazole kinase; KEGG: sfv:SFV_2159 hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 1692346 12705146 EcDH1_1553 Escherichia coli DH1 hydroxyethylthiazole kinase YP_006091510.1 1691558 D 536056 CDS YP_006091511.1 386595111 12705147 1692343..1693143 1 NC_017625.1 KEGG: sbc:SbBS512_E1135 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1693143 12705147 EcDH1_1554 Escherichia coli DH1 phosphomethylpyrimidine kinase YP_006091511.1 1692343 D 536056 CDS YP_006091512.1 386595112 12705148 1693208..1694026 1 NC_017625.1 PFAM: glycoside hydrolase family 25; KEGG: sbo:SBO_0923 hypothetical protein; glycoside hydrolase family protein 1694026 12705148 EcDH1_1555 Escherichia coli DH1 glycoside hydrolase family protein YP_006091512.1 1693208 D 536056 CDS YP_006091513.1 386595113 12705149 1694078..1694824 1 NC_017625.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sdy:SDY_2274 putative transcriptional regulator; GntR family transcriptional regulator 1694824 12705149 EcDH1_1556 Escherichia coli DH1 GntR family transcriptional regulator YP_006091513.1 1694078 D 536056 CDS YP_006091514.1 386595114 12705150 complement(1694798..1695763) 1 NC_017625.1 PFAM: PfkB domain protein; KEGG: sbo:SBO_0921 putative kinase; PfkB domain-containing protein 1695763 12705150 EcDH1_1557 Escherichia coli DH1 PfkB domain-containing protein YP_006091514.1 1694798 R 536056 CDS YP_006091515.1 386595115 12705151 complement(1695760..1696764) 1 NC_017625.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: ssn:SSON_2147 hypothetical protein; ADP-ribosylation/Crystallin J1 1696764 12705151 EcDH1_1558 Escherichia coli DH1 ADP-ribosylation/Crystallin J1 YP_006091515.1 1695760 R 536056 CDS YP_006091516.1 386595116 12705152 complement(1696761..1698038) 1 NC_017625.1 TIGRFAM: nucleoside transporter; PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1140 nucleoside transporter; nucleoside transporter 1698038 12705152 EcDH1_1559 Escherichia coli DH1 nucleoside transporter YP_006091516.1 1696761 R 536056 CDS YP_006091517.1 386595117 12705153 1698295..1699347 1 NC_017625.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sdy:SDY_2270 fructose-bisphosphate aldolase; Fructose-bisphosphate aldolase 1699347 12705153 EcDH1_1560 Escherichia coli DH1 Fructose-bisphosphate aldolase YP_006091517.1 1698295 D 536056 CDS YP_006091518.1 386595118 12705154 1699655..1700509 1 NC_017625.1 KEGG: sbc:SbBS512_E1142 class II aldolase, tagatose bisphosphate family; TIGRFAM: ketose-bisphosphate aldolase; class II aldolase, tagatose bisphosphate family; PFAM: ketose-bisphosphate aldolase class-II; tagatose bisphosphate family class II aldolase 1700509 12705154 EcDH1_1561 Escherichia coli DH1 tagatose bisphosphate family class II aldolase YP_006091518.1 1699655 D 536056 CDS YP_006091519.1 386595119 12705155 1700538..1701800 1 NC_017625.1 KEGG: sbc:SbBS512_E1143 putative tagatose-6-phosphate kinase; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit 1701800 12705155 EcDH1_1562 Escherichia coli DH1 D-tagatose-bisphosphate aldolase non-catalytic subunit YP_006091519.1 1700538 D 536056 CDS YP_006091520.1 386595120 12705156 1701810..1702262 1 NC_017625.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sbo:SBO_0915 galactitol-specific PTS system component IIA; putative PTS IIA-like nitrogen-regulatory protein PtsN 1702262 12705156 EcDH1_1563 Escherichia coli DH1 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_006091520.1 1701810 D 536056 CDS YP_006091521.1 386595121 12705158 complement(1702647..1703627) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 1703627 12705158 EcDH1_1565 Escherichia coli DH1 transposase IS4 family protein YP_006091521.1 1702647 R 536056 CDS YP_006091522.1 386595122 12705159 1703780..1705135 1 NC_017625.1 TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component; KEGG: sbc:SbBS512_E1146 PTS system, galactitol-specific IIC component; PTS system galactitol-specific transporter subunit IIC 1705135 12705159 EcDH1_1566 Escherichia coli DH1 PTS system galactitol-specific transporter subunit IIC YP_006091522.1 1703780 D 536056 CDS YP_006091523.1 386595123 12705160 1705183..1706223 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbo:SBO_0912 galactitol-1-phosphate dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 1706223 12705160 EcDH1_1567 Escherichia coli DH1 alcohol dehydrogenase GroES domain-containing protein YP_006091523.1 1705183 D 536056 CDS YP_006091524.1 386595124 12705162 complement(1706658..1707524) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit 1707524 12705162 EcDH1_1569 Escherichia coli DH1 integrase catalytic subunit YP_006091524.1 1706658 R 536056 CDS YP_006091525.1 386595125 12705163 complement(1707521..1707820) 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein 1707820 12705163 EcDH1_1570 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006091525.1 1707521 R 536056 CDS YP_006091526.1 386595126 12705164 complement(1708445..1709344) 1 NC_017625.1 PFAM: diacylglycerol kinase catalytic region; KEGG: sdy:SDY_2261 lipid kinase; diacylglycerol kinase catalytic subunit 1709344 12705164 EcDH1_1571 Escherichia coli DH1 diacylglycerol kinase catalytic subunit YP_006091526.1 1708445 R 536056 CDS YP_006091527.1 386595127 12705165 1709750..1710067 1 NC_017625.1 KEGG: sbo:SBO_0909 hypothetical protein; hypothetical protein 1710067 12705165 EcDH1_1572 Escherichia coli DH1 hypothetical protein YP_006091527.1 1709750 D 536056 CDS YP_006091528.1 386595128 12705167 1710536..1710754 1 NC_017625.1 PFAM: transcriptional activator Ogr/delta; KEGG: ent:Ent638_3475 DNA-binding transcriptional regulator; transcriptional activator Ogr/delta 1710754 12705167 EcDH1_1574 Escherichia coli DH1 transcriptional activator Ogr/delta YP_006091528.1 1710536 D 536056 CDS YP_006091529.1 386595129 12705168 complement(1711027..1712388) 1 NC_017625.1 PFAM: peptidase U32; KEGG: sbc:SbBS512_E1150 peptidase, U32 family; peptidase U32 1712388 12705168 EcDH1_1575 Escherichia coli DH1 peptidase U32 YP_006091529.1 1711027 R 536056 CDS YP_006091530.1 386595130 12705169 complement(1712535..1712867) 1 NC_017625.1 PFAM: protein of unknown function DUF1508; KEGG: sbc:SbBS512_E1153 hypothetical protein; hypothetical protein 1712867 12705169 EcDH1_1576 Escherichia coli DH1 hypothetical protein YP_006091530.1 1712535 R 536056 CDS YP_006091531.1 386595131 12705170 complement(1713058..1713780) 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_2186 DNA-binding response regulator in two-component regulatory system with BaeS; winged helix family two component transcriptional regulator 1713780 12705170 EcDH1_1577 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006091531.1 1713058 R 536056 CDS YP_006091532.1 386595132 12705171 complement(1713777..1715180) 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sbc:SbBS512_E1155 sensor histidine kinase BaeS; histidine kinase 1715180 12705171 EcDH1_1578 Escherichia coli DH1 histidine kinase YP_006091532.1 1713777 R 536056 CDS YP_006091533.1 386595133 12705172 complement(1715177..1716592) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1156 multidrug resistance protein MdtD; major facilitator superfamily protein 1716592 12705172 EcDH1_1579 Escherichia coli DH1 major facilitator superfamily protein YP_006091533.1 1715177 R 536056 CDS YP_006091534.1 386595134 12705173 complement(1716593..1719670) 1 NC_017625.1 PFAM: acriflavin resistance protein; KEGG: ssn:SSON_2128 multidrug efflux system subunit MdtC; acriflavin resistance protein 1719670 12705173 EcDH1_1580 Escherichia coli DH1 acriflavin resistance protein YP_006091534.1 1716593 R 536056 CDS YP_006091535.1 386595135 12705174 complement(1719671..1722793) 1 NC_017625.1 PFAM: acriflavin resistance protein; KEGG: sbo:SBO_0901 multidrug efflux system subunit MdtB; acriflavin resistance protein 1722793 12705174 EcDH1_1581 Escherichia coli DH1 acriflavin resistance protein YP_006091535.1 1719671 R 536056 CDS YP_006091536.1 386595136 12705175 complement(1722793..1724040) 1 NC_017625.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E1159 multidrug resistance protein MdtA; RND family efflux transporter MFP subunit 1724040 12705175 EcDH1_1582 Escherichia coli DH1 RND family efflux transporter MFP subunit YP_006091536.1 1722793 R 536056 CDS YP_006091537.1 386595137 12705176 complement(1724210..1724356) 1 NC_017625.1 hypothetical protein 1724356 12705176 EcDH1_1583 Escherichia coli DH1 hypothetical protein YP_006091537.1 1724210 R 536056 CDS YP_006091538.1 386595138 12705177 1724928..1725587 1 NC_017625.1 PFAM: von Willebrand factor type A; KEGG: sbo:SBO_0899 hypothetical protein; von Willebrand factor type A 1725587 12705177 EcDH1_1584 Escherichia coli DH1 von Willebrand factor type A YP_006091538.1 1724928 D 536056 CDS YP_006091539.1 386595139 12705178 1725584..1726345 1 NC_017625.1 KEGG: ssn:SSON_2124 hypothetical protein; hypothetical protein 1726345 12705178 EcDH1_1585 Escherichia coli DH1 hypothetical protein YP_006091539.1 1725584 D 536056 CDS YP_006091540.1 386595140 12705179 complement(1726410..1726871) 1 NC_017625.1 KEGG: mlo:mlr2620 hypothetical protein; hypothetical protein 1726871 12705179 EcDH1_1586 Escherichia coli DH1 hypothetical protein YP_006091540.1 1726410 R 536056 CDS YP_006091541.1 386595141 12705180 1727071..1729017 1 NC_017625.1 KEGG: ssn:SSON_2123 putative chaperonin; putative chaperonin 1729017 12705180 EcDH1_1587 Escherichia coli DH1 putative chaperonin YP_006091541.1 1727071 D 536056 CDS YP_006091542.1 386595142 12705181 complement(1729030..1730382) 1 NC_017625.1 KEGG: sfv:SFV_2130 putative chaperone; putative chaperone 1730382 12705181 EcDH1_1588 Escherichia coli DH1 putative chaperone YP_006091542.1 1729030 R 536056 CDS YP_006091543.1 386595143 12705182 1730516..1731364 1 NC_017625.1 PFAM: HhH-GPD family protein; AlkA domain protein; KEGG: sdy:SDY_2194 3-methyl-adenine DNA glycosylase II; DNA-3-methyladenine glycosylase II 1731364 12705182 EcDH1_1589 Escherichia coli DH1 DNA-3-methyladenine glycosylase II YP_006091543.1 1730516 D 536056 CDS YP_006091544.1 386595144 12705183 complement(1731473..1734790) 1 NC_017625.1 KEGG: ssn:SSON_2120 putative sensor-type protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1734790 12705183 EcDH1_1590 Escherichia coli DH1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_006091544.1 1731473 R 536056 CDS YP_006091545.1 386595145 12705184 1735108..1735749 1 NC_017625.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: sdy:SDY_2196 uridine kinase; uridine kinase 1735749 12705184 EcDH1_1591 Escherichia coli DH1 uridine kinase YP_006091545.1 1735108 D 536056 CDS YP_006091546.1 386595146 12705185 1735841..1736422 1 NC_017625.1 KEGG: sbc:SbBS512_E1167 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; deoxycytidine triphosphate deaminase 1736422 12705185 EcDH1_1592 Escherichia coli DH1 deoxycytidine triphosphate deaminase YP_006091546.1 1735841 D 536056 CDS YP_006091547.1 386595147 12705186 1736444..1738297 1 NC_017625.1 PFAM: AsmA family protein; KEGG: sbc:SbBS512_E1168 AsmA protein; AsmA family protein 1738297 12705186 EcDH1_1593 Escherichia coli DH1 AsmA family protein YP_006091547.1 1736444 D 536056 CDS YP_006091548.1 386595148 12705187 complement(1738571..1740154) 1 NC_017625.1 PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: sfv:SFV_2122 putative transport protein; integral membrane protein TerC 1740154 12705187 EcDH1_1594 Escherichia coli DH1 integral membrane protein TerC YP_006091548.1 1738571 R 536056 CDS YP_006091549.1 386595149 12705188 1740813..1741952 1 NC_017625.1 PFAM: polysaccharide export protein; KEGG: sbc:SbBS512_E1170 polysaccharide biosynthesis/export protein; polysaccharide export protein 1741952 12705188 EcDH1_1595 Escherichia coli DH1 polysaccharide export protein YP_006091549.1 1740813 D 536056 CDS YP_006091550.1 386595150 12705189 1741958..1742401 1 NC_017625.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: sbc:SbBS512_E1171 low molecular weight protein-tyrosine-phosphatase wzb; protein tyrosine phosphatase 1742401 12705189 EcDH1_1596 Escherichia coli DH1 protein tyrosine phosphatase YP_006091550.1 1741958 D 536056 CDS YP_006091551.1 386595151 12705190 1742404..1744566 1 NC_017625.1 KEGG: sbc:SbBS512_E1172 tyrosine-protein kinase wzc; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family protein 1744566 12705190 EcDH1_1597 Escherichia coli DH1 capsular exopolysaccharide family protein YP_006091551.1 1742404 D 536056 CDS YP_006091552.1 386595152 12705191 1744659..1745498 1 NC_017625.1 PFAM: glycosyl transferase family 2; KEGG: sbo:SBO_0886 predicted glycosyl transferase; family 2 glycosyl transferase 1745498 12705191 EcDH1_1598 Escherichia coli DH1 family 2 glycosyl transferase YP_006091552.1 1744659 D 536056 CDS YP_006091553.1 386595153 12705192 1745501..1745989 1 NC_017625.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: ssn:SSON_2111 putative colanic acid biosynthesis acetyltransferase WcaB; transferase hexapeptide repeat containing protein 1745989 12705192 EcDH1_1599 Escherichia coli DH1 transferase hexapeptide repeat containing protein YP_006091553.1 1745501 D 536056 CDS YP_006091554.1 386595154 12705193 1745986..1747203 1 NC_017625.1 KEGG: sbc:SbBS512_E1175 colanic acid biosynthesis glycosyl transferase WcaC; colanic acid biosynthesis glycosyl transferase WcaC 1747203 12705193 EcDH1_1600 Escherichia coli DH1 colanic acid biosynthesis glycosyl transferase WcaC YP_006091554.1 1745986 D 536056 CDS YP_006091555.1 386595155 12705194 1747178..1748395 1 NC_017625.1 KEGG: sbc:SbBS512_E1176 colanic acid polymerase WcaD; colanic acid polymerase WcaD 1748395 12705194 EcDH1_1601 Escherichia coli DH1 colanic acid polymerase WcaD YP_006091555.1 1747178 D 536056 CDS YP_006091556.1 386595156 12705195 1748406..1749152 1 NC_017625.1 PFAM: glycosyl transferase family 2; KEGG: sbc:SbBS512_E1177 colanic acid biosynthesis glycosyl transferase WcaE; family 2 glycosyl transferase 1749152 12705195 EcDH1_1602 Escherichia coli DH1 family 2 glycosyl transferase YP_006091556.1 1748406 D 536056 CDS YP_006091557.1 386595157 12705196 1749168..1749716 1 NC_017625.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sbc:SbBS512_E1178 putative colanic acid biosynthesis acetyltransferase WcaF; transferase hexapeptide repeat containing protein 1749716 12705196 EcDH1_1603 Escherichia coli DH1 transferase hexapeptide repeat containing protein YP_006091557.1 1749168 D 536056 CDS YP_006091558.1 386595158 12705197 1749742..1750863 1 NC_017625.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: sbc:SbBS512_E1179 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 1750863 12705197 EcDH1_1604 Escherichia coli DH1 GDP-mannose 4,6-dehydratase YP_006091558.1 1749742 D 536056 CDS YP_006091559.1 386595159 12705198 1750866..1751831 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2105 putative nucleotide di-P-sugar epimerase or dehydratase; NAD-dependent epimerase/dehydratase 1751831 12705198 EcDH1_1605 Escherichia coli DH1 NAD-dependent epimerase/dehydratase YP_006091559.1 1750866 D 536056 CDS YP_006091560.1 386595160 12705199 1751831..1752313 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: ssn:SSON_2104 GDP-mannose mannosyl hydrolase; NUDIX hydrolase 1752313 12705199 EcDH1_1606 Escherichia coli DH1 NUDIX hydrolase YP_006091560.1 1751831 D 536056 CDS YP_006091561.1 386595161 12705200 1752310..1753533 1 NC_017625.1 PFAM: glycosyl transferase group 1; KEGG: ssn:SSON_2103 predicted glycosyl transferase; group 1 glycosyl transferase 1753533 12705200 EcDH1_1607 Escherichia coli DH1 group 1 glycosyl transferase YP_006091561.1 1752310 D 536056 CDS YP_006091562.1 386595162 12705201 1753536..1754972 1 NC_017625.1 KEGG: sbc:SbBS512_E1183 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1754972 12705201 EcDH1_1608 Escherichia coli DH1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_006091562.1 1753536 D 536056 CDS YP_006091563.1 386595163 12705202 1755077..1756447 1 NC_017625.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sbc:SbBS512_E1184 phosphomannomutase; phosphomannomutase 1756447 12705202 EcDH1_1609 Escherichia coli DH1 phosphomannomutase YP_006091563.1 1755077 D 536056 CDS YP_006091564.1 386595164 12705203 1756502..1757896 1 NC_017625.1 KEGG: sbo:SBO_0874 putative UDP-glucose lipid carrier transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 1757896 12705203 EcDH1_1610 Escherichia coli DH1 undecaprenyl-phosphate glucose phosphotransferase YP_006091564.1 1756502 D 536056 CDS YP_006091565.1 386595165 12705204 1757898..1759376 1 NC_017625.1 PFAM: polysaccharide biosynthesis protein; KEGG: sbc:SbBS512_E1186 polysaccharide biosynthesis protein WzxC; polysaccharide biosynthesis protein 1759376 12705204 EcDH1_1611 Escherichia coli DH1 polysaccharide biosynthesis protein YP_006091565.1 1757898 D 536056 CDS YP_006091566.1 386595166 12705205 1759652..1760932 1 NC_017625.1 PFAM: polysaccharide pyruvyl transferase; KEGG: sbo:SBO_0872 putative pyruvyl transferase; polysaccharide pyruvyl transferase 1760932 12705205 EcDH1_1612 Escherichia coli DH1 polysaccharide pyruvyl transferase YP_006091566.1 1759652 D 536056 CDS YP_006091567.1 386595167 12705206 1760929..1762149 1 NC_017625.1 PFAM: glycosyl transferase group 1; KEGG: sbo:SBO_0871 putative colanic acid biosynthesis glycosyl transferase; group 1 glycosyl transferase 1762149 12705206 EcDH1_1613 Escherichia coli DH1 group 1 glycosyl transferase YP_006091567.1 1760929 D 536056 CDS YP_006091568.1 386595168 12705207 1762160..1763554 1 NC_017625.1 KEGG: sbo:SBO_0870 hypothetical protein; hypothetical protein 1763554 12705207 EcDH1_1614 Escherichia coli DH1 hypothetical protein YP_006091568.1 1762160 D 536056 CDS YP_006091569.1 386595169 12705208 1763729..1764622 1 NC_017625.1 KEGG: sbc:SbBS512_E1191 regulatory protein GalF; TIGRFAM: regulatory protein GalF; PFAM: Nucleotidyl transferase; regulatory protein GalF 1764622 12705208 EcDH1_1615 Escherichia coli DH1 regulatory protein GalF YP_006091569.1 1763729 D 536056 CDS YP_006091570.1 386595170 12705209 1764995..1766080 1 NC_017625.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sbo:SBO_0868 dTDP-glucose 4,6 dehydratase; dTDP-glucose 4,6-dehydratase 1766080 12705209 EcDH1_1616 Escherichia coli DH1 dTDP-glucose 4,6-dehydratase YP_006091570.1 1764995 D 536056 CDS YP_006091571.1 386595171 12705210 1766080..1766937 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sbc:SbBS512_E1193 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1766937 12705210 EcDH1_1617 Escherichia coli DH1 dTDP-4-dehydrorhamnose reductase YP_006091571.1 1766080 D 536056 CDS YP_006091572.1 386595172 12705211 1767036..1767917 1 NC_017625.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sbo:SBO_0866 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1767917 12705211 EcDH1_1618 Escherichia coli DH1 glucose-1-phosphate thymidylyltransferase YP_006091572.1 1767036 D 536056 CDS YP_006091573.1 386595173 12705212 1767917..1768474 1 NC_017625.1 KEGG: sbc:SbBS512_E1195 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1768474 12705212 EcDH1_1619 Escherichia coli DH1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_006091573.1 1767917 D 536056 CDS YP_006091574.1 386595174 12705213 1768471..1769718 1 NC_017625.1 PFAM: polysaccharide biosynthesis protein; KEGG: gka:GK3317 O-antigen transporter; polysaccharide biosynthesis protein 1769718 12705213 EcDH1_1620 Escherichia coli DH1 polysaccharide biosynthesis protein YP_006091574.1 1768471 D 536056 CDS YP_006091575.1 386595175 12705214 1769726..1770829 1 NC_017625.1 KEGG: pin:Ping_2040 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase 1770829 12705214 EcDH1_1621 Escherichia coli DH1 UDP-galactopyranose mutase YP_006091575.1 1769726 D 536056 CDS YP_006091576.1 386595176 12705215 1770829..1771995 1 NC_017625.1 KEGG: spv:SPH_0463 polysaccharide polymerase Cps19aI; hypothetical protein 1771995 12705215 EcDH1_1622 Escherichia coli DH1 hypothetical protein YP_006091576.1 1770829 D 536056 CDS YP_006091577.1 386595177 12705216 1771998..1772990 1 NC_017625.1 KEGG: lsl:LSL_0694 hypothetical protein; hypothetical protein 1772990 12705216 EcDH1_1623 Escherichia coli DH1 hypothetical protein YP_006091577.1 1771998 D 536056 CDS YP_006091578.1 386595178 12705217 1772971..1773561 1 NC_017625.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rfr:Rfer_1258 transferase hexapeptide protein; transferase hexapeptide repeat containing protein 1773561 12705217 EcDH1_1624 Escherichia coli DH1 transferase hexapeptide repeat containing protein YP_006091578.1 1772971 D 536056 CDS YP_006091579.1 386595179 12705218 1773546..1774664 1 NC_017625.1 PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_1259 glycosyl transferase, group 1; group 1 glycosyl transferase 1774664 12705218 EcDH1_1625 Escherichia coli DH1 group 1 glycosyl transferase YP_006091579.1 1773546 D 536056 CDS YP_006091580.1 386595180 12705220 1775180..1776160 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 1776160 12705220 EcDH1_1627 Escherichia coli DH1 transposase IS4 family protein YP_006091580.1 1775180 D 536056 CDS YP_006091581.1 386595181 12705221 1776787..1778193 1 NC_017625.1 KEGG: sdy:SDY_2212 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase 1778193 12705221 EcDH1_1628 Escherichia coli DH1 6-phosphogluconate dehydrogenase YP_006091581.1 1776787 D 536056 CDS YP_006091582.1 386595182 12705222 1778442..1779608 1 NC_017625.1 KEGG: ssn:SSON_2099 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1779608 12705222 EcDH1_1629 Escherichia coli DH1 nucleotide sugar dehydrogenase YP_006091582.1 1778442 D 536056 CDS YP_006091583.1 386595183 12705223 1779754..1780734 1 NC_017625.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: ssn:SSON_2098 regulator of length of O-antigen component of lipopolysaccharide chains; lipopolysaccharide biosynthesis protein 1780734 12705223 EcDH1_1630 Escherichia coli DH1 lipopolysaccharide biosynthesis protein YP_006091583.1 1779754 D 536056 CDS YP_006091584.1 386595184 12705224 complement(1780830..1781441) 1 NC_017625.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: ssn:SSON_2097 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; phosphoribosyl-ATP diphosphatase 1781441 12705224 EcDH1_1631 Escherichia coli DH1 phosphoribosyl-ATP diphosphatase YP_006091584.1 1780830 R 536056 CDS YP_006091585.1 386595185 12705225 complement(1781435..1782211) 1 NC_017625.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: sdy:SDY_2216 imidazole glycerol phosphate synthase subunit HisF; Imidazole glycerol phosphate synthase cyclase subunit 1782211 12705225 EcDH1_1632 Escherichia coli DH1 Imidazole glycerol phosphate synthase cyclase subunit YP_006091585.1 1781435 R 536056 CDS YP_006091586.1 386595186 12705226 complement(1782193..1782930) 1 NC_017625.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; histidine biosynthesis protein; KEGG: sdy:SDY_2217 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 1782930 12705226 EcDH1_1633 Escherichia coli DH1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_006091586.1 1782193 R 536056 CDS YP_006091587.1 386595187 12705227 complement(1782930..1783520) 1 NC_017625.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: sdy:SDY_2218 imidazole glycerol phosphate synthase subunit HisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 1783520 12705227 EcDH1_1634 Escherichia coli DH1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_006091587.1 1782930 R 536056 CDS YP_006091588.1 386595188 12705228 complement(1783520..1784587) 1 NC_017625.1 KEGG: sbc:SbBS512_E1210 histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: imidazoleglycerol-phosphate dehydratase; Polynucleotide kinase 3 phosphatase central region; histidinol-phosphatase 1784587 12705228 EcDH1_1635 Escherichia coli DH1 histidinol-phosphatase YP_006091588.1 1783520 R 536056 CDS YP_006091589.1 386595189 12705229 complement(1784587..1785657) 1 NC_017625.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E1211 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 1785657 12705229 EcDH1_1636 Escherichia coli DH1 histidinol-phosphate aminotransferase YP_006091589.1 1784587 R 536056 CDS YP_006091590.1 386595190 12705230 complement(1785654..1786958) 1 NC_017625.1 PFAM: histidinol dehydrogenase; KEGG: sbc:SbBS512_E1212 histidinol dehydrogenase; histidinol dehydrogenase 1786958 12705230 EcDH1_1637 Escherichia coli DH1 histidinol dehydrogenase YP_006091590.1 1785654 R 536056 CDS YP_006091591.1 386595191 12705231 complement(1786964..1787863) 1 NC_017625.1 KEGG: sbc:SbBS512_E1213 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 1787863 12705231 EcDH1_1638 Escherichia coli DH1 ATP phosphoribosyltransferase YP_006091591.1 1786964 R 536056 CDS YP_006091592.1 386595192 12705232 1788342..1788593 1 NC_017625.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sbc:SbBS512_E1214 antitoxin YefM; prevent-host-death family protein 1788593 12705232 EcDH1_1639 Escherichia coli DH1 prevent-host-death family protein YP_006091592.1 1788342 D 536056 CDS YP_006091593.1 386595193 12705233 1788590..1788844 1 NC_017625.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: sbc:SbBS512_E1215 toxin YoeB; Txe/YoeB family addiction module toxin 1788844 12705233 EcDH1_1640 Escherichia coli DH1 Txe/YoeB family addiction module toxin YP_006091593.1 1788590 D 536056 CDS YP_006091594.1 386595194 12705234 1788927..1789751 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2086 putative enzyme of sugar metabolism; NAD-dependent epimerase/dehydratase 1789751 12705234 EcDH1_1641 Escherichia coli DH1 NAD-dependent epimerase/dehydratase YP_006091594.1 1788927 D 536056 CDS YP_006091595.1 386595195 12705235 1789776..1790726 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_2085 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 1790726 12705235 EcDH1_1642 Escherichia coli DH1 LysR family transcriptional regulator YP_006091595.1 1789776 D 536056 CDS YP_006091596.1 386595196 12705236 1790993..1792351 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2226 putative amino acid/amine transport protein; amino acid permease 1792351 12705236 EcDH1_1643 Escherichia coli DH1 amino acid permease YP_006091596.1 1790993 D 536056 CDS YP_006091597.1 386595197 12705237 1792584..1793588 1 NC_017625.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ssn:SSON_2083 putative transport system permease protein; hypothetical protein 1793588 12705237 EcDH1_1644 Escherichia coli DH1 hypothetical protein YP_006091597.1 1792584 D 536056 CDS YP_006091598.1 386595198 12705238 1793602..1793829 1 NC_017625.1 PFAM: SirA family protein; KEGG: sbc:SbBS512_E1220 hypothetical protein; SirA family protein 1793829 12705238 EcDH1_1645 Escherichia coli DH1 SirA family protein YP_006091598.1 1793602 D 536056 CDS YP_006091599.1 386595199 12705239 complement(1793872..1795299) 1 NC_017625.1 KEGG: sbc:SbBS512_E1221 exodeoxyribonuclease I; PFAM: Exonuclease RNase T and DNA polymerase III; Exonuclease domain protein; SMART: Exonuclease; Exodeoxyribonuclease I 1795299 12705239 EcDH1_1646 Escherichia coli DH1 Exodeoxyribonuclease I YP_006091599.1 1793872 R 536056 CDS YP_006091600.1 386595200 12705240 1795508..1796674 1 NC_017625.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: ssn:SSON_2080 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 1796674 12705240 EcDH1_1647 Escherichia coli DH1 serine-type D-Ala-D-Ala carboxypeptidase YP_006091600.1 1795508 D 536056 CDS YP_006091601.1 386595201 12705241 1796793..1797266 1 NC_017625.1 PFAM: transcription activator effector binding; KEGG: sbc:SbBS512_E1226 DNA gyrase inhibitory protein; transcription activator effector binding protein 1797266 12705241 EcDH1_1648 Escherichia coli DH1 transcription activator effector binding protein YP_006091601.1 1796793 D 536056 CDS YP_006091602.1 386595202 12705242 1797464..1798522 1 NC_017625.1 KEGG: ssn:SSON_2078 hypothetical protein; hypothetical protein 1798522 12705242 EcDH1_1649 Escherichia coli DH1 hypothetical protein YP_006091602.1 1797464 D 536056 CDS YP_006091603.1 386595203 12705243 1798694..1799023 1 NC_017625.1 PFAM: protein of unknown function DUF496; KEGG: sbc:SbBS512_E1230 hypothetical protein; hypothetical protein 1799023 12705243 EcDH1_1650 Escherichia coli DH1 hypothetical protein YP_006091603.1 1798694 D 536056 CDS YP_006091604.1 386595204 12705244 complement(1799921..1800115) 1 NC_017625.1 KEGG: sfx:S3205 hypothetical protein; hypothetical protein 1800115 12705244 EcDH1_1651 Escherichia coli DH1 hypothetical protein YP_006091604.1 1799921 R 536056 CDS YP_006091605.1 386595205 12705245 complement(1800112..1800486) 1 NC_017625.1 PFAM: protein of unknown function DUF1219; KEGG: sbc:SbBS512_E1128 hypothetical protein; hypothetical protein 1800486 12705245 EcDH1_1652 Escherichia coli DH1 hypothetical protein YP_006091605.1 1800112 R 536056 CDS YP_006091606.1 386595206 12705246 complement(1800575..1800943) 1 NC_017625.1 PFAM: YagBYeeUYfjZ family protein; KEGG: sbc:SbBS512_E1127 hypothetical protein; YagBYeeUYfjZ family protein 1800943 12705246 EcDH1_1653 Escherichia coli DH1 YagBYeeUYfjZ family protein YP_006091606.1 1800575 R 536056 CDS YP_006091607.1 386595207 12705247 complement(1801017..1801238) 1 NC_017625.1 PFAM: protein of unknown function DUF987; KEGG: sbc:SbBS512_E1126 hypothetical protein; hypothetical protein 1801238 12705247 EcDH1_1654 Escherichia coli DH1 hypothetical protein YP_006091607.1 1801017 R 536056 CDS YP_006091608.1 386595208 12705248 complement(1801301..1801747) 1 NC_017625.1 PFAM: DNA repair protein RadC; KEGG: sbc:SbBS512_E1125 DNA repair protein, RadC family; DNA repair protein RadC 1801747 12705248 EcDH1_1655 Escherichia coli DH1 DNA repair protein RadC YP_006091608.1 1801301 R 536056 CDS YP_006091609.1 386595209 12705249 complement(1801744..1803276) 1 NC_017625.1 KEGG: sfx:S3196 hypothetical protein; hypothetical protein 1803276 12705249 EcDH1_1656 Escherichia coli DH1 hypothetical protein YP_006091609.1 1801744 R 536056 CDS YP_006091610.1 386595210 12705250 complement(1803397..1806516) 1 NC_017625.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sfl:SF2991 outer membrane fluffing protein; outer membrane autotransporter barrel domain-containing protein 1806516 12705250 EcDH1_1657 Escherichia coli DH1 outer membrane autotransporter barrel domain-containing protein YP_006091610.1 1803397 R 536056 CDS YP_006091611.1 386595211 12705251 complement(1806844..1807554) 1 NC_017625.1 KEGG: sfx:S3193 hypothetical protein; GTPase-like protein 1807554 12705251 EcDH1_1658 Escherichia coli DH1 GTPase-like protein YP_006091611.1 1806844 R 536056 CDS YP_006091612.1 386595212 12705253 1807875..1808240 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 1808240 12705253 EcDH1_1660 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006091612.1 1807875 D 536056 CDS YP_006091613.1 386595213 12705254 1808198..1809103 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 1809103 12705254 EcDH1_1661 Escherichia coli DH1 integrase catalytic subunit YP_006091613.1 1808198 D 536056 CDS YP_006091614.1 386595214 12705255 1810770..1811750 1 NC_017625.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 1811750 12705255 EcDH1_1662 Escherichia coli DH1 transposase IS4 family protein YP_006091614.1 1810770 D 536056 CDS YP_006091615.1 386595215 12705256 1812291..1812836 1 NC_017625.1 PFAM: cobalbumin biosynthesis protein; KEGG: sdy:SDY_2240 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; adenosylcobinamide-phosphate guanylyltransferase 1812836 12705256 EcDH1_1663 Escherichia coli DH1 adenosylcobinamide-phosphate guanylyltransferase YP_006091615.1 1812291 D 536056 CDS YP_006091616.1 386595216 12705257 1812833..1813576 1 NC_017625.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: sbc:SbBS512_E0966 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 1813576 12705257 EcDH1_1664 Escherichia coli DH1 cobalamin 5'-phosphate synthase YP_006091616.1 1812833 D 536056 CDS YP_006091617.1 386595217 12705258 1813588..1814667 1 NC_017625.1 KEGG: sfx:S2169 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1814667 12705258 EcDH1_1665 Escherichia coli DH1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_006091617.1 1813588 D 536056 CDS YP_006091618.1 386595218 12705259 1814729..1815664 1 NC_017625.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_2243 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1815664 12705259 EcDH1_1666 Escherichia coli DH1 ErfK/YbiS/YcfS/YnhG family protein YP_006091618.1 1814729 D 536056 CDS YP_006091619.1 386595219 12705261 1816122..1817039 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_2245 nitrogen assimilation transcriptional regulator; LysR family transcriptional regulator 1817039 12705261 EcDH1_1667 Escherichia coli DH1 LysR family transcriptional regulator YP_006091619.1 1816122 D 536056 CDS YP_006091620.1 386595220 12705262 1817141..1818091 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_2042 transcriptional regulator Cbl; LysR family transcriptional regulator 1818091 12705262 EcDH1_1668 Escherichia coli DH1 LysR family transcriptional regulator YP_006091620.1 1817141 D 536056 CDS YP_006091621.1 386595221 12705264 1818365..1819852 1 NC_017625.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ssn:SSON_2044 predicted multidrug efflux system; MATE efflux family protein 1819852 12705264 EcDH1_1669 Escherichia coli DH1 MATE efflux family protein YP_006091621.1 1818365 D 536056 CDS YP_006091622.1 386595222 12705266 complement(1820481..1821197) 1 NC_017625.1 PFAM: protein of unknown function DUF28; KEGG: sbo:SBO_1217 hypothetical protein; hypothetical protein 1821197 12705266 EcDH1_1670 Escherichia coli DH1 hypothetical protein YP_006091622.1 1820481 R 536056 CDS YP_006091623.1 386595223 12705267 complement(1821540..1822994) 1 NC_017625.1 KEGG: ssn:SSON_2047 AMP nucleosidase; TIGRFAM: AMP nucleosidase; PFAM: purine or other phosphorylase family 1; AMP nucleosidase 1822994 12705267 EcDH1_1671 Escherichia coli DH1 AMP nucleosidase YP_006091623.1 1821540 R 536056 CDS YP_006091624.1 386595224 12705268 complement(1823096..1824412) 1 NC_017625.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_2254 shikimate transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) 1824412 12705268 EcDH1_1672 Escherichia coli DH1 metabolite/H+ symporter, major facilitator superfamily (MFS) YP_006091624.1 1823096 R 536056 CDS YP_006091625.1 386595225 12705270 complement(1826041..1833117) 1 NC_017625.1 PFAM: Ig domain protein group 1 domain protein; SMART: PKD domain containing protein; KEGG: pmr:PMI0023 intimin/invasin; Ig domain-containing protein group 1 domain-containing protein 1833117 12705270 EcDH1_1674 Escherichia coli DH1 Ig domain-containing protein group 1 domain-containing protein YP_006091625.1 1826041 R 536056 CDS YP_006091626.1 386595226 12705271 complement(1833158..1833307) 1 NC_017625.1 hypothetical protein 1833307 12705271 EcDH1_1675 Escherichia coli DH1 hypothetical protein YP_006091626.1 1833158 R 536056 CDS YP_006091627.1 386595227 12705273 complement(1833607..1834404) 1 NC_017625.1 PFAM: protein of unknown function DUF980; KEGG: sbc:SbBS512_E0993 Mlc titration factor MtfA; hypothetical protein 1834404 12705273 EcDH1_1676 Escherichia coli DH1 hypothetical protein YP_006091627.1 1833607 R 536056 CDS YP_006091628.1 386595228 12705275 complement(1835157..1835687) 1 NC_017625.1 PFAM: cytochrome B561; KEGG: sbo:SBO_1032 putative cytochrome; cytochrome B561 1835687 12705275 EcDH1_1677 Escherichia coli DH1 cytochrome B561 YP_006091628.1 1835157 R 536056 CDS YP_006091629.1 386595229 12705276 complement(1836030..1836680) 1 NC_017625.1 PFAM: YodA domain protein; KEGG: sbc:SbBS512_E0910 metal-binding protein; Ribulose-phosphate 3-epimerase 1836680 12705276 EcDH1_1678 Escherichia coli DH1 Ribulose-phosphate 3-epimerase YP_006091629.1 1836030 R 536056 CDS YP_006091630.1 386595230 12705277 complement(1836937..1837572) 1 NC_017625.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: sdy:SDY_1034 putative sulfite oxidase subunit YedZ; ferric reductase transmembrane domain-containing protein 1837572 12705277 EcDH1_1679 Escherichia coli DH1 ferric reductase transmembrane domain-containing protein YP_006091630.1 1836937 R 536056 CDS YP_006091631.1 386595231 12705278 complement(1837573..1838577) 1 NC_017625.1 PFAM: oxidoreductase molybdopterin binding; KEGG: sbc:SbBS512_E0912 oxidoreductase, molybdopterin binding; oxidoreductase molybdopterin binding protein 1838577 12705278 EcDH1_1680 Escherichia coli DH1 oxidoreductase molybdopterin binding protein YP_006091631.1 1837573 R 536056 CDS YP_006091632.1 386595232 12705279 complement(1838686..1839099) 1 NC_017625.1 TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: sfv:SFV_2015 hypothetical protein; hydroxyisourate hydrolase 1839099 12705279 EcDH1_1681 Escherichia coli DH1 hydroxyisourate hydrolase YP_006091632.1 1838686 R 536056 CDS YP_006091633.1 386595233 12705280 1839121..1839903 1 NC_017625.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbc:SbBS512_E0914 heavy metal response regulator; two component heavy metal response transcriptional regulator, winged helix family 1839903 12705280 EcDH1_1682 Escherichia coli DH1 two component heavy metal response transcriptional regulator, winged helix family YP_006091633.1 1839121 D 536056 CDS YP_006091634.1 386595234 12705281 1839903..1841261 1 NC_017625.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ssn:SSON_2026 putative 2-component sensor protein; heavy metal sensor signal transduction histidine kinase 1841261 12705281 EcDH1_1683 Escherichia coli DH1 heavy metal sensor signal transduction histidine kinase YP_006091634.1 1839903 D 536056 CDS YP_006091635.1 386595235 12705282 complement(1841369..1842220) 1 NC_017625.1 PFAM: ThiJ/PfpI domain protein; KEGG: sbc:SbBS512_E0916 chaperone protein HchA; ThiJ/PfpI domain-containing protein 1842220 12705282 EcDH1_1684 Escherichia coli DH1 ThiJ/PfpI domain-containing protein YP_006091635.1 1841369 R 536056 CDS YP_006091636.1 386595236 12705284 1844553..1844936 1 NC_017625.1 KEGG: sbo:SBO_1045 hypothetical protein; hypothetical protein 1844936 12705284 EcDH1_1686 Escherichia coli DH1 hypothetical protein YP_006091636.1 1844553 D 536056 CDS YP_006091637.1 386595237 12705285 1844976..1845671 1 NC_017625.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sbc:SbBS512_E0922 putative metal-dependent phosphohydrolase; metal dependent phosphohydrolase 1845671 12705285 EcDH1_1687 Escherichia coli DH1 metal dependent phosphohydrolase YP_006091637.1 1844976 D 536056 CDS YP_006091638.1 386595238 12705286 1845738..1847156 1 NC_017625.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sbc:SbBS512_E0923 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 1847156 12705286 EcDH1_1688 Escherichia coli DH1 DNA-cytosine methyltransferase YP_006091638.1 1845738 D 536056 CDS YP_006091639.1 386595239 12705287 1847137..1847607 1 NC_017625.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: sbc:SbBS512_E0925 very short patch repair protein; DNA mismatch endonuclease Vsr 1847607 12705287 EcDH1_1689 Escherichia coli DH1 DNA mismatch endonuclease Vsr YP_006091639.1 1847137 D 536056 CDS YP_006091640.1 386595240 12705288 complement(1847596..1848516) 1 NC_017625.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbc:SbBS512_E0924 carboxylate/amino acid/amine transporter; carboxylate/amino acid/amine transporter 1848516 12705288 EcDH1_1690 Escherichia coli DH1 carboxylate/amino acid/amine transporter YP_006091640.1 1847596 R 536056 CDS YP_006091641.1 386595241 12705289 1848689..1849606 1 NC_017625.1 PFAM: protein of unknown function DUF808; KEGG: sdy:SDY_1048 hypothetical protein; hypothetical protein 1849606 12705289 EcDH1_1691 Escherichia coli DH1 hypothetical protein YP_006091641.1 1848689 D 536056 CDS YP_006091642.1 386595242 12705290 1849685..1849867 1 NC_017625.1 KEGG: sdy:SDY_1049 hypothetical protein; hypothetical protein 1849867 12705290 EcDH1_1692 Escherichia coli DH1 hypothetical protein YP_006091642.1 1849685 D 536056 CDS YP_006091643.1 386595243 12705291 1850038..1851732 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_2013 hypothetical protein; diguanylate cyclase 1851732 12705291 EcDH1_1693 Escherichia coli DH1 diguanylate cyclase YP_006091643.1 1850038 D 536056 CDS YP_006091644.1 386595244 12705292 complement(1851729..1852544) 1 NC_017625.1 KEGG: sdy:SDY_1051 mannosyl-3-phosphoglycerate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; mannosyl-3-phosphoglycerate phosphatase family; mannosyl-3-phosphoglycerate phosphatase family protein; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; mannosyl-3-phosphoglycerate phosphatase family protein 1852544 12705292 EcDH1_1694 Escherichia coli DH1 mannosyl-3-phosphoglycerate phosphatase family protein YP_006091644.1 1851729 R 536056 CDS YP_006091645.1 386595245 12705293 complement(1852842..1853069) 1 NC_017625.1 KEGG: sdy:SDY_1052 hypothetical protein; hypothetical protein 1853069 12705293 EcDH1_1695 Escherichia coli DH1 hypothetical protein YP_006091645.1 1852842 R 536056 CDS YP_006091646.1 386595246 12705294 1853232..1853420 1 NC_017625.1 KEGG: sdy:SDY_1053 hypothetical protein; hypothetical protein 1853420 12705294 EcDH1_1696 Escherichia coli DH1 hypothetical protein YP_006091646.1 1853232 D 536056 CDS YP_006091647.1 386595247 12705295 complement(1853464..1854087) 1 NC_017625.1 PFAM: regulatory protein LuxR; KEGG: sfv:SFV_1994 positive regulator for ctr capsule biosynthesis, positive transcription factor; LuxR family transcriptional regulator 1854087 12705295 EcDH1_1697 Escherichia coli DH1 LuxR family transcriptional regulator YP_006091647.1 1853464 R 536056 CDS YP_006091648.1 386595248 12705296 complement(1854377..1855162) 1 NC_017625.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: ssn:SSON_2008 flagellar biosynthesis protein FliR; flagellar biosynthetic protein FliR 1855162 12705296 EcDH1_1698 Escherichia coli DH1 flagellar biosynthetic protein FliR YP_006091648.1 1854377 R 536056 CDS YP_006091649.1 386595249 12705297 complement(1855170..1855439) 1 NC_017625.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: sbo:SBO_1058 flagellar biosynthesis protein FliQ; flagellar biosynthetic protein FliQ 1855439 12705297 EcDH1_1699 Escherichia coli DH1 flagellar biosynthetic protein FliQ YP_006091649.1 1855170 R 536056 CDS YP_006091650.1 386595250 12705298 complement(1855449..1856186) 1 NC_017625.1 KEGG: sbc:SbBS512_E1069 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 1856186 12705298 EcDH1_1700 Escherichia coli DH1 flagellar biosynthetic protein FliP YP_006091650.1 1855449 R 536056 CDS YP_006091651.1 386595251 12705299 complement(1856186..1856551) 1 NC_017625.1 PFAM: flagellar biosynthesis protein FliO; KEGG: ssn:SSON_2005 flagellar biosynthesis protein FliO; flagellar biosynthesis protein FliO 1856551 12705299 EcDH1_1701 Escherichia coli DH1 flagellar biosynthesis protein FliO YP_006091651.1 1856186 R 536056 CDS YP_006091652.1 386595252 12705300 complement(1856554..1856967) 1 NC_017625.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: sbc:SbBS512_E1067 flagellar motor switch protein FliN; flagellar motor switch protein FliN 1856967 12705300 EcDH1_1702 Escherichia coli DH1 flagellar motor switch protein FliN YP_006091652.1 1856554 R 536056 CDS YP_006091653.1 386595253 12705301 complement(1856964..1857968) 1 NC_017625.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sbo:SBO_1062 flagellar motor switch protein FliM; flagellar motor switch protein FliM 1857968 12705301 EcDH1_1703 Escherichia coli DH1 flagellar motor switch protein FliM YP_006091653.1 1856964 R 536056 CDS YP_006091654.1 386595254 12705302 complement(1857973..1858437) 1 NC_017625.1 PFAM: flagellar basal body-associated protein FliL; KEGG: sfv:SFV_1987 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 1858437 12705302 EcDH1_1704 Escherichia coli DH1 flagellar basal body-associated protein FliL YP_006091654.1 1857973 R 536056 CDS YP_006091655.1 386595255 12705303 complement(1858542..1859669) 1 NC_017625.1 PFAM: flagellar hook-length control protein; KEGG: sfv:SFV_1986 flagellar hook-length control protein; flagellar hook-length control protein 1859669 12705303 EcDH1_1705 Escherichia coli DH1 flagellar hook-length control protein YP_006091655.1 1858542 R 536056 CDS YP_006091656.1 386595256 12705304 complement(1859666..1860109) 1 NC_017625.1 TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: ssn:SSON_2000 flagellar biosynthesis chaperone; flagellar export protein FliJ 1860109 12705304 EcDH1_1706 Escherichia coli DH1 flagellar export protein FliJ YP_006091656.1 1859666 R 536056 CDS YP_006091657.1 386595257 12705305 complement(1860128..1861501) 1 NC_017625.1 KEGG: ssn:SSON_1999 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; FliI/YscN family ATPase 1861501 12705305 EcDH1_1707 Escherichia coli DH1 FliI/YscN family ATPase YP_006091657.1 1860128 R 536056 CDS YP_006091658.1 386595258 12705306 complement(1861501..1862187) 1 NC_017625.1 PFAM: flagellar assembly protein FliH; KEGG: ssn:SSON_1998 flagellar assembly protein H; flagellar assembly protein FliH 1862187 12705306 EcDH1_1708 Escherichia coli DH1 flagellar assembly protein FliH YP_006091658.1 1861501 R 536056 CDS YP_006091659.1 386595259 12705307 complement(1862180..1863175) 1 NC_017625.1 PFAM: flagellar motor switch protein FliG; KEGG: ssn:SSON_1997 flagellar motor switch protein G; flagellar motor switch protein FliG 1863175 12705307 EcDH1_1709 Escherichia coli DH1 flagellar motor switch protein FliG YP_006091659.1 1862180 R 536056 CDS YP_006091660.1 386595260 12705308 complement(1863168..1864826) 1 NC_017625.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: ssn:SSON_1996 flagellar MS-ring protein; flagellar M-ring protein FliF 1864826 12705308 EcDH1_1710 Escherichia coli DH1 flagellar M-ring protein FliF YP_006091660.1 1863168 R 536056 CDS YP_006091661.1 386595261 12705309 1865041..1865355 1 NC_017625.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: ssn:SSON_1995 flagellar hook-basal body protein FliE; flagellar hook-basal body complex subunit FliE 1865355 12705309 EcDH1_1711 Escherichia coli DH1 flagellar hook-basal body complex subunit FliE YP_006091661.1 1865041 D 536056 CDS YP_006091662.1 386595262 12705312 complement(1866976..1867455) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cko:CKO_01238 hypothetical protein; N-acetyltransferase GCN5 1867455 12705312 EcDH1_1714 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006091662.1 1866976 R 536056 CDS YP_006091663.1 386595263 12705313 complement(1867566..1868234) 1 NC_017625.1 PFAM: protein of unknown function DUF159; KEGG: ssn:SSON_1987 hypothetical protein; hypothetical protein 1868234 12705313 EcDH1_1715 Escherichia coli DH1 hypothetical protein YP_006091663.1 1867566 R 536056 CDS YP_006091664.1 386595264 12705314 complement(1868343..1868576) 1 NC_017625.1 PFAM: SirA family protein; KEGG: cko:CKO_01008 hypothetical protein; SirA family protein 1868576 12705314 EcDH1_1716 Escherichia coli DH1 SirA family protein YP_006091664.1 1868343 R 536056 CDS YP_006091665.1 386595265 12705315 complement(1868573..1869778) 1 NC_017625.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sbo:SBO_1077 predicted inner membrane protein; hypothetical protein 1869778 12705315 EcDH1_1717 Escherichia coli DH1 hypothetical protein YP_006091665.1 1868573 R 536056 CDS YP_006091666.1 386595266 12705316 1869965..1870378 1 NC_017625.1 KEGG: sdy:SDY_1087 hypothetical protein; hypothetical protein 1870378 12705316 EcDH1_1718 Escherichia coli DH1 hypothetical protein YP_006091666.1 1869965 D 536056 CDS YP_006091667.1 386595267 12705317 complement(1870412..1871899) 1 NC_017625.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ssn:SSON_1983 cytoplasmic alpha-amylase; alpha amylase 1871899 12705317 EcDH1_1719 Escherichia coli DH1 alpha amylase YP_006091667.1 1870412 R 536056 CDS YP_006091668.1 386595268 12705318 complement(1871977..1872342) 1 NC_017625.1 PFAM: flagellar export chaperone; KEGG: ssn:SSON_1982 flagellar biosynthesis protein FliT; flagellar export chaperone 1872342 12705318 EcDH1_1720 Escherichia coli DH1 flagellar export chaperone YP_006091668.1 1871977 R 536056 CDS YP_006091669.1 386595269 12705319 complement(1872342..1872752) 1 NC_017625.1 PFAM: flagellar protein FliS; KEGG: sbc:SbBS512_E1055 flagellar protein FliS; flagellar protein FliS 1872752 12705319 EcDH1_1721 Escherichia coli DH1 flagellar protein FliS YP_006091669.1 1872342 R 536056 CDS YP_006091670.1 386595270 12705320 complement(1872777..1874183) 1 NC_017625.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: sbo:SBO_1082 flagellar capping protein; flagellar hook-associated 2 domain-containing protein 1874183 12705320 EcDH1_1722 Escherichia coli DH1 flagellar hook-associated 2 domain-containing protein YP_006091670.1 1872777 R 536056 CDS YP_006091671.1 386595271 12705321 1874449..1875945 1 NC_017625.1 PFAM: flagellin domain protein; Flagellin D3 domain protein; KEGG: spq:SPAB_01193 flagellin; flagellin domain-containing protein 1875945 12705321 EcDH1_1723 Escherichia coli DH1 flagellin domain-containing protein YP_006091671.1 1874449 D 536056 CDS YP_006091672.1 386595272 12705322 1876266..1876985 1 NC_017625.1 KEGG: ssn:SSON_1194 flagellar biosynthesis sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG 1876985 12705322 EcDH1_1724 Escherichia coli DH1 RNA polymerase sigma 28 subunit FliA/WhiG YP_006091672.1 1876266 D 536056 CDS YP_006091673.1 386595273 12705323 1877031..1877582 1 NC_017625.1 PFAM: integrase domain protein SAM domain protein; KEGG: sdy:SDY_1096 protein FliZ; integrase domain-containing protein SAM domain-containing protein 1877582 12705323 EcDH1_1725 Escherichia coli DH1 integrase domain-containing protein SAM domain-containing protein YP_006091673.1 1877031 D 536056 CDS YP_006091674.1 386595274 12705324 1877613..1878470 1 NC_017625.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: sfl:SF1963 cystine transporter subunit; family 3 extracellular solute-binding protein 1878470 12705324 EcDH1_1726 Escherichia coli DH1 family 3 extracellular solute-binding protein YP_006091674.1 1877613 D 536056 CDS YP_006091675.1 386595275 12705325 1878575..1879561 1 NC_017625.1 KEGG: sfv:SFV_1963 D-cysteine desulfhydrase; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 1879561 12705325 EcDH1_1727 Escherichia coli DH1 pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family YP_006091675.1 1878575 D 536056 CDS YP_006091676.1 386595276 12705326 1879576..1880244 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1200 putative transport system permease protein (former YecC); polar amino acid ABC transporter inner membrane subunit 1880244 12705326 EcDH1_1728 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006091676.1 1879576 D 536056 CDS YP_006091677.1 386595277 12705327 1880241..1880993 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_1201 putative amino-acid ABC transporter ATP-binding protein YecC; ABC transporter 1880993 12705327 EcDH1_1729 Escherichia coli DH1 ABC transporter YP_006091677.1 1880241 D 536056 CDS YP_006091678.1 386595278 12705328 1881223..1881945 1 NC_017625.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: sbc:SbBS512_E1044 regulatory protein SdiA; LuxR family transcriptional regulator 1881945 12705328 EcDH1_1730 Escherichia coli DH1 LuxR family transcriptional regulator YP_006091678.1 1881223 D 536056 CDS YP_006091679.1 386595279 12705329 complement(1882013..1882237) 1 NC_017625.1 KEGG: sdy:SDY_1103 hypothetical protein; hypothetical protein 1882237 12705329 EcDH1_1731 Escherichia coli DH1 hypothetical protein YP_006091679.1 1882013 R 536056 CDS YP_006091680.1 386595280 12705330 1882696..1883352 1 NC_017625.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sbc:SbBS512_E1041 response regulator UvrY; LuxR family two component transcriptional regulator 1883352 12705330 EcDH1_1732 Escherichia coli DH1 LuxR family two component transcriptional regulator YP_006091680.1 1882696 D 536056 CDS YP_006091681.1 386595281 12705331 1883349..1885181 1 NC_017625.1 KEGG: ssn:SSON_1205 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C 1885181 12705331 EcDH1_1733 Escherichia coli DH1 excinuclease ABC subunit C YP_006091681.1 1883349 D 536056 CDS YP_006091682.1 386595282 12705332 1885238..1885786 1 NC_017625.1 KEGG: sdy:SDY_1106 phosphatidylglycerophosphate synthetase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1885786 12705332 EcDH1_1734 Escherichia coli DH1 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_006091682.1 1885238 D 536056 CDS YP_006091683.1 386595283 12705336 1886436..1887101 1 NC_017625.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: sbo:SBO_1098 hypothetical protein; yecA family protein 1887101 12705336 EcDH1_1735 Escherichia coli DH1 yecA family protein YP_006091683.1 1886436 D 536056 CDS YP_006091684.1 386595284 12705337 complement(1887163..1888374) 1 NC_017625.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sfv:SFV_1951 tyrosine transporter; aromatic amino acid transporter 1888374 12705337 EcDH1_1736 Escherichia coli DH1 aromatic amino acid transporter YP_006091684.1 1887163 R 536056 CDS YP_006091685.1 386595285 12705338 1888565..1888804 1 NC_017625.1 KEGG: sbc:SbBS512_E1032 hypothetical protein; hypothetical protein 1888804 12705338 EcDH1_1737 Escherichia coli DH1 hypothetical protein YP_006091685.1 1888565 D 536056 CDS YP_006091686.1 386595286 12705339 complement(1888842..1889339) 1 NC_017625.1 PFAM: Ferritin Dps family protein; KEGG: sdy:SDY_1113 ferritin; ferroxidase 1889339 12705339 EcDH1_1738 Escherichia coli DH1 ferroxidase YP_006091686.1 1888842 R 536056 CDS YP_006091687.1 386595287 12705340 complement(1889510..1889833) 1 NC_017625.1 KEGG: ssn:SSON_1214 hypothetical protein; hypothetical protein 1889833 12705340 EcDH1_1739 Escherichia coli DH1 hypothetical protein YP_006091687.1 1889510 R 536056 CDS YP_006091688.1 386595288 12705341 1890297..1890548 1 NC_017625.1 KEGG: sdy:SDY_1117 hypothetical protein; hypothetical protein 1890548 12705341 EcDH1_1740 Escherichia coli DH1 hypothetical protein YP_006091688.1 1890297 D 536056 CDS YP_006091689.1 386595289 12705342 complement(1890627..1891130) 1 NC_017625.1 PFAM: Ferritin Dps family protein; KEGG: sdy:SDY_1116 ferritin-like protein; ferritin Dps family protein 1891130 12705342 EcDH1_1741 Escherichia coli DH1 ferritin Dps family protein YP_006091689.1 1890627 R 536056 CDS YP_006091690.1 386595290 12705343 1891927..1892916 1 NC_017625.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_1217 L-arabinose-binding periplasmic protein; monosaccharide-transporting ATPase 1892916 12705343 EcDH1_1742 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006091690.1 1891927 D 536056 CDS YP_006091691.1 386595291 12705344 1892986..1894500 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_1121 L-arabinose transporter ATP-binding protein; ABC transporter 1894500 12705344 EcDH1_1743 Escherichia coli DH1 ABC transporter YP_006091691.1 1892986 D 536056 CDS YP_006091692.1 386595292 12705345 1894515..1895501 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: sfv:SFV_1942 L-arabinose transporter permease protein; monosaccharide-transporting ATPase 1895501 12705345 EcDH1_1744 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006091692.1 1894515 D 536056 CDS YP_006091693.1 386595293 12705346 1895668..1896468 1 NC_017625.1 KEGG: ssn:SSON_1220 trehalose-6-phosphate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD-superfamily hydrolase 1896468 12705346 EcDH1_1745 Escherichia coli DH1 HAD-superfamily hydrolase YP_006091693.1 1895668 D 536056 CDS YP_006091694.1 386595294 12705347 1896443..1897867 1 NC_017625.1 KEGG: sdy:SDY_1193 trehalose-6-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase (UDP-forming) 1897867 12705347 EcDH1_1746 Escherichia coli DH1 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_006091694.1 1896443 D 536056 CDS YP_006091695.1 386595295 12705348 complement(1897874..1898302) 1 NC_017625.1 PFAM: UspA domain protein; KEGG: sbo:SBO_1113 universal stress protein UspC; UspA domain-containing protein 1898302 12705348 EcDH1_1747 Escherichia coli DH1 UspA domain-containing protein YP_006091695.1 1897874 R 536056 CDS YP_006091696.1 386595296 12705349 1899082..1899432 1 NC_017625.1 PFAM: flagellar transcriptional activator; KEGG: sdy:SDY_1191 transcriptional activator FlhD; flagellar transcriptional activator 1899432 12705349 EcDH1_1748 Escherichia coli DH1 flagellar transcriptional activator YP_006091696.1 1899082 D 536056 CDS YP_006091697.1 386595297 12705350 1899435..1900013 1 NC_017625.1 PFAM: flagellar transcriptional activator FlhC; KEGG: ssn:SSON_1226 transcriptional activator FlhC; flagellar transcriptional activator FlhC 1900013 12705350 EcDH1_1749 Escherichia coli DH1 flagellar transcriptional activator FlhC YP_006091697.1 1899435 D 536056 CDS YP_006091698.1 386595298 12705351 1900140..1901027 1 NC_017625.1 KEGG: ssn:SSON_1227 flagellar motor protein MotA; flagellar motor protein MotA 1901027 12705351 EcDH1_1750 Escherichia coli DH1 flagellar motor protein MotA YP_006091698.1 1900140 D 536056 CDS YP_006091699.1 386595299 12705352 1901024..1901950 1 NC_017625.1 PFAM: OmpA/MotB domain protein; KEGG: ssn:SSON_1228 flagellar motor protein MotB; OmpA/MotB domain-containing protein 1901950 12705352 EcDH1_1751 Escherichia coli DH1 OmpA/MotB domain-containing protein YP_006091699.1 1901024 D 536056 CDS YP_006091700.1 386595300 12705353 1901955..1903919 1 NC_017625.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheY binding; KEGG: ssn:SSON_1229 chemotaxis protein CheA; CheA signal transduction histidine kinase 1903919 12705353 EcDH1_1752 Escherichia coli DH1 CheA signal transduction histidine kinase YP_006091700.1 1901955 D 536056 CDS YP_006091701.1 386595301 12705354 1903940..1904443 1 NC_017625.1 PFAM: CheW domain protein; KEGG: ssn:SSON_1230 purine-binding chemotaxis protein; CheW protein 1904443 12705354 EcDH1_1753 Escherichia coli DH1 CheW protein YP_006091701.1 1903940 D 536056 CDS YP_006091702.1 386595302 12705355 1904588..1906249 1 NC_017625.1 PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ssn:SSON_1231 methyl-accepting chemotaxis protein II; methyl-accepting chemotaxis sensory transducer 1906249 12705355 EcDH1_1754 Escherichia coli DH1 methyl-accepting chemotaxis sensory transducer YP_006091702.1 1904588 D 536056 CDS YP_006091703.1 386595303 12705356 1906295..1907896 1 NC_017625.1 PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ssn:SSON_1232 methyl-accepting protein IV; methyl-accepting chemotaxis sensory transducer 1907896 12705356 EcDH1_1755 Escherichia coli DH1 methyl-accepting chemotaxis sensory transducer YP_006091703.1 1906295 D 536056 CDS YP_006091704.1 386595304 12705357 1907915..1908775 1 NC_017625.1 PFAM: MCP methyltransferase CheR-type; KEGG: sbc:SbBS512_E2177 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR 1908775 12705357 EcDH1_1756 Escherichia coli DH1 chemotaxis protein CheR YP_006091704.1 1907915 D 536056 CDS YP_006091705.1 386595305 12705358 1908778..1909827 1 NC_017625.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: ssn:SSON_1234 chemotaxis-specific methylesterase; response regulator receiver modulated CheB methylesterase 1909827 12705358 EcDH1_1757 Escherichia coli DH1 response regulator receiver modulated CheB methylesterase YP_006091705.1 1908778 D 536056 CDS YP_006091706.1 386595306 12705359 1909842..1910231 1 NC_017625.1 PFAM: response regulator receiver; KEGG: ssn:SSON_1235 chemotaxis regulator transmitting signal to flagellar motor component; response regulator receiver protein 1910231 12705359 EcDH1_1758 Escherichia coli DH1 response regulator receiver protein YP_006091706.1 1909842 D 536056 CDS YP_006091707.1 386595307 12705360 1910242..1910886 1 NC_017625.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: sbo:SBO_1119 chemotaxis regulator CheZ; chemotaxis phosphatase, CheZ 1910886 12705360 EcDH1_1759 Escherichia coli DH1 chemotaxis phosphatase, CheZ YP_006091707.1 1910242 D 536056 CDS YP_006091708.1 386595308 12705361 1911088..1912236 1 NC_017625.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sfv:SFV_1921 flagellar biosynthesis protein FlhB; flagellar biosynthetic protein FlhB 1912236 12705361 EcDH1_1760 Escherichia coli DH1 flagellar biosynthetic protein FlhB YP_006091708.1 1911088 D 536056 CDS YP_006091709.1 386595309 12705362 1912229..1914307 1 NC_017625.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: sbo:SBO_1121 flagellar biosynthesis protein A; flagellar biosynthesis protein FlhA 1914307 12705362 EcDH1_1761 Escherichia coli DH1 flagellar biosynthesis protein FlhA YP_006091709.1 1912229 D 536056 CDS YP_006091710.1 386595310 12705363 1914307..1914699 1 NC_017625.1 PFAM: flagellar FlhE family protein; KEGG: sbc:SbBS512_E2171 flagellar protein FlhE; flagellar FlhE family protein 1914699 12705363 EcDH1_1762 Escherichia coli DH1 flagellar FlhE family protein YP_006091710.1 1914307 D 536056 CDS YP_006091711.1 386595311 12705364 complement(1914819..1915307) 1 NC_017625.1 PFAM: protein of unknown function DUF1311; KEGG: sbo:SBO_1123 hypothetical protein; hypothetical protein 1915307 12705364 EcDH1_1763 Escherichia coli DH1 hypothetical protein YP_006091711.1 1914819 R 536056 CDS YP_006091712.1 386595312 12705365 complement(1915484..1917217) 1 NC_017625.1 KEGG: sbc:SbBS512_E2169 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 1917217 12705365 EcDH1_1764 Escherichia coli DH1 arginyl-tRNA synthetase YP_006091712.1 1915484 R 536056 CDS YP_006091713.1 386595313 12705366 1917433..1917999 1 NC_017625.1 PFAM: protein of unknown function DUF991; KEGG: sdy:SDY_1179 hypothetical protein; hypothetical protein 1917999 12705366 EcDH1_1765 Escherichia coli DH1 hypothetical protein YP_006091713.1 1917433 D 536056 CDS YP_006091714.1 386595314 12705367 1918013..1918759 1 NC_017625.1 PFAM: CutC family protein; KEGG: ssn:SSON_1244 copper homeostasis protein CutC; CutC family protein 1918759 12705367 EcDH1_1766 Escherichia coli DH1 CutC family protein YP_006091714.1 1918013 D 536056 CDS YP_006091715.1 386595315 12705368 1919147..1920247 1 NC_017625.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: sfv:SFV_1911 putative cytochrome c-type protein; NapC/NirT cytochrome c domain protein 1920247 12705368 EcDH1_1767 Escherichia coli DH1 NapC/NirT cytochrome c domain protein YP_006091715.1 1919147 D 536056 CDS YP_006091716.1 386595316 12705369 1920272..1922701 1 NC_017625.1 TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfx:S2003 biotin sulfoxide reductase 2; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 1922701 12705369 EcDH1_1768 Escherichia coli DH1 molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_006091716.1 1920272 D 536056 CDS YP_006091717.1 386595317 12705370 complement(1922866..1923837) 1 NC_017625.1 TIGRFAM: methyltransferase; PFAM: methyltransferase putative; KEGG: sdy:SDY_1170 putative enzyme; methyltransferase 1923837 12705370 EcDH1_1769 Escherichia coli DH1 methyltransferase YP_006091717.1 1922866 R 536056 CDS YP_006091718.1 386595318 12705371 complement(1923834..1924577) 1 NC_017625.1 TIGRFAM: methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_1169 hypothetical protein; methyltransferase 1924577 12705371 EcDH1_1770 Escherichia coli DH1 methyltransferase YP_006091718.1 1923834 R 536056 CDS YP_006091719.1 386595319 12705372 complement(1924618..1925013) 1 NC_017625.1 KEGG: sdy:SDY_1168 hypothetical protein; hypothetical protein 1925013 12705372 EcDH1_1771 Escherichia coli DH1 hypothetical protein YP_006091719.1 1924618 R 536056 CDS YP_006091720.1 386595320 12705373 complement(1925066..1925884) 1 NC_017625.1 PFAM: protein of unknown function DUF72; KEGG: ent:Ent638_2436 hypothetical protein; hypothetical protein 1925884 12705373 EcDH1_1772 Escherichia coli DH1 hypothetical protein YP_006091720.1 1925066 R 536056 CDS YP_006091721.1 386595321 12705374 complement(1925881..1926447) 1 NC_017625.1 PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_1274 hypothetical protein; isochorismatase hydrolase 1926447 12705374 EcDH1_1773 Escherichia coli DH1 isochorismatase hydrolase YP_006091721.1 1925881 R 536056 CDS YP_006091722.1 386595322 12705375 1926757..1928529 1 NC_017625.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sbc:SbBS512_E1106 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 1928529 12705375 EcDH1_1774 Escherichia coli DH1 aspartyl-tRNA synthetase YP_006091722.1 1926757 D 536056 CDS YP_006091723.1 386595323 12705376 1928590..1929099 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sfv:SFV_1867 dATP pyrophosphohydrolase; NUDIX hydrolase 1929099 12705376 EcDH1_1775 Escherichia coli DH1 NUDIX hydrolase YP_006091723.1 1928590 D 536056 CDS YP_006091724.1 386595324 12705377 1929128..1929868 1 NC_017625.1 PFAM: protein of unknown function DUF28; KEGG: ssn:SSON_1277 hypothetical protein; hypothetical protein 1929868 12705377 EcDH1_1776 Escherichia coli DH1 hypothetical protein YP_006091724.1 1929128 D 536056 CDS YP_006091725.1 386595325 12705378 1929903..1930424 1 NC_017625.1 KEGG: sdy:SDY_1150 Holliday junction resolvase; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 1930424 12705378 EcDH1_1777 Escherichia coli DH1 crossover junction endodeoxyribonuclease RuvC YP_006091725.1 1929903 D 536056 CDS YP_006091726.1 386595326 12705379 complement(1930426..1931028) 1 NC_017625.1 PFAM: protein of unknown function DUF1105; KEGG: ssn:SSON_1279 hypothetical protein; hypothetical protein 1931028 12705379 EcDH1_1778 Escherichia coli DH1 hypothetical protein YP_006091726.1 1930426 R 536056 CDS YP_006091727.1 386595327 12705380 1931303..1931914 1 NC_017625.1 KEGG: sbc:SbBS512_E0957 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA 1931914 12705380 EcDH1_1779 Escherichia coli DH1 Holliday junction DNA helicase RuvA YP_006091727.1 1931303 D 536056 CDS YP_006091728.1 386595328 12705381 1931923..1932933 1 NC_017625.1 KEGG: sdy:SDY_1147 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 1932933 12705381 EcDH1_1780 Escherichia coli DH1 Holliday junction DNA helicase RuvB YP_006091728.1 1931923 D 536056 CDS YP_006091729.1 386595329 12705382 complement(1933080..1933865) 1 NC_017625.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: ssn:SSON_1282 high-affinity zinc transporter membrane component; ABC-3 protein 1933865 12705382 EcDH1_1781 Escherichia coli DH1 ABC-3 protein YP_006091729.1 1933080 R 536056 CDS YP_006091730.1 386595330 12705383 complement(1933862..1934617) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_1175 high-affinity zinc transporter ATPase; ABC transporter 1934617 12705383 EcDH1_1782 Escherichia coli DH1 ABC transporter YP_006091730.1 1933862 R 536056 CDS YP_006091731.1 386595331 12705384 1934642..1935628 1 NC_017625.1 PFAM: periplasmic solute binding protein; KEGG: sfv:SFV_1860 high-affinity zinc transporter periplasmic component; periplasmic solute binding protein 1935628 12705384 EcDH1_1783 Escherichia coli DH1 periplasmic solute binding protein YP_006091731.1 1934642 D 536056 CDS YP_006091732.1 386595332 12705385 1935644..1936966 1 NC_017625.1 PFAM: Peptidoglycan-binding LysM; Opacity-associated protein A; Opacity-associated protein A domain protein; Peptidase M23; KEGG: sbc:SbBS512_E0952 metalloprotease, opacity-associated protein A family; peptidase M23 1936966 12705385 EcDH1_1784 Escherichia coli DH1 peptidase M23 YP_006091732.1 1935644 D 536056 CDS YP_006091733.1 386595333 12705386 1937086..1938057 1 NC_017625.1 TIGRFAM: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: ssn:SSON_1286 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1938057 12705386 EcDH1_1785 Escherichia coli DH1 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_006091733.1 1937086 D 536056 CDS YP_006091734.1 386595334 12705387 complement(1938188..1939630) 1 NC_017625.1 KEGG: sbc:SbBS512_E2130 pyruvate kinase II; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 1939630 12705387 EcDH1_1786 Escherichia coli DH1 pyruvate kinase YP_006091734.1 1938188 R 536056 CDS YP_006091735.1 386595335 12705388 complement(1939758..1940627) 1 NC_017625.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbo:SBO_1161 DNA-binding transcriptional regulator HexR; RpiR family transcriptional regulator 1940627 12705388 EcDH1_1787 Escherichia coli DH1 RpiR family transcriptional regulator YP_006091735.1 1939758 R 536056 CDS YP_006091736.1 386595336 12705389 1940650..1940799 1 NC_017625.1 KEGG: sbc:SbBS512_E2128 hypothetical protein; hypothetical protein 1940799 12705389 EcDH1_1788 Escherichia coli DH1 hypothetical protein YP_006091736.1 1940650 D 536056 CDS YP_006091737.1 386595337 12705390 1940965..1942440 1 NC_017625.1 KEGG: sdy:SDY_1138 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1942440 12705390 EcDH1_1789 Escherichia coli DH1 glucose-6-phosphate 1-dehydrogenase YP_006091737.1 1940965 D 536056 CDS YP_006091738.1 386595338 12705391 1942675..1944486 1 NC_017625.1 KEGG: sfv:SFV_1853 phosphogluconate dehydratase; TIGRFAM: 6-phosphogluconate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; 6-phosphogluconate dehydratase 1944486 12705391 EcDH1_1790 Escherichia coli DH1 6-phosphogluconate dehydratase YP_006091738.1 1942675 D 536056 CDS YP_006091739.1 386595339 12705392 1944523..1945164 1 NC_017625.1 KEGG: sbc:SbBS512_E2125 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 1945164 12705392 EcDH1_1791 Escherichia coli DH1 2-dehydro-3-deoxyphosphogluconate aldolase YP_006091739.1 1944523 D 536056 CDS YP_006091740.1 386595340 12705393 complement(1945220..1946398) 1 NC_017625.1 KEGG: ssn:SSON_1299 phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide formyltransferase 2 1946398 12705393 EcDH1_1792 Escherichia coli DH1 phosphoribosylglycinamide formyltransferase 2 YP_006091740.1 1945220 R 536056 CDS YP_006091741.1 386595341 12705394 1946532..1946822 1 NC_017625.1 PFAM: YebG family protein; KEGG: sdy:SDY_1134 DNA damage-inducible protein YebG; hypothetical protein 1946822 12705394 EcDH1_1793 Escherichia coli DH1 hypothetical protein YP_006091741.1 1946532 D 536056 CDS YP_006091742.1 386595342 12705395 1946889..1947245 1 NC_017625.1 KEGG: sbc:SbBS512_E2122 putative lipoprotein; putative lipoprotein 1947245 12705395 EcDH1_1794 Escherichia coli DH1 putative lipoprotein YP_006091742.1 1946889 D 536056 CDS YP_006091743.1 386595343 12705396 complement(1947402..1947512) 1 NC_017625.1 hypothetical protein 1947512 12705396 EcDH1_1795 Escherichia coli DH1 hypothetical protein YP_006091743.1 1947402 R 536056 CDS YP_006091744.1 386595344 12705397 1947572..1948231 1 NC_017625.1 PFAM: protein of unknown function DUF533; KEGG: ssn:SSON_1302 hypothetical protein; hypothetical protein 1948231 12705397 EcDH1_1796 Escherichia coli DH1 hypothetical protein YP_006091744.1 1947572 D 536056 CDS YP_006091745.1 386595345 12705398 1948440..1950500 1 NC_017625.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: sfv:SFV_1847 protease 2; oligopeptidase B 1950500 12705398 EcDH1_1797 Escherichia coli DH1 oligopeptidase B YP_006091745.1 1948440 D 536056 CDS YP_006091746.1 386595346 12705399 complement(1950497..1951159) 1 NC_017625.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: sdy:SDY_1130 exodeoxyribonuclease X; Exonuclease RNase T and DNA polymerase III 1951159 12705399 EcDH1_1798 Escherichia coli DH1 Exonuclease RNase T and DNA polymerase III YP_006091746.1 1950497 R 536056 CDS YP_006091747.1 386595347 12705400 complement(1951183..1951839) 1 NC_017625.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbc:SbBS512_E2118 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1951839 12705400 EcDH1_1799 Escherichia coli DH1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_006091747.1 1951183 R 536056 CDS YP_006091748.1 386595348 12705401 complement(1951941..1952171) 1 NC_017625.1 PFAM: DNA polymerase II beta subunit; KEGG: sdy:SDY_1128 DNA polymerase III subunit theta; DNA polymerase II subunit beta 1952171 12705401 EcDH1_1800 Escherichia coli DH1 DNA polymerase II subunit beta YP_006091748.1 1951941 R 536056 CDS YP_006091749.1 386595349 12705402 1952310..1952684 1 NC_017625.1 PFAM: copper resistance protein CopC; KEGG: sbc:SbBS512_E2116 copper resistance protein CopC; copper resistance protein CopC 1952684 12705402 EcDH1_1801 Escherichia coli DH1 copper resistance protein CopC YP_006091749.1 1952310 D 536056 CDS YP_006091750.1 386595350 12705403 1952688..1953560 1 NC_017625.1 PFAM: copper resistance D domain protein; KEGG: sbc:SbBS512_E2115 copper resistance protein D; copper resistance D domain-containing protein 1953560 12705403 EcDH1_1802 Escherichia coli DH1 copper resistance D domain-containing protein YP_006091750.1 1952688 D 536056 CDS YP_006091751.1 386595351 12705404 1953573..1953914 1 NC_017625.1 KEGG: sbo:SBO_1143 hypothetical protein; hypothetical protein 1953914 12705404 EcDH1_1803 Escherichia coli DH1 hypothetical protein YP_006091751.1 1953573 D 536056 CDS YP_006091752.1 386595352 12705405 1954310..1954966 1 NC_017625.1 PFAM: metallophosphoesterase; KEGG: sbo:SBO_1253 serine/threonine protein phosphatase 1; bis(5'-nucleosyl)-tetraphosphatase 1954966 12705405 EcDH1_1804 Escherichia coli DH1 bis(5'-nucleosyl)-tetraphosphatase YP_006091752.1 1954310 D 536056 CDS YP_006091753.1 386595353 12705406 complement(1954967..1955242) 1 NC_017625.1 PFAM: protein of unknown function DUF1482; KEGG: sbc:SbBS512_E2105 hypothetical protein; hypothetical protein 1955242 12705406 EcDH1_1805 Escherichia coli DH1 hypothetical protein YP_006091753.1 1954967 R 536056 CDS YP_006091754.1 386595354 12705407 complement(1955263..1955499) 1 NC_017625.1 PFAM: protein of unknown function DUF1480; KEGG: sdy:SDY_1987 hypothetical protein; hypothetical protein 1955499 12705407 EcDH1_1806 Escherichia coli DH1 hypothetical protein YP_006091754.1 1955263 R 536056 CDS YP_006091755.1 386595355 12705408 complement(1955617..1957062) 1 NC_017625.1 TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein; KEGG: ssn:SSON_1326 rRNA (cytosine-C(5)-)-methyltransferase RsmF; RNA methylase 1957062 12705408 EcDH1_1807 Escherichia coli DH1 RNA methylase YP_006091755.1 1955617 R 536056 CDS YP_006091756.1 386595356 12705409 complement(1957136..1959769) 1 NC_017625.1 PFAM: Mammalian cell entry related domain protein; KEGG: ssn:SSON_1327 hypothetical protein; Mammalian cell entry related domain-containing protein 1959769 12705409 EcDH1_1808 Escherichia coli DH1 Mammalian cell entry related domain-containing protein YP_006091756.1 1957136 R 536056 CDS YP_006091757.1 386595357 12705410 complement(1959738..1961021) 1 NC_017625.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: ssn:SSON_1328 hypothetical protein; PqiA family integral membrane protein 1961021 12705410 EcDH1_1809 Escherichia coli DH1 PqiA family integral membrane protein YP_006091757.1 1959738 R 536056 CDS YP_006091758.1 386595358 12705411 1961097..1961648 1 NC_017625.1 PFAM: GAF domain protein; KEGG: sdy:SDY_1980 hypothetical protein; putative GAF sensor protein 1961648 12705411 EcDH1_1810 Escherichia coli DH1 putative GAF sensor protein YP_006091758.1 1961097 D 536056 CDS YP_006091759.1 386595359 12705412 1961745..1962443 1 NC_017625.1 PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: sbo:SBO_1246 putative solute/DNA competence effector; ProQ activator of osmoprotectant transporter ProP 1962443 12705412 EcDH1_1811 Escherichia coli DH1 ProQ activator of osmoprotectant transporter ProP YP_006091759.1 1961745 D 536056 CDS YP_006091760.1 386595360 12705413 1962463..1964511 1 NC_017625.1 KEGG: sbc:SbBS512_E2098 C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1964511 12705413 EcDH1_1812 Escherichia coli DH1 carboxyl-terminal protease YP_006091760.1 1962463 D 536056 CDS YP_006091761.1 386595361 12705414 1964703..1965584 1 NC_017625.1 PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: sdy:SDY_1977 heat shock protein HtpX; HtpX domain protein 1965584 12705414 EcDH1_1813 Escherichia coli DH1 HtpX domain protein YP_006091761.1 1964703 D 536056 CDS YP_006091762.1 386595362 12705415 complement(1965630..1967003) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2096 transporter, major facilitator family; major facilitator superfamily protein 1967003 12705415 EcDH1_1814 Escherichia coli DH1 major facilitator superfamily protein YP_006091762.1 1965630 R 536056 CDS YP_006091763.1 386595363 12705417 complement(1967501..1968481) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 1968481 12705417 EcDH1_1816 Escherichia coli DH1 transposase IS4 family protein YP_006091763.1 1967501 R 536056 CDS YP_006091764.1 386595364 12705418 complement(1969314..1969553) 1 NC_017625.1 KEGG: sdy:SDY_1974 hypothetical protein; hypothetical protein 1969553 12705418 EcDH1_1817 Escherichia coli DH1 hypothetical protein YP_006091764.1 1969314 R 536056 CDS YP_006091765.1 386595365 12705419 1969712..1969855 1 NC_017625.1 KEGG: sdy:SDY_1973 hypothetical protein; hypothetical protein 1969855 12705419 EcDH1_1818 Escherichia coli DH1 hypothetical protein YP_006091765.1 1969712 D 536056 CDS YP_006091766.1 386595366 12705420 1969930..1970217 1 NC_017625.1 KEGG: sbc:SbBS512_E2092 hypothetical protein; hypothetical protein 1970217 12705420 EcDH1_1819 Escherichia coli DH1 hypothetical protein YP_006091766.1 1969930 D 536056 CDS YP_006091767.1 386595367 12705421 1971043..1971252 1 NC_017625.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: kpn:KPN_02340 cold shock protein; cold-shock protein 1971252 12705421 EcDH1_1820 Escherichia coli DH1 cold-shock protein YP_006091767.1 1971043 D 536056 CDS YP_006091768.1 386595368 12705422 1971418..1972227 1 NC_017625.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_1968 23S rRNA methyltransferase A; rRNA (guanine-N(1)-)-methyltransferase 1972227 12705422 EcDH1_1821 Escherichia coli DH1 rRNA (guanine-N(1)-)-methyltransferase YP_006091768.1 1971418 D 536056 CDS YP_006091769.1 386595369 12705423 complement(1972224..1972790) 1 NC_017625.1 PFAM: protein of unknown function DUF204; KEGG: sdy:SDY_1967 hypothetical protein; hypothetical protein 1972790 12705423 EcDH1_1822 Escherichia coli DH1 hypothetical protein YP_006091769.1 1972224 R 536056 CDS YP_006091770.1 386595370 12705424 complement(1973219..1973677) 1 NC_017625.1 PFAM: protein of unknown function DUF986; KEGG: sdy:SDY_1966 hypothetical protein; hypothetical protein 1973677 12705424 EcDH1_1823 Escherichia coli DH1 hypothetical protein YP_006091770.1 1973219 R 536056 CDS YP_006091771.1 386595371 12705425 complement(1973732..1974583) 1 NC_017625.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: sdy:SDY_1965 mannose-specific PTS system protein IID; PTS system mannose/fructose/sorbose family transporter subunit IID 1974583 12705425 EcDH1_1824 Escherichia coli DH1 PTS system mannose/fructose/sorbose family transporter subunit IID YP_006091771.1 1973732 R 536056 CDS YP_006091772.1 386595372 12705426 complement(1974596..1975396) 1 NC_017625.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: sbc:SbBS512_E2084 PTS system, mannose-specific IIC component; PTS system mannose/fructose/sorbose family transporter subunit IIC 1975396 12705426 EcDH1_1825 Escherichia coli DH1 PTS system mannose/fructose/sorbose family transporter subunit IIC YP_006091772.1 1974596 R 536056 CDS YP_006091773.1 386595373 12705427 complement(1975459..1976430) 1 NC_017625.1 KEGG: sbc:SbBS512_E2083 PTS system, mannose-specific IIAB component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIA 1976430 12705427 EcDH1_1826 Escherichia coli DH1 PTS system mannose/fructose/sorbose family transporter subunit IIA YP_006091773.1 1975459 R 536056 CDS YP_006091774.1 386595374 12705428 1976893..1978449 1 NC_017625.1 PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: sbc:SbBS512_E2082 membrane protein, TerC family/CBS/transporter associated domain protein; integral membrane protein TerC 1978449 12705428 EcDH1_1827 Escherichia coli DH1 integral membrane protein TerC YP_006091774.1 1976893 D 536056 CDS YP_006091775.1 386595375 12705429 complement(1978453..1980051) 1 NC_017625.1 PFAM: EAL domain protein; KEGG: ssn:SSON_1345 hypothetical protein; diguanylate phosphodiesterase 1980051 12705429 EcDH1_1828 Escherichia coli DH1 diguanylate phosphodiesterase YP_006091775.1 1978453 R 536056 CDS YP_006091776.1 386595376 12705430 complement(1980182..1981546) 1 NC_017625.1 KEGG: sbo:SBO_1270 L-serine deaminase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1981546 12705430 EcDH1_1829 Escherichia coli DH1 L-serine dehydratase 1 YP_006091776.1 1980182 R 536056 CDS YP_006091777.1 386595377 12705431 complement(1981730..1982308) 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_1719 hypothetical protein; NUDIX hydrolase 1982308 12705431 EcDH1_1830 Escherichia coli DH1 NUDIX hydrolase YP_006091777.1 1981730 R 536056 CDS YP_006091778.1 386595378 12705432 complement(1982312..1983673) 1 NC_017625.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: ssn:SSON_1348 p-aminobenzoate synthetase, component I; para-aminobenzoate synthase subunit I 1983673 12705432 EcDH1_1831 Escherichia coli DH1 para-aminobenzoate synthase subunit I YP_006091778.1 1982312 R 536056 CDS YP_006091779.1 386595379 12705433 1983747..1983926 1 NC_017625.1 PFAM: protein of unknown function UPF0181; KEGG: sdy:SDY_1717 hypothetical protein; hypothetical protein 1983926 12705433 EcDH1_1832 Escherichia coli DH1 hypothetical protein YP_006091779.1 1983747 D 536056 CDS YP_006091780.1 386595380 12705434 complement(1984046..1984345) 1 NC_017625.1 PFAM: Domain of unknown function DUF1889; KEGG: sbo:SBO_1276 hypothetical protein; hypothetical protein 1984345 12705434 EcDH1_1833 Escherichia coli DH1 hypothetical protein YP_006091780.1 1984046 R 536056 CDS YP_006091781.1 386595381 12705435 complement(1984767..1985114) 1 NC_017625.1 PFAM: Endoribonuclease L-PSP; KEGG: sdy:SDY_1713 hypothetical protein; endoribonuclease L-PSP 1985114 12705435 EcDH1_1834 Escherichia coli DH1 endoribonuclease L-PSP YP_006091781.1 1984767 R 536056 CDS YP_006091782.1 386595382 12705436 1985243..1987153 1 NC_017625.1 SMART: helicase c2; DEAD-like helicases; KEGG: sbo:SBO_1280 putative enzyme; helicase c2 1987153 12705436 EcDH1_1835 Escherichia coli DH1 helicase c2 YP_006091782.1 1985243 D 536056 CDS YP_006091783.1 386595383 12705437 1987211..1987906 1 NC_017625.1 PFAM: peptidase M22 glycoprotease; KEGG: sfv:SFV_1422 hypothetical protein; peptidase M22 glycoprotease 1987906 12705437 EcDH1_1836 Escherichia coli DH1 peptidase M22 glycoprotease YP_006091783.1 1987211 D 536056 CDS YP_006091784.1 386595384 12705438 1987946..1988527 1 NC_017625.1 TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: sfv:SFV_1423 putative outer membrane protein; outer membrane lipoprotein, Slp family 1988527 12705438 EcDH1_1837 Escherichia coli DH1 outer membrane lipoprotein, Slp family YP_006091784.1 1987946 D 536056 CDS YP_006091785.1 386595385 12705439 1988666..1990417 1 NC_017625.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sfx:S1538 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 1990417 12705439 EcDH1_1838 Escherichia coli DH1 AMP-dependent synthetase and ligase YP_006091785.1 1988666 D 536056 CDS YP_006091786.1 386595386 12705440 1990499..1991614 1 NC_017625.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: sfv:SFV_1425 ribonuclease D; ribonuclease D 1991614 12705440 EcDH1_1839 Escherichia coli DH1 ribonuclease D YP_006091786.1 1990499 D 536056 CDS YP_006091787.1 386595387 12705441 complement(1991668..1992633) 1 NC_017625.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ssn:SSON_1358 putative diogenase beta subunit; ferredoxin 1992633 12705441 EcDH1_1840 Escherichia coli DH1 ferredoxin YP_006091787.1 1991668 R 536056 CDS YP_006091788.1 386595388 12705442 complement(1992689..1993813) 1 NC_017625.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: ssn:SSON_1359 hypothetical protein; Rieske (2Fe-2S) domain-containing protein 1993813 12705442 EcDH1_1841 Escherichia coli DH1 Rieske (2Fe-2S) domain-containing protein YP_006091788.1 1992689 R 536056 CDS YP_006091789.1 386595389 12705443 complement(1993845..1995275) 1 NC_017625.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sbo:SBO_1287 putative transporter; choline/carnitine/betaine transporter 1995275 12705443 EcDH1_1842 Escherichia coli DH1 choline/carnitine/betaine transporter YP_006091789.1 1993845 R 536056 CDS YP_006091790.1 386595390 12705444 complement(1995481..1996566) 1 NC_017625.1 KEGG: ssn:SSON_1361 putative tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1996566 12705444 EcDH1_1843 Escherichia coli DH1 tartrate dehydrogenase YP_006091790.1 1995481 R 536056 CDS YP_006091791.1 386595391 12705445 1996669..1997592 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_1289 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 1997592 12705445 EcDH1_1844 Escherichia coli DH1 LysR family transcriptional regulator YP_006091791.1 1996669 D 536056 CDS YP_006091792.1 386595392 12705446 1997719..1998357 1 NC_017625.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sdy:SDY_1698 leucine export protein LeuE; lysine exporter protein LysE/YggA 1998357 12705446 EcDH1_1845 Escherichia coli DH1 lysine exporter protein LysE/YggA YP_006091792.1 1997719 D 536056 CDS YP_006091793.1 386595393 12705447 1998530..1998889 1 NC_017625.1 PFAM: Protein of unknown function DUF1971; KEGG: sdy:SDY_1697 hypothetical protein; hypothetical protein 1998889 12705447 EcDH1_1846 Escherichia coli DH1 hypothetical protein YP_006091793.1 1998530 D 536056 CDS YP_006091794.1 386595394 12705448 1998893..1999075 1 NC_017625.1 PFAM: Domain of unknown function DUF1869; KEGG: sdy:SDY_1696 hypothetical protein; hypothetical protein 1999075 12705448 EcDH1_1847 Escherichia coli DH1 hypothetical protein YP_006091794.1 1998893 D 536056 CDS YP_006091795.1 386595395 12705449 1999223..1999471 1 NC_017625.1 PFAM: Transglycosylase-associated protein; KEGG: sdy:SDY_1695 hypothetical protein; transglycosylase 1999471 12705449 EcDH1_1848 Escherichia coli DH1 transglycosylase YP_006091795.1 1999223 D 536056 CDS YP_006091796.1 386595396 12705450 complement(1999738..2000763) 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: sdy:SDY_1692 hypothetical protein; GAF sensor-containing diguanylate cyclase 2000763 12705450 EcDH1_1849 Escherichia coli DH1 GAF sensor-containing diguanylate cyclase YP_006091796.1 1999738 R 536056 CDS YP_006091797.1 386595397 12705451 2000946..2001200 1 NC_017625.1 PFAM: protein of unknown function DUF333; KEGG: sfx:S1546 hypothetical protein; hypothetical protein 2001200 12705451 EcDH1_1850 Escherichia coli DH1 hypothetical protein YP_006091797.1 2000946 D 536056 CDS YP_006091798.1 386595398 12705452 complement(2001222..2001569) 1 NC_017625.1 PFAM: protein of unknown function DUF488; KEGG: ssn:SSON_1369 hypothetical protein; hypothetical protein 2001569 12705452 EcDH1_1851 Escherichia coli DH1 hypothetical protein YP_006091798.1 2001222 R 536056 CDS YP_006091799.1 386595399 12705453 complement(2001624..2002805) 1 NC_017625.1 TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1302 putative amino acid/amine transport protein; cyanate transporter 2002805 12705453 EcDH1_1852 Escherichia coli DH1 cyanate transporter YP_006091799.1 2001624 R 536056 CDS YP_006091800.1 386595400 12705454 2002905..2003723 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbo:SBO_1303 putative AraC-type regulatory protein; AraC family transcriptional regulator 2003723 12705454 EcDH1_1853 Escherichia coli DH1 AraC family transcriptional regulator YP_006091800.1 2002905 D 536056 CDS YP_006091801.1 386595401 12705455 complement(2003680..2004126) 1 NC_017625.1 PFAM: protein of unknown function DUF441; KEGG: sbo:SBO_1304 hypothetical protein; hypothetical protein 2004126 12705455 EcDH1_1854 Escherichia coli DH1 hypothetical protein YP_006091801.1 2003680 R 536056 CDS YP_006091802.1 386595402 12705456 complement(2004401..2004904) 1 NC_017625.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sdy:SDY_1685 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 2004904 12705456 EcDH1_1855 Escherichia coli DH1 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_006091802.1 2004401 R 536056 CDS YP_006091803.1 386595403 12705457 complement(2004947..2006437) 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1375 hypothetical protein; diguanylate cyclase 2006437 12705457 EcDH1_1856 Escherichia coli DH1 diguanylate cyclase YP_006091803.1 2004947 R 536056 CDS YP_006091804.1 386595404 12705458 complement(2006618..2008093) 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1377 hypothetical protein; diguanylate cyclase 2008093 12705458 EcDH1_1857 Escherichia coli DH1 diguanylate cyclase YP_006091804.1 2006618 R 536056 CDS YP_006091805.1 386595405 12705459 complement(2008240..2009523) 1 NC_017625.1 PFAM: protein of unknown function DUF444; KEGG: sbo:SBO_1309 hypothetical protein; hypothetical protein 2009523 12705459 EcDH1_1858 Escherichia coli DH1 hypothetical protein YP_006091805.1 2008240 R 536056 CDS YP_006091806.1 386595406 12705460 complement(2009636..2011570) 1 NC_017625.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: sbo:SBO_1310 hypothetical protein; putative serine protein kinase PrkA 2011570 12705460 EcDH1_1859 Escherichia coli DH1 putative serine protein kinase PrkA YP_006091806.1 2009636 R 536056 CDS YP_006091807.1 386595407 12705461 2012006..2012752 1 NC_017625.1 PFAM: MltA-interacting MipA family protein; KEGG: sdy:SDY_1485 hypothetical protein; MltA-interacting MipA family protein 2012752 12705461 EcDH1_1860 Escherichia coli DH1 MltA-interacting MipA family protein YP_006091807.1 2012006 D 536056 CDS YP_006091808.1 386595408 12705462 2012842..2013696 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: ssn:SSON_1381 putative an aldehyde reductase; aldo/keto reductase 2013696 12705462 EcDH1_1861 Escherichia coli DH1 aldo/keto reductase YP_006091808.1 2012842 D 536056 CDS YP_006091809.1 386595409 12705463 complement(2013744..2014628) 1 NC_017625.1 PFAM: Aldose 1-epimerase; KEGG: sfv:SFV_1435 hypothetical protein; aldose 1-epimerase 2014628 12705463 EcDH1_1862 Escherichia coli DH1 aldose 1-epimerase YP_006091809.1 2013744 R 536056 CDS YP_006091810.1 386595410 12705464 complement(2014712..2015707) 1 NC_017625.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: sdy:SDY_1488 glyceraldehyde-3-phosphate dehydrogenase A; glyceraldehyde-3-phosphate dehydrogenase, type I 2015707 12705464 EcDH1_1863 Escherichia coli DH1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_006091810.1 2014712 R 536056 CDS YP_006091811.1 386595411 12705465 2016049..2016462 1 NC_017625.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: ssn:SSON_1385 methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 2016462 12705465 EcDH1_1864 Escherichia coli DH1 methionine-R-sulfoxide reductase YP_006091811.1 2016049 D 536056 CDS YP_006091812.1 386595412 12705466 2016504..2016776 1 NC_017625.1 PFAM: protein of unknown function DUF1315; KEGG: sbc:SbBS512_E2024 hypothetical protein; hypothetical protein 2016776 12705466 EcDH1_1865 Escherichia coli DH1 hypothetical protein YP_006091812.1 2016504 D 536056 CDS YP_006091813.1 386595413 12705467 2017146..2018222 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sdy:SDY_1491 putative oxidoreductase; alcohol dehydrogenase 2018222 12705467 EcDH1_1866 Escherichia coli DH1 alcohol dehydrogenase YP_006091813.1 2017146 D 536056 CDS YP_006091814.1 386595414 12705468 2018249..2019628 1 NC_017625.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_1492 putative transport protein; major facilitator superfamily protein 2019628 12705468 EcDH1_1867 Escherichia coli DH1 major facilitator superfamily protein YP_006091814.1 2018249 D 536056 CDS YP_006091815.1 386595415 12705469 2019645..2020688 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: set:SEN1756 putative oxidoreductase; alcohol dehydrogenase 2020688 12705469 EcDH1_1868 Escherichia coli DH1 alcohol dehydrogenase YP_006091815.1 2019645 D 536056 CDS YP_006091816.1 386595416 12705470 2020709..2021545 1 NC_017625.1 KEGG: sfx:S1565 putative aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; ketose-bisphosphate aldolase 2021545 12705470 EcDH1_1869 Escherichia coli DH1 ketose-bisphosphate aldolase YP_006091816.1 2020709 D 536056 CDS YP_006091817.1 386595417 12705471 2021550..2022497 1 NC_017625.1 PFAM: PfkB domain protein; KEGG: sfx:S1566 putative kinase; PfkB domain-containing protein 2022497 12705471 EcDH1_1870 Escherichia coli DH1 PfkB domain-containing protein YP_006091817.1 2021550 D 536056 CDS YP_006091818.1 386595418 12705472 2022507..2023487 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: sfv:SFV_1444 hypothetical protein; aldo/keto reductase 2023487 12705472 EcDH1_1871 Escherichia coli DH1 aldo/keto reductase YP_006091818.1 2022507 D 536056 CDS YP_006091819.1 386595419 12705473 2023624..2024382 1 NC_017625.1 PFAM: regulatory protein DeoR; KEGG: sdy:SDY_1498 putative DeoR-type transcriptional regulator; DeoR family transcriptional regulator 2024382 12705473 EcDH1_1872 Escherichia coli DH1 DeoR family transcriptional regulator YP_006091819.1 2023624 D 536056 CDS YP_006091820.1 386595420 12705474 2024499..2025857 1 NC_017625.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sfx:S1569 putative transport protein; major facilitator superfamily protein 2025857 12705474 EcDH1_1873 Escherichia coli DH1 major facilitator superfamily protein YP_006091820.1 2024499 D 536056 CDS YP_006091821.1 386595421 12705475 complement(2025950..2026591) 1 NC_017625.1 PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_1387 nicotinamidase/pyrazinamidase; nicotinamidase 2026591 12705475 EcDH1_1874 Escherichia coli DH1 nicotinamidase YP_006091821.1 2025950 R 536056 CDS YP_006091822.1 386595422 12705476 complement(2026602..2027618) 1 NC_017625.1 TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: ssn:SSON_1388 cytoplasmic asparaginase I; type I L-asparaginase 2027618 12705476 EcDH1_1875 Escherichia coli DH1 type I L-asparaginase YP_006091822.1 2026602 R 536056 CDS YP_006091823.1 386595423 12705477 complement(2027785..2029641) 1 NC_017625.1 KEGG: sbc:SbBS512_E2021 protease 4; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 67K type 2029641 12705477 EcDH1_1876 Escherichia coli DH1 signal peptide peptidase SppA, 67K type YP_006091823.1 2027785 R 536056 CDS YP_006091824.1 386595424 12705478 2029802..2030353 1 NC_017625.1 PFAM: nitroreductase; KEGG: sbo:SBO_1322 hypothetical protein; nitroreductase 2030353 12705478 EcDH1_1877 Escherichia coli DH1 nitroreductase YP_006091824.1 2029802 D 536056 CDS YP_006091825.1 386595425 12705479 2030470..2031513 1 NC_017625.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sdy:SDY_1509 selenophosphate synthetase; selenide, water dikinase 2031513 12705479 EcDH1_1878 Escherichia coli DH1 selenide, water dikinase YP_006091825.1 2030470 D 536056 CDS YP_006091826.1 386595426 12705480 2031518..2033479 1 NC_017625.1 KEGG: sbo:SBO_1324 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III 2033479 12705480 EcDH1_1879 Escherichia coli DH1 DNA topoisomerase III YP_006091826.1 2031518 D 536056 CDS YP_006091827.1 386595427 12705481 2033607..2034647 1 NC_017625.1 KEGG: sfl:SF1461 hypothetical protein; hypothetical protein 2034647 12705481 EcDH1_1880 Escherichia coli DH1 hypothetical protein YP_006091827.1 2033607 D 536056 CDS YP_006091828.1 386595428 12705482 complement(2034764..2036107) 1 NC_017625.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: ssn:SSON_1395 glutamate dehydrogenase; glutamate dehydrogenase 2036107 12705482 EcDH1_1881 Escherichia coli DH1 glutamate dehydrogenase YP_006091828.1 2034764 R 536056 CDS YP_006091829.1 386595429 12705483 2036343..2036615 1 NC_017625.1 PFAM: protein of unknown function DUF1496; KEGG: sbc:SbBS512_E2012 hypothetical protein; hypothetical protein 2036615 12705483 EcDH1_1882 Escherichia coli DH1 hypothetical protein YP_006091829.1 2036343 D 536056 CDS YP_006091830.1 386595430 12705484 complement(2036581..2036988) 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_1516 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; NUDIX hydrolase 2036988 12705484 EcDH1_1883 Escherichia coli DH1 NUDIX hydrolase YP_006091830.1 2036581 R 536056 CDS YP_006091831.1 386595431 12705485 2037075..2037695 1 NC_017625.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sfx:S1582 putative cytochrome oxidase; CDP-alcohol phosphatidyltransferase 2037695 12705485 EcDH1_1884 Escherichia coli DH1 CDP-alcohol phosphatidyltransferase YP_006091831.1 2037075 D 536056 CDS YP_006091832.1 386595432 12705486 complement(2037704..2039011) 1 NC_017625.1 PFAM: Rhodanese domain protein; KEGG: sbo:SBO_1332 putative thiosulfate sulfur transferase; Rhodanese domain-containing protein 2039011 12705486 EcDH1_1885 Escherichia coli DH1 Rhodanese domain-containing protein YP_006091832.1 2037704 R 536056 CDS YP_006091833.1 386595433 12705487 complement(2039078..2039731) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfv:SFV_1462 putative ATP-binding component of a transport system; ABC transporter 2039731 12705487 EcDH1_1886 Escherichia coli DH1 ABC transporter YP_006091833.1 2039078 R 536056 CDS YP_006091834.1 386595434 12705488 complement(2039731..2041266) 1 NC_017625.1 KEGG: sbc:SbBS512_E2004 ABC transporter, permease protein; ABC transporter permease 2041266 12705488 EcDH1_1887 Escherichia coli DH1 ABC transporter permease YP_006091834.1 2039731 R 536056 CDS YP_006091835.1 386595435 12705489 complement(2041239..2042405) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1403 hypothetical protein; extracellular solute-binding protein 2042405 12705489 EcDH1_1888 Escherichia coli DH1 extracellular solute-binding protein YP_006091835.1 2041239 R 536056 CDS YP_006091836.1 386595436 12705490 complement(2042415..2042963) 1 NC_017625.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: sbc:SbBS512_E2002 carboxymuconolactone decarboxylase family protein; Carboxymuconolactone decarboxylase 2042963 12705490 EcDH1_1889 Escherichia coli DH1 Carboxymuconolactone decarboxylase YP_006091836.1 2042415 R 536056 CDS YP_006091837.1 386595437 12705491 complement(2042963..2043670) 1 NC_017625.1 PFAM: SNARE associated Golgi protein; KEGG: sbc:SbBS512_E2001 hypothetical protein; hypothetical protein 2043670 12705491 EcDH1_1890 Escherichia coli DH1 hypothetical protein YP_006091837.1 2042963 R 536056 CDS YP_006091838.1 386595438 12705492 complement(2043685..2044362) 1 NC_017625.1 KEGG: ssn:SSON_1406 hypothetical protein; hypothetical protein 2044362 12705492 EcDH1_1891 Escherichia coli DH1 hypothetical protein YP_006091838.1 2043685 R 536056 CDS YP_006091839.1 386595439 12705493 complement(2044367..2045077) 1 NC_017625.1 PFAM: SNARE associated Golgi protein; KEGG: ssn:SSON_1407 hypothetical protein; hypothetical protein 2045077 12705493 EcDH1_1892 Escherichia coli DH1 hypothetical protein YP_006091839.1 2044367 R 536056 CDS YP_006091840.1 386595440 12705494 complement(2045244..2046062) 1 NC_017625.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sbc:SbBS512_E1997 exodeoxyribonuclease III; exodeoxyribonuclease III 2046062 12705494 EcDH1_1893 Escherichia coli DH1 exodeoxyribonuclease III YP_006091840.1 2045244 R 536056 CDS YP_006091841.1 386595441 12705495 2046496..2047716 1 NC_017625.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; succinylornithine transaminase family; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: ssn:SSON_1409 bifunctional succinylornithine transaminase/acetylornithine transaminase; acetylornithine and succinylornithine aminotransferase 2047716 12705495 EcDH1_1894 Escherichia coli DH1 acetylornithine and succinylornithine aminotransferase YP_006091841.1 2046496 D 536056 CDS YP_006091842.1 386595442 12705496 2047713..2048747 1 NC_017625.1 KEGG: sdy:SDY_1530 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 2048747 12705496 EcDH1_1895 Escherichia coli DH1 arginine N-succinyltransferase YP_006091842.1 2047713 D 536056 CDS YP_006091843.1 386595443 12705497 2048744..2050222 1 NC_017625.1 TIGRFAM: succinylglutamic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: sfv:SFV_1474 succinylglutamic semialdehyde dehydrogenase; succinylglutamic semialdehyde dehydrogenase 2050222 12705497 EcDH1_1896 Escherichia coli DH1 succinylglutamic semialdehyde dehydrogenase YP_006091843.1 2048744 D 536056 CDS YP_006091844.1 386595444 12705498 2050219..2051562 1 NC_017625.1 TIGRFAM: succinylarginine dihydrolase; PFAM: Succinylarginine dihydrolase; KEGG: sbo:SBO_1345 succinylarginine dihydrolase; succinylarginine dihydrolase 2051562 12705498 EcDH1_1897 Escherichia coli DH1 succinylarginine dihydrolase YP_006091844.1 2050219 D 536056 CDS YP_006091845.1 386595445 12705499 2051555..2052523 1 NC_017625.1 TIGRFAM: succinylglutamate desuccinylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sbc:SbBS512_E1990 succinylglutamate desuccinylase; succinylglutamate desuccinylase 2052523 12705499 EcDH1_1898 Escherichia coli DH1 succinylglutamate desuccinylase YP_006091845.1 2051555 D 536056 CDS YP_006091846.1 386595446 12705500 2052853..2053338 1 NC_017625.1 PFAM: protein of unknown function Spy-related; KEGG: sfv:SFV_1477 periplasmic protein; hypothetical protein 2053338 12705500 EcDH1_1899 Escherichia coli DH1 hypothetical protein YP_006091846.1 2052853 D 536056 CDS YP_006091847.1 386595447 12705501 2053541..2054116 1 NC_017625.1 PFAM: protein of unknown function DUF886; KEGG: sfv:SFV_1478 hypothetical protein; hypothetical protein 2054116 12705501 EcDH1_1900 Escherichia coli DH1 hypothetical protein YP_006091847.1 2053541 D 536056 CDS YP_006091848.1 386595448 12705502 complement(2054076..2054963) 1 NC_017625.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: ssn:SSON_1417 endonuclease of nucleotide excision repair; Excinuclease ABC C subunit domain-containing protein 2054963 12705502 EcDH1_1901 Escherichia coli DH1 Excinuclease ABC C subunit domain-containing protein YP_006091848.1 2054076 R 536056 CDS YP_006091849.1 386595449 12705503 complement(2055193..2056020) 1 NC_017625.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; KEGG: sbo:SBO_1350 NAD synthetase; NAD+ synthetase 2056020 12705503 EcDH1_1902 Escherichia coli DH1 NAD+ synthetase YP_006091849.1 2055193 R 536056 CDS YP_006091850.1 386595450 12705504 2056222..2056560 1 NC_017625.1 PFAM: SmpA/OmlA domain protein; KEGG: sdy:SDY_1541 DNA-binding transcriptional activator; SmpA/OmlA domain-containing protein 2056560 12705504 EcDH1_1903 Escherichia coli DH1 SmpA/OmlA domain-containing protein YP_006091850.1 2056222 D 536056 CDS YP_006091851.1 386595451 12705505 2056859..2057179 1 NC_017625.1 TIGRFAM: PTS system, lactose/cellobiose family IIB subunit; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sbo:SBO_1352 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB; PTS system lactose/cellobiose family transporter subunit IIB 2057179 12705505 EcDH1_1904 Escherichia coli DH1 PTS system lactose/cellobiose family transporter subunit IIB YP_006091851.1 2056859 D 536056 CDS YP_006091852.1 386595452 12705506 2057264..2058622 1 NC_017625.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PTS system, cellobiose-specific IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: ssn:SSON_1421 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC; PTS system lactose/cellobiose family transporter subunit IIC 2058622 12705506 EcDH1_1905 Escherichia coli DH1 PTS system lactose/cellobiose family transporter subunit IIC YP_006091852.1 2057264 D 536056 CDS YP_006091853.1 386595453 12705507 2058673..2059023 1 NC_017625.1 TIGRFAM: PTS system, lactose-specific IIa component; PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: ssn:SSON_1422 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA; PTS system, lactose-specific IIa component 2059023 12705507 EcDH1_1906 Escherichia coli DH1 PTS system, lactose-specific IIa component YP_006091853.1 2058673 D 536056 CDS YP_006091854.1 386595454 12705508 2059034..2059873 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: ssn:SSON_1423 DNA-binding transcriptional dual regulator; AraC family transcriptional regulator 2059873 12705508 EcDH1_1907 Escherichia coli DH1 AraC family transcriptional regulator YP_006091854.1 2059034 D 536056 CDS YP_006091855.1 386595455 12705509 2059978..2061330 1 NC_017625.1 PFAM: glycoside hydrolase family 4; KEGG: ssn:SSON_1424 cryptic phospho-beta-glucosidase; glycoside hydrolase family protein 2061330 12705509 EcDH1_1908 Escherichia coli DH1 glycoside hydrolase family protein YP_006091855.1 2059978 D 536056 CDS YP_006091856.1 386595456 12705510 2061343..2062092 1 NC_017625.1 PFAM: YdjC family protein; KEGG: ssn:SSON_1425 hypothetical protein; hypothetical protein 2062092 12705510 EcDH1_1909 Escherichia coli DH1 hypothetical protein YP_006091856.1 2061343 D 536056 CDS YP_006091857.1 386595457 12705511 complement(2062350..2064611) 1 NC_017625.1 PFAM: Catalase domain protein; KEGG: ssn:SSON_1426 hydroperoxidase II; catalase 2064611 12705511 EcDH1_1910 Escherichia coli DH1 catalase YP_006091857.1 2062350 R 536056 CDS YP_006091858.1 386595458 12705512 2064794..2065057 1 NC_017625.1 KEGG: ssn:SSON_1427 cell division modulator; cell division modulator 2065057 12705512 EcDH1_1911 Escherichia coli DH1 cell division modulator YP_006091858.1 2064794 D 536056 CDS YP_006091859.1 386595459 12705513 2065346..2066149 1 NC_017625.1 KEGG: sfl:SF1498 hypothetical protein; hypothetical protein 2066149 12705513 EcDH1_1912 Escherichia coli DH1 hypothetical protein YP_006091859.1 2065346 D 536056 CDS YP_006091860.1 386595460 12705514 complement(2066153..2067544) 1 NC_017625.1 PFAM: sodium:dicarboxylate symporter; KEGG: sbo:SBO_1361 kinase fragment; sodium:dicarboxylate symporter 2067544 12705514 EcDH1_1913 Escherichia coli DH1 sodium:dicarboxylate symporter YP_006091860.1 2066153 R 536056 CDS YP_006091861.1 386595461 12705515 complement(2067677..2068267) 1 NC_017625.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: ssn:SSON_1429 hypothetical protein; membrane-bound metal-dependent hydrolase 2068267 12705515 EcDH1_1914 Escherichia coli DH1 membrane-bound metal-dependent hydrolase YP_006091861.1 2067677 R 536056 CDS YP_006091862.1 386595462 12705516 complement(2068430..2069098) 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sbc:SbBS512_E1972 HAD-superfamily hydrolase, subfamily IA; HAD-superfamily hydrolase 2069098 12705516 EcDH1_1915 Escherichia coli DH1 HAD-superfamily hydrolase YP_006091862.1 2068430 R 536056 CDS YP_006091863.1 386595463 12705517 2069245..2069781 1 NC_017625.1 KEGG: sdy:SDY_1819 hypothetical protein; hypothetical protein 2069781 12705517 EcDH1_1916 Escherichia coli DH1 hypothetical protein YP_006091863.1 2069245 D 536056 CDS YP_006091864.1 386595464 12705518 complement(2069822..2070682) 1 NC_017625.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: sdy:SDY_1818 hypothetical protein; fructosamine kinase 2070682 12705518 EcDH1_1917 Escherichia coli DH1 fructosamine kinase YP_006091864.1 2069822 R 536056 CDS YP_006091865.1 386595465 12705519 complement(2070788..2071078) 1 NC_017625.1 KEGG: sdy:SDY_1817 hypothetical protein; hypothetical protein 2071078 12705519 EcDH1_1918 Escherichia coli DH1 hypothetical protein YP_006091865.1 2070788 R 536056 CDS YP_006091866.1 386595466 12705520 complement(2071179..2072108) 1 NC_017625.1 TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E1968 6-phosphofructokinase; 1-phosphofructokinase 2072108 12705520 EcDH1_1919 Escherichia coli DH1 1-phosphofructokinase YP_006091866.1 2071179 R 536056 CDS YP_006091867.1 386595467 12705521 2072395..2073153 1 NC_017625.1 PFAM: protein of unknown function DUF481; KEGG: sbc:SbBS512_E1967 hypothetical protein; hypothetical protein 2073153 12705521 EcDH1_1920 Escherichia coli DH1 hypothetical protein YP_006091867.1 2072395 D 536056 CDS YP_006091868.1 386595468 12705522 complement(2073206..2073313) 1 NC_017625.1 KEGG: sbc:SbBS512_E1966 hypothetical protein; hypothetical protein 2073313 12705522 EcDH1_1921 Escherichia coli DH1 hypothetical protein YP_006091868.1 2073206 R 536056 CDS YP_006091869.1 386595469 12705524 2075908..2077836 1 NC_017625.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: ssn:SSON_1439 threonyl-tRNA synthetase; threonyl-tRNA synthetase 2077836 12705524 EcDH1_1923 Escherichia coli DH1 threonyl-tRNA synthetase YP_006091869.1 2075908 D 536056 CDS YP_006091870.1 386595470 12705525 2077840..2078382 1 NC_017625.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: stm:STM1334.c translation initiation factor IF-3; translation initiation factor IF-3 2078382 12705525 EcDH1_1924 Escherichia coli DH1 translation initiation factor IF-3 YP_006091870.1 2077840 D 536056 CDS YP_006091871.1 386595471 12705526 2078479..2078676 1 NC_017625.1 PFAM: ribosomal protein L35; KEGG: kpn:KPN_02178 50S ribosomal protein L35; 50S ribosomal protein L35 2078676 12705526 EcDH1_1925 Escherichia coli DH1 50S ribosomal protein L35 YP_006091871.1 2078479 D 536056 CDS YP_006091872.1 386595472 12705527 2078729..2079085 1 NC_017625.1 TIGRFAM: ribosomal protein L20; KEGG: cko:CKO_01742 50S ribosomal protein L20; 50S ribosomal protein L20 2079085 12705527 EcDH1_1926 Escherichia coli DH1 50S ribosomal protein L20 YP_006091872.1 2078729 D 536056 CDS YP_006091873.1 386595473 12705528 2079327..2079422 1 NC_017625.1 hypothetical protein 2079422 12705528 EcDH1_1927 Escherichia coli DH1 hypothetical protein YP_006091873.1 2079327 D 536056 CDS YP_006091874.1 386595474 12705529 2079536..2080519 1 NC_017625.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: sbo:SBO_1379 phenylalanyl-tRNA synthetase subunit alpha; phenylalanyl-tRNA synthetase subunit alpha 2080519 12705529 EcDH1_1928 Escherichia coli DH1 phenylalanyl-tRNA synthetase subunit alpha YP_006091874.1 2079536 D 536056 CDS YP_006091875.1 386595475 12705530 2080534..2082921 1 NC_017625.1 KEGG: ssn:SSON_1445 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 2082921 12705530 EcDH1_1929 Escherichia coli DH1 phenylalanyl-tRNA synthetase subunit beta YP_006091875.1 2080534 D 536056 CDS YP_006091876.1 386595476 12705531 2082926..2083225 1 NC_017625.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_1807 integration host factor subunit alpha; integration host factor subunit alpha 2083225 12705531 EcDH1_1930 Escherichia coli DH1 integration host factor subunit alpha YP_006091876.1 2082926 D 536056 CDS YP_006091877.1 386595477 12705532 2083326..2084306 1 NC_017625.1 PFAM: transport system permease protein; KEGG: sfx:S1637 vtamin B12-transporter permease; transport system permease 2084306 12705532 EcDH1_1931 Escherichia coli DH1 transport system permease YP_006091877.1 2083326 D 536056 CDS YP_006091878.1 386595478 12705533 2084369..2084920 1 NC_017625.1 PFAM: glutathione peroxidase; KEGG: sfv:SFV_1513 putative glutathione peroxidase; glutathione peroxidase 2084920 12705533 EcDH1_1932 Escherichia coli DH1 glutathione peroxidase YP_006091878.1 2084369 D 536056 CDS YP_006091879.1 386595479 12705534 2084920..2085669 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_1804 vitamin B12-transporter ATPase; ABC transporter 2085669 12705534 EcDH1_1933 Escherichia coli DH1 ABC transporter YP_006091879.1 2084920 D 536056 CDS YP_006091880.1 386595480 12705535 2085747..2086211 1 NC_017625.1 PFAM: NLP/P60 protein; KEGG: ssn:SSON_1450 lipoprotein; NLP/P60 protein 2086211 12705535 EcDH1_1934 Escherichia coli DH1 NLP/P60 protein YP_006091880.1 2085747 D 536056 CDS YP_006091881.1 386595481 12705536 2086458..2087171 1 NC_017625.1 PFAM: EAL domain protein; KEGG: sbo:SBO_1421 hypothetical protein; diguanylate phosphodiesterase 2087171 12705536 EcDH1_1935 Escherichia coli DH1 diguanylate phosphodiesterase YP_006091881.1 2086458 D 536056 CDS YP_006091882.1 386595482 12705537 2087234..2088670 1 NC_017625.1 PFAM: protein of unknown function UPF0061; KEGG: sbc:SbBS512_E1910 hypothetical protein; hypothetical protein 2088670 12705537 EcDH1_1936 Escherichia coli DH1 hypothetical protein YP_006091882.1 2087234 D 536056 CDS YP_006091883.1 386595483 12705538 complement(2088674..2088865) 1 NC_017625.1 KEGG: sdy:SDY_1799 hypothetical protein; hypothetical protein 2088865 12705538 EcDH1_1937 Escherichia coli DH1 hypothetical protein YP_006091883.1 2088674 R 536056 CDS YP_006091884.1 386595484 12705539 complement(2088997..2090043) 1 NC_017625.1 KEGG: sdy:SDY_1798 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 2090043 12705539 EcDH1_1938 Escherichia coli DH1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_006091884.1 2088997 R 536056 CDS YP_006091885.1 386595485 12705540 complement(2090200..2091033) 1 NC_017625.1 PFAM: protein of unknown function DUF299; KEGG: sdy:SDY_1797 hypothetical protein; hypothetical protein 2091033 12705540 EcDH1_1939 Escherichia coli DH1 hypothetical protein YP_006091885.1 2090200 R 536056 CDS YP_006091886.1 386595486 12705541 2091366..2093744 1 NC_017625.1 TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfv:SFV_1522 phosphoenolpyruvate synthase; phosphoenolpyruvate synthase 2093744 12705541 EcDH1_1940 Escherichia coli DH1 phosphoenolpyruvate synthase YP_006091886.1 2091366 D 536056 CDS YP_006091887.1 386595487 12705542 complement(2093801..2095447) 1 NC_017625.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sbc:SbBS512_E1904 short-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2095447 12705542 EcDH1_1941 Escherichia coli DH1 AMP-dependent synthetase and ligase YP_006091887.1 2093801 R 536056 CDS YP_006091888.1 386595488 12705543 complement(2095504..2095797) 1 NC_017625.1 KEGG: sbc:SbBS512_E1903 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2095797 12705543 EcDH1_1942 Escherichia coli DH1 iron-sulfur cluster-binding protein YP_006091888.1 2095504 R 536056 CDS YP_006091889.1 386595489 12705544 complement(2095794..2097083) 1 NC_017625.1 PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: sfv:SFV_1525 hypothetical protein; electron-transferring-flavoprotein dehydrogenase 2097083 12705544 EcDH1_1943 Escherichia coli DH1 electron-transferring-flavoprotein dehydrogenase YP_006091889.1 2095794 R 536056 CDS YP_006091890.1 386595490 12705545 complement(2097139..2098077) 1 NC_017625.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: sfx:S1650 electron transfer flavoprotein subunit YdiR; electron transfer flavoprotein subunit alpha 2098077 12705545 EcDH1_1944 Escherichia coli DH1 electron transfer flavoprotein subunit alpha YP_006091890.1 2097139 R 536056 CDS YP_006091891.1 386595491 12705546 complement(2098097..2098861) 1 NC_017625.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sfx:S1651 putative electron transfer flavoprotein YdiQ; electron transfer flavoprotein subunit alpha/beta 2098861 12705546 EcDH1_1945 Escherichia coli DH1 electron transfer flavoprotein subunit alpha/beta YP_006091891.1 2098097 R 536056 CDS YP_006091892.1 386595492 12705547 2099177..2100088 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: sbc:SbBS512_E1899 transcriptional regulator, AraC family; AraC family transcriptional regulator 2100088 12705547 EcDH1_1946 Escherichia coli DH1 AraC family transcriptional regulator YP_006091892.1 2099177 D 536056 CDS YP_006091893.1 386595493 12705548 complement(2100131..2101282) 1 NC_017625.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sbc:SbBS512_E1898 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2101282 12705548 EcDH1_1947 Escherichia coli DH1 acyl-CoA dehydrogenase YP_006091893.1 2100131 R 536056 CDS YP_006091894.1 386595494 12705549 complement(2101296..2102891) 1 NC_017625.1 PFAM: coenzyme A transferase; KEGG: sbc:SbBS512_E1897 propionate CoA-transferase; coenzyme A transferase 2102891 12705549 EcDH1_1948 Escherichia coli DH1 coenzyme A transferase YP_006091894.1 2101296 R 536056 CDS YP_006091895.1 386595495 12705550 complement(2103034..2103792) 1 NC_017625.1 KEGG: sdy:SDY_1474 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type I; PFAM: dehydroquinase class I; 3-dehydroquinate dehydratase 2103792 12705550 EcDH1_1949 Escherichia coli DH1 3-dehydroquinate dehydratase YP_006091895.1 2103034 R 536056 CDS YP_006091896.1 386595496 12705551 complement(2103823..2104689) 1 NC_017625.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: sbc:SbBS512_E1895 putative shikimate 5-dehydrogenase; Quinate/shikimate dehydrogenase 2104689 12705551 EcDH1_1950 Escherichia coli DH1 Quinate/shikimate dehydrogenase YP_006091896.1 2103823 R 536056 CDS YP_006091897.1 386595497 12705552 complement(2104701..2105966) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1463 putative amino acid/amine transport protein; major facilitator superfamily protein 2105966 12705552 EcDH1_1951 Escherichia coli DH1 major facilitator superfamily protein YP_006091897.1 2104701 R 536056 CDS YP_006091898.1 386595498 12705553 complement(2106193..2107407) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S1852 putative transport system permease protein; major facilitator superfamily protein 2107407 12705553 EcDH1_1952 Escherichia coli DH1 major facilitator superfamily protein YP_006091898.1 2106193 R 536056 CDS YP_006091899.1 386595499 12705554 complement(2107507..2107863) 1 NC_017625.1 PFAM: Domain of unknown function DUF1870; KEGG: sdy:SDY_1679 hypothetical protein; hypothetical protein 2107863 12705554 EcDH1_1953 Escherichia coli DH1 hypothetical protein YP_006091899.1 2107507 R 536056 CDS YP_006091900.1 386595500 12705555 complement(2108292..2109404) 1 NC_017625.1 PFAM: protein of unknown function UPF0118; KEGG: sdy:SDY_1676 predicted inner membrane protein; hypothetical protein 2109404 12705555 EcDH1_1954 Escherichia coli DH1 hypothetical protein YP_006091900.1 2108292 R 536056 CDS YP_006091901.1 386595501 12705556 2109793..2112849 1 NC_017625.1 PFAM: FAD linked oxidase domain protein; KEGG: sbc:SbBS512_E1888 oxidoreductase, FAD-binding; FAD linked oxidase domain-containing protein 2112849 12705556 EcDH1_1955 Escherichia coli DH1 FAD linked oxidase domain-containing protein YP_006091901.1 2109793 D 536056 CDS YP_006091902.1 386595502 12705557 2112846..2113256 1 NC_017625.1 PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E1887 esterase YdiI; thioesterase superfamily protein 2113256 12705557 EcDH1_1956 Escherichia coli DH1 thioesterase superfamily protein YP_006091902.1 2112846 D 536056 CDS YP_006091903.1 386595503 12705558 2113356..2113544 1 NC_017625.1 KEGG: sbc:SbBS512_E1886 hypothetical protein; hypothetical protein 2113544 12705558 EcDH1_1957 Escherichia coli DH1 hypothetical protein YP_006091903.1 2113356 D 536056 CDS YP_006091904.1 386595504 12705559 2114092..2114460 1 NC_017625.1 TIGRFAM: FeS assembly scaffold SufA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sbo:SBO_1446 iron-sulfur cluster assembly scaffold protein; FeS assembly scaffold SufA 2114460 12705559 EcDH1_1958 Escherichia coli DH1 FeS assembly scaffold SufA YP_006091904.1 2114092 D 536056 CDS YP_006091905.1 386595505 12705560 2114469..2115956 1 NC_017625.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sbo:SBO_1447 cysteine desulfurase activator complex subunit SufB; FeS assembly protein SufB 2115956 12705560 EcDH1_1959 Escherichia coli DH1 FeS assembly protein SufB YP_006091905.1 2114469 D 536056 CDS YP_006091906.1 386595506 12705561 2115966..2116712 1 NC_017625.1 KEGG: ssn:SSON_1474 cysteine desulfurase ATPase component; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 2116712 12705561 EcDH1_1960 Escherichia coli DH1 FeS assembly ATPase SufC YP_006091906.1 2115966 D 536056 CDS YP_006091907.1 386595507 12705562 2116687..2117958 1 NC_017625.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: ssn:SSON_1475 cysteine desulfurase activator complex subunit SufD; FeS assembly protein SufD 2117958 12705562 EcDH1_1961 Escherichia coli DH1 FeS assembly protein SufD YP_006091907.1 2116687 D 536056 CDS YP_006091908.1 386595508 12705563 2117955..2119175 1 NC_017625.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: ssn:SSON_1476 selenocysteine lyase; SufS subfamily cysteine desulfurase 2119175 12705563 EcDH1_1962 Escherichia coli DH1 SufS subfamily cysteine desulfurase YP_006091908.1 2117955 D 536056 CDS YP_006091909.1 386595509 12705564 2119188..2119604 1 NC_017625.1 PFAM: Fe-S metabolism associated SufE; KEGG: sbc:SbBS512_E1880 cysteine desulfuration protein SufE; Fe-S metabolism associated SufE 2119604 12705564 EcDH1_1963 Escherichia coli DH1 Fe-S metabolism associated SufE YP_006091909.1 2119188 D 536056 CDS YP_006091910.1 386595510 12705565 2119753..2120757 1 NC_017625.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sfv:SFV_1701 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2120757 12705565 EcDH1_1964 Escherichia coli DH1 ErfK/YbiS/YcfS/YnhG family protein YP_006091910.1 2119753 D 536056 CDS YP_006091911.1 386595511 12705566 complement(2120821..2121057) 1 NC_017625.1 PFAM: LPP repeat-containing protein; KEGG: sdy:SDY_1908 murein lipoprotein; LPP repeat-containing protein 2121057 12705566 EcDH1_1965 Escherichia coli DH1 LPP repeat-containing protein YP_006091911.1 2120821 R 536056 CDS YP_006091912.1 386595512 12705567 complement(2121368..2122780) 1 NC_017625.1 KEGG: sbc:SbBS512_E1877 pyruvate kinase I; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2122780 12705567 EcDH1_1966 Escherichia coli DH1 pyruvate kinase YP_006091912.1 2121368 R 536056 CDS YP_006091913.1 386595513 12705568 2123337..2123546 1 NC_017625.1 KEGG: sdy:SDY_1904 hypothetical protein; hypothetical protein 2123546 12705568 EcDH1_1967 Escherichia coli DH1 hypothetical protein YP_006091913.1 2123337 D 536056 CDS YP_006091914.1 386595514 12705569 2124001..2124627 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 hypothetical protein; 4Fe-4S ferredoxin 2124627 12705569 EcDH1_1968 Escherichia coli DH1 4Fe-4S ferredoxin YP_006091914.1 2124001 D 536056 CDS YP_006091915.1 386595515 12705570 2124648..2126750 1 NC_017625.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: ssn:SSON_1483 hypothetical protein; Aldehyde ferredoxin oxidoreductase 2126750 12705570 EcDH1_1969 Escherichia coli DH1 Aldehyde ferredoxin oxidoreductase YP_006091915.1 2124648 D 536056 CDS YP_006091916.1 386595516 12705571 2126763..2127401 1 NC_017625.1 KEGG: sbo:SBO_1460 hypothetical protein; hypothetical protein 2127401 12705571 EcDH1_1970 Escherichia coli DH1 hypothetical protein YP_006091916.1 2126763 D 536056 CDS YP_006091917.1 386595517 12705572 2127465..2128133 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sdy:SDY_1899 putative oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin 2128133 12705572 EcDH1_1971 Escherichia coli DH1 4Fe-4S ferredoxin YP_006091917.1 2127465 D 536056 CDS YP_006091918.1 386595518 12705573 2128130..2128915 1 NC_017625.1 PFAM: cytochrome B561; KEGG: sbc:SbBS512_E1870 nickel-dependent hydrogenase, b-type cytochrome subunit; cytochrome B561 2128915 12705573 EcDH1_1972 Escherichia coli DH1 cytochrome B561 YP_006091918.1 2128130 D 536056 CDS YP_006091919.1 386595519 12705574 2128967..2129731 1 NC_017625.1 KEGG: sdy:SDY_1897 hypothetical protein; hypothetical protein 2129731 12705574 EcDH1_1973 Escherichia coli DH1 hypothetical protein YP_006091919.1 2128967 D 536056 CDS YP_006091920.1 386595520 12705575 complement(2129743..2131347) 1 NC_017625.1 KEGG: ssn:SSON_1488 hypothetical protein; hypothetical protein 2131347 12705575 EcDH1_1974 Escherichia coli DH1 hypothetical protein YP_006091920.1 2129743 R 536056 CDS YP_006091921.1 386595521 12705576 complement(2131473..2131778) 1 NC_017625.1 PFAM: Putative mono-oxygenase ydhR; KEGG: sbc:SbBS512_E1865 YdhR protein; Putative mono-oxygenase ydhR 2131778 12705576 EcDH1_1975 Escherichia coli DH1 Putative mono-oxygenase ydhR YP_006091921.1 2131473 R 536056 CDS YP_006091922.1 386595522 12705579 2132351..2133607 1 NC_017625.1 KEGG: sbc:SbBS512_E1862 hypothetical protein; hypothetical protein 2133607 12705579 EcDH1_1976 Escherichia coli DH1 hypothetical protein YP_006091922.1 2132351 D 536056 CDS YP_006091923.1 386595523 12705580 complement(2133648..2135021) 1 NC_017625.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sbo:SBO_1468 multidrug efflux protein; MATE efflux family protein 2135021 12705580 EcDH1_1977 Escherichia coli DH1 MATE efflux family protein YP_006091923.1 2133648 R 536056 CDS YP_006091924.1 386595524 12705581 2135236..2135877 1 NC_017625.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: sdy:SDY_1888 riboflavin synthase subunit alpha; riboflavin synthase subunit alpha 2135877 12705581 EcDH1_1978 Escherichia coli DH1 riboflavin synthase subunit alpha YP_006091924.1 2135236 D 536056 CDS YP_006091925.1 386595525 12705582 complement(2135917..2137065) 1 NC_017625.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ssn:SSON_1495 cyclopropane fatty acyl phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2137065 12705582 EcDH1_1979 Escherichia coli DH1 cyclopropane-fatty-acyl-phospholipid synthase YP_006091925.1 2135917 R 536056 CDS YP_006091926.1 386595526 12705583 complement(2137356..2138567) 1 NC_017625.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_1886 inner membrane transport protein YdhC; Bcr/CflA family multidrug resistance transporter 2138567 12705583 EcDH1_1980 Escherichia coli DH1 Bcr/CflA family multidrug resistance transporter YP_006091926.1 2137356 R 536056 CDS YP_006091927.1 386595527 12705584 2138680..2139612 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E1856 transcriptional regulator, LysR family; LysR family transcriptional regulator 2139612 12705584 EcDH1_1981 Escherichia coli DH1 LysR family transcriptional regulator YP_006091927.1 2138680 D 536056 CDS YP_006091928.1 386595528 12705585 complement(2139609..2140634) 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E1857 transcriptional repressor PurR; LacI family transcriptional regulator 2140634 12705585 EcDH1_1982 Escherichia coli DH1 LacI family transcriptional regulator YP_006091928.1 2139609 R 536056 CDS YP_006091929.1 386595529 12705586 2141188..2142357 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_1883 putative transport protein; major facilitator superfamily protein 2142357 12705586 EcDH1_1983 Escherichia coli DH1 major facilitator superfamily protein YP_006091929.1 2141188 D 536056 CDS YP_006091930.1 386595530 12705587 complement(2142519..2143100) 1 NC_017625.1 PFAM: manganese and iron superoxide dismutase; KEGG: sdy:SDY_1882 superoxide dismutase; Superoxide dismutase 2143100 12705587 EcDH1_1984 Escherichia coli DH1 Superoxide dismutase YP_006091930.1 2142519 R 536056 CDS YP_006091931.1 386595531 12705588 complement(2143228..2144043) 1 NC_017625.1 PFAM: NLP/P60 protein; KEGG: sbc:SbBS512_E1852 NlpC/P60 family protein; NLP/P60 protein 2144043 12705588 EcDH1_1985 Escherichia coli DH1 NLP/P60 protein YP_006091931.1 2143228 R 536056 CDS YP_006091932.1 386595532 12705589 2144377..2144724 1 NC_017625.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sdy:SDY_1880 hypothetical protein; glutaredoxin-like protein 2144724 12705589 EcDH1_1986 Escherichia coli DH1 glutaredoxin-like protein YP_006091932.1 2144377 D 536056 CDS YP_006091933.1 386595533 12705590 complement(2144775..2149391) 1 NC_017625.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: AAA ATPase; DEAD-like helicases; KEGG: sbo:SBO_1482 member of ATP-dependent helicase superfamily II; DEAD/DEAH box helicase 2149391 12705590 EcDH1_1987 Escherichia coli DH1 DEAD/DEAH box helicase YP_006091933.1 2144775 R 536056 CDS YP_006091934.1 386595534 12705591 complement(2149484..2150131) 1 NC_017625.1 KEGG: sdy:SDY_1878 ribonuclease T; TIGRFAM: ribonuclease T; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; ribonuclease T 2150131 12705591 EcDH1_1988 Escherichia coli DH1 ribonuclease T YP_006091934.1 2149484 R 536056 CDS YP_006091935.1 386595535 12705592 complement(2150234..2150641) 1 NC_017625.1 KEGG: sdy:SDY_1877 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2150641 12705592 EcDH1_1989 Escherichia coli DH1 lactoylglutathione lyase YP_006091935.1 2150234 R 536056 CDS YP_006091936.1 386595536 12705593 complement(2150722..2151819) 1 NC_017625.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ssn:SSON_1506 N-ethylmaleimide reductase, FMN-linked; NADH:flavin oxidoreductase 2151819 12705593 EcDH1_1990 Escherichia coli DH1 NADH:flavin oxidoreductase YP_006091936.1 2150722 R 536056 CDS YP_006091937.1 386595537 12705594 complement(2151856..2152455) 1 NC_017625.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E1841 transcriptional regulator, TetR family; TetR family transcriptional regulator 2152455 12705594 EcDH1_1991 Escherichia coli DH1 TetR family transcriptional regulator YP_006091937.1 2151856 R 536056 CDS YP_006091938.1 386595538 12705595 2152558..2152797 1 NC_017625.1 PFAM: protein of unknown function DUF1289; KEGG: sdy:SDY_1873 hypothetical protein; hypothetical protein 2152797 12705595 EcDH1_1992 Escherichia coli DH1 hypothetical protein YP_006091938.1 2152558 D 536056 CDS YP_006091939.1 386595539 12705596 2152846..2153742 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: ssn:SSON_1509 hypothetical protein; aldo/keto reductase 2153742 12705596 EcDH1_1993 Escherichia coli DH1 aldo/keto reductase YP_006091939.1 2152846 D 536056 CDS YP_006091940.1 386595540 12705597 2153823..2154344 1 NC_017625.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: sbc:SbBS512_E1838 superoxide dismutase (Cu-Zn); Superoxide dismutase 2154344 12705597 EcDH1_1994 Escherichia coli DH1 Superoxide dismutase YP_006091940.1 2153823 D 536056 CDS YP_006091941.1 386595541 12705598 complement(2154345..2156357) 1 NC_017625.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: sbc:SbBS512_E1837 fusaric acid resistance domain protein; fusaric acid resistance protein 2156357 12705598 EcDH1_1995 Escherichia coli DH1 fusaric acid resistance protein YP_006091941.1 2154345 R 536056 CDS YP_006091942.1 386595542 12705599 complement(2156357..2157214) 1 NC_017625.1 PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E1836 auxiliary transport protein, membrane fusion protein (MFP) family; secretion protein HlyD family protein 2157214 12705599 EcDH1_1996 Escherichia coli DH1 secretion protein HlyD family protein YP_006091942.1 2156357 R 536056 CDS YP_006091943.1 386595543 12705600 complement(2157217..2157453) 1 NC_017625.1 PFAM: protein of unknown function DUF1656; KEGG: ssn:SSON_1513 hypothetical protein; hypothetical protein 2157453 12705600 EcDH1_1997 Escherichia coli DH1 hypothetical protein YP_006091943.1 2157217 R 536056 CDS YP_006091944.1 386595544 12705601 2157654..2158088 1 NC_017625.1 PFAM: regulatory protein MarR; KEGG: sfv:SFV_1661 transcriptional regulator SlyA; MarR family transcriptional regulator 2158088 12705601 EcDH1_1998 Escherichia coli DH1 MarR family transcriptional regulator YP_006091944.1 2157654 D 536056 CDS YP_006091945.1 386595545 12705602 complement(2158135..2158602) 1 NC_017625.1 PFAM: 17 kDa surface antigen; KEGG: sdy:SDY_1864 putative outer membrane protein; 17 kDa surface antigen 2158602 12705602 EcDH1_1999 Escherichia coli DH1 17 kDa surface antigen YP_006091945.1 2158135 R 536056 CDS YP_006091946.1 386595546 12705603 2158876..2159985 1 NC_017625.1 PFAM: protein of unknown function UPF0075; KEGG: sdy:SDY_1863 anhydro-N-acetylmuramic acid kinase; hypothetical protein 2159985 12705603 EcDH1_2000 Escherichia coli DH1 hypothetical protein YP_006091946.1 2158876 D 536056 CDS YP_006091947.1 386595547 12705604 2160089..2160412 1 NC_017625.1 KEGG: sbc:SbBS512_E1831 putative lipoprotein; putative lipoprotein 2160412 12705604 EcDH1_2001 Escherichia coli DH1 putative lipoprotein YP_006091947.1 2160089 D 536056 CDS YP_006091948.1 386595548 12705605 2160471..2161127 1 NC_017625.1 KEGG: sdy:SDY_1861 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 2161127 12705605 EcDH1_2002 Escherichia coli DH1 pyridoxamine 5'-phosphate oxidase YP_006091948.1 2160471 D 536056 CDS YP_006091949.1 386595549 12705606 2161256..2162530 1 NC_017625.1 KEGG: sbc:SbBS512_E1829 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 2162530 12705606 EcDH1_2003 Escherichia coli DH1 tyrosyl-tRNA synthetase YP_006091949.1 2161256 D 536056 CDS YP_006091950.1 386595550 12705607 2162592..2163452 1 NC_017625.1 KEGG: sbo:SBO_1498 pyridoxamine kinase; TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; pyridoxal kinase 2163452 12705607 EcDH1_2004 Escherichia coli DH1 pyridoxal kinase YP_006091950.1 2162592 D 536056 CDS YP_006091951.1 386595551 12705608 complement(2163496..2164101) 1 NC_017625.1 PFAM: Glutathione S-transferase domain; KEGG: sdy:SDY_1858 glutathionine S-transferase; glutathione S-transferase 2164101 12705608 EcDH1_2005 Escherichia coli DH1 glutathione S-transferase YP_006091951.1 2163496 R 536056 CDS YP_006091952.1 386595552 12705609 complement(2164207..2165709) 1 NC_017625.1 KEGG: sbc:SbBS512_E1824 tripeptide permease TppB; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter 2165709 12705609 EcDH1_2006 Escherichia coli DH1 amino acid/peptide transporter YP_006091952.1 2164207 R 536056 CDS YP_006091953.1 386595553 12705610 complement(2165992..2166192) 1 NC_017625.1 KEGG: sbc:SbBS512_E1823 hypothetical protein; hypothetical protein 2166192 12705610 EcDH1_2007 Escherichia coli DH1 hypothetical protein YP_006091953.1 2165992 R 536056 CDS YP_006091954.1 386595554 12705611 complement(2166320..2166955) 1 NC_017625.1 KEGG: sbc:SbBS512_E1822 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; Endonuclease III/Nth; SMART: iron-sulfur cluster loop; endonuclease III 2166955 12705611 EcDH1_2008 Escherichia coli DH1 endonuclease III YP_006091954.1 2166320 R 536056 CDS YP_006091955.1 386595555 12705612 complement(2166955..2167650) 1 NC_017625.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: sdy:SDY_1855 SoxR-reducing system protein RsxE; RnfABCDGE type electron transport complex subunit E 2167650 12705612 EcDH1_2009 Escherichia coli DH1 RnfABCDGE type electron transport complex subunit E YP_006091955.1 2166955 R 536056 CDS YP_006091956.1 386595556 12705613 complement(2167654..2168274) 1 NC_017625.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: sbc:SbBS512_E1820 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G 2168274 12705613 EcDH1_2010 Escherichia coli DH1 RnfABCDGE type electron transport complex subunit G YP_006091956.1 2167654 R 536056 CDS YP_006091957.1 386595557 12705614 complement(2168278..2169336) 1 NC_017625.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: sfv:SFV_1647 electron transport complex protein RnfD; RnfABCDGE type electron transport complex subunit D 2169336 12705614 EcDH1_2011 Escherichia coli DH1 RnfABCDGE type electron transport complex subunit D YP_006091957.1 2168278 R 536056 CDS YP_006091958.1 386595558 12705615 complement(2169337..2171559) 1 NC_017625.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: ssn:SSON_1529 electron transport complex protein RnfC; RnfABCDGE type electron transport complex subunit C 2171559 12705615 EcDH1_2012 Escherichia coli DH1 RnfABCDGE type electron transport complex subunit C YP_006091958.1 2169337 R 536056 CDS YP_006091959.1 386595559 12705616 complement(2171552..2172130) 1 NC_017625.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: ssn:SSON_1530 electron transport complex protein RnfB; RnfABCDGE type electron transport complex subunit B 2172130 12705616 EcDH1_2013 Escherichia coli DH1 RnfABCDGE type electron transport complex subunit B YP_006091959.1 2171552 R 536056 CDS YP_006091960.1 386595560 12705617 complement(2172130..2172711) 1 NC_017625.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: sdy:SDY_1850 Na(+)-translocating NADH-quinone reductase subunit E; RnfABCDGE type electron transport complex subunit A 2172711 12705617 EcDH1_2014 Escherichia coli DH1 RnfABCDGE type electron transport complex subunit A YP_006091960.1 2172130 R 536056 CDS YP_006091961.1 386595561 12705618 complement(2172788..2173228) 1 NC_017625.1 KEGG: ssn:SSON_1532 hypothetical protein; hypothetical protein 2173228 12705618 EcDH1_2015 Escherichia coli DH1 hypothetical protein YP_006091961.1 2172788 R 536056 CDS YP_006091962.1 386595562 12705619 complement(2173314..2173529) 1 NC_017625.1 PFAM: Haemolysin expression modulating family protein; KEGG: sdy:SDY_1848 OriC-binding nucleoid-associated protein; hemolysin expression modulating family protein 2173529 12705619 EcDH1_2016 Escherichia coli DH1 hemolysin expression modulating family protein YP_006091962.1 2173314 R 536056 CDS YP_006091963.1 386595563 12705620 complement(2173802..2173957) 1 NC_017625.1 KEGG: cko:CKO_01632 hypothetical protein; hypothetical protein 2173957 12705620 EcDH1_2017 Escherichia coli DH1 hypothetical protein YP_006091963.1 2173802 R 536056 CDS YP_006091964.1 386595564 12705621 2174170..2175210 1 NC_017625.1 PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: sbo:SBO_1510 putative oxidoreductase; oxidoreductase domain-containing protein 2175210 12705621 EcDH1_2018 Escherichia coli DH1 oxidoreductase domain-containing protein YP_006091964.1 2174170 D 536056 CDS YP_006091965.1 386595565 12705622 complement(2175244..2176245) 1 NC_017625.1 KEGG: sdy:SDY_1846 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 2176245 12705622 EcDH1_2019 Escherichia coli DH1 adenosine deaminase YP_006091965.1 2175244 R 536056 CDS YP_006091966.1 386595566 12705623 complement(2176349..2177521) 1 NC_017625.1 PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E1810 maltose regulon modulator MalY; class I and II aminotransferase 2177521 12705623 EcDH1_2020 Escherichia coli DH1 class I and II aminotransferase YP_006091966.1 2176349 R 536056 CDS YP_006091967.1 386595567 12705624 complement(2177531..2179123) 1 NC_017625.1 TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, maltose and glucose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: ssn:SSON_1537 bifunctional maltose and glucose-specific PTS system components IICB; PTS system maltose and glucose-specific transporter subunit IIBC 2179123 12705624 EcDH1_2021 Escherichia coli DH1 PTS system maltose and glucose-specific transporter subunit IIBC YP_006091967.1 2177531 R 536056 CDS YP_006091968.1 386595568 12705625 2179298..2180326 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sfx:S1777 DNA-binding transcriptional repressor MalI; LacI family transcriptional regulator 2180326 12705625 EcDH1_2022 Escherichia coli DH1 LacI family transcriptional regulator YP_006091968.1 2179298 D 536056 CDS YP_006091969.1 386595569 12705626 2180438..2181205 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_1838 7-alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase SDR 2181205 12705626 EcDH1_2023 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006091969.1 2180438 D 536056 CDS YP_006091970.1 386595570 12705627 2181438..2182016 1 NC_017625.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_1837 repressor for uid operon; TetR family transcriptional regulator 2182016 12705627 EcDH1_2024 Escherichia coli DH1 TetR family transcriptional regulator YP_006091970.1 2181438 D 536056 CDS YP_006091971.1 386595571 12705628 2182407..2184218 1 NC_017625.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: ssn:SSON_1543 beta-D-glucuronidase; Beta-glucuronidase 2184218 12705628 EcDH1_2025 Escherichia coli DH1 Beta-glucuronidase YP_006091971.1 2182407 D 536056 CDS YP_006091972.1 386595572 12705629 2184215..2185588 1 NC_017625.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1544 glucuronide transporter; sugar (Glycoside-Pentoside-Hexuronide) transporter 2185588 12705629 EcDH1_2026 Escherichia coli DH1 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_006091972.1 2184215 D 536056 CDS YP_006091973.1 386595573 12705630 2185627..2186892 1 NC_017625.1 PFAM: outer membrane porin; KEGG: sbo:SBO_1521 putative outer membrane porin protein; outer membrane porin 2186892 12705630 EcDH1_2027 Escherichia coli DH1 outer membrane porin YP_006091973.1 2185627 D 536056 CDS YP_006091974.1 386595574 12705631 complement(2186953..2187048) 1 NC_017625.1 hypothetical protein 2187048 12705631 EcDH1_2028 Escherichia coli DH1 hypothetical protein YP_006091974.1 2186953 R 536056 CDS YP_006091975.1 386595575 12705632 complement(2187118..2188626) 1 NC_017625.1 PFAM: protein of unknown function DUF945; KEGG: sbc:SbBS512_E1800 hypothetical protein; hypothetical protein 2188626 12705632 EcDH1_2029 Escherichia coli DH1 hypothetical protein YP_006091975.1 2187118 R 536056 CDS YP_006091976.1 386595576 12705633 complement(2188727..2189902) 1 NC_017625.1 KEGG: sfv:SFV_1629 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase 2189902 12705633 EcDH1_2030 Escherichia coli DH1 mannose-6-phosphate isomerase YP_006091976.1 2188727 R 536056 CDS YP_006091977.1 386595577 12705634 2190101..2191747 1 NC_017625.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: sfv:SFV_1628 fumarate hydratase class I, aerobic; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 2191747 12705634 EcDH1_2031 Escherichia coli DH1 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta YP_006091977.1 2190101 D 536056 CDS YP_006091978.1 386595578 12705635 2191890..2193293 1 NC_017625.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; fumarate hydratase class II; KEGG: sbc:SbBS512_E1796 fumarate hydratase; class II fumarate hydratase 2193293 12705635 EcDH1_2032 Escherichia coli DH1 class II fumarate hydratase YP_006091978.1 2191890 D 536056 CDS YP_006091979.1 386595579 12705636 complement(2193290..2194219) 1 NC_017625.1 TIGRFAM: DNA replication terminus site-binding protein; PFAM: site-binding protein DNA replication region; KEGG: ssn:SSON_1550 DNA replication terminus site-binding protein; DNA replication terminus site-binding protein 2194219 12705636 EcDH1_2033 Escherichia coli DH1 DNA replication terminus site-binding protein YP_006091979.1 2193290 R 536056 CDS YP_006091980.1 386595580 12705637 complement(2194295..2195596) 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_1825 sensor protein RstB; histidine kinase 2195596 12705637 EcDH1_2034 Escherichia coli DH1 histidine kinase YP_006091980.1 2194295 R 536056 CDS YP_006091981.1 386595581 12705638 complement(2195600..2196319) 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_1552 DNA-binding response regulator in two-component regulatory system with RstB; winged helix family two component transcriptional regulator 2196319 12705638 EcDH1_2035 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006091981.1 2195600 R 536056 CDS YP_006091982.1 386595582 12705639 2196448..2196783 1 NC_017625.1 PFAM: GlpM family protein; KEGG: sdy:SDY_1546 hypothetical protein; GlpM family protein 2196783 12705639 EcDH1_2036 Escherichia coli DH1 GlpM family protein YP_006091982.1 2196448 D 536056 CDS YP_006091983.1 386595583 12705640 complement(2196780..2197502) 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_1547 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2197502 12705640 EcDH1_2037 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006091983.1 2196780 R 536056 CDS YP_006091984.1 386595584 12705641 complement(2197539..2198921) 1 NC_017625.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: sfv:SFV_1620 putative arginine/ornithine antiporter; arginine/ornithine antiporter 2198921 12705641 EcDH1_2038 Escherichia coli DH1 arginine/ornithine antiporter YP_006091984.1 2197539 R 536056 CDS YP_006091985.1 386595585 12705642 complement(2199107..2200051) 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: sdy:SDY_1549 hypothetical protein; hypothetical protein 2200051 12705642 EcDH1_2039 Escherichia coli DH1 hypothetical protein YP_006091985.1 2199107 R 536056 CDS YP_006091986.1 386595586 12705643 2200575..2202107 1 NC_017625.1 KEGG: ssn:SSON_1557 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha 2202107 12705643 EcDH1_2040 Escherichia coli DH1 NAD(P) transhydrogenase subunit alpha YP_006091986.1 2200575 D 536056 CDS YP_006091987.1 386595587 12705644 2202118..2203506 1 NC_017625.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: sdy:SDY_1551 pyridine nucleotide transhydrogenase; NAD(P)(+) transhydrogenase 2203506 12705644 EcDH1_2041 Escherichia coli DH1 NAD(P)(+) transhydrogenase YP_006091987.1 2202118 D 536056 CDS YP_006091988.1 386595588 12705645 complement(2203531..2204565) 1 NC_017625.1 PFAM: protein of unknown function UPF0118; KEGG: sbc:SbBS512_E1787 putative permease, PerM family; hypothetical protein 2204565 12705645 EcDH1_2042 Escherichia coli DH1 hypothetical protein YP_006091988.1 2203531 R 536056 CDS YP_006091989.1 386595589 12705646 2204977..2205342 1 NC_017625.1 PFAM: small multidrug resistance protein; KEGG: sdy:SDY_1553 multidrug efflux system protein MdtJ; small multidrug resistance protein 2205342 12705646 EcDH1_2043 Escherichia coli DH1 small multidrug resistance protein YP_006091989.1 2204977 D 536056 CDS YP_006091990.1 386595590 12705647 2205329..2205658 1 NC_017625.1 PFAM: small multidrug resistance protein; KEGG: sbc:SbBS512_E1785 multidrug resistance protein MdtI; small multidrug resistance protein 2205658 12705647 EcDH1_2044 Escherichia coli DH1 small multidrug resistance protein YP_006091990.1 2205329 D 536056 CDS YP_006091991.1 386595591 12705648 complement(2205697..2206518) 1 NC_017625.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sfv:SFV_1613 hypothetical protein; peptidase S1 and S6 chymotrypsin/Hap 2206518 12705648 EcDH1_2045 Escherichia coli DH1 peptidase S1 and S6 chymotrypsin/Hap YP_006091991.1 2205697 R 536056 CDS YP_006091992.1 386595592 12705649 complement(2206794..2207102) 1 NC_017625.1 PFAM: Acid shock repeat protein; KEGG: sdy:SDY_1556 acid shock protein precursor; Acid shock repeat protein 2207102 12705649 EcDH1_2046 Escherichia coli DH1 Acid shock repeat protein YP_006091992.1 2206794 R 536056 CDS YP_006091993.1 386595593 12705650 complement(2207526..2208779) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1568 putative transport protein; major facilitator superfamily protein 2208779 12705650 EcDH1_2047 Escherichia coli DH1 major facilitator superfamily protein YP_006091993.1 2207526 R 536056 CDS YP_006091994.1 386595594 12705651 2208886..2209779 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_1569 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2209779 12705651 EcDH1_2048 Escherichia coli DH1 LysR family transcriptional regulator YP_006091994.1 2208886 D 536056 CDS YP_006091995.1 386595595 12705652 2209914..2211134 1 NC_017625.1 PFAM: ROK family protein; KEGG: sbc:SbBS512_E1780 transcriptional regulator Mic; ROK family protein 2211134 12705652 EcDH1_2049 Escherichia coli DH1 ROK family protein YP_006091995.1 2209914 D 536056 CDS YP_006091996.1 386595596 12705653 2211259..2211954 1 NC_017625.1 KEGG: sbc:SbBS512_E1778 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase 2211954 12705653 EcDH1_2050 Escherichia coli DH1 dethiobiotin synthase YP_006091996.1 2211259 D 536056 CDS YP_006091997.1 386595597 12705654 complement(2211907..2213163) 1 NC_017625.1 PFAM: Chloride channel core; KEGG: sbo:SBO_1544 putative voltage-gated ClC-type chloride channel ClcB; chloride channel protein 2213163 12705654 EcDH1_2051 Escherichia coli DH1 chloride channel protein YP_006091997.1 2211907 R 536056 CDS YP_006091998.1 386595598 12705655 complement(2213358..2213972) 1 NC_017625.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: ssn:SSON_1573 twin-argninine leader-binding protein DmsD; cytoplasmic chaperone TorD family protein 2213972 12705655 EcDH1_2052 Escherichia coli DH1 cytoplasmic chaperone TorD family protein YP_006091998.1 2213358 R 536056 CDS YP_006091999.1 386595599 12705656 complement(2214015..2214869) 1 NC_017625.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: sbo:SBO_1546 putative DMSO reductase anchor subunit; DMSO reductase anchor subunit DmsC 2214869 12705656 EcDH1_2053 Escherichia coli DH1 DMSO reductase anchor subunit DmsC YP_006091999.1 2214015 R 536056 CDS YP_006092000.1 386595600 12705657 complement(2214871..2215488) 1 NC_017625.1 TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sdy:SDY_1567 putative oxidoreductase, Fe-S subunit; dimethylsulfoxide reductase subunit B 2215488 12705657 EcDH1_2054 Escherichia coli DH1 dimethylsulfoxide reductase subunit B YP_006092000.1 2214871 R 536056 CDS YP_006092001.1 386595601 12705658 complement(2215499..2217895) 1 NC_017625.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sbo:SBO_1548 putative oxidoreductase, major subunit; anaerobic dimethyl sulfoxide reductase subunit A 2217895 12705658 EcDH1_2055 Escherichia coli DH1 anaerobic dimethyl sulfoxide reductase subunit A YP_006092001.1 2215499 R 536056 CDS YP_006092002.1 386595602 12705659 complement(2217983..2220409) 1 NC_017625.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sbc:SbBS512_E1773 anaerobic dimethyl sulfoxide reductase, A subunit YnfE; anaerobic dimethyl sulfoxide reductase subunit A 2220409 12705659 EcDH1_2056 Escherichia coli DH1 anaerobic dimethyl sulfoxide reductase subunit A YP_006092002.1 2217983 R 536056 CDS YP_006092003.1 386595603 12705660 complement(2220608..2220913) 1 NC_017625.1 PFAM: protein of unknown function DUF1161; KEGG: sfv:SFV_1558 hypothetical protein; hypothetical protein 2220913 12705660 EcDH1_2057 Escherichia coli DH1 hypothetical protein YP_006092003.1 2220608 R 536056 CDS YP_006092004.1 386595604 12705661 2220985..2221731 1 NC_017625.1 PFAM: protein of unknown function UPF0257; KEGG: sbc:SbBS512_E1771 hypothetical protein; hypothetical protein 2221731 12705661 EcDH1_2058 Escherichia coli DH1 hypothetical protein YP_006092004.1 2220985 D 536056 CDS YP_006092005.1 386595605 12705662 complement(2221734..2222294) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cko:CKO_01578 hypothetical protein; N-acetyltransferase GCN5 2222294 12705662 EcDH1_2059 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006092005.1 2221734 R 536056 CDS YP_006092006.1 386595606 12705663 complement(2222329..2222670) 1 NC_017625.1 PFAM: protein of unknown function DUF1283; KEGG: sfv:SFV_1561 hypothetical protein; hypothetical protein 2222670 12705663 EcDH1_2060 Escherichia coli DH1 hypothetical protein YP_006092006.1 2222329 R 536056 CDS YP_006092007.1 386595607 12705664 2222805..2223131 1 NC_017625.1 PFAM: protein of unknown function UPF0060; KEGG: sdy:SDY_1577 hypothetical protein; hypothetical protein 2223131 12705664 EcDH1_2061 Escherichia coli DH1 hypothetical protein YP_006092007.1 2222805 D 536056 CDS YP_006092008.1 386595608 12705665 2223337..2224551 1 NC_017625.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sfx:S1718 starvation sensing protein; mandelate racemase/muconate lactonizing protein 2224551 12705665 EcDH1_2062 Escherichia coli DH1 mandelate racemase/muconate lactonizing protein YP_006092008.1 2223337 D 536056 CDS YP_006092009.1 386595609 12705666 2224563..2225582 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cko:CKO_01574 putative dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 2225582 12705666 EcDH1_2063 Escherichia coli DH1 alcohol dehydrogenase GroES domain-containing protein YP_006092009.1 2224563 D 536056 CDS YP_006092010.1 386595610 12705667 complement(2225770..2226966) 1 NC_017625.1 PFAM: integrase family protein; KEGG: stm:STM0893 putative integrase; integrase family protein 2226966 12705667 EcDH1_2064 Escherichia coli DH1 integrase family protein YP_006092010.1 2225770 R 536056 CDS YP_006092011.1 386595611 12705668 complement(2226941..2227597) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 2227597 12705668 EcDH1_2065 Escherichia coli DH1 integrase catalytic subunit YP_006092011.1 2226941 R 536056 CDS YP_006092012.1 386595612 12705670 complement(2228493..2228684) 1 NC_017625.1 PFAM: protein of unknown function DUF1482; KEGG: cko:CKO_01911 hypothetical protein; hypothetical protein 2228684 12705670 EcDH1_2067 Escherichia coli DH1 hypothetical protein YP_006092012.1 2228493 R 536056 CDS YP_006092013.1 386595613 12705671 complement(2228681..2228869) 1 NC_017625.1 PFAM: DicB family protein; DicB family protein 2228869 12705671 EcDH1_2068 Escherichia coli DH1 DicB family protein YP_006092013.1 2228681 R 536056 CDS YP_006092014.1 386595614 12705672 2229269..2229433 1 NC_017625.1 hypothetical protein 2229433 12705672 EcDH1_2069 Escherichia coli DH1 hypothetical protein YP_006092014.1 2229269 D 536056 CDS YP_006092015.1 386595615 12705673 complement(2229437..2229655) 1 NC_017625.1 hypothetical protein 2229655 12705673 EcDH1_2070 Escherichia coli DH1 hypothetical protein YP_006092015.1 2229437 R 536056 CDS YP_006092016.1 386595616 12705674 complement(2229685..2229813) 1 NC_017625.1 KEGG: ent:Ent638_0779 hypothetical protein; hypothetical protein 2229813 12705674 EcDH1_2071 Escherichia coli DH1 hypothetical protein YP_006092016.1 2229685 R 536056 CDS YP_006092017.1 386595617 12705675 complement(2229815..2229970) 1 NC_017625.1 PFAM: protein of unknown function DUF1391; KEGG: ssn:SSON_0728 hypothetical protein; hypothetical protein 2229970 12705675 EcDH1_2072 Escherichia coli DH1 hypothetical protein YP_006092017.1 2229815 R 536056 CDS YP_006092018.1 386595618 12705676 complement(2230137..2230544) 1 NC_017625.1 PFAM: helix-turn-helix domain protein; KEGG: sfl:SF0876 transcriptional repressor DicA; XRE family transcriptional regulator 2230544 12705676 EcDH1_2073 Escherichia coli DH1 XRE family transcriptional regulator YP_006092018.1 2230137 R 536056 CDS YP_006092019.1 386595619 12705677 2230628..2230858 1 NC_017625.1 KEGG: sfv:SFV_0741 DNA-binding transcriptional regulator DicC; DNA-binding transcriptional regulator DicC 2230858 12705677 EcDH1_2074 Escherichia coli DH1 DNA-binding transcriptional regulator DicC YP_006092019.1 2230628 D 536056 CDS YP_006092020.1 386595620 12705678 2230842..2231132 1 NC_017625.1 KEGG: spq:SPAB_02261 hypothetical protein; hypothetical protein 2231132 12705678 EcDH1_2075 Escherichia coli DH1 hypothetical protein YP_006092020.1 2230842 D 536056 CDS YP_006092021.1 386595621 12705679 2231129..2231356 1 NC_017625.1 hypothetical protein 2231356 12705679 EcDH1_2076 Escherichia coli DH1 hypothetical protein YP_006092021.1 2231129 D 536056 CDS YP_006092022.1 386595622 12705680 complement(2231741..2232073) 1 NC_017625.1 KEGG: ent:Ent638_2935 hypothetical protein; hypothetical protein 2232073 12705680 EcDH1_2077 Escherichia coli DH1 hypothetical protein YP_006092022.1 2231741 R 536056 CDS YP_006092023.1 386595623 12705681 2232606..2232845 1 NC_017625.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: ent:Ent638_4262 bifunctional antitoxin/transcriptional repressor RelB; RelB/DinJ family addiction module antitoxin 2232845 12705681 EcDH1_2078 Escherichia coli DH1 RelB/DinJ family addiction module antitoxin YP_006092023.1 2232606 D 536056 CDS YP_006092024.1 386595624 12705682 2232845..2233132 1 NC_017625.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: sfx:S1669 hypothetical protein; RelE/StbE family addiction module toxin 2233132 12705682 EcDH1_2079 Escherichia coli DH1 RelE/StbE family addiction module toxin YP_006092024.1 2232845 D 536056 CDS YP_006092025.1 386595625 12705683 2233204..2233359 1 NC_017625.1 PFAM: Hok/gef cell toxic protein; KEGG: sdy:SDY_1432 polypeptide destructive to membrane potential; Hok/gef cell toxic protein 2233359 12705683 EcDH1_2080 Escherichia coli DH1 Hok/gef cell toxic protein YP_006092025.1 2233204 D 536056 CDS YP_006092026.1 386595626 12705684 2233576..2233827 1 NC_017625.1 KEGG: sdy:SDY_1433 hypothetical protein; hypothetical protein 2233827 12705684 EcDH1_2081 Escherichia coli DH1 hypothetical protein YP_006092026.1 2233576 D 536056 CDS YP_006092027.1 386595627 12705685 2233894..2234172 1 NC_017625.1 KEGG: sfl:SF2042 hypothetical protein; hypothetical protein 2234172 12705685 EcDH1_2082 Escherichia coli DH1 hypothetical protein YP_006092027.1 2233894 D 536056 CDS YP_006092028.1 386595628 12705686 2234174..2235223 1 NC_017625.1 PFAM: protein of unknown function DUF1277; SMART: HNH nuclease; KEGG: sfl:SF1546 hypothetical protein; hypothetical protein 2235223 12705686 EcDH1_2083 Escherichia coli DH1 hypothetical protein YP_006092028.1 2234174 D 536056 CDS YP_006092029.1 386595629 12705687 2235237..2235989 1 NC_017625.1 PFAM: antitermination protein; KEGG: sew:SeSA_A4452 antitermination protein; antitermination protein 2235989 12705687 EcDH1_2084 Escherichia coli DH1 antitermination protein YP_006092029.1 2235237 D 536056 CDS YP_006092030.1 386595630 12705688 complement(2236411..2236623) 1 NC_017625.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sek:SSPA1487 putative cold shock protein; cold-shock protein 2236623 12705688 EcDH1_2085 Escherichia coli DH1 cold-shock protein YP_006092030.1 2236411 R 536056 CDS YP_006092031.1 386595631 12705689 2236924..2237139 1 NC_017625.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ent:Ent638_0166 major cold shock protein; cold-shock protein 2237139 12705689 EcDH1_2086 Escherichia coli DH1 cold-shock protein YP_006092031.1 2236924 D 536056 CDS YP_006092032.1 386595632 12705690 complement(2237741..2237860) 1 NC_017625.1 hypothetical protein 2237860 12705690 EcDH1_2087 Escherichia coli DH1 hypothetical protein YP_006092032.1 2237741 R 536056 CDS YP_006092033.1 386595633 12705691 2237902..2238108 1 NC_017625.1 PFAM: Lysis S family protein; KEGG: esa:ESA_01624 hypothetical protein; Lysis S family protein 2238108 12705691 EcDH1_2088 Escherichia coli DH1 Lysis S family protein YP_006092033.1 2237902 D 536056 CDS YP_006092034.1 386595634 12705692 2238113..2238424 1 NC_017625.1 PFAM: protein of unknown function DUF1327; KEGG: sbc:SbBS512_E1449 hypothetical protein; hypothetical protein 2238424 12705692 EcDH1_2089 Escherichia coli DH1 hypothetical protein YP_006092034.1 2238113 D 536056 CDS YP_006092035.1 386595635 12705693 2238421..2238954 1 NC_017625.1 PFAM: glycoside hydrolase family 24; KEGG: sbc:SbBS512_E1450 phage lysozyme; lysozyme 2238954 12705693 EcDH1_2090 Escherichia coli DH1 lysozyme YP_006092035.1 2238421 D 536056 CDS YP_006092036.1 386595636 12705694 2238951..2239448 1 NC_017625.1 KEGG: sew:SeSA_A0687 protein GP55; protein GP55 2239448 12705694 EcDH1_2091 Escherichia coli DH1 protein GP55 YP_006092036.1 2238951 D 536056 CDS YP_006092037.1 386595637 12705695 2239811..2240023 1 NC_017625.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ses:SARI_00934 hypothetical protein; cold-shock protein 2240023 12705695 EcDH1_2092 Escherichia coli DH1 cold-shock protein YP_006092037.1 2239811 D 536056 CDS YP_006092038.1 386595638 12705697 2240369..2240524 1 NC_017625.1 KEGG: kpe:KPK_4952 hypothetical protein; hypothetical protein 2240524 12705697 EcDH1_2094 Escherichia coli DH1 hypothetical protein YP_006092038.1 2240369 D 536056 CDS YP_006092039.1 386595639 12705698 2240696..2240869 1 NC_017625.1 PFAM: GnsAGnsB family protein; KEGG: sbc:SbBS512_E2323 transcriptional regulator, GnsA/GnsB family; GnsAGnsB family protein 2240869 12705698 EcDH1_2095 Escherichia coli DH1 GnsAGnsB family protein YP_006092039.1 2240696 D 536056 CDS YP_006092040.1 386595640 12705699 complement(2241021..2241431) 1 NC_017625.1 PFAM: protein of unknown function DUF1398; KEGG: ssn:SSON_2432 hypothetical protein; hypothetical protein 2241431 12705699 EcDH1_2096 Escherichia coli DH1 hypothetical protein YP_006092040.1 2241021 R 536056 CDS YP_006092041.1 386595641 12705700 2242111..2242680 1 NC_017625.1 PFAM: DNA packaging Nu1; KEGG: ssn:SSON_2431 bacteriophage DNA packaging protein; DNA packaging Nu1 2242680 12705700 EcDH1_2097 Escherichia coli DH1 DNA packaging Nu1 YP_006092041.1 2242111 D 536056 CDS YP_006092042.1 386595642 12705701 2242631..2243593 1 NC_017625.1 PFAM: tail fiber repeat containing protein; Tail Collar domain protein; KEGG: ssn:SSON_2410 phage protein-related; Tail Collar domain-containing protein 2243593 12705701 EcDH1_2098 Escherichia coli DH1 Tail Collar domain-containing protein YP_006092042.1 2242631 D 536056 CDS YP_006092043.1 386595643 12705702 2243593..2244168 1 NC_017625.1 PFAM: tail assembly chaperone gp38; KEGG: sbc:SbBS512_E1479 tail fiber assembly protein; tail assembly chaperone gp38 2244168 12705702 EcDH1_2099 Escherichia coli DH1 tail assembly chaperone gp38 YP_006092043.1 2243593 D 536056 CDS YP_006092044.1 386595644 12705703 complement(2244266..2244856) 1 NC_017625.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: sbl:Sbal_4419 resolvase domain-containing protein; Resolvase domain-containing protein 2244856 12705703 EcDH1_2100 Escherichia coli DH1 Resolvase domain-containing protein YP_006092044.1 2244266 R 536056 CDS YP_006092045.1 386595645 12705704 complement(2245173..2245439) 1 NC_017625.1 KEGG: ent:Ent638_2496 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 2245439 12705704 EcDH1_2101 Escherichia coli DH1 DNA-binding transcriptional regulator YP_006092045.1 2245173 R 536056 CDS YP_006092046.1 386595646 12705705 2246193..2247476 1 NC_017625.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_1582 putative transport protein; metabolite/H+ symporter, major facilitator superfamily (MFS) 2247476 12705705 EcDH1_2102 Escherichia coli DH1 metabolite/H+ symporter, major facilitator superfamily (MFS) YP_006092046.1 2246193 D 536056 CDS YP_006092047.1 386595647 12705706 2247565..2249025 1 NC_017625.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfx:S1678 putative oxidoreductase; mannitol dehydrogenase domain-containing protein 2249025 12705706 EcDH1_2103 Escherichia coli DH1 mannitol dehydrogenase domain-containing protein YP_006092047.1 2247565 D 536056 CDS YP_006092048.1 386595648 12705707 complement(2249060..2249263) 1 NC_017625.1 TIGRFAM: selenium-binding protein YdfZ; KEGG: sdy:SDY_1584 hypothetical protein; selenium-binding protein YdfZ 2249263 12705707 EcDH1_2104 Escherichia coli DH1 selenium-binding protein YdfZ YP_006092048.1 2249060 R 536056 CDS YP_006092049.1 386595649 12705708 complement(2249440..2250126) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ssn:SSON_1588 hypothetical protein; GntR family transcriptional regulator 2250126 12705708 EcDH1_2105 Escherichia coli DH1 GntR family transcriptional regulator YP_006092049.1 2249440 R 536056 CDS YP_006092050.1 386595650 12705709 complement(2250215..2250961) 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbo:SBO_1613 L-allo-threonine dehydrogenase, NAD(P)-binding; short-chain dehydrogenase/reductase SDR 2250961 12705709 EcDH1_2106 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006092050.1 2250215 R 536056 CDS YP_006092051.1 386595651 12705710 2251098..2253143 1 NC_017625.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sbo:SBO_1612 dipeptidyl carboxypeptidase II; peptidyl-dipeptidase Dcp 2253143 12705710 EcDH1_2107 Escherichia coli DH1 peptidyl-dipeptidase Dcp YP_006092051.1 2251098 D 536056 CDS YP_006092052.1 386595652 12705711 complement(2253187..2253705) 1 NC_017625.1 PFAM: CinA domain protein; KEGG: sdy:SDY_1588 competence damage-inducible protein A; CinA domain-containing protein 2253705 12705711 EcDH1_2108 Escherichia coli DH1 CinA domain-containing protein YP_006092052.1 2253187 R 536056 CDS YP_006092053.1 386595653 12705712 2253981..2254373 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sdy:SDY_1589 hypothetical protein; hypothetical protein 2254373 12705712 EcDH1_2109 Escherichia coli DH1 hypothetical protein YP_006092053.1 2253981 D 536056 CDS YP_006092054.1 386595654 12705713 2254628..2255518 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1593 hypothetical protein; diguanylate cyclase 2255518 12705713 EcDH1_2110 Escherichia coli DH1 diguanylate cyclase YP_006092054.1 2254628 D 536056 CDS YP_006092055.1 386595655 12705714 complement(2255737..2255832) 1 NC_017625.1 KEGG: sed:SeD_A1821 hypothetical protein; hypothetical protein 2255832 12705714 EcDH1_2111 Escherichia coli DH1 hypothetical protein YP_006092055.1 2255737 R 536056 CDS YP_006092056.1 386595656 12705715 complement(2255959..2257146) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_1593 putative MFS-type transporter YdeE; major facilitator superfamily protein 2257146 12705715 EcDH1_2112 Escherichia coli DH1 major facilitator superfamily protein YP_006092056.1 2255959 R 536056 CDS YP_006092057.1 386595657 12705716 2257341..2258240 1 NC_017625.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: sfv:SFV_1593 O-acetylserine/cysteine export protein; hypothetical protein 2258240 12705716 EcDH1_2113 Escherichia coli DH1 hypothetical protein YP_006092057.1 2257341 D 536056 CDS YP_006092058.1 386595658 12705717 complement(2258271..2258489) 1 NC_017625.1 KEGG: sbo:SBO_1650 hypothetical protein; hypothetical protein 2258489 12705717 EcDH1_2114 Escherichia coli DH1 hypothetical protein YP_006092058.1 2258271 R 536056 CDS YP_006092059.1 386595659 12705718 complement(2258521..2258904) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E1674 multiple antibiotic resistance protein MarA; AraC family transcriptional regulator 2258904 12705718 EcDH1_2115 Escherichia coli DH1 AraC family transcriptional regulator YP_006092059.1 2258521 R 536056 CDS YP_006092060.1 386595660 12705719 complement(2258924..2259358) 1 NC_017625.1 PFAM: regulatory protein MarR; KEGG: sdy:SDY_1597 DNA-binding transcriptional repressor MarR; MarR family transcriptional regulator 2259358 12705719 EcDH1_2116 Escherichia coli DH1 MarR family transcriptional regulator YP_006092060.1 2258924 R 536056 CDS YP_006092061.1 386595661 12705720 2259570..2260235 1 NC_017625.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: sdy:SDY_1598 multiple drug resistance protein MarC; multiple antibiotic resistance (MarC)-like protein 2260235 12705720 EcDH1_2117 Escherichia coli DH1 multiple antibiotic resistance (MarC)-like protein YP_006092061.1 2259570 D 536056 CDS YP_006092062.1 386595662 12705721 complement(2260260..2261450) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1646 sugar efflux transporter; major facilitator superfamily protein 2261450 12705721 EcDH1_2118 Escherichia coli DH1 major facilitator superfamily protein YP_006092062.1 2260260 R 536056 CDS YP_006092063.1 386595663 12705722 complement(2261600..2262715) 1 NC_017625.1 KEGG: ssn:SSON_1601 hypothetical protein; hypothetical protein 2262715 12705722 EcDH1_2119 Escherichia coli DH1 hypothetical protein YP_006092063.1 2261600 R 536056 CDS YP_006092064.1 386595664 12705723 complement(2262793..2263674) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_1633 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2263674 12705723 EcDH1_2120 Escherichia coli DH1 LysR family transcriptional regulator YP_006092064.1 2262793 R 536056 CDS YP_006092065.1 386595665 12705724 2263775..2265163 1 NC_017625.1 PFAM: Aldehyde Dehydrogenase; KEGG: sbc:SbBS512_E1681 aldehyde dehydrogenase (NAD) family protein; aldehyde dehydrogenase 2265163 12705724 EcDH1_2121 Escherichia coli DH1 aldehyde dehydrogenase YP_006092065.1 2263775 D 536056 CDS YP_006092066.1 386595666 12705725 2265227..2266153 1 NC_017625.1 PFAM: Glutaminase, core; KEGG: sbc:SbBS512_E1682 glutaminase; Glutaminase 2266153 12705725 EcDH1_2122 Escherichia coli DH1 Glutaminase YP_006092066.1 2265227 D 536056 CDS YP_006092067.1 386595667 12705726 2266153..2266512 1 NC_017625.1 KEGG: sbc:SbBS512_E1683 hypothetical protein; hypothetical protein 2266512 12705726 EcDH1_2123 Escherichia coli DH1 hypothetical protein YP_006092067.1 2266153 D 536056 CDS YP_006092068.1 386595668 12705727 2266624..2267571 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbo:SBO_1640 hypothetical protein; diguanylate cyclase 2267571 12705727 EcDH1_2124 Escherichia coli DH1 diguanylate cyclase YP_006092068.1 2266624 D 536056 CDS YP_006092069.1 386595669 12705728 2267798..2269249 1 NC_017625.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfx:S1699 altronate oxidoreductase; mannitol dehydrogenase domain-containing protein 2269249 12705728 EcDH1_2125 Escherichia coli DH1 mannitol dehydrogenase domain-containing protein YP_006092069.1 2267798 D 536056 CDS YP_006092070.1 386595670 12705729 2269456..2270370 1 NC_017625.1 PFAM: protein of unknown function UPF0187; KEGG: sfv:SFV_1577 hypothetical protein; hypothetical protein 2270370 12705729 EcDH1_2126 Escherichia coli DH1 hypothetical protein YP_006092070.1 2269456 D 536056 CDS YP_006092071.1 386595671 12705730 complement(2270374..2271132) 1 NC_017625.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sfx:S1702 trans-aconitate 2-methyltransferase; Trans-aconitate 2-methyltransferase 2271132 12705730 EcDH1_2127 Escherichia coli DH1 Trans-aconitate 2-methyltransferase YP_006092071.1 2270374 R 536056 CDS YP_006092072.1 386595672 12705731 complement(2271189..2271479) 1 NC_017625.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sdy:SDY_1624 autoinducer-2 (AI-2) modifying protein LsrG; antibiotic biosynthesis monooxygenase 2271479 12705731 EcDH1_2128 Escherichia coli DH1 antibiotic biosynthesis monooxygenase YP_006092072.1 2271189 R 536056 CDS YP_006092073.1 386595673 12705732 complement(2271503..2272378) 1 NC_017625.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: stm:STM4078 aldolase; Fructose-bisphosphate aldolase 2272378 12705732 EcDH1_2129 Escherichia coli DH1 Fructose-bisphosphate aldolase YP_006092073.1 2271503 R 536056 CDS YP_006092074.1 386595674 12705733 complement(2272405..2273427) 1 NC_017625.1 KEGG: stm:STM4077 putative sugar transport protein; putative sugar transport protein 2273427 12705733 EcDH1_2130 Escherichia coli DH1 putative sugar transport protein YP_006092074.1 2272405 R 536056 CDS YP_006092075.1 386595675 12705734 complement(2273439..2274431) 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: sfv:SFV_1570 putative transport system permease protein; monosaccharide-transporting ATPase 2274431 12705734 EcDH1_2131 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006092075.1 2273439 R 536056 CDS YP_006092076.1 386595676 12705735 complement(2274431..2275459) 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: sfv:SFV_1569 putative transport system permease protein; monosaccharide-transporting ATPase 2275459 12705735 EcDH1_2132 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006092076.1 2274431 R 536056 CDS YP_006092077.1 386595677 12705736 complement(2275453..2276988) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfv:SFV_1568 putative ATP-binding component of a transport system; ABC transporter 2276988 12705736 EcDH1_2133 Escherichia coli DH1 ABC transporter YP_006092077.1 2275453 R 536056 CDS YP_006092078.1 386595678 12705737 2277237..2278190 1 NC_017625.1 PFAM: putative sugar-binding domain protein; KEGG: sfv:SFV_1567 putative SorC family transcriptional regulator; DeoR family transcriptional regulator 2278190 12705737 EcDH1_2134 Escherichia coli DH1 DeoR family transcriptional regulator YP_006092078.1 2277237 D 536056 CDS YP_006092079.1 386595679 12705738 2278269..2279861 1 NC_017625.1 PFAM: carbohydrate kinase FGGY; KEGG: spq:SPAB_05045 autoinducer-2 (AI-2) kinase; carbohydrate kinase FGGY 2279861 12705738 EcDH1_2135 Escherichia coli DH1 carbohydrate kinase FGGY YP_006092079.1 2278269 D 536056 CDS YP_006092080.1 386595680 12705740 2285841..2285939 1 NC_017625.1 hypothetical protein 2285939 12705740 EcDH1_2137 Escherichia coli DH1 hypothetical protein YP_006092080.1 2285841 D 536056 CDS YP_006092081.1 386595681 12705741 2286036..2286302 1 NC_017625.1 PFAM: helix-turn-helix domain protein; KEGG: ssn:SSON_1613 DNA-binding transcriptional regulator; XRE family transcriptional regulator 2286302 12705741 EcDH1_2138 Escherichia coli DH1 XRE family transcriptional regulator YP_006092081.1 2286036 D 536056 CDS YP_006092082.1 386595682 12705742 2286302..2287624 1 NC_017625.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: kpn:KPN_01668 persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator; HipA N-terminal domain-containing protein 2287624 12705742 EcDH1_2139 Escherichia coli DH1 HipA N-terminal domain-containing protein YP_006092082.1 2286302 D 536056 CDS YP_006092083.1 386595683 12705744 2288477..2289625 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: cko:CKO_03711 hypothetical protein; fimbrial biogenesis outer membrane usher protein 2289625 12705744 EcDH1_2141 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006092083.1 2288477 D 536056 CDS YP_006092084.1 386595684 12705745 2289639..2290169 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: kpe:KPK_0813 fimbrial protein FimF; Fimbrial protein 2290169 12705745 EcDH1_2142 Escherichia coli DH1 Fimbrial protein YP_006092084.1 2289639 D 536056 CDS YP_006092085.1 386595685 12705746 2290182..2290685 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sbo:SBO_4369 fimbrial morphology; Fimbrial protein 2290685 12705746 EcDH1_2143 Escherichia coli DH1 Fimbrial protein YP_006092085.1 2290182 D 536056 CDS YP_006092086.1 386595686 12705747 2290744..2291658 1 NC_017625.1 PFAM: Fimbrial protein; FimH mannose-binding domain protein; KEGG: ssn:SSON_1621 putative adhesin; FimH mannose-binding domain protein 2291658 12705747 EcDH1_2144 Escherichia coli DH1 FimH mannose-binding domain protein YP_006092086.1 2290744 D 536056 CDS YP_006092087.1 386595687 12705748 2291992..2294271 1 NC_017625.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sbc:SbBS512_E1763 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit 2294271 12705748 EcDH1_2145 Escherichia coli DH1 oxidoreductase alpha (molybdopterin) subunit YP_006092087.1 2291992 D 536056 CDS YP_006092088.1 386595688 12705749 2294519..2294716 1 NC_017625.1 KEGG: sfx:S1655 hypothetical protein; hypothetical protein 2294716 12705749 EcDH1_2146 Escherichia coli DH1 hypothetical protein YP_006092088.1 2294519 D 536056 CDS YP_006092089.1 386595689 12705750 2294791..2295552 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E1762 transcriptional regulator, AraC family; AraC family transcriptional regulator 2295552 12705750 EcDH1_2147 Escherichia coli DH1 AraC family transcriptional regulator YP_006092089.1 2294791 D 536056 CDS YP_006092090.1 386595690 12705751 2295954..2297636 1 NC_017625.1 PFAM: sulfatase; KEGG: sbo:SBO_1558 putative sulfatase; sulfatase 2297636 12705751 EcDH1_2148 Escherichia coli DH1 sulfatase YP_006092090.1 2295954 D 536056 CDS YP_006092091.1 386595691 12705752 2297688..2298845 1 NC_017625.1 PFAM: Radical SAM domain protein; KEGG: sfv:SFV_1723 putative enzyme; radical SAM protein 2298845 12705752 EcDH1_2149 Escherichia coli DH1 radical SAM protein YP_006092091.1 2297688 D 536056 CDS YP_006092092.1 386595692 12705753 2299136..2300821 1 NC_017625.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: ssn:SSON_1627 putative ATP-binding component of a transport system; ABC transporter 2300821 12705753 EcDH1_2150 Escherichia coli DH1 ABC transporter YP_006092092.1 2299136 D 536056 CDS YP_006092093.1 386595693 12705754 2300859..2303231 1 NC_017625.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ssn:SSON_1629 hypothetical protein; TonB-dependent receptor plug 2303231 12705754 EcDH1_2151 Escherichia coli DH1 TonB-dependent receptor plug YP_006092093.1 2300859 D 536056 CDS YP_006092094.1 386595694 12705755 2303288..2306071 1 NC_017625.1 PFAM: peptidase M16 domain protein; KEGG: sbo:SBO_1562 putative peptidase; peptidase M16 domain-containing protein 2306071 12705755 EcDH1_2152 Escherichia coli DH1 peptidase M16 domain-containing protein YP_006092094.1 2303288 D 536056 CDS YP_006092095.1 386595695 12705756 2306433..2307833 1 NC_017625.1 TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: sbo:SBO_1563 glutamate decarboxylase isozyme; glutamate decarboxylase 2307833 12705756 EcDH1_2153 Escherichia coli DH1 glutamate decarboxylase YP_006092095.1 2306433 D 536056 CDS YP_006092096.1 386595696 12705758 2307989..2309524 1 NC_017625.1 TIGRFAM: glutamate/g-aminobutyrate antiporter; PFAM: amino acid permease-associated region; KEGG: sbc:SbBS512_E1755 glutamate:gamma aminobutyrate antiporter; glutamate/g-aminobutyrate antiporter 2309524 12705758 EcDH1_2155 Escherichia coli DH1 glutamate/g-aminobutyrate antiporter YP_006092096.1 2307989 D 536056 CDS YP_006092097.1 386595697 12705759 2309655..2310974 1 NC_017625.1 PFAM: protein of unknown function DUF187; KEGG: sfv:SFV_1732 hypothetical protein; hypothetical protein 2310974 12705759 EcDH1_2156 Escherichia coli DH1 hypothetical protein YP_006092097.1 2309655 D 536056 CDS YP_006092098.1 386595698 12705760 2311338..2312720 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1634 hypothetical protein; diguanylate cyclase 2312720 12705760 EcDH1_2157 Escherichia coli DH1 diguanylate cyclase YP_006092098.1 2311338 D 536056 CDS YP_006092099.1 386595699 12705761 2312745..2315144 1 NC_017625.1 KEGG: ssn:SSON_1635 cAMP phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2315144 12705761 EcDH1_2158 Escherichia coli DH1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_006092099.1 2312745 D 536056 CDS YP_006092100.1 386595700 12705762 2315402..2315983 1 NC_017625.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: ssn:SSON_1636 D-alanyl-D-alanine dipeptidase; peptidase M15D vanX D-ala-D-ala dipeptidase 2315983 12705762 EcDH1_2159 Escherichia coli DH1 peptidase M15D vanX D-ala-D-ala dipeptidase YP_006092100.1 2315402 D 536056 CDS YP_006092101.1 386595701 12705763 2315997..2317547 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_1637 putative hemin-binding lipoprotein; family 5 extracellular solute-binding protein 2317547 12705763 EcDH1_2160 Escherichia coli DH1 family 5 extracellular solute-binding protein YP_006092101.1 2315997 D 536056 CDS YP_006092102.1 386595702 12705764 2317549..2318571 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1571 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 2318571 12705764 EcDH1_2161 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092102.1 2317549 D 536056 CDS YP_006092103.1 386595703 12705765 2318568..2319464 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1639 ATP-dependent peptide transporter membrane subunit; binding-protein-dependent transport system inner membrane protein 2319464 12705765 EcDH1_2162 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092103.1 2318568 D 536056 CDS YP_006092104.1 386595704 12705766 2319461..2320447 1 NC_017625.1 KEGG: sbc:SbBS512_E1747 ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2320447 12705766 EcDH1_2163 Escherichia coli DH1 oligopeptide/dipeptide ABC transporter ATPase YP_006092104.1 2319461 D 536056 CDS YP_006092105.1 386595705 12705767 2320440..2321366 1 NC_017625.1 KEGG: sbo:SBO_1574 putative ATP-binding component of a transport system; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2321366 12705767 EcDH1_2164 Escherichia coli DH1 oligopeptide/dipeptide ABC transporter ATPase YP_006092105.1 2320440 D 536056 CDS YP_006092106.1 386595706 12705768 complement(2321422..2321853) 1 NC_017625.1 PFAM: OsmC family protein; KEGG: sfv:SFV_1739 osmotically inducible protein; OsmC family protein 2321853 12705768 EcDH1_2165 Escherichia coli DH1 OsmC family protein YP_006092106.1 2321422 R 536056 CDS YP_006092107.1 386595707 12705769 2322198..2322413 1 NC_017625.1 KEGG: sbc:SbBS512_E1744 protein bdm; protein bdm 2322413 12705769 EcDH1_2166 Escherichia coli DH1 protein bdm YP_006092107.1 2322198 D 536056 CDS YP_006092108.1 386595708 12705770 2322515..2322652 1 NC_017625.1 PFAM: 30S ribosomal subunit S22; KEGG: sbc:SbBS512_E1743 30S ribosomal protein, S22 family; 30S ribosomal subunit S22 2322652 12705770 EcDH1_2167 Escherichia coli DH1 30S ribosomal subunit S22 YP_006092108.1 2322515 D 536056 CDS YP_006092109.1 386595709 12705771 2322809..2324506 1 NC_017625.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: sfv:SFV_1742 malate dehydrogenase; Malate dehydrogenase (oxaloacetate-decarboxylating) 2324506 12705771 EcDH1_2168 Escherichia coli DH1 Malate dehydrogenase (oxaloacetate-decarboxylating) YP_006092109.1 2322809 D 536056 CDS YP_006092110.1 386595710 12705772 2324640..2325650 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfx:S1880 alcohol dehydrogenase; alcohol dehydrogenase 2325650 12705772 EcDH1_2169 Escherichia coli DH1 alcohol dehydrogenase YP_006092110.1 2324640 D 536056 CDS YP_006092111.1 386595711 12705773 2325796..2326080 1 NC_017625.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E1740 addiction module antidote protein, HigA family; plasmid maintenance system antidote protein 2326080 12705773 EcDH1_2170 Escherichia coli DH1 plasmid maintenance system antidote protein YP_006092111.1 2325796 D 536056 CDS YP_006092112.1 386595712 12705774 complement(2326487..2327140) 1 NC_017625.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbc:SbBS512_E1739 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 2327140 12705774 EcDH1_2171 Escherichia coli DH1 formate dehydrogenase subunit gamma YP_006092112.1 2326487 R 536056 CDS YP_006092113.1 386595713 12705775 complement(2327133..2328017) 1 NC_017625.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: sbo:SBO_1582 formate dehydrogenase N, nitrate-inducible, iron-sulfur beta subunit; formate dehydrogenase subunit beta 2328017 12705775 EcDH1_2172 Escherichia coli DH1 formate dehydrogenase subunit beta YP_006092113.1 2327133 R 536056 CDS YP_006092114.1 386595714 12705776 complement(2328030..2330441) 1 NC_017625.1 KEGG: ssn:SSON_1650 formate dehydrogenase-N, nitrate-inducible, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 2330441 12705776 EcDH1_2173 Escherichia coli DH1 formate dehydrogenase subunit alpha YP_006092114.1 2328030 R 536056 CDS YP_006092115.1 386595715 12705777 complement(2330490..2331077) 1 NC_017625.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sbo:SBO_1583 formate dehydrogenase N, nitrate-inducible, alpha subunit; molybdopterin oxidoreductase Fe4S4 region 2331077 12705777 EcDH1_2174 Escherichia coli DH1 molybdopterin oxidoreductase Fe4S4 region YP_006092115.1 2330490 R 536056 CDS YP_006092116.1 386595716 12705778 2331309..2332190 1 NC_017625.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbo:SBO_1584 hypothetical protein; hypothetical protein 2332190 12705778 EcDH1_2175 Escherichia coli DH1 hypothetical protein YP_006092116.1 2331309 D 536056 CDS YP_006092117.1 386595717 12705779 2332450..2332740 1 NC_017625.1 KEGG: sbo:SBO_1585 putative outer membrane porin protein; putative outer membrane porin protein 2332740 12705779 EcDH1_2176 Escherichia coli DH1 putative outer membrane porin protein YP_006092117.1 2332450 D 536056 CDS YP_006092118.1 386595718 12705781 2334418..2335806 1 NC_017625.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_1756 nitrite extrusion protein 2; nitrite transporter 2335806 12705781 EcDH1_2178 Escherichia coli DH1 nitrite transporter YP_006092118.1 2334418 D 536056 CDS YP_006092119.1 386595719 12705782 2335888..2339628 1 NC_017625.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfv:SFV_1757 cryptic nitrate reductase 2, alpha subunit; nitrate reductase subunit alpha 2339628 12705782 EcDH1_2179 Escherichia coli DH1 nitrate reductase subunit alpha YP_006092119.1 2335888 D 536056 CDS YP_006092120.1 386595720 12705783 2339625..2341169 1 NC_017625.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: ssn:SSON_1658 cryptic nitrate reductase 2, beta subunit; nitrate reductase subunit beta 2341169 12705783 EcDH1_2180 Escherichia coli DH1 nitrate reductase subunit beta YP_006092120.1 2339625 D 536056 CDS YP_006092121.1 386595721 12705784 2341169..2341864 1 NC_017625.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: ssn:SSON_1659 cryptic nitrate reductase 2, delta subunit, assembly function; nitrate reductase molybdenum cofactor assembly chaperone 2341864 12705784 EcDH1_2181 Escherichia coli DH1 nitrate reductase molybdenum cofactor assembly chaperone YP_006092121.1 2341169 D 536056 CDS YP_006092122.1 386595722 12705785 2341861..2342541 1 NC_017625.1 KEGG: sdy:SDY_1653 cryptic nitrate reductase 2, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 2342541 12705785 EcDH1_2182 Escherichia coli DH1 respiratory nitrate reductase subunit gamma YP_006092122.1 2341861 D 536056 CDS YP_006092123.1 386595723 12705786 2342620..2343513 1 NC_017625.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: ssn:SSON_1661 hypothetical protein; phenazine biosynthesis protein PhzF family protein 2343513 12705786 EcDH1_2183 Escherichia coli DH1 phenazine biosynthesis protein PhzF family protein YP_006092123.1 2342620 D 536056 CDS YP_006092124.1 386595724 12705787 complement(2343609..2344454) 1 NC_017625.1 PFAM: N-acetyltransferase; KEGG: ssn:SSON_1662 putative N-hydroxyarylamine O-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 2344454 12705787 EcDH1_2184 Escherichia coli DH1 N-hydroxyarylamine O-acetyltransferase YP_006092124.1 2343609 R 536056 CDS YP_006092125.1 386595725 12705788 2344627..2345196 1 NC_017625.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: ssn:SSON_1663 hypothetical protein; flavin reductase domain-containing FMN-binding protein 2345196 12705788 EcDH1_2185 Escherichia coli DH1 flavin reductase domain-containing FMN-binding protein YP_006092125.1 2344627 D 536056 CDS YP_006092126.1 386595726 12705789 complement(2345193..2345426) 1 NC_017625.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: ssn:SSON_1664 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 2345426 12705789 EcDH1_2186 Escherichia coli DH1 4-oxalocrotonate tautomerase YP_006092126.1 2345193 R 536056 CDS YP_006092127.1 386595727 12705790 complement(2345526..2346662) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 putative receptor; transposase IS4 family protein 2346662 12705790 EcDH1_2187 Escherichia coli DH1 transposase IS4 family protein YP_006092127.1 2345526 R 536056 CDS YP_006092128.1 386595728 12705792 complement(2348074..2348556) 1 NC_017625.1 dCTP deaminase 2348556 12705792 EcDH1_2189 Escherichia coli DH1 dCTP deaminase YP_006092128.1 2348074 R 536056 CDS YP_006092129.1 386595729 12705793 complement(2348540..2350588) 1 NC_017625.1 PFAM: RHS protein; YD repeat-containing protein; KEGG: aav:Aave_3712 YD repeat protein; RHS protein 2350588 12705793 EcDH1_2190 Escherichia coli DH1 RHS protein YP_006092129.1 2348540 R 536056 CDS YP_006092130.1 386595730 12705794 complement(2351326..2351538) 1 NC_017625.1 KEGG: sdy:SDY_1950 hypothetical protein; hypothetical protein 2351538 12705794 EcDH1_2191 Escherichia coli DH1 hypothetical protein YP_006092130.1 2351326 R 536056 CDS YP_006092131.1 386595731 12705795 complement(2351614..2352231) 1 NC_017625.1 KEGG: sbo:SBO_1593 putative transferase; putative transferase 2352231 12705795 EcDH1_2192 Escherichia coli DH1 putative transferase YP_006092131.1 2351614 R 536056 CDS YP_006092132.1 386595732 12705796 2352498..2353997 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sbc:SbBS512_E1725 L-asparagine permease; amino acid permease 2353997 12705796 EcDH1_2193 Escherichia coli DH1 amino acid permease YP_006092132.1 2352498 D 536056 CDS YP_006092133.1 386595733 12705797 complement(2354110..2355171) 1 NC_017625.1 KEGG: sbo:SBO_1595 putative receptor; putative receptor 2355171 12705797 EcDH1_2194 Escherichia coli DH1 putative receptor YP_006092133.1 2354110 R 536056 CDS YP_006092134.1 386595734 12705798 2355413..2357515 1 NC_017625.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbo:SBO_1596 putative outer membrane receptor for iron transport; TonB-dependent receptor 2357515 12705798 EcDH1_2195 Escherichia coli DH1 TonB-dependent receptor YP_006092134.1 2355413 D 536056 CDS YP_006092135.1 386595735 12705799 complement(2357551..2358216) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sfv:SFV_1761 putative DNA-binding transcriptional regulator; GntR family transcriptional regulator 2358216 12705799 EcDH1_2196 Escherichia coli DH1 GntR family transcriptional regulator YP_006092135.1 2357551 R 536056 CDS YP_006092136.1 386595736 12705800 complement(2358414..2359451) 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sdy:SDY_1724 putative oxidoreductase; alcohol dehydrogenase 2359451 12705800 EcDH1_2197 Escherichia coli DH1 alcohol dehydrogenase YP_006092136.1 2358414 R 536056 CDS YP_006092137.1 386595737 12705801 2359632..2360150 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_1725 putative resistance protein; N-acetyltransferase GCN5 2360150 12705801 EcDH1_2198 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006092137.1 2359632 D 536056 CDS YP_006092138.1 386595738 12705802 2360147..2360596 1 NC_017625.1 PFAM: protein of unknown function DUF606; KEGG: sbo:SBO_1601 hypothetical protein; hypothetical protein 2360596 12705802 EcDH1_2199 Escherichia coli DH1 hypothetical protein YP_006092138.1 2360147 D 536056 CDS YP_006092139.1 386595739 12705803 complement(2360597..2360830) 1 NC_017625.1 KEGG: sbc:SbBS512_E1716 hypothetical protein; hypothetical protein 2360830 12705803 EcDH1_2200 Escherichia coli DH1 hypothetical protein YP_006092139.1 2360597 R 536056 CDS YP_006092140.1 386595740 12705804 complement(2360916..2361089) 1 NC_017625.1 KEGG: sdy:SDY_1729 hypothetical protein; hypothetical protein 2361089 12705804 EcDH1_2201 Escherichia coli DH1 hypothetical protein YP_006092140.1 2360916 R 536056 CDS YP_006092141.1 386595741 12705805 complement(2361476..2362900) 1 NC_017625.1 TIGRFAM: 1-pyrroline dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ssn:SSON_1693 putative aldehyde dehydrogenase; 1-pyrroline dehydrogenase 2362900 12705805 EcDH1_2202 Escherichia coli DH1 1-pyrroline dehydrogenase YP_006092141.1 2361476 R 536056 CDS YP_006092142.1 386595742 12705806 complement(2362922..2363716) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_1771 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 2363716 12705806 EcDH1_2203 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092142.1 2362922 R 536056 CDS YP_006092143.1 386595743 12705807 complement(2363706..2364647) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ent:Ent638_2126 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2364647 12705807 EcDH1_2204 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092143.1 2363706 R 536056 CDS YP_006092144.1 386595744 12705808 complement(2364648..2365661) 1 NC_017625.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ssn:SSON_1696 putative ATP-binding component of a transport system; ABC transporter 2365661 12705808 EcDH1_2205 Escherichia coli DH1 ABC transporter YP_006092144.1 2364648 R 536056 CDS YP_006092145.1 386595745 12705809 complement(2365679..2366824) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1697 putative transport protein; extracellular solute-binding protein 2366824 12705809 EcDH1_2206 Escherichia coli DH1 extracellular solute-binding protein YP_006092145.1 2365679 R 536056 CDS YP_006092146.1 386595746 12705810 complement(2367069..2368475) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ssn:SSON_1698 multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system; DeoR family transcriptional regulator 2368475 12705810 EcDH1_2207 Escherichia coli DH1 DeoR family transcriptional regulator YP_006092146.1 2367069 R 536056 CDS YP_006092147.1 386595747 12705811 complement(2368554..2368991) 1 NC_017625.1 PFAM: helix-turn-helix domain protein; protein of unknown function UPF0150; KEGG: sdy:SDY_1736 hypothetical protein; XRE family transcriptional regulator 2368991 12705811 EcDH1_2208 Escherichia coli DH1 XRE family transcriptional regulator YP_006092147.1 2368554 R 536056 CDS YP_006092148.1 386595748 12705812 complement(2369016..2369192) 1 NC_017625.1 PFAM: YcfA family protein; KEGG: cko:CKO_01475 hypothetical protein; hypothetical protein 2369192 12705812 EcDH1_2209 Escherichia coli DH1 hypothetical protein YP_006092148.1 2369016 R 536056 CDS YP_006092149.1 386595749 12705813 2369414..2369644 1 NC_017625.1 KEGG: ssn:SSON_1702 hypothetical protein; hypothetical protein 2369644 12705813 EcDH1_2210 Escherichia coli DH1 hypothetical protein YP_006092149.1 2369414 D 536056 CDS YP_006092150.1 386595750 12705814 complement(2369736..2371697) 1 NC_017625.1 PFAM: peptidase U32; KEGG: ssn:SSON_1703 putative collagenase; peptidase U32 2371697 12705814 EcDH1_2211 Escherichia coli DH1 peptidase U32 YP_006092150.1 2369736 R 536056 CDS YP_006092151.1 386595751 12705815 complement(2371770..2372306) 1 NC_017625.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: ssn:SSON_1704 hypothetical protein; XRE family transcriptional regulator 2372306 12705815 EcDH1_2212 Escherichia coli DH1 XRE family transcriptional regulator YP_006092151.1 2371770 R 536056 CDS YP_006092152.1 386595752 12705816 2372398..2373573 1 NC_017625.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: cko:CKO_01471 hypothetical protein; benzoate transporter 2373573 12705816 EcDH1_2213 Escherichia coli DH1 benzoate transporter YP_006092152.1 2372398 D 536056 CDS YP_006092153.1 386595753 12705817 complement(2373613..2374761) 1 NC_017625.1 KEGG: ssn:SSON_1709 putative virulence protein; TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; transposase, IS605 OrfB family 2374761 12705817 EcDH1_2214 Escherichia coli DH1 transposase, IS605 OrfB family YP_006092153.1 2373613 R 536056 CDS YP_006092154.1 386595754 12705819 complement(2375353..2376021) 1 NC_017625.1 KEGG: sfv:SFV_1775 hypothetical protein; hypothetical protein 2376021 12705819 EcDH1_2216 Escherichia coli DH1 hypothetical protein YP_006092154.1 2375353 R 536056 CDS YP_006092155.1 386595755 12705820 complement(2376323..2376916) 1 NC_017625.1 TIGRFAM: tellurite resistance protein TehB; PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: ssn:SSON_1712 tellurite resistance protein TehB; tellurite resistance protein TehB 2376916 12705820 EcDH1_2217 Escherichia coli DH1 tellurite resistance protein TehB YP_006092155.1 2376323 R 536056 CDS YP_006092156.1 386595756 12705821 complement(2376913..2377905) 1 NC_017625.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sfv:SFV_1777 potassium-tellurite ethidium and proflavin transporter; C4-dicarboxylate transporter/malic acid transport protein 2377905 12705821 EcDH1_2218 Escherichia coli DH1 C4-dicarboxylate transporter/malic acid transport protein YP_006092156.1 2376913 R 536056 CDS YP_006092157.1 386595757 12705822 2378029..2379009 1 NC_017625.1 KEGG: sfv:SFV_1778 hypothetical protein; hypothetical protein 2379009 12705822 EcDH1_2219 Escherichia coli DH1 hypothetical protein YP_006092157.1 2378029 D 536056 CDS YP_006092158.1 386595758 12705823 complement(2379001..2379540) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E1652 ribosomal-protein-serine acetyltransferase; N-acetyltransferase GCN5 2379540 12705823 EcDH1_2220 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006092158.1 2379001 R 536056 CDS YP_006092159.1 386595759 12705824 complement(2379603..2379827) 1 NC_017625.1 PFAM: protein of unknown function DUF465; KEGG: sfv:SFV_1780 hypothetical protein; hypothetical protein 2379827 12705824 EcDH1_2221 Escherichia coli DH1 hypothetical protein YP_006092159.1 2379603 R 536056 CDS YP_006092160.1 386595760 12705825 complement(2379967..2381586) 1 NC_017625.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: sbo:SBO_1663 glucan biosynthesis protein D; periplasmic glucan biosynthesis protein MdoG 2381586 12705825 EcDH1_2222 Escherichia coli DH1 periplasmic glucan biosynthesis protein MdoG YP_006092160.1 2379967 R 536056 CDS YP_006092161.1 386595761 12705826 complement(2381847..2383190) 1 NC_017625.1 PFAM: protein of unknown function DUF1338; KEGG: ssn:SSON_1719 hypothetical protein; hypothetical protein 2383190 12705826 EcDH1_2223 Escherichia coli DH1 hypothetical protein YP_006092161.1 2381847 R 536056 CDS YP_006092162.1 386595762 12705827 2383407..2384330 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_1720 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2384330 12705827 EcDH1_2224 Escherichia coli DH1 LysR family transcriptional regulator YP_006092162.1 2383407 D 536056 CDS YP_006092163.1 386595763 12705828 complement(2384368..2386008) 1 NC_017625.1 PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: sfx:S1485 methyl-accepting chemotaxis protein III, ribose sensor receptor; methyl-accepting chemotaxis sensory transducer 2386008 12705828 EcDH1_2225 Escherichia coli DH1 methyl-accepting chemotaxis sensory transducer YP_006092163.1 2384368 R 536056 CDS YP_006092164.1 386595764 12705829 2386349..2386516 1 NC_017625.1 KEGG: ssn:SSON_1722 hypothetical protein; hypothetical protein 2386516 12705829 EcDH1_2226 Escherichia coli DH1 hypothetical protein YP_006092164.1 2386349 D 536056 CDS YP_006092165.1 386595765 12705830 complement(2386628..2386801) 1 NC_017625.1 KEGG: sbc:SbBS512_E1643 hypothetical protein; hypothetical protein 2386801 12705830 EcDH1_2227 Escherichia coli DH1 hypothetical protein YP_006092165.1 2386628 R 536056 CDS YP_006092166.1 386595766 12705831 complement(2387046..2387576) 1 NC_017625.1 PFAM: cytochrome B561; KEGG: sbc:SbBS512_E1642 nickel-dependent hydrogenase, b-type cytochrome subunit; cytochrome B561 2387576 12705831 EcDH1_2228 Escherichia coli DH1 cytochrome B561 YP_006092166.1 2387046 R 536056 CDS YP_006092167.1 386595767 12705833 complement(2388807..2390246) 1 NC_017625.1 PFAM: Aldehyde Dehydrogenase; KEGG: sbc:SbBS512_E1635 aldehyde dehydrogenase A; aldehyde dehydrogenase 2390246 12705833 EcDH1_2230 Escherichia coli DH1 aldehyde dehydrogenase YP_006092167.1 2388807 R 536056 CDS YP_006092168.1 386595768 12705834 complement(2390443..2391243) 1 NC_017625.1 PFAM: protein of unknown function DUF218; KEGG: sbo:SBO_1673 hypothetical protein; hypothetical protein 2391243 12705834 EcDH1_2231 Escherichia coli DH1 hypothetical protein YP_006092168.1 2390443 R 536056 CDS YP_006092169.1 386595769 12705835 complement(2391515..2395417) 1 NC_017625.1 KEGG: sbc:SbBS512_E1633 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA 2395417 12705835 EcDH1_2232 Escherichia coli DH1 ATP-dependent helicase HrpA YP_006092169.1 2391515 R 536056 CDS YP_006092170.1 386595770 12705836 2395618..2396223 1 NC_017625.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbc:SbBS512_E1632 FMN-dependent NADH-azoreductase; NAD(P)H dehydrogenase (quinone) 2396223 12705836 EcDH1_2233 Escherichia coli DH1 NAD(P)H dehydrogenase (quinone) YP_006092170.1 2395618 D 536056 CDS YP_006092171.1 386595771 12705837 complement(2396277..2397593) 1 NC_017625.1 PFAM: phosphoesterase PA-phosphatase related; Dual specificity protein phosphatase; SMART: Protein-tyrosine phosphatase, catalytic; KEGG: sbc:SbBS512_E1631 PAP2 family protein; putative dual specificity phosphatase 2397593 12705837 EcDH1_2234 Escherichia coli DH1 putative dual specificity phosphatase YP_006092171.1 2396277 R 536056 CDS YP_006092172.1 386595772 12705838 complement(2397583..2399340) 1 NC_017625.1 KEGG: sdy:SDY_1779 hypothetical protein; hypothetical protein 2399340 12705838 EcDH1_2235 Escherichia coli DH1 hypothetical protein YP_006092172.1 2397583 R 536056 CDS YP_006092173.1 386595773 12705839 complement(2399356..2400252) 1 NC_017625.1 PFAM: phosphatidate cytidylyltransferase; KEGG: sfx:S1465 putative phosphatidate cytidiltransferase; phosphatidate cytidylyltransferase 2400252 12705839 EcDH1_2236 Escherichia coli DH1 phosphatidate cytidylyltransferase YP_006092173.1 2399356 R 536056 CDS YP_006092174.1 386595774 12705840 complement(2400252..2400857) 1 NC_017625.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sbc:SbBS512_E1623 CDP-alcohol phosphatidyltransferase family protein; CDP-alcohol phosphatidyltransferase 2400857 12705840 EcDH1_2237 Escherichia coli DH1 CDP-alcohol phosphatidyltransferase YP_006092174.1 2400252 R 536056 CDS YP_006092175.1 386595775 12705841 complement(2401028..2403334) 1 NC_017625.1 KEGG: sfv:SFV_1802 hypothetical protein; hypothetical protein 2403334 12705841 EcDH1_2238 Escherichia coli DH1 hypothetical protein YP_006092175.1 2401028 R 536056 CDS YP_006092176.1 386595776 12705842 complement(2403397..2404257) 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: cko:CKO_01438 putative oxidoreductase; aldo/keto reductase 2404257 12705842 EcDH1_2239 Escherichia coli DH1 aldo/keto reductase YP_006092176.1 2403397 R 536056 CDS YP_006092177.1 386595777 12705843 complement(2404465..2407788) 1 NC_017625.1 PFAM: Autotransporter beta- domain protein; KEGG: sek:SSPA3121a putative surface-exposed virulence protein; autotransporter beta-domain-containing protein 2407788 12705843 EcDH1_2240 Escherichia coli DH1 autotransporter beta-domain-containing protein YP_006092177.1 2404465 R 536056 CDS YP_006092178.1 386595778 12705844 complement(2407969..2409120) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: bac:BamMC406_6641 integrase catalytic region; integrase catalytic subunit 2409120 12705844 EcDH1_2241 Escherichia coli DH1 integrase catalytic subunit YP_006092178.1 2407969 R 536056 CDS YP_006092179.1 386595779 12705845 2409329..2409694 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 2409694 12705845 EcDH1_2242 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006092179.1 2409329 D 536056 CDS YP_006092180.1 386595780 12705846 2409652..2410557 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 2410557 12705846 EcDH1_2243 Escherichia coli DH1 integrase catalytic subunit YP_006092180.1 2409652 D 536056 CDS YP_006092181.1 386595781 12705847 complement(2410528..2413086) 1 NC_017625.1 KEGG: cko:CKO_04793 hypothetical protein; hypothetical protein 2413086 12705847 EcDH1_2244 Escherichia coli DH1 hypothetical protein YP_006092181.1 2410528 R 536056 CDS YP_006092182.1 386595782 12705848 complement(2413417..2414007) 1 NC_017625.1 TIGRFAM: phenylacetic acid degradation protein PaaY; KEGG: kpe:KPK_2988 phenylacetic acid degradation protein PaaY; phenylacetic acid degradation protein PaaY 2414007 12705848 EcDH1_2245 Escherichia coli DH1 phenylacetic acid degradation protein PaaY YP_006092182.1 2413417 R 536056 CDS YP_006092183.1 386595783 12705849 complement(2413989..2414939) 1 NC_017625.1 TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: kpn:KPN_01480 transcriptional repressor for phenylacetic acid degradation; PaaX family transcriptional regulator 2414939 12705849 EcDH1_2246 Escherichia coli DH1 PaaX family transcriptional regulator YP_006092183.1 2413989 R 536056 CDS YP_006092184.1 386595784 12705850 complement(2415040..2416353) 1 NC_017625.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: kpn:KPN_01479 phenylacetate-CoA ligase; phenylacetate-CoA ligase 2416353 12705850 EcDH1_2247 Escherichia coli DH1 phenylacetate-CoA ligase YP_006092184.1 2415040 R 536056 CDS YP_006092185.1 386595785 12705851 complement(2416380..2417585) 1 NC_017625.1 KEGG: kpn:KPN_01478 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 2417585 12705851 EcDH1_2248 Escherichia coli DH1 beta-ketoadipyl CoA thiolase YP_006092185.1 2416380 R 536056 CDS YP_006092186.1 386595786 12705852 complement(2417585..2418007) 1 NC_017625.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: kpe:KPK_2992 phenylacetic acid degradation protein PaaI; phenylacetic acid degradation protein PaaD 2418007 12705852 EcDH1_2249 Escherichia coli DH1 phenylacetic acid degradation protein PaaD YP_006092186.1 2417585 R 536056 CDS YP_006092187.1 386595787 12705853 complement(2417997..2419424) 1 NC_017625.1 KEGG: kpn:KPN_01476 3-hydroxybutyryl-CoA dehydrogenase; TIGRFAM: 3-hydroxyacyl-CoA dehydrogenase PaaC; PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 2419424 12705853 EcDH1_2250 Escherichia coli DH1 3-hydroxyacyl-CoA dehydrogenase YP_006092187.1 2417997 R 536056 CDS YP_006092188.1 386595788 12705854 complement(2419426..2420214) 1 NC_017625.1 TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: kpe:KPK_2994 enoyl-CoA hydratase PaaG; phenylacetate degradation, enoyl-CoA hydratase paaB 2420214 12705854 EcDH1_2251 Escherichia coli DH1 phenylacetate degradation, enoyl-CoA hydratase paaB YP_006092188.1 2419426 R 536056 CDS YP_006092189.1 386595789 12705855 complement(2420214..2420981) 1 NC_017625.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: kpn:KPN_01474 probable enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 2420981 12705855 EcDH1_2252 Escherichia coli DH1 Enoyl-CoA hydratase/isomerase YP_006092189.1 2420214 R 536056 CDS YP_006092190.1 386595790 12705856 complement(2420978..2422048) 1 NC_017625.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: kpe:KPK_2996 phenylacetate-CoA oxygenase, NAD(P)H oxidoreductase component PaaE; phenylacetate-CoA oxygenase/reductase subunit PaaK 2422048 12705856 EcDH1_2253 Escherichia coli DH1 phenylacetate-CoA oxygenase/reductase subunit PaaK YP_006092190.1 2420978 R 536056 CDS YP_006092191.1 386595791 12705857 complement(2422056..2422553) 1 NC_017625.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: kpn:KPN_01472 phenylacetic acid degradation protein; phenylacetate-CoA oxygenase subunit PaaJ 2422553 12705857 EcDH1_2254 Escherichia coli DH1 phenylacetate-CoA oxygenase subunit PaaJ YP_006092191.1 2422056 R 536056 CDS YP_006092192.1 386595792 12705858 complement(2422568..2423314) 1 NC_017625.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: kpn:KPN_01471 phenylacetic acid degradation protein; phenylacetate-CoA oxygenase subunit PaaI 2423314 12705858 EcDH1_2255 Escherichia coli DH1 phenylacetate-CoA oxygenase subunit PaaI YP_006092192.1 2422568 R 536056 CDS YP_006092193.1 386595793 12705859 complement(2423323..2423610) 1 NC_017625.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: kpe:KPK_2999 phenylacetate-CoA oxygenase, effector protein; phenylacetate-CoA oxygenase subunit PaaH 2423610 12705859 EcDH1_2256 Escherichia coli DH1 phenylacetate-CoA oxygenase subunit PaaH YP_006092193.1 2423323 R 536056 CDS YP_006092194.1 386595794 12705861 2424836..2426881 1 NC_017625.1 TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: kpn:KPN_01468 phenylacetic acid degradation protein; putative aldehyde dehydrogenase; phenylacetic acid degradation protein paaN 2426881 12705861 EcDH1_2258 Escherichia coli DH1 phenylacetic acid degradation protein paaN YP_006092194.1 2424836 D 536056 CDS YP_006092195.1 386595795 12705862 2427129..2429402 1 NC_017625.1 PFAM: copper amine oxidase domain protein; Copper amine oxidase ; Copper amine oxidase N2-terminal; Copper amine oxidase N3-terminal; KEGG: kpe:KPK_3002 copper amine oxidase; Amine oxidase (copper-containing) 2429402 12705862 EcDH1_2259 Escherichia coli DH1 Amine oxidase (copper-containing) YP_006092195.1 2427129 D 536056 CDS YP_006092196.1 386595796 12705863 complement(2429460..2430959) 1 NC_017625.1 PFAM: Aldehyde Dehydrogenase; KEGG: kpn:KPN_01455 phenylacetaldehyde dehydrogenase; phenylacetaldehyde dehydrogenase 2430959 12705863 EcDH1_2260 Escherichia coli DH1 phenylacetaldehyde dehydrogenase YP_006092196.1 2429460 R 536056 CDS YP_006092197.1 386595797 12705864 2431195..2432100 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: kpe:KPK_3018 transcriptional activator FeaR; AraC family transcriptional regulator 2432100 12705864 EcDH1_2261 Escherichia coli DH1 AraC family transcriptional regulator YP_006092197.1 2431195 D 536056 CDS YP_006092198.1 386595798 12705865 complement(2432272..2432598) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbo:SBO_1683 hypothetical protein; hypothetical protein 2432598 12705865 EcDH1_2262 Escherichia coli DH1 hypothetical protein YP_006092198.1 2432272 R 536056 CDS YP_006092199.1 386595799 12705866 complement(2432606..2432791) 1 NC_017625.1 KEGG: ssn:SSON_1742 hypothetical protein; hypothetical protein 2432791 12705866 EcDH1_2263 Escherichia coli DH1 hypothetical protein YP_006092199.1 2432606 R 536056 CDS YP_006092200.1 386595800 12705867 complement(2432788..2435427) 1 NC_017625.1 KEGG: sbo:SBO_1685 hypothetical protein; hypothetical protein 2435427 12705867 EcDH1_2264 Escherichia coli DH1 hypothetical protein YP_006092200.1 2432788 R 536056 CDS YP_006092201.1 386595801 12705868 2435635..2436624 1 NC_017625.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E1618 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2436624 12705868 EcDH1_2265 Escherichia coli DH1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_006092201.1 2435635 D 536056 CDS YP_006092202.1 386595802 12705869 2436735..2437157 1 NC_017625.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: sbc:SbBS512_E1616 heat shock protein HslJ; hypothetical protein 2437157 12705869 EcDH1_2266 Escherichia coli DH1 hypothetical protein YP_006092202.1 2436735 D 536056 CDS YP_006092203.1 386595803 12705870 complement(2437154..2437420) 1 NC_017625.1 KEGG: sdy:SDY_1462 hypothetical protein; hypothetical protein 2437420 12705870 EcDH1_2267 Escherichia coli DH1 hypothetical protein YP_006092203.1 2437154 R 536056 CDS YP_006092204.1 386595804 12705871 2437694..2441218 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: sbo:SBO_1688 putative oxidoreductase, Fe-S subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2441218 12705871 EcDH1_2268 Escherichia coli DH1 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_006092204.1 2437694 D 536056 CDS YP_006092205.1 386595805 12705872 2441585..2442718 1 NC_017625.1 PFAM: porin Gram-negative type; KEGG: sbc:SbBS512_E1614 outer membrane protein N; porin 2442718 12705872 EcDH1_2269 Escherichia coli DH1 porin YP_006092205.1 2441585 D 536056 CDS YP_006092206.1 386595806 12705873 2442859..2443293 1 NC_017625.1 PFAM: UspA domain protein; KEGG: sdy:SDY_1458 putative filament protein; UspA domain-containing protein 2443293 12705873 EcDH1_2270 Escherichia coli DH1 UspA domain-containing protein YP_006092206.1 2442859 D 536056 CDS YP_006092207.1 386595807 12705874 2444254..2444487 1 NC_017625.1 KEGG: ent:Ent638_2496 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 2444487 12705874 EcDH1_2271 Escherichia coli DH1 DNA-binding transcriptional regulator YP_006092207.1 2444254 D 536056 CDS YP_006092208.1 386595808 12705875 2444804..2445394 1 NC_017625.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: sbl:Sbal_4419 resolvase domain-containing protein; Resolvase domain-containing protein 2445394 12705875 EcDH1_2272 Escherichia coli DH1 Resolvase domain-containing protein YP_006092208.1 2444804 D 536056 CDS YP_006092209.1 386595809 12705876 complement(2445492..2446067) 1 NC_017625.1 PFAM: tail assembly chaperone gp38; KEGG: sbc:SbBS512_E1479 tail fiber assembly protein; tail assembly chaperone gp38 2446067 12705876 EcDH1_2273 Escherichia coli DH1 tail assembly chaperone gp38 YP_006092209.1 2445492 R 536056 CDS YP_006092210.1 386595810 12705877 complement(2446067..2449429) 1 NC_017625.1 PFAM: tail fiber repeat containing protein; tail fiber repeat 2 protein; Tail Collar domain protein; Prophage tail fibre domain protein; KEGG: ssn:SSON_2410 phage protein-related; prophage tail fiber protein 2449429 12705877 EcDH1_2274 Escherichia coli DH1 prophage tail fiber protein YP_006092210.1 2446067 R 536056 CDS YP_006092211.1 386595811 12705879 2449752..2450732 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: seh:SeHA_C4726 IS5 transposase; transposase IS4 family protein 2450732 12705879 EcDH1_2276 Escherichia coli DH1 transposase IS4 family protein YP_006092211.1 2449752 D 536056 CDS YP_006092212.1 386595812 12705880 complement(2450996..2452024) 1 NC_017625.1 KEGG: kpn:KPN_01428 putative phage tail protein; putative phage tail protein 2452024 12705880 EcDH1_2277 Escherichia coli DH1 putative phage tail protein YP_006092212.1 2450996 R 536056 CDS YP_006092213.1 386595813 12705881 complement(2452498..2452857) 1 NC_017625.1 KEGG: cko:CKO_01855 hypothetical protein; hypothetical protein 2452857 12705881 EcDH1_2278 Escherichia coli DH1 hypothetical protein YP_006092213.1 2452498 R 536056 CDS YP_006092214.1 386595814 12705882 complement(2452838..2453101) 1 NC_017625.1 PFAM: ParB domain protein nuclease; KEGG: ypi:YpsIP31758_2231 ParB family protein; ParB domain-containing protein nuclease 2453101 12705882 EcDH1_2279 Escherichia coli DH1 ParB domain-containing protein nuclease YP_006092214.1 2452838 R 536056 CDS YP_006092215.1 386595815 12705883 complement(2453239..2454663) 1 NC_017625.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: esa:ESA_pESA3p05484 hypothetical protein; TrkH family potassium uptake protein 2454663 12705883 EcDH1_2280 Escherichia coli DH1 TrkH family potassium uptake protein YP_006092215.1 2453239 R 536056 CDS YP_006092216.1 386595816 12705886 complement(2455749..2456495) 1 NC_017625.1 PFAM: IstB domain protein ATP-binding protein; KEGG: sty:STY2062 putative replication protein; IstB domain-containing protein ATP-binding protein 2456495 12705886 EcDH1_2283 Escherichia coli DH1 IstB domain-containing protein ATP-binding protein YP_006092216.1 2455749 R 536056 CDS YP_006092217.1 386595817 12705887 complement(2456502..2457359) 1 NC_017625.1 PFAM: protein of unknown function DUF1376; KEGG: spq:SPAB_02188 hypothetical protein; hypothetical protein 2457359 12705887 EcDH1_2284 Escherichia coli DH1 hypothetical protein YP_006092217.1 2456502 R 536056 CDS YP_006092218.1 386595818 12705888 complement(2457372..2457794) 1 NC_017625.1 PFAM: protein of unknown function DUF1019; KEGG: sbc:SbBS512_E0692 hypothetical protein; hypothetical protein 2457794 12705888 EcDH1_2285 Escherichia coli DH1 hypothetical protein YP_006092218.1 2457372 R 536056 CDS YP_006092219.1 386595819 12705889 complement(2457817..2458113) 1 NC_017625.1 KEGG: xfa:XF0501 hypothetical protein; hypothetical protein 2458113 12705889 EcDH1_2286 Escherichia coli DH1 hypothetical protein YP_006092219.1 2457817 R 536056 CDS YP_006092220.1 386595820 12705890 2458237..2458713 1 NC_017625.1 KEGG: pmr:PMI0903 prophage repressor; prophage repressor 2458713 12705890 EcDH1_2287 Escherichia coli DH1 prophage repressor YP_006092220.1 2458237 D 536056 CDS YP_006092221.1 386595821 12705891 2459022..2459156 1 NC_017625.1 hypothetical protein 2459156 12705891 EcDH1_2288 Escherichia coli DH1 hypothetical protein YP_006092221.1 2459022 D 536056 CDS YP_006092222.1 386595822 12705892 2459167..2459322 1 NC_017625.1 PFAM: protein of unknown function DUF1391; KEGG: sbc:SbBS512_E0694 hypothetical protein; hypothetical protein 2459322 12705892 EcDH1_2289 Escherichia coli DH1 hypothetical protein YP_006092222.1 2459167 D 536056 CDS YP_006092223.1 386595823 12705893 complement(2459319..2459930) 1 NC_017625.1 KEGG: set:SEN1382 putative phage membrane protein; hypothetical protein 2459930 12705893 EcDH1_2290 Escherichia coli DH1 hypothetical protein YP_006092223.1 2459319 R 536056 CDS YP_006092224.1 386595824 12705894 2460249..2460470 1 NC_017625.1 KEGG: sfl:SF1377 FtsZ inhibitor protein; FtsZ inhibitor protein 2460470 12705894 EcDH1_2291 Escherichia coli DH1 FtsZ inhibitor protein YP_006092224.1 2460249 D 536056 CDS YP_006092225.1 386595825 12705895 2460470..2460640 1 NC_017625.1 KEGG: sty:STY2071 putative bacteriophage protein; putative bacteriophage protein 2460640 12705895 EcDH1_2292 Escherichia coli DH1 putative bacteriophage protein YP_006092225.1 2460470 D 536056 CDS YP_006092226.1 386595826 12705896 2460715..2460990 1 NC_017625.1 KEGG: sfx:S1954 hypothetical protein; hypothetical protein 2460990 12705896 EcDH1_2293 Escherichia coli DH1 hypothetical protein YP_006092226.1 2460715 D 536056 CDS YP_006092227.1 386595827 12705897 2461092..2463692 1 NC_017625.1 PFAM: exodeoxyribonuclease VIII; KEGG: sty:STY2073 exonuclease VIII; exodeoxyribonuclease VIII 2463692 12705897 EcDH1_2294 Escherichia coli DH1 exodeoxyribonuclease VIII YP_006092227.1 2461092 D 536056 CDS YP_006092228.1 386595828 12705898 2463685..2464494 1 NC_017625.1 PFAM: RecT protein; KEGG: spq:SPAB_02270 recombination and repair protein RecT; RecT protein 2464494 12705898 EcDH1_2295 Escherichia coli DH1 RecT protein YP_006092228.1 2463685 D 536056 CDS YP_006092229.1 386595829 12705899 2464738..2464947 1 NC_017625.1 PFAM: protein of unknown function DUF1187; KEGG: sty:STY2075 hypothetical protein; hypothetical protein 2464947 12705899 EcDH1_2296 Escherichia coli DH1 hypothetical protein YP_006092229.1 2464738 D 536056 CDS YP_006092230.1 386595830 12705900 2465026..2465241 1 NC_017625.1 PFAM: protein of unknown function DUF1233 excisionase putative; KEGG: sfl:SF1369 hypothetical protein; hypothetical protein 2465241 12705900 EcDH1_2297 Escherichia coli DH1 hypothetical protein YP_006092230.1 2465026 D 536056 CDS YP_006092231.1 386595831 12705901 2465243..2466478 1 NC_017625.1 PFAM: integrase family protein; KEGG: sbo:SBO_1716 putative transposase; integrase family protein 2466478 12705901 EcDH1_2298 Escherichia coli DH1 integrase family protein YP_006092231.1 2465243 D 536056 CDS YP_006092232.1 386595832 12705902 2466530..2467465 1 NC_017625.1 PFAM: PP-loop domain protein; KEGG: ssn:SSON_1787 C32 tRNA thiolase; PP-loop domain-containing protein 2467465 12705902 EcDH1_2299 Escherichia coli DH1 PP-loop domain-containing protein YP_006092232.1 2466530 D 536056 CDS YP_006092233.1 386595833 12705903 complement(2467594..2468967) 1 NC_017625.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbo:SBO_1718 ATP-dependent RNA helicase DbpA; DEAD/DEAH box helicase 2468967 12705903 EcDH1_2300 Escherichia coli DH1 DEAD/DEAH box helicase YP_006092233.1 2467594 R 536056 CDS YP_006092234.1 386595834 12705904 complement(2468997..2469170) 1 NC_017625.1 KEGG: esa:ESA_01673 hypothetical protein; hypothetical protein 2469170 12705904 EcDH1_2301 Escherichia coli DH1 hypothetical protein YP_006092234.1 2468997 R 536056 CDS YP_006092235.1 386595835 12705905 complement(2469445..2470428) 1 NC_017625.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sdy:SDY_1424 zinc transporter; Mg2 transporter protein CorA family protein 2470428 12705905 EcDH1_2302 Escherichia coli DH1 Mg2 transporter protein CorA family protein YP_006092235.1 2469445 R 536056 CDS YP_006092236.1 386595836 12705906 2470683..2471915 1 NC_017625.1 KEGG: sbo:SBO_1720 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2471915 12705906 EcDH1_2303 Escherichia coli DH1 PAS/PAC sensor-containing diguanylate cyclase YP_006092236.1 2470683 D 536056 CDS YP_006092237.1 386595837 12705907 complement(2471936..2472499) 1 NC_017625.1 PFAM: Smr protein/MutS2; KEGG: ssn:SSON_1791 hypothetical protein; Smr protein/MutS2 2472499 12705907 EcDH1_2304 Escherichia coli DH1 Smr protein/MutS2 YP_006092237.1 2471936 R 536056 CDS YP_006092238.1 386595838 12705908 complement(2472829..2473737) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_1792 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 2473737 12705908 EcDH1_2305 Escherichia coli DH1 LysR family transcriptional regulator YP_006092238.1 2472829 R 536056 CDS YP_006092239.1 386595839 12705909 2473913..2475223 1 NC_017625.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ssn:SSON_1793 putative aminohydrolase; amidohydrolase 2475223 12705909 EcDH1_2306 Escherichia coli DH1 amidohydrolase YP_006092239.1 2473913 D 536056 CDS YP_006092240.1 386595840 12705910 2475223..2476587 1 NC_017625.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ssn:SSON_1794 hypothetical protein; amidohydrolase 2476587 12705910 EcDH1_2307 Escherichia coli DH1 amidohydrolase YP_006092240.1 2475223 D 536056 CDS YP_006092241.1 386595841 12705911 2476705..2478231 1 NC_017625.1 TIGRFAM: AbgT transporter family; PFAM: AbgT putative transporter; KEGG: sbo:SBO_1725 putative aminobenzoyl-glutamate transporter; AbgT transporter family 2478231 12705911 EcDH1_2308 Escherichia coli DH1 AbgT transporter family YP_006092241.1 2476705 D 536056 CDS YP_006092242.1 386595842 12705912 2478242..2478757 1 NC_017625.1 KEGG: sfv:SFV_1824 O-6-alkylguanine-DNA:cysteine-protein methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 2478757 12705912 EcDH1_2309 Escherichia coli DH1 methylated-DNA--protein-cysteine methyltransferase YP_006092242.1 2478242 D 536056 CDS YP_006092243.1 386595843 12705913 complement(2479035..2480015) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 2480015 12705913 EcDH1_2310 Escherichia coli DH1 transposase IS4 family protein YP_006092243.1 2479035 R 536056 CDS YP_006092244.1 386595844 12705914 2480151..2480903 1 NC_017625.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sbc:SbBS512_E1575 fumarate and nitrate reduction regulatory protein; CarD family transcriptional regulator 2480903 12705914 EcDH1_2311 Escherichia coli DH1 CarD family transcriptional regulator YP_006092244.1 2480151 D 536056 CDS YP_006092245.1 386595845 12705915 2481055..2482005 1 NC_017625.1 PFAM: UspA domain protein; KEGG: ssn:SSON_1800 universal stress protein UspE; UspA domain-containing protein 2482005 12705915 EcDH1_2312 Escherichia coli DH1 UspA domain-containing protein YP_006092245.1 2481055 D 536056 CDS YP_006092246.1 386595846 12705916 complement(2482055..2482312) 1 NC_017625.1 KEGG: ssn:SSON_1801 hypothetical protein; hypothetical protein 2482312 12705916 EcDH1_2313 Escherichia coli DH1 hypothetical protein YP_006092246.1 2482055 R 536056 CDS YP_006092247.1 386595847 12705917 complement(2482585..2483565) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 2483565 12705917 EcDH1_2314 Escherichia coli DH1 transposase IS4 family protein YP_006092247.1 2482585 R 536056 CDS YP_006092248.1 386595848 12705918 2483755..2484786 1 NC_017625.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sbc:SbBS512_E1570 transporter, small conductance mechanosensitive ion channel family; mechanosensitive ion channel protein MscS 2484786 12705918 EcDH1_2315 Escherichia coli DH1 mechanosensitive ion channel protein MscS YP_006092248.1 2483755 D 536056 CDS YP_006092249.1 386595849 12705919 complement(2484837..2486450) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_1804 putative transport periplasmic protein; family 5 extracellular solute-binding protein 2486450 12705919 EcDH1_2316 Escherichia coli DH1 family 5 extracellular solute-binding protein YP_006092249.1 2484837 R 536056 CDS YP_006092250.1 386595850 12705920 complement(2486787..2487686) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_1734 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2487686 12705920 EcDH1_2317 Escherichia coli DH1 LysR family transcriptional regulator YP_006092250.1 2486787 R 536056 CDS YP_006092251.1 386595851 12705921 2487824..2488744 1 NC_017625.1 KEGG: ssn:SSON_1806 hypothetical protein; hypothetical protein 2488744 12705921 EcDH1_2318 Escherichia coli DH1 hypothetical protein YP_006092251.1 2487824 D 536056 CDS YP_006092252.1 386595852 12705922 2488815..2488997 1 NC_017625.1 KEGG: sbc:SbBS512_E1562 hypothetical protein; hypothetical protein 2488997 12705922 EcDH1_2319 Escherichia coli DH1 hypothetical protein YP_006092252.1 2488815 D 536056 CDS YP_006092253.1 386595853 12705923 2489019..2489807 1 NC_017625.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: sbo:SBO_1744 murein peptide amidase A; peptidase M14 carboxypeptidase A 2489807 12705923 EcDH1_2320 Escherichia coli DH1 peptidase M14 carboxypeptidase A YP_006092253.1 2489019 D 536056 CDS YP_006092254.1 386595854 12705924 complement(2489782..2490747) 1 NC_017625.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sfv:SFV_1341 putative muconate cycloisomerase I; mandelate racemase/muconate lactonizing protein 2490747 12705924 EcDH1_2321 Escherichia coli DH1 mandelate racemase/muconate lactonizing protein YP_006092254.1 2489782 R 536056 CDS YP_006092255.1 386595855 12705925 2490866..2491372 1 NC_017625.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sdy:SDY_1402 thiol peroxidase; Redoxin domain-containing protein 2491372 12705925 EcDH1_2322 Escherichia coli DH1 Redoxin domain-containing protein YP_006092255.1 2490866 D 536056 CDS YP_006092256.1 386595856 12705926 complement(2491416..2492957) 1 NC_017625.1 PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: sbc:SbBS512_E1556 transcriptional regulatory protein TyrR; transcriptional regulator TyrR 2492957 12705926 EcDH1_2323 Escherichia coli DH1 transcriptional regulator TyrR YP_006092256.1 2491416 R 536056 CDS YP_006092257.1 386595857 12705927 complement(2493105..2494166) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E1555 hypothetical protein; hypothetical protein 2494166 12705927 EcDH1_2324 Escherichia coli DH1 hypothetical protein YP_006092257.1 2493105 R 536056 CDS YP_006092258.1 386595858 12705928 complement(2494163..2495560) 1 NC_017625.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: sbc:SbBS512_E1554 hypothetical protein; hypothetical protein 2495560 12705928 EcDH1_2325 Escherichia coli DH1 hypothetical protein YP_006092258.1 2494163 R 536056 CDS YP_006092259.1 386595859 12705929 2495716..2496714 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E1553 transcriptional regulator, LacI family; LacI family transcriptional regulator 2496714 12705929 EcDH1_2326 Escherichia coli DH1 LacI family transcriptional regulator YP_006092259.1 2495716 D 536056 CDS YP_006092260.1 386595860 12705930 complement(2496825..2497730) 1 NC_017625.1 KEGG: sbc:SbBS512_E1552 monomeric porin OmpG; monomeric porin OmpG 2497730 12705930 EcDH1_2327 Escherichia coli DH1 monomeric porin OmpG YP_006092260.1 2496825 R 536056 CDS YP_006092261.1 386595861 12705932 complement(2498870..2499529) 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_1823 putative beta-phosphoglucomutase; beta-phosphoglucomutase 2499529 12705932 EcDH1_2329 Escherichia coli DH1 beta-phosphoglucomutase YP_006092261.1 2498870 R 536056 CDS YP_006092262.1 386595862 12705933 complement(2499526..2501793) 1 NC_017625.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: ssn:SSON_1824 hypothetical protein; Kojibiose phosphorylase 2501793 12705933 EcDH1_2330 Escherichia coli DH1 Kojibiose phosphorylase YP_006092262.1 2499526 R 536056 CDS YP_006092263.1 386595863 12705934 complement(2501790..2502845) 1 NC_017625.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ssn:SSON_1825 putative dehydrogenase; oxidoreductase domain-containing protein 2502845 12705934 EcDH1_2331 Escherichia coli DH1 oxidoreductase domain-containing protein YP_006092263.1 2501790 R 536056 CDS YP_006092264.1 386595864 12705935 complement(2502855..2503643) 1 NC_017625.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ssn:SSON_1826 putative transient receptor potential locus; xylose isomerase domain-containing protein 2503643 12705935 EcDH1_2332 Escherichia coli DH1 xylose isomerase domain-containing protein YP_006092264.1 2502855 R 536056 CDS YP_006092265.1 386595865 12705936 complement(2503662..2504714) 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sfv:SFV_1329 putative oxidoreductase; alcohol dehydrogenase 2504714 12705936 EcDH1_2333 Escherichia coli DH1 alcohol dehydrogenase YP_006092265.1 2503662 R 536056 CDS YP_006092266.1 386595866 12705937 complement(2504745..2505587) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_1328 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 2505587 12705937 EcDH1_2334 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092266.1 2504745 R 536056 CDS YP_006092267.1 386595867 12705938 complement(2505574..2506455) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1829 putative binding-protein dependent transport protein; binding-protein-dependent transport system inner membrane protein 2506455 12705938 EcDH1_2335 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092267.1 2505574 R 536056 CDS YP_006092268.1 386595868 12705939 complement(2506476..2507768) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1830 putative transport periplasmic protein; extracellular solute-binding protein 2507768 12705939 EcDH1_2336 Escherichia coli DH1 extracellular solute-binding protein YP_006092268.1 2506476 R 536056 CDS YP_006092269.1 386595869 12705940 complement(2507782..2509461) 1 NC_017625.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ses:SARI_01284 hypothetical protein; alpha amylase 2509461 12705940 EcDH1_2337 Escherichia coli DH1 alpha amylase YP_006092269.1 2507782 R 536056 CDS YP_006092270.1 386595870 12705941 complement(2509674..2509988) 1 NC_017625.1 TIGRFAM: phage shock operon rhodanese PspE; PFAM: Rhodanese domain protein; KEGG: sbc:SbBS512_E1544 phage shock protein E; phage shock operon rhodanese PspE 2509988 12705941 EcDH1_2338 Escherichia coli DH1 phage shock operon rhodanese PspE YP_006092270.1 2509674 R 536056 CDS YP_006092271.1 386595871 12705942 complement(2510063..2510284) 1 NC_017625.1 TIGRFAM: phage shock protein PspD; PFAM: shock protein PspD; KEGG: sdy:SDY_1937 peripheral inner membrane phage-shock protein; phage shock protein PspD 2510284 12705942 EcDH1_2339 Escherichia coli DH1 phage shock protein PspD YP_006092271.1 2510063 R 536056 CDS YP_006092272.1 386595872 12705943 complement(2510293..2510652) 1 NC_017625.1 TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: sdy:SDY_1938 DNA-binding transcriptional activator; phage shock protein C, PspC 2510652 12705943 EcDH1_2340 Escherichia coli DH1 phage shock protein C, PspC YP_006092272.1 2510293 R 536056 CDS YP_006092273.1 386595873 12705944 complement(2510652..2510876) 1 NC_017625.1 TIGRFAM: phage shock protein B; PFAM: shock B family protein; KEGG: sdy:SDY_1939 phage shock protein B; phage shock protein B 2510876 12705944 EcDH1_2341 Escherichia coli DH1 phage shock protein B YP_006092273.1 2510652 R 536056 CDS YP_006092274.1 386595874 12705945 complement(2510930..2511598) 1 NC_017625.1 TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: sbc:SbBS512_E1540 phage shock protein A; phage shock protein A, PspA 2511598 12705945 EcDH1_2342 Escherichia coli DH1 phage shock protein A, PspA YP_006092274.1 2510930 R 536056 CDS YP_006092275.1 386595875 12705946 2511765..2512742 1 NC_017625.1 KEGG: sbc:SbBS512_E1539 sigma-54 dependent transcriptional regulator PspF; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; sigma54 specific transcriptional acivator, PspF, Fis family 2512742 12705946 EcDH1_2343 Escherichia coli DH1 sigma54 specific transcriptional acivator, PspF, Fis family YP_006092275.1 2511765 D 536056 CDS YP_006092276.1 386595876 12705947 complement(2512862..2514127) 1 NC_017625.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: sbo:SBO_1760 GabA aminotransferase, PLP-dependent; 4-aminobutyrate aminotransferase 2514127 12705947 EcDH1_2344 Escherichia coli DH1 4-aminobutyrate aminotransferase YP_006092276.1 2512862 R 536056 CDS YP_006092277.1 386595877 12705948 complement(2514165..2515445) 1 NC_017625.1 PFAM: FAD dependent oxidoreductase; KEGG: ssn:SSON_1839 probable oxidoreductase; FAD dependent oxidoreductase 2515445 12705948 EcDH1_2345 Escherichia coli DH1 FAD dependent oxidoreductase YP_006092277.1 2514165 R 536056 CDS YP_006092278.1 386595878 12705949 complement(2515447..2516934) 1 NC_017625.1 PFAM: Aldehyde Dehydrogenase; KEGG: sfv:SFV_1314 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; aldehyde dehydrogenase 2516934 12705949 EcDH1_2346 Escherichia coli DH1 aldehyde dehydrogenase YP_006092278.1 2515447 R 536056 CDS YP_006092279.1 386595879 12705950 complement(2517209..2517766) 1 NC_017625.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sdy:SDY_1945 DNA-binding transcriptional repressor; XRE family transcriptional regulator 2517766 12705950 EcDH1_2347 Escherichia coli DH1 XRE family transcriptional regulator YP_006092279.1 2517209 R 536056 CDS YP_006092280.1 386595880 12705951 complement(2517793..2518557) 1 NC_017625.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: ssn:SSON_1842 gamma-glutamyl-gamma-aminobutyrate hydrolase; peptidase C26 2518557 12705951 EcDH1_2348 Escherichia coli DH1 peptidase C26 YP_006092280.1 2517793 R 536056 CDS YP_006092281.1 386595881 12705952 2518769..2520187 1 NC_017625.1 PFAM: glutamine synthetase catalytic region; KEGG: sfx:S1384 putative glutamine synthetase; glutamine synthetase 2520187 12705952 EcDH1_2349 Escherichia coli DH1 glutamine synthetase YP_006092281.1 2518769 D 536056 CDS YP_006092282.1 386595882 12705953 2520490..2521875 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sbo:SBO_1766 putative amino acid/amine transport protein; amino acid permease 2521875 12705953 EcDH1_2350 Escherichia coli DH1 amino acid permease YP_006092282.1 2520490 D 536056 CDS YP_006092283.1 386595883 12705954 2522009..2522254 1 NC_017625.1 KEGG: ssn:SSON_1845 hypothetical protein; hypothetical protein 2522254 12705954 EcDH1_2351 Escherichia coli DH1 hypothetical protein YP_006092283.1 2522009 D 536056 CDS YP_006092284.1 386595884 12705955 2522567..2524210 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbc:SbBS512_E1530 peptide ABC transporter, periplasmic peptide-binding protein; family 5 extracellular solute-binding protein 2524210 12705955 EcDH1_2352 Escherichia coli DH1 family 5 extracellular solute-binding protein YP_006092284.1 2522567 D 536056 CDS YP_006092285.1 386595885 12705956 2524207..2525172 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E1529 peptide ABC transporter, permease protein SapB; binding-protein-dependent transport system inner membrane protein 2525172 12705956 EcDH1_2353 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092285.1 2524207 D 536056 CDS YP_006092286.1 386595886 12705957 2525159..2526049 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E1528 peptide ABC transporter, permease protein SapC; binding-protein-dependent transport system inner membrane protein 2526049 12705957 EcDH1_2354 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092286.1 2525159 D 536056 CDS YP_006092287.1 386595887 12705958 2526049..2527041 1 NC_017625.1 KEGG: sbc:SbBS512_E1527 peptide ABC transporter, ATP-binding protein SapD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2527041 12705958 EcDH1_2355 Escherichia coli DH1 oligopeptide/dipeptide ABC transporter ATPase YP_006092287.1 2526049 D 536056 CDS YP_006092288.1 386595888 12705959 2527043..2527849 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E1526 peptide ABC transporter, ATP-binding protein SapF; ABC transporter 2527849 12705959 EcDH1_2356 Escherichia coli DH1 ABC transporter YP_006092288.1 2527043 D 536056 CDS YP_006092289.1 386595889 12705960 2527917..2528270 1 NC_017625.1 PFAM: protein of unknown function DUF559; KEGG: sbo:SBO_1773 hypothetical protein; hypothetical protein 2528270 12705960 EcDH1_2357 Escherichia coli DH1 hypothetical protein YP_006092289.1 2527917 D 536056 CDS YP_006092290.1 386595890 12705961 2528638..2529426 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_1774 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 2529426 12705961 EcDH1_2358 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006092290.1 2528638 D 536056 CDS YP_006092291.1 386595891 12705962 2529570..2530697 1 NC_017625.1 KEGG: sfv:SFV_1301 putative oxidoreductase; putative oxidoreductase 2530697 12705962 EcDH1_2359 Escherichia coli DH1 putative oxidoreductase YP_006092291.1 2529570 D 536056 CDS YP_006092292.1 386595892 12705963 2530765..2532699 1 NC_017625.1 KEGG: sbc:SbBS512_E1520 exoribonuclease II; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; exoribonuclease II; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; exoribonuclease II 2532699 12705963 EcDH1_2360 Escherichia coli DH1 exoribonuclease II YP_006092292.1 2530765 D 536056 CDS YP_006092293.1 386595893 12705964 2532935..2534920 1 NC_017625.1 KEGG: sbo:SBO_1779 RNase II stability modulator; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2534920 12705964 EcDH1_2361 Escherichia coli DH1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_006092293.1 2532935 D 536056 CDS YP_006092294.1 386595894 12705965 2535068..2535241 1 NC_017625.1 KEGG: sdy:SDY_1362 hypothetical protein; hypothetical protein 2535241 12705965 EcDH1_2362 Escherichia coli DH1 hypothetical protein YP_006092294.1 2535068 D 536056 CDS YP_006092295.1 386595895 12705966 2535331..2536080 1 NC_017625.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sdy:SDY_1361 putative DeoR-type transcriptional regulator; DeoR family transcriptional regulator 2536080 12705966 EcDH1_2363 Escherichia coli DH1 DeoR family transcriptional regulator YP_006092295.1 2535331 D 536056 CDS YP_006092296.1 386595896 12705967 2536349..2536567 1 NC_017625.1 KEGG: sbc:SbBS512_E1514 osmotically inducible lipoprotein B; osmotically inducible lipoprotein B 2536567 12705967 EcDH1_2364 Escherichia coli DH1 osmotically inducible lipoprotein B YP_006092296.1 2536349 D 536056 CDS YP_006092297.1 386595897 12705968 complement(2536693..2537019) 1 NC_017625.1 PFAM: translation initiation factor SUI1; KEGG: ssn:SSON_1858 translation initiation factor SUI1; translation initiation factor SUI1 2537019 12705968 EcDH1_2365 Escherichia coli DH1 translation initiation factor SUI1 YP_006092297.1 2536693 R 536056 CDS YP_006092298.1 386595898 12705969 complement(2537019..2537816) 1 NC_017625.1 KEGG: ssn:SSON_1859 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2537816 12705969 EcDH1_2366 Escherichia coli DH1 orotidine 5'-phosphate decarboxylase YP_006092298.1 2537019 R 536056 CDS YP_006092299.1 386595899 12705970 complement(2537950..2539119) 1 NC_017625.1 SMART: Tetratricopeptide domain protein; KEGG: sbc:SbBS512_E1508 tetratricopeptide repeat protein; hypothetical protein 2539119 12705970 EcDH1_2367 Escherichia coli DH1 hypothetical protein YP_006092299.1 2537950 R 536056 CDS YP_006092300.1 386595900 12705971 complement(2539126..2539434) 1 NC_017625.1 PFAM: protein of unknown function DUF1049; KEGG: sbc:SbBS512_E1507 hypothetical protein; hypothetical protein 2539434 12705971 EcDH1_2368 Escherichia coli DH1 hypothetical protein YP_006092300.1 2539126 R 536056 CDS YP_006092301.1 386595901 12705972 complement(2539583..2540347) 1 NC_017625.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sdy:SDY_1354 phosphatidylglycerophosphatase B; Phosphatidylglycerophosphatase 2540347 12705972 EcDH1_2369 Escherichia coli DH1 Phosphatidylglycerophosphatase YP_006092301.1 2539583 R 536056 CDS YP_006092302.1 386595902 12705973 2540517..2541107 1 NC_017625.1 PFAM: GTP cyclohydrolase II; KEGG: sbo:SBO_1787 GTP cyclohydrolase II; GTP cyclohydrolase II 2541107 12705973 EcDH1_2370 Escherichia coli DH1 GTP cyclohydrolase II YP_006092302.1 2540517 D 536056 CDS YP_006092303.1 386595903 12705974 complement(2541171..2543846) 1 NC_017625.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: sfv:SFV_1289 aconitate hydratase; aconitate hydratase 1 2543846 12705974 EcDH1_2371 Escherichia coli DH1 aconitate hydratase 1 YP_006092303.1 2541171 R 536056 CDS YP_006092304.1 386595904 12705975 complement(2544219..2544386) 1 NC_017625.1 KEGG: sbc:SbBS512_E1503 hypothetical protein; hypothetical protein 2544386 12705975 EcDH1_2372 Escherichia coli DH1 hypothetical protein YP_006092304.1 2544219 R 536056 CDS YP_006092305.1 386595905 12705976 complement(2544389..2544517) 1 NC_017625.1 KEGG: sdy:SDY_1348 hypothetical protein; hypothetical protein 2544517 12705976 EcDH1_2373 Escherichia coli DH1 hypothetical protein YP_006092305.1 2544389 R 536056 CDS YP_006092306.1 386595906 12705977 complement(2544848..2545822) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E1501 HTH-type transcriptional regulator CysB; LysR family transcriptional regulator 2545822 12705977 EcDH1_2374 Escherichia coli DH1 LysR family transcriptional regulator YP_006092306.1 2544848 R 536056 CDS YP_006092307.1 386595907 12705978 complement(2546032..2548629) 1 NC_017625.1 KEGG: sbo:SBO_1792 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase I zinc ribbon domain protein ; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 2548629 12705978 EcDH1_2375 Escherichia coli DH1 DNA topoisomerase I YP_006092307.1 2546032 R 536056 CDS YP_006092308.1 386595908 12705979 2549009..2549260 1 NC_017625.1 KEGG: sdy:SDY_1343 hypothetical protein; hypothetical protein 2549260 12705979 EcDH1_2376 Escherichia coli DH1 hypothetical protein YP_006092308.1 2549009 D 536056 CDS YP_006092309.1 386595909 12705980 complement(2549296..2550345) 1 NC_017625.1 PFAM: peptidase S49; Peptidase S49 domain protein; KEGG: ssn:SSON_1871 predicted inner membrane peptidase; Peptidase S49 domain protein 2550345 12705980 EcDH1_2377 Escherichia coli DH1 Peptidase S49 domain protein YP_006092309.1 2549296 R 536056 CDS YP_006092310.1 386595910 12705981 2550565..2551323 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ssn:SSON_1872 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2551323 12705981 EcDH1_2378 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006092310.1 2550565 D 536056 CDS YP_006092311.1 386595911 12705982 2551320..2551910 1 NC_017625.1 KEGG: ssn:SSON_1873 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2551910 12705982 EcDH1_2379 Escherichia coli DH1 cob(I)alamin adenosyltransferase YP_006092311.1 2551320 D 536056 CDS YP_006092312.1 386595912 12705983 complement(2551950..2552825) 1 NC_017625.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sbo:SBO_1797 23S rRNA pseudouridylate synthase B; pseudouridine synthase 2552825 12705983 EcDH1_2380 Escherichia coli DH1 pseudouridine synthase YP_006092312.1 2551950 R 536056 CDS YP_006092313.1 386595913 12705984 complement(2553036..2554931) 1 NC_017625.1 KEGG: sbc:SbBS512_E1492 hypothetical protein; hypothetical protein 2554931 12705984 EcDH1_2381 Escherichia coli DH1 hypothetical protein YP_006092313.1 2553036 R 536056 CDS YP_006092314.1 386595914 12705985 complement(2554959..2555579) 1 NC_017625.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sbc:SbBS512_E1491 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 2555579 12705985 EcDH1_2382 Escherichia coli DH1 Sua5/YciO/YrdC/YwlC family protein YP_006092314.1 2554959 R 536056 CDS YP_006092315.1 386595915 12705986 complement(2555576..2556457) 1 NC_017625.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sfx:S1354 putative enzyme; PHP domain-containing protein 2556457 12705986 EcDH1_2383 Escherichia coli DH1 PHP domain-containing protein YP_006092315.1 2555576 R 536056 CDS YP_006092316.1 386595916 12705987 2556731..2558293 1 NC_017625.1 TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: sfv:SFV_1278 anthranilate synthase component I; anthranilate synthase component I 2558293 12705987 EcDH1_2384 Escherichia coli DH1 anthranilate synthase component I YP_006092316.1 2556731 D 536056 CDS YP_006092317.1 386595917 12705988 2558293..2559888 1 NC_017625.1 TIGRFAM: anthranilate phosphoribosyltransferase; glutamine amidotransferase of anthranilate synthase; PFAM: glycosyl transferase family 3; glutamine amidotransferase class-I; Glycosyl transferase, family 3-like; KEGG: ssn:SSON_1880 bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase 2559888 12705988 EcDH1_2385 Escherichia coli DH1 anthranilate phosphoribosyltransferase YP_006092317.1 2558293 D 536056 CDS YP_006092318.1 386595918 12705989 2559892..2561250 1 NC_017625.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Indole-3-glycerol phosphate synthase; KEGG: sbc:SbBS512_E1487 tryptophan biosynthesis protein trpCF; Indole-3-glycerol-phosphate synthase., Phosphoribosylanthranilate isomerase 2561250 12705989 EcDH1_2386 Escherichia coli DH1 Indole-3-glycerol-phosphate synthase., Phosphoribosylanthranilate isomerase YP_006092318.1 2559892 D 536056 CDS YP_006092319.1 386595919 12705990 2561262..2562455 1 NC_017625.1 TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sfv:SFV_1275 tryptophan synthase subunit beta; tryptophan synthase subunit beta 2562455 12705990 EcDH1_2387 Escherichia coli DH1 tryptophan synthase subunit beta YP_006092319.1 2561262 D 536056 CDS YP_006092320.1 386595920 12705991 2562455..2563261 1 NC_017625.1 KEGG: sfx:S1349 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 2563261 12705991 EcDH1_2388 Escherichia coli DH1 tryptophan synthase subunit alpha YP_006092320.1 2562455 D 536056 CDS YP_006092321.1 386595921 12705992 2563642..2563821 1 NC_017625.1 KEGG: sfv:SFV_1273 hypothetical protein; hypothetical protein 2563821 12705992 EcDH1_2389 Escherichia coli DH1 hypothetical protein YP_006092321.1 2563642 D 536056 CDS YP_006092322.1 386595922 12705993 2563907..2564407 1 NC_017625.1 PFAM: protein of unknown function DUF892; KEGG: sfv:SFV_1272 putative structural protein; hypothetical protein 2564407 12705993 EcDH1_2390 Escherichia coli DH1 hypothetical protein YP_006092322.1 2563907 D 536056 CDS YP_006092323.1 386595923 12705994 2564453..2564959 1 NC_017625.1 PFAM: protein of unknown function DUF892; KEGG: sfv:SFV_1271 hypothetical protein; hypothetical protein 2564959 12705994 EcDH1_2391 Escherichia coli DH1 hypothetical protein YP_006092323.1 2564453 D 536056 CDS YP_006092324.1 386595924 12705995 complement(2565019..2565657) 1 NC_017625.1 PFAM: OmpW family protein; KEGG: sbo:SBO_1809 outer membrane protein W; OmpW family protein 2565657 12705995 EcDH1_2392 Escherichia coli DH1 OmpW family protein YP_006092324.1 2565019 R 536056 CDS YP_006092325.1 386595925 12705996 2566014..2566757 1 NC_017625.1 PFAM: protein of unknown function UPF0259; KEGG: ssn:SSON_1911 hypothetical protein; hypothetical protein 2566757 12705996 EcDH1_2393 Escherichia coli DH1 hypothetical protein YP_006092325.1 2566014 D 536056 CDS YP_006092326.1 386595926 12705997 2566787..2567326 1 NC_017625.1 TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: sbc:SbBS512_E1423 intracellular septation protein A; intracellular septation protein A 2567326 12705997 EcDH1_2394 Escherichia coli DH1 intracellular septation protein A YP_006092326.1 2566787 D 536056 CDS YP_006092327.1 386595927 12705998 2567431..2567829 1 NC_017625.1 PFAM: thioesterase superfamily protein; KEGG: sdy:SDY_1317 predicted hydrolase; thioesterase superfamily protein 2567829 12705998 EcDH1_2395 Escherichia coli DH1 thioesterase superfamily protein YP_006092327.1 2567431 D 536056 CDS YP_006092328.1 386595928 12705999 complement(2567869..2568603) 1 NC_017625.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sbo:SBO_1813 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; TonB family protein 2568603 12705999 EcDH1_2396 Escherichia coli DH1 TonB family protein YP_006092328.1 2567869 R 536056 CDS YP_006092329.1 386595929 12706000 2568812..2569108 1 NC_017625.1 PFAM: YCII-related; KEGG: sbo:SBO_1814 YciI-like protein; hypothetical protein 2569108 12706000 EcDH1_2397 Escherichia coli DH1 hypothetical protein YP_006092329.1 2568812 D 536056 CDS YP_006092330.1 386595930 12706001 2569408..2570661 1 NC_017625.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: sbo:SBO_1817 voltage-gated potassium channel; TrkA-N domain-containing protein 2570661 12706001 EcDH1_2398 Escherichia coli DH1 TrkA-N domain-containing protein YP_006092330.1 2569408 D 536056 CDS YP_006092331.1 386595931 12706002 2571032..2572492 1 NC_017625.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: ssn:SSON_1931 cardiolipin synthetase; phospholipase D/Transphosphatidylase 2572492 12706002 EcDH1_2399 Escherichia coli DH1 phospholipase D/Transphosphatidylase YP_006092331.1 2571032 D 536056 CDS YP_006092332.1 386595932 12706003 2572527..2572856 1 NC_017625.1 PFAM: protein of unknown function DUF440; KEGG: sdy:SDY_1306 dsDNA-mimic protein; hypothetical protein 2572856 12706003 EcDH1_2400 Escherichia coli DH1 hypothetical protein YP_006092332.1 2572527 D 536056 CDS YP_006092333.1 386595933 12706004 complement(2572909..2573913) 1 NC_017625.1 KEGG: sfv:SFV_1259 ATP-binding protein of oligopeptide ABC transport system; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2573913 12706004 EcDH1_2401 Escherichia coli DH1 oligopeptide/dipeptide ABC transporter ATPase YP_006092333.1 2572909 R 536056 CDS YP_006092334.1 386595934 12706005 complement(2573910..2574923) 1 NC_017625.1 KEGG: sbc:SbBS512_E1415 oligopeptide ABC transporter, ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2574923 12706005 EcDH1_2402 Escherichia coli DH1 oligopeptide/dipeptide ABC transporter ATPase YP_006092334.1 2573910 R 536056 CDS YP_006092335.1 386595935 12706006 complement(2574935..2575843) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1935 oligopeptide transport permease protein-like protein; binding-protein-dependent transport system inner membrane protein 2575843 12706006 EcDH1_2403 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092335.1 2574935 R 536056 CDS YP_006092336.1 386595936 12706007 complement(2575858..2576778) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1823 oligopeptide transporter permease; alkaline phosphatase 2576778 12706007 EcDH1_2404 Escherichia coli DH1 alkaline phosphatase YP_006092336.1 2575858 R 536056 CDS YP_006092337.1 386595937 12706008 complement(2576864..2578540) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbo:SBO_1824 oligopeptide transport periplasmic binding protein; family 5 extracellular solute-binding protein 2578540 12706008 EcDH1_2405 Escherichia coli DH1 family 5 extracellular solute-binding protein YP_006092337.1 2576864 R 536056 CDS YP_006092338.1 386595938 12706009 2578779..2579075 1 NC_017625.1 hypothetical protein 2579075 12706009 EcDH1_2406 Escherichia coli DH1 hypothetical protein YP_006092338.1 2578779 D 536056 CDS YP_006092339.1 386595939 12706010 complement(2579051..2579206) 1 NC_017625.1 hypothetical protein 2579206 12706010 EcDH1_2407 Escherichia coli DH1 hypothetical protein YP_006092339.1 2579051 R 536056 CDS YP_006092340.1 386595940 12706011 complement(2579233..2579880) 1 NC_017625.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ssn:SSON_1938 hypothetical protein; multiple antibiotic resistance (MarC)-like protein 2579880 12706011 EcDH1_2408 Escherichia coli DH1 multiple antibiotic resistance (MarC)-like protein YP_006092340.1 2579233 R 536056 CDS YP_006092341.1 386595941 12706012 2580357..2583032 1 NC_017625.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: sdy:SDY_1295 CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase/pyruvate-formate-lyase deactivase; iron-containing alcohol dehydrogenase 2583032 12706012 EcDH1_2409 Escherichia coli DH1 iron-containing alcohol dehydrogenase YP_006092341.1 2580357 D 536056 CDS YP_006092342.1 386595942 12706014 complement(2584334..2584951) 1 NC_017625.1 PFAM: thymidine kinase; KEGG: sbo:SBO_1831 thymidine kinase; thymidine kinase 2584951 12706014 EcDH1_2411 Escherichia coli DH1 thymidine kinase YP_006092342.1 2584334 R 536056 CDS YP_006092343.1 386595943 12706015 2585556..2585969 1 NC_017625.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sdy:SDY_1289 global DNA-binding transcriptional dual regulator H-NS; histone family protein nucleoid-structuring protein H-NS 2585969 12706015 EcDH1_2412 Escherichia coli DH1 histone family protein nucleoid-structuring protein H-NS YP_006092343.1 2585556 D 536056 CDS YP_006092344.1 386595944 12706016 complement(2586113..2587021) 1 NC_017625.1 KEGG: sdy:SDY_1288 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 2587021 12706016 EcDH1_2413 Escherichia coli DH1 UTP-glucose-1-phosphate uridylyltransferase YP_006092344.1 2586113 R 536056 CDS YP_006092345.1 386595945 12706018 complement(2588328..2589272) 1 NC_017625.1 PFAM: Patatin; KEGG: ssn:SSON_1945 hypothetical protein; patatin 2589272 12706018 EcDH1_2415 Escherichia coli DH1 patatin YP_006092345.1 2588328 R 536056 CDS YP_006092346.1 386595946 12706019 2589346..2589804 1 NC_017625.1 PFAM: SEC-C motif domain protein; KEGG: sbc:SbBS512_E1398 sec-C motif domain protein; SEC-C motif domain-containing protein 2589804 12706019 EcDH1_2416 Escherichia coli DH1 SEC-C motif domain-containing protein YP_006092346.1 2589346 D 536056 CDS YP_006092347.1 386595947 12706020 2589854..2590696 1 NC_017625.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: sbo:SBO_1837 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 2590696 12706020 EcDH1_2417 Escherichia coli DH1 formyltetrahydrofolate deformylase YP_006092347.1 2589854 D 536056 CDS YP_006092348.1 386595948 12706023 complement(2591952..2592629) 1 NC_017625.1 KEGG: sbc:SbBS512_E1395 respiratory nitrate reductase 1, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 2592629 12706023 EcDH1_2418 Escherichia coli DH1 respiratory nitrate reductase subunit gamma YP_006092348.1 2591952 R 536056 CDS YP_006092349.1 386595949 12706024 complement(2592629..2593339) 1 NC_017625.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: sdy:SDY_1281 nitrate reductase 1, delta subunit, assembly function; nitrate reductase molybdenum cofactor assembly chaperone 2593339 12706024 EcDH1_2419 Escherichia coli DH1 nitrate reductase molybdenum cofactor assembly chaperone YP_006092349.1 2592629 R 536056 CDS YP_006092350.1 386595950 12706025 complement(2593336..2594874) 1 NC_017625.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: sfv:SFV_1241 nitrate reductase 1, beta subunit; nitrate reductase subunit beta 2594874 12706025 EcDH1_2420 Escherichia coli DH1 nitrate reductase subunit beta YP_006092350.1 2593336 R 536056 CDS YP_006092351.1 386595951 12706027 complement(2599130..2600521) 1 NC_017625.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1391 nitrite extrusion protein 1; nitrite transporter 2600521 12706027 EcDH1_2422 Escherichia coli DH1 nitrite transporter YP_006092351.1 2599130 R 536056 CDS YP_006092352.1 386595952 12706028 complement(2600616..2600834) 1 NC_017625.1 KEGG: sbc:SbBS512_E1390 hypothetical protein; hypothetical protein 2600834 12706028 EcDH1_2423 Escherichia coli DH1 hypothetical protein YP_006092352.1 2600616 R 536056 CDS YP_006092353.1 386595953 12706029 2600860..2602656 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sfv:SFV_1238 nitrate/nitrite sensor protein NarX; histidine kinase 2602656 12706029 EcDH1_2424 Escherichia coli DH1 histidine kinase YP_006092353.1 2600860 D 536056 CDS YP_006092354.1 386595954 12706030 2602649..2603299 1 NC_017625.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sdy:SDY_1275 DNA-binding response regulator in two-component regulatory system with NarX (or NarQ); LuxR family two component transcriptional regulator 2603299 12706030 EcDH1_2425 Escherichia coli DH1 LuxR family two component transcriptional regulator YP_006092354.1 2602649 D 536056 CDS YP_006092355.1 386595955 12706031 complement(2603300..2604694) 1 NC_017625.1 KEGG: sbc:SbBS512_E1387 putative invasin; putative invasin 2604694 12706031 EcDH1_2426 Escherichia coli DH1 putative invasin YP_006092355.1 2603300 R 536056 CDS YP_006092356.1 386595956 12706032 2604879..2605232 1 NC_017625.1 PFAM: DsrE family protein; KEGG: sdy:SDY_1271 hypothetical protein; DsrE family protein 2605232 12706032 EcDH1_2427 Escherichia coli DH1 DsrE family protein YP_006092356.1 2604879 D 536056 CDS YP_006092357.1 386595957 12706033 complement(2605276..2605992) 1 NC_017625.1 PFAM: ChaC family protein; KEGG: sfv:SFV_1234 cation transport regulator; ChaC family protein 2605992 12706033 EcDH1_2428 Escherichia coli DH1 ChaC family protein YP_006092357.1 2605276 R 536056 CDS YP_006092358.1 386595958 12706034 complement(2606129..2606359) 1 NC_017625.1 PFAM: ChaB family protein; KEGG: sdy:SDY_1269 cation transport regulator; ChaB family protein 2606359 12706034 EcDH1_2429 Escherichia coli DH1 ChaB family protein YP_006092358.1 2606129 R 536056 CDS YP_006092359.1 386595959 12706035 2606629..2607729 1 NC_017625.1 TIGRFAM: calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; KEGG: sdy:SDY_1266 calcium/sodium:proton antiporter; calcium/proton exchanger 2607729 12706035 EcDH1_2430 Escherichia coli DH1 calcium/proton exchanger YP_006092359.1 2606629 D 536056 CDS YP_006092360.1 386595960 12706036 2608668..2608775 1 NC_017625.1 KEGG: sbo:SBO_1851 hypothetical protein; hypothetical protein 2608775 12706036 EcDH1_2431 Escherichia coli DH1 hypothetical protein YP_006092360.1 2608668 D 536056 CDS YP_006092361.1 386595961 12706037 complement(2609459..2610313) 1 NC_017625.1 TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: sdy:SDY_1264 2-dehydro-3-deoxyphosphooctonate aldolase; 2-dehydro-3-deoxyphosphooctonate aldolase 2610313 12706037 EcDH1_2432 Escherichia coli DH1 2-dehydro-3-deoxyphosphooctonate aldolase YP_006092361.1 2609459 R 536056 CDS YP_006092362.1 386595962 12706038 complement(2610349..2611158) 1 NC_017625.1 KEGG: sbc:SbBS512_E1378 sirB1 protein; sirB1 protein 2611158 12706038 EcDH1_2433 Escherichia coli DH1 sirB1 protein YP_006092362.1 2610349 R 536056 CDS YP_006092363.1 386595963 12706039 complement(2611162..2611554) 1 NC_017625.1 PFAM: Invasion gene expression up-regulator SirB; KEGG: sdy:SDY_1262 putative transcriptional regulator; Invasion gene expression up-regulator SirB 2611554 12706039 EcDH1_2434 Escherichia coli DH1 Invasion gene expression up-regulator SirB YP_006092363.1 2611162 R 536056 CDS YP_006092364.1 386595964 12706040 complement(2611551..2612384) 1 NC_017625.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: sbc:SbBS512_E1376 protein-(glutamine-N5) methyltransferase, release factor-specific; HemK family modification methylase 2612384 12706040 EcDH1_2435 Escherichia coli DH1 HemK family modification methylase YP_006092364.1 2611551 R 536056 CDS YP_006092365.1 386595965 12706041 complement(2612384..2613466) 1 NC_017625.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sdy:SDY_1260 peptide chain release factor 1; peptide chain release factor 1 2613466 12706041 EcDH1_2436 Escherichia coli DH1 peptide chain release factor 1 YP_006092365.1 2612384 R 536056 CDS YP_006092366.1 386595966 12706042 complement(2613508..2614764) 1 NC_017625.1 KEGG: sdy:SDY_1259 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 2614764 12706042 EcDH1_2437 Escherichia coli DH1 glutamyl-tRNA reductase YP_006092366.1 2613508 R 536056 CDS YP_006092367.1 386595967 12706043 2614978..2615601 1 NC_017625.1 PFAM: outer membrane lipoprotein LolB; KEGG: sbo:SBO_1858 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 2615601 12706043 EcDH1_2438 Escherichia coli DH1 outer membrane lipoprotein LolB YP_006092367.1 2614978 D 536056 CDS YP_006092368.1 386595968 12706044 2615601..2616452 1 NC_017625.1 KEGG: sbc:SbBS512_E1372 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2616452 12706044 EcDH1_2439 Escherichia coli DH1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_006092368.1 2615601 D 536056 CDS YP_006092369.1 386595969 12706045 2616537..2617550 1 NC_017625.1 KEGG: sec:SC1774 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 2617550 12706045 EcDH1_2440 Escherichia coli DH1 ribose-phosphate pyrophosphokinase YP_006092369.1 2616537 D 536056 CDS YP_006092370.1 386595970 12706046 2617702..2619354 1 NC_017625.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sdy:SDY_1255 putative sulfate transporter YchM; sulfate transporter 2619354 12706046 EcDH1_2441 Escherichia coli DH1 sulfate transporter YP_006092370.1 2617702 D 536056 CDS YP_006092371.1 386595971 12706047 complement(2619409..2619687) 1 NC_017625.1 KEGG: sbc:SbBS512_E1369 hypothetical protein; hypothetical protein 2619687 12706047 EcDH1_2442 Escherichia coli DH1 hypothetical protein YP_006092371.1 2619409 R 536056 CDS YP_006092372.1 386595972 12706048 2619965..2620549 1 NC_017625.1 PFAM: peptidyl-tRNA hydrolase; KEGG: ssn:SSON_1974 peptidyl-tRNA hydrolase; Aminoacyl-tRNA hydrolase 2620549 12706048 EcDH1_2443 Escherichia coli DH1 Aminoacyl-tRNA hydrolase YP_006092372.1 2619965 D 536056 CDS YP_006092373.1 386595973 12706049 2620666..2621757 1 NC_017625.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: sdy:SDY_1252 translation-associated GTPase; GTP-binding protein YchF 2621757 12706049 EcDH1_2444 Escherichia coli DH1 GTP-binding protein YchF YP_006092373.1 2620666 D 536056 CDS YP_006092374.1 386595974 12706050 complement(2622002..2622181) 1 NC_017625.1 KEGG: sbc:SbBS512_E1366 hypothetical protein; hypothetical protein 2622181 12706050 EcDH1_2445 Escherichia coli DH1 hypothetical protein YP_006092374.1 2622002 R 536056 CDS YP_006092375.1 386595975 12706051 2622526..2625393 1 NC_017625.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sfx:S1289 putative adhesion and penetration protein; outer membrane autotransporter barrel domain-containing protein 2625393 12706051 EcDH1_2446 Escherichia coli DH1 outer membrane autotransporter barrel domain-containing protein YP_006092375.1 2622526 D 536056 CDS YP_006092376.1 386595976 12706052 complement(2625493..2627412) 1 NC_017625.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: sfx:S1288 DNA-binding transcriptional regulator DhaR; GAF modulated Fis family sigma-54 specific transcriptional regulator 2627412 12706052 EcDH1_2447 Escherichia coli DH1 GAF modulated Fis family sigma-54 specific transcriptional regulator YP_006092376.1 2625493 R 536056 CDS YP_006092377.1 386595977 12706053 2627640..2628710 1 NC_017625.1 KEGG: sbc:SbBS512_E1359 PTS-dependent dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase; dihydroxyacetone kinase subunit DhaK 2628710 12706053 EcDH1_2448 Escherichia coli DH1 dihydroxyacetone kinase subunit DhaK YP_006092377.1 2627640 D 536056 CDS YP_006092378.1 386595978 12706054 2628721..2629353 1 NC_017625.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: sbc:SbBS512_E1358 PTS-dependent dihydroxyacetone kinase, DhaL subunit; dihydroxyacetone kinase subunit DhaL 2629353 12706054 EcDH1_2449 Escherichia coli DH1 dihydroxyacetone kinase subunit DhaL YP_006092378.1 2628721 D 536056 CDS YP_006092379.1 386595979 12706055 2629364..2630782 1 NC_017625.1 TIGRFAM: phosphocarrier, HPr family; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: sbc:SbBS512_E1357 PTS-dependent dihydroxyacetone kinase, DhaM subunit; dihydroxyacetone kinase, phosphotransfer subunit 2630782 12706055 EcDH1_2450 Escherichia coli DH1 dihydroxyacetone kinase, phosphotransfer subunit YP_006092379.1 2629364 D 536056 CDS YP_006092380.1 386595980 12706056 2631102..2632799 1 NC_017625.1 PFAM: glycoside hydrolase family 37; KEGG: sfv:SFV_1211 trehalase; Alpha,alpha-trehalase 2632799 12706056 EcDH1_2451 Escherichia coli DH1 Alpha,alpha-trehalase YP_006092380.1 2631102 D 536056 CDS YP_006092381.1 386595981 12706057 complement(2632878..2633246) 1 NC_017625.1 KEGG: sbc:SbBS512_E1354 hypothetical protein; hypothetical protein 2633246 12706057 EcDH1_2452 Escherichia coli DH1 hypothetical protein YP_006092381.1 2632878 R 536056 CDS YP_006092382.1 386595982 12706058 complement(2633496..2633750) 1 NC_017625.1 PFAM: Transglycosylase-associated protein; KEGG: grail3.3416000201.; transglycosylase 2633750 12706058 EcDH1_2453 Escherichia coli DH1 transglycosylase YP_006092382.1 2633496 R 536056 CDS YP_006092383.1 386595983 12706059 2633951..2634685 1 NC_017625.1 PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: sbo:SBO_1878 hypothetical protein; YcgR family protein 2634685 12706059 EcDH1_2454 Escherichia coli DH1 YcgR family protein YP_006092383.1 2633951 D 536056 CDS YP_006092384.1 386595984 12706060 complement(2634687..2635298) 1 NC_017625.1 PFAM: Lytic transglycosylase catalytic; KEGG: ssn:SSON_1184 murein transglycosylase E; lytic transglycosylase 2635298 12706060 EcDH1_2455 Escherichia coli DH1 lytic transglycosylase YP_006092384.1 2634687 R 536056 CDS YP_006092385.1 386595985 12706061 2635398..2636312 1 NC_017625.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: ssn:SSON_1185 L,D-carboxypeptidase A; Muramoyltetrapeptide carboxypeptidase 2636312 12706061 EcDH1_2456 Escherichia coli DH1 Muramoyltetrapeptide carboxypeptidase YP_006092385.1 2635398 D 536056 CDS YP_006092386.1 386595986 12706062 2636407..2638143 1 NC_017625.1 PFAM: transporter-associated region; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: sbc:SbBS512_E1349 cell volume regulation protein A; sodium/hydrogen exchanger 2638143 12706062 EcDH1_2457 Escherichia coli DH1 sodium/hydrogen exchanger YP_006092386.1 2636407 D 536056 CDS YP_006092387.1 386595987 12706063 complement(2638529..2639599) 1 NC_017625.1 KEGG: sfv:SFV_1197 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 2639599 12706063 EcDH1_2458 Escherichia coli DH1 alanine racemase YP_006092387.1 2638529 R 536056 CDS YP_006092388.1 386595988 12706064 complement(2639609..2640907) 1 NC_017625.1 PFAM: FAD dependent oxidoreductase; KEGG: ssn:SSON_1181 D-amino acid dehydrogenase small subunit; Methylated-DNA--(protein)-cysteine S-methyltransferase 2640907 12706064 EcDH1_2459 Escherichia coli DH1 Methylated-DNA--(protein)-cysteine S-methyltransferase YP_006092388.1 2639609 R 536056 CDS YP_006092389.1 386595989 12706065 2641237..2642769 1 NC_017625.1 PFAM: SpoVR family protein; KEGG: ssn:SSON_1180 hypothetical protein; SpoVR family protein 2642769 12706065 EcDH1_2460 Escherichia coli DH1 SpoVR family protein YP_006092389.1 2641237 D 536056 CDS YP_006092390.1 386595990 12706066 complement(2642821..2643540) 1 NC_017625.1 TIGRFAM: fatty acid metabolism transcriptional regulator FadR; PFAM: regulatory protein GntR HTH; fatty acid responsive transcription factor FadR domain protein; KEGG: sdy:SDY_1224 fatty acid metabolism regulator; fatty acid metabolism transcriptional regulator FadR 2643540 12706066 EcDH1_2461 Escherichia coli DH1 fatty acid metabolism transcriptional regulator FadR YP_006092390.1 2642821 R 536056 CDS YP_006092391.1 386595991 12706067 2643761..2645302 1 NC_017625.1 TIGRFAM: Na+/H+ antiporter NhaB; PFAM: Na+H+ antiporter NhaB; Citrate transporter; KEGG: sdy:SDY_1223 sodium/proton antiporter; Na+/H+ antiporter NhaB 2645302 12706067 EcDH1_2462 Escherichia coli DH1 Na+/H+ antiporter NhaB YP_006092391.1 2643761 D 536056 CDS YP_006092392.1 386595992 12706068 2645448..2645978 1 NC_017625.1 PFAM: Disulphide bond formation protein DsbB; KEGG: sdy:SDY_1222 disulfide bond formation protein B; disulfice bond formation protein DsbB 2645978 12706068 EcDH1_2463 Escherichia coli DH1 disulfice bond formation protein DsbB YP_006092392.1 2645448 D 536056 CDS YP_006092393.1 386595993 12706069 complement(2646024..2647292) 1 NC_017625.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sfv:SFV_1191 DNA polymerase V subunit UmuC; DNA-directed DNA polymerase 2647292 12706069 EcDH1_2464 Escherichia coli DH1 DNA-directed DNA polymerase YP_006092393.1 2646024 R 536056 CDS YP_006092394.1 386595994 12706070 complement(2647292..2647711) 1 NC_017625.1 PFAM: peptidase S24 and S26 domain protein; KEGG: sbc:SbBS512_E1340 protein UmuD; peptidase S24 and S26 domain-containing protein 2647711 12706070 EcDH1_2465 Escherichia coli DH1 peptidase S24 and S26 domain-containing protein YP_006092394.1 2647292 R 536056 CDS YP_006092395.1 386595995 12706071 2648084..2648995 1 NC_017625.1 PFAM: Haemolysin E family protein; KEGG: stt:t1477 hemolysin E; Hemolysin E family protein 2648995 12706071 EcDH1_2466 Escherichia coli DH1 Hemolysin E family protein YP_006092395.1 2648084 D 536056 CDS YP_006092396.1 386595996 12706072 complement(2649202..2649648) 1 NC_017625.1 PFAM: protein of unknown function UPF0153; KEGG: sfv:SFV_1188 hypothetical protein; hypothetical protein 2649648 12706072 EcDH1_2467 Escherichia coli DH1 hypothetical protein YP_006092396.1 2649202 R 536056 CDS YP_006092397.1 386595997 12706073 complement(2649740..2650399) 1 NC_017625.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sbc:SbBS512_E1335 fumarylacetoacetate hydrolase family protein; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 2650399 12706073 EcDH1_2468 Escherichia coli DH1 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_006092397.1 2649740 R 536056 CDS YP_006092398.1 386595998 12706074 complement(2650471..2650764) 1 NC_017625.1 PFAM: protein of unknown function DUF709; KEGG: sbc:SbBS512_E1334 hypothetical protein; hypothetical protein 2650764 12706074 EcDH1_2469 Escherichia coli DH1 hypothetical protein YP_006092398.1 2650471 R 536056 CDS YP_006092399.1 386595999 12706075 2651006..2651407 1 NC_017625.1 PFAM: peptidase domain protein; KEGG: sdy:SDY_1210 hypothetical protein; peptidase domain-containing protein 2651407 12706075 EcDH1_2470 Escherichia coli DH1 peptidase domain-containing protein YP_006092399.1 2651006 D 536056 CDS YP_006092400.1 386596000 12706076 complement(2651510..2651878) 1 NC_017625.1 PFAM: Fels-1 Propage domain protein; KEGG: sbc:SbBS512_E1331 putative fels-1 prophage protein; Fels-1 Propage domain protein 2651878 12706076 EcDH1_2471 Escherichia coli DH1 Fels-1 Propage domain protein YP_006092400.1 2651510 R 536056 CDS YP_006092401.1 386596001 12706077 2652398..2653093 1 NC_017625.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: sdy:SDY_1207 septum formation inhibitor; septum site-determining protein MinC 2653093 12706077 EcDH1_2472 Escherichia coli DH1 septum site-determining protein MinC YP_006092401.1 2652398 D 536056 CDS YP_006092402.1 386596002 12706078 2653117..2653929 1 NC_017625.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sdy:SDY_1206 cell division inhibitor MinD; septum site-determining protein MinD 2653929 12706078 EcDH1_2473 Escherichia coli DH1 septum site-determining protein MinD YP_006092402.1 2653117 D 536056 CDS YP_006092403.1 386596003 12706079 2653933..2654199 1 NC_017625.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: sdy:SDY_1205 cell division topological specificity factor MinE; cell division topological specificity factor MinE 2654199 12706079 EcDH1_2474 Escherichia coli DH1 cell division topological specificity factor MinE YP_006092403.1 2653933 D 536056 CDS YP_006092404.1 386596004 12706081 2655550..2655834 1 NC_017625.1 KEGG: sbc:SbBS512_E1325 hypothetical protein; hypothetical protein 2655834 12706081 EcDH1_2476 Escherichia coli DH1 hypothetical protein YP_006092404.1 2655550 D 536056 CDS YP_006092405.1 386596005 12706082 2655844..2656173 1 NC_017625.1 KEGG: sbc:SbBS512_E1324 hypothetical protein; hypothetical protein 2656173 12706082 EcDH1_2477 Escherichia coli DH1 hypothetical protein YP_006092405.1 2655844 D 536056 CDS YP_006092406.1 386596006 12706084 complement(2659277..2659495) 1 NC_017625.1 hypothetical protein 2659495 12706084 EcDH1_2479 Escherichia coli DH1 hypothetical protein YP_006092406.1 2659277 R 536056 CDS YP_006092407.1 386596007 12706085 complement(2659627..2661192) 1 NC_017625.1 PFAM: EAL domain protein; KEGG: sfx:S1241 hypothetical protein; diguanylate phosphodiesterase 2661192 12706085 EcDH1_2480 Escherichia coli DH1 diguanylate phosphodiesterase YP_006092407.1 2659627 R 536056 CDS YP_006092408.1 386596008 12706086 complement(2661482..2661730) 1 NC_017625.1 KEGG: kpe:KPK_3791 hypothetical protein; hypothetical protein 2661730 12706086 EcDH1_2481 Escherichia coli DH1 hypothetical protein YP_006092408.1 2661482 R 536056 CDS YP_006092409.1 386596009 12706087 complement(2661843..2662109) 1 NC_017625.1 KEGG: kpe:KPK_3797 hypothetical protein; hypothetical protein 2662109 12706087 EcDH1_2482 Escherichia coli DH1 hypothetical protein YP_006092409.1 2661843 R 536056 CDS YP_006092410.1 386596010 12706088 complement(2662453..2662689) 1 NC_017625.1 KEGG: ent:Ent638_1756 hypothetical protein; hypothetical protein 2662689 12706088 EcDH1_2483 Escherichia coli DH1 hypothetical protein YP_006092410.1 2662453 R 536056 CDS YP_006092411.1 386596011 12706089 2663003..2664214 1 NC_017625.1 PFAM: EAL domain protein; BLUF domain protein; KEGG: kpn:KPN_00782 hypothetical protein; diguanylate phosphodiesterase 2664214 12706089 EcDH1_2484 Escherichia coli DH1 diguanylate phosphodiesterase YP_006092411.1 2663003 D 536056 CDS YP_006092412.1 386596012 12706090 2664419..2665150 1 NC_017625.1 PFAM: regulatory protein MerR; KEGG: sbc:SbBS512_E1317 transcriptional regulator MlrA; MerR family transcriptional regulator 2665150 12706090 EcDH1_2485 Escherichia coli DH1 MerR family transcriptional regulator YP_006092412.1 2664419 D 536056 CDS YP_006092413.1 386596013 12706091 2665371..2665775 1 NC_017625.1 PFAM: protein of unknown function DUF1398; KEGG: sbc:SbBS512_E1316 hypothetical protein; hypothetical protein 2665775 12706091 EcDH1_2486 Escherichia coli DH1 hypothetical protein YP_006092413.1 2665371 D 536056 CDS YP_006092414.1 386596014 12706093 complement(2667299..2668132) 1 NC_017625.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: dac:Daci_3155 HNH endonuclease; HNH endonuclease 2668132 12706093 EcDH1_2488 Escherichia coli DH1 HNH endonuclease YP_006092414.1 2667299 R 536056 CDS YP_006092415.1 386596015 12706094 complement(2668239..2668793) 1 NC_017625.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: stt:t2667 putative DNA-invertase; Resolvase domain-containing protein 2668793 12706094 EcDH1_2489 Escherichia coli DH1 Resolvase domain-containing protein YP_006092415.1 2668239 R 536056 CDS YP_006092416.1 386596016 12706095 2668983..2669615 1 NC_017625.1 PFAM: tail assembly chaperone gp38; KEGG: stt:t3435 hypothetical protein; tail assembly chaperone gp38 2669615 12706095 EcDH1_2490 Escherichia coli DH1 tail assembly chaperone gp38 YP_006092416.1 2668983 D 536056 CDS YP_006092417.1 386596017 12706096 complement(2669587..2670189) 1 NC_017625.1 PFAM: tail assembly chaperone gp38; KEGG: stt:t1349 putative bacteriophage tail fiber assembly protein; tail assembly chaperone gp38 2670189 12706096 EcDH1_2491 Escherichia coli DH1 tail assembly chaperone gp38 YP_006092417.1 2669587 R 536056 CDS YP_006092418.1 386596018 12706097 complement(2670189..2670977) 1 NC_017625.1 PFAM: Tail Collar domain protein; KEGG: sfx:S0319 hypothetical protein; Tail Collar domain-containing protein 2670977 12706097 EcDH1_2492 Escherichia coli DH1 Tail Collar domain-containing protein YP_006092418.1 2670189 R 536056 CDS YP_006092419.1 386596019 12706098 complement(2670981..2671565) 1 NC_017625.1 KEGG: sfv:SFV_0254 hypothetical protein; hypothetical protein 2671565 12706098 EcDH1_2493 Escherichia coli DH1 hypothetical protein YP_006092419.1 2670981 R 536056 CDS YP_006092420.1 386596020 12706099 complement(2671556..2672305) 1 NC_017625.1 PFAM: Baseplate J family protein; KEGG: sfv:SFV_0253 hypothetical protein; baseplate J family protein 2672305 12706099 EcDH1_2494 Escherichia coli DH1 baseplate J family protein YP_006092420.1 2671556 R 536056 CDS YP_006092421.1 386596021 12706100 complement(2672274..2672747) 1 NC_017625.1 KEGG: sew:SeSA_A2265 phage portal protein, HK97 family; phage portal protein, HK97 family 2672747 12706100 EcDH1_2495 Escherichia coli DH1 phage portal protein, HK97 family YP_006092421.1 2672274 R 536056 CDS YP_006092422.1 386596022 12706101 complement(2672747..2672929) 1 NC_017625.1 KEGG: sed:SeD_A2270 hypothetical protein; hypothetical protein 2672929 12706101 EcDH1_2496 Escherichia coli DH1 hypothetical protein YP_006092422.1 2672747 R 536056 CDS YP_006092423.1 386596023 12706102 complement(2672941..2674308) 1 NC_017625.1 PFAM: Terminase; KEGG: sew:SeSA_A2267 putative phage terminase, large subunit; terminase 2674308 12706102 EcDH1_2497 Escherichia coli DH1 terminase YP_006092423.1 2672941 R 536056 CDS YP_006092424.1 386596024 12706103 complement(2674318..2674656) 1 NC_017625.1 hypothetical protein 2674656 12706103 EcDH1_2498 Escherichia coli DH1 hypothetical protein YP_006092424.1 2674318 R 536056 CDS YP_006092425.1 386596025 12706104 complement(2674653..2675210) 1 NC_017625.1 KEGG: sbo:SBO_0254 hypothetical protein; hypothetical protein 2675210 12706104 EcDH1_2499 Escherichia coli DH1 hypothetical protein YP_006092425.1 2674653 R 536056 CDS YP_006092426.1 386596026 12706105 complement(2675254..2675454) 1 NC_017625.1 KEGG: sbc:SbBS512_E0246 hypothetical protein; hypothetical protein 2675454 12706105 EcDH1_2500 Escherichia coli DH1 hypothetical protein YP_006092426.1 2675254 R 536056 CDS YP_006092427.1 386596027 12706106 2675545..2676219 1 NC_017625.1 PFAM: peptidase S24 and S26 domain protein; KEGG: sbo:SBO_0255 putative phage repressor; peptidase S24 and S26 domain-containing protein 2676219 12706106 EcDH1_2501 Escherichia coli DH1 peptidase S24 and S26 domain-containing protein YP_006092427.1 2675545 D 536056 CDS YP_006092428.1 386596028 12706107 2676394..2676702 1 NC_017625.1 KEGG: sty:STY2068 hypothetical protein; hypothetical protein 2676702 12706107 EcDH1_2502 Escherichia coli DH1 hypothetical protein YP_006092428.1 2676394 D 536056 CDS YP_006092429.1 386596029 12706108 complement(2676640..2676981) 1 NC_017625.1 hypothetical protein 2676981 12706108 EcDH1_2503 Escherichia coli DH1 hypothetical protein YP_006092429.1 2676640 R 536056 CDS YP_006092430.1 386596030 12706109 2677446..2677691 1 NC_017625.1 PFAM: Excisionase domain protein; KEGG: kpe:KPK_3405 putative excisionase; Excisionase domain protein 2677691 12706109 EcDH1_2504 Escherichia coli DH1 Excisionase domain protein YP_006092430.1 2677446 D 536056 CDS YP_006092431.1 386596031 12706111 complement(2678640..2679506) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit 2679506 12706111 EcDH1_2506 Escherichia coli DH1 integrase catalytic subunit YP_006092431.1 2678640 R 536056 CDS YP_006092432.1 386596032 12706112 complement(2679503..2679802) 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein 2679802 12706112 EcDH1_2507 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006092432.1 2679503 R 536056 CDS YP_006092433.1 386596033 12706113 complement(2680151..2681044) 1 NC_017625.1 KEGG: spl:Spea_3454 phage exclusion protein Lit; phage exclusion protein Lit 2681044 12706113 EcDH1_2508 Escherichia coli DH1 phage exclusion protein Lit YP_006092433.1 2680151 R 536056 CDS YP_006092434.1 386596034 12706114 2681511..2682206 1 NC_017625.1 KEGG: kpn:KPN_04689 hypothetical protein; hypothetical protein 2682206 12706114 EcDH1_2509 Escherichia coli DH1 hypothetical protein YP_006092434.1 2681511 D 536056 CDS YP_006092435.1 386596035 12706115 2682207..2682872 1 NC_017625.1 KEGG: kpn:KPN_04690 hypothetical protein; hypothetical protein 2682872 12706115 EcDH1_2510 Escherichia coli DH1 hypothetical protein YP_006092435.1 2682207 D 536056 CDS YP_006092436.1 386596036 12706116 complement(2683366..2684616) 1 NC_017625.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sbc:SbBS512_E1315 isocitrate dehydrogenase, NADP-dependent; isocitrate dehydrogenase 2684616 12706116 EcDH1_2511 Escherichia coli DH1 isocitrate dehydrogenase YP_006092436.1 2683366 R 536056 CDS YP_006092437.1 386596037 12706117 2684788..2685441 1 NC_017625.1 PFAM: pseudouridine synthase; KEGG: sfv:SFV_1170 23S rRNA pseudouridine synthase E; pseudouridine synthase 2685441 12706117 EcDH1_2512 Escherichia coli DH1 pseudouridine synthase YP_006092437.1 2684788 D 536056 CDS YP_006092438.1 386596038 12706118 2685451..2685912 1 NC_017625.1 PFAM: NUDIX hydrolase; KEGG: sdy:SDY_2018 putative phosphohydrolase; NUDIX hydrolase 2685912 12706118 EcDH1_2513 Escherichia coli DH1 NUDIX hydrolase YP_006092438.1 2685451 D 536056 CDS YP_006092439.1 386596039 12706119 2685966..2687072 1 NC_017625.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: sbo:SBO_1906 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 2687072 12706119 EcDH1_2514 Escherichia coli DH1 tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase YP_006092439.1 2685966 D 536056 CDS YP_006092440.1 386596040 12706120 2687108..2687749 1 NC_017625.1 PFAM: protein of unknown function DUF489; KEGG: sdy:SDY_2020 hypothetical protein; hypothetical protein 2687749 12706120 EcDH1_2515 Escherichia coli DH1 hypothetical protein YP_006092440.1 2687108 D 536056 CDS YP_006092441.1 386596041 12706121 2687753..2689123 1 NC_017625.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase domain protein; KEGG: sbc:SbBS512_E1309 adenylosuccinate lyase; adenylosuccinate lyase 2689123 12706121 EcDH1_2516 Escherichia coli DH1 adenylosuccinate lyase YP_006092441.1 2687753 D 536056 CDS YP_006092442.1 386596042 12706122 2689292..2689963 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_2022 DNA-binding response regulator in two-component regulatory system with PhoQ; winged helix family two component transcriptional regulator 2689963 12706122 EcDH1_2517 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006092442.1 2689292 D 536056 CDS YP_006092443.1 386596043 12706123 2689963..2691423 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PhoQ Sensor domain protein; KEGG: sbc:SbBS512_E1307 sensor histidine kinase PhoQ; histidine kinase 2691423 12706123 EcDH1_2518 Escherichia coli DH1 histidine kinase YP_006092443.1 2689963 D 536056 CDS YP_006092444.1 386596044 12706124 2691499..2692620 1 NC_017625.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: sbc:SbBS512_E1306 cupin family protein; cupin 2692620 12706124 EcDH1_2519 Escherichia coli DH1 cupin YP_006092444.1 2691499 D 536056 CDS YP_006092445.1 386596045 12706125 complement(2692669..2693895) 1 NC_017625.1 KEGG: sdy:SDY_2025 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase T 2693895 12706125 EcDH1_2520 Escherichia coli DH1 peptidase T YP_006092445.1 2692669 R 536056 CDS YP_006092446.1 386596046 12706126 2694145..2695281 1 NC_017625.1 KEGG: sfx:S1208 putrescine/spermidine ABC transporter ATPase protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 2695281 12706126 EcDH1_2521 Escherichia coli DH1 spermidine/putrescine ABC transporter ATPase YP_006092446.1 2694145 D 536056 CDS YP_006092447.1 386596047 12706127 2695265..2696122 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1143 spermidine/putrescine ABC transporter membrane protein; binding-protein-dependent transport system inner membrane protein 2696122 12706127 EcDH1_2522 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092447.1 2695265 D 536056 CDS YP_006092448.1 386596048 12706128 2696119..2696913 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2201 spermidine/putrescine ABC transporter, permease protein PotC; ornithine carbamoyltransferase 2696913 12706128 EcDH1_2523 Escherichia coli DH1 ornithine carbamoyltransferase YP_006092448.1 2696119 D 536056 CDS YP_006092449.1 386596049 12706129 2696910..2697956 1 NC_017625.1 PFAM: extracellular solute-binding protein family 1; KEGG: sdy:SDY_2029 spermidine/putrescine ABC transporter periplasmic substrate-binding protein; extracellular solute-binding protein 2697956 12706129 EcDH1_2524 Escherichia coli DH1 extracellular solute-binding protein YP_006092449.1 2696910 D 536056 CDS YP_006092450.1 386596050 12706130 2698014..2698475 1 NC_017625.1 KEGG: npu:Npun_F0186 hypothetical protein; hypothetical protein 2698475 12706130 EcDH1_2525 Escherichia coli DH1 hypothetical protein YP_006092450.1 2698014 D 536056 CDS YP_006092451.1 386596051 12706131 2698472..2699260 1 NC_017625.1 hypothetical protein 2699260 12706131 EcDH1_2526 Escherichia coli DH1 hypothetical protein YP_006092451.1 2698472 D 536056 CDS YP_006092452.1 386596052 12706132 complement(2699380..2700219) 1 NC_017625.1 PFAM: Silent information regulator protein Sir2; KEGG: sbo:SBO_1941 NAD-dependent deacetylase; silent information regulator protein Sir2 2700219 12706132 EcDH1_2527 Escherichia coli DH1 silent information regulator protein Sir2 YP_006092452.1 2699380 R 536056 CDS YP_006092453.1 386596053 12706133 complement(2700235..2701146) 1 NC_017625.1 PFAM: ROK family protein; KEGG: sdy:SDY_2031 N-acetyl-D-glucosamine kinase; ROK family protein 2701146 12706133 EcDH1_2528 Escherichia coli DH1 ROK family protein YP_006092453.1 2700235 R 536056 CDS YP_006092454.1 386596054 12706134 complement(2701175..2702413) 1 NC_017625.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; lipoprotein releasing system, transmembrane protein LolE; PFAM: protein of unknown function DUF214; KEGG: sfv:SFV_1138 outer membrane-specific lipoprotein transporter subunit LolE; lipoprotein releasing system, transmembrane protein LolE 2702413 12706134 EcDH1_2529 Escherichia coli DH1 lipoprotein releasing system, transmembrane protein LolE YP_006092454.1 2701175 R 536056 CDS YP_006092455.1 386596055 12706135 complement(2702419..2703120) 1 NC_017625.1 KEGG: sbc:SbBS512_E2206 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 2703120 12706135 EcDH1_2530 Escherichia coli DH1 lipoprotein releasing system, ATP-binding protein YP_006092455.1 2702419 R 536056 CDS YP_006092456.1 386596056 12706136 complement(2703113..2704312) 1 NC_017625.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ssn:SSON_1136 outer membrane-specific lipoprotein transporter subunit LolC; lipoprotein releasing system transmembrane protein LolC/E family 2704312 12706136 EcDH1_2531 Escherichia coli DH1 lipoprotein releasing system transmembrane protein LolC/E family YP_006092456.1 2703113 R 536056 CDS YP_006092457.1 386596057 12706137 2704574..2705647 1 NC_017625.1 PFAM: acyltransferase 3; KEGG: ssn:SSON_1135 hypothetical protein; acyltransferase 3 2705647 12706137 EcDH1_2532 Escherichia coli DH1 acyltransferase 3 YP_006092457.1 2704574 D 536056 CDS YP_006092458.1 386596058 12706138 2705727..2709221 1 NC_017625.1 KEGG: sfv:SFV_1134 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 2709221 12706138 EcDH1_2533 Escherichia coli DH1 transcription-repair coupling factor YP_006092458.1 2705727 D 536056 CDS YP_006092459.1 386596059 12706139 2709368..2710327 1 NC_017625.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_2037 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2710327 12706139 EcDH1_2534 Escherichia coli DH1 ErfK/YbiS/YcfS/YnhG family protein YP_006092459.1 2709368 D 536056 CDS YP_006092460.1 386596060 12706140 complement(2710409..2710666) 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: sdy:SDY_2038 hypothetical protein; hypothetical protein 2710666 12706140 EcDH1_2535 Escherichia coli DH1 hypothetical protein YP_006092460.1 2710409 R 536056 CDS YP_006092461.1 386596061 12706141 2710907..2711539 1 NC_017625.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_2039 hypothetical protein; TetR family transcriptional regulator 2711539 12706141 EcDH1_2536 Escherichia coli DH1 TetR family transcriptional regulator YP_006092461.1 2710907 D 536056 CDS YP_006092462.1 386596062 12706142 complement(2711601..2712140) 1 NC_017625.1 PFAM: 17 kDa surface antigen; KEGG: sdy:SDY_2040 hypothetical protein; 17 kDa surface antigen 2712140 12706142 EcDH1_2537 Escherichia coli DH1 17 kDa surface antigen YP_006092462.1 2711601 R 536056 CDS YP_006092463.1 386596063 12706143 complement(2712350..2713654) 1 NC_017625.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sfx:S1193 respiratory NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2713654 12706143 EcDH1_2538 Escherichia coli DH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_006092463.1 2712350 R 536056 CDS YP_006092464.1 386596064 12706144 complement(2714054..2714596) 1 NC_017625.1 PFAM: protein of unknown function UPF0227; KEGG: sdy:SDY_2042 hypothetical protein; hypothetical protein 2714596 12706144 EcDH1_2539 Escherichia coli DH1 hypothetical protein YP_006092464.1 2714054 R 536056 CDS YP_006092465.1 386596065 12706145 complement(2714619..2715644) 1 NC_017625.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: sfl:SF1111 beta-hexosaminidase; glycoside hydrolase family protein 2715644 12706145 EcDH1_2540 Escherichia coli DH1 glycoside hydrolase family protein YP_006092465.1 2714619 R 536056 CDS YP_006092466.1 386596066 12706146 complement(2715655..2716479) 1 NC_017625.1 KEGG: sdy:SDY_2044 thiamin kinase; TIGRFAM: thiamine kinase; PFAM: aminoglycoside phosphotransferase; thiamine kinase 2716479 12706146 EcDH1_2541 Escherichia coli DH1 thiamine kinase YP_006092466.1 2715655 R 536056 CDS YP_006092467.1 386596067 12706147 complement(2716460..2717101) 1 NC_017625.1 TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: sdy:SDY_2045 hypothetical protein; membrane lipoprotein lipid attachment site 2717101 12706147 EcDH1_2542 Escherichia coli DH1 membrane lipoprotein lipid attachment site YP_006092467.1 2716460 R 536056 CDS YP_006092468.1 386596068 12706148 complement(2717115..2717492) 1 NC_017625.1 PFAM: protein of unknown function DUF1425; KEGG: sfv:SFV_1124 hypothetical protein; hypothetical protein 2717492 12706148 EcDH1_2543 Escherichia coli DH1 hypothetical protein YP_006092468.1 2717115 R 536056 CDS YP_006092469.1 386596069 12706149 complement(2717495..2717854) 1 NC_017625.1 PFAM: histidine triad (HIT) protein; KEGG: sdy:SDY_2047 purine nucleoside phosphoramidase; histidine triad (HIT) protein 2717854 12706149 EcDH1_2544 Escherichia coli DH1 histidine triad (HIT) protein YP_006092469.1 2717495 R 536056 CDS YP_006092470.1 386596070 12706150 2718188..2720377 1 NC_017625.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdy:SDY_2048 ferric-rhodotorulic acid outer membrane transporter; TonB-dependent siderophore receptor 2720377 12706150 EcDH1_2545 Escherichia coli DH1 TonB-dependent siderophore receptor YP_006092470.1 2718188 D 536056 CDS YP_006092471.1 386596071 12706151 complement(2720437..2721870) 1 NC_017625.1 TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sdy:SDY_2049 glucose-specific PTS system IIBC components; PTS system glucose-specific transporter subunit IIBC 2721870 12706151 EcDH1_2546 Escherichia coli DH1 PTS system glucose-specific transporter subunit IIBC YP_006092471.1 2720437 R 536056 CDS YP_006092472.1 386596072 12706152 complement(2722165..2722962) 1 NC_017625.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sdy:SDY_2050 predicted metallodependent hydrolase; TatD family hydrolase 2722962 12706152 EcDH1_2547 Escherichia coli DH1 TatD family hydrolase YP_006092472.1 2722165 R 536056 CDS YP_006092473.1 386596073 12706153 complement(2722973..2723977) 1 NC_017625.1 KEGG: sbc:SbBS512_E2225 DNA polymerase III, delta' subunit; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: DNA polymerase III delta subunit; DNA polymerase III subunit delta' 2723977 12706153 EcDH1_2548 Escherichia coli DH1 DNA polymerase III subunit delta' YP_006092473.1 2722973 R 536056 CDS YP_006092474.1 386596074 12706154 complement(2723974..2724615) 1 NC_017625.1 PFAM: thymidylate kinase; KEGG: sdy:SDY_2052 thymidylate kinase; dTMP kinase 2724615 12706154 EcDH1_2549 Escherichia coli DH1 dTMP kinase YP_006092474.1 2723974 R 536056 CDS YP_006092475.1 386596075 12706155 complement(2724605..2725627) 1 NC_017625.1 PFAM: aminodeoxychorismate lyase; KEGG: sbc:SbBS512_E2227 hypothetical protein; aminodeoxychorismate lyase 2725627 12706155 EcDH1_2550 Escherichia coli DH1 aminodeoxychorismate lyase YP_006092475.1 2724605 R 536056 CDS YP_006092476.1 386596076 12706156 complement(2725630..2726439) 1 NC_017625.1 TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; KEGG: sdy:SDY_2054 4-amino-4-deoxychorismate lyase; aminodeoxychorismate lyase 2726439 12706156 EcDH1_2551 Escherichia coli DH1 aminodeoxychorismate lyase YP_006092476.1 2725630 R 536056 CDS YP_006092477.1 386596077 12706157 complement(2726559..2727800) 1 NC_017625.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: sfx:S1179 3-oxoacyl-(acyl carrier protein) synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 2727800 12706157 EcDH1_2552 Escherichia coli DH1 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_006092477.1 2726559 R 536056 CDS YP_006092478.1 386596078 12706158 complement(2727888..2728124) 1 NC_017625.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: cko:CKO_01964 acyl carrier protein; acyl carrier protein 2728124 12706158 EcDH1_2553 Escherichia coli DH1 acyl carrier protein YP_006092478.1 2727888 R 536056 CDS YP_006092479.1 386596079 12706159 complement(2728335..2729069) 1 NC_017625.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbc:SbBS512_E2231 3-oxoacyl-[acyl-carrier-protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2729069 12706159 EcDH1_2554 Escherichia coli DH1 3-oxoacyl-(acyl-carrier-protein) reductase YP_006092479.1 2728335 R 536056 CDS YP_006092480.1 386596080 12706160 complement(2729082..2730011) 1 NC_017625.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: sbc:SbBS512_E2232 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 2730011 12706160 EcDH1_2555 Escherichia coli DH1 malonyl CoA-acyl carrier protein transacylase YP_006092480.1 2729082 R 536056 CDS YP_006092481.1 386596081 12706161 complement(2730027..2730980) 1 NC_017625.1 KEGG: sbc:SbBS512_E2233 3-oxoacyl-[acyl-carrier-protein] synthase 3; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: Hydroxymethylglutaryl-coenzyme A synthase domain; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 2730980 12706161 EcDH1_2556 Escherichia coli DH1 3-oxoacyl-(acyl-carrier-protein) synthase III YP_006092481.1 2730027 R 536056 CDS YP_006092482.1 386596082 12706162 complement(2731048..2732088) 1 NC_017625.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: ssn:SSON_1110 fatty acid/phospholipid synthesis protein; fatty acid/phospholipid synthesis protein PlsX 2732088 12706162 EcDH1_2557 Escherichia coli DH1 fatty acid/phospholipid synthesis protein PlsX YP_006092482.1 2731048 R 536056 CDS YP_006092483.1 386596083 12706163 complement(2732199..2732372) 1 NC_017625.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sdy:SDY_2061 50S ribosomal protein L32; 50S ribosomal protein L32 2732372 12706163 EcDH1_2558 Escherichia coli DH1 50S ribosomal protein L32 YP_006092483.1 2732199 R 536056 CDS YP_006092484.1 386596084 12706164 complement(2732424..2732945) 1 NC_017625.1 PFAM: protein of unknown function DUF177; KEGG: sdy:SDY_2062 hypothetical protein; hypothetical protein 2732945 12706164 EcDH1_2559 Escherichia coli DH1 hypothetical protein YP_006092484.1 2732424 R 536056 CDS YP_006092485.1 386596085 12706165 2733105..2733728 1 NC_017625.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sfv:SFV_1108 Maf-like protein; maf protein 2733728 12706165 EcDH1_2560 Escherichia coli DH1 maf protein YP_006092485.1 2733105 D 536056 CDS YP_006092486.1 386596086 12706166 complement(2733840..2734799) 1 NC_017625.1 KEGG: sfx:S1170 23S rRNA pseudouridylate synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 2734799 12706166 EcDH1_2561 Escherichia coli DH1 RluA family pseudouridine synthase YP_006092486.1 2733840 R 536056 CDS YP_006092487.1 386596087 12706167 2735372..2738557 1 NC_017625.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: sbo:SBO_1980 ribonuclease E; ribonuclease, Rne/Rng family 2738557 12706167 EcDH1_2562 Escherichia coli DH1 ribonuclease, Rne/Rng family YP_006092487.1 2735372 D 536056 CDS YP_006092488.1 386596088 12706168 complement(2738753..2739706) 1 NC_017625.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: sbc:SbBS512_E2242 flagellar hook-associated protein 3; flagellar hook-associated protein 3 2739706 12706168 EcDH1_2563 Escherichia coli DH1 flagellar hook-associated protein 3 YP_006092488.1 2738753 R 536056 CDS YP_006092489.1 386596089 12706169 complement(2739718..2741361) 1 NC_017625.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sbo:SBO_1982 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 2741361 12706169 EcDH1_2564 Escherichia coli DH1 flagellar hook-associated protein FlgK YP_006092489.1 2739718 R 536056 CDS YP_006092490.1 386596090 12706170 complement(2741427..2742368) 1 NC_017625.1 KEGG: ssn:SSON_1101 peptidoglycan hydrolase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ type-2 family protein; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 2742368 12706170 EcDH1_2565 Escherichia coli DH1 flagellar rod assembly protein/muramidase FlgJ YP_006092490.1 2741427 R 536056 CDS YP_006092491.1 386596091 12706171 complement(2742368..2743465) 1 NC_017625.1 PFAM: flagellar P-ring protein; KEGG: sfx:S1164 flagellar basal body P-ring protein; flagellar P-ring protein 2743465 12706171 EcDH1_2566 Escherichia coli DH1 flagellar P-ring protein YP_006092491.1 2742368 R 536056 CDS YP_006092492.1 386596092 12706172 complement(2743477..2744184) 1 NC_017625.1 PFAM: flagellar L-ring protein; KEGG: sfv:SFV_1101 flagellar basal body L-ring protein; flagellar L-ring protein 2744184 12706172 EcDH1_2567 Escherichia coli DH1 flagellar L-ring protein YP_006092492.1 2743477 R 536056 CDS YP_006092493.1 386596093 12706173 complement(2744228..2745010) 1 NC_017625.1 TIGRFAM: flagellar basal-body rod protein FlgG; flagellar basal-body rod FlgG family protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sfv:SFV_1100 flagellar basal body rod protein FlgG; flagellar basal-body rod protein FlgG 2745010 12706173 EcDH1_2568 Escherichia coli DH1 flagellar basal-body rod protein FlgG YP_006092493.1 2744228 R 536056 CDS YP_006092494.1 386596094 12706174 complement(2745182..2745937) 1 NC_017625.1 TIGRFAM: flagellar basal-body rod protein FlgF; flagellar basal-body rod FlgF family protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sfv:SFV_1099 flagellar basal body rod protein FlgF; flagellar basal-body rod protein FlgF 2745937 12706174 EcDH1_2569 Escherichia coli DH1 flagellar basal-body rod protein FlgF YP_006092494.1 2745182 R 536056 CDS YP_006092495.1 386596095 12706175 complement(2745957..2747165) 1 NC_017625.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: sbo:SBO_1988 flagellar hook protein FlgE; flagellar basal body FlaE domain-containing protein 2747165 12706175 EcDH1_2570 Escherichia coli DH1 flagellar basal body FlaE domain-containing protein YP_006092495.1 2745957 R 536056 CDS YP_006092496.1 386596096 12706176 complement(2747190..2747885) 1 NC_017625.1 PFAM: flagellar hook capping protein; KEGG: sfv:SFV_1097 flagellar basal body rod modification protein; flagellar hook capping protein 2747885 12706176 EcDH1_2571 Escherichia coli DH1 flagellar hook capping protein YP_006092496.1 2747190 R 536056 CDS YP_006092497.1 386596097 12706177 complement(2747897..2748301) 1 NC_017625.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sbc:SbBS512_E2251 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 2748301 12706177 EcDH1_2572 Escherichia coli DH1 flagellar basal-body rod protein FlgC YP_006092497.1 2747897 R 536056 CDS YP_006092498.1 386596098 12706178 complement(2748305..2748721) 1 NC_017625.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: sbc:SbBS512_E2252 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 2748721 12706178 EcDH1_2573 Escherichia coli DH1 flagellar basal-body rod protein FlgB YP_006092498.1 2748305 R 536056 CDS YP_006092499.1 386596099 12706179 2748876..2749535 1 NC_017625.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: sfv:SFV_1094 flagellar basal body P-ring biosynthesis protein FlgA; flagella basal body P-ring formation protein FlgA 2749535 12706179 EcDH1_2574 Escherichia coli DH1 flagella basal body P-ring formation protein FlgA YP_006092499.1 2748876 D 536056 CDS YP_006092500.1 386596100 12706180 2749611..2749904 1 NC_017625.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: sfv:SFV_1093 anti-sigma28 factor FlgM; anti-sigma-28 factor FlgM 2749904 12706180 EcDH1_2575 Escherichia coli DH1 anti-sigma-28 factor FlgM YP_006092500.1 2749611 D 536056 CDS YP_006092501.1 386596101 12706181 2749909..2750325 1 NC_017625.1 PFAM: FlgN family protein; KEGG: ssn:SSON_1090 protein of flagellar biosynthesis; FlgN family protein 2750325 12706181 EcDH1_2576 Escherichia coli DH1 FlgN family protein YP_006092501.1 2749909 D 536056 CDS YP_006092502.1 386596102 12706182 complement(2750365..2751900) 1 NC_017625.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: sbc:SbBS512_E2257 integral membrane protein MviN; integral membrane protein MviN 2751900 12706182 EcDH1_2577 Escherichia coli DH1 integral membrane protein MviN YP_006092502.1 2750365 R 536056 CDS YP_006092503.1 386596103 12706183 complement(2752010..2752933) 1 NC_017625.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ssn:SSON_1088 putative virulence factor; oxidoreductase domain-containing protein 2752933 12706183 EcDH1_2578 Escherichia coli DH1 oxidoreductase domain-containing protein YP_006092503.1 2752010 R 536056 CDS YP_006092504.1 386596104 12706184 complement(2752935..2753582) 1 NC_017625.1 PFAM: protein of unknown function DUF480; KEGG: ssn:SSON_1087 hypothetical protein; hypothetical protein 2753582 12706184 EcDH1_2579 Escherichia coli DH1 hypothetical protein YP_006092504.1 2752935 R 536056 CDS YP_006092505.1 386596105 12706185 complement(2753593..2754177) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E2260 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5 2754177 12706185 EcDH1_2580 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006092505.1 2753593 R 536056 CDS YP_006092506.1 386596106 12706186 2754413..2755621 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2261 multidrug resistance protein MdtH; major facilitator superfamily protein 2755621 12706186 EcDH1_2581 Escherichia coli DH1 major facilitator superfamily protein YP_006092506.1 2754413 D 536056 CDS YP_006092507.1 386596107 12706187 2755685..2756332 1 NC_017625.1 TIGRFAM: glutaredoxin, GrxB family; PFAM: Glutathione S-transferase domain; glutaredoxin 2 domain protein; KEGG: sbc:SbBS512_E2262 glutaredoxin, GrxB family; GrxB family glutaredoxin 2756332 12706187 EcDH1_2582 Escherichia coli DH1 GrxB family glutaredoxin YP_006092507.1 2755685 D 536056 CDS YP_006092508.1 386596108 12706188 2756466..2757026 1 NC_017625.1 PFAM: protein of unknown function DUF1439; KEGG: sbc:SbBS512_E2264 putative lipoprotein; hypothetical protein 2757026 12706188 EcDH1_2583 Escherichia coli DH1 hypothetical protein YP_006092508.1 2756466 D 536056 CDS YP_006092509.1 386596109 12706189 2757132..2758178 1 NC_017625.1 KEGG: ssn:SSON_1082 dihydroorotase; TIGRFAM: dihydroorotase, homodimeric type; PFAM: amidohydrolase; dihydroorotase, homodimeric type 2758178 12706189 EcDH1_2584 Escherichia coli DH1 dihydroorotase, homodimeric type YP_006092509.1 2757132 D 536056 CDS YP_006092510.1 386596110 12706190 2758252..2758497 1 NC_017625.1 PFAM: DinI family protein; KEGG: ssn:SSON_1081 DNA damage-inducible protein I; DinI family protein 2758497 12706190 EcDH1_2585 Escherichia coli DH1 DinI family protein YP_006092510.1 2758252 D 536056 CDS YP_006092511.1 386596111 12706191 2758781..2759038 1 NC_017625.1 KEGG: sdy:SDY_2095 biofilm formation regulatory protein BssS; biofilm formation regulatory protein BssS 2759038 12706191 EcDH1_2586 Escherichia coli DH1 biofilm formation regulatory protein BssS YP_006092511.1 2758781 D 536056 CDS YP_006092512.1 386596112 12706192 2759153..2760271 1 NC_017625.1 PFAM: FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E2268 N-methyl-L-tryptophan oxidase; sarcosine oxidase 2760271 12706192 EcDH1_2587 Escherichia coli DH1 sarcosine oxidase YP_006092512.1 2759153 D 536056 CDS YP_006092513.1 386596113 12706193 2760319..2760432 1 NC_017625.1 KEGG: sdy:SDY_2097 hypothetical protein; hypothetical protein 2760432 12706193 EcDH1_2588 Escherichia coli DH1 hypothetical protein YP_006092513.1 2760319 D 536056 CDS YP_006092514.1 386596114 12706194 2760693..2761259 1 NC_017625.1 PFAM: cytochrome B561; KEGG: sbc:SbBS512_E2271 nickel-dependent hydrogenase b-type cytochrome subunit; cytochrome B561 2761259 12706194 EcDH1_2589 Escherichia coli DH1 cytochrome B561 YP_006092514.1 2760693 D 536056 CDS YP_006092515.1 386596115 12706195 2761263..2761838 1 NC_017625.1 PFAM: YceI family protein; KEGG: sbc:SbBS512_E2272 YceI protein; hypothetical protein 2761838 12706195 EcDH1_2590 Escherichia coli DH1 hypothetical protein YP_006092515.1 2761263 D 536056 CDS YP_006092516.1 386596116 12706196 complement(2761880..2762932) 1 NC_017625.1 PFAM: Rhodanese domain protein; KEGG: sfv:SFV_1078 hypothetical protein; Rhodanese domain-containing protein 2762932 12706196 EcDH1_2591 Escherichia coli DH1 Rhodanese domain-containing protein YP_006092516.1 2761880 R 536056 CDS YP_006092517.1 386596117 12706197 2763157..2764077 1 NC_017625.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: sbc:SbBS512_E2276 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 2764077 12706197 EcDH1_2592 Escherichia coli DH1 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_006092517.1 2763157 D 536056 CDS YP_006092518.1 386596118 12706198 2764249..2765475 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: cko:CKO_02014 drug efflux system protein MdtG; major facilitator superfamily protein 2765475 12706198 EcDH1_2593 Escherichia coli DH1 major facilitator superfamily protein YP_006092518.1 2764249 D 536056 CDS YP_006092519.1 386596119 12706199 2765558..2765932 1 NC_017625.1 KEGG: sdy:SDY_2299 hypothetical protein; hypothetical protein 2765932 12706199 EcDH1_2594 Escherichia coli DH1 hypothetical protein YP_006092519.1 2765558 D 536056 CDS YP_006092520.1 386596120 12706200 complement(2765933..2766160) 1 NC_017625.1 PFAM: protein of unknown function DUF1375; KEGG: sdy:SDY_2300 predicted lipoprotein; hypothetical protein 2766160 12706200 EcDH1_2595 Escherichia coli DH1 hypothetical protein YP_006092520.1 2765933 R 536056 CDS YP_006092521.1 386596121 12706201 complement(2766333..2768846) 1 NC_017625.1 PFAM: glycosyl transferase family 2; KEGG: ssn:SSON_1062 glucosyltransferase MdoH; family 2 glycosyl transferase 2768846 12706201 EcDH1_2596 Escherichia coli DH1 family 2 glycosyl transferase YP_006092521.1 2766333 R 536056 CDS YP_006092522.1 386596122 12706202 complement(2768869..2770422) 1 NC_017625.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: sbc:SbBS512_E2282 glucans biosynthesis protein G; periplasmic glucan biosynthesis protein MdoG 2770422 12706202 EcDH1_2597 Escherichia coli DH1 periplasmic glucan biosynthesis protein MdoG YP_006092522.1 2768869 R 536056 CDS YP_006092523.1 386596123 12706203 2770798..2771955 1 NC_017625.1 PFAM: acyltransferase 3; KEGG: ssn:SSON_1060 glucans biosynthesis protein; acyltransferase 3 2771955 12706203 EcDH1_2598 Escherichia coli DH1 acyltransferase 3 YP_006092523.1 2770798 D 536056 CDS YP_006092524.1 386596124 12706204 complement(2771963..2773444) 1 NC_017625.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: sfx:S1116 putative synthase; phospholipase D/Transphosphatidylase 2773444 12706204 EcDH1_2599 Escherichia coli DH1 phospholipase D/Transphosphatidylase YP_006092524.1 2771963 R 536056 CDS YP_006092525.1 386596125 12706205 complement(2773386..2773919) 1 NC_017625.1 PFAM: Appr-1-p processing domain protein; KEGG: sbo:SBO_2021 hypothetical protein; Appr-1-p processing protein 2773919 12706205 EcDH1_2600 Escherichia coli DH1 Appr-1-p processing protein YP_006092525.1 2773386 R 536056 CDS YP_006092526.1 386596126 12706206 complement(2774014..2774325) 1 NC_017625.1 KEGG: ssn:SSON_1057 hypothetical protein; hypothetical protein 2774325 12706206 EcDH1_2601 Escherichia coli DH1 hypothetical protein YP_006092526.1 2774014 R 536056 CDS YP_006092527.1 386596127 12706207 complement(2774446..2774778) 1 NC_017625.1 KEGG: ssn:SSON_1056 putative curli production protein; putative curli production protein 2774778 12706207 EcDH1_2602 Escherichia coli DH1 putative curli production protein YP_006092527.1 2774446 R 536056 CDS YP_006092528.1 386596128 12706208 complement(2774837..2775292) 1 NC_017625.1 KEGG: sbo:SBO_2026 cryptic curlin major subunit; cryptic curlin major subunit 2775292 12706208 EcDH1_2603 Escherichia coli DH1 cryptic curlin major subunit YP_006092528.1 2774837 R 536056 CDS YP_006092529.1 386596129 12706209 complement(2775333..2775788) 1 NC_017625.1 PFAM: Curlin associated repeat protein; KEGG: sfx:S1108 curlin minor subunit; Curlin associated repeat protein 2775788 12706209 EcDH1_2604 Escherichia coli DH1 Curlin associated repeat protein YP_006092529.1 2775333 R 536056 CDS YP_006092530.1 386596130 12706210 2776543..2777193 1 NC_017625.1 PFAM: regulatory protein LuxR; KEGG: sbo:SBO_2028 DNA-binding transcriptional activator in two-component regulatory system; LuxR family transcriptional regulator 2777193 12706210 EcDH1_2605 Escherichia coli DH1 LuxR family transcriptional regulator YP_006092530.1 2776543 D 536056 CDS YP_006092531.1 386596131 12706211 2777198..2777587 1 NC_017625.1 PFAM: regulator of chromosome condensation RCC1; KEGG: ssn:SSON_1048 curli assembly protein CsgE; chromosome condensation regulator RCC1 2777587 12706211 EcDH1_2606 Escherichia coli DH1 chromosome condensation regulator RCC1 YP_006092531.1 2777198 D 536056 CDS YP_006092532.1 386596132 12706212 2777612..2778028 1 NC_017625.1 KEGG: ssn:SSON_1047 curli assembly protein CsgF; curli assembly protein CsgF 2778028 12706212 EcDH1_2607 Escherichia coli DH1 curli assembly protein CsgF YP_006092532.1 2777612 D 536056 CDS YP_006092533.1 386596133 12706213 2778055..2778888 1 NC_017625.1 PFAM: Curli production assembly/transport component CsgG; KEGG: ssn:SSON_1046 curli production assembly/transport component, 2nd curli operon; curli production assembly/transport component CsgG 2778888 12706213 EcDH1_2608 Escherichia coli DH1 curli production assembly/transport component CsgG YP_006092533.1 2778055 D 536056 CDS YP_006092534.1 386596134 12706214 complement(2778952..2779473) 1 NC_017625.1 PFAM: protein of unknown function DUF1097; KEGG: sbo:SBO_2032 hypothetical protein; hypothetical protein 2779473 12706214 EcDH1_2609 Escherichia coli DH1 hypothetical protein YP_006092534.1 2778952 R 536056 CDS YP_006092535.1 386596135 12706215 complement(2779545..2780099) 1 NC_017625.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfv:SFV_1046 putative oxidoreductase component; cytoplasmic chaperone TorD family protein 2780099 12706215 EcDH1_2610 Escherichia coli DH1 cytoplasmic chaperone TorD family protein YP_006092535.1 2779545 R 536056 CDS YP_006092536.1 386596136 12706216 complement(2780123..2780860) 1 NC_017625.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sbc:SbBS512_E2295 PHP domain protein; PHP domain-containing protein 2780860 12706216 EcDH1_2611 Escherichia coli DH1 PHP domain-containing protein YP_006092536.1 2780123 R 536056 CDS YP_006092537.1 386596137 12706217 complement(2780915..2781853) 1 NC_017625.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ssn:SSON_1042 putative dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2781853 12706217 EcDH1_2612 Escherichia coli DH1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_006092537.1 2780915 R 536056 CDS YP_006092538.1 386596138 12706219 complement(2783091..2784077) 1 NC_017625.1 KEGG: sfv:SFV_1042 hypothetical protein; hypothetical protein 2784077 12706219 EcDH1_2613 Escherichia coli DH1 hypothetical protein YP_006092538.1 2783091 R 536056 CDS YP_006092539.1 386596139 12706220 complement(2784074..2784433) 1 NC_017625.1 KEGG: sfv:SFV_1041 hypothetical protein; (acyl-carrier-protein) S-malonyltransferase-like protein 2784433 12706220 EcDH1_2614 Escherichia coli DH1 (acyl-carrier-protein) S-malonyltransferase-like protein YP_006092539.1 2784074 R 536056 CDS YP_006092540.1 386596140 12706221 2784483..2784782 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein 2784782 12706221 EcDH1_2615 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006092540.1 2784483 D 536056 CDS YP_006092541.1 386596141 12706222 2784779..2785645 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit 2785645 12706222 EcDH1_2616 Escherichia coli DH1 integrase catalytic subunit YP_006092541.1 2784779 D 536056 CDS YP_006092542.1 386596142 12706223 complement(2785686..2787044) 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1377 hypothetical protein; diguanylate cyclase 2787044 12706223 EcDH1_2617 Escherichia coli DH1 diguanylate cyclase YP_006092542.1 2785686 R 536056 CDS YP_006092543.1 386596143 12706225 2788816..2789796 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 2789796 12706225 EcDH1_2619 Escherichia coli DH1 transposase IS4 family protein YP_006092543.1 2788816 D 536056 CDS YP_006092544.1 386596144 12706226 2791262..2793280 1 NC_017625.1 PFAM: polysaccharide deacetylase; KEGG: kpn:KPN_04513 putative polysaccharide deacetylase; polysaccharide deacetylase 2793280 12706226 EcDH1_2620 Escherichia coli DH1 polysaccharide deacetylase YP_006092544.1 2791262 D 536056 CDS YP_006092545.1 386596145 12706227 2793273..2794598 1 NC_017625.1 PFAM: glycosyl transferase family 2; KEGG: sfv:SFV_1033 N-glycosyltransferase PgaC; family 2 glycosyl transferase 2794598 12706227 EcDH1_2621 Escherichia coli DH1 family 2 glycosyl transferase YP_006092545.1 2793273 D 536056 CDS YP_006092546.1 386596146 12706228 2794600..2795013 1 NC_017625.1 KEGG: sfv:SFV_1032 hypothetical protein; hypothetical protein 2795013 12706228 EcDH1_2622 Escherichia coli DH1 hypothetical protein YP_006092546.1 2794600 D 536056 CDS YP_006092547.1 386596147 12706229 complement(2795063..2796127) 1 NC_017625.1 PFAM: PhoH family protein; KEGG: sbc:SbBS512_E2301 protein PhoH; PhoH family protein 2796127 12706229 EcDH1_2623 Escherichia coli DH1 PhoH family protein YP_006092547.1 2795063 R 536056 CDS YP_006092548.1 386596148 12706230 complement(2796472..2797743) 1 NC_017625.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sbo:SBO_2039 hypothetical protein; dyp-type peroxidase family protein 2797743 12706230 EcDH1_2624 Escherichia coli DH1 dyp-type peroxidase family protein YP_006092548.1 2796472 R 536056 CDS YP_006092549.1 386596149 12706231 complement(2797749..2798876) 1 NC_017625.1 KEGG: ssn:SSON_1037 hypothetical protein; hypothetical protein 2798876 12706231 EcDH1_2625 Escherichia coli DH1 hypothetical protein YP_006092549.1 2797749 R 536056 CDS YP_006092550.1 386596150 12706233 complement(2800306..2801814) 1 NC_017625.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: sbo:SBO_2042 major sodium/proline symporter; sodium/proline symporter 2801814 12706233 EcDH1_2627 Escherichia coli DH1 sodium/proline symporter YP_006092550.1 2800306 R 536056 CDS YP_006092551.1 386596151 12706234 2802237..2806199 1 NC_017625.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: ssn:SSON_1034 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 2806199 12706234 EcDH1_2628 Escherichia coli DH1 delta-1-pyrroline-5-carboxylate dehydrogenase YP_006092551.1 2802237 D 536056 CDS YP_006092552.1 386596152 12706235 complement(2806239..2806877) 1 NC_017625.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: sbc:SbBS512_E2305 transcriptional regulator RutR; TetR family transcriptional regulator 2806877 12706235 EcDH1_2629 Escherichia coli DH1 TetR family transcriptional regulator YP_006092552.1 2806239 R 536056 CDS YP_006092553.1 386596153 12706236 2807165..2808256 1 NC_017625.1 PFAM: Luciferase-like monooxygenase; KEGG: sfv:SFV_1024 hypothetical protein; luciferase-like monooxygenase 2808256 12706236 EcDH1_2630 Escherichia coli DH1 luciferase-like monooxygenase YP_006092553.1 2807165 D 536056 CDS YP_006092554.1 386596154 12706237 2808253..2808948 1 NC_017625.1 PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_1030 putative synthetase; isochorismatase hydrolase 2808948 12706237 EcDH1_2631 Escherichia coli DH1 isochorismatase hydrolase YP_006092554.1 2808253 D 536056 CDS YP_006092555.1 386596155 12706238 2808960..2809346 1 NC_017625.1 PFAM: Endoribonuclease L-PSP; KEGG: sdy:SDY_0985 hypothetical protein; endoribonuclease L-PSP 2809346 12706238 EcDH1_2632 Escherichia coli DH1 endoribonuclease L-PSP YP_006092555.1 2808960 D 536056 CDS YP_006092556.1 386596156 12706239 2809354..2810154 1 NC_017625.1 TIGRFAM: alpha/beta hydrolase; PFAM: alpha/beta hydrolase fold; KEGG: ssn:SSON_1027 putative acetyltransferase; alpha/beta hydrolase 2810154 12706239 EcDH1_2633 Escherichia coli DH1 alpha/beta hydrolase YP_006092556.1 2809354 D 536056 CDS YP_006092557.1 386596157 12706240 2810164..2810754 1 NC_017625.1 PFAM: nitroreductase; KEGG: sfv:SFV_1020 hypothetical protein; nitroreductase 2810754 12706240 EcDH1_2634 Escherichia coli DH1 nitroreductase YP_006092557.1 2810164 D 536056 CDS YP_006092558.1 386596158 12706241 2810765..2811259 1 NC_017625.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sfv:SFV_1019 hypothetical protein; flavin reductase domain-containing FMN-binding protein 2811259 12706241 EcDH1_2635 Escherichia coli DH1 flavin reductase domain-containing FMN-binding protein YP_006092558.1 2810765 D 536056 CDS YP_006092559.1 386596159 12706242 2811280..2812608 1 NC_017625.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_1024 putative transport protein; uracil-xanthine permease 2812608 12706242 EcDH1_2636 Escherichia coli DH1 uracil-xanthine permease YP_006092559.1 2811280 D 536056 CDS YP_006092560.1 386596160 12706243 complement(2812865..2813038) 1 NC_017625.1 KEGG: cko:CKO_02046 hypothetical protein; hypothetical protein 2813038 12706243 EcDH1_2637 Escherichia coli DH1 hypothetical protein YP_006092560.1 2812865 R 536056 CDS YP_006092561.1 386596161 12706244 2813411..2814007 1 NC_017625.1 TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: sfv:SFV_1016 TrpR binding protein WrbA; flavoprotein WrbA 2814007 12706244 EcDH1_2638 Escherichia coli DH1 flavoprotein WrbA YP_006092561.1 2813411 D 536056 CDS YP_006092562.1 386596162 12706245 2814028..2814255 1 NC_017625.1 KEGG: sdy:SDY_0979 hypothetical protein; hypothetical protein 2814255 12706245 EcDH1_2639 Escherichia coli DH1 hypothetical protein YP_006092562.1 2814028 D 536056 CDS YP_006092563.1 386596163 12706246 complement(2814293..2815534) 1 NC_017625.1 PFAM: histidine acid phosphatase; KEGG: ssn:SSON_1012 glucose-1-phosphatase/inositol phosphatase; Glucose-1-phosphatase 2815534 12706246 EcDH1_2640 Escherichia coli DH1 Glucose-1-phosphatase YP_006092563.1 2814293 R 536056 CDS YP_006092564.1 386596164 12706247 complement(2815827..2817083) 1 NC_017625.1 KEGG: sfv:SFV_1013 hypothetical protein; hypothetical protein 2817083 12706247 EcDH1_2641 Escherichia coli DH1 hypothetical protein YP_006092564.1 2815827 R 536056 CDS YP_006092565.1 386596165 12706248 2817344..2818264 1 NC_017625.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sbo:SBO_2231 curved DNA-binding protein CbpA; chaperone DnaJ domain-containing protein 2818264 12706248 EcDH1_2642 Escherichia coli DH1 chaperone DnaJ domain-containing protein YP_006092565.1 2817344 D 536056 CDS YP_006092566.1 386596166 12706249 2818264..2818569 1 NC_017625.1 KEGG: sbc:SbBS512_E2315 chaperone-modulator protein CbpM; chaperone-modulator protein CbpM 2818569 12706249 EcDH1_2643 Escherichia coli DH1 chaperone-modulator protein CbpM YP_006092566.1 2818264 D 536056 CDS YP_006092567.1 386596167 12706250 complement(2818721..2819320) 1 NC_017625.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: sbc:SbBS512_E2316 chaperone protein TorD; cytoplasmic chaperone TorD family protein 2819320 12706250 EcDH1_2644 Escherichia coli DH1 cytoplasmic chaperone TorD family protein YP_006092567.1 2818721 R 536056 CDS YP_006092568.1 386596168 12706251 complement(2819317..2821863) 1 NC_017625.1 KEGG: sfv:SFV_1007 trimethylamine N-oxide reductase subunit; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 2821863 12706251 EcDH1_2645 Escherichia coli DH1 molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_006092568.1 2819317 R 536056 CDS YP_006092569.1 386596169 12706252 complement(2821863..2823035) 1 NC_017625.1 TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: ssn:SSON_1004 trimethylamine N-oxide reductase, cytochrome c-type subunit; trimethylamine-N-oxide reductase c-type cytochrome TorC 2823035 12706252 EcDH1_2646 Escherichia coli DH1 trimethylamine-N-oxide reductase c-type cytochrome TorC YP_006092569.1 2821863 R 536056 CDS YP_006092570.1 386596170 12706253 2823165..2823857 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbc:SbBS512_E2320 torCAD operon transcriptional regulatory protein TorR; winged helix family two component transcriptional regulator 2823857 12706253 EcDH1_2647 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006092570.1 2823165 D 536056 CDS YP_006092571.1 386596171 12706254 complement(2823830..2824858) 1 NC_017625.1 TIGRFAM: TMAO reductase system periplasmic protein TorT; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_1002 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 2824858 12706254 EcDH1_2648 Escherichia coli DH1 TMAO reductase system periplasmic protein TorT YP_006092571.1 2823830 R 536056 CDS YP_006092572.1 386596172 12706255 2824986..2827685 1 NC_017625.1 TIGRFAM: TMAO reductase sytem sensor TorS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sbc:SbBS512_E2321 sensor histidine kinase/response regulator TorS; Hpt sensor hybrid histidine kinase 2827685 12706255 EcDH1_2649 Escherichia coli DH1 Hpt sensor hybrid histidine kinase YP_006092572.1 2824986 D 536056 CDS YP_006092573.1 386596173 12706256 2827757..2828830 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2322 4Fe-4S binding domain protein; 4Fe-4S ferredoxin 2828830 12706256 EcDH1_2650 Escherichia coli DH1 4Fe-4S ferredoxin YP_006092573.1 2827757 D 536056 CDS YP_006092574.1 386596174 12706257 complement(2828879..2829052) 1 NC_017625.1 PFAM: GnsAGnsB family protein; KEGG: sbc:SbBS512_E2323 transcriptional regulator, GnsA/GnsB family; GnsAGnsB family protein 2829052 12706257 EcDH1_2651 Escherichia coli DH1 GnsAGnsB family protein YP_006092574.1 2828879 R 536056 CDS YP_006092575.1 386596175 12706258 complement(2829042..2829305) 1 NC_017625.1 KEGG: ssn:SSON_0998 cold shock gene; cold shock protein 2829305 12706258 EcDH1_2652 Escherichia coli DH1 cold shock protein YP_006092575.1 2829042 R 536056 CDS YP_006092576.1 386596176 12706259 complement(2829446..2829658) 1 NC_017625.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sbc:SbBS512_E2326 cold shock DNA-binding protein; cold-shock protein 2829658 12706259 EcDH1_2653 Escherichia coli DH1 cold-shock protein YP_006092576.1 2829446 R 536056 CDS YP_006092577.1 386596177 12706260 2829944..2830156 1 NC_017625.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sdy:SDY_0964 cold shock-like protein; cold-shock protein 2830156 12706260 EcDH1_2654 Escherichia coli DH1 cold-shock protein YP_006092577.1 2829944 D 536056 CDS YP_006092578.1 386596178 12706262 2831375..2831680 1 NC_017625.1 KEGG: sbc:SbBS512_E2328 putative inner membrane protein; putative inner membrane protein 2831680 12706262 EcDH1_2656 Escherichia coli DH1 putative inner membrane protein YP_006092578.1 2831375 D 536056 CDS YP_006092579.1 386596179 12706263 2831787..2832431 1 NC_017625.1 KEGG: sbc:SbBS512_E2329 group 4 capsule (G4C) polysaccharide, lipoprotein YmcC; group 4 capsule (G4C) polysaccharide, lipoprotein YmcC 2832431 12706263 EcDH1_2657 Escherichia coli DH1 group 4 capsule (G4C) polysaccharide, lipoprotein YmcC YP_006092579.1 2831787 D 536056 CDS YP_006092580.1 386596180 12706264 2832428..2833174 1 NC_017625.1 PFAM: protein of unknown function DUF1017; KEGG: ssn:SSON_0992 hypothetical protein; hypothetical protein 2833174 12706264 EcDH1_2658 Escherichia coli DH1 hypothetical protein YP_006092580.1 2832428 D 536056 CDS YP_006092581.1 386596181 12706265 2833174..2835270 1 NC_017625.1 PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: sbo:SBO_2246 hypothetical protein; hypothetical protein 2835270 12706265 EcDH1_2659 Escherichia coli DH1 hypothetical protein YP_006092581.1 2833174 D 536056 CDS YP_006092582.1 386596182 12706266 2835316..2836455 1 NC_017625.1 PFAM: polysaccharide export protein; KEGG: ssn:SSON_0990 putative function in exopolysaccharide production; polysaccharide export protein 2836455 12706266 EcDH1_2660 Escherichia coli DH1 polysaccharide export protein YP_006092582.1 2835316 D 536056 CDS YP_006092583.1 386596183 12706267 2836443..2836889 1 NC_017625.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: sdy:SDY_0958 phosphotyrosine-protein phosphatase; protein tyrosine phosphatase 2836889 12706267 EcDH1_2661 Escherichia coli DH1 protein tyrosine phosphatase YP_006092583.1 2836443 D 536056 CDS YP_006092584.1 386596184 12706268 2836909..2839089 1 NC_017625.1 KEGG: sbo:SBO_2249 cryptic autophosphorylating protein tyrosine kinase Etk; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family protein 2839089 12706268 EcDH1_2662 Escherichia coli DH1 capsular exopolysaccharide family protein YP_006092584.1 2836909 D 536056 CDS YP_006092585.1 386596185 12706269 complement(2839204..2840502) 1 NC_017625.1 PFAM: histidine acid phosphatase; KEGG: ssn:SSON_0987 phosphoanhydride phosphorylase; histidine acid phosphatase 2840502 12706269 EcDH1_2663 Escherichia coli DH1 histidine acid phosphatase YP_006092585.1 2839204 R 536056 CDS YP_006092586.1 386596186 12706270 complement(2840582..2840674) 1 NC_017625.1 PFAM: membrane bound YbgT family protein; KEGG: sbo:SBO_2251 hypothetical protein; membrane bound YbgT family protein 2840674 12706270 EcDH1_2664 Escherichia coli DH1 membrane bound YbgT family protein YP_006092586.1 2840582 R 536056 CDS YP_006092587.1 386596187 12706271 complement(2840687..2841823) 1 NC_017625.1 KEGG: ssn:SSON_0985 probable third cytochrome oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 2841823 12706271 EcDH1_2665 Escherichia coli DH1 cytochrome d ubiquinol oxidase, subunit II YP_006092587.1 2840687 R 536056 CDS YP_006092588.1 386596188 12706272 complement(2841835..2843379) 1 NC_017625.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sfv:SFV_0987 third cytochrome oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 2843379 12706272 EcDH1_2666 Escherichia coli DH1 cytochrome bd ubiquinol oxidase subunit I YP_006092588.1 2841835 R 536056 CDS YP_006092589.1 386596189 12706273 complement(2843513..2844370) 1 NC_017625.1 PFAM: HupH hydrogenase expression protein; KEGG: sbc:SbBS512_E2338 hydrogenase-1 operon protein HyaF; HupH hydrogenase expression protein 2844370 12706273 EcDH1_2667 Escherichia coli DH1 HupH hydrogenase expression protein YP_006092589.1 2843513 R 536056 CDS YP_006092590.1 386596190 12706274 complement(2844367..2844765) 1 NC_017625.1 PFAM: hydrogenase-1 expression HyaE; KEGG: sbc:SbBS512_E2339 hydrogenase-1 expression protein HyaE; hydrogenase-1 expression HyaE 2844765 12706274 EcDH1_2668 Escherichia coli DH1 hydrogenase-1 expression HyaE YP_006092590.1 2844367 R 536056 CDS YP_006092591.1 386596191 12706275 complement(2844762..2845349) 1 NC_017625.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sdy:SDY_0950 hydrogenase 1 maturation protease; hydrogenase expression/formation protein 2845349 12706275 EcDH1_2669 Escherichia coli DH1 hydrogenase expression/formation protein YP_006092591.1 2844762 R 536056 CDS YP_006092592.1 386596192 12706276 complement(2845346..2846053) 1 NC_017625.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: sdy:SDY_0949 hydrogenase 1 b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2846053 12706276 EcDH1_2670 Escherichia coli DH1 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_006092592.1 2845346 R 536056 CDS YP_006092593.1 386596193 12706277 complement(2846072..2847865) 1 NC_017625.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: sbo:SBO_2258 hydrogenase 1 large subunit; nickel-dependent hydrogenase large subunit 2847865 12706277 EcDH1_2671 Escherichia coli DH1 nickel-dependent hydrogenase large subunit YP_006092593.1 2846072 R 536056 CDS YP_006092594.1 386596194 12706278 complement(2847862..2848980) 1 NC_017625.1 KEGG: sdy:SDY_0947 hydrogenase-1 small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 2848980 12706278 EcDH1_2672 Escherichia coli DH1 hydrogenase (NiFe) small subunit HydA YP_006092594.1 2847862 R 536056 CDS YP_006092595.1 386596195 12706280 2849701..2850360 1 NC_017625.1 PFAM: protein of unknown function UPF0005; KEGG: sdy:SDY_0945 hypothetical protein; hypothetical protein 2850360 12706280 EcDH1_2673 Escherichia coli DH1 hypothetical protein YP_006092595.1 2849701 D 536056 CDS YP_006092596.1 386596196 12706281 2850451..2850780 1 NC_017625.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: sbc:SbBS512_E2347 sulfurtransferase TusE; TusE/DsrC/DsvC family sulfur relay protein 2850780 12706281 EcDH1_2674 Escherichia coli DH1 TusE/DsrC/DsvC family sulfur relay protein YP_006092596.1 2850451 D 536056 CDS YP_006092597.1 386596197 12706282 complement(2850777..2851055) 1 NC_017625.1 PFAM: acylphosphatase; KEGG: sdy:SDY_0943 hypothetical protein; acylphosphatase 2851055 12706282 EcDH1_2675 Escherichia coli DH1 acylphosphatase YP_006092597.1 2850777 R 536056 CDS YP_006092598.1 386596198 12706283 2851165..2852340 1 NC_017625.1 PFAM: Protein of unknown function methylase putative; SMART: PUA domain containing protein; KEGG: sbc:SbBS512_E2348 hypothetical protein; hypothetical protein 2852340 12706283 EcDH1_2676 Escherichia coli DH1 hypothetical protein YP_006092598.1 2851165 D 536056 CDS YP_006092599.1 386596199 12706284 2852398..2852715 1 NC_017625.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: sbc:SbBS512_E2349 hemimethylated DNA-binding protein; hemimethylated DNA binding protein 2852715 12706284 EcDH1_2677 Escherichia coli DH1 hemimethylated DNA binding protein YP_006092599.1 2852398 D 536056 CDS YP_006092600.1 386596200 12706285 complement(2852760..2853173) 1 NC_017625.1 PFAM: CoA-binding domain protein; KEGG: sbc:SbBS512_E2350 putative CoA-binding protein; CoA-binding protein 2853173 12706285 EcDH1_2678 Escherichia coli DH1 CoA-binding protein YP_006092600.1 2852760 R 536056 CDS YP_006092601.1 386596201 12706286 2853346..2854008 1 NC_017625.1 KEGG: sdy:SDY_0939 hypothetical protein; hypothetical protein 2854008 12706286 EcDH1_2679 Escherichia coli DH1 hypothetical protein YP_006092601.1 2853346 D 536056 CDS YP_006092602.1 386596202 12706287 2854104..2854562 1 NC_017625.1 KEGG: sdy:SDY_0938 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; methylglyoxal synthase 2854562 12706287 EcDH1_2680 Escherichia coli DH1 methylglyoxal synthase YP_006092602.1 2854104 D 536056 CDS YP_006092603.1 386596203 12706288 complement(2854594..2856648) 1 NC_017625.1 PFAM: UvrD/REP helicase; KEGG: sbc:SbBS512_E2353 helicase IV; UvrD/REP helicase 2856648 12706288 EcDH1_2681 Escherichia coli DH1 UvrD/REP helicase YP_006092603.1 2854594 R 536056 CDS YP_006092604.1 386596204 12706289 2856771..2857217 1 NC_017625.1 PFAM: protein of unknown function DUF307; KEGG: sbc:SbBS512_E2354 hypothetical protein; hypothetical protein 2857217 12706289 EcDH1_2682 Escherichia coli DH1 hypothetical protein YP_006092604.1 2856771 D 536056 CDS YP_006092605.1 386596205 12706290 2857227..2859389 1 NC_017625.1 TIGRFAM: hypothetical protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: ssn:SSON_0964 hypothetical protein; hypothetical protein 2859389 12706290 EcDH1_2683 Escherichia coli DH1 hypothetical protein YP_006092605.1 2857227 D 536056 CDS YP_006092606.1 386596206 12706291 complement(2859352..2859981) 1 NC_017625.1 PFAM: TfoX domain protein; KEGG: sdy:SDY_0934 hypothetical protein; competence-specific genes regulator 2859981 12706291 EcDH1_2684 Escherichia coli DH1 competence-specific genes regulator YP_006092606.1 2859352 R 536056 CDS YP_006092607.1 386596207 12706292 2860200..2860709 1 NC_017625.1 PFAM: cell division inhibitor SulA; KEGG: sbc:SbBS512_E2358 cell division inhibitor SulA; cell division inhibitor SulA 2860709 12706292 EcDH1_2685 Escherichia coli DH1 cell division inhibitor SulA YP_006092607.1 2860200 D 536056 CDS YP_006092608.1 386596208 12706293 2861066..2862106 1 NC_017625.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: sbc:SbBS512_E2359 outer membrane protein A; OmpA domain-containing protein transmembrane region-containing protein 2862106 12706293 EcDH1_2686 Escherichia coli DH1 OmpA domain-containing protein transmembrane region-containing protein YP_006092608.1 2861066 D 536056 CDS YP_006092609.1 386596209 12706294 complement(2862182..2862634) 1 NC_017625.1 PFAM: protein of unknown function DUF1047; KEGG: sdy:SDY_0929 hypothetical protein; hypothetical protein 2862634 12706294 EcDH1_2687 Escherichia coli DH1 hypothetical protein YP_006092609.1 2862182 R 536056 CDS YP_006092610.1 386596210 12706295 2862820..2864580 1 NC_017625.1 KEGG: ssn:SSON_0959 putative ATP-dependent protease; putative ATP-dependent protease 2864580 12706295 EcDH1_2688 Escherichia coli DH1 putative ATP-dependent protease YP_006092610.1 2862820 D 536056 CDS YP_006092611.1 386596211 12706296 2864541..2865167 1 NC_017625.1 KEGG: ypp:YPDSF_1543 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 2865167 12706296 EcDH1_2689 Escherichia coli DH1 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YP_006092611.1 2864541 D 536056 CDS YP_006092612.1 386596212 12706297 complement(2865237..2865404) 1 NC_017625.1 PFAM: ribosome modulation factor; KEGG: sdy:SDY_0926 ribosome modulation factor; ribosome modulation factor 2865404 12706297 EcDH1_2690 Escherichia coli DH1 ribosome modulation factor YP_006092612.1 2865237 R 536056 CDS YP_006092613.1 386596213 12706298 complement(2865660..2866223) 1 NC_017625.1 PFAM: protein of unknown function DUF330; KEGG: sfv:SFV_0961 hypothetical protein; hypothetical protein 2866223 12706298 EcDH1_2691 Escherichia coli DH1 hypothetical protein YP_006092613.1 2865660 R 536056 CDS YP_006092614.1 386596214 12706299 complement(2866220..2867860) 1 NC_017625.1 PFAM: Mammalian cell entry related domain protein; KEGG: sdy:SDY_0924 paraquat-inducible protein B; Mammalian cell entry related domain-containing protein 2867860 12706299 EcDH1_2692 Escherichia coli DH1 Mammalian cell entry related domain-containing protein YP_006092614.1 2866220 R 536056 CDS YP_006092615.1 386596215 12706300 complement(2867865..2869118) 1 NC_017625.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: sbo:SBO_2281 paraquat-inducible protein A; PqiA family integral membrane protein 2869118 12706300 EcDH1_2693 Escherichia coli DH1 PqiA family integral membrane protein YP_006092615.1 2867865 R 536056 CDS YP_006092616.1 386596216 12706301 complement(2869248..2871155) 1 NC_017625.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0953 ABC transporter ATPase component; ABC transporter 2871155 12706301 EcDH1_2694 Escherichia coli DH1 ABC transporter YP_006092616.1 2869248 R 536056 CDS YP_006092617.1 386596217 12706302 complement(2871167..2873275) 1 NC_017625.1 PFAM: putative RNA methylase; THUMP domain protein; Protein of unknown function methylase putative; KEGG: ssn:SSON_0952 putative oxidoreductase; putative RNA methylase 2873275 12706302 EcDH1_2695 Escherichia coli DH1 putative RNA methylase YP_006092617.1 2871167 R 536056 CDS YP_006092618.1 386596218 12706303 2873519..2874628 1 NC_017625.1 PFAM: ferredoxin; MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: sbc:SbBS512_E2371 MOSC domain protein; MOSC domain-containing protein 2874628 12706303 EcDH1_2696 Escherichia coli DH1 MOSC domain-containing protein YP_006092618.1 2873519 D 536056 CDS YP_006092619.1 386596219 12706304 complement(2874625..2875167) 1 NC_017625.1 PFAM: protein of unknown function DUF1379; KEGG: sbc:SbBS512_E2370 hypothetical protein; hypothetical protein 2875167 12706304 EcDH1_2697 Escherichia coli DH1 hypothetical protein YP_006092619.1 2874625 R 536056 CDS YP_006092620.1 386596220 12706305 complement(2875341..2876351) 1 NC_017625.1 PFAM: dihydroorotate dehydrogenase; KEGG: sbc:SbBS512_E2372 dihydroorotate oxidase; Dihydroorotate oxidase 2876351 12706305 EcDH1_2698 Escherichia coli DH1 Dihydroorotate oxidase YP_006092620.1 2875341 R 536056 CDS YP_006092621.1 386596221 12706306 complement(2876462..2877172) 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_0948 hypothetical protein; Pili assembly chaperone, N-terminal 2877172 12706306 EcDH1_2699 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006092621.1 2876462 R 536056 CDS YP_006092622.1 386596222 12706307 complement(2877165..2877728) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: ssn:SSON_0947 putative fimbrial-like protein; Fimbrial protein 2877728 12706307 EcDH1_2700 Escherichia coli DH1 Fimbrial protein YP_006092622.1 2877165 R 536056 CDS YP_006092623.1 386596223 12706308 complement(2877688..2878230) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sbc:SbBS512_E2375 fimbrial protein; Fimbrial protein 2878230 12706308 EcDH1_2701 Escherichia coli DH1 Fimbrial protein YP_006092623.1 2877688 R 536056 CDS YP_006092624.1 386596224 12706309 complement(2878242..2879312) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sbc:SbBS512_E2376 putative fimbrial protein; Fimbrial protein 2879312 12706309 EcDH1_2702 Escherichia coli DH1 Fimbrial protein YP_006092624.1 2878242 R 536056 CDS YP_006092625.1 386596225 12706310 complement(2879303..2881903) 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfv:SFV_0949 putative outer membrane protein; fimbrial biogenesis outer membrane usher protein 2881903 12706310 EcDH1_2703 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006092625.1 2879303 R 536056 CDS YP_006092626.1 386596226 12706311 complement(2881928..2882629) 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_0943 putative chaperone; Pili assembly chaperone, N-terminal 2882629 12706311 EcDH1_2704 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006092626.1 2881928 R 536056 CDS YP_006092627.1 386596227 12706312 complement(2882712..2883251) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sbc:SbBS512_E2380 fimbrial protein; Fimbrial protein 2883251 12706312 EcDH1_2705 Escherichia coli DH1 Fimbrial protein YP_006092627.1 2882712 R 536056 CDS YP_006092628.1 386596228 12706313 2883607..2884182 1 NC_017625.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbc:SbBS512_E2381 NADPH-dependent FMN reductase; FMN reductase 2884182 12706313 EcDH1_2706 Escherichia coli DH1 FMN reductase YP_006092628.1 2883607 D 536056 CDS YP_006092629.1 386596229 12706314 2884175..2885134 1 NC_017625.1 KEGG: sfx:S1000 alkanesulfonate transporter substrate-binding subunit; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter substrate-binding protein 2885134 12706314 EcDH1_2707 Escherichia coli DH1 aliphatic sulfonates ABC transporter substrate-binding protein YP_006092629.1 2884175 D 536056 CDS YP_006092630.1 386596230 12706315 2885131..2886276 1 NC_017625.1 PFAM: Luciferase-like monooxygenase; KEGG: sfx:S0999 alkanesulfonate monooxygenase; Alkanesulfonate monooxygenase 2886276 12706315 EcDH1_2708 Escherichia coli DH1 Alkanesulfonate monooxygenase YP_006092630.1 2885131 D 536056 CDS YP_006092631.1 386596231 12706316 2886287..2887078 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_0937 alkanesulfonate transporter permease subunit; binding-protein-dependent transport system inner membrane protein 2887078 12706316 EcDH1_2709 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092631.1 2886287 D 536056 CDS YP_006092632.1 386596232 12706317 2887075..2887842 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0936 aliphatic sulfonates transport ATP-binding subunit; ABC transporter 2887842 12706317 EcDH1_2710 Escherichia coli DH1 ABC transporter YP_006092632.1 2887075 D 536056 CDS YP_006092633.1 386596233 12706318 complement(2887885..2890497) 1 NC_017625.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sbc:SbBS512_E2386 aminopeptidase N; aminopeptidase N 2890497 12706318 EcDH1_2711 Escherichia coli DH1 aminopeptidase N YP_006092633.1 2887885 R 536056 CDS YP_006092634.1 386596234 12706319 2890763..2891965 1 NC_017625.1 KEGG: sbo:SBO_2222 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; nicotinate phosphoribosyltransferase 2891965 12706319 EcDH1_2712 Escherichia coli DH1 nicotinate phosphoribosyltransferase YP_006092634.1 2890763 D 536056 CDS YP_006092635.1 386596235 12706320 2892134..2893534 1 NC_017625.1 TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sbc:SbBS512_E2388 asparaginyl-tRNA synthetase; asparaginyl-tRNA synthetase 2893534 12706320 EcDH1_2713 Escherichia coli DH1 asparaginyl-tRNA synthetase YP_006092635.1 2892134 D 536056 CDS YP_006092636.1 386596236 12706321 2894137..2895225 1 NC_017625.1 PFAM: porin Gram-negative type; KEGG: sbc:SbBS512_E2389 outer membrane protein F; porin 2895225 12706321 EcDH1_2714 Escherichia coli DH1 porin YP_006092636.1 2894137 D 536056 CDS YP_006092637.1 386596237 12706322 2895410..2896600 1 NC_017625.1 PFAM: aminotransferase class I and II; KEGG: sdy:SDY_2329 aromatic amino acid aminotransferase; aspartate transaminase 2896600 12706322 EcDH1_2715 Escherichia coli DH1 aspartate transaminase YP_006092637.1 2895410 D 536056 CDS YP_006092638.1 386596238 12706323 complement(2896822..2897469) 1 NC_017625.1 PFAM: beta-lactamase domain protein; KEGG: sbo:SBO_2218 hypothetical protein; beta-lactamase 2897469 12706323 EcDH1_2716 Escherichia coli DH1 beta-lactamase YP_006092638.1 2896822 R 536056 CDS YP_006092639.1 386596239 12706324 complement(2897496..2898044) 1 NC_017625.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: sdy:SDY_2331 hypothetical protein; hypothetical protein 2898044 12706324 EcDH1_2717 Escherichia coli DH1 hypothetical protein YP_006092639.1 2897496 R 536056 CDS YP_006092640.1 386596240 12706325 complement(2898225..2900072) 1 NC_017625.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sbo:SBO_2216 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2900072 12706325 EcDH1_2718 Escherichia coli DH1 ErfK/YbiS/YcfS/YnhG family protein YP_006092640.1 2898225 R 536056 CDS YP_006092641.1 386596241 12706326 complement(2900333..2904793) 1 NC_017625.1 PFAM: chromosome segregation and condensation protein MukB domain protein; KEGG: sbc:SbBS512_E2400 chromosome partition protein MukB; chromosome segregation and condensation protein MukB domain protein 2904793 12706326 EcDH1_2719 Escherichia coli DH1 chromosome segregation and condensation protein MukB domain protein YP_006092641.1 2900333 R 536056 CDS YP_006092642.1 386596242 12706327 complement(2904793..2905497) 1 NC_017625.1 PFAM: chromosome segregation and condensation protein MukE; KEGG: sbc:SbBS512_E2401 chromosome partition protein MukE; chromosome segregation and condensation protein MukE 2905497 12706327 EcDH1_2720 Escherichia coli DH1 chromosome segregation and condensation protein MukE YP_006092642.1 2904793 R 536056 CDS YP_006092643.1 386596243 12706328 complement(2905478..2906800) 1 NC_017625.1 PFAM: chromosome segregation and condensation protein MukF; KEGG: sdy:SDY_2336 condesin subunit F; chromosome segregation and condensation protein MukF 2906800 12706328 EcDH1_2721 Escherichia coli DH1 chromosome segregation and condensation protein MukF YP_006092643.1 2905478 R 536056 CDS YP_006092644.1 386596244 12706329 complement(2906797..2907582) 1 NC_017625.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_2337 putative metallothionein SmtA; type 11 methyltransferase 2907582 12706329 EcDH1_2722 Escherichia coli DH1 type 11 methyltransferase YP_006092644.1 2906797 R 536056 CDS YP_006092645.1 386596245 12706330 2907718..2908497 1 NC_017625.1 PFAM: protein of unknown function DUF218; KEGG: sfv:SFV_0921 hypothetical protein; hypothetical protein 2908497 12706330 EcDH1_2723 Escherichia coli DH1 hypothetical protein YP_006092645.1 2907718 D 536056 CDS YP_006092646.1 386596246 12706331 complement(2908474..2909367) 1 NC_017625.1 KEGG: sbc:SbBS512_E2404 hypothetical protein; hypothetical protein 2909367 12706331 EcDH1_2724 Escherichia coli DH1 hypothetical protein YP_006092646.1 2908474 R 536056 CDS YP_006092647.1 386596247 12706332 complement(2909521..2910267) 1 NC_017625.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: sbc:SbBS512_E2406 3-deoxy-D-manno-octulosonate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2910267 12706332 EcDH1_2725 Escherichia coli DH1 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_006092647.1 2909521 R 536056 CDS YP_006092648.1 386596248 12706333 complement(2910264..2910446) 1 NC_017625.1 PFAM: protein of unknown function DUF343; KEGG: sdy:SDY_2341 hypothetical protein; hypothetical protein 2910446 12706333 EcDH1_2726 Escherichia coli DH1 hypothetical protein YP_006092648.1 2910264 R 536056 CDS YP_006092649.1 386596249 12706334 complement(2910498..2911730) 1 NC_017625.1 PFAM: protein of unknown function DUF1006; KEGG: sdy:SDY_2342 hypothetical protein; hypothetical protein 2911730 12706334 EcDH1_2727 Escherichia coli DH1 hypothetical protein YP_006092649.1 2910498 R 536056 CDS YP_006092650.1 386596250 12706335 complement(2911767..2912753) 1 NC_017625.1 KEGG: ssn:SSON_0917 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2912753 12706335 EcDH1_2728 Escherichia coli DH1 tetraacyldisaccharide 4'-kinase YP_006092650.1 2911767 R 536056 CDS YP_006092651.1 386596251 12706336 complement(2912750..2914498) 1 NC_017625.1 KEGG: sdy:SDY_2344 lipid transporter ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2914498 12706336 EcDH1_2729 Escherichia coli DH1 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_006092651.1 2912750 R 536056 CDS YP_006092652.1 386596252 12706337 complement(2914535..2916799) 1 NC_017625.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sdy:SDY_2345 hypothetical protein; DNA internalization-related competence protein ComEC/Rec2 2916799 12706337 EcDH1_2730 Escherichia coli DH1 DNA internalization-related competence protein ComEC/Rec2 YP_006092652.1 2914535 R 536056 CDS YP_006092653.1 386596253 12706338 complement(2917007..2917291) 1 NC_017625.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_2346 integration host factor subunit beta; integration host factor subunit beta 2917291 12706338 EcDH1_2731 Escherichia coli DH1 integration host factor subunit beta YP_006092653.1 2917007 R 536056 CDS YP_006092654.1 386596254 12706339 complement(2917451..2919124) 1 NC_017625.1 TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; KEGG: sbc:SbBS512_E2417 ribosomal protein S1; 30S ribosomal protein S1 2919124 12706339 EcDH1_2732 Escherichia coli DH1 30S ribosomal protein S1 YP_006092654.1 2917451 R 536056 CDS YP_006092655.1 386596255 12706340 complement(2919235..2919918) 1 NC_017625.1 KEGG: sbc:SbBS512_E2418 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 2919918 12706340 EcDH1_2733 Escherichia coli DH1 cytidylate kinase YP_006092655.1 2919235 R 536056 CDS YP_006092656.1 386596256 12706341 complement(2920091..2920855) 1 NC_017625.1 PFAM: peptidase M48 Ste24p; KEGG: ssn:SSON_0911 putative heat shock protein; peptidase M48 Ste24p 2920855 12706341 EcDH1_2734 Escherichia coli DH1 peptidase M48 Ste24p YP_006092656.1 2920091 R 536056 CDS YP_006092657.1 386596257 12706342 complement(2921024..2922307) 1 NC_017625.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: sbc:SbBS512_E2420 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 2922307 12706342 EcDH1_2735 Escherichia coli DH1 3-phosphoshikimate 1-carboxyvinyltransferase YP_006092657.1 2921024 R 536056 CDS YP_006092658.1 386596258 12706343 complement(2922378..2923466) 1 NC_017625.1 KEGG: ssn:SSON_0908 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase 2923466 12706343 EcDH1_2736 Escherichia coli DH1 phosphoserine aminotransferase YP_006092658.1 2922378 R 536056 CDS YP_006092659.1 386596259 12706344 complement(2923665..2924357) 1 NC_017625.1 PFAM: protein of unknown function DUF421; KEGG: sbc:SbBS512_E2422 hypothetical protein; hypothetical protein 2924357 12706344 EcDH1_2737 Escherichia coli DH1 hypothetical protein YP_006092659.1 2923665 R 536056 CDS YP_006092660.1 386596260 12706345 2924487..2926247 1 NC_017625.1 PFAM: protein of unknown function DUF181; KEGG: sbo:SBO_2191 hypothetical protein; hypothetical protein 2926247 12706345 EcDH1_2738 Escherichia coli DH1 hypothetical protein YP_006092660.1 2924487 D 536056 CDS YP_006092661.1 386596261 12706346 2926653..2927510 1 NC_017625.1 PFAM: formate/nitrite transporter; KEGG: sdy:SDY_2357 formate transporter; formate/nitrite transporter 2927510 12706346 EcDH1_2739 Escherichia coli DH1 formate/nitrite transporter YP_006092661.1 2926653 D 536056 CDS YP_006092662.1 386596262 12706347 2927565..2929847 1 NC_017625.1 KEGG: ssn:SSON_0904 formate acetyltransferase 1; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; formate acetyltransferase 2929847 12706347 EcDH1_2740 Escherichia coli DH1 formate acetyltransferase YP_006092662.1 2927565 D 536056 CDS YP_006092663.1 386596263 12706348 2930039..2930779 1 NC_017625.1 KEGG: sdy:SDY_2359 pyruvate formate lyase-activating enzyme 1; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme 2930779 12706348 EcDH1_2741 Escherichia coli DH1 pyruvate formate-lyase activating enzyme YP_006092663.1 2930039 D 536056 CDS YP_006092664.1 386596264 12706349 complement(2930861..2931451) 1 NC_017625.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbo:SBO_2185 hypothetical protein; NAD(P)H dehydrogenase (quinone) 2931451 12706349 EcDH1_2742 Escherichia coli DH1 NAD(P)H dehydrogenase (quinone) YP_006092664.1 2930861 R 536056 CDS YP_006092665.1 386596265 12706350 2931551..2932459 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_2184 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2932459 12706350 EcDH1_2743 Escherichia coli DH1 LysR family transcriptional regulator YP_006092665.1 2931551 D 536056 CDS YP_006092666.1 386596266 12706351 complement(2932460..2933890) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sea:SeAg_B0973 inner membrane transporter YcaM; amino acid permease 2933890 12706351 EcDH1_2744 Escherichia coli DH1 amino acid permease YP_006092666.1 2932460 R 536056 CDS YP_006092667.1 386596267 12706352 complement(2934100..2935248) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_2363 putative MFS family transporter protein; major facilitator superfamily protein 2935248 12706352 EcDH1_2745 Escherichia coli DH1 major facilitator superfamily protein YP_006092667.1 2934100 R 536056 CDS YP_006092668.1 386596268 12706353 2935562..2936188 1 NC_017625.1 PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_0898 hypothetical protein; isochorismatase hydrolase 2936188 12706353 EcDH1_2746 Escherichia coli DH1 isochorismatase hydrolase YP_006092668.1 2935562 D 536056 CDS YP_006092669.1 386596269 12706354 complement(2936223..2937086) 1 NC_017625.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: sbc:SbBS512_E2432 anaerobic dimethyl sulfoxide reductase, C subunit; DMSO reductase anchor subunit DmsC 2937086 12706354 EcDH1_2747 Escherichia coli DH1 DMSO reductase anchor subunit DmsC YP_006092669.1 2936223 R 536056 CDS YP_006092670.1 386596270 12706355 complement(2937088..2937705) 1 NC_017625.1 TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2433 dimethylsulfoxide reductase, B subunit; dimethylsulfoxide reductase subunit B 2937705 12706355 EcDH1_2748 Escherichia coli DH1 dimethylsulfoxide reductase subunit B YP_006092670.1 2937088 R 536056 CDS YP_006092671.1 386596271 12706356 complement(2937716..2940160) 1 NC_017625.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ssn:SSON_0895 anaerobic dimethyl sulfoxide reductase subunit A; anaerobic dimethyl sulfoxide reductase subunit A 2940160 12706356 EcDH1_2749 Escherichia coli DH1 anaerobic dimethyl sulfoxide reductase subunit A YP_006092671.1 2937716 R 536056 CDS YP_006092672.1 386596272 12706357 complement(2940399..2941691) 1 NC_017625.1 KEGG: sbo:SBO_0826 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 2941691 12706357 EcDH1_2750 Escherichia coli DH1 seryl-tRNA synthetase YP_006092672.1 2940399 R 536056 CDS YP_006092673.1 386596273 12706358 complement(2941782..2943125) 1 NC_017625.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sdy:SDY_2369 recombination factor protein RarA; AAA ATPase 2943125 12706358 EcDH1_2751 Escherichia coli DH1 AAA ATPase YP_006092673.1 2941782 R 536056 CDS YP_006092674.1 386596274 12706359 complement(2943136..2943747) 1 NC_017625.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: sdy:SDY_2370 outer-membrane lipoprotein carrier protein; outer membrane lipoprotein carrier protein LolA 2943747 12706359 EcDH1_2752 Escherichia coli DH1 outer membrane lipoprotein carrier protein LolA YP_006092674.1 2943136 R 536056 CDS YP_006092675.1 386596275 12706360 complement(2943906..2947895) 1 NC_017625.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: sfl:SF0849 DNA translocase FtsK; cell division protein FtsK 2947895 12706360 EcDH1_2753 Escherichia coli DH1 cell division protein FtsK YP_006092675.1 2943906 R 536056 CDS YP_006092676.1 386596276 12706361 complement(2948030..2948524) 1 NC_017625.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ent:Ent638_1413 leucine-responsive transcriptional regulator; AsnC family transcriptional regulator 2948524 12706361 EcDH1_2754 Escherichia coli DH1 AsnC family transcriptional regulator YP_006092676.1 2948030 R 536056 CDS YP_006092677.1 386596277 12706362 2949069..2950034 1 NC_017625.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sdy:SDY_2373 thioredoxin reductase; thioredoxin reductase 2950034 12706362 EcDH1_2755 Escherichia coli DH1 thioredoxin reductase YP_006092677.1 2949069 D 536056 CDS YP_006092678.1 386596278 12706363 2950157..2951923 1 NC_017625.1 KEGG: sdy:SDY_2374 cysteine/glutathione ABC transporter membrane/ATP-binding component; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 2951923 12706363 EcDH1_2756 Escherichia coli DH1 cysteine ABC transporter ATP-binding protein/permease YP_006092678.1 2950157 D 536056 CDS YP_006092679.1 386596279 12706364 2951924..2953645 1 NC_017625.1 KEGG: ssn:SSON_0887 cysteine/glutathione ABC transporter membrane/ATP-binding component; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 2953645 12706364 EcDH1_2757 Escherichia coli DH1 cysteine ABC transporter ATP-binding protein/permease YP_006092679.1 2951924 D 536056 CDS YP_006092680.1 386596280 12706365 2953687..2954391 1 NC_017625.1 KEGG: sbc:SbBS512_E2444 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 2954391 12706365 EcDH1_2758 Escherichia coli DH1 leucyl/phenylalanyl-tRNA/protein transferase YP_006092680.1 2953687 D 536056 CDS YP_006092681.1 386596281 12706366 2954676..2954894 1 NC_017625.1 KEGG: cko:CKO_02188 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 2954894 12706366 EcDH1_2759 Escherichia coli DH1 translation initiation factor IF-1 YP_006092681.1 2954676 D 536056 CDS YP_006092682.1 386596282 12706368 complement(2955579..2957855) 1 NC_017625.1 KEGG: ssn:SSON_0883 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2957855 12706368 EcDH1_2760 Escherichia coli DH1 ATP-dependent Clp protease ATP-binding protein ClpA YP_006092682.1 2955579 R 536056 CDS YP_006092683.1 386596283 12706369 complement(2957886..2958206) 1 NC_017625.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: sdy:SDY_2380 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 2958206 12706369 EcDH1_2761 Escherichia coli DH1 ATP-dependent Clp protease adaptor protein ClpS YP_006092683.1 2957886 R 536056 CDS YP_006092684.1 386596284 12706370 2958529..2958753 1 NC_017625.1 KEGG: sdy:SDY_2381 stationary phase/starvation inducible regulatory protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 2958753 12706370 EcDH1_2762 Escherichia coli DH1 cold-shock protein YP_006092684.1 2958529 D 536056 CDS YP_006092685.1 386596285 12706371 complement(2958826..2960772) 1 NC_017625.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2450 macrolide-specific ABC-type efflux carrier protein MacB; ABC transporter 2960772 12706371 EcDH1_2763 Escherichia coli DH1 ABC transporter YP_006092685.1 2958826 R 536056 CDS YP_006092686.1 386596286 12706372 complement(2960769..2961884) 1 NC_017625.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E2451 macrolide-specific efflux protein MacA; RND family efflux transporter MFP subunit 2961884 12706372 EcDH1_2764 Escherichia coli DH1 RND family efflux transporter MFP subunit YP_006092686.1 2960769 R 536056 CDS YP_006092687.1 386596287 12706373 2961999..2962991 1 NC_017625.1 PFAM: protein of unknown function DUF535; KEGG: sbc:SbBS512_E2453 hypothetical protein; hypothetical protein 2962991 12706373 EcDH1_2765 Escherichia coli DH1 hypothetical protein YP_006092687.1 2961999 D 536056 CDS YP_006092688.1 386596288 12706374 complement(2962988..2964646) 1 NC_017625.1 KEGG: sfx:S0876 hypothetical protein; hypothetical protein 2964646 12706374 EcDH1_2766 Escherichia coli DH1 hypothetical protein YP_006092688.1 2962988 R 536056 CDS YP_006092689.1 386596289 12706375 2965072..2965767 1 NC_017625.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sfv:SFV_0863 aquaporin Z; MIP family channel protein 2965767 12706375 EcDH1_2767 Escherichia coli DH1 MIP family channel protein YP_006092689.1 2965072 D 536056 CDS YP_006092690.1 386596290 12706376 2966262..2967161 1 NC_017625.1 PFAM: protein of unknown function DUF340 membrane; KEGG: sbo:SBO_0807 putative surface protein; hypothetical protein 2967161 12706376 EcDH1_2768 Escherichia coli DH1 hypothetical protein YP_006092690.1 2966262 D 536056 CDS YP_006092691.1 386596291 12706377 2967305..2968957 1 NC_017625.1 TIGRFAM: hybrid cluster protein; PFAM: Prismane; KEGG: ssn:SSON_0859 hydroxylamine reductase; hybrid cluster protein 2968957 12706377 EcDH1_2769 Escherichia coli DH1 hybrid cluster protein YP_006092691.1 2967305 D 536056 CDS YP_006092692.1 386596292 12706378 2968969..2969937 1 NC_017625.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sbc:SbBS512_E2459 NADH oxidoreductase hcr; ferredoxin 2969937 12706378 EcDH1_2770 Escherichia coli DH1 ferredoxin YP_006092692.1 2968969 D 536056 CDS YP_006092693.1 386596293 12706379 2970070..2971788 1 NC_017625.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sbc:SbBS512_E2460 pyruvate dehydrogenase (cytochrome); thiamine pyrophosphate TPP binding domain-containing protein 2971788 12706379 EcDH1_2771 Escherichia coli DH1 thiamine pyrophosphate TPP binding domain-containing protein YP_006092693.1 2970070 D 536056 CDS YP_006092694.1 386596294 12706380 2971825..2972826 1 NC_017625.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sfv:SFV_0858 L-threonine aldolase; threonine aldolase 2972826 12706380 EcDH1_2772 Escherichia coli DH1 threonine aldolase YP_006092694.1 2971825 D 536056 CDS YP_006092695.1 386596295 12706381 2972837..2974267 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: sbc:SbBS512_E2462 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2974267 12706381 EcDH1_2773 Escherichia coli DH1 NAD-dependent epimerase/dehydratase YP_006092695.1 2972837 D 536056 CDS YP_006092696.1 386596296 12706382 2974330..2975379 1 NC_017625.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: ssn:SSON_0854 putative nucleotide di-P-sugar epimerase or dehydratase; NAD-dependent epimerase/dehydratase 2975379 12706382 EcDH1_2774 Escherichia coli DH1 NAD-dependent epimerase/dehydratase YP_006092696.1 2974330 D 536056 CDS YP_006092697.1 386596297 12706383 complement(2975376..2976206) 1 NC_017625.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sbc:SbBS512_E2463 N-acetylmuramoyl-L-alanine amidase AmiD; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 2976206 12706383 EcDH1_2775 Escherichia coli DH1 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_006092697.1 2975376 R 536056 CDS YP_006092698.1 386596298 12706384 complement(2976203..2976526) 1 NC_017625.1 PFAM: protein of unknown function DUF74; KEGG: sdy:SDY_2397 hypothetical protein; hypothetical protein 2976526 12706384 EcDH1_2776 Escherichia coli DH1 hypothetical protein YP_006092698.1 2976203 R 536056 CDS YP_006092699.1 386596299 12706385 2976652..2977167 1 NC_017625.1 KEGG: sbc:SbBS512_E2466 putative lipoprotein; putative lipoprotein 2977167 12706385 EcDH1_2777 Escherichia coli DH1 putative lipoprotein YP_006092699.1 2976652 D 536056 CDS YP_006092700.1 386596300 12706386 2977385..2978113 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_2404 arginine transporter ATP-binding subunit; ABC transporter 2978113 12706386 EcDH1_2778 Escherichia coli DH1 ABC transporter YP_006092700.1 2977385 D 536056 CDS YP_006092701.1 386596301 12706387 2978131..2978862 1 NC_017625.1 KEGG: sbc:SbBS512_E2468 arginine ABC transporter, periplasmic arginine-binding protein ArtI; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 2978862 12706387 EcDH1_2779 Escherichia coli DH1 cationic amino acid ABC transporter substrate-binding protein YP_006092701.1 2978131 D 536056 CDS YP_006092702.1 386596302 12706388 2978869..2979585 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_0796 arginine transporter permease subunit ArtQ; polar amino acid ABC transporter inner membrane subunit 2979585 12706388 EcDH1_2780 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006092702.1 2978869 D 536056 CDS YP_006092703.1 386596303 12706389 2979585..2980253 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2470 arginine ABC transporter, permease protein ArtM; polar amino acid ABC transporter inner membrane subunit 2980253 12706389 EcDH1_2781 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006092703.1 2979585 D 536056 CDS YP_006092704.1 386596304 12706390 2980544..2981275 1 NC_017625.1 KEGG: sbo:SBO_0794 arginine 3rd transport system periplasmic binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 2981275 12706390 EcDH1_2782 Escherichia coli DH1 cationic amino acid ABC transporter substrate-binding protein YP_006092704.1 2980544 D 536056 CDS YP_006092705.1 386596305 12706391 complement(2981474..2982601) 1 NC_017625.1 TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (Uracil-5)-methyltransferase; KEGG: ssn:SSON_0844 23S rRNA metyluridine methyltransferase; 23S rRNA (uracil-5-)-methyltransferase RumB 2982601 12706391 EcDH1_2783 Escherichia coli DH1 23S rRNA (uracil-5-)-methyltransferase RumB YP_006092705.1 2981474 R 536056 CDS YP_006092706.1 386596306 12706392 complement(2982642..2983130) 1 NC_017625.1 KEGG: sdy:SDY_0737 hypothetical protein; hypothetical protein 2983130 12706392 EcDH1_2784 Escherichia coli DH1 hypothetical protein YP_006092706.1 2982642 R 536056 CDS YP_006092707.1 386596307 12706393 complement(2983190..2984035) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0738 putrescine transporter subunit: membrane component of ABC superfamily; ornithine carbamoyltransferase 2984035 12706393 EcDH1_2785 Escherichia coli DH1 ornithine carbamoyltransferase YP_006092707.1 2983190 R 536056 CDS YP_006092708.1 386596308 12706394 complement(2984032..2984985) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S0852 putrescine ABC transporter membrane protein; binding-protein-dependent transport system inner membrane protein 2984985 12706394 EcDH1_2786 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092708.1 2984032 R 536056 CDS YP_006092709.1 386596309 12706395 complement(2984995..2986128) 1 NC_017625.1 KEGG: sfx:S0851 putrescine transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 2986128 12706395 EcDH1_2787 Escherichia coli DH1 spermidine/putrescine ABC transporter ATPase YP_006092709.1 2984995 R 536056 CDS YP_006092710.1 386596310 12706396 complement(2986223..2987335) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 1; KEGG: sbc:SbBS512_E2477 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 2987335 12706396 EcDH1_2788 Escherichia coli DH1 extracellular solute-binding protein YP_006092710.1 2986223 R 536056 CDS YP_006092711.1 386596311 12706397 complement(2987686..2988162) 1 NC_017625.1 KEGG: sbc:SbBS512_E2479 tetratricopeptide repeat protein; hypothetical protein 2988162 12706397 EcDH1_2789 Escherichia coli DH1 hypothetical protein YP_006092711.1 2987686 R 536056 CDS YP_006092712.1 386596312 12706398 complement(2988250..2989152) 1 NC_017625.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: sdy:SDY_0743 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 2989152 12706398 EcDH1_2790 Escherichia coli DH1 alpha-L-glutamate ligase YP_006092712.1 2988250 R 536056 CDS YP_006092713.1 386596313 12706399 complement(2989213..2989935) 1 NC_017625.1 PFAM: nitroreductase; KEGG: sdy:SDY_0744 nitroreductase A; nitroreductase 2989935 12706399 EcDH1_2791 Escherichia coli DH1 nitroreductase YP_006092713.1 2989213 R 536056 CDS YP_006092714.1 386596314 12706400 complement(2989919..2990206) 1 NC_017625.1 PFAM: protein of unknown function DUF1418; KEGG: sbc:SbBS512_E2482 hypothetical protein; hypothetical protein 2990206 12706400 EcDH1_2792 Escherichia coli DH1 hypothetical protein YP_006092714.1 2989919 R 536056 CDS YP_006092715.1 386596315 12706401 2990366..2990623 1 NC_017625.1 TIGRFAM: glutaredoxin, GrxA family; PFAM: glutaredoxin; KEGG: sbo:SBO_0783 glutaredoxin 1; GrxA family glutaredoxin 2990623 12706401 EcDH1_2793 Escherichia coli DH1 GrxA family glutaredoxin YP_006092715.1 2990366 D 536056 CDS YP_006092716.1 386596316 12706402 complement(2990653..2991030) 1 NC_017625.1 KEGG: sdy:SDY_0747 hypothetical protein; hypothetical protein 2991030 12706402 EcDH1_2794 Escherichia coli DH1 hypothetical protein YP_006092716.1 2990653 R 536056 CDS YP_006092717.1 386596317 12706403 2991300..2992985 1 NC_017625.1 TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: sbc:SbBS512_E2485 putative transporter; YidE/YbjL duplication 2992985 12706403 EcDH1_2795 Escherichia coli DH1 YidE/YbjL duplication YP_006092717.1 2991300 D 536056 CDS YP_006092718.1 386596318 12706404 complement(2993160..2993696) 1 NC_017625.1 PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E2499 transcriptional regulator, TetR family; TetR family transcriptional regulator 2993696 12706404 EcDH1_2796 Escherichia coli DH1 TetR family transcriptional regulator YP_006092718.1 2993160 R 536056 CDS YP_006092719.1 386596319 12706405 2993780..2994988 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_0741 putative DeoR-type transcriptional regulator; major facilitator superfamily protein 2994988 12706405 EcDH1_2797 Escherichia coli DH1 major facilitator superfamily protein YP_006092719.1 2993780 D 536056 CDS YP_006092720.1 386596320 12706406 2994988..2995803 1 NC_017625.1 KEGG: sfv:SFV_0829 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 2995803 12706406 EcDH1_2798 Escherichia coli DH1 cof family hydrolase YP_006092720.1 2994988 D 536056 CDS YP_006092721.1 386596321 12706407 2995895..2996173 1 NC_017625.1 KEGG: sfv:SFV_0828 hypothetical protein; hypothetical protein 2996173 12706407 EcDH1_2799 Escherichia coli DH1 hypothetical protein YP_006092721.1 2995895 D 536056 CDS YP_006092722.1 386596322 12706408 complement(2996214..2997446) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S0838 chloramphenicol resistance pump Cmr; major facilitator superfamily protein 2997446 12706408 EcDH1_2800 Escherichia coli DH1 major facilitator superfamily protein YP_006092722.1 2996214 R 536056 CDS YP_006092723.1 386596323 12706409 2997731..2998327 1 NC_017625.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: ssn:SSON_0826 undecaprenyl pyrophosphate phosphatase; undecaprenyl-diphosphatase 2998327 12706409 EcDH1_2801 Escherichia coli DH1 undecaprenyl-diphosphatase YP_006092723.1 2997731 D 536056 CDS YP_006092724.1 386596324 12706410 2998385..2999143 1 NC_017625.1 PFAM: regulatory protein DeoR; KEGG: sfv:SFV_0825 DNA-binding transcriptional repressor DeoR; DeoR family transcriptional regulator 2999143 12706410 EcDH1_2802 Escherichia coli DH1 DeoR family transcriptional regulator YP_006092724.1 2998385 D 536056 CDS YP_006092725.1 386596325 12706411 complement(2999190..3000392) 1 NC_017625.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: sbc:SbBS512_E2506 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3000392 12706411 EcDH1_2803 Escherichia coli DH1 serine-type D-Ala-D-Ala carboxypeptidase YP_006092725.1 2999190 R 536056 CDS YP_006092726.1 386596326 12706412 3000639..3001265 1 NC_017625.1 PFAM: Glutathione S-transferase domain; KEGG: sfx:S0831 putative transferase; glutathione S-transferase 3001265 12706412 EcDH1_2804 Escherichia coli DH1 glutathione S-transferase YP_006092726.1 3000639 D 536056 CDS YP_006092727.1 386596327 12706413 complement(3001262..3002377) 1 NC_017625.1 PFAM: glucose sorbosone dehydrogenase; KEGG: sbo:SBO_0733 putative dehydrogenase; glucose sorbosone dehydrogenase 3002377 12706413 EcDH1_2805 Escherichia coli DH1 glucose sorbosone dehydrogenase YP_006092727.1 3001262 R 536056 CDS YP_006092728.1 386596328 12706414 complement(3002488..3002871) 1 NC_017625.1 KEGG: sbc:SbBS512_E2509 biofilm regulator BssR; biofilm regulator BssR 3002871 12706414 EcDH1_2806 Escherichia coli DH1 biofilm regulator BssR YP_006092728.1 3002488 R 536056 CDS YP_006092729.1 386596329 12706415 3003084..3004409 1 NC_017625.1 KEGG: sbo:SBO_0727 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 3004409 12706415 EcDH1_2807 Escherichia coli DH1 MiaB-like tRNA modifying enzyme YliG YP_006092729.1 3003084 D 536056 CDS YP_006092730.1 386596330 12706416 complement(3004456..3005784) 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbo:SBO_0726 hypothetical protein; diguanylate cyclase 3005784 12706416 EcDH1_2808 Escherichia coli DH1 diguanylate cyclase YP_006092730.1 3004456 R 536056 CDS YP_006092731.1 386596331 12706417 complement(3005792..3008140) 1 NC_017625.1 PFAM: EAL domain protein; KEGG: sfv:SFV_0816 hypothetical protein; diguanylate phosphodiesterase 3008140 12706417 EcDH1_2809 Escherichia coli DH1 diguanylate phosphodiesterase YP_006092731.1 3005792 R 536056 CDS YP_006092732.1 386596332 12706418 complement(3008318..3009229) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2516 glutathione ABC transporter, permease protein GsiD; binding-protein-dependent transport system inner membrane protein 3009229 12706418 EcDH1_2810 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092732.1 3008318 R 536056 CDS YP_006092733.1 386596333 12706419 complement(3009232..3010152) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0756 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 3010152 12706419 EcDH1_2811 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006092733.1 3009232 R 536056 CDS YP_006092734.1 386596334 12706420 complement(3010170..3011708) 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_0812 putative transport protein; family 5 extracellular solute-binding protein 3011708 12706420 EcDH1_2812 Escherichia coli DH1 family 5 extracellular solute-binding protein YP_006092734.1 3010170 R 536056 CDS YP_006092735.1 386596335 12706421 complement(3011728..3013599) 1 NC_017625.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2519 glutathione ABC transporter, ATP-binding protein GsiA; ABC transporter 3013599 12706421 EcDH1_2813 Escherichia coli DH1 ABC transporter YP_006092735.1 3011728 R 536056 CDS YP_006092736.1 386596336 12706422 complement(3013586..3014551) 1 NC_017625.1 PFAM: peptidase T2 asparaginase 2; KEGG: ssn:SSON_0810 L-asparaginase; peptidase T2 asparaginase 2 3014551 12706422 EcDH1_2814 Escherichia coli DH1 peptidase T2 asparaginase 2 YP_006092736.1 3013586 R 536056 CDS YP_006092737.1 386596337 12706423 3014755..3015990 1 NC_017625.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sbc:SbBS512_E2521 molybdopterin biosynthesis protein MoeA; molybdenum cofactor synthesis domain-containing protein 3015990 12706423 EcDH1_2815 Escherichia coli DH1 molybdenum cofactor synthesis domain-containing protein YP_006092737.1 3014755 D 536056 CDS YP_006092738.1 386596338 12706424 3015990..3016739 1 NC_017625.1 TIGRFAM: molybdopterin synthase sulfurylase MoeB; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sbc:SbBS512_E2522 molybdopterin synthase sulfurylase MoeB; molybdopterin synthase sulfurylase MoeB 3016739 12706424 EcDH1_2816 Escherichia coli DH1 molybdopterin synthase sulfurylase MoeB YP_006092738.1 3015990 D 536056 CDS YP_006092739.1 386596339 12706425 complement(3016815..3017477) 1 NC_017625.1 KEGG: sfx:S0818 fructose-6-phosphate aldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 3017477 12706425 EcDH1_2817 Escherichia coli DH1 transaldolase YP_006092739.1 3016815 R 536056 CDS YP_006092740.1 386596340 12706426 3017608..3018507 1 NC_017625.1 KEGG: ssn:SSON_0806 putative pyruvate formate-lyase 2 activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family 3018507 12706426 EcDH1_2818 Escherichia coli DH1 glycyl-radical enzyme activating protein family YP_006092740.1 3017608 D 536056 CDS YP_006092741.1 386596341 12706427 3018513..3020945 1 NC_017625.1 KEGG: ssn:SSON_0805 putative formate acetyltransferase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; pyruvate formate-lyase 3020945 12706427 EcDH1_2819 Escherichia coli DH1 pyruvate formate-lyase YP_006092741.1 3018513 D 536056 CDS YP_006092742.1 386596342 12706428 3021091..3021906 1 NC_017625.1 KEGG: sfv:SFV_0805 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 3021906 12706428 EcDH1_2820 Escherichia coli DH1 cof family hydrolase YP_006092742.1 3021091 D 536056 CDS YP_006092743.1 386596343 12706429 3022058..3023323 1 NC_017625.1 PFAM: protein of unknown function DUF1479; KEGG: sbo:SBO_0711 hypothetical protein; hypothetical protein 3023323 12706429 EcDH1_2821 Escherichia coli DH1 hypothetical protein YP_006092743.1 3022058 D 536056 CDS YP_006092744.1 386596344 12706430 complement(3023564..3025156) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2528 ABC transporter, ATP-binding protein; ABC transporter 3025156 12706430 EcDH1_2822 Escherichia coli DH1 ABC transporter YP_006092744.1 3023564 R 536056 CDS YP_006092745.1 386596345 12706431 3025375..3026295 1 NC_017625.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_0777 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3026295 12706431 EcDH1_2823 Escherichia coli DH1 ErfK/YbiS/YcfS/YnhG family protein YP_006092745.1 3025375 D 536056 CDS YP_006092746.1 386596346 12706432 complement(3026354..3027472) 1 NC_017625.1 PFAM: Citrate transporter; KEGG: ssn:SSON_0797 hypothetical protein; citrate transporter 3027472 12706432 EcDH1_2824 Escherichia coli DH1 citrate transporter YP_006092746.1 3026354 R 536056 CDS YP_006092747.1 386596347 12706433 complement(3027469..3027936) 1 NC_017625.1 PFAM: regulatory protein MarR; iron dependent repressor; KEGG: sbc:SbBS512_E2531 transcriptional regulator MntR; DtxR family iron (metal) dependent repressor 3027936 12706433 EcDH1_2825 Escherichia coli DH1 DtxR family iron (metal) dependent repressor YP_006092747.1 3027469 R 536056 CDS YP_006092748.1 386596348 12706434 3028122..3028250 1 NC_017625.1 KEGG: sbc:SbBS512_E2532 hypothetical protein; hypothetical protein 3028250 12706434 EcDH1_2826 Escherichia coli DH1 hypothetical protein YP_006092748.1 3028122 D 536056 CDS YP_006092749.1 386596349 12706435 3028522..3030105 1 NC_017625.1 PFAM: sulfatase; KEGG: sbc:SbBS512_E2533 sulfatase family protein; sulfatase 3030105 12706435 EcDH1_2827 Escherichia coli DH1 sulfatase YP_006092749.1 3028522 D 536056 CDS YP_006092750.1 386596350 12706436 complement(3030154..3030669) 1 NC_017625.1 PFAM: virulence-related outer membrane protein; KEGG: sdy:SDY_0781 outer membrane protein X; virulence-related outer membrane protein 3030669 12706436 EcDH1_2828 Escherichia coli DH1 virulence-related outer membrane protein YP_006092750.1 3030154 R 536056 CDS YP_006092751.1 386596351 12706437 3031022..3031909 1 NC_017625.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbc:SbBS512_E2535 threonine/homoserine efflux transporter RhtA; hypothetical protein 3031909 12706437 EcDH1_2829 Escherichia coli DH1 hypothetical protein YP_006092751.1 3031022 D 536056 CDS YP_006092752.1 386596352 12706438 3032208..3032711 1 NC_017625.1 PFAM: Ferritin Dps family protein; KEGG: sdy:SDY_0783 DNA starvation/stationary phase protection protein Dps; ferritin Dps family protein 3032711 12706438 EcDH1_2830 Escherichia coli DH1 ferritin Dps family protein YP_006092752.1 3032208 D 536056 CDS YP_006092753.1 386596353 12706439 3033115..3033861 1 NC_017625.1 KEGG: sbo:SBO_0702 glutamine ABC transporter periplasmic protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 3033861 12706439 EcDH1_2831 Escherichia coli DH1 cationic amino acid ABC transporter substrate-binding protein YP_006092753.1 3033115 D 536056 CDS YP_006092754.1 386596354 12706440 3034000..3034659 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0786 glutamine ABC transporter permease protein; polar amino acid ABC transporter inner membrane subunit 3034659 12706440 EcDH1_2832 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006092754.1 3034000 D 536056 CDS YP_006092755.1 386596355 12706441 3034656..3035378 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2539 glutamine ABC transporter, ATP-binding protein; ABC transporter 3035378 12706441 EcDH1_2833 Escherichia coli DH1 ABC transporter YP_006092755.1 3034656 D 536056 CDS YP_006092756.1 386596356 12706442 3035639..3037864 1 NC_017625.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ssn:SSON_0788 predicted mechanosensitive channel; mechanosensitive ion channel protein MscS 3037864 12706442 EcDH1_2834 Escherichia coli DH1 mechanosensitive ion channel protein MscS YP_006092756.1 3035639 D 536056 CDS YP_006092757.1 386596357 12706443 complement(3037861..3038787) 1 NC_017625.1 PFAM: protein of unknown function DUF890; KEGG: sbc:SbBS512_E2543 hypothetical protein; hypothetical protein 3038787 12706443 EcDH1_2835 Escherichia coli DH1 hypothetical protein YP_006092757.1 3037861 R 536056 CDS YP_006092758.1 386596358 12706444 3039063..3039323 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E2544 hypothetical protein; hypothetical protein 3039323 12706444 EcDH1_2836 Escherichia coli DH1 hypothetical protein YP_006092758.1 3039063 D 536056 CDS YP_006092759.1 386596359 12706445 3039588..3041870 1 NC_017625.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpe:KPK_3191 catecholate siderophore receptor Fiu; TonB-dependent siderophore receptor 3041870 12706445 EcDH1_2837 Escherichia coli DH1 TonB-dependent siderophore receptor YP_006092759.1 3039588 D 536056 CDS YP_006092760.1 386596360 12706446 3041912..3042589 1 NC_017625.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: sbo:SBO_0692 putative hydroxylase; 2OG-Fe(II) oxygenase 3042589 12706446 EcDH1_2838 Escherichia coli DH1 2OG-Fe(II) oxygenase YP_006092760.1 3041912 D 536056 CDS YP_006092761.1 386596361 12706447 3042663..3042929 1 NC_017625.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: ssn:SSON_0782 hypothetical protein; TraR/DksA family transcriptional regulator 3042929 12706447 EcDH1_2839 Escherichia coli DH1 TraR/DksA family transcriptional regulator YP_006092761.1 3042663 D 536056 CDS YP_006092762.1 386596362 12706448 3043194..3043454 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: sfv:SFV_0785 hypothetical protein; hypothetical protein 3043454 12706448 EcDH1_2840 Escherichia coli DH1 hypothetical protein YP_006092762.1 3043194 D 536056 CDS YP_006092763.1 386596363 12706449 complement(3043683..3044768) 1 NC_017625.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: ssn:SSON_0780 putative dehydrogenase; malate/L-lactate dehydrogenase 3044768 12706449 EcDH1_2841 Escherichia coli DH1 malate/L-lactate dehydrogenase YP_006092763.1 3043683 R 536056 CDS YP_006092764.1 386596364 12706450 complement(3044909..3045871) 1 NC_017625.1 PFAM: Glycosyl transferase, family 3-like; KEGG: sbo:SBO_0688 hypothetical protein; glycosyl transferase family protein 3045871 12706450 EcDH1_2842 Escherichia coli DH1 glycosyl transferase family protein YP_006092764.1 3044909 R 536056 CDS YP_006092765.1 386596365 12706451 complement(3045899..3048049) 1 NC_017625.1 SMART: helicase c2; DEAD-like helicases; KEGG: sbo:SBO_0687 ATP-dependent DNA helicase DinG; helicase c2 3048049 12706451 EcDH1_2843 Escherichia coli DH1 helicase c2 YP_006092765.1 3045899 R 536056 CDS YP_006092766.1 386596366 12706452 3048202..3048651 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E2554 hypothetical protein; hypothetical protein 3048651 12706452 EcDH1_2844 Escherichia coli DH1 hypothetical protein YP_006092766.1 3048202 D 536056 CDS YP_006092767.1 386596367 12706453 complement(3048883..3050247) 1 NC_017625.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbc:SbBS512_E2555 putative ATP-dependent RNA helicase RhlE; DEAD/DEAH box helicase 3050247 12706453 EcDH1_2845 Escherichia coli DH1 DEAD/DEAH box helicase YP_006092767.1 3048883 R 536056 CDS YP_006092768.1 386596368 12706454 3050476..3051147 1 NC_017625.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: sdy:SDY_0807 putative DNA-binding transcriptional regulator; TetR family transcriptional regulator 3051147 12706454 EcDH1_2846 Escherichia coli DH1 TetR family transcriptional regulator YP_006092768.1 3050476 D 536056 CDS YP_006092769.1 386596369 12706455 3051150..3052145 1 NC_017625.1 PFAM: secretion protein HlyD family protein; KEGG: grail3.0617000101; . ; K01993 HlyD family secretion protein; secretion protein HlyD family protein 3052145 12706455 EcDH1_2847 Escherichia coli DH1 secretion protein HlyD family protein YP_006092769.1 3051150 D 536056 CDS YP_006092770.1 386596370 12706456 3052138..3053874 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfl:SF0744 putative ATP-binding component of a transport system; ABC transporter 3053874 12706456 EcDH1_2848 Escherichia coli DH1 ABC transporter YP_006092770.1 3052138 D 536056 CDS YP_006092771.1 386596371 12706457 3053867..3055000 1 NC_017625.1 PFAM: ABC-2 type transporter; KEGG: ssn:SSON_0772 hypothetical protein; ABC transporter 3055000 12706457 EcDH1_2849 Escherichia coli DH1 ABC transporter YP_006092771.1 3053867 D 536056 CDS YP_006092772.1 386596372 12706458 3055011..3056117 1 NC_017625.1 PFAM: ABC-2 type transporter; KEGG: sbc:SbBS512_E2561 ABC-2 type transporter, permease protein; ABC transporter 3056117 12706458 EcDH1_2850 Escherichia coli DH1 ABC transporter YP_006092772.1 3055011 D 536056 CDS YP_006092773.1 386596373 12706459 complement(3056079..3056489) 1 NC_017625.1 KEGG: sbc:SbBS512_E2560 hypothetical protein; hypothetical protein 3056489 12706459 EcDH1_2851 Escherichia coli DH1 hypothetical protein YP_006092773.1 3056079 R 536056 CDS YP_006092774.1 386596374 12706460 3056622..3057383 1 NC_017625.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ssn:SSON_0769 hypothetical protein; endonuclease/exonuclease/phosphatase 3057383 12706460 EcDH1_2852 Escherichia coli DH1 endonuclease/exonuclease/phosphatase YP_006092774.1 3056622 D 536056 CDS YP_006092775.1 386596375 12706461 3057380..3058621 1 NC_017625.1 KEGG: fgenesh3_pg.C_scaffold_3992000001; K06132 putative cardiolipin synthase; hypothetical protein 3058621 12706461 EcDH1_2853 Escherichia coli DH1 hypothetical protein YP_006092775.1 3057380 D 536056 CDS YP_006092776.1 386596376 12706462 3058621..3059577 1 NC_017625.1 KEGG: sbc:SbBS512_E2564 hypothetical protein; hypothetical protein 3059577 12706462 EcDH1_2854 Escherichia coli DH1 hypothetical protein YP_006092776.1 3058621 D 536056 CDS YP_006092777.1 386596377 12706463 complement(3059613..3060326) 1 NC_017625.1 PFAM: protein of unknown function UPF0005; KEGG: sfv:SFV_0770 hypothetical protein; hypothetical protein 3060326 12706463 EcDH1_2855 Escherichia coli DH1 hypothetical protein YP_006092777.1 3059613 R 536056 CDS YP_006092778.1 386596378 12706464 complement(3060531..3061235) 1 NC_017625.1 PFAM: protein of unknown function UPF0005; KEGG: sbc:SbBS512_E2566 hypothetical protein; hypothetical protein 3061235 12706464 EcDH1_2856 Escherichia coli DH1 hypothetical protein YP_006092778.1 3060531 R 536056 CDS YP_006092779.1 386596379 12706465 complement(3061372..3061824) 1 NC_017625.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ssn:SSON_0764 molybdopterin synthase large subunit; molybdopterin biosynthesis protein MoaE 3061824 12706465 EcDH1_2857 Escherichia coli DH1 molybdopterin biosynthesis protein MoaE YP_006092779.1 3061372 R 536056 CDS YP_006092780.1 386596380 12706466 complement(3061826..3062071) 1 NC_017625.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: sbc:SbBS512_E2568 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 3062071 12706466 EcDH1_2858 Escherichia coli DH1 molybdopterin converting factor subunit 1 YP_006092780.1 3061826 R 536056 CDS YP_006092781.1 386596381 12706467 complement(3062064..3062549) 1 NC_017625.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: fgenesh4_pg.C_scaffold_620000002; . ; K03639 molybdenum cofactor biosynthesis protein A; molybdenum cofactor biosynthesis protein C 3062549 12706467 EcDH1_2859 Escherichia coli DH1 molybdenum cofactor biosynthesis protein C YP_006092781.1 3062064 R 536056 CDS YP_006092782.1 386596382 12706468 complement(3062552..3063064) 1 NC_017625.1 TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: sbc:SbBS512_E2570 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 3063064 12706468 EcDH1_2860 Escherichia coli DH1 molybdenum cofactor biosynthesis protein B YP_006092782.1 3062552 R 536056 CDS YP_006092783.1 386596383 12706469 complement(3063086..3064075) 1 NC_017625.1 KEGG: sbo:SBO_0668 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 3064075 12706469 EcDH1_2861 Escherichia coli DH1 molybdenum cofactor biosynthesis protein A YP_006092783.1 3063086 R 536056 CDS YP_006092784.1 386596384 12706470 3064472..3065380 1 NC_017625.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: sbc:SbBS512_E2572 hypothetical protein; hypothetical protein 3065380 12706470 EcDH1_2862 Escherichia coli DH1 hypothetical protein YP_006092784.1 3064472 D 536056 CDS YP_006092785.1 386596385 12706471 complement(3065572..3067593) 1 NC_017625.1 KEGG: sbc:SbBS512_E2573 excinuclease ABC, B subunit; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; SMART: DEAD-like helicases; excinuclease ABC subunit B 3067593 12706471 EcDH1_2863 Escherichia coli DH1 excinuclease ABC subunit B YP_006092785.1 3065572 R 536056 CDS YP_006092786.1 386596386 12706472 complement(3068172..3068849) 1 NC_017625.1 KEGG: ssn:SSON_0757 dithiobiotin synthetase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase 3068849 12706472 EcDH1_2864 Escherichia coli DH1 dethiobiotin synthase YP_006092786.1 3068172 R 536056 CDS YP_006092787.1 386596387 12706473 complement(3068842..3069597) 1 NC_017625.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbc:SbBS512_E2575 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 3069597 12706473 EcDH1_2865 Escherichia coli DH1 biotin biosynthesis protein BioC YP_006092787.1 3068842 R 536056 CDS YP_006092788.1 386596388 12706474 complement(3069584..3070738) 1 NC_017625.1 KEGG: sdy:SDY_0830 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; 8-amino-7-oxononanoate synthase 3070738 12706474 EcDH1_2866 Escherichia coli DH1 8-amino-7-oxononanoate synthase YP_006092788.1 3069584 R 536056 CDS YP_006092789.1 386596389 12706475 complement(3070735..3071775) 1 NC_017625.1 KEGG: ssn:SSON_0754 biotin synthesis; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 3071775 12706475 EcDH1_2867 Escherichia coli DH1 biotin synthase YP_006092789.1 3070735 R 536056 CDS YP_006092790.1 386596390 12706476 3071862..3073151 1 NC_017625.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: ssn:SSON_0753 adenosylmethionine--8-amino-7-oxononanoate transaminase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3073151 12706476 EcDH1_2868 Escherichia coli DH1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_006092790.1 3071862 D 536056 CDS YP_006092791.1 386596391 12706477 3073210..3073686 1 NC_017625.1 PFAM: PEBP family protein; KEGG: ssn:SSON_0752 predicted kinase inhibitor; PEBP family protein 3073686 12706477 EcDH1_2869 Escherichia coli DH1 PEBP family protein YP_006092791.1 3073210 D 536056 CDS YP_006092792.1 386596392 12706478 3073838..3075121 1 NC_017625.1 PFAM: Pectinesterase; KEGG: sbc:SbBS512_E2580 pectinesterase; pectinesterase 3075121 12706478 EcDH1_2870 Escherichia coli DH1 pectinesterase YP_006092792.1 3073838 D 536056 CDS YP_006092793.1 386596393 12706479 complement(3075355..3077616) 1 NC_017625.1 PFAM: aconitate hydratase domain protein; KEGG: sbo:SBO_0658 hypothetical protein; aconitate hydratase 3077616 12706479 EcDH1_2871 Escherichia coli DH1 aconitate hydratase YP_006092793.1 3075355 R 536056 CDS YP_006092794.1 386596394 12706480 complement(3077799..3079232) 1 NC_017625.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: sfv:SFV_0753 putative membrane pump protein; anion transporter 3079232 12706480 EcDH1_2872 Escherichia coli DH1 anion transporter YP_006092794.1 3077799 R 536056 CDS YP_006092795.1 386596395 12706481 complement(3079308..3080360) 1 NC_017625.1 PFAM: protein of unknown function DUF453; KEGG: sfv:SFV_0752 hypothetical protein; hypothetical protein 3080360 12706481 EcDH1_2873 Escherichia coli DH1 hypothetical protein YP_006092795.1 3079308 R 536056 CDS YP_006092796.1 386596396 12706482 3080544..3081497 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E2590 transcriptional regulator, LysR family; LysR family transcriptional regulator 3081497 12706482 EcDH1_2874 Escherichia coli DH1 LysR family transcriptional regulator YP_006092796.1 3080544 D 536056 CDS YP_006092797.1 386596397 12706483 complement(3081538..3082533) 1 NC_017625.1 KEGG: sdy:SDY_2011 6-phosphogluconolactonase; 6-phosphogluconolactonase 3082533 12706483 EcDH1_2875 Escherichia coli DH1 6-phosphogluconolactonase YP_006092797.1 3081538 R 536056 CDS YP_006092798.1 386596398 12706484 3082688..3083506 1 NC_017625.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: sbo:SBO_0621 predicted hydrolase; cof family hydrolase 3083506 12706484 EcDH1_2876 Escherichia coli DH1 cof family hydrolase YP_006092798.1 3082688 D 536056 CDS YP_006092799.1 386596399 12706485 complement(3083507..3084565) 1 NC_017625.1 KEGG: ssn:SSON_0717 molybdate transporter ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 3084565 12706485 EcDH1_2877 Escherichia coli DH1 molybdate ABC transporter ATPase YP_006092799.1 3083507 R 536056 CDS YP_006092800.1 386596400 12706486 complement(3084568..3085257) 1 NC_017625.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0711 molybdate ABC transporter permease protein; molybdate ABC transporter inner membrane subunit 3085257 12706486 EcDH1_2878 Escherichia coli DH1 molybdate ABC transporter inner membrane subunit YP_006092800.1 3084568 R 536056 CDS YP_006092801.1 386596401 12706487 complement(3085257..3086030) 1 NC_017625.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfv:SFV_0577 molybdate transporter periplasmic protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3086030 12706487 EcDH1_2879 Escherichia coli DH1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_006092801.1 3085257 R 536056 CDS YP_006092802.1 386596402 12706488 complement(3086197..3086346) 1 NC_017625.1 KEGG: sdy:SDY_0709 hypothetical protein; hypothetical protein 3086346 12706488 EcDH1_2880 Escherichia coli DH1 hypothetical protein YP_006092802.1 3086197 R 536056 CDS YP_006092803.1 386596403 12706489 3086475..3087263 1 NC_017625.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: sfv:SFV_0579 DNA-binding transcriptional regulator ModE; ModE family transcriptional regulator 3087263 12706489 EcDH1_2881 Escherichia coli DH1 ModE family transcriptional regulator YP_006092803.1 3086475 D 536056 CDS YP_006092804.1 386596404 12706490 3087331..3088803 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0707 putative molybdenum transport ATP-binding protein ModF; ABC transporter 3088803 12706490 EcDH1_2882 Escherichia coli DH1 ABC transporter YP_006092804.1 3087331 D 536056 CDS YP_006092805.1 386596405 12706491 3089064..3090080 1 NC_017625.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ssn:SSON_0711 UDP-galactose-4-epimerase; UDP-glucose 4-epimerase 3090080 12706491 EcDH1_2883 Escherichia coli DH1 UDP-glucose 4-epimerase YP_006092805.1 3089064 D 536056 CDS YP_006092806.1 386596406 12706492 3090090..3091136 1 NC_017625.1 KEGG: ssn:SSON_0710 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase 3091136 12706492 EcDH1_2884 Escherichia coli DH1 galactose-1-phosphate uridylyltransferase YP_006092806.1 3090090 D 536056 CDS YP_006092807.1 386596407 12706493 3091140..3092288 1 NC_017625.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sdy:SDY_0704 galactokinase; galactokinase 3092288 12706493 EcDH1_2885 Escherichia coli DH1 galactokinase YP_006092807.1 3091140 D 536056 CDS YP_006092808.1 386596408 12706494 3092282..3093322 1 NC_017625.1 KEGG: sbc:SbBS512_E0677 galactose mutarotase; TIGRFAM: galactose mutarotase; PFAM: Aldose 1-epimerase; galactose mutarotase 3093322 12706494 EcDH1_2886 Escherichia coli DH1 galactose mutarotase YP_006092808.1 3092282 D 536056 CDS YP_006092809.1 386596409 12706495 3093524..3094276 1 NC_017625.1 KEGG: sbc:SbBS512_E0676 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3094276 12706495 EcDH1_2887 Escherichia coli DH1 phosphoglycerate mutase YP_006092809.1 3093524 D 536056 CDS YP_006092810.1 386596410 12706496 complement(3094434..3095486) 1 NC_017625.1 KEGG: sdy:SDY_0701 phospho-2-dehydro-3-heoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 3095486 12706496 EcDH1_2888 Escherichia coli DH1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_006092810.1 3094434 R 536056 CDS YP_006092811.1 386596411 12706497 3095802..3096182 1 NC_017625.1 KEGG: sfv:SFV_0587 putative homeobox protein; putative homeobox protein 3096182 12706497 EcDH1_2889 Escherichia coli DH1 putative homeobox protein YP_006092811.1 3095802 D 536056 CDS YP_006092812.1 386596412 12706498 3096296..3097237 1 NC_017625.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sdy:SDY_0696 zinc transporter ZitB; cation diffusion facilitator family transporter 3097237 12706498 EcDH1_2890 Escherichia coli DH1 cation diffusion facilitator family transporter YP_006092812.1 3096296 D 536056 CDS YP_006092813.1 386596413 12706499 complement(3097234..3097953) 1 NC_017625.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: ssn:SSON_0703 required for NMN transport; nicotinamide mononucleotide transporter PnuC 3097953 12706499 EcDH1_2891 Escherichia coli DH1 nicotinamide mononucleotide transporter PnuC YP_006092813.1 3097234 R 536056 CDS YP_006092814.1 386596414 12706500 complement(3097991..3099034) 1 NC_017625.1 KEGG: sbc:SbBS512_E0671 quinolinate synthetase complex, A subunit; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A 3099034 12706500 EcDH1_2892 Escherichia coli DH1 quinolinate synthetase complex subunit A YP_006092814.1 3097991 R 536056 CDS YP_006092815.1 386596415 12706508 complement(3100730..3101521) 1 NC_017625.1 TIGRFAM: tol-pal system protein YbgF; KEGG: sdy:SDY_0690 hypothetical protein; tol-pal system protein YbgF 3101521 12706508 EcDH1_2893 Escherichia coli DH1 tol-pal system protein YbgF YP_006092815.1 3100730 R 536056 CDS YP_006092816.1 386596416 12706509 complement(3101531..3102052) 1 NC_017625.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: sbc:SbBS512_E0663 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein 3102052 12706509 EcDH1_2894 Escherichia coli DH1 peptidoglycan-associated lipoprotein YP_006092816.1 3101531 R 536056 CDS YP_006092817.1 386596417 12706510 complement(3102087..3103379) 1 NC_017625.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: ssn:SSON_0692 translocation protein TolB; Tol-Pal system beta propeller repeat-containing protein TolB 3103379 12706510 EcDH1_2895 Escherichia coli DH1 Tol-Pal system beta propeller repeat-containing protein TolB YP_006092817.1 3102087 R 536056 CDS YP_006092818.1 386596418 12706511 complement(3103512..3104777) 1 NC_017625.1 TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; protein TolA 3104777 12706511 EcDH1_2896 Escherichia coli DH1 protein TolA YP_006092818.1 3103512 R 536056 CDS YP_006092819.1 386596419 12706512 complement(3104842..3105270) 1 NC_017625.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; protein TolR 3105270 12706512 EcDH1_2897 Escherichia coli DH1 protein TolR YP_006092819.1 3104842 R 536056 CDS YP_006092820.1 386596420 12706513 complement(3105274..3105966) 1 NC_017625.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbc:SbBS512_E0659 protein TolQ; protein TolQ 3105966 12706513 EcDH1_2898 Escherichia coli DH1 protein TolQ YP_006092820.1 3105274 R 536056 CDS YP_006092821.1 386596421 12706514 complement(3105963..3106367) 1 NC_017625.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: sbo:SBO_0595 acyl-CoA thioester hydrolase YbgC; tol-pal system-associated acyl-CoA thioesterase 3106367 12706514 EcDH1_2899 Escherichia coli DH1 tol-pal system-associated acyl-CoA thioesterase YP_006092821.1 3105963 R 536056 CDS YP_006092822.1 386596422 12706515 complement(3106517..3106810) 1 NC_017625.1 TIGRFAM: cyd operon protein YbgE; PFAM: Cyd operon protein YbgE; KEGG: sdy:SDY_0683 hypothetical protein; cyd operon protein YbgE 3106810 12706515 EcDH1_2900 Escherichia coli DH1 cyd operon protein YbgE YP_006092822.1 3106517 R 536056 CDS YP_006092823.1 386596423 12706516 complement(3106810..3106923) 1 NC_017625.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: sdy:SDY_0682 putative outer membrane lipoprotein; cyd operon protein YbgT 3106923 12706516 EcDH1_2901 Escherichia coli DH1 cyd operon protein YbgT YP_006092823.1 3106810 R 536056 CDS YP_006092824.1 386596424 12706517 complement(3106938..3108077) 1 NC_017625.1 KEGG: sbc:SbBS512_E0655 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 3108077 12706517 EcDH1_2902 Escherichia coli DH1 cytochrome d ubiquinol oxidase, subunit II YP_006092824.1 3106938 R 536056 CDS YP_006092825.1 386596425 12706518 complement(3108093..3109661) 1 NC_017625.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sbc:SbBS512_E0654 cytochrome d ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 3109661 12706518 EcDH1_2903 Escherichia coli DH1 cytochrome bd ubiquinol oxidase subunit I YP_006092825.1 3108093 R 536056 CDS YP_006092826.1 386596426 12706519 complement(3110508..3113141) 1 NC_017625.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; KEGG: sfv:SFV_0604 alpha-mannosidase; glycoside hydrolase family protein 3113141 12706519 EcDH1_2904 Escherichia coli DH1 glycoside hydrolase family protein YP_006092826.1 3110508 R 536056 CDS YP_006092827.1 386596427 12706520 complement(3113159..3115075) 1 NC_017625.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: ssn:SSON_0682 2-O-A-mannosyl-D-glycerate specific PTS transporten components IIABC; PTS system fructose subfamily transporter subunit IIC 3115075 12706520 EcDH1_2905 Escherichia coli DH1 PTS system fructose subfamily transporter subunit IIC YP_006092827.1 3113159 R 536056 CDS YP_006092828.1 386596428 12706521 3115244..3115966 1 NC_017625.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sbo:SBO_0588 DNA-binding transcriptional dual regulator, fatty-acyl-binding; GntR family transcriptional regulator 3115966 12706521 EcDH1_2906 Escherichia coli DH1 GntR family transcriptional regulator YP_006092828.1 3115244 D 536056 CDS YP_006092829.1 386596429 12706522 complement(3116070..3116939) 1 NC_017625.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: sbc:SbBS512_E0648 succinate-CoA ligase, alpha subunit; succinyl-CoA synthetase subunit alpha 3116939 12706522 EcDH1_2907 Escherichia coli DH1 succinyl-CoA synthetase subunit alpha YP_006092829.1 3116070 R 536056 CDS YP_006092830.1 386596430 12706523 complement(3116939..3118105) 1 NC_017625.1 KEGG: ssn:SSON_0679 succinyl-CoA synthetase subunit beta; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase subunit beta 3118105 12706523 EcDH1_2908 Escherichia coli DH1 succinyl-CoA synthetase subunit beta YP_006092830.1 3116939 R 536056 CDS YP_006092831.1 386596431 12706524 complement(3118380..3119597) 1 NC_017625.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: ssn:SSON_0678 dihydrolipoamide acetyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 3119597 12706524 EcDH1_2909 Escherichia coli DH1 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_006092831.1 3118380 R 536056 CDS YP_006092832.1 386596432 12706525 complement(3119612..3122413) 1 NC_017625.1 KEGG: sbc:SbBS512_E0645 oxoglutarate dehydrogenase (succinyl-transferring), E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; Transketolase central region; 2-oxoglutarate dehydrogenase, E1 subunit 3122413 12706525 EcDH1_2910 Escherichia coli DH1 2-oxoglutarate dehydrogenase, E1 subunit YP_006092832.1 3119612 R 536056 CDS YP_006092833.1 386596433 12706526 complement(3122714..3123430) 1 NC_017625.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: sbc:SbBS512_E0643 succinate dehydrogenase, iron-sulfur subunit; succinate dehydrogenase and fumarate reductase iron-sulfur protein 3123430 12706526 EcDH1_2911 Escherichia coli DH1 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_006092833.1 3122714 R 536056 CDS YP_006092834.1 386596434 12706527 complement(3123446..3125212) 1 NC_017625.1 KEGG: sbo:SBO_0581 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase, flavoprotein subunit 3125212 12706527 EcDH1_2912 Escherichia coli DH1 succinate dehydrogenase, flavoprotein subunit YP_006092834.1 3123446 R 536056 CDS YP_006092835.1 386596435 12706528 complement(3125212..3125559) 1 NC_017625.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: sdy:SDY_0660 succinate dehydrogenase cytochrome b556 small membrane subunit; succinate dehydrogenase, hydrophobic membrane anchor protein 3125559 12706528 EcDH1_2913 Escherichia coli DH1 succinate dehydrogenase, hydrophobic membrane anchor protein YP_006092835.1 3125212 R 536056 CDS YP_006092836.1 386596436 12706529 complement(3125553..3125957) 1 NC_017625.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sbc:SbBS512_E0640 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit 3125957 12706529 EcDH1_2914 Escherichia coli DH1 succinate dehydrogenase, cytochrome b556 subunit YP_006092836.1 3125553 R 536056 CDS YP_006092837.1 386596437 12706530 3126338..3126445 1 NC_017625.1 hypothetical protein 3126445 12706530 EcDH1_2915 Escherichia coli DH1 hypothetical protein YP_006092837.1 3126338 D 536056 CDS YP_006092838.1 386596438 12706531 3126651..3127934 1 NC_017625.1 KEGG: sbc:SbBS512_E0638 citrate (Si)-synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 3127934 12706531 EcDH1_2916 Escherichia coli DH1 citrate synthase I YP_006092838.1 3126651 D 536056 CDS YP_006092839.1 386596439 12706532 3128324..3128890 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sdy:SDY_0655 putative fimbrial-like protein; Fimbrial protein 3128890 12706532 EcDH1_2917 Escherichia coli DH1 Fimbrial protein YP_006092839.1 3128324 D 536056 CDS YP_006092840.1 386596440 12706533 3128941..3131397 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sbc:SbBS512_E0635 fimbrial usher family protein; fimbrial biogenesis outer membrane usher protein 3131397 12706533 EcDH1_2918 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006092840.1 3128941 D 536056 CDS YP_006092841.1 386596441 12706534 3131412..3132140 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sbc:SbBS512_E0634 periplasmic pilus chaperone family protein; Pili assembly chaperone, N-terminal 3132140 12706534 EcDH1_2919 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006092841.1 3131412 D 536056 CDS YP_006092842.1 386596442 12706535 3132137..3133198 1 NC_017625.1 KEGG: ssn:SSON_0667 hypothetical protein; hypothetical protein 3133198 12706535 EcDH1_2920 Escherichia coli DH1 hypothetical protein YP_006092842.1 3132137 D 536056 CDS YP_006092843.1 386596443 12706536 3133350..3134396 1 NC_017625.1 TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: sdy:SDY_0650 putative transport protein; membrane protein AbrB 3134396 12706536 EcDH1_2921 Escherichia coli DH1 membrane protein AbrB YP_006092843.1 3133350 D 536056 CDS YP_006092844.1 386596444 12706537 complement(3134393..3135184) 1 NC_017625.1 PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: ssn:SSON_0665 endonuclease VIII; DNA-(apurinic or apyrimidinic site) lyase 3135184 12706537 EcDH1_2922 Escherichia coli DH1 DNA-(apurinic or apyrimidinic site) lyase YP_006092844.1 3134393 R 536056 CDS YP_006092845.1 386596445 12706538 complement(3135220..3135954) 1 NC_017625.1 PFAM: LamB/YcsF family protein; KEGG: ssn:SSON_0664 hypothetical protein; LamB/YcsF family protein 3135954 12706538 EcDH1_2923 Escherichia coli DH1 LamB/YcsF family protein YP_006092845.1 3135220 R 536056 CDS YP_006092846.1 386596446 12706539 complement(3135944..3136876) 1 NC_017625.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sbc:SbBS512_E0629 allophanate hydrolase, subunit 2; urea amidolyase-like protein 3136876 12706539 EcDH1_2924 Escherichia coli DH1 urea amidolyase-like protein YP_006092846.1 3135944 R 536056 CDS YP_006092847.1 386596447 12706540 complement(3136870..3137526) 1 NC_017625.1 PFAM: Allophanate hydrolase subunit 1; KEGG: sbc:SbBS512_E0628 allophanate hydrolase, subunit 1; allophanate hydrolase subunit 1 3137526 12706540 EcDH1_2925 Escherichia coli DH1 allophanate hydrolase subunit 1 YP_006092847.1 3136870 R 536056 CDS YP_006092848.1 386596448 12706541 complement(3137549..3138292) 1 NC_017625.1 PFAM: protein of unknown function DUF34; KEGG: sbc:SbBS512_E0627 NIF3 family protein; hypothetical protein 3138292 12706541 EcDH1_2926 Escherichia coli DH1 hypothetical protein YP_006092848.1 3137549 R 536056 CDS YP_006092849.1 386596449 12706542 3138563..3140044 1 NC_017625.1 KEGG: sfx:S0601 putative transport protein; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter 3140044 12706542 EcDH1_2927 Escherichia coli DH1 amino acid/peptide transporter YP_006092849.1 3138563 D 536056 CDS YP_006092850.1 386596450 12706543 complement(3140194..3141612) 1 NC_017625.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: ssn:SSON_0657 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 3141612 12706543 EcDH1_2928 Escherichia coli DH1 deoxyribodipyrimidine photo-lyase YP_006092850.1 3140194 R 536056 CDS YP_006092851.1 386596451 12706544 complement(3141609..3142118) 1 NC_017625.1 PFAM: Protein of unknown function DUF1722; KEGG: sbc:SbBS512_E0624 hypothetical protein; hypothetical protein 3142118 12706544 EcDH1_2929 Escherichia coli DH1 hypothetical protein YP_006092851.1 3141609 R 536056 CDS YP_006092852.1 386596452 12706545 complement(3142266..3143027) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 putative receptor; transposase IS4 family protein 3143027 12706545 EcDH1_2930 Escherichia coli DH1 transposase IS4 family protein YP_006092852.1 3142266 R 536056 CDS YP_006092853.1 386596453 12706548 complement(3144900..3145469) 1 NC_017625.1 hypothetical protein 3145469 12706548 EcDH1_2933 Escherichia coli DH1 hypothetical protein YP_006092853.1 3144900 R 536056 CDS YP_006092854.1 386596454 12706549 complement(3145466..3146899) 1 NC_017625.1 PFAM: RHS protein; YD repeat-containing protein; KEGG: ssn:SSON_0655 RhsA protein in rhs element; RHS protein 3146899 12706549 EcDH1_2934 Escherichia coli DH1 RHS protein YP_006092854.1 3145466 R 536056 CDS YP_006092855.1 386596455 12706550 complement(3147017..3147343) 1 NC_017625.1 hypothetical protein 3147343 12706550 EcDH1_2935 Escherichia coli DH1 hypothetical protein YP_006092855.1 3147017 R 536056 CDS YP_006092856.1 386596456 12706551 complement(3147343..3151536) 1 NC_017625.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein 3151536 12706551 EcDH1_2936 Escherichia coli DH1 YD repeat protein YP_006092856.1 3147343 R 536056 CDS YP_006092857.1 386596457 12706552 complement(3151779..3151985) 1 NC_017625.1 KEGG: sdy:SDY_0635 hypothetical protein; hypothetical protein 3151985 12706552 EcDH1_2937 Escherichia coli DH1 hypothetical protein YP_006092857.1 3151779 R 536056 CDS YP_006092858.1 386596458 12706553 3152387..3154060 1 NC_017625.1 KEGG: sbo:SBO_0560 potassium-transporting ATPase subunit A; TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A 3154060 12706553 EcDH1_2938 Escherichia coli DH1 potassium-transporting ATPase subunit A YP_006092858.1 3152387 D 536056 CDS YP_006092859.1 386596459 12706554 3154083..3156131 1 NC_017625.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ssn:SSON_0648 potassium-transporting ATPase subunit B; K+-transporting ATPase subunit B 3156131 12706554 EcDH1_2939 Escherichia coli DH1 K+-transporting ATPase subunit B YP_006092859.1 3154083 D 536056 CDS YP_006092860.1 386596460 12706555 3156140..3156712 1 NC_017625.1 KEGG: ssn:SSON_0647 potassium-transporting ATPase subunit C; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C 3156712 12706555 EcDH1_2940 Escherichia coli DH1 potassium-transporting ATPase subunit C YP_006092860.1 3156140 D 536056 CDS YP_006092861.1 386596461 12706556 3156705..3159389 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: ssn:SSON_0646 sensor protein KdpD; osmosensitive K+ channel signal transduction histidine kinase 3159389 12706556 EcDH1_2941 Escherichia coli DH1 osmosensitive K+ channel signal transduction histidine kinase YP_006092861.1 3156705 D 536056 CDS YP_006092862.1 386596462 12706557 3159386..3160063 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_0645 DNA-binding response regulator in two-component regulatory system with KdpD; winged helix family two component transcriptional regulator 3160063 12706557 EcDH1_2942 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006092862.1 3159386 D 536056 CDS YP_006092863.1 386596463 12706558 complement(3160279..3160536) 1 NC_017625.1 KEGG: sbo:SBO_0555 hypothetical protein; hypothetical protein 3160536 12706558 EcDH1_2943 Escherichia coli DH1 hypothetical protein YP_006092863.1 3160279 R 536056 CDS YP_006092864.1 386596464 12706559 3160659..3162857 1 NC_017625.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sbo:SBO_0554 ornithine decarboxylase isozyme, inducible; Ornithine decarboxylase 3162857 12706559 EcDH1_2944 Escherichia coli DH1 Ornithine decarboxylase YP_006092864.1 3160659 D 536056 CDS YP_006092865.1 386596465 12706560 3162854..3164173 1 NC_017625.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: ssn:SSON_0643 putrescine transport protein; arginine/ornithine antiporter 3164173 12706560 EcDH1_2945 Escherichia coli DH1 arginine/ornithine antiporter YP_006092865.1 3162854 D 536056 CDS YP_006092866.1 386596466 12706563 complement(3165213..3165707) 1 NC_017625.1 KEGG: sbo:SBO_0551 putative pectinase; putative pectinase 3165707 12706563 EcDH1_2948 Escherichia coli DH1 putative pectinase YP_006092866.1 3165213 R 536056 CDS YP_006092867.1 386596467 12706564 complement(3165921..3167561) 1 NC_017625.1 TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sbc:SbBS512_E0562 phosphoglucomutase, alpha-D-glucose phosphate-specific; phosphoglucomutase, alpha-D-glucose phosphate-specific 3167561 12706564 EcDH1_2949 Escherichia coli DH1 phosphoglucomutase, alpha-D-glucose phosphate-specific YP_006092867.1 3165921 R 536056 CDS YP_006092868.1 386596468 12706565 complement(3167587..3168132) 1 NC_017625.1 PFAM: SeqA family protein; KEGG: sbc:SbBS512_E0563 protein SeqA; SeqA family protein 3168132 12706565 EcDH1_2950 Escherichia coli DH1 SeqA family protein YP_006092868.1 3167587 R 536056 CDS YP_006092869.1 386596469 12706566 3168317..3169081 1 NC_017625.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: sdy:SDY_0626 hypothetical protein; alpha/beta hydrolase fold protein 3169081 12706566 EcDH1_2951 Escherichia coli DH1 alpha/beta hydrolase fold protein YP_006092869.1 3168317 D 536056 CDS YP_006092870.1 386596470 12706567 3169152..3169514 1 NC_017625.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: sdy:SDY_0625 LexA regulated protein; CopG family transcriptional regulator 3169514 12706567 EcDH1_2952 Escherichia coli DH1 CopG family transcriptional regulator YP_006092870.1 3169152 D 536056 CDS YP_006092871.1 386596471 12706568 3169654..3170184 1 NC_017625.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_0624 flavodoxin FldA; flavodoxin 3170184 12706568 EcDH1_2953 Escherichia coli DH1 flavodoxin YP_006092871.1 3169654 D 536056 CDS YP_006092872.1 386596472 12706569 3170473..3170919 1 NC_017625.1 PFAM: ferric-uptake regulator; KEGG: sdy:SDY_0623 ferric uptake regulator; ferric uptake regulator family protein 3170919 12706569 EcDH1_2954 Escherichia coli DH1 ferric uptake regulator family protein YP_006092872.1 3170473 D 536056 CDS YP_006092873.1 386596473 12706570 complement(3171003..3171329) 1 NC_017625.1 KEGG: sfl:SF0611 hypothetical protein; hypothetical protein 3171329 12706570 EcDH1_2955 Escherichia coli DH1 hypothetical protein YP_006092873.1 3171003 R 536056 CDS YP_006092874.1 386596474 12706571 complement(3171379..3172785) 1 NC_017625.1 PFAM: outer membrane porin; KEGG: sbc:SbBS512_E0569 outer membrane porin, OprD family; outer membrane porin 3172785 12706571 EcDH1_2956 Escherichia coli DH1 outer membrane porin YP_006092874.1 3171379 R 536056 CDS YP_006092875.1 386596475 12706572 complement(3173362..3175026) 1 NC_017625.1 TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: ssn:SSON_0634 glutaminyl-tRNA synthetase; glutaminyl-tRNA synthetase 3175026 12706572 EcDH1_2957 Escherichia coli DH1 glutaminyl-tRNA synthetase YP_006092875.1 3173362 R 536056 CDS YP_006092876.1 386596476 12706573 complement(3175229..3177175) 1 NC_017625.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sfv:SFV_0652 N-acetyl glucosamine specific PTS system components IIABC; PTS system N-acetylglucosamine-specific transporter subunit IIBC 3177175 12706573 EcDH1_2958 Escherichia coli DH1 PTS system N-acetylglucosamine-specific transporter subunit IIBC YP_006092876.1 3175229 R 536056 CDS YP_006092877.1 386596477 12706574 3177508..3178308 1 NC_017625.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sbc:SbBS512_E0573 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 3178308 12706574 EcDH1_2959 Escherichia coli DH1 glucosamine-6-phosphate isomerase YP_006092877.1 3177508 D 536056 CDS YP_006092878.1 386596478 12706575 3178368..3179516 1 NC_017625.1 KEGG: sbc:SbBS512_E0574 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 3179516 12706575 EcDH1_2960 Escherichia coli DH1 N-acetylglucosamine-6-phosphate deacetylase YP_006092878.1 3178368 D 536056 CDS YP_006092879.1 386596479 12706576 3179525..3180745 1 NC_017625.1 PFAM: ROK family protein; KEGG: sdy:SDY_0610 transcriptional repressor of N-acetylglucosamine operon; ROK family protein 3180745 12706576 EcDH1_2961 Escherichia coli DH1 ROK family protein YP_006092879.1 3179525 D 536056 CDS YP_006092880.1 386596480 12706577 3180793..3181545 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdy:SDY_0609 UMP phosphatase; HAD-superfamily hydrolase 3181545 12706577 EcDH1_2962 Escherichia coli DH1 HAD-superfamily hydrolase YP_006092880.1 3180793 D 536056 CDS YP_006092881.1 386596481 12706578 3181942..3183606 1 NC_017625.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: sfv:SFV_0657 asparagine synthetase B; asparagine synthase 3183606 12706578 EcDH1_2963 Escherichia coli DH1 asparagine synthase YP_006092881.1 3181942 D 536056 CDS YP_006092882.1 386596482 12706586 complement(3184843..3186018) 1 NC_017625.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E0585 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 3186018 12706586 EcDH1_2964 Escherichia coli DH1 UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase YP_006092882.1 3184843 R 536056 CDS YP_006092883.1 386596483 12706587 3186164..3187588 1 NC_017625.1 KEGG: sdy:SDY_0597 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase enzyme MiaB 3187588 12706587 EcDH1_2965 Escherichia coli DH1 tRNA-i(6)A37 thiotransferase enzyme MiaB YP_006092883.1 3186164 D 536056 CDS YP_006092884.1 386596484 12706588 3187702..3188781 1 NC_017625.1 PFAM: PhoH family protein; KEGG: sdy:SDY_0596 putative ATP-binding protein in pho regulon; PhoH family protein 3188781 12706588 EcDH1_2966 Escherichia coli DH1 PhoH family protein YP_006092884.1 3187702 D 536056 CDS YP_006092885.1 386596485 12706589 3188778..3189245 1 NC_017625.1 PFAM: protein of unknown function UPF0054; KEGG: sbo:SBO_0523 hypothetical protein; hypothetical protein 3189245 12706589 EcDH1_2967 Escherichia coli DH1 hypothetical protein YP_006092885.1 3188778 D 536056 CDS YP_006092886.1 386596486 12706590 3189335..3190213 1 NC_017625.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: sdy:SDY_0594 putative transport protein; transporter-associated protein 3190213 12706590 EcDH1_2968 Escherichia coli DH1 transporter-associated protein YP_006092886.1 3189335 D 536056 CDS YP_006092887.1 386596487 12706591 3190238..3191776 1 NC_017625.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sfv:SFV_0670 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 3191776 12706591 EcDH1_2969 Escherichia coli DH1 apolipoprotein N-acyltransferase YP_006092887.1 3190238 D 536056 CDS YP_006092888.1 386596488 12706592 3192142..3193122 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 3193122 12706592 EcDH1_2970 Escherichia coli DH1 transposase IS4 family protein YP_006092888.1 3192142 D 536056 CDS YP_006092889.1 386596489 12706593 3193372..3194280 1 NC_017625.1 PFAM: extracellular solute-binding protein family 3; KEGG: sbo:SBO_0518 glutamate and aspartate transporter subunit; family 3 extracellular solute-binding protein 3194280 12706593 EcDH1_2971 Escherichia coli DH1 family 3 extracellular solute-binding protein YP_006092889.1 3193372 D 536056 CDS YP_006092890.1 386596490 12706594 3194450..3195190 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_0672 glutamate/aspartate transport system permease; polar amino acid ABC transporter inner membrane subunit 3195190 12706594 EcDH1_2972 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006092890.1 3194450 D 536056 CDS YP_006092891.1 386596491 12706595 3195190..3195864 1 NC_017625.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0588 glutamate/aspartate transport system permease; polar amino acid ABC transporter inner membrane subunit 3195864 12706595 EcDH1_2973 Escherichia coli DH1 polar amino acid ABC transporter inner membrane subunit YP_006092891.1 3195190 D 536056 CDS YP_006092892.1 386596492 12706596 3195864..3196589 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0606 ATP-binding protein of glutamate/aspartate transport system; ABC transporter 3196589 12706596 EcDH1_2974 Escherichia coli DH1 ABC transporter YP_006092892.1 3195864 D 536056 CDS YP_006092893.1 386596493 12706597 3196707..3197642 1 NC_017625.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sbc:SbBS512_E0598 inosine-uridine preferring nucleoside hydrolase; Purine nucleosidase 3197642 12706597 EcDH1_2975 Escherichia coli DH1 Purine nucleosidase YP_006092893.1 3196707 D 536056 CDS YP_006092894.1 386596494 12706598 3197726..3199396 1 NC_017625.1 PFAM: Heat shock protein 70; KEGG: ssn:SSON_0604 putative DnaK protein; 2-alkenal reductase 3199396 12706598 EcDH1_2976 Escherichia coli DH1 2-alkenal reductase YP_006092894.1 3197726 D 536056 CDS YP_006092895.1 386596495 12706599 complement(3199456..3200907) 1 NC_017625.1 PFAM: heat shock protein DnaJ domain protein; KEGG: ssn:SSON_0603 hypothetical protein; heat shock protein DnaJ domain-containing protein 3200907 12706599 EcDH1_2977 Escherichia coli DH1 heat shock protein DnaJ domain-containing protein YP_006092895.1 3199456 R 536056 CDS YP_006092896.1 386596496 12706600 complement(3200904..3201611) 1 NC_017625.1 PFAM: protein of unknown function DUF1266; KEGG: sfv:SFV_0678 putative tRNA ligase; hypothetical protein 3201611 12706600 EcDH1_2978 Escherichia coli DH1 hypothetical protein YP_006092896.1 3200904 R 536056 CDS YP_006092897.1 386596497 12706601 3201713..3202267 1 NC_017625.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfv:SFV_0679 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 3202267 12706601 EcDH1_2979 Escherichia coli DH1 Sel1 domain-containing protein repeat-containing protein YP_006092897.1 3201713 D 536056 CDS YP_006092898.1 386596498 12706602 complement(3202277..3203704) 1 NC_017625.1 PFAM: heat shock protein DnaJ domain protein; KEGG: sbo:SBO_0510 putative enzyme of polynucleotide modification; heat shock protein DnaJ domain-containing protein 3203704 12706602 EcDH1_2980 Escherichia coli DH1 heat shock protein DnaJ domain-containing protein YP_006092898.1 3202277 R 536056 CDS YP_006092899.1 386596499 12706603 complement(3203701..3204408) 1 NC_017625.1 PFAM: protein of unknown function DUF1266; KEGG: sbo:SBO_0509 hypothetical protein; hypothetical protein 3204408 12706603 EcDH1_2981 Escherichia coli DH1 hypothetical protein YP_006092899.1 3203701 R 536056 CDS YP_006092900.1 386596500 12706604 3204572..3205549 1 NC_017625.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: ssn:SSON_0598 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 3205549 12706604 EcDH1_2982 Escherichia coli DH1 Sel1 domain-containing protein repeat-containing protein YP_006092900.1 3204572 D 536056 CDS YP_006092901.1 386596501 12706605 complement(3205619..3206101) 1 NC_017625.1 PFAM: protein of unknown function DUF1451; KEGG: sdy:SDY_0567 hypothetical protein; hypothetical protein 3206101 12706605 EcDH1_2983 Escherichia coli DH1 hypothetical protein YP_006092901.1 3205619 R 536056 CDS YP_006092902.1 386596502 12706606 3206336..3208918 1 NC_017625.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: sdy:SDY_0564 leucyl-tRNA synthetase; leucyl-tRNA synthetase 3208918 12706606 EcDH1_2984 Escherichia coli DH1 leucyl-tRNA synthetase YP_006092902.1 3206336 D 536056 CDS YP_006092903.1 386596503 12706607 3208933..3209514 1 NC_017625.1 PFAM: Rare lipoprotein B; KEGG: sbc:SbBS512_E0610 rare lipoprotein B family protein; Rare lipoprotein B 3209514 12706607 EcDH1_2985 Escherichia coli DH1 Rare lipoprotein B YP_006092903.1 3208933 D 536056 CDS YP_006092904.1 386596504 12706608 3209514..3210545 1 NC_017625.1 KEGG: sbo:SBO_0504 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 3210545 12706608 EcDH1_2986 Escherichia coli DH1 DNA polymerase III subunit delta YP_006092904.1 3209514 D 536056 CDS YP_006092905.1 386596505 12706609 3210547..3211188 1 NC_017625.1 KEGG: ssn:SSON_0593 nicotinic acid mononucleotide adenyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3211188 12706609 EcDH1_2987 Escherichia coli DH1 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_006092905.1 3210547 D 536056 CDS YP_006092906.1 386596506 12706610 3211212..3211823 1 NC_017625.1 TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: sfv:SFV_0688 phosphohistidine protein PhpB; alpha-ribazole phosphatase 3211823 12706610 EcDH1_2988 Escherichia coli DH1 alpha-ribazole phosphatase YP_006092906.1 3211212 D 536056 CDS YP_006092907.1 386596507 12706611 3212083..3212400 1 NC_017625.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sbc:SbBS512_E0614 iojap family protein; iojap family protein 3212400 12706611 EcDH1_2989 Escherichia coli DH1 iojap family protein YP_006092907.1 3212083 D 536056 CDS YP_006092908.1 386596508 12706612 3212404..3212871 1 NC_017625.1 PFAM: protein of unknown function DUF163; KEGG: sdy:SDY_0558 hypothetical protein; hypothetical protein 3212871 12706612 EcDH1_2990 Escherichia coli DH1 hypothetical protein YP_006092908.1 3212404 D 536056 CDS YP_006092909.1 386596509 12706613 3212902..3214803 1 NC_017625.1 KEGG: sbc:SbBS512_E0616 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3214803 12706613 EcDH1_2991 Escherichia coli DH1 penicillin-binding protein 2 YP_006092909.1 3212902 D 536056 CDS YP_006092910.1 386596510 12706614 3214806..3215918 1 NC_017625.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: sbc:SbBS512_E0617 rod shape-determining protein RodA; rod shape-determining protein RodA 3215918 12706614 EcDH1_2992 Escherichia coli DH1 rod shape-determining protein RodA YP_006092910.1 3214806 D 536056 CDS YP_006092911.1 386596511 12706615 3215929..3217017 1 NC_017625.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: ssn:SSON_0587 rare lipoprotein A; rare lipoprotein A 3217017 12706615 EcDH1_2993 Escherichia coli DH1 rare lipoprotein A YP_006092911.1 3215929 D 536056 CDS YP_006092912.1 386596512 12706616 3217084..3218367 1 NC_017625.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: sfv:SFV_0694 D-alanyl-D-alanine carboxypeptidase fraction A; serine-type D-Ala-D-Ala carboxypeptidase 3218367 12706616 EcDH1_2994 Escherichia coli DH1 serine-type D-Ala-D-Ala carboxypeptidase YP_006092912.1 3217084 D 536056 CDS YP_006092913.1 386596513 12706617 3218477..3218740 1 NC_017625.1 PFAM: protein of unknown function DUF493; KEGG: sdy:SDY_0553 hypothetical protein; hypothetical protein 3218740 12706617 EcDH1_2995 Escherichia coli DH1 hypothetical protein YP_006092913.1 3218477 D 536056 CDS YP_006092914.1 386596514 12706618 3218841..3219482 1 NC_017625.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: sdy:SDY_0552 lipoyltransferase; lipoate-protein ligase B 3219482 12706618 EcDH1_2996 Escherichia coli DH1 lipoate-protein ligase B YP_006092914.1 3218841 D 536056 CDS YP_006092915.1 386596515 12706619 3219741..3220694 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfv:SFV_0697 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 3220694 12706619 EcDH1_2997 Escherichia coli DH1 LysR family transcriptional regulator YP_006092915.1 3219741 D 536056 CDS YP_006092916.1 386596516 12706620 3220903..3221868 1 NC_017625.1 KEGG: sdy:SDY_0550 lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; lipoic acid synthetase 3221868 12706620 EcDH1_2998 Escherichia coli DH1 lipoic acid synthetase YP_006092916.1 3220903 D 536056 CDS YP_006092917.1 386596517 12706621 complement(3221969..3222172) 1 NC_017625.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: sdy:SDY_0549 twin arginine translocase protein E; twin-arginine translocation protein, TatA/E family subunit 3222172 12706621 EcDH1_2999 Escherichia coli DH1 twin-arginine translocation protein, TatA/E family subunit YP_006092917.1 3221969 R 536056 CDS YP_006092918.1 386596518 12706623 3223181..3223564 1 NC_017625.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sbc:SbBS512_E0539 CrcB protein; CrcB protein 3223564 12706623 EcDH1_3001 Escherichia coli DH1 CrcB protein YP_006092918.1 3223181 D 536056 CDS YP_006092919.1 386596519 12706624 complement(3223618..3223827) 1 NC_017625.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sdy:SDY_0546 cold shock protein E; cold-shock protein 3223827 12706624 EcDH1_3002 Escherichia coli DH1 cold-shock protein YP_006092919.1 3223618 R 536056 CDS YP_006092920.1 386596520 12706625 complement(3224002..3224562) 1 NC_017625.1 PFAM: Antimicrobial peptide resistance and lipid A acylation PagP; KEGG: sfv:SFV_0703 palmitoyl transferase for lipid A; antimicrobial peptide resistance and lipid A acylation PagP 3224562 12706625 EcDH1_3003 Escherichia coli DH1 antimicrobial peptide resistance and lipid A acylation PagP YP_006092920.1 3224002 R 536056 CDS YP_006092921.1 386596521 12706626 3225151..3226536 1 NC_017625.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sbo:SBO_0486 C4-dicarboxylate transporter DcuC; anaerobic c4-dicarboxylate antiporter 3226536 12706626 EcDH1_3004 Escherichia coli DH1 anaerobic c4-dicarboxylate antiporter YP_006092921.1 3225151 D 536056 CDS YP_006092922.1 386596522 12706627 complement(3226577..3227257) 1 NC_017625.1 PFAM: response regulator receiver; KEGG: sbc:SbBS512_E0535 transcriptional regulatory protein DpiA; fused response regulator receiver/hypothetical protein 3227257 12706627 EcDH1_3005 Escherichia coli DH1 fused response regulator receiver/hypothetical protein YP_006092922.1 3226577 R 536056 CDS YP_006092923.1 386596523 12706628 complement(3227226..3228884) 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; SMART: PAS domain containing protein; KEGG: ssn:SSON_0572 putative sensor-type protein; signal transduction histidine kinase regulating citrate/malate metabolism 3228884 12706628 EcDH1_3006 Escherichia coli DH1 signal transduction histidine kinase regulating citrate/malate metabolism YP_006092923.1 3227226 R 536056 CDS YP_006092924.1 386596524 12706629 3229263..3230321 1 NC_017625.1 KEGG: sbo:SBO_0483 citrate lyase synthetase; TIGRFAM: cytidyltransferase-related domain protein; citrate lyase ligase; PFAM: GCN5-related N-acetyltransferase; Citrate lyase ligase domain protein; citrate lyase ligase 3230321 12706629 EcDH1_3007 Escherichia coli DH1 citrate lyase ligase YP_006092924.1 3229263 D 536056 CDS YP_006092925.1 386596525 12706630 3230336..3230632 1 NC_017625.1 TIGRFAM: citrate lyase acyl carrier protein; PFAM: Citrate lyase acyl carrier protein CitD; KEGG: ssn:SSON_0569 citrate lyase subunit gamma; citrate lyase acyl carrier protein 3230632 12706630 EcDH1_3008 Escherichia coli DH1 citrate lyase acyl carrier protein YP_006092925.1 3230336 D 536056 CDS YP_006092926.1 386596526 12706631 3230629..3231537 1 NC_017625.1 KEGG: sbc:SbBS512_E0530 citrate (pro-3S)-lyase, beta subunit; TIGRFAM: citrate lyase, beta subunit; PFAM: HpcH/HpaI aldolase; citrate lyase subunit beta 3231537 12706631 EcDH1_3009 Escherichia coli DH1 citrate lyase subunit beta YP_006092926.1 3230629 D 536056 CDS YP_006092927.1 386596527 12706632 3231548..3233080 1 NC_017625.1 KEGG: ssn:SSON_0567 citrate lyase alpha chain; TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase alpha subunit; citrate lyase subunit alpha 3233080 12706632 EcDH1_3010 Escherichia coli DH1 citrate lyase subunit alpha YP_006092927.1 3231548 D 536056 CDS YP_006092928.1 386596528 12706633 3233084..3233635 1 NC_017625.1 KEGG: sbc:SbBS512_E0528 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; TIGRFAM: holo-ACP synthase CitX; PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; holo-ACP synthase CitX 3233635 12706633 EcDH1_3011 Escherichia coli DH1 holo-ACP synthase CitX YP_006092928.1 3233084 D 536056 CDS YP_006092929.1 386596529 12706634 3233610..3234488 1 NC_017625.1 KEGG: ssn:SSON_0565 triphosphoribosyl-dephospho-CoA synthase; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase CitG; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase CitG 3234488 12706634 EcDH1_3012 Escherichia coli DH1 triphosphoribosyl-dephospho-CoA synthase CitG YP_006092929.1 3233610 D 536056 CDS YP_006092930.1 386596530 12706635 3234539..3236002 1 NC_017625.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: sbo:SBO_0477 putative a membrane protein; anion transporter 3236002 12706635 EcDH1_3013 Escherichia coli DH1 anion transporter YP_006092930.1 3234539 D 536056 CDS YP_006092931.1 386596531 12706636 3236116..3236922 1 NC_017625.1 PFAM: ribonuclease T2; KEGG: sbc:SbBS512_E0525 ribonuclease I; ribonuclease 3236922 12706636 EcDH1_3014 Escherichia coli DH1 ribonuclease YP_006092931.1 3236116 D 536056 CDS YP_006092932.1 386596532 12706637 3237152..3237562 1 NC_017625.1 KEGG: sbc:SbBS512_E0524 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 3237562 12706637 EcDH1_3015 Escherichia coli DH1 GreA/GreB family elongation factor YP_006092932.1 3237152 D 536056 CDS YP_006092933.1 386596533 12706638 complement(3237793..3239031) 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbo:SBO_0473 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein 3239031 12706638 EcDH1_3016 Escherichia coli DH1 alcohol dehydrogenase GroES domain-containing protein YP_006092933.1 3237793 R 536056 CDS YP_006092934.1 386596534 12706639 3239252..3239680 1 NC_017625.1 PFAM: UspA domain protein; KEGG: sdy:SDY_0542 hypothetical protein; UspA domain-containing protein 3239680 12706639 EcDH1_3017 Escherichia coli DH1 UspA domain-containing protein YP_006092934.1 3239252 D 536056 CDS YP_006092935.1 386596535 12706640 complement(3239801..3241396) 1 NC_017625.1 TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E0520 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase 3241396 12706640 EcDH1_3018 Escherichia coli DH1 alkyl hydroperoxide reductase YP_006092935.1 3239801 R 536056 CDS YP_006092936.1 386596536 12706641 complement(3241611..3242174) 1 NC_017625.1 KEGG: sbc:SbBS512_E0519 alkyl hydroperoxide reductase subunit C; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxiredoxin 3242174 12706641 EcDH1_3019 Escherichia coli DH1 peroxiredoxin YP_006092936.1 3241611 R 536056 CDS YP_006092937.1 386596537 12706642 3242546..3243292 1 NC_017625.1 KEGG: sfv:SFV_0558 disulfide isomerase/thiol-disulfide oxidase; disulfide isomerase/thiol-disulfide oxidase 3243292 12706642 EcDH1_3020 Escherichia coli DH1 disulfide isomerase/thiol-disulfide oxidase YP_006092937.1 3242546 D 536056 CDS YP_006092938.1 386596538 12706643 3243501..3244403 1 NC_017625.1 PFAM: regulatory protein LysR; KEGG: sfv:SFV_0557 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 3244403 12706643 EcDH1_3021 Escherichia coli DH1 LysR family transcriptional regulator YP_006092938.1 3243501 D 536056 CDS YP_006092939.1 386596539 12706644 3244550..3245770 1 NC_017625.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: cko:CKO_02557 hypothetical protein; phosphoadenosine phosphosulfate reductase 3245770 12706644 EcDH1_3022 Escherichia coli DH1 phosphoadenosine phosphosulfate reductase YP_006092939.1 3244550 D 536056 CDS YP_006092940.1 386596540 12706645 3245755..3246372 1 NC_017625.1 PFAM: ParB domain protein nuclease; KEGG: ssn:SSON_0553 hypothetical protein; ParB domain-containing protein nuclease 3246372 12706645 EcDH1_3023 Escherichia coli DH1 ParB domain-containing protein nuclease YP_006092940.1 3245755 D 536056 CDS YP_006092941.1 386596541 12706646 complement(3246373..3247533) 1 NC_017625.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; KEGG: sfv:SFV_0549 putative aminotransferase; class I and II aminotransferase 3247533 12706646 EcDH1_3024 Escherichia coli DH1 class I and II aminotransferase YP_006092941.1 3246373 R 536056 CDS YP_006092942.1 386596542 12706647 3247642..3248730 1 NC_017625.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: sfx:S0519 hypothetical protein; iron-containing alcohol dehydrogenase 3248730 12706647 EcDH1_3025 Escherichia coli DH1 iron-containing alcohol dehydrogenase YP_006092942.1 3247642 D 536056 CDS YP_006092943.1 386596543 12706648 complement(3248740..3248937) 1 NC_017625.1 PFAM: protein of unknown function DUF466; KEGG: sdy:SDY_0530 hypothetical protein; hypothetical protein 3248937 12706648 EcDH1_3026 Escherichia coli DH1 hypothetical protein YP_006092943.1 3248740 R 536056 CDS YP_006092944.1 386596544 12706649 complement(3248949..3249101) 1 NC_017625.1 hypothetical protein 3249101 12706649 EcDH1_3027 Escherichia coli DH1 hypothetical protein YP_006092944.1 3248949 R 536056 CDS YP_006092945.1 386596545 12706650 complement(3249120..3251225) 1 NC_017625.1 PFAM: carbon starvation protein CstA; KEGG: sbo:SBO_0459 carbon starvation protein; carbon starvation protein CstA 3251225 12706650 EcDH1_3028 Escherichia coli DH1 carbon starvation protein CstA YP_006092945.1 3249120 R 536056 CDS YP_006092946.1 386596546 12706651 complement(3251406..3251819) 1 NC_017625.1 PFAM: thioesterase superfamily protein; KEGG: sdy:SDY_0528 hypothetical protein; thioesterase superfamily protein 3251819 12706651 EcDH1_3029 Escherichia coli DH1 thioesterase superfamily protein YP_006092946.1 3251406 R 536056 CDS YP_006092947.1 386596547 12706652 complement(3251822..3252568) 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sdy:SDY_0527 2,3-dihydroxybenzoate-2,3-dehydrogenase; short-chain dehydrogenase/reductase SDR 3252568 12706652 EcDH1_3030 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006092947.1 3251822 R 536056 CDS YP_006092948.1 386596548 12706653 complement(3252568..3253425) 1 NC_017625.1 PFAM: isochorismatase hydrolase; phosphopantetheine-binding; KEGG: sfl:SF0509 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase; isochorismatase 3253425 12706653 EcDH1_3031 Escherichia coli DH1 isochorismatase YP_006092948.1 3252568 R 536056 CDS YP_006092949.1 386596549 12706654 complement(3253439..3255049) 1 NC_017625.1 TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sdy:SDY_0525 enterobactin synthase subunit E; 2,3-dihydroxybenzoate-AMP ligase 3255049 12706654 EcDH1_3032 Escherichia coli DH1 2,3-dihydroxybenzoate-AMP ligase YP_006092949.1 3253439 R 536056 CDS YP_006092950.1 386596550 12706655 complement(3255059..3256234) 1 NC_017625.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: sdy:SDY_0524 isochorismate hydroxymutase 2; isochorismate synthase 3256234 12706655 EcDH1_3033 Escherichia coli DH1 isochorismate synthase YP_006092950.1 3255059 R 536056 CDS YP_006092951.1 386596551 12706656 3256609..3257565 1 NC_017625.1 PFAM: periplasmic binding protein; KEGG: sbc:SbBS512_E0494 ferrienterobactin ABC transporter, ferrienterobactin-binding periplasmic protein FepB; periplasmic binding protein 3257565 12706656 EcDH1_3034 Escherichia coli DH1 periplasmic binding protein YP_006092951.1 3256609 D 536056 CDS YP_006092952.1 386596552 12706657 complement(3257569..3258819) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_0542 enterobactin exporter EntS; major facilitator superfamily protein 3258819 12706657 EcDH1_3035 Escherichia coli DH1 major facilitator superfamily protein YP_006092952.1 3257569 R 536056 CDS YP_006092953.1 386596553 12706658 3258930..3259934 1 NC_017625.1 PFAM: transport system permease protein; KEGG: sbc:SbBS512_E0492 ferric enterobactin transport system permease protein FepD; transport system permease 3259934 12706658 EcDH1_3036 Escherichia coli DH1 transport system permease YP_006092953.1 3258930 D 536056 CDS YP_006092954.1 386596554 12706659 3259931..3260923 1 NC_017625.1 PFAM: transport system permease protein; KEGG: grail3.13196000101; . ; K02015 iron complex transport system permease protein; transport system permease 3260923 12706659 EcDH1_3037 Escherichia coli DH1 transport system permease YP_006092954.1 3259931 D 536056 CDS YP_006092955.1 386596555 12706660 3260920..3261735 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0519 iron-enterobactin transporter ATP-binding protein; ABC transporter 3261735 12706660 EcDH1_3038 Escherichia coli DH1 ABC transporter YP_006092955.1 3260920 D 536056 CDS YP_006092956.1 386596556 12706661 complement(3261732..3262865) 1 NC_017625.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: sdy:SDY_0518 ferric enterobactin transport; lipopolysaccharide biosynthesis protein 3262865 12706661 EcDH1_3039 Escherichia coli DH1 lipopolysaccharide biosynthesis protein YP_006092956.1 3261732 R 536056 CDS YP_006092957.1 386596557 12706662 complement(3263081..3266962) 1 NC_017625.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: ssn:SSON_0537 enterobactin synthase subunit F; amino acid adenylation protein 3266962 12706662 EcDH1_3040 Escherichia coli DH1 amino acid adenylation protein YP_006092957.1 3263081 R 536056 CDS YP_006092958.1 386596558 12706663 complement(3266959..3267177) 1 NC_017625.1 PFAM: MbtH domain protein; KEGG: sbc:SbBS512_E0487 MbtH-like protein; MbtH domain-containing protein 3267177 12706663 EcDH1_3041 Escherichia coli DH1 MbtH domain-containing protein YP_006092958.1 3266959 R 536056 CDS YP_006092959.1 386596559 12706664 complement(3267180..3268382) 1 NC_017625.1 PFAM: putative esterase; KEGG: sbc:SbBS512_E0486 enterochelin esterase; putative esterase 3268382 12706664 EcDH1_3042 Escherichia coli DH1 putative esterase YP_006092959.1 3267180 R 536056 CDS YP_006092960.1 386596560 12706665 3268625..3270865 1 NC_017625.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfx:S0502 outer membrane receptor FepA; TonB-dependent siderophore receptor 3270865 12706665 EcDH1_3043 Escherichia coli DH1 TonB-dependent siderophore receptor YP_006092960.1 3268625 D 536056 CDS YP_006092961.1 386596561 12706666 3270917..3271660 1 NC_017625.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sfv:SFV_0528 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; 4'-phosphopantetheinyl transferase 3271660 12706666 EcDH1_3044 Escherichia coli DH1 4'-phosphopantetheinyl transferase YP_006092961.1 3270917 D 536056 CDS YP_006092962.1 386596562 12706667 complement(3271779..3271919) 1 NC_017625.1 hypothetical protein 3271919 12706667 EcDH1_3045 Escherichia coli DH1 hypothetical protein YP_006092962.1 3271779 R 536056 CDS YP_006092963.1 386596563 12706668 complement(3271942..3273054) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_P186 IS186 ORF1; transposase IS4 family protein 3273054 12706668 EcDH1_3046 Escherichia coli DH1 transposase IS4 family protein YP_006092963.1 3271942 R 536056 CDS YP_006092964.1 386596564 12706669 complement(3273131..3273382) 1 NC_017625.1 PFAM: Hok/gef cell toxic protein; KEGG: sfx:S0500 hypothetical protein; Hok/gef cell toxic protein 3273382 12706669 EcDH1_3047 Escherichia coli DH1 Hok/gef cell toxic protein YP_006092964.1 3273131 R 536056 CDS YP_006092965.1 386596565 12706670 3273736..3274854 1 NC_017625.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: ssn:SSON_0532 hypothetical protein; glutamate--cysteine ligase 3274854 12706670 EcDH1_3048 Escherichia coli DH1 glutamate--cysteine ligase YP_006092965.1 3273736 D 536056 CDS YP_006092966.1 386596566 12706671 3274968..3275168 1 NC_017625.1 KEGG: sbc:SbBS512_E0474 putative lipoprotein; putative lipoprotein 3275168 12706671 EcDH1_3049 Escherichia coli DH1 putative lipoprotein YP_006092966.1 3274968 D 536056 CDS YP_006092967.1 386596567 12706672 3275233..3275601 1 NC_017625.1 PFAM: protein of unknown function DUF419; KEGG: sdy:SDY_0492 hypothetical protein; hypothetical protein 3275601 12706672 EcDH1_3050 Escherichia coli DH1 hypothetical protein YP_006092967.1 3275233 D 536056 CDS YP_006092968.1 386596568 12706673 3275695..3276348 1 NC_017625.1 PFAM: nitroreductase; KEGG: sbo:SBO_0439 dihydropteridine reductase; 6,7-dihydropteridine reductase 3276348 12706673 EcDH1_3051 Escherichia coli DH1 6,7-dihydropteridine reductase YP_006092968.1 3275695 D 536056 CDS YP_006092969.1 386596569 12706674 3276456..3277703 1 NC_017625.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ssn:SSON_0528 putative transport; mechanosensitive ion channel protein MscS 3277703 12706674 EcDH1_3052 Escherichia coli DH1 mechanosensitive ion channel protein MscS YP_006092969.1 3276456 D 536056 CDS YP_006092970.1 386596570 12706675 complement(3277784..3279196) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sfv:SFV_0516 phenylalanine transporter; amino acid permease 3279196 12706675 EcDH1_3053 Escherichia coli DH1 amino acid permease YP_006092970.1 3277784 R 536056 CDS YP_006092971.1 386596571 12706676 complement(3279262..3282405) 1 NC_017625.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ssn:SSON_0526 putative inner membrane component for iron transport; CzcA family heavy metal efflux pump 3282405 12706676 EcDH1_3054 Escherichia coli DH1 CzcA family heavy metal efflux pump YP_006092971.1 3279262 R 536056 CDS YP_006092972.1 386596572 12706677 complement(3282417..3283640) 1 NC_017625.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ssn:SSON_0525 copper/silver efflux system membrane fusion protein CusB; RND family efflux transporter MFP subunit 3283640 12706677 EcDH1_3055 Escherichia coli DH1 RND family efflux transporter MFP subunit YP_006092972.1 3282417 R 536056 CDS YP_006092973.1 386596573 12706678 complement(3283656..3283988) 1 NC_017625.1 KEGG: sfv:SFV_0506 periplasmic copper-binding protein; copper-binding protein 3283988 12706678 EcDH1_3056 Escherichia coli DH1 copper-binding protein YP_006092973.1 3283656 R 536056 CDS YP_006092974.1 386596574 12706679 complement(3284146..3285519) 1 NC_017625.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ssn:SSON_0523 copper/silver efflux system outer membrane protein CusC; NodT family RND efflux system outer membrane lipoprotein 3285519 12706679 EcDH1_3057 Escherichia coli DH1 NodT family RND efflux system outer membrane lipoprotein YP_006092974.1 3284146 R 536056 CDS YP_006092975.1 386596575 12706680 3285676..3286359 1 NC_017625.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_0522 DNA-binding response regulator in two-component regulatory system with CusS; two component heavy metal response transcriptional regulator, winged helix family 3286359 12706680 EcDH1_3058 Escherichia coli DH1 two component heavy metal response transcriptional regulator, winged helix family YP_006092975.1 3285676 D 536056 CDS YP_006092976.1 386596576 12706681 3286349..3287791 1 NC_017625.1 KEGG: ssn:SSON_0521 sensor kinase CusS; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 3287791 12706681 EcDH1_3059 Escherichia coli DH1 heavy metal sensor signal transduction histidine kinase YP_006092976.1 3286349 D 536056 CDS YP_006092977.1 386596577 12706682 3287941..3290178 1 NC_017625.1 PFAM: General secretory system II protein E domain protein; KEGG: sfl:SF0470 bacteriophage N4 adsorption protein B; General secretory system II protein E domain-containing protein 3290178 12706682 EcDH1_3060 Escherichia coli DH1 General secretory system II protein E domain-containing protein YP_006092977.1 3287941 D 536056 CDS YP_006092978.1 386596578 12706683 3290165..3293137 1 NC_017625.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ssn:SSON_0514 bacteriophage N4 receptor, outer membrane subunit; hypothetical protein 3293137 12706683 EcDH1_3061 Escherichia coli DH1 hypothetical protein YP_006092978.1 3290165 D 536056 CDS YP_006092979.1 386596579 12706684 3293138..3294028 1 NC_017625.1 KEGG: ssn:SSON_0513 hypothetical protein; hypothetical protein 3294028 12706684 EcDH1_3062 Escherichia coli DH1 hypothetical protein YP_006092979.1 3293138 D 536056 CDS YP_006092980.1 386596580 12706685 3294211..3294972 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ssn:SSON_0512 envelope protein; AraC family transcriptional regulator 3294972 12706685 EcDH1_3063 Escherichia coli DH1 AraC family transcriptional regulator YP_006092980.1 3294211 D 536056 CDS YP_006092981.1 386596581 12706686 3295486..3296439 1 NC_017625.1 PFAM: peptidase A26 omptin; KEGG: ses:SARI_01746 outer membrane protease; Plasminogen activator Pla 3296439 12706686 EcDH1_3064 Escherichia coli DH1 Plasminogen activator Pla YP_006092981.1 3295486 D 536056 CDS YP_006092982.1 386596582 12706687 complement(3296689..3297438) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbo:SBO_3514 putative AraC-type regulatory protein; AraC family transcriptional regulator 3297438 12706687 EcDH1_3065 Escherichia coli DH1 AraC family transcriptional regulator YP_006092982.1 3296689 R 536056 CDS YP_006092983.1 386596583 12706689 3298383..3298967 1 NC_017625.1 PFAM: Methyltransferase type 12; KEGG: sfv:SFV_2186 unknown protein encoded within prophage; type 12 methyltransferase 3298967 12706689 EcDH1_3067 Escherichia coli DH1 type 12 methyltransferase YP_006092983.1 3298383 D 536056 CDS YP_006092984.1 386596584 12706690 complement(3299022..3299765) 1 NC_017625.1 PFAM: tail assembly chaperone gp38; KEGG: sbc:SbBS512_E1479 tail fiber assembly protein; tail assembly chaperone gp38 3299765 12706690 EcDH1_3068 Escherichia coli DH1 tail assembly chaperone gp38 YP_006092984.1 3299022 R 536056 CDS YP_006092985.1 386596585 12706691 complement(3299740..3300285) 1 NC_017625.1 PFAM: DNA packaging Nu1; KEGG: ssn:SSON_2431 bacteriophage DNA packaging protein; DNA packaging Nu1 3300285 12706691 EcDH1_3069 Escherichia coli DH1 DNA packaging Nu1 YP_006092985.1 3299740 R 536056 CDS YP_006092986.1 386596586 12706692 complement(3301033..3301239) 1 NC_017625.1 hypothetical protein 3301239 12706692 EcDH1_3070 Escherichia coli DH1 hypothetical protein YP_006092986.1 3301033 R 536056 CDS YP_006092987.1 386596587 12706693 3301525..3301935 1 NC_017625.1 PFAM: protein of unknown function DUF1398; KEGG: ssn:SSON_2432 hypothetical protein; hypothetical protein 3301935 12706693 EcDH1_3071 Escherichia coli DH1 hypothetical protein YP_006092987.1 3301525 D 536056 CDS YP_006092988.1 386596588 12706694 3302226..3302519 1 NC_017625.1 PFAM: Bor family protein; KEGG: eca:ECA2067 lipoprotein; Bor family protein 3302519 12706694 EcDH1_3072 Escherichia coli DH1 Bor family protein YP_006092988.1 3302226 D 536056 CDS YP_006092989.1 386596589 12706695 complement(3302551..3303012) 1 NC_017625.1 PFAM: lysis protein; KEGG: ssn:SSON_2782 endopeptidase-like protein; Phosphoprotein phosphatase 3303012 12706695 EcDH1_3073 Escherichia coli DH1 Phosphoprotein phosphatase YP_006092989.1 3302551 R 536056 CDS YP_006092990.1 386596590 12706696 complement(3303009..3303506) 1 NC_017625.1 PFAM: glycoside hydrolase family 24; KEGG: ssn:SSON_2783 lysozyme-like protein; lysozyme 3303506 12706696 EcDH1_3074 Escherichia coli DH1 lysozyme YP_006092990.1 3303009 R 536056 CDS YP_006092991.1 386596591 12706697 complement(3303506..3303721) 1 NC_017625.1 PFAM: Lysis S family protein; KEGG: ssn:SSON_2438 hypothetical protein; Lysis S family protein 3303721 12706697 EcDH1_3075 Escherichia coli DH1 Lysis S family protein YP_006092991.1 3303506 R 536056 CDS YP_006092992.1 386596592 12706698 3304000..3304980 1 NC_017625.1 PFAM: transposase IS4 family protein; transposase IS4 family protein 3304980 12706698 EcDH1_3076 Escherichia coli DH1 transposase IS4 family protein YP_006092992.1 3304000 D 536056 CDS YP_006092993.1 386596593 12706701 3306475..3307107 1 NC_017625.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sfv:SFV_0497 transcriptional regulator FimZ; LuxR family two component transcriptional regulator 3307107 12706701 EcDH1_3078 Escherichia coli DH1 LuxR family two component transcriptional regulator YP_006092993.1 3306475 D 536056 CDS YP_006092994.1 386596594 12706702 complement(3307110..3307625) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: ssn:SSON_0507 predicted fimbrial-like adhesin protein; Fimbrial protein 3307625 12706702 EcDH1_3079 Escherichia coli DH1 Fimbrial protein YP_006092994.1 3307110 R 536056 CDS YP_006092995.1 386596595 12706703 complement(3307636..3308613) 1 NC_017625.1 KEGG: ssn:SSON_0506 involved in fimbrial asembly; involved in fimbrial asembly 3308613 12706703 EcDH1_3080 Escherichia coli DH1 involved in fimbrial asembly YP_006092995.1 3307636 R 536056 CDS YP_006092996.1 386596596 12706704 complement(3308655..3311258) 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: cko:CKO_02625 hypothetical protein; fimbrial biogenesis outer membrane usher protein 3311258 12706704 EcDH1_3081 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006092996.1 3308655 R 536056 CDS YP_006092997.1 386596597 12706705 complement(3311289..3311981) 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sfx:S0470 putative chaperone; Pili assembly chaperone, N-terminal 3311981 12706705 EcDH1_3082 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006092997.1 3311289 R 536056 CDS YP_006092998.1 386596598 12706706 complement(3312201..3312743) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sfx:S0469 putative fimbrial-like protein; Fimbrial protein 3312743 12706706 EcDH1_3083 Escherichia coli DH1 Fimbrial protein YP_006092998.1 3312201 R 536056 CDS YP_006092999.1 386596599 12706707 3313214..3314080 1 NC_017625.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: sdy:SDY_0281 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; Methenyltetrahydrofolate cyclohydrolase 3314080 12706707 EcDH1_3084 Escherichia coli DH1 Methenyltetrahydrofolate cyclohydrolase YP_006092999.1 3313214 D 536056 CDS YP_006093000.1 386596600 12706708 3314082..3314294 1 NC_017625.1 KEGG: sdy:SDY_0280 hypothetical protein; hypothetical protein 3314294 12706708 EcDH1_3085 Escherichia coli DH1 hypothetical protein YP_006093000.1 3314082 D 536056 CDS YP_006093001.1 386596601 12706709 3314402..3314923 1 NC_017625.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: sbc:SbBS512_E0447 hypothetical protein; membrane-bound metal-dependent hydrolase 3314923 12706709 EcDH1_3086 Escherichia coli DH1 membrane-bound metal-dependent hydrolase YP_006093001.1 3314402 D 536056 CDS YP_006093002.1 386596602 12706710 complement(3314959..3316344) 1 NC_017625.1 KEGG: sfv:SFV_0484 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; cysteinyl-tRNA synthetase 3316344 12706710 EcDH1_3087 Escherichia coli DH1 cysteinyl-tRNA synthetase YP_006093002.1 3314959 R 536056 CDS YP_006093003.1 386596603 12706711 3316518..3317012 1 NC_017625.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sfv:SFV_0483 peptidyl-prolyl cis-trans isomerase B (rotamase B); cyclophilin type peptidyl-prolyl cis-trans isomerase 3317012 12706711 EcDH1_3088 Escherichia coli DH1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_006093003.1 3316518 D 536056 CDS YP_006093004.1 386596604 12706712 3317015..3317737 1 NC_017625.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: sbc:SbBS512_E0450 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase 3317737 12706712 EcDH1_3089 Escherichia coli DH1 UDP-2,3-diacylglucosamine hydrolase YP_006093004.1 3317015 D 536056 CDS YP_006093005.1 386596605 12706713 3317855..3318364 1 NC_017625.1 KEGG: sbo:SBO_0420 phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 3318364 12706713 EcDH1_3090 Escherichia coli DH1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_006093005.1 3317855 D 536056 CDS YP_006093006.1 386596606 12706714 3318361..3319428 1 NC_017625.1 KEGG: sfv:SFV_0480 phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit 3319428 12706714 EcDH1_3091 Escherichia coli DH1 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_006093006.1 3318361 D 536056 CDS YP_006093007.1 386596607 12706715 complement(3319623..3320516) 1 NC_017625.1 KEGG: ssn:SSON_0497 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase 3320516 12706715 EcDH1_3092 Escherichia coli DH1 carbamate kinase YP_006093007.1 3319623 R 536056 CDS YP_006093008.1 386596608 12706716 complement(3320513..3321328) 1 NC_017625.1 KEGG: sbo:SBO_0423 putative carboxylase; putative carboxylase 3321328 12706716 EcDH1_3093 Escherichia coli DH1 putative carboxylase YP_006093008.1 3320513 R 536056 CDS YP_006093009.1 386596609 12706717 complement(3321339..3322598) 1 NC_017625.1 PFAM: protein of unknown function DUF1116; KEGG: sbc:SbBS512_E0455 hypothetical protein; hypothetical protein 3322598 12706717 EcDH1_3094 Escherichia coli DH1 hypothetical protein YP_006093009.1 3321339 R 536056 CDS YP_006093010.1 386596610 12706718 complement(3322608..3324275) 1 NC_017625.1 PFAM: FdrA family protein; KEGG: sdy:SDY_0268 membrane protein FdrA; FdrA family protein 3324275 12706718 EcDH1_3095 Escherichia coli DH1 FdrA family protein YP_006093010.1 3322608 R 536056 CDS YP_006093011.1 386596611 12706719 3324592..3325641 1 NC_017625.1 TIGRFAM: ureidoglycolate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; KEGG: pmr:PMI0702 ureidoglycolate dehydrogenase; ureidoglycolate dehydrogenase 3325641 12706719 EcDH1_3096 Escherichia coli DH1 ureidoglycolate dehydrogenase YP_006093011.1 3324592 D 536056 CDS YP_006093012.1 386596612 12706720 3325663..3326898 1 NC_017625.1 KEGG: sfv:SFV_0477 allantoate amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; allantoate amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; allantoate amidohydrolase 3326898 12706720 EcDH1_3097 Escherichia coli DH1 allantoate amidohydrolase YP_006093012.1 3325663 D 536056 CDS YP_006093013.1 386596613 12706721 3326909..3327694 1 NC_017625.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: sfv:SFV_0476 hypothetical protein; allantoin catabolism protein 3327694 12706721 EcDH1_3098 Escherichia coli DH1 allantoin catabolism protein YP_006093013.1 3326909 D 536056 CDS YP_006093014.1 386596614 12706722 complement(3327922..3329067) 1 NC_017625.1 PFAM: glycerate kinase; KEGG: kpe:KPK_0993 putative glycerate kinase; glycerate kinase 3329067 12706722 EcDH1_3099 Escherichia coli DH1 glycerate kinase YP_006093014.1 3327922 R 536056 CDS YP_006093015.1 386596615 12706723 complement(3329089..3330390) 1 NC_017625.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: pth:PTH_0868 xanthine/uracil permeases; xanthine/uracil/vitamin C permease 3330390 12706723 EcDH1_3100 Escherichia coli DH1 xanthine/uracil/vitamin C permease YP_006093015.1 3329089 R 536056 CDS YP_006093016.1 386596616 12706724 complement(3330447..3331808) 1 NC_017625.1 TIGRFAM: allantoinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bld:BLi01126 allantoinase; allantoinase 3331808 12706724 EcDH1_3101 Escherichia coli DH1 allantoinase YP_006093016.1 3330447 R 536056 CDS YP_006093017.1 386596617 12706725 complement(3331868..3333322) 1 NC_017625.1 TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: sea:SeAg_B0568 NCS1 nucleoside transporter family protein; NCS1 nucleoside transporter family 3333322 12706725 EcDH1_3102 Escherichia coli DH1 NCS1 nucleoside transporter family YP_006093017.1 3331868 R 536056 CDS YP_006093018.1 386596618 12706726 complement(3333491..3334369) 1 NC_017625.1 KEGG: set:SEN0500 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 3334369 12706726 EcDH1_3103 Escherichia coli DH1 2-hydroxy-3-oxopropionate reductase YP_006093018.1 3333491 R 536056 CDS YP_006093019.1 386596619 12706727 complement(3334469..3335245) 1 NC_017625.1 KEGG: ssn:SSON_0503 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 3335245 12706727 EcDH1_3104 Escherichia coli DH1 hydroxypyruvate isomerase YP_006093019.1 3334469 R 536056 CDS YP_006093020.1 386596620 12706728 complement(3335258..3337039) 1 NC_017625.1 TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sbc:SbBS512_E0441 glyoxylate carboligase; glyoxylate carboligase 3337039 12706728 EcDH1_3105 Escherichia coli DH1 glyoxylate carboligase YP_006093020.1 3335258 R 536056 CDS YP_006093021.1 386596621 12706729 complement(3337129..3337944) 1 NC_017625.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sbo:SBO_0410 DNA-binding transcriptional repressor; IclR family transcriptional regulator 3337944 12706729 EcDH1_3106 Escherichia coli DH1 IclR family transcriptional regulator YP_006093021.1 3337129 R 536056 CDS YP_006093022.1 386596622 12706730 complement(3338022..3338504) 1 NC_017625.1 PFAM: Ureidoglycolate hydrolase; KEGG: sdy:SDY_0397 ureidoglycolate hydrolase; ureidoglycolate hydrolase 3338504 12706730 EcDH1_3107 Escherichia coli DH1 ureidoglycolate hydrolase YP_006093022.1 3338022 R 536056 CDS YP_006093023.1 386596623 12706731 3338734..3339660 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_0398 DNA-binding transcriptional activator of the AllD operon; LysR family transcriptional regulator 3339660 12706731 EcDH1_3108 Escherichia coli DH1 LysR family transcriptional regulator YP_006093023.1 3338734 D 536056 CDS YP_006093024.1 386596624 12706732 3339729..3340823 1 NC_017625.1 TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; KEGG: sdy:SDY_0399 tRNA 2-selenouridine synthase; tRNA 2-selenouridine synthase 3340823 12706732 EcDH1_3109 Escherichia coli DH1 tRNA 2-selenouridine synthase YP_006093024.1 3339729 D 536056 CDS YP_006093025.1 386596625 12706733 3340939..3341310 1 NC_017625.1 KEGG: sdy:SDY_0400 hypothetical protein; hypothetical protein 3341310 12706733 EcDH1_3110 Escherichia coli DH1 hypothetical protein YP_006093025.1 3340939 D 536056 CDS YP_006093026.1 386596626 12706734 complement(3342296..3343006) 1 NC_017625.1 PFAM: RHS protein; KEGG: sbo:SBO_0401 putative protein in rhs element; RHS protein 3343006 12706734 EcDH1_3111 Escherichia coli DH1 RHS protein YP_006093026.1 3342296 R 536056 CDS YP_006093027.1 386596627 12706735 complement(3343006..3343374) 1 NC_017625.1 KEGG: fjo:Fjoh_2679 hypothetical protein; hypothetical protein 3343374 12706735 EcDH1_3112 Escherichia coli DH1 hypothetical protein YP_006093027.1 3343006 R 536056 CDS YP_006093028.1 386596628 12706736 complement(3343414..3347694) 1 NC_017625.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: aav:Aave_3712 YD repeat protein; YD repeat protein 3347694 12706736 EcDH1_3113 Escherichia coli DH1 YD repeat protein YP_006093028.1 3343414 R 536056 CDS YP_006093029.1 386596629 12706737 complement(3348125..3350539) 1 NC_017625.1 PFAM: protein of unknown function DUF214; KEGG: ssn:SSON_0485 putative oxidoreductase; hypothetical protein 3350539 12706737 EcDH1_3114 Escherichia coli DH1 hypothetical protein YP_006093029.1 3348125 R 536056 CDS YP_006093030.1 386596630 12706738 complement(3350536..3351222) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E0430 ABC transporter, ATP-binding protein; ABC transporter 3351222 12706738 EcDH1_3115 Escherichia coli DH1 ABC transporter YP_006093030.1 3350536 R 536056 CDS YP_006093031.1 386596631 12706739 3351223..3351816 1 NC_017625.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sbc:SbBS512_E0429 acyl-CoA thioesterase I; lysophospholipase 3351816 12706739 EcDH1_3116 Escherichia coli DH1 lysophospholipase YP_006093031.1 3351223 D 536056 CDS YP_006093032.1 386596632 12706740 3351845..3352615 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ssn:SSON_0482 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3352615 12706740 EcDH1_3117 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006093032.1 3351845 D 536056 CDS YP_006093033.1 386596633 12706741 3352676..3353530 1 NC_017625.1 PFAM: Thioredoxin domain; KEGG: sdy:SDY_0407 putative thioredoxin-like protein; Thioredoxin domain protein 3353530 12706741 EcDH1_3118 Escherichia coli DH1 Thioredoxin domain protein YP_006093033.1 3352676 D 536056 CDS YP_006093034.1 386596634 12706742 complement(3353593..3354372) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: ssn:SSON_0480 putative metal resistance protein; hypothetical protein 3354372 12706742 EcDH1_3119 Escherichia coli DH1 hypothetical protein YP_006093034.1 3353593 R 536056 CDS YP_006093035.1 386596635 12706743 complement(3354359..3355036) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E0425 ABC transporter, ATP-binding protein; ABC transporter 3355036 12706743 EcDH1_3120 Escherichia coli DH1 ABC transporter YP_006093035.1 3354359 R 536056 CDS YP_006093036.1 386596636 12706744 3355182..3356099 1 NC_017625.1 PFAM: band 7 protein; KEGG: sbo:SBO_0391 putative protease; hypothetical protein 3356099 12706744 EcDH1_3121 Escherichia coli DH1 hypothetical protein YP_006093036.1 3355182 D 536056 CDS YP_006093037.1 386596637 12706745 3356096..3356554 1 NC_017625.1 PFAM: protein of unknown function DUF107; KEGG: sbc:SbBS512_E0423 nodulation efficiency family protein; hypothetical protein 3356554 12706745 EcDH1_3122 Escherichia coli DH1 hypothetical protein YP_006093037.1 3356096 D 536056 CDS YP_006093038.1 386596638 12706746 complement(3356555..3356962) 1 NC_017625.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sbc:SbBS512_E0422 Cu(I)-responsive transcriptional regulator; MerR family transcriptional regulator 3356962 12706746 EcDH1_3123 Escherichia coli DH1 MerR family transcriptional regulator YP_006093038.1 3356555 R 536056 CDS YP_006093039.1 386596639 12706747 complement(3357087..3358379) 1 NC_017625.1 PFAM: Spore germination protein; amino acid permease-associated region; KEGG: ssn:SSON_0475 putative amino acid/amine transport protein; amino acid permease 3358379 12706747 EcDH1_3124 Escherichia coli DH1 amino acid permease YP_006093039.1 3357087 R 536056 CDS YP_006093040.1 386596640 12706748 complement(3358382..3359314) 1 NC_017625.1 PFAM: Glutaminase, core; KEGG: ssn:SSON_0474 glutaminase; Glutaminase 3359314 12706748 EcDH1_3125 Escherichia coli DH1 Glutaminase YP_006093040.1 3358382 R 536056 CDS YP_006093041.1 386596641 12706749 3359576..3362080 1 NC_017625.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sfv:SFV_0457 copper exporting ATPase; copper-translocating P-type ATPase 3362080 12706749 EcDH1_3126 Escherichia coli DH1 copper-translocating P-type ATPase YP_006093041.1 3359576 D 536056 CDS YP_006093042.1 386596642 12706750 complement(3362396..3362791) 1 NC_017625.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E0418 addiction module antidote protein, HigA family; plasmid maintenance system antidote protein 3362791 12706750 EcDH1_3127 Escherichia coli DH1 plasmid maintenance system antidote protein YP_006093042.1 3362396 R 536056 CDS YP_006093043.1 386596643 12706751 3362875..3363669 1 NC_017625.1 PFAM: GumN family protein; KEGG: sfv:SFV_0455 putative ligase; GumN family protein 3363669 12706751 EcDH1_3128 Escherichia coli DH1 GumN family protein YP_006093043.1 3362875 D 536056 CDS YP_006093044.1 386596644 12706752 3363873..3364352 1 NC_017625.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sfv:SFV_0454 hypothetical protein; ybaK/ebsC protein 3364352 12706752 EcDH1_3129 Escherichia coli DH1 ybaK/ebsC protein YP_006093044.1 3363873 D 536056 CDS YP_006093045.1 386596645 12706753 complement(3364389..3366041) 1 NC_017625.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sbo:SBO_0382 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; 5'-nucleotidase 3366041 12706753 EcDH1_3130 Escherichia coli DH1 5'-nucleotidase YP_006093045.1 3364389 R 536056 CDS YP_006093046.1 386596646 12706754 3366259..3367479 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S0431 fosmidomycin resistance protein; major facilitator superfamily protein 3367479 12706754 EcDH1_3131 Escherichia coli DH1 major facilitator superfamily protein YP_006093046.1 3366259 D 536056 CDS YP_006093047.1 386596647 12706755 3367717..3369393 1 NC_017625.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: sbo:SBO_0378 putative cation:proton antiport protein; potassium efflux system protein 3369393 12706755 EcDH1_3132 Escherichia coli DH1 potassium efflux system protein YP_006093047.1 3367717 D 536056 CDS YP_006093048.1 386596648 12706756 complement(3369526..3370830) 1 NC_017625.1 PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E0409 inosine kinase; Inosine kinase 3370830 12706756 EcDH1_3133 Escherichia coli DH1 Inosine kinase YP_006093048.1 3369526 R 536056 CDS YP_006093049.1 386596649 12706757 3370982..3371941 1 NC_017625.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ssn:SSON_0463 acetyl esterase; Alpha/beta hydrolase fold-3 domain-containing protein 3371941 12706757 EcDH1_3134 Escherichia coli DH1 Alpha/beta hydrolase fold-3 domain-containing protein YP_006093049.1 3370982 D 536056 CDS YP_006093050.1 386596650 12706758 complement(3371938..3372900) 1 NC_017625.1 PFAM: ferrochelatase; KEGG: sdy:SDY_0444 ferrochelatase; ferrochelatase 3372900 12706758 EcDH1_3135 Escherichia coli DH1 ferrochelatase YP_006093050.1 3371938 R 536056 CDS YP_006093051.1 386596651 12706759 complement(3373136..3373780) 1 NC_017625.1 PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: sbc:SbBS512_E0406 adenylate kinase; Nucleoside-triphosphate--adenylate kinase 3373780 12706759 EcDH1_3136 Escherichia coli DH1 Nucleoside-triphosphate--adenylate kinase YP_006093051.1 3373136 R 536056 CDS YP_006093052.1 386596652 12706760 complement(3373961..3375835) 1 NC_017625.1 PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; KEGG: sbo:SBO_0373 heat shock protein 90; heat shock protein Hsp90 3375835 12706760 EcDH1_3137 Escherichia coli DH1 heat shock protein Hsp90 YP_006093052.1 3373961 R 536056 CDS YP_006093053.1 386596653 12706761 complement(3375945..3376550) 1 NC_017625.1 KEGG: sbc:SbBS512_E0404 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; recombination protein RecR 3376550 12706761 EcDH1_3138 Escherichia coli DH1 recombination protein RecR YP_006093053.1 3375945 R 536056 CDS YP_006093054.1 386596654 12706762 complement(3376550..3376879) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sdy:SDY_0448 hypothetical protein; hypothetical protein 3376879 12706762 EcDH1_3139 Escherichia coli DH1 hypothetical protein YP_006093054.1 3376550 R 536056 CDS YP_006093055.1 386596655 12706763 complement(3376932..3378863) 1 NC_017625.1 KEGG: sbc:SbBS512_E0402 DNA polymerase III, tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 3378863 12706763 EcDH1_3140 Escherichia coli DH1 DNA polymerase III subunits gamma and tau YP_006093055.1 3376932 R 536056 CDS YP_006093056.1 386596656 12706764 complement(3378992..3379543) 1 NC_017625.1 TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sdy:SDY_0450 adenine phosphoribosyltransferase; adenine phosphoribosyltransferase 3379543 12706764 EcDH1_3141 Escherichia coli DH1 adenine phosphoribosyltransferase YP_006093056.1 3378992 R 536056 CDS YP_006093057.1 386596657 12706765 complement(3379696..3380073) 1 NC_017625.1 PFAM: protein of unknown function DUF454; KEGG: sdy:SDY_0451 hypothetical protein; hypothetical protein 3380073 12706765 EcDH1_3142 Escherichia coli DH1 hypothetical protein YP_006093057.1 3379696 R 536056 CDS YP_006093058.1 386596658 12706766 3380143..3380670 1 NC_017625.1 PFAM: Primosomal replication priB and priC; KEGG: sbc:SbBS512_E0399 primosomal replication protein N''; primosomal replication priB and priC 3380670 12706766 EcDH1_3143 Escherichia coli DH1 primosomal replication priB and priC YP_006093058.1 3380143 D 536056 CDS YP_006093059.1 386596659 12706767 3380684..3380845 1 NC_017625.1 KEGG: sbc:SbBS512_E0398 hypothetical protein; hypothetical protein 3380845 12706767 EcDH1_3144 Escherichia coli DH1 hypothetical protein YP_006093059.1 3380684 D 536056 CDS YP_006093060.1 386596660 12706768 complement(3381057..3384419) 1 NC_017625.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ssn:SSON_0452 potassium efflux protein KefA; mechanosensitive ion channel protein MscS 3384419 12706768 EcDH1_3145 Escherichia coli DH1 mechanosensitive ion channel protein MscS YP_006093060.1 3381057 R 536056 CDS YP_006093061.1 386596661 12706769 complement(3384547..3385194) 1 NC_017625.1 PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: sdy:SDY_0455 DNA-binding transcriptional repressor; TetR family transcriptional regulator 3385194 12706769 EcDH1_3146 Escherichia coli DH1 TetR family transcriptional regulator YP_006093061.1 3384547 R 536056 CDS YP_006093062.1 386596662 12706770 3385336..3386529 1 NC_017625.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E0395 acriflavine resistance protein A; RND family efflux transporter MFP subunit 3386529 12706770 EcDH1_3147 Escherichia coli DH1 RND family efflux transporter MFP subunit YP_006093062.1 3385336 D 536056 CDS YP_006093063.1 386596663 12706771 3386552..3389701 1 NC_017625.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sbo:SBO_0362 acridine efflux pump; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3389701 12706771 EcDH1_3148 Escherichia coli DH1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_006093063.1 3386552 D 536056 CDS YP_006093064.1 386596664 12706772 3390247..3390621 1 NC_017625.1 KEGG: sdy:SDY_0458 hypothetical protein; hypothetical protein 3390621 12706772 EcDH1_3149 Escherichia coli DH1 hypothetical protein YP_006093064.1 3390247 D 536056 CDS YP_006093065.1 386596665 12706773 3390647..3390865 1 NC_017625.1 PFAM: Haemolysin expression modulating family protein; KEGG: sdy:SDY_0459 hemolysin expression-modulating protein; hemolysin expression modulating family protein 3390865 12706773 EcDH1_3150 Escherichia coli DH1 hemolysin expression modulating family protein YP_006093065.1 3390647 D 536056 CDS YP_006093066.1 386596666 12706774 3391037..3391588 1 NC_017625.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sdy:SDY_0460 maltose O-acetyltransferase; transferase hexapeptide repeat containing protein 3391588 12706774 EcDH1_3151 Escherichia coli DH1 transferase hexapeptide repeat containing protein YP_006093066.1 3391037 D 536056 CDS YP_006093067.1 386596667 12706775 3391704..3392174 1 NC_017625.1 KEGG: sdy:SDY_0461 hypothetical protein; hypothetical protein 3392174 12706775 EcDH1_3152 Escherichia coli DH1 hypothetical protein YP_006093067.1 3391704 D 536056 CDS YP_006093068.1 386596668 12706776 3392338..3393888 1 NC_017625.1 PFAM: EAL domain protein; KEGG: sfv:SFV_0431 hypothetical protein; EAL domain-containing protein 3393888 12706776 EcDH1_3153 Escherichia coli DH1 EAL domain-containing protein YP_006093068.1 3392338 D 536056 CDS YP_006093069.1 386596669 12706777 complement(3393930..3394283) 1 NC_017625.1 PFAM: protein of unknown function DUF1428; KEGG: sdy:SDY_0392 hypothetical protein; hypothetical protein 3394283 12706777 EcDH1_3154 Escherichia coli DH1 hypothetical protein YP_006093069.1 3393930 R 536056 CDS YP_006093070.1 386596670 12706779 3394662..3394973 1 NC_017625.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: sdy:SDY_0391 hypothetical protein; methylated-DNA--protein-cysteine methyltransferase 3394973 12706779 EcDH1_3155 Escherichia coli DH1 methylated-DNA--protein-cysteine methyltransferase YP_006093070.1 3394662 D 536056 CDS YP_006093071.1 386596671 12706780 complement(3395004..3395576) 1 NC_017625.1 KEGG: sfv:SFV_0427 hypothetical protein; hypothetical protein 3395576 12706780 EcDH1_3156 Escherichia coli DH1 hypothetical protein YP_006093071.1 3395004 R 536056 CDS YP_006093072.1 386596672 12706781 3395794..3396654 1 NC_017625.1 KEGG: ssn:SSON_0440 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 3396654 12706781 EcDH1_3157 Escherichia coli DH1 acyl-CoA thioesterase II YP_006093072.1 3395794 D 536056 CDS YP_006093073.1 386596673 12706782 complement(3396703..3397989) 1 NC_017625.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ssn:SSON_0439 ammonium transporter; ammonium transporter 3397989 12706782 EcDH1_3158 Escherichia coli DH1 ammonium transporter YP_006093073.1 3396703 R 536056 CDS YP_006093074.1 386596674 12706783 complement(3398019..3398357) 1 NC_017625.1 PFAM: nitrogen regulatory protein P-II; KEGG: sdy:SDY_0387 nitrogen regulatory protein P-II 2; nitrogen regulatory protein P-II 3398357 12706783 EcDH1_3159 Escherichia coli DH1 nitrogen regulatory protein P-II YP_006093074.1 3398019 R 536056 CDS YP_006093075.1 386596675 12706784 complement(3398538..3400319) 1 NC_017625.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_0344 putative multidrug transporter membrane\ATP-binding components; ABC transporter 3400319 12706784 EcDH1_3160 Escherichia coli DH1 ABC transporter YP_006093075.1 3398538 R 536056 CDS YP_006093076.1 386596676 12706785 complement(3400312..3402084) 1 NC_017625.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0385 putative multidrug transporter membrane\ATP-binding components; ABC transporter 3402084 12706785 EcDH1_3161 Escherichia coli DH1 ABC transporter YP_006093076.1 3400312 R 536056 CDS YP_006093077.1 386596677 12706786 complement(3402114..3402572) 1 NC_017625.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: sbc:SbBS512_E0370 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3402572 12706786 EcDH1_3162 Escherichia coli DH1 AsnC family transcriptional regulator YP_006093077.1 3402114 R 536056 CDS YP_006093078.1 386596678 12706787 complement(3402725..3403543) 1 NC_017625.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: sbc:SbBS512_E0369 hydrolase Cof; cof family hydrolase 3403543 12706787 EcDH1_3163 Escherichia coli DH1 cof family hydrolase YP_006093078.1 3402725 R 536056 CDS YP_006093079.1 386596679 12706788 3403643..3405343 1 NC_017625.1 PFAM: extracellular solute-binding protein family 5; KEGG: sbc:SbBS512_E0368 bacterial extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 3405343 12706788 EcDH1_3164 Escherichia coli DH1 family 5 extracellular solute-binding protein YP_006093079.1 3403643 D 536056 CDS YP_006093080.1 386596680 12706789 3405408..3406103 1 NC_017625.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: sbc:SbBS512_E0367 queuosine biosynthesis protein QueC; exsB protein 3406103 12706789 EcDH1_3165 Escherichia coli DH1 exsB protein YP_006093080.1 3405408 D 536056 CDS YP_006093081.1 386596681 12706790 complement(3406155..3406553) 1 NC_017625.1 PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E0366 thioesterase family protein; thioesterase superfamily protein 3406553 12706790 EcDH1_3166 Escherichia coli DH1 thioesterase superfamily protein YP_006093081.1 3406155 R 536056 CDS YP_006093082.1 386596682 12706791 complement(3406647..3407018) 1 NC_017625.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: sbc:SbBS512_E0365 competence protein ComEA; competence protein ComEA 3407018 12706791 EcDH1_3167 Escherichia coli DH1 competence protein ComEA YP_006093082.1 3406647 R 536056 CDS YP_006093083.1 386596683 12706792 complement(3407169..3409040) 1 NC_017625.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sbo:SBO_0335 peptidyl-prolyl cis-trans isomerase (rotamase D); PpiC-type peptidyl-prolyl cis-trans isomerase 3409040 12706792 EcDH1_3168 Escherichia coli DH1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_006093083.1 3407169 R 536056 CDS YP_006093084.1 386596684 12706793 complement(3409232..3409504) 1 NC_017625.1 PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_0292 transcriptional regulator HU subunit beta; histone family protein DNA-binding protein 3409504 12706793 EcDH1_3169 Escherichia coli DH1 histone family protein DNA-binding protein YP_006093084.1 3409232 R 536056 CDS YP_006093085.1 386596685 12706794 complement(3409713..3412067) 1 NC_017625.1 KEGG: ssn:SSON_0422 DNA-binding ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 3412067 12706794 EcDH1_3170 Escherichia coli DH1 ATP-dependent protease La YP_006093085.1 3409713 R 536056 CDS YP_006093086.1 386596686 12706795 complement(3412255..3413529) 1 NC_017625.1 KEGG: sdy:SDY_0294 ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: zinc finger C4 domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 3413529 12706795 EcDH1_3171 Escherichia coli DH1 ATP-dependent Clp protease ATP-binding subunit ClpX YP_006093086.1 3412255 R 536056 CDS YP_006093087.1 386596687 12706796 complement(3413655..3414278) 1 NC_017625.1 KEGG: sdy:SDY_0295 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 3414278 12706796 EcDH1_3172 Escherichia coli DH1 ATP-dependent Clp protease, proteolytic subunit ClpP YP_006093087.1 3413655 R 536056 CDS YP_006093088.1 386596688 12706797 complement(3414524..3415822) 1 NC_017625.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: ssn:SSON_0419 trigger factor; trigger factor 3415822 12706797 EcDH1_3173 Escherichia coli DH1 trigger factor YP_006093088.1 3414524 R 536056 CDS YP_006093089.1 386596689 12706798 complement(3416166..3416480) 1 NC_017625.1 PFAM: BolA family protein; KEGG: sdy:SDY_0298 transcriptional regulator BolA; BolA family protein 3416480 12706798 EcDH1_3174 Escherichia coli DH1 BolA family protein YP_006093089.1 3416166 R 536056 CDS YP_006093090.1 386596690 12706799 3416788..3417366 1 NC_017625.1 PFAM: Uncharacterized lipoprotein; KEGG: ssn:SSON_0417 hypothetical protein; lipoprotein 3417366 12706799 EcDH1_3175 Escherichia coli DH1 lipoprotein YP_006093090.1 3416788 D 536056 CDS YP_006093091.1 386596691 12706800 3417410..3418885 1 NC_017625.1 TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_0300 muropeptide transporter; AmpG-related permease 3418885 12706800 EcDH1_3176 Escherichia coli DH1 AmpG-related permease YP_006093091.1 3417410 D 536056 CDS YP_006093092.1 386596692 12706801 3419345..3420292 1 NC_017625.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: sbo:SBO_0326 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II 3420292 12706801 EcDH1_3177 Escherichia coli DH1 ubiquinol oxidase subunit II YP_006093092.1 3419345 D 536056 CDS YP_006093093.1 386596693 12706802 3420314..3422305 1 NC_017625.1 KEGG: ssn:SSON_0414 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 3422305 12706802 EcDH1_3178 Escherichia coli DH1 cytochrome o ubiquinol oxidase subunit I YP_006093093.1 3420314 D 536056 CDS YP_006093094.1 386596694 12706803 3422295..3422909 1 NC_017625.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: ssn:SSON_0413 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 3422909 12706803 EcDH1_3179 Escherichia coli DH1 cytochrome o ubiquinol oxidase subunit III YP_006093094.1 3422295 D 536056 CDS YP_006093095.1 386596695 12706804 3422909..3423238 1 NC_017625.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: sbo:SBO_0323 cytochrome o ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 3423238 12706804 EcDH1_3180 Escherichia coli DH1 cytochrome o ubiquinol oxidase subunit IV YP_006093095.1 3422909 D 536056 CDS YP_006093096.1 386596696 12706805 3423250..3424140 1 NC_017625.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: sbo:SBO_0322 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase 3424140 12706805 EcDH1_3181 Escherichia coli DH1 protoheme IX farnesyltransferase YP_006093096.1 3423250 D 536056 CDS YP_006093097.1 386596697 12706806 3424289..3425653 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_0303 putative transport protein; major facilitator superfamily protein 3425653 12706806 EcDH1_3182 Escherichia coli DH1 major facilitator superfamily protein YP_006093097.1 3424289 D 536056 CDS YP_006093098.1 386596698 12706807 complement(3425781..3426272) 1 NC_017625.1 PFAM: protein of unknown function DUF520; KEGG: sbc:SbBS512_E0348 hypothetical protein; hypothetical protein 3426272 12706807 EcDH1_3183 Escherichia coli DH1 hypothetical protein YP_006093098.1 3425781 R 536056 CDS YP_006093099.1 386596699 12706808 3426440..3427351 1 NC_017625.1 KEGG: ssn:SSON_0402 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 3427351 12706808 EcDH1_3184 Escherichia coli DH1 2-dehydropantoate 2-reductase YP_006093099.1 3426440 D 536056 CDS YP_006093100.1 386596700 12706809 3427314..3427904 1 NC_017625.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: sbc:SbBS512_E0346 protein ThiJ; DJ-1 family protein 3427904 12706809 EcDH1_3185 Escherichia coli DH1 DJ-1 family protein YP_006093100.1 3427314 D 536056 CDS YP_006093101.1 386596701 12706810 complement(3427958..3429406) 1 NC_017625.1 TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; KEGG: sfv:SFV_0388 thiamine biosynthesis protein ThiI; thiamine biosynthesis/tRNA modification protein ThiI 3429406 12706810 EcDH1_3186 Escherichia coli DH1 thiamine biosynthesis/tRNA modification protein ThiI YP_006093101.1 3427958 R 536056 CDS YP_006093102.1 386596702 12706811 3429612..3429854 1 NC_017625.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: sdy:SDY_0308 exodeoxyribonuclease VII small subunit; exodeoxyribonuclease VII small subunit 3429854 12706811 EcDH1_3187 Escherichia coli DH1 exodeoxyribonuclease VII small subunit YP_006093102.1 3429612 D 536056 CDS YP_006093103.1 386596703 12706812 3429854..3430753 1 NC_017625.1 PFAM: Polyprenyl synthetase; KEGG: sdy:SDY_0309 geranyltranstransferase; polyprenyl synthetase 3430753 12706812 EcDH1_3188 Escherichia coli DH1 polyprenyl synthetase YP_006093103.1 3429854 D 536056 CDS YP_006093104.1 386596704 12706813 3430778..3432640 1 NC_017625.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: sbc:SbBS512_E0341 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 3432640 12706813 EcDH1_3189 Escherichia coli DH1 deoxyxylulose-5-phosphate synthase YP_006093104.1 3430778 D 536056 CDS YP_006093105.1 386596705 12706814 3432820..3433794 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: sbc:SbBS512_E0340 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3433794 12706814 EcDH1_3190 Escherichia coli DH1 aldo/keto reductase YP_006093105.1 3432820 D 536056 CDS YP_006093106.1 386596706 12706815 complement(3433848..3434366) 1 NC_017625.1 PFAM: phosphatidylglycerophosphatase A; KEGG: sbc:SbBS512_E0339 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 3434366 12706815 EcDH1_3191 Escherichia coli DH1 phosphatidylglycerophosphatase A YP_006093106.1 3433848 R 536056 CDS YP_006093107.1 386596707 12706816 complement(3434344..3435321) 1 NC_017625.1 KEGG: sbc:SbBS512_E0338 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 3435321 12706816 EcDH1_3192 Escherichia coli DH1 thiamine-monophosphate kinase YP_006093107.1 3434344 R 536056 CDS YP_006093108.1 386596708 12706817 complement(3435399..3435818) 1 NC_017625.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: sdy:SDY_0318 transcription antitermination protein NusB; NusB antitermination factor 3435818 12706817 EcDH1_3193 Escherichia coli DH1 NusB antitermination factor YP_006093108.1 3435399 R 536056 CDS YP_006093109.1 386596709 12706818 complement(3435838..3436308) 1 NC_017625.1 KEGG: kpn:KPN_00367 riboflavin synthase subunit beta; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 3436308 12706818 EcDH1_3194 Escherichia coli DH1 6,7-dimethyl-8-ribityllumazine synthase YP_006093109.1 3435838 R 536056 CDS YP_006093110.1 386596710 12706819 complement(3436397..3437500) 1 NC_017625.1 KEGG: sbc:SbBS512_E0335 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 3437500 12706819 EcDH1_3195 Escherichia coli DH1 riboflavin biosynthesis protein RibD YP_006093110.1 3436397 R 536056 CDS YP_006093111.1 386596711 12706820 complement(3437504..3437953) 1 NC_017625.1 PFAM: ATP-cone domain protein; KEGG: sdy:SDY_0321 hypothetical protein; ATP-cone domain-containing protein 3437953 12706820 EcDH1_3196 Escherichia coli DH1 ATP-cone domain-containing protein YP_006093111.1 3437504 R 536056 CDS YP_006093112.1 386596712 12706821 3438104..3438643 1 NC_017625.1 KEGG: ssn:SSON_0389 hypothetical protein; hypothetical protein 3438643 12706821 EcDH1_3197 Escherichia coli DH1 hypothetical protein YP_006093112.1 3438104 D 536056 CDS YP_006093113.1 386596713 12706822 3438942..3439826 1 NC_017625.1 PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: sdy:SDY_0323 nucleoside channel; nucleoside-specific channel-forming protein Tsx 3439826 12706822 EcDH1_3198 Escherichia coli DH1 nucleoside-specific channel-forming protein Tsx YP_006093113.1 3438942 D 536056 CDS YP_006093114.1 386596714 12706823 complement(3440003..3440350) 1 NC_017625.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sdy:SDY_0324 hypothetical protein; HNH endonuclease 3440350 12706823 EcDH1_3199 Escherichia coli DH1 HNH endonuclease YP_006093114.1 3440003 R 536056 CDS YP_006093115.1 386596715 12706824 complement(3440479..3441450) 1 NC_017625.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sbc:SbBS512_E0328 protein-export membrane protein SecF; protein-export membrane protein SecF 3441450 12706824 EcDH1_3200 Escherichia coli DH1 protein-export membrane protein SecF YP_006093115.1 3440479 R 536056 CDS YP_006093116.1 386596716 12706825 complement(3441461..3443275) 1 NC_017625.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sdy:SDY_0326 preprotein translocase subunit SecD; protein-export membrane protein SecD 3443275 12706825 EcDH1_3201 Escherichia coli DH1 protein-export membrane protein SecD YP_006093116.1 3441461 R 536056 CDS YP_006093117.1 386596717 12706826 complement(3443336..3443668) 1 NC_017625.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: sdy:SDY_0327 preprotein translocase subunit YajC; preprotein translocase subunit YajC 3443668 12706826 EcDH1_3202 Escherichia coli DH1 preprotein translocase subunit YajC YP_006093117.1 3443336 R 536056 CDS YP_006093118.1 386596718 12706827 complement(3443691..3444818) 1 NC_017625.1 KEGG: sdy:SDY_0328 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 3444818 12706827 EcDH1_3203 Escherichia coli DH1 queuine tRNA-ribosyltransferase YP_006093118.1 3443691 R 536056 CDS YP_006093119.1 386596719 12706828 complement(3444874..3445944) 1 NC_017625.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: sdy:SDY_0329 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 3445944 12706828 EcDH1_3204 Escherichia coli DH1 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_006093119.1 3444874 R 536056 CDS YP_006093120.1 386596720 12706829 3446037..3446618 1 NC_017625.1 PFAM: protein of unknown function DUF479; KEGG: ssn:SSON_0381 acyl carrier protein phosphodiesterase; ACP phosphodiesterase 3446618 12706829 EcDH1_3205 Escherichia coli DH1 ACP phosphodiesterase YP_006093120.1 3446037 D 536056 CDS YP_006093121.1 386596721 12706830 complement(3446623..3448440) 1 NC_017625.1 PFAM: glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sfx:S0348 maltodextrin glucosidase; alpha amylase 3448440 12706830 EcDH1_3206 Escherichia coli DH1 alpha amylase YP_006093121.1 3446623 R 536056 CDS YP_006093122.1 386596722 12706831 complement(3448596..3449969) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_0335 proline permease transport protein; amino acid permease 3449969 12706831 EcDH1_3207 Escherichia coli DH1 amino acid permease YP_006093122.1 3448596 R 536056 CDS YP_006093123.1 386596723 12706832 complement(3450045..3451364) 1 NC_017625.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: sdy:SDY_0336 branched chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 3451364 12706832 EcDH1_3208 Escherichia coli DH1 branched-chain amino acid transport system II carrier protein YP_006093123.1 3450045 R 536056 CDS YP_006093124.1 386596724 12706833 complement(3451771..3453066) 1 NC_017625.1 KEGG: sbo:SBO_0294 phosphate regulon sensor protein; TIGRFAM: PAS sensor protein; phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 3453066 12706833 EcDH1_3209 Escherichia coli DH1 PAS/PAC sensor signal transduction histidine kinase YP_006093124.1 3451771 R 536056 CDS YP_006093125.1 386596725 12706834 complement(3453124..3453813) 1 NC_017625.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbc:SbBS512_E0318 phosphate regulon transcriptional regulatory protein PhoB; winged helix family two component transcriptional regulator PhoB 3453813 12706834 EcDH1_3210 Escherichia coli DH1 winged helix family two component transcriptional regulator PhoB YP_006093125.1 3453124 R 536056 CDS YP_006093126.1 386596726 12706835 3454003..3455205 1 NC_017625.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: ssn:SSON_0375 exonuclease subunit SbcD; nuclease SbcCD subunit D 3455205 12706835 EcDH1_3211 Escherichia coli DH1 nuclease SbcCD subunit D YP_006093126.1 3454003 D 536056 CDS YP_006093127.1 386596727 12706836 3455202..3458348 1 NC_017625.1 TIGRFAM: exonuclease SbcC; PFAM: SMC domain protein; KEGG: sfv:SFV_0362 exonuclease subunit SbcC; exonuclease SbcC 3458348 12706836 EcDH1_3212 Escherichia coli DH1 exonuclease SbcC YP_006093127.1 3455202 D 536056 CDS YP_006093128.1 386596728 12706837 3458390..3459658 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E0315 protein AraJ; major facilitator superfamily protein 3459658 12706837 EcDH1_3213 Escherichia coli DH1 major facilitator superfamily protein YP_006093128.1 3458390 D 536056 CDS YP_006093129.1 386596729 12706838 complement(3459903..3460811) 1 NC_017625.1 PFAM: ROK family protein; KEGG: ssn:SSON_0371 fructokinase; ROK family protein 3460811 12706838 EcDH1_3214 Escherichia coli DH1 ROK family protein YP_006093129.1 3459903 R 536056 CDS YP_006093130.1 386596730 12706839 3460870..3461847 1 NC_017625.1 PFAM: putative exonuclease RdgC; KEGG: cko:CKO_02778 recombination associated protein; putative exonuclease RdgC 3461847 12706839 EcDH1_3215 Escherichia coli DH1 putative exonuclease RdgC YP_006093130.1 3460870 D 536056 CDS YP_006093131.1 386596731 12706840 3462208..3462327 1 NC_017625.1 KEGG: sbc:SbBS512_E0309 hypothetical protein; hypothetical protein 3462327 12706840 EcDH1_3216 Escherichia coli DH1 hypothetical protein YP_006093131.1 3462208 D 536056 CDS YP_006093132.1 386596732 12706841 complement(3462494..3462778) 1 NC_017625.1 PFAM: protein of unknown function DUF1255; KEGG: sbc:SbBS512_E0308 hypothetical protein; hypothetical protein 3462778 12706841 EcDH1_3217 Escherichia coli DH1 hypothetical protein YP_006093132.1 3462494 R 536056 CDS YP_006093133.1 386596733 12706842 complement(3462850..3463527) 1 NC_017625.1 PFAM: AroM family protein; KEGG: sbc:SbBS512_E0307 AroM protein; AroM family protein 3463527 12706842 EcDH1_3218 Escherichia coli DH1 AroM family protein YP_006093133.1 3462850 R 536056 CDS YP_006093134.1 386596734 12706843 complement(3463785..3463976) 1 NC_017625.1 KEGG: sbc:SbBS512_E0306 hypothetical protein; hypothetical protein 3463976 12706843 EcDH1_3219 Escherichia coli DH1 hypothetical protein YP_006093134.1 3463785 R 536056 CDS YP_006093135.1 386596735 12706844 complement(3464026..3464550) 1 NC_017625.1 PFAM: shikimate kinase; KEGG: sbo:SBO_0283 shikimate kinase II; shikimate kinase 3464550 12706844 EcDH1_3220 Escherichia coli DH1 shikimate kinase YP_006093135.1 3464026 R 536056 CDS YP_006093136.1 386596736 12706845 complement(3464733..3465191) 1 NC_017625.1 PFAM: protein of unknown function DUF188; KEGG: sdy:SDY_0357 hypothetical protein; hypothetical protein 3465191 12706845 EcDH1_3221 Escherichia coli DH1 hypothetical protein YP_006093136.1 3464733 R 536056 CDS YP_006093137.1 386596737 12706846 3465311..3466120 1 NC_017625.1 KEGG: sfx:S0330 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; pyrroline-5-carboxylate reductase 3466120 12706846 EcDH1_3222 Escherichia coli DH1 pyrroline-5-carboxylate reductase YP_006093137.1 3465311 D 536056 CDS YP_006093138.1 386596738 12706847 complement(3466137..3467252) 1 NC_017625.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: sdy:SDY_0358 hypothetical protein; diguanylate cyclase 3467252 12706847 EcDH1_3223 Escherichia coli DH1 diguanylate cyclase YP_006093138.1 3466137 R 536056 CDS YP_006093139.1 386596739 12706848 complement(3467354..3467674) 1 NC_017625.1 PFAM: PsiF repeat protein; KEGG: sbc:SbBS512_E0301 phosphate starvation-inducible protein PsiF; PsiF repeat protein 3467674 12706848 EcDH1_3224 Escherichia coli DH1 PsiF repeat protein YP_006093139.1 3467354 R 536056 CDS YP_006093140.1 386596740 12706849 complement(3467793..3469208) 1 NC_017625.1 PFAM: Alkaline phosphatase; KEGG: sbo:SBO_0278 bacterial alkaline phosphatase; alkaline phosphatase 3469208 12706849 EcDH1_3225 Escherichia coli DH1 alkaline phosphatase YP_006093140.1 3467793 R 536056 CDS YP_006093141.1 386596741 12706850 complement(3469309..3469569) 1 NC_017625.1 KEGG: ssn:SSON_0357 hypothetical protein; hypothetical protein 3469569 12706850 EcDH1_3226 Escherichia coli DH1 hypothetical protein YP_006093141.1 3469309 R 536056 CDS YP_006093142.1 386596742 12706851 3470032..3471126 1 NC_017625.1 KEGG: sfx:S0254 D-alanyl-alanine synthetase A; TIGRFAM: D-alanine/D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 3471126 12706851 EcDH1_3227 Escherichia coli DH1 D-alanine--D-alanine ligase YP_006093142.1 3470032 D 536056 CDS YP_006093143.1 386596743 12706852 complement(3471150..3471362) 1 NC_017625.1 KEGG: sdy:SDY_0366 hypothetical protein; hypothetical protein 3471362 12706852 EcDH1_3228 Escherichia coli DH1 hypothetical protein YP_006093143.1 3471150 R 536056 CDS YP_006093144.1 386596744 12706853 3471622..3471930 1 NC_017625.1 KEGG: sbc:SbBS512_E0296 hypothetical protein; hypothetical protein 3471930 12706853 EcDH1_3229 Escherichia coli DH1 hypothetical protein YP_006093144.1 3471622 D 536056 CDS YP_006093145.1 386596745 12706854 complement(3471989..3473083) 1 NC_017625.1 PFAM: protein of unknown function DUF1615; KEGG: sdy:SDY_0368 hypothetical protein; hypothetical protein 3473083 12706854 EcDH1_3230 Escherichia coli DH1 hypothetical protein YP_006093145.1 3471989 R 536056 CDS YP_006093146.1 386596746 12706855 complement(3473096..3474316) 1 NC_017625.1 PFAM: SbmABacA family protein; ABC transporter domain protein; KEGG: sdy:SDY_0369 transport protein; SbmABacA family protein 3474316 12706855 EcDH1_3231 Escherichia coli DH1 SbmABacA family protein YP_006093146.1 3473096 R 536056 CDS YP_006093147.1 386596747 12706856 3474521..3474622 1 NC_017625.1 hypothetical protein 3474622 12706856 EcDH1_3232 Escherichia coli DH1 hypothetical protein YP_006093147.1 3474521 D 536056 CDS YP_006093148.1 386596748 12706857 3474668..3475825 1 NC_017625.1 PFAM: beta-lactamase; KEGG: sbc:SbBS512_E0293 penicillin-binding protein AmpH; beta-lactamase 3475825 12706857 EcDH1_3233 Escherichia coli DH1 beta-lactamase YP_006093148.1 3474668 D 536056 CDS YP_006093149.1 386596749 12706858 complement(3475826..3476449) 1 NC_017625.1 KEGG: ssn:SSON_0350 putative DNA-binding transcriptional regulator; Crp family transcriptional regulator 3476449 12706858 EcDH1_3234 Escherichia coli DH1 Crp family transcriptional regulator YP_006093149.1 3475826 R 536056 CDS YP_006093150.1 386596750 12706860 3478054..3478353 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein 3478353 12706860 EcDH1_3236 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006093150.1 3478054 D 536056 CDS YP_006093151.1 386596751 12706861 3478350..3479216 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit 3479216 12706861 EcDH1_3237 Escherichia coli DH1 integrase catalytic subunit YP_006093151.1 3478350 D 536056 CDS YP_006093152.1 386596752 12706862 3481228..3482202 1 NC_017625.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: sdy:SDY_0501 delta-aminolevulinic acid dehydratase; porphobilinogen synthase 3482202 12706862 EcDH1_3238 Escherichia coli DH1 porphobilinogen synthase YP_006093152.1 3481228 D 536056 CDS YP_006093153.1 386596753 12706863 complement(3482309..3483160) 1 NC_017625.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ssn:SSON_0346 taurine dioxygenase; taurine dioxygenase 3483160 12706863 EcDH1_3239 Escherichia coli DH1 taurine dioxygenase YP_006093153.1 3482309 R 536056 CDS YP_006093154.1 386596754 12706864 complement(3483157..3483984) 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_0331 taurine transporter subunit; binding-protein-dependent transport system inner membrane protein 3483984 12706864 EcDH1_3240 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006093154.1 3483157 R 536056 CDS YP_006093155.1 386596755 12706865 complement(3483981..3484748) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0344 taurine transporter ATP-binding subunit; ABC transporter 3484748 12706865 EcDH1_3241 Escherichia coli DH1 ABC transporter YP_006093155.1 3483981 R 536056 CDS YP_006093156.1 386596756 12706866 complement(3484761..3485723) 1 NC_017625.1 KEGG: ssn:SSON_0343 taurine transporter substrate binding subunit; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; taurine ABC transporter substrate-binding protein 3485723 12706866 EcDH1_3242 Escherichia coli DH1 taurine ABC transporter substrate-binding protein YP_006093156.1 3484761 R 536056 CDS YP_006093157.1 386596757 12706868 3487020..3488216 1 NC_017625.1 PFAM: glycosyl transferase family 2; KEGG: sml:Smlt0216 putative transmembrane glycosyl transferase; family 2 glycosyl transferase 3488216 12706868 EcDH1_3244 Escherichia coli DH1 family 2 glycosyl transferase YP_006093157.1 3487020 D 536056 CDS YP_006093158.1 386596758 12706869 complement(3488376..3489281) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 3489281 12706869 EcDH1_3245 Escherichia coli DH1 integrase catalytic subunit YP_006093158.1 3488376 R 536056 CDS YP_006093159.1 386596759 12706870 complement(3489239..3489604) 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 3489604 12706870 EcDH1_3246 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006093159.1 3489239 R 536056 CDS YP_006093160.1 386596760 12706871 3489668..3490111 1 NC_017625.1 KEGG: sbc:SbBS512_E0275 putative acyltransferase; putative acyltransferase 3490111 12706871 EcDH1_3247 Escherichia coli DH1 putative acyltransferase YP_006093160.1 3489668 D 536056 CDS YP_006093161.1 386596761 12706872 3490113..3490886 1 NC_017625.1 KEGG: sbc:SbBS512_E0274 hypothetical protein; hypothetical protein 3490886 12706872 EcDH1_3248 Escherichia coli DH1 hypothetical protein YP_006093161.1 3490113 D 536056 CDS YP_006093162.1 386596762 12706873 3491074..3491349 1 NC_017625.1 PFAM: protein of unknown function DUF156; KEGG: sbc:SbBS512_E0272 hypothetical protein; hypothetical protein 3491349 12706873 EcDH1_3249 Escherichia coli DH1 hypothetical protein YP_006093162.1 3491074 D 536056 CDS YP_006093163.1 386596763 12706874 3491384..3492493 1 NC_017625.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbc:SbBS512_E0271 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3492493 12706874 EcDH1_3250 Escherichia coli DH1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_006093163.1 3491384 D 536056 CDS YP_006093164.1 386596764 12706875 3492587..3493420 1 NC_017625.1 KEGG: ssn:SSON_0334 putative esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 3493420 12706875 EcDH1_3251 Escherichia coli DH1 S-formylglutathione hydrolase YP_006093164.1 3492587 D 536056 CDS YP_006093165.1 386596765 12706876 complement(3493644..3494183) 1 NC_017625.1 KEGG: ssn:SSON_0333 nucleoprotein/polynucleotide-associated enzyme; nucleoprotein/polynucleotide-associated enzyme 3494183 12706876 EcDH1_3252 Escherichia coli DH1 nucleoprotein/polynucleotide-associated enzyme YP_006093165.1 3493644 R 536056 CDS YP_006093166.1 386596766 12706877 complement(3494285..3495496) 1 NC_017625.1 TIGRFAM: benzoate transport; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_0332 putative 3-hydroxyphenylpropionic transporter MhpT; benzoate transport 3495496 12706877 EcDH1_3253 Escherichia coli DH1 benzoate transport YP_006093166.1 3494285 R 536056 CDS YP_006093167.1 386596767 12706878 complement(3496074..3497087) 1 NC_017625.1 TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; PFAM: pyruvate carboxyltransferase; DmpG communication domain protein; KEGG: ssn:SSON_0331 4-hydroxy-2-ketovalerate aldolase; 4-hydroxy-2-oxovalerate aldolase 3497087 12706878 EcDH1_3254 Escherichia coli DH1 4-hydroxy-2-oxovalerate aldolase YP_006093167.1 3496074 R 536056 CDS YP_006093168.1 386596768 12706879 complement(3497084..3498034) 1 NC_017625.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Semialdehyde dehydrogenase NAD - binding; Acetaldehyde dehydrogenase; KEGG: ssn:SSON_0330 acetaldehyde dehydrogenase; acetaldehyde dehydrogenase 3498034 12706879 EcDH1_3255 Escherichia coli DH1 acetaldehyde dehydrogenase YP_006093168.1 3497084 R 536056 CDS YP_006093169.1 386596769 12706880 complement(3498031..3498840) 1 NC_017625.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ssn:SSON_0329 2-keto-4-pentenoate hydratase; 4-oxalocrotonate decarboxylase 3498840 12706880 EcDH1_3256 Escherichia coli DH1 4-oxalocrotonate decarboxylase YP_006093169.1 3498031 R 536056 CDS YP_006093170.1 386596770 12706881 complement(3498850..3499716) 1 NC_017625.1 PFAM: alpha/beta hydrolase fold; KEGG: kpe:KPK_2203 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold protein 3499716 12706881 EcDH1_3257 Escherichia coli DH1 alpha/beta hydrolase fold protein YP_006093170.1 3498850 R 536056 CDS YP_006093171.1 386596771 12706882 complement(3499734..3500678) 1 NC_017625.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ssn:SSON_0295 2,3-dihydroxyphenylpropionate 1,2-dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B 3500678 12706882 EcDH1_3258 Escherichia coli DH1 extradiol ring-cleavage dioxygenase class III protein subunit B YP_006093171.1 3499734 R 536056 CDS YP_006093172.1 386596772 12706883 complement(3500680..3502344) 1 NC_017625.1 PFAM: monooxygenase FAD-binding; KEGG: ssn:SSON_0297 3-(3-hydroxyphenyl)propionate hydroxylase; monooxygenase FAD-binding protein 3502344 12706883 EcDH1_3259 Escherichia coli DH1 monooxygenase FAD-binding protein YP_006093172.1 3500680 R 536056 CDS YP_006093173.1 386596773 12706884 3502523..3503368 1 NC_017625.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: kpe:KPK_2200 Mhp operon transcriptional activator; IclR family transcriptional regulator 3503368 12706884 EcDH1_3260 Escherichia coli DH1 IclR family transcriptional regulator YP_006093173.1 3502523 D 536056 CDS YP_006093174.1 386596774 12706885 3503436..3504527 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_0298 lac repressor; LacI family transcriptional regulator 3504527 12706885 EcDH1_3261 Escherichia coli DH1 LacI family transcriptional regulator YP_006093174.1 3503436 D 536056 CDS YP_006093175.1 386596775 12706886 3504650..3507724 1 NC_017625.1 PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: ssn:SSON_0299 beta-D-galactosidase; glycoside hydrolase family protein 3507724 12706886 EcDH1_3262 Escherichia coli DH1 glycoside hydrolase family protein YP_006093175.1 3504650 D 536056 CDS YP_006093176.1 386596776 12706887 3507776..3509029 1 NC_017625.1 TIGRFAM: oligosaccharide/H+ symporter, major facilitator superfamily (MFS); PFAM: proton/sugar symporter LacY; major facilitator superfamily MFS_1; KEGG: kpn:KPN_pKPN3p05870 galactoside permease (lactose permease, M protein) (MFS family); oligosaccharide/H+ symporter, major facilitator superfamily (MFS) 3509029 12706887 EcDH1_3263 Escherichia coli DH1 oligosaccharide/H+ symporter, major facilitator superfamily (MFS) YP_006093176.1 3507776 D 536056 CDS YP_006093177.1 386596777 12706888 3509101..3509706 1 NC_017625.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: cpf:CPF_0251 galactoside O-acetyltransferase; transferase hexapeptide repeat containing protein 3509706 12706888 EcDH1_3264 Escherichia coli DH1 transferase hexapeptide repeat containing protein YP_006093177.1 3509101 D 536056 CDS YP_006093178.1 386596778 12706889 complement(3509809..3510990) 1 NC_017625.1 TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: kpe:KPK_1405 cyanate transporter; cyanate transporter 3510990 12706889 EcDH1_3265 Escherichia coli DH1 cyanate transporter YP_006093178.1 3509809 R 536056 CDS YP_006093179.1 386596779 12706890 complement(3510996..3511466) 1 NC_017625.1 KEGG: bcm:Bcenmc03_4127 cyanate lyase; TIGRFAM: cyanate lyase; PFAM: Cyanate lyase domain protein; cyanate lyase 3511466 12706890 EcDH1_3266 Escherichia coli DH1 cyanate lyase YP_006093179.1 3510996 R 536056 CDS YP_006093180.1 386596780 12706891 complement(3511497..3512156) 1 NC_017625.1 PFAM: carbonic anhydrase; KEGG: pen:PSEEN3600 carbonic anhydrase; carbonate dehydratase 3512156 12706891 EcDH1_3267 Escherichia coli DH1 carbonate dehydratase YP_006093180.1 3511497 R 536056 CDS YP_006093181.1 386596781 12706892 3512265..3513164 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3601 DNA-binding transcriptional regulator CynR; LysR family transcriptional regulator 3513164 12706892 EcDH1_3268 Escherichia coli DH1 LysR family transcriptional regulator YP_006093181.1 3512265 D 536056 CDS YP_006093182.1 386596782 12706893 complement(3513501..3514784) 1 NC_017625.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: yen:YE3964 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 3514784 12706893 EcDH1_3269 Escherichia coli DH1 N-isopropylammelide isopropylaminohydrolase YP_006093182.1 3513501 R 536056 CDS YP_006093183.1 386596783 12706894 complement(3514774..3516033) 1 NC_017625.1 TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pmr:PMI1458 cytosine permease; NCS1 nucleoside transporter family 3516033 12706894 EcDH1_3270 Escherichia coli DH1 NCS1 nucleoside transporter family YP_006093183.1 3514774 R 536056 CDS YP_006093184.1 386596784 12706895 complement(3516363..3518249) 1 NC_017625.1 TIGRFAM: propionate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cko:CKO_02827 propionyl-CoA synthetase; propionate/CoA ligase 3518249 12706895 EcDH1_3271 Escherichia coli DH1 propionate/CoA ligase YP_006093184.1 3516363 R 536056 CDS YP_006093185.1 386596785 12706896 complement(3518289..3519740) 1 NC_017625.1 KEGG: cko:CKO_02828 2-methylcitrate dehydratase; TIGRFAM: 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein; 2-methylcitrate dehydratase 3519740 12706896 EcDH1_3272 Escherichia coli DH1 2-methylcitrate dehydratase YP_006093185.1 3518289 R 536056 CDS YP_006093186.1 386596786 12706897 complement(3519774..3520943) 1 NC_017625.1 KEGG: cko:CKO_02829 methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 3520943 12706897 EcDH1_3273 Escherichia coli DH1 2-methylcitrate synthase/citrate synthase II YP_006093186.1 3519774 R 536056 CDS YP_006093187.1 386596787 12706898 3520991..3521437 1 NC_017625.1 KEGG: hypothetical protein; hypothetical protein 3521437 12706898 EcDH1_3274 Escherichia coli DH1 hypothetical protein YP_006093187.1 3520991 D 536056 CDS YP_006093188.1 386596788 12706899 complement(3521383..3522273) 1 NC_017625.1 TIGRFAM: methylisocitrate lyase; KEGG: cko:CKO_02830 2-methylisocitrate lyase; methylisocitrate lyase 3522273 12706899 EcDH1_3275 Escherichia coli DH1 methylisocitrate lyase YP_006093188.1 3521383 R 536056 CDS YP_006093189.1 386596789 12706900 3522512..3524098 1 NC_017625.1 KEGG: cko:CKO_02831 hypothetical protein; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; SMART: AAA ATPase; Fis family proprionate catabolism activator 3524098 12706900 EcDH1_3276 Escherichia coli DH1 Fis family proprionate catabolism activator YP_006093189.1 3522512 D 536056 CDS YP_006093190.1 386596790 12706901 complement(3524196..3524471) 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: cko:CKO_02832 hypothetical protein; hypothetical protein 3524471 12706901 EcDH1_3277 Escherichia coli DH1 hypothetical protein YP_006093190.1 3524196 R 536056 CDS YP_006093191.1 386596791 12706902 3524618..3525289 1 NC_017625.1 TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ssn:SSON_0302 putative cytochrome subunit of dehydrogenase; homoserine/threonine efflux pump 3525289 12706902 EcDH1_3278 Escherichia coli DH1 homoserine/threonine efflux pump YP_006093191.1 3524618 D 536056 CDS YP_006093192.1 386596792 12706903 complement(3525306..3525551) 1 NC_017625.1 KEGG: ssn:SSON_0303 hypothetical protein; hypothetical protein 3525551 12706903 EcDH1_3279 Escherichia coli DH1 hypothetical protein YP_006093192.1 3525306 R 536056 CDS YP_006093193.1 386596793 12706905 complement(3525964..3526779) 1 NC_017625.1 KEGG: ssn:SSON_0306 hypothetical protein; hypothetical protein 3526779 12706905 EcDH1_3280 Escherichia coli DH1 hypothetical protein YP_006093193.1 3525964 R 536056 CDS YP_006093194.1 386596794 12706906 complement(3527022..3528071) 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_0308 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein 3528071 12706906 EcDH1_3281 Escherichia coli DH1 alcohol dehydrogenase GroES domain-containing protein YP_006093194.1 3527022 R 536056 CDS YP_006093195.1 386596795 12706907 complement(3528448..3529830) 1 NC_017625.1 PFAM: Amidohydrolase 3; KEGG: ssn:SSON_0309 deaminase; amidohydrolase 3529830 12706907 EcDH1_3282 Escherichia coli DH1 amidohydrolase YP_006093195.1 3528448 R 536056 CDS YP_006093196.1 386596796 12706908 complement(3529840..3530790) 1 NC_017625.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: ssn:SSON_0310 putative carbamate kinase; Carbamate kinase 3530790 12706908 EcDH1_3283 Escherichia coli DH1 Carbamate kinase YP_006093196.1 3529840 R 536056 CDS YP_006093197.1 386596797 12706909 complement(3530866..3531162) 1 NC_017625.1 hypothetical protein 3531162 12706909 EcDH1_3284 Escherichia coli DH1 hypothetical protein YP_006093197.1 3530866 R 536056 CDS YP_006093198.1 386596798 12706910 complement(3531212..3532630) 1 NC_017625.1 PFAM: protein of unknown function DUF1116; KEGG: ssn:SSON_0311 hypothetical protein; hypothetical protein 3532630 12706910 EcDH1_3285 Escherichia coli DH1 hypothetical protein YP_006093198.1 3531212 R 536056 CDS YP_006093199.1 386596799 12706911 complement(3532630..3534177) 1 NC_017625.1 PFAM: FdrA family protein; KEGG: ssn:SSON_0312 putative oxidoreductase subunit; FdrA family protein 3534177 12706911 EcDH1_3286 Escherichia coli DH1 FdrA family protein YP_006093199.1 3532630 R 536056 CDS YP_006093200.1 386596800 12706912 complement(3534167..3535030) 1 NC_017625.1 KEGG: ssn:SSON_0313 hypothetical protein; hypothetical protein 3535030 12706912 EcDH1_3287 Escherichia coli DH1 hypothetical protein YP_006093200.1 3534167 R 536056 CDS YP_006093201.1 386596801 12706913 complement(3535070..3535675) 1 NC_017625.1 PFAM: Ankyrin; KEGG: ent:Ent638_3145 ankyrin; ankyrin 3535675 12706913 EcDH1_3288 Escherichia coli DH1 ankyrin YP_006093201.1 3535070 R 536056 CDS YP_006093202.1 386596802 12706914 3535933..3536430 1 NC_017625.1 PFAM: protein of unknown function DUF1097; KEGG: ctc:CTC01779 glutathione-regulated potassium-efflux system protein; hypothetical protein 3536430 12706914 EcDH1_3289 Escherichia coli DH1 hypothetical protein YP_006093202.1 3535933 D 536056 CDS YP_006093203.1 386596803 12706915 3536522..3537454 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_3146 LysR family transcriptional regulator; LysR family transcriptional regulator 3537454 12706915 EcDH1_3290 Escherichia coli DH1 LysR family transcriptional regulator YP_006093203.1 3536522 D 536056 CDS YP_006093204.1 386596804 12706916 complement(3537496..3538584) 1 NC_017625.1 PFAM: regulatory protein LuxR; EAL domain protein; KEGG: aha:AHA_3485 EAL domain-containing protein; diguanylate phosphodiesterase 3538584 12706916 EcDH1_3291 Escherichia coli DH1 diguanylate phosphodiesterase YP_006093204.1 3537496 R 536056 CDS YP_006093205.1 386596805 12706917 complement(3539459..3541492) 1 NC_017625.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sfv:SFV_0325 choline transport protein BetT; choline/carnitine/betaine transporter 3541492 12706917 EcDH1_3292 Escherichia coli DH1 choline/carnitine/betaine transporter YP_006093205.1 3539459 R 536056 CDS YP_006093206.1 386596806 12706918 3541621..3542208 1 NC_017625.1 TIGRFAM: transcriptional repressor BetI; PFAM: regulatory protein TetR; KEGG: sfv:SFV_0324 transcriptional regulator BetI; TetR family transcriptional regulator 3542208 12706918 EcDH1_3293 Escherichia coli DH1 TetR family transcriptional regulator YP_006093206.1 3541621 D 536056 CDS YP_006093207.1 386596807 12706919 3542222..3543694 1 NC_017625.1 TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: sfv:SFV_0323 betaine aldehyde dehydrogenase; betaine aldehyde dehydrogenase 3543694 12706919 EcDH1_3294 Escherichia coli DH1 betaine aldehyde dehydrogenase YP_006093207.1 3542222 D 536056 CDS YP_006093208.1 386596808 12706920 3543708..3545378 1 NC_017625.1 TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sfv:SFV_0322 choline dehydrogenase; choline dehydrogenase 3545378 12706920 EcDH1_3295 Escherichia coli DH1 choline dehydrogenase YP_006093208.1 3543708 D 536056 CDS YP_006093209.1 386596809 12706921 3545591..3546259 1 NC_017625.1 KEGG: sfv:SFV_0321 hypothetical protein; hypothetical protein 3546259 12706921 EcDH1_3296 Escherichia coli DH1 hypothetical protein YP_006093209.1 3545591 D 536056 CDS YP_006093210.1 386596810 12706922 complement(3546502..3547197) 1 NC_017625.1 PFAM: protein of unknown function DUF162; KEGG: sbc:SbBS512_E0257 hypothetical protein; hypothetical protein 3547197 12706922 EcDH1_3297 Escherichia coli DH1 hypothetical protein YP_006093210.1 3546502 R 536056 CDS YP_006093211.1 386596811 12706923 complement(3547190..3548617) 1 NC_017625.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: sfv:SFV_0318 hypothetical protein; iron-sulfur cluster binding protein 3548617 12706923 EcDH1_3298 Escherichia coli DH1 iron-sulfur cluster binding protein YP_006093211.1 3547190 R 536056 CDS YP_006093212.1 386596812 12706924 complement(3548628..3549347) 1 NC_017625.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sbc:SbBS512_E0259 cysteine-rich domain protein; hypothetical protein 3549347 12706924 EcDH1_3299 Escherichia coli DH1 hypothetical protein YP_006093212.1 3548628 R 536056 CDS YP_006093213.1 386596813 12706925 complement(3549874..3550728) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ssn:SSON_0319 putative AraC-type regulatory protein; AraC family transcriptional regulator 3550728 12706925 EcDH1_3300 Escherichia coli DH1 AraC family transcriptional regulator YP_006093213.1 3549874 R 536056 CDS YP_006093214.1 386596814 12706926 3550954..3552279 1 NC_017625.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ssn:SSON_0320 pyridine nucleotide-disulfide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase dimerization region 3552279 12706926 EcDH1_3301 Escherichia coli DH1 pyridine nucleotide-disulfide oxidoreductase dimerization region YP_006093214.1 3550954 D 536056 CDS YP_006093215.1 386596815 12706927 3552636..3553229 1 NC_017625.1 PFAM: protein of unknown function DUF417; KEGG: ssn:SSON_0322 hypothetical protein; hypothetical protein 3553229 12706927 EcDH1_3302 Escherichia coli DH1 hypothetical protein YP_006093215.1 3552636 D 536056 CDS YP_006093216.1 386596816 12706928 3553819..3554505 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E0268 putative HTH-type transcriptional regulator YkgA; AraC family transcriptional regulator 3554505 12706928 EcDH1_3303 Escherichia coli DH1 AraC family transcriptional regulator YP_006093216.1 3553819 D 536056 CDS YP_006093217.1 386596817 12706929 complement(3554502..3555368) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit 3555368 12706929 EcDH1_3304 Escherichia coli DH1 integrase catalytic subunit YP_006093217.1 3554502 R 536056 CDS YP_006093218.1 386596818 12706930 complement(3555365..3555664) 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein 3555664 12706930 EcDH1_3305 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006093218.1 3555365 R 536056 CDS YP_006093219.1 386596819 12706931 complement(3555711..3556598) 1 NC_017625.1 KEGG: sgl:SG0602 putative invasin; hypothetical protein 3556598 12706931 EcDH1_3306 Escherichia coli DH1 hypothetical protein YP_006093219.1 3555711 R 536056 CDS YP_006093220.1 386596820 12706932 3557713..3557814 1 NC_017625.1 hypothetical protein 3557814 12706932 EcDH1_3307 Escherichia coli DH1 hypothetical protein YP_006093220.1 3557713 D 536056 CDS YP_006093221.1 386596821 12706933 3558175..3558441 1 NC_017625.1 PFAM: ribosomal protein L31; KEGG: sbo:SBO_0223 50S ribosomal protein L31 type B; 50S ribosomal protein L31 3558441 12706933 EcDH1_3308 Escherichia coli DH1 50S ribosomal protein L31 YP_006093221.1 3558175 D 536056 CDS YP_006093222.1 386596822 12706934 3558441..3558581 1 NC_017625.1 PFAM: ribosomal protein L36; KEGG: cko:CKO_02695 hypothetical protein; 50S ribosomal protein L36 3558581 12706934 EcDH1_3309 Escherichia coli DH1 50S ribosomal protein L36 YP_006093222.1 3558441 D 536056 CDS YP_006093223.1 386596823 12706935 3559667..3560209 1 NC_017625.1 PFAM: regulatory protein LuxR; KEGG: sbo:SBO_0225 putative regulator; LuxR family transcriptional regulator 3560209 12706935 EcDH1_3310 Escherichia coli DH1 LuxR family transcriptional regulator YP_006093223.1 3559667 D 536056 CDS YP_006093224.1 386596824 12706936 3560284..3560871 1 NC_017625.1 KEGG: sbo:SBO_0226 hypothetical protein; hypothetical protein 3560871 12706936 EcDH1_3311 Escherichia coli DH1 hypothetical protein YP_006093224.1 3560284 D 536056 CDS YP_006093225.1 386596825 12706937 3560929..3561597 1 NC_017625.1 KEGG: sbo:SBO_0227 hypothetical protein; hypothetical protein 3561597 12706937 EcDH1_3312 Escherichia coli DH1 hypothetical protein YP_006093225.1 3560929 D 536056 CDS YP_006093226.1 386596826 12706938 3561623..3564148 1 NC_017625.1 KEGG: kpe:KPK_4397 hypothetical protein; hypothetical protein 3564148 12706938 EcDH1_3313 Escherichia coli DH1 hypothetical protein YP_006093226.1 3561623 D 536056 CDS YP_006093227.1 386596827 12706939 3564138..3565781 1 NC_017625.1 KEGG: kpn:KPN_00294 putative receptor; putative receptor 3565781 12706939 EcDH1_3314 Escherichia coli DH1 putative receptor YP_006093227.1 3564138 D 536056 CDS YP_006093228.1 386596828 12706940 3565804..3566460 1 NC_017625.1 KEGG: kpe:KPK_4395 hypothetical protein; hypothetical protein 3566460 12706940 EcDH1_3315 Escherichia coli DH1 hypothetical protein YP_006093228.1 3565804 D 536056 CDS YP_006093229.1 386596829 12706941 3566773..3567102 1 NC_017625.1 PFAM: protein of unknown function UPF0153; KEGG: esa:ESA_01555 hypothetical protein; hypothetical protein 3567102 12706941 EcDH1_3316 Escherichia coli DH1 hypothetical protein YP_006093229.1 3566773 D 536056 CDS YP_006093230.1 386596830 12706942 complement(3567350..3567964) 1 NC_017625.1 PFAM: protein of unknown function DUF1440; KEGG: ent:Ent638_2282 hypothetical protein; hypothetical protein 3567964 12706942 EcDH1_3317 Escherichia coli DH1 hypothetical protein YP_006093230.1 3567350 R 536056 CDS YP_006093231.1 386596831 12706943 3568382..3569071 1 NC_017625.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: esa:ESA_04143 hypothetical protein; (2Fe-2S)-binding domain-containing protein 3569071 12706943 EcDH1_3318 Escherichia coli DH1 (2Fe-2S)-binding domain-containing protein YP_006093231.1 3568382 D 536056 CDS YP_006093232.1 386596832 12706944 3569068..3570024 1 NC_017625.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: esa:ESA_04145 hypothetical protein; molybdopterin dehydrogenase FAD-binding protein 3570024 12706944 EcDH1_3319 Escherichia coli DH1 molybdopterin dehydrogenase FAD-binding protein YP_006093232.1 3569068 D 536056 CDS YP_006093233.1 386596833 12706945 3570021..3572219 1 NC_017625.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: esa:ESA_04146 hypothetical protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3572219 12706945 EcDH1_3320 Escherichia coli DH1 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_006093233.1 3570021 D 536056 CDS YP_006093234.1 386596834 12706946 3572229..3573185 1 NC_017625.1 PFAM: protein of unknown function DUF182; KEGG: esa:ESA_04147 hypothetical protein; hypothetical protein 3573185 12706946 EcDH1_3321 Escherichia coli DH1 hypothetical protein YP_006093234.1 3572229 D 536056 CDS YP_006093235.1 386596835 12706947 3573164..3573574 1 NC_017625.1 KEGG: smd:Smed_5891 transcriptional regulator, LysR family; hypothetical protein 3573574 12706947 EcDH1_3322 Escherichia coli DH1 hypothetical protein YP_006093235.1 3573164 D 536056 CDS YP_006093236.1 386596836 12706949 3573934..3575259 1 NC_017625.1 PFAM: integrase family protein; KEGG: bch:Bcen2424_1326 phage integrase family protein; integrase family protein 3575259 12706949 EcDH1_3323 Escherichia coli DH1 integrase family protein YP_006093236.1 3573934 D 536056 CDS YP_006093237.1 386596837 12706950 3575376..3575816 1 NC_017625.1 hypothetical protein 3575816 12706950 EcDH1_3324 Escherichia coli DH1 hypothetical protein YP_006093237.1 3575376 D 536056 CDS YP_006093238.1 386596838 12706951 3575942..3576922 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 3576922 12706951 EcDH1_3325 Escherichia coli DH1 transposase IS4 family protein YP_006093238.1 3575942 D 536056 CDS YP_006093239.1 386596839 12706952 3577382..3578209 1 NC_017625.1 KEGG: sfl:SF2986 hypothetical protein; hypothetical protein 3578209 12706952 EcDH1_3326 Escherichia coli DH1 hypothetical protein YP_006093239.1 3577382 D 536056 CDS YP_006093240.1 386596840 12706953 3578314..3578934 1 NC_017625.1 KEGG: ppr:PBPRA0888 putative resolvase; hypothetical protein 3578934 12706953 EcDH1_3327 Escherichia coli DH1 hypothetical protein YP_006093240.1 3578314 D 536056 CDS YP_006093241.1 386596841 12706954 3579206..3579832 1 NC_017625.1 KEGG: son:SO_1443 hypothetical protein; hypothetical protein 3579832 12706954 EcDH1_3328 Escherichia coli DH1 hypothetical protein YP_006093241.1 3579206 D 536056 CDS YP_006093242.1 386596842 12706955 complement(3579923..3580654) 1 NC_017625.1 KEGG: slo:Shew_1261 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 3580654 12706955 EcDH1_3329 Escherichia coli DH1 type III restriction enzyme, res subunit YP_006093242.1 3579923 R 536056 CDS YP_006093243.1 386596843 12706958 3581849..3582853 1 NC_017625.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ent:Ent638_0459 ornithine carbamoyltransferase subunit F; ornithine carbamoyltransferase 3582853 12706958 EcDH1_3332 Escherichia coli DH1 ornithine carbamoyltransferase YP_006093243.1 3581849 D 536056 CDS YP_006093244.1 386596844 12706959 3582992..3583750 1 NC_017625.1 PFAM: regulatory protein IclR; Helix-turn-helix Mga DNA-binding trans-acting positive regulator; Transcriptional regulator IclR; KEGG: ent:Ent638_0458 regulatory protein, IclR; IclR family transcriptional regulator 3583750 12706959 EcDH1_3333 Escherichia coli DH1 IclR family transcriptional regulator YP_006093244.1 3582992 D 536056 CDS YP_006093245.1 386596845 12706960 complement(3583755..3585365) 1 NC_017625.1 PFAM: glycoside hydrolase family 43; KEGG: ent:Ent638_0457 alpha-N-arabinofuranosidase; alpha-N-arabinofuranosidase 3585365 12706960 EcDH1_3334 Escherichia coli DH1 alpha-N-arabinofuranosidase YP_006093245.1 3583755 R 536056 CDS YP_006093246.1 386596846 12706961 complement(3585377..3586759) 1 NC_017625.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_0456 putative symporter YagG; sugar (Glycoside-Pentoside-Hexuronide) transporter 3586759 12706961 EcDH1_3335 Escherichia coli DH1 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_006093246.1 3585377 R 536056 CDS YP_006093247.1 386596847 12706962 complement(3586986..3588953) 1 NC_017625.1 KEGG: ent:Ent638_0455 hypothetical protein; TIGRFAM: dehydratase, YjhG/YagF family; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dehydratase, YjhG/YagF family 3588953 12706962 EcDH1_3336 Escherichia coli DH1 dehydratase, YjhG/YagF family YP_006093247.1 3586986 R 536056 CDS YP_006093248.1 386596848 12706963 complement(3588968..3589876) 1 NC_017625.1 PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3589876 12706963 EcDH1_3337 Escherichia coli DH1 dihydrodipicolinate synthetase YP_006093248.1 3588968 R 536056 CDS YP_006093249.1 386596849 12706964 3590183..3591325 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: bra:BRADO5530 putative transposase; integrase catalytic subunit 3591325 12706964 EcDH1_3338 Escherichia coli DH1 integrase catalytic subunit YP_006093249.1 3590183 D 536056 CDS YP_006093250.1 386596850 12706965 3591419..3591769 1 NC_017625.1 PFAM: YagBYeeUYfjZ family protein; KEGG: spe:Spro_1771 hypothetical protein; YagBYeeUYfjZ family protein 3591769 12706965 EcDH1_3339 Escherichia coli DH1 YagBYeeUYfjZ family protein YP_006093250.1 3591419 D 536056 CDS YP_006093251.1 386596851 12706966 3591792..3592130 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_4359 ISEhe3 orfA; transposase IS3/IS911 family protein 3592130 12706966 EcDH1_3340 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006093251.1 3591792 D 536056 CDS YP_006093252.1 386596852 12706969 3593352..3594398 1 NC_017625.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cko:CKO_02821 ferric transporter ATP-binding subunit; ABC transporter 3594398 12706969 EcDH1_3343 Escherichia coli DH1 ABC transporter YP_006093252.1 3593352 D 536056 CDS YP_006093253.1 386596853 12706970 complement(3594507..3595439) 1 NC_017625.1 PFAM: homocysteine S-methyltransferase; KEGG: cko:CKO_02822 homocysteine methyltransferase; homocysteine S-methyltransferase 3595439 12706970 EcDH1_3344 Escherichia coli DH1 homocysteine S-methyltransferase YP_006093253.1 3594507 R 536056 CDS YP_006093254.1 386596854 12706971 complement(3595426..3596853) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: ent:Ent638_0827 S-methylmethionine transporter; amino acid permease 3596853 12706971 EcDH1_3345 Escherichia coli DH1 amino acid permease YP_006093254.1 3595426 R 536056 CDS YP_006093255.1 386596855 12706972 3597073..3598053 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 3598053 12706972 EcDH1_3346 Escherichia coli DH1 transposase IS4 family protein YP_006093255.1 3597073 D 536056 CDS YP_006093256.1 386596856 12706973 complement(3598162..3599307) 1 NC_017625.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: sfl:SF2976 reverse transcriptase-like protein; RNA-directed DNA polymerase 3599307 12706973 EcDH1_3347 Escherichia coli DH1 RNA-directed DNA polymerase YP_006093256.1 3598162 R 536056 CDS YP_006093257.1 386596857 12706974 complement(3599331..3599453) 1 NC_017625.1 KEGG: ypg:YpAngola_0117 hypothetical protein; hypothetical protein 3599453 12706974 EcDH1_3348 Escherichia coli DH1 hypothetical protein YP_006093257.1 3599331 R 536056 CDS YP_006093258.1 386596858 12706975 complement(3599899..3600324) 1 NC_017625.1 KEGG: sfx:S0235 IS911 orfA; IS911 orfA 3600324 12706975 EcDH1_3349 Escherichia coli DH1 IS911 orfA YP_006093258.1 3599899 R 536056 CDS YP_006093259.1 386596859 12706976 complement(3600400..3601551) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: bac:BamMC406_6641 integrase catalytic region; integrase catalytic subunit 3601551 12706976 EcDH1_3350 Escherichia coli DH1 integrase catalytic subunit YP_006093259.1 3600400 R 536056 CDS YP_006093260.1 386596860 12706977 complement(3601508..3601876) 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: eta:ETA_pET460330 IS911 transposase; transposase IS3/IS911 family protein 3601876 12706977 EcDH1_3351 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006093260.1 3601508 R 536056 CDS YP_006093261.1 386596861 12706978 3601972..3602865 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppw:PputW619_2615 LysR family transcriptional regulator; LysR family transcriptional regulator 3602865 12706978 EcDH1_3352 Escherichia coli DH1 LysR family transcriptional regulator YP_006093261.1 3601972 D 536056 CDS YP_006093262.1 386596862 12706979 3603194..3604057 1 NC_017625.1 PFAM: GTP-binding protein HSR1-related; KEGG: kpe:KPK_4950 GTPase family protein; GTP-binding protein HSR1-like protein 3604057 12706979 EcDH1_3353 Escherichia coli DH1 GTP-binding protein HSR1-like protein YP_006093262.1 3603194 D 536056 CDS YP_006093263.1 386596863 12706980 3604149..3604970 1 NC_017625.1 PFAM: protein of unknown function DUF932; KEGG: ypy:YPK_3134 hypothetical protein; hypothetical protein 3604970 12706980 EcDH1_3354 Escherichia coli DH1 hypothetical protein YP_006093263.1 3604149 D 536056 CDS YP_006093264.1 386596864 12706981 3605187..3606044 1 NC_017625.1 KEGG: seg:SG0280 hypothetical protein; transcriptional regulator protein-like protein 3606044 12706981 EcDH1_3355 Escherichia coli DH1 transcriptional regulator protein-like protein YP_006093264.1 3605187 D 536056 CDS YP_006093265.1 386596865 12706982 3606067..3606534 1 NC_017625.1 KEGG: kpe:KPK_4947 hypothetical protein; hypothetical protein 3606534 12706982 EcDH1_3356 Escherichia coli DH1 hypothetical protein YP_006093265.1 3606067 D 536056 CDS YP_006093266.1 386596866 12706983 3606611..3606850 1 NC_017625.1 PFAM: protein of unknown function DUF905; KEGG: kpn:KPN_pKPN3p05984 hypothetical protein; hypothetical protein 3606850 12706983 EcDH1_3357 Escherichia coli DH1 hypothetical protein YP_006093266.1 3606611 D 536056 CDS YP_006093267.1 386596867 12706984 3606948..3607406 1 NC_017625.1 PFAM: Antirestriction protein; KEGG: seh:SeHA_C4681 antirestriction protein; antirestriction protein 3607406 12706984 EcDH1_3358 Escherichia coli DH1 antirestriction protein YP_006093267.1 3606948 D 536056 CDS YP_006093268.1 386596868 12706985 3607422..3607898 1 NC_017625.1 PFAM: DNA repair protein RadC; KEGG: sdy:SDY_4590 putative DNA repair protein; DNA repair protein RadC 3607898 12706985 EcDH1_3359 Escherichia coli DH1 DNA repair protein RadC YP_006093268.1 3607422 D 536056 CDS YP_006093269.1 386596869 12706986 3607907..3608128 1 NC_017625.1 PFAM: protein of unknown function DUF987; KEGG: seg:SG0269 hypothetical protein; hypothetical protein 3608128 12706986 EcDH1_3360 Escherichia coli DH1 hypothetical protein YP_006093269.1 3607907 D 536056 CDS YP_006093270.1 386596870 12706987 3608147..3608464 1 NC_017625.1 PFAM: YagBYeeUYfjZ family protein; KEGG: plu:plu0134 hypothetical protein; YagBYeeUYfjZ family protein 3608464 12706987 EcDH1_3361 Escherichia coli DH1 YagBYeeUYfjZ family protein YP_006093270.1 3608147 D 536056 CDS YP_006093271.1 386596871 12706988 3608485..3608826 1 NC_017625.1 PFAM: protein of unknown function DUF1219; KEGG: eca:ECA2853 hypothetical protein; hypothetical protein 3608826 12706988 EcDH1_3362 Escherichia coli DH1 hypothetical protein YP_006093271.1 3608485 D 536056 CDS YP_006093272.1 386596872 12706989 3608942..3609046 1 NC_017625.1 hypothetical protein 3609046 12706989 EcDH1_3363 Escherichia coli DH1 hypothetical protein YP_006093272.1 3608942 D 536056 CDS YP_006093273.1 386596873 12706991 complement(3609398..3610651) 1 NC_017625.1 KEGG: ssn:SSON_0285 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase 3610651 12706991 EcDH1_3364 Escherichia coli DH1 gamma-glutamyl phosphate reductase YP_006093273.1 3609398 R 536056 CDS YP_006093274.1 386596874 12706992 complement(3610663..3611766) 1 NC_017625.1 KEGG: sdy:SDY_0474 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; glutamate 5-kinase 3611766 12706992 EcDH1_3365 Escherichia coli DH1 glutamate 5-kinase YP_006093274.1 3610663 R 536056 CDS YP_006093275.1 386596875 12706993 3612054..3613109 1 NC_017625.1 PFAM: porin Gram-negative type; KEGG: ssn:SSON_0283 outer membrane phosphoporin protein E; porin 3613109 12706993 EcDH1_3366 Escherichia coli DH1 porin YP_006093275.1 3612054 D 536056 CDS YP_006093276.1 386596876 12706994 complement(3613148..3613549) 1 NC_017625.1 PFAM: transcriptional regulator Crl; KEGG: sbc:SbBS512_E0237 sigma factor-binding protein Crl; transcriptional regulator Crl 3613549 12706994 EcDH1_3367 Escherichia coli DH1 transcriptional regulator Crl YP_006093276.1 3613148 R 536056 CDS YP_006093277.1 386596877 12706995 complement(3613607..3614851) 1 NC_017625.1 PFAM: protein of unknown function DUF1100 hydrolase family protein; KEGG: sbo:SBO_0245 fermentation/respiration switch protein; hypothetical protein 3614851 12706995 EcDH1_3368 Escherichia coli DH1 hypothetical protein YP_006093277.1 3613607 R 536056 CDS YP_006093278.1 386596878 12706996 complement(3614943..3615401) 1 NC_017625.1 PFAM: phosphoribosyltransferase; KEGG: sdy:SDY_0479 xanthine-guanine phosphoribosyltransferase; xanthine phosphoribosyltransferase 3615401 12706996 EcDH1_3369 Escherichia coli DH1 xanthine phosphoribosyltransferase YP_006093278.1 3614943 R 536056 CDS YP_006093279.1 386596879 12706997 3615662..3617119 1 NC_017625.1 KEGG: sbc:SbBS512_E0234 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3617119 12706997 EcDH1_3370 Escherichia coli DH1 aminoacyl-histidine dipeptidase YP_006093279.1 3615662 D 536056 CDS YP_006093280.1 386596880 12706998 complement(3617176..3617712) 1 NC_017625.1 TIGRFAM: peptide chain release factor H; PFAM: Class I peptide chain release factor; KEGG: sbc:SbBS512_E0233 peptidyl-tRNA hydrolase domain protein; peptide chain release factor H 3617712 12706998 EcDH1_3371 Escherichia coli DH1 peptide chain release factor H YP_006093280.1 3617176 R 536056 CDS YP_006093281.1 386596881 12707000 complement(3618217..3618591) 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_0275 hypothetical protein; N-acetyltransferase GCN5 3618591 12707000 EcDH1_3373 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006093281.1 3618217 R 536056 CDS YP_006093282.1 386596882 12707001 complement(3618679..3619077) 1 NC_017625.1 KEGG: sfv:SFV_0297 putative toxin YafO; putative toxin YafO 3619077 12707001 EcDH1_3374 Escherichia coli DH1 putative toxin YafO YP_006093282.1 3618679 R 536056 CDS YP_006093283.1 386596883 12707002 complement(3619080..3619373) 1 NC_017625.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sfv:SFV_0298 putative antitoxin of the YafO-YafN toxin-antitoxin system; prevent-host-death family protein 3619373 12707002 EcDH1_3375 Escherichia coli DH1 prevent-host-death family protein YP_006093283.1 3619080 R 536056 CDS YP_006093284.1 386596884 12707003 complement(3619425..3620480) 1 NC_017625.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: ssn:SSON_0274 DNA polymerase IV; DNA-directed DNA polymerase 3620480 12707003 EcDH1_3376 Escherichia coli DH1 DNA-directed DNA polymerase YP_006093284.1 3619425 R 536056 CDS YP_006093285.1 386596885 12707004 complement(3620551..3621336) 1 NC_017625.1 PFAM: OmpA/MotB domain protein; KEGG: ssn:SSON_0272 hypothetical protein; OmpA/MotB domain-containing protein 3621336 12707004 EcDH1_3377 Escherichia coli DH1 OmpA/MotB domain-containing protein YP_006093285.1 3620551 R 536056 CDS YP_006093286.1 386596886 12707005 3621281..3623020 1 NC_017625.1 PFAM: type III secretion FHIPEP protein; KEGG: ssn:SSON_0273 flagellar biosynthesis; type III secretion FHIPEP protein 3623020 12707005 EcDH1_3378 Escherichia coli DH1 type III secretion FHIPEP protein YP_006093286.1 3621281 D 536056 CDS YP_006093287.1 386596887 12707006 complement(3623244..3623741) 1 NC_017625.1 KEGG: ssn:SSON_0271 hypothetical protein; hypothetical protein 3623741 12707006 EcDH1_3379 Escherichia coli DH1 hypothetical protein YP_006093287.1 3623244 R 536056 CDS YP_006093288.1 386596888 12707007 complement(3623917..3624621) 1 NC_017625.1 PFAM: NLP/P60 protein; KEGG: ssn:SSON_0269 putative lipoprotein; NLP/P60 protein 3624621 12707007 EcDH1_3380 Escherichia coli DH1 NLP/P60 protein YP_006093288.1 3623917 R 536056 CDS YP_006093289.1 386596889 12707008 3624876..3625136 1 NC_017625.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: ssn:SSON_0268 damage-inducible protein J; RelB/DinJ family addiction module antitoxin 3625136 12707008 EcDH1_3381 Escherichia coli DH1 RelB/DinJ family addiction module antitoxin YP_006093289.1 3624876 D 536056 CDS YP_006093290.1 386596890 12707009 3625139..3625417 1 NC_017625.1 TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: sdy:SDY_0251 hypothetical protein; RelE/StbE family addiction module toxin 3625417 12707009 EcDH1_3382 Escherichia coli DH1 RelE/StbE family addiction module toxin YP_006093290.1 3625139 D 536056 CDS YP_006093291.1 386596891 12707010 3625573..3626313 1 NC_017625.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_0250 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3626313 12707010 EcDH1_3383 Escherichia coli DH1 ErfK/YbiS/YcfS/YnhG family protein YP_006093291.1 3625573 D 536056 CDS YP_006093292.1 386596892 12707011 complement(3626284..3627051) 1 NC_017625.1 PFAM: glutamine amidotransferase class-II; KEGG: sbc:SbBS512_E0220 glutamine amidotransferase, class II; glutamine amidotransferase 3627051 12707011 EcDH1_3384 Escherichia coli DH1 glutamine amidotransferase YP_006093292.1 3626284 R 536056 CDS YP_006093293.1 386596893 12707012 complement(3627257..3627835) 1 NC_017625.1 TIGRFAM: phosphoheptose isomerase; KEGG: sbc:SbBS512_E0218 phosphoheptose isomerase; phosphoheptose isomerase 3627835 12707012 EcDH1_3385 Escherichia coli DH1 phosphoheptose isomerase YP_006093293.1 3627257 R 536056 CDS YP_006093294.1 386596894 12707013 3628075..3630519 1 NC_017625.1 PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: sbc:SbBS512_E0217 acyl-coenzyme A dehydrogenase; hypothetical protein 3630519 12707013 EcDH1_3386 Escherichia coli DH1 hypothetical protein YP_006093294.1 3628075 D 536056 CDS YP_006093295.1 386596895 12707014 complement(3630562..3631008) 1 NC_017625.1 PFAM: Inhibitor of vertebrate lysozyme; KEGG: sdy:SDY_0246 vertebrate C-lysozyme inhibitor; lysozyme inhibitor 3631008 12707014 EcDH1_3387 Escherichia coli DH1 lysozyme inhibitor YP_006093295.1 3630562 R 536056 CDS YP_006093296.1 386596896 12707015 3631189..3631959 1 NC_017625.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbc:SbBS512_E0215 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3631959 12707015 EcDH1_3388 Escherichia coli DH1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_006093296.1 3631189 D 536056 CDS YP_006093297.1 386596897 12707018 3632642..3633121 1 NC_017625.1 KEGG: sea:SeAg_B1092 hypothetical protein; hypothetical protein 3633121 12707018 EcDH1_3391 Escherichia coli DH1 hypothetical protein YP_006093297.1 3632642 D 536056 CDS YP_006093298.1 386596898 12707019 complement(3633258..3634043) 1 NC_017625.1 KEGG: ssn:SSON_0231 putative aminopeptidase; putative aminopeptidase 3634043 12707019 EcDH1_3392 Escherichia coli DH1 putative aminopeptidase YP_006093298.1 3633258 R 536056 CDS YP_006093299.1 386596899 12707021 complement(3634580..3635320) 1 NC_017625.1 KEGG: sfv:SFV_0198 DNA polymerase III subunit epsilon; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 3635320 12707021 EcDH1_3393 Escherichia coli DH1 DNA polymerase III subunit epsilon YP_006093299.1 3634580 R 536056 CDS YP_006093300.1 386596900 12707022 3635376..3635843 1 NC_017625.1 PFAM: ribonuclease H; KEGG: sdy:SDY_0233 ribonuclease H; Ribonuclease H 3635843 12707022 EcDH1_3394 Escherichia coli DH1 Ribonuclease H YP_006093300.1 3635376 D 536056 CDS YP_006093301.1 386596901 12707023 complement(3635840..3636562) 1 NC_017625.1 PFAM: Methyltransferase type 11; KEGG: sbo:SBO_0202 hypothetical protein; type 11 methyltransferase 3636562 12707023 EcDH1_3395 Escherichia coli DH1 type 11 methyltransferase YP_006093301.1 3635840 R 536056 CDS YP_006093302.1 386596902 12707024 3636596..3637351 1 NC_017625.1 KEGG: sbc:SbBS512_E0208 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 3637351 12707024 EcDH1_3396 Escherichia coli DH1 hydroxyacylglutathione hydrolase YP_006093302.1 3636596 D 536056 CDS YP_006093303.1 386596903 12707026 complement(3638829..3639452) 1 NC_017625.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbc:SbBS512_E0206 methyltransferase, UbiE/COQ5 family; type 11 methyltransferase 3639452 12707026 EcDH1_3398 Escherichia coli DH1 type 11 methyltransferase YP_006093303.1 3638829 R 536056 CDS YP_006093304.1 386596904 12707027 complement(3639456..3640235) 1 NC_017625.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sbc:SbBS512_E0205 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase 3640235 12707027 EcDH1_3399 Escherichia coli DH1 endonuclease/exonuclease/phosphatase YP_006093304.1 3639456 R 536056 CDS YP_006093305.1 386596905 12707028 3640497..3641411 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_0222 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 3641411 12707028 EcDH1_3400 Escherichia coli DH1 LysR family transcriptional regulator YP_006093305.1 3640497 D 536056 CDS YP_006093306.1 386596906 12707029 complement(3641408..3642211) 1 NC_017625.1 PFAM: aldo/keto reductase; KEGG: ssn:SSON_0221 2,5-diketo-D-gluconate reductase B; aldo/keto reductase 3642211 12707029 EcDH1_3401 Escherichia coli DH1 aldo/keto reductase YP_006093306.1 3641408 R 536056 CDS YP_006093307.1 386596907 12707036 complement(3647970..3648545) 1 NC_017625.1 TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: ssn:SSON_0214 D,D-heptose 1,7-bisphosphate phosphatase; D,D-heptose 1,7-bisphosphate phosphatase 3648545 12707036 EcDH1_3402 Escherichia coli DH1 D,D-heptose 1,7-bisphosphate phosphatase YP_006093307.1 3647970 R 536056 CDS YP_006093308.1 386596908 12707037 3648733..3649764 1 NC_017625.1 KEGG: sbc:SbBS512_E0193 D-methionine ABC transporter, ATP-binding protein; TIGRFAM: D-methionine ABC transporter, ATPase subunit; PFAM: ABC transporter related; ABC transporter, conserved site; SMART: AAA ATPase; D-methionine ABC transporter ATPase 3649764 12707037 EcDH1_3403 Escherichia coli DH1 D-methionine ABC transporter ATPase YP_006093308.1 3648733 D 536056 CDS YP_006093309.1 386596909 12707038 3649757..3650410 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_0187 DL-methionine transporter permease subunit; binding-protein-dependent transport system inner membrane protein 3650410 12707038 EcDH1_3404 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006093309.1 3649757 D 536056 CDS YP_006093310.1 386596910 12707039 3650450..3651265 1 NC_017625.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: sbc:SbBS512_E0191 D-methionine ABC transporter, periplasmic D-methionine-binding lipoprotein; lipoprotein 3651265 12707039 EcDH1_3405 Escherichia coli DH1 lipoprotein YP_006093310.1 3650450 D 536056 CDS YP_006093311.1 386596911 12707040 3651383..3651787 1 NC_017625.1 KEGG: sdy:SDY_0215 outer membrane lipoprotein; outer membrane lipoprotein 3651787 12707040 EcDH1_3406 Escherichia coli DH1 outer membrane lipoprotein YP_006093311.1 3651383 D 536056 CDS YP_006093312.1 386596912 12707041 3651784..3652491 1 NC_017625.1 PFAM: protein of unknown function UPF0066; KEGG: ssn:SSON_0209 hypothetical protein; hypothetical protein 3652491 12707041 EcDH1_3407 Escherichia coli DH1 hypothetical protein YP_006093312.1 3651784 D 536056 CDS YP_006093313.1 386596913 12707042 3652603..3654321 1 NC_017625.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: sbc:SbBS512_E0188 prolyl-tRNA synthetase; prolyl-tRNA synthetase 3654321 12707042 EcDH1_3408 Escherichia coli DH1 prolyl-tRNA synthetase YP_006093313.1 3652603 D 536056 CDS YP_006093314.1 386596914 12707043 3654375..3655199 1 NC_017625.1 KEGG: sbc:SbBS512_E0187 putative lipoprotein; putative lipoprotein 3655199 12707043 EcDH1_3409 Escherichia coli DH1 putative lipoprotein YP_006093314.1 3654375 D 536056 CDS YP_006093315.1 386596915 12707044 complement(3655399..3656109) 1 NC_017625.1 PFAM: copper resistance lipoprotein NlpE; KEGG: ssn:SSON_0206 lipoprotein involved with copper homeostasis and adhesion; copper resistance lipoprotein NlpE 3656109 12707044 EcDH1_3410 Escherichia coli DH1 copper resistance lipoprotein NlpE YP_006093315.1 3655399 R 536056 CDS YP_006093316.1 386596916 12707045 complement(3656123..3656545) 1 NC_017625.1 PFAM: Class I peptide chain release factor; KEGG: sbc:SbBS512_E0185 peptidyl-tRNA hydrolase domain protein; class I peptide chain release factor 3656545 12707045 EcDH1_3411 Escherichia coli DH1 class I peptide chain release factor YP_006093316.1 3656123 R 536056 CDS YP_006093317.1 386596917 12707046 complement(3656542..3657087) 1 NC_017625.1 PFAM: YaeQ family protein; KEGG: sbc:SbBS512_E0184 hypothetical protein; YaeQ family protein 3657087 12707046 EcDH1_3412 Escherichia coli DH1 YaeQ family protein YP_006093317.1 3656542 R 536056 CDS YP_006093318.1 386596918 12707047 3657253..3657453 1 NC_017625.1 PFAM: protein of unknown function UPF0253; KEGG: sdy:SDY_0208 hypothetical protein; hypothetical protein 3657453 12707047 EcDH1_3413 Escherichia coli DH1 hypothetical protein YP_006093318.1 3657253 D 536056 CDS YP_006093319.1 386596919 12707048 3657440..3657700 1 NC_017625.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: sdy:SDY_0207 Rho-binding antiterminator; transcriptional antiterminator Rof 3657700 12707048 EcDH1_3414 Escherichia coli DH1 transcriptional antiterminator Rof YP_006093319.1 3657440 D 536056 CDS YP_006093320.1 386596920 12707049 complement(3657749..3659047) 1 NC_017625.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: sbc:SbBS512_E0181 tRNA(Ile)-lysidine synthase; tRNA(Ile)-lysidine synthetase 3659047 12707049 EcDH1_3415 Escherichia coli DH1 tRNA(Ile)-lysidine synthetase YP_006093320.1 3657749 R 536056 CDS YP_006093321.1 386596921 12707050 complement(3659112..3659501) 1 NC_017625.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sbc:SbBS512_E0180 glyoxylase family protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3659501 12707050 EcDH1_3416 Escherichia coli DH1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_006093321.1 3659112 R 536056 CDS YP_006093322.1 386596922 12707051 complement(3659558..3661699) 1 NC_017625.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ssn:SSON_0199 lysine decarboxylase 2, constitutive; lysine decarboxylase 3661699 12707051 EcDH1_3417 Escherichia coli DH1 lysine decarboxylase YP_006093322.1 3659558 R 536056 CDS YP_006093323.1 386596923 12707052 complement(3661798..3662757) 1 NC_017625.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: sdy:SDY_0201 acetyl-CoA carboxylase carboxyltransferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 3662757 12707052 EcDH1_3418 Escherichia coli DH1 acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_006093323.1 3661798 R 536056 CDS YP_006093324.1 386596924 12707053 complement(3662770..3666252) 1 NC_017625.1 KEGG: ssn:SSON_0196 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 3666252 12707053 EcDH1_3419 Escherichia coli DH1 DNA polymerase III subunit alpha YP_006093324.1 3662770 R 536056 CDS YP_006093325.1 386596925 12707054 complement(3666289..3666885) 1 NC_017625.1 PFAM: ribonuclease HII/HIII; KEGG: ssn:SSON_0195 ribonuclease HII; Ribonuclease H 3666885 12707054 EcDH1_3420 Escherichia coli DH1 Ribonuclease H YP_006093325.1 3666289 R 536056 CDS YP_006093326.1 386596926 12707055 complement(3666882..3668030) 1 NC_017625.1 KEGG: ssn:SSON_0194 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 3668030 12707055 EcDH1_3421 Escherichia coli DH1 lipid-A-disaccharide synthase YP_006093326.1 3666882 R 536056 CDS YP_006093327.1 386596927 12707056 complement(3668030..3668818) 1 NC_017625.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: sdy:SDY_0197 UDP-N-acetylglucosamine acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 3668818 12707056 EcDH1_3422 Escherichia coli DH1 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase YP_006093327.1 3668030 R 536056 CDS YP_006093328.1 386596928 12707058 complement(3669381..3670406) 1 NC_017625.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: sdy:SDY_0195 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 3670406 12707058 EcDH1_3424 Escherichia coli DH1 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_006093328.1 3669381 R 536056 CDS YP_006093329.1 386596929 12707059 complement(3670410..3670895) 1 NC_017625.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: sdy:SDY_0194 periplasmic chaperone; outer membrane chaperone Skp 3670895 12707059 EcDH1_3425 Escherichia coli DH1 outer membrane chaperone Skp YP_006093329.1 3670410 R 536056 CDS YP_006093330.1 386596930 12707060 complement(3671017..3673449) 1 NC_017625.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: sbc:SbBS512_E0170 outer membrane protein assembly complex, YaeT protein; outer membrane protein assembly complex, YaeT protein 3673449 12707060 EcDH1_3426 Escherichia coli DH1 outer membrane protein assembly complex, YaeT protein YP_006093330.1 3671017 R 536056 CDS YP_006093331.1 386596931 12707061 complement(3673479..3674831) 1 NC_017625.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: sfv:SFV_0159 zinc metallopeptidase; membrane-associated zinc metalloprotease 3674831 12707061 EcDH1_3427 Escherichia coli DH1 membrane-associated zinc metalloprotease YP_006093331.1 3673479 R 536056 CDS YP_006093332.1 386596932 12707062 complement(3674843..3675700) 1 NC_017625.1 PFAM: phosphatidate cytidylyltransferase; KEGG: sbc:SbBS512_E0168 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3675700 12707062 EcDH1_3428 Escherichia coli DH1 phosphatidate cytidylyltransferase YP_006093332.1 3674843 R 536056 CDS YP_006093333.1 386596933 12707063 complement(3675713..3676471) 1 NC_017625.1 KEGG: sdy:SDY_0190 undecaprenyl pyrophosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3676471 12707063 EcDH1_3429 Escherichia coli DH1 undecaprenyl diphosphate synthase YP_006093333.1 3675713 R 536056 CDS YP_006093334.1 386596934 12707064 complement(3676660..3677856) 1 NC_017625.1 KEGG: sbc:SbBS512_E0166 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3677856 12707064 EcDH1_3430 Escherichia coli DH1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_006093334.1 3676660 R 536056 CDS YP_006093335.1 386596935 12707065 complement(3677948..3678505) 1 NC_017625.1 PFAM: ribosome recycling factor; KEGG: sdy:SDY_0188 ribosome recycling factor; ribosome recycling factor 3678505 12707065 EcDH1_3431 Escherichia coli DH1 ribosome recycling factor YP_006093335.1 3677948 R 536056 CDS YP_006093336.1 386596936 12707066 complement(3678797..3679522) 1 NC_017625.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: sbc:SbBS512_E0164 UMP kinase; uridylate kinase 3679522 12707066 EcDH1_3432 Escherichia coli DH1 uridylate kinase YP_006093336.1 3678797 R 536056 CDS YP_006093337.1 386596937 12707067 complement(3679669..3680520) 1 NC_017625.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: sdy:SDY_0186 elongation factor Ts; translation elongation factor Ts 3680520 12707067 EcDH1_3433 Escherichia coli DH1 translation elongation factor Ts YP_006093337.1 3679669 R 536056 CDS YP_006093338.1 386596938 12707068 complement(3680778..3681503) 1 NC_017625.1 PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal protein S2; 30S ribosomal protein S2 3681503 12707068 EcDH1_3434 Escherichia coli DH1 30S ribosomal protein S2 YP_006093338.1 3680778 R 536056 CDS YP_006093339.1 386596939 12707069 3681871..3682665 1 NC_017625.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sdy:SDY_0184 methionine aminopeptidase; methionine aminopeptidase 3682665 12707069 EcDH1_3435 Escherichia coli DH1 methionine aminopeptidase YP_006093339.1 3681871 D 536056 CDS YP_006093340.1 386596940 12707070 3682727..3685399 1 NC_017625.1 KEGG: sbc:SbBS512_E0159 protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase beta domain protein region; protein of unknown function DUF294 nucleotidyltransferase putative; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD 3685399 12707070 EcDH1_3436 Escherichia coli DH1 UTP-GlnB uridylyltransferase, GlnD YP_006093340.1 3682727 D 536056 CDS YP_006093341.1 386596941 12707071 3685430..3686254 1 NC_017625.1 KEGG: ssn:SSON_0178 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3686254 12707071 EcDH1_3437 Escherichia coli DH1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_006093341.1 3685430 D 536056 CDS YP_006093342.1 386596942 12707072 3686308..3687120 1 NC_017625.1 PFAM: metallophosphoesterase; KEGG: sbo:SBO_0153 phosphodiesterase YaeI; metallophosphoesterase 3687120 12707072 EcDH1_3438 Escherichia coli DH1 metallophosphoesterase YP_006093342.1 3686308 D 536056 CDS YP_006093343.1 386596943 12707073 3687282..3687668 1 NC_017625.1 KEGG: sdy:SDY_0181 putative structural protein; putative structural protein 3687668 12707073 EcDH1_3439 Escherichia coli DH1 putative structural protein YP_006093343.1 3687282 D 536056 CDS YP_006093344.1 386596944 12707074 complement(3687757..3688914) 1 NC_017625.1 PFAM: sugar diacid recognition domain protein; KEGG: ssn:SSON_0175 carbohydrate diacid transcriptional activator CdaR; transcriptional regulator CdaR 3688914 12707074 EcDH1_3440 Escherichia coli DH1 transcriptional regulator CdaR YP_006093344.1 3687757 R 536056 CDS YP_006093345.1 386596945 12707075 complement(3689069..3690493) 1 NC_017625.1 KEGG: sbc:SbBS512_E0154 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 3690493 12707075 EcDH1_3441 Escherichia coli DH1 protease Do YP_006093345.1 3689069 R 536056 CDS YP_006093346.1 386596946 12707076 complement(3690623..3692140) 1 NC_017625.1 KEGG: sfv:SFV_0145 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 3692140 12707076 EcDH1_3442 Escherichia coli DH1 deoxyguanosinetriphosphate triphosphohydrolase YP_006093346.1 3690623 R 536056 CDS YP_006093347.1 386596947 12707077 3692224..3692922 1 NC_017625.1 PFAM: purine or other phosphorylase family 1; KEGG: sdy:SDY_0175 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Adenosylhomocysteine nucleosidase 3692922 12707077 EcDH1_3443 Escherichia coli DH1 Adenosylhomocysteine nucleosidase YP_006093347.1 3692224 D 536056 CDS YP_006093348.1 386596948 12707078 3692915..3693715 1 NC_017625.1 PFAM: periplasmic binding protein; KEGG: ssn:SSON_0170 vitamin B12-transporter protein BtuF; periplasmic binding protein 3693715 12707078 EcDH1_3444 Escherichia coli DH1 periplasmic binding protein YP_006093348.1 3692915 D 536056 CDS YP_006093349.1 386596949 12707079 3693753..3694376 1 NC_017625.1 PFAM: protein of unknown function UPF0126; KEGG: sbc:SbBS512_E0149 hypothetical protein; hypothetical protein 3694376 12707079 EcDH1_3445 Escherichia coli DH1 hypothetical protein YP_006093349.1 3693753 D 536056 CDS YP_006093350.1 386596950 12707080 complement(3694423..3694767) 1 NC_017625.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sdy:SDY_0172 hypothetical protein; iron-sulfur cluster assembly accessory protein 3694767 12707080 EcDH1_3446 Escherichia coli DH1 iron-sulfur cluster assembly accessory protein YP_006093350.1 3694423 R 536056 CDS YP_006093351.1 386596951 12707081 complement(3694849..3696270) 1 NC_017625.1 PFAM: Chloride channel core; KEGG: ssn:SSON_0167 chloride channel protein; chloride channel protein 3696270 12707081 EcDH1_3447 Escherichia coli DH1 chloride channel protein YP_006093351.1 3694849 R 536056 CDS YP_006093352.1 386596952 12707082 3696495..3697775 1 NC_017625.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: ssn:SSON_0166 glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde-2,1-aminomutase 3697775 12707082 EcDH1_3448 Escherichia coli DH1 glutamate-1-semialdehyde-2,1-aminomutase YP_006093352.1 3696495 D 536056 CDS YP_006093353.1 386596953 12707083 complement(3697933..3699915) 1 NC_017625.1 PFAM: transport system permease protein; KEGG: sfv:SFV_0138 iron-hydroxamate transporter permease subunit; transport system permease 3699915 12707083 EcDH1_3449 Escherichia coli DH1 transport system permease YP_006093353.1 3697933 R 536056 CDS YP_006093354.1 386596954 12707084 complement(3699912..3700802) 1 NC_017625.1 PFAM: periplasmic binding protein; KEGG: sbc:SbBS512_E0144 ferrichrome-binding periplasmic protein FhuD; periplasmic binding protein 3700802 12707084 EcDH1_3450 Escherichia coli DH1 periplasmic binding protein YP_006093354.1 3699912 R 536056 CDS YP_006093355.1 386596955 12707085 complement(3700802..3701599) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0167 iron-hydroxamate transporter ATP-binding subunit; ABC transporter 3701599 12707085 EcDH1_3451 Escherichia coli DH1 ABC transporter YP_006093355.1 3700802 R 536056 CDS YP_006093356.1 386596956 12707086 complement(3701650..3703893) 1 NC_017625.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfx:S0145 ferrichrome outer membrane transporter; TonB-dependent siderophore receptor 3703893 12707086 EcDH1_3452 Escherichia coli DH1 TonB-dependent siderophore receptor YP_006093356.1 3701650 R 536056 CDS YP_006093357.1 386596957 12707087 complement(3704113..3706647) 1 NC_017625.1 KEGG: sfv:SFV_0134 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 3706647 12707087 EcDH1_3453 Escherichia coli DH1 penicillin-binding protein 1B YP_006093357.1 3704113 R 536056 CDS YP_006093358.1 386596958 12707088 complement(3706843..3709317) 1 NC_017625.1 KEGG: sbo:SBO_0137 ATP-dependent RNA helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 3709317 12707088 EcDH1_3454 Escherichia coli DH1 ATP-dependent helicase HrpB YP_006093358.1 3706843 R 536056 CDS YP_006093359.1 386596959 12707089 3709346..3709876 1 NC_017625.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: ssn:SSON_0159 hypothetical protein; 2'-5' RNA ligase 3709876 12707089 EcDH1_3455 Escherichia coli DH1 2'-5' RNA ligase YP_006093359.1 3709346 D 536056 CDS YP_006093360.1 386596960 12707090 3709891..3710595 1 NC_017625.1 PFAM: sugar fermentation stimulation protein; KEGG: sfx:S0141 sugar fermentation stimulation protein A; sugar fermentation stimulation protein 3710595 12707090 EcDH1_3456 Escherichia coli DH1 sugar fermentation stimulation protein YP_006093360.1 3709891 D 536056 CDS YP_006093361.1 386596961 12707091 3710773..3711228 1 NC_017625.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: esa:ESA_03195 DnaK transcriptional regulator DksA; TraR/DksA family transcriptional regulator 3711228 12707091 EcDH1_3457 Escherichia coli DH1 TraR/DksA family transcriptional regulator YP_006093361.1 3710773 D 536056 CDS YP_006093362.1 386596962 12707092 3711265..3712191 1 NC_017625.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sbc:SbBS512_E0135 glutamyl-Q tRNA(Asp) synthetase; Glutamate--tRNA ligase 3712191 12707092 EcDH1_3458 Escherichia coli DH1 Glutamate--tRNA ligase YP_006093362.1 3711265 D 536056 CDS YP_006093363.1 386596963 12707093 3712284..3713648 1 NC_017625.1 KEGG: sbo:SBO_0132 poly(A) polymerase I; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 3713648 12707093 EcDH1_3459 Escherichia coli DH1 poly(A) polymerase YP_006093363.1 3712284 D 536056 CDS YP_006093364.1 386596964 12707094 3713645..3714124 1 NC_017625.1 KEGG: ssn:SSON_0154 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3714124 12707094 EcDH1_3460 Escherichia coli DH1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_006093364.1 3713645 D 536056 CDS YP_006093365.1 386596965 12707095 3714494..3715078 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: ssn:SSON_0153 putative fimbrial-like protein; Fimbrial protein 3715078 12707095 EcDH1_3461 Escherichia coli DH1 Fimbrial protein YP_006093365.1 3714494 D 536056 CDS YP_006093366.1 386596966 12707096 3715176..3715916 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sbo:SBO_0126 putative chaperone protein EcpD; Pili assembly chaperone, N-terminal 3715916 12707096 EcDH1_3462 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006093366.1 3715176 D 536056 CDS YP_006093367.1 386596967 12707097 3715951..3718548 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sew:SeSA_A0207 fimbrial usher protein; fimbrial biogenesis outer membrane usher protein 3718548 12707097 EcDH1_3463 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006093367.1 3715951 D 536056 CDS YP_006093368.1 386596968 12707098 3718565..3719134 1 NC_017625.1 KEGG: spq:SPAB_00229 hypothetical protein; hypothetical protein 3719134 12707098 EcDH1_3464 Escherichia coli DH1 hypothetical protein YP_006093368.1 3718565 D 536056 CDS YP_006093369.1 386596969 12707099 3719146..3719751 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: ssn:SSON_0146 putative fimbrial protein; Fimbrial protein 3719751 12707099 EcDH1_3465 Escherichia coli DH1 Fimbrial protein YP_006093369.1 3719146 D 536056 CDS YP_006093370.1 386596970 12707100 3719778..3720374 1 NC_017625.1 KEGG: ssn:SSON_0145 putative fimbrial protein; putative fimbrial protein 3720374 12707100 EcDH1_3466 Escherichia coli DH1 putative fimbrial protein YP_006093370.1 3719778 D 536056 CDS YP_006093371.1 386596971 12707101 3720424..3721662 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: stt:t0184 putative fimbrial-like adhesin protein; Fimbrial protein 3721662 12707101 EcDH1_3467 Escherichia coli DH1 Fimbrial protein YP_006093371.1 3720424 D 536056 CDS YP_006093372.1 386596972 12707102 3721776..3722570 1 NC_017625.1 KEGG: sbc:SbBS512_E0127 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3722570 12707102 EcDH1_3468 Escherichia coli DH1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_006093372.1 3721776 D 536056 CDS YP_006093373.1 386596973 12707103 3722582..3723433 1 NC_017625.1 KEGG: sfv:SFV_0123 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 3723433 12707103 EcDH1_3469 Escherichia coli DH1 pantoate--beta-alanine ligase YP_006093373.1 3722582 D 536056 CDS YP_006093374.1 386596974 12707104 complement(3723507..3724409) 1 NC_017625.1 PFAM: putative transposase YhgA family protein; KEGG: sfv:SFV_0122 hypothetical protein; putative transposase YhgA family protein 3724409 12707104 EcDH1_3470 Escherichia coli DH1 putative transposase YhgA family protein YP_006093374.1 3723507 R 536056 CDS YP_006093375.1 386596975 12707105 3724683..3725063 1 NC_017625.1 KEGG: sdy:SDY_0041 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 3725063 12707105 EcDH1_3471 Escherichia coli DH1 aspartate 1-decarboxylase YP_006093375.1 3724683 D 536056 CDS YP_006093376.1 386596976 12707106 complement(3725067..3726296) 1 NC_017625.1 PFAM: polysaccharide deacetylase; KEGG: ssn:SSON_0138 hypothetical protein; polysaccharide deacetylase 3726296 12707106 EcDH1_3472 Escherichia coli DH1 polysaccharide deacetylase YP_006093376.1 3725067 R 536056 CDS YP_006093377.1 386596977 12707107 complement(3726360..3726800) 1 NC_017625.1 PFAM: PTS system fructose subfamily IIA component; KEGG: sbc:SbBS512_E0122 PTS system IIA component domain protein; PTS system fructose subfamily transporter subunit IIA 3726800 12707107 EcDH1_3473 Escherichia coli DH1 PTS system fructose subfamily transporter subunit IIA YP_006093377.1 3726360 R 536056 CDS YP_006093378.1 386596978 12707108 complement(3726905..3727675) 1 NC_017625.1 PFAM: ABC-2 type transporter; KEGG: sdy:SDY_0037 hypothetical protein; ABC transporter 3727675 12707108 EcDH1_3474 Escherichia coli DH1 ABC transporter YP_006093378.1 3726905 R 536056 CDS YP_006093379.1 386596979 12707109 complement(3727672..3728598) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0135 putative ATP-binding component of a transport system; ABC transporter 3728598 12707109 EcDH1_3475 Escherichia coli DH1 ABC transporter YP_006093379.1 3727672 R 536056 CDS YP_006093380.1 386596980 12707110 3728707..3729369 1 NC_017625.1 PFAM: carbonic anhydrase; KEGG: ssn:SSON_0134 carbonic anhydrase; carbonate dehydratase 3729369 12707110 EcDH1_3476 Escherichia coli DH1 carbonate dehydratase YP_006093380.1 3728707 D 536056 CDS YP_006093381.1 386596981 12707111 complement(3729410..3729958) 1 NC_017625.1 KEGG: sfv:SFV_0116 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 3729958 12707111 EcDH1_3477 Escherichia coli DH1 hypoxanthine phosphoribosyltransferase YP_006093381.1 3729410 R 536056 CDS YP_006093382.1 386596982 12707112 3730152..3732542 1 NC_017625.1 KEGG: sfv:SFV_0115 glucose dehydrogenase; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; membrane-bound PQQ-dependent dehydrogenase 3732542 12707112 EcDH1_3478 Escherichia coli DH1 membrane-bound PQQ-dependent dehydrogenase YP_006093382.1 3730152 D 536056 CDS YP_006093383.1 386596983 12707113 complement(3732744..3734294) 1 NC_017625.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: sbc:SbBS512_E0116 copper oxidase CueO; multicopper oxidase type 3 3734294 12707113 EcDH1_3479 Escherichia coli DH1 multicopper oxidase type 3 YP_006093383.1 3732744 R 536056 CDS YP_006093384.1 386596984 12707114 3734460..3734807 1 NC_017625.1 KEGG: sdy:SDY_0029 hypothetical protein; hypothetical protein 3734807 12707114 EcDH1_3480 Escherichia coli DH1 hypothetical protein YP_006093384.1 3734460 D 536056 CDS YP_006093385.1 386596985 12707115 3734913..3735779 1 NC_017625.1 TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: sfv:SFV_0112 spermidine synthase; spermidine synthase 3735779 12707115 EcDH1_3481 Escherichia coli DH1 spermidine synthase YP_006093385.1 3734913 D 536056 CDS YP_006093386.1 386596986 12707116 3735795..3736589 1 NC_017625.1 KEGG: sbc:SbBS512_E0113 S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase 3736589 12707116 EcDH1_3482 Escherichia coli DH1 S-adenosylmethionine decarboxylase YP_006093386.1 3735795 D 536056 CDS YP_006093387.1 386596987 12707117 complement(3736627..3736989) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sdy:SDY_0026 hypothetical protein; hypothetical protein 3736989 12707117 EcDH1_3483 Escherichia coli DH1 hypothetical protein YP_006093387.1 3736627 R 536056 CDS YP_006093388.1 386596988 12707118 complement(3737165..3739762) 1 NC_017625.1 TIGRFAM: aconitate hydratase 2; PFAM: aconitate hydratase domain protein; Aconitase B, N-terminal; KEGG: sbo:SBO_0107 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; aconitate hydratase 2 3739762 12707118 EcDH1_3484 Escherichia coli DH1 aconitate hydratase 2 YP_006093388.1 3737165 R 536056 CDS YP_006093389.1 386596989 12707119 3740117..3741970 1 NC_017625.1 KEGG: sbc:SbBS512_E0110 hypothetical protein; hypothetical protein 3741970 12707119 EcDH1_3485 Escherichia coli DH1 hypothetical protein YP_006093389.1 3740117 D 536056 CDS YP_006093390.1 386596990 12707120 complement(3742041..3743465) 1 NC_017625.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sbc:SbBS512_E0109 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 3743465 12707120 EcDH1_3486 Escherichia coli DH1 dihydrolipoamide dehydrogenase YP_006093390.1 3742041 R 536056 CDS YP_006093391.1 386596991 12707121 complement(3743790..3745682) 1 NC_017625.1 KEGG: sbc:SbBS512_E0108 dihydrolipoyllysine-residue acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 3745682 12707121 EcDH1_3487 Escherichia coli DH1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_006093391.1 3743790 R 536056 CDS YP_006093392.1 386596992 12707122 complement(3745697..3748360) 1 NC_017625.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; KEGG: sfx:S0113 pyruvate dehydrogenase subunit E1; 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 3748360 12707122 EcDH1_3488 Escherichia coli DH1 2-oxo-acid dehydrogenase E1 subunit, homodimeric type YP_006093392.1 3745697 R 536056 CDS YP_006093393.1 386596993 12707123 complement(3748521..3749285) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbc:SbBS512_E0106 transcriptional regulator, GntR family; regulatory protein GntR HTH 3749285 12707123 EcDH1_3489 Escherichia coli DH1 regulatory protein GntR HTH YP_006093393.1 3748521 R 536056 CDS YP_006093394.1 386596994 12707124 3749829..3751199 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sfx:S0111 aromatic amino acid transporter; amino acid permease 3751199 12707124 EcDH1_3490 Escherichia coli DH1 amino acid permease YP_006093394.1 3749829 D 536056 CDS YP_006093395.1 386596995 12707125 complement(3751242..3752096) 1 NC_017625.1 KEGG: ssn:SSON_0119 regulatory protein AmpE; signaling modulator of AmpD, AmpE 3752096 12707125 EcDH1_3491 Escherichia coli DH1 signaling modulator of AmpD, AmpE YP_006093395.1 3751242 R 536056 CDS YP_006093396.1 386596996 12707126 complement(3752093..3752644) 1 NC_017625.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sdy:SDY_0140 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 3752644 12707126 EcDH1_3492 Escherichia coli DH1 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_006093396.1 3752093 R 536056 CDS YP_006093397.1 386596997 12707127 3752732..3753625 1 NC_017625.1 KEGG: sbo:SBO_0098 quinolinate phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 3753625 12707127 EcDH1_3493 Escherichia coli DH1 nicotinate-nucleotide pyrophosphorylase YP_006093397.1 3752732 D 536056 CDS YP_006093398.1 386596998 12707128 3753828..3754268 1 NC_017625.1 KEGG: ssn:SSON_0116 putative major pilin subunit; putative major pilin subunit 3754268 12707128 EcDH1_3494 Escherichia coli DH1 putative major pilin subunit YP_006093398.1 3753828 D 536056 CDS YP_006093399.1 386596999 12707129 3754278..3755663 1 NC_017625.1 PFAM: type II secretion system protein E; KEGG: sdy:SDY_0137 hypothetical protein; type II secretion system protein E 3755663 12707129 EcDH1_3495 Escherichia coli DH1 type II secretion system protein E YP_006093399.1 3754278 D 536056 CDS YP_006093400.1 386597000 12707130 3755653..3756855 1 NC_017625.1 PFAM: type II secretion system protein; KEGG: sbc:SbBS512_E0098 type IV pilus assembly protein PilC; type II secretion system protein 3756855 12707130 EcDH1_3496 Escherichia coli DH1 type II secretion system protein YP_006093400.1 3755653 D 536056 CDS YP_006093401.1 386597001 12707131 complement(3756890..3757933) 1 NC_017625.1 Contains selenocysteine; TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: ssn:SSON_0112 guanosine 5'-monophosphate oxidoreductase; guanosine monophosphate reductase 3757933 12707131 EcDH1_3497 Escherichia coli DH1 guanosine monophosphate reductase YP_006093401.1 3756890 R 536056 CDS YP_006093402.1 386597002 12707132 3758158..3758778 1 NC_017625.1 KEGG: sdy:SDY_0133 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 3758778 12707132 EcDH1_3498 Escherichia coli DH1 dephospho-CoA kinase YP_006093402.1 3758158 D 536056 CDS YP_006093403.1 386597003 12707133 3758778..3759521 1 NC_017625.1 PFAM: protein of unknown function DUF1342; KEGG: ssn:SSON_0110 hypothetical protein; hypothetical protein 3759521 12707133 EcDH1_3499 Escherichia coli DH1 hypothetical protein YP_006093403.1 3758778 D 536056 CDS YP_006093404.1 386597004 12707134 3759531..3759728 1 NC_017625.1 PFAM: protein of unknown function DUF329; KEGG: sdy:SDY_0131 zinc-binding protein; hypothetical protein 3759728 12707134 EcDH1_3500 Escherichia coli DH1 hypothetical protein YP_006093404.1 3759531 D 536056 CDS YP_006093405.1 386597005 12707135 complement(3759944..3760333) 1 NC_017625.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: ssn:SSON_0107 nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP; mutator MutT protein 3760333 12707135 EcDH1_3501 Escherichia coli DH1 mutator MutT protein YP_006093405.1 3759944 R 536056 CDS YP_006093406.1 386597006 12707136 complement(3760393..3763098) 1 NC_017625.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: sbc:SbBS512_E0092 preprotein translocase, SecA subunit; Preprotein translocase subunit SecA 3763098 12707136 EcDH1_3502 Escherichia coli DH1 Preprotein translocase subunit SecA YP_006093406.1 3760393 R 536056 CDS YP_006093407.1 386597007 12707137 complement(3763160..3763747) 1 NC_017625.1 PFAM: secretion monitor family proten; KEGG: sfv:SFV_0090 SecA regulator SecM; secretion monitor family proten 3763747 12707137 EcDH1_3503 Escherichia coli DH1 secretion monitor family proten YP_006093407.1 3763160 R 536056 CDS YP_006093408.1 386597008 12707138 complement(3763903..3764820) 1 NC_017625.1 PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: sdy:SDY_0126 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 3764820 12707138 EcDH1_3504 Escherichia coli DH1 UDP-3-0-acyl N-acetylglucosamine deacetylase YP_006093408.1 3763903 R 536056 CDS YP_006093409.1 386597009 12707139 complement(3764921..3766072) 1 NC_017625.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: sdy:SDY_0125 cell division protein FtsZ; cell division protein FtsZ 3766072 12707139 EcDH1_3505 Escherichia coli DH1 cell division protein FtsZ YP_006093409.1 3764921 R 536056 CDS YP_006093410.1 386597010 12707140 complement(3766133..3767395) 1 NC_017625.1 PFAM: cell division protein FtsA; KEGG: sdy:SDY_0124 cell division protein FtsA; cell division protein FtsA 3767395 12707140 EcDH1_3506 Escherichia coli DH1 cell division protein FtsA YP_006093410.1 3766133 R 536056 CDS YP_006093411.1 386597011 12707141 complement(3767392..3768222) 1 NC_017625.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: sbc:SbBS512_E0086 cell division protein FtsQ; cell division protein FtsQ 3768222 12707141 EcDH1_3507 Escherichia coli DH1 cell division protein FtsQ YP_006093411.1 3767392 R 536056 CDS YP_006093412.1 386597012 12707142 complement(3768224..3769144) 1 NC_017625.1 KEGG: ssn:SSON_0100 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 3769144 12707142 EcDH1_3508 Escherichia coli DH1 D-alanine--D-alanine ligase YP_006093412.1 3768224 R 536056 CDS YP_006093413.1 386597013 12707143 complement(3769137..3770612) 1 NC_017625.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfv:SFV_0084 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 3770612 12707143 EcDH1_3509 Escherichia coli DH1 UDP-N-acetylmuramate--L-alanine ligase YP_006093413.1 3769137 R 536056 CDS YP_006093414.1 386597014 12707144 complement(3770666..3771733) 1 NC_017625.1 KEGG: sbo:SBO_0078 N-acetylglucosaminyl transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 3771733 12707144 EcDH1_3510 Escherichia coli DH1 UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_006093414.1 3770666 R 536056 CDS YP_006093415.1 386597015 12707145 complement(3771730..3772974) 1 NC_017625.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: sdy:SDY_0119 FtsW; cell division protein FtsW 3772974 12707145 EcDH1_3511 Escherichia coli DH1 cell division protein FtsW YP_006093415.1 3771730 R 536056 CDS YP_006093416.1 386597016 12707146 complement(3772974..3774290) 1 NC_017625.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sdy:SDY_0118 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 3774290 12707146 EcDH1_3512 Escherichia coli DH1 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_006093416.1 3772974 R 536056 CDS YP_006093417.1 386597017 12707147 complement(3774293..3775375) 1 NC_017625.1 KEGG: sbc:SbBS512_E0080 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 3775375 12707147 EcDH1_3513 Escherichia coli DH1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_006093417.1 3774293 R 536056 CDS YP_006093418.1 386597018 12707148 complement(3775369..3776727) 1 NC_017625.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sbc:SbBS512_E0079 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 3776727 12707148 EcDH1_3514 Escherichia coli DH1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_006093418.1 3775369 R 536056 CDS YP_006093419.1 386597019 12707149 complement(3776724..3778211) 1 NC_017625.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfx:S0084 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase 3778211 12707149 EcDH1_3515 Escherichia coli DH1 UDP-N-acetylmuramyl tripeptide synthetase YP_006093419.1 3776724 R 536056 CDS YP_006093420.1 386597020 12707150 complement(3778198..3779964) 1 NC_017625.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: sdy:SDY_0114 penicillin-binding protein 3; peptidoglycan glycosyltransferase 3779964 12707150 EcDH1_3516 Escherichia coli DH1 peptidoglycan glycosyltransferase YP_006093420.1 3778198 R 536056 CDS YP_006093421.1 386597021 12707151 complement(3779980..3780345) 1 NC_017625.1 PFAM: cell division protein FtsL; KEGG: sdy:SDY_0113 cell division protein FtsL; cell division protein FtsL 3780345 12707151 EcDH1_3517 Escherichia coli DH1 cell division protein FtsL YP_006093421.1 3779980 R 536056 CDS YP_006093422.1 386597022 12707152 complement(3780342..3781283) 1 NC_017625.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: sbc:SbBS512_E0075 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 3781283 12707152 EcDH1_3518 Escherichia coli DH1 S-adenosyl-methyltransferase MraW YP_006093422.1 3780342 R 536056 CDS YP_006093423.1 386597023 12707153 complement(3781285..3781743) 1 NC_017625.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: sbc:SbBS512_E0074 MraZ protein; MraZ protein 3781743 12707153 EcDH1_3519 Escherichia coli DH1 MraZ protein YP_006093423.1 3781285 R 536056 CDS YP_006093424.1 386597024 12707154 complement(3782345..3783349) 1 NC_017625.1 TIGRFAM: D-fructose-responsive transcription factor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E0073 fructose repressor; LacI family transcriptional regulator 3783349 12707154 EcDH1_3520 Escherichia coli DH1 LacI family transcriptional regulator YP_006093424.1 3782345 R 536056 CDS YP_006093425.1 386597025 12707155 complement(3783529..3784020) 1 NC_017625.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: sfv:SFV_0069 acetolactate synthase 3 regulatory subunit; acetolactate synthase small subunit 3784020 12707155 EcDH1_3521 Escherichia coli DH1 acetolactate synthase small subunit YP_006093425.1 3783529 R 536056 CDS YP_006093426.1 386597026 12707156 complement(3784023..3785747) 1 NC_017625.1 KEGG: ssn:SSON_0084 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; acetolactate synthase large subunit 3785747 12707156 EcDH1_3522 Escherichia coli DH1 acetolactate synthase large subunit YP_006093426.1 3784023 R 536056 CDS YP_006093427.1 386597027 12707157 complement(3786065..3787009) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_0083 leucine transcriptional activator; LysR family transcriptional regulator 3787009 12707157 EcDH1_3523 Escherichia coli DH1 LysR family transcriptional regulator YP_006093427.1 3786065 R 536056 CDS YP_006093428.1 386597028 12707158 3787848..3789419 1 NC_017625.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: sbc:SbBS512_E0068 2-isopropylmalate synthase; 2-isopropylmalate synthase 3789419 12707158 EcDH1_3524 Escherichia coli DH1 2-isopropylmalate synthase YP_006093428.1 3787848 D 536056 CDS YP_006093429.1 386597029 12707159 3789419..3790510 1 NC_017625.1 KEGG: sbc:SbBS512_E0067 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3790510 12707159 EcDH1_3525 Escherichia coli DH1 3-isopropylmalate dehydrogenase YP_006093429.1 3789419 D 536056 CDS YP_006093430.1 386597030 12707160 3790513..3791913 1 NC_017625.1 KEGG: sbc:SbBS512_E0066 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit 3791913 12707160 EcDH1_3526 Escherichia coli DH1 3-isopropylmalate dehydratase large subunit YP_006093430.1 3790513 D 536056 CDS YP_006093431.1 386597031 12707161 3791924..3792529 1 NC_017625.1 KEGG: sbc:SbBS512_E0065 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit 3792529 12707161 EcDH1_3527 Escherichia coli DH1 3-isopropylmalate dehydratase small subunit YP_006093431.1 3791924 D 536056 CDS YP_006093432.1 386597032 12707162 complement(3792578..3793756) 1 NC_017625.1 TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S0067 putative transport protein; sugar efflux transporter 3793756 12707162 EcDH1_3528 Escherichia coli DH1 sugar efflux transporter YP_006093432.1 3792578 R 536056 CDS YP_006093433.1 386597033 12707163 complement(3793858..3793989) 1 NC_017625.1 KEGG: cko:CKO_03311 hypothetical protein; hypothetical protein 3793989 12707163 EcDH1_3529 Escherichia coli DH1 hypothetical protein YP_006093433.1 3793858 R 536056 CDS YP_006093434.1 386597034 12707165 3795897..3796880 1 NC_017625.1 TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; thiamine ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sdy:SDY_0095 thiamin transporter substrate binding subunit; thiamine ABC transporter substrate-binding protein 3796880 12707165 EcDH1_3531 Escherichia coli DH1 thiamine ABC transporter substrate-binding protein YP_006093434.1 3795897 D 536056 CDS YP_006093435.1 386597035 12707166 3796856..3798466 1 NC_017625.1 TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S0064 thiamine transporter membrane protein; thiamine ABC transporter inner membrane subunit 3798466 12707166 EcDH1_3532 Escherichia coli DH1 thiamine ABC transporter inner membrane subunit YP_006093435.1 3796856 D 536056 CDS YP_006093436.1 386597036 12707167 3798450..3799148 1 NC_017625.1 KEGG: sfx:S0063 thiamine transporter ATP-binding subunit; TIGRFAM: ABC transporter, ATPase subunit, ThiQ subfamily; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter ATPase 3799148 12707167 EcDH1_3533 Escherichia coli DH1 ABC transporter ATPase YP_006093436.1 3798450 D 536056 CDS YP_006093437.1 386597037 12707168 complement(3799262..3800026) 1 NC_017625.1 PFAM: SNARE associated Golgi protein; KEGG: sbo:SBO_0052 hypothetical protein; hypothetical protein 3800026 12707168 EcDH1_3534 Escherichia coli DH1 hypothetical protein YP_006093437.1 3799262 R 536056 CDS YP_006093438.1 386597038 12707169 complement(3800112..3800990) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sbo:SBO_0051 DNA-binding transcriptional regulator AraC; AraC family transcriptional regulator 3800990 12707169 EcDH1_3535 Escherichia coli DH1 AraC family transcriptional regulator YP_006093438.1 3800112 R 536056 CDS YP_006093439.1 386597039 12707170 3801329..3803029 1 NC_017625.1 TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: sfx:S0060 ribulokinase; L-ribulokinase 3803029 12707170 EcDH1_3536 Escherichia coli DH1 L-ribulokinase YP_006093439.1 3801329 D 536056 CDS YP_006093440.1 386597040 12707171 3803040..3804542 1 NC_017625.1 PFAM: L-arabinose isomerase; KEGG: sbo:SBO_0049 L-arabinose isomerase; L-arabinose isomerase 3804542 12707171 EcDH1_3537 Escherichia coli DH1 L-arabinose isomerase YP_006093440.1 3803040 D 536056 CDS YP_006093441.1 386597041 12707172 3804827..3805522 1 NC_017625.1 KEGG: ssn:SSON_0067 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; L-ribulose-5-phosphate 4-epimerase 3805522 12707172 EcDH1_3538 Escherichia coli DH1 L-ribulose-5-phosphate 4-epimerase YP_006093441.1 3804827 D 536056 CDS YP_006093442.1 386597042 12707173 3805597..3807948 1 NC_017625.1 KEGG: sbc:SbBS512_E0052 DNA polymerase II; PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; DNA-directed DNA polymerase 3807948 12707173 EcDH1_3539 Escherichia coli DH1 DNA-directed DNA polymerase YP_006093442.1 3805597 D 536056 CDS YP_006093443.1 386597043 12707174 3808113..3811019 1 NC_017625.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfv:SFV_0051 ATP-dependent helicase HepA; SNF2-related protein 3811019 12707174 EcDH1_3540 Escherichia coli DH1 SNF2-related protein YP_006093443.1 3808113 D 536056 CDS YP_006093444.1 386597044 12707175 3811031..3811690 1 NC_017625.1 PFAM: pseudouridine synthase; KEGG: sdy:SDY_0082 23S rRNA/tRNA pseudouridine synthase A; pseudouridine synthase 3811690 12707175 EcDH1_3541 Escherichia coli DH1 pseudouridine synthase YP_006093444.1 3811031 D 536056 CDS YP_006093445.1 386597045 12707176 complement(3812098..3812256) 1 NC_017625.1 KEGG: sdy:SDY_0081 hypothetical protein; hypothetical protein 3812256 12707176 EcDH1_3542 Escherichia coli DH1 hypothetical protein YP_006093445.1 3812098 R 536056 CDS YP_006093446.1 386597046 12707177 complement(3812253..3812903) 1 NC_017625.1 KEGG: sdy:SDY_0081 hypothetical protein; hypothetical protein 3812903 12707177 EcDH1_3543 Escherichia coli DH1 hypothetical protein YP_006093446.1 3812253 R 536056 CDS YP_006093447.1 386597047 12707178 complement(3813198..3814013) 1 NC_017625.1 PFAM: heat shock protein DnaJ domain protein; KEGG: sdy:SDY_0080 Dna-J like membrane chaperone protein; heat shock protein DnaJ domain-containing protein 3814013 12707178 EcDH1_3544 Escherichia coli DH1 heat shock protein DnaJ domain-containing protein YP_006093447.1 3813198 R 536056 CDS YP_006093448.1 386597048 12707179 3814268..3816622 1 NC_017625.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: sbo:SBO_0043 organic solvent tolerance protein; organic solvent tolerance protein 3816622 12707179 EcDH1_3545 Escherichia coli DH1 organic solvent tolerance protein YP_006093448.1 3814268 D 536056 CDS YP_006093449.1 386597049 12707180 3816675..3817961 1 NC_017625.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sbo:SBO_0042 peptidyl-prolyl cis-trans isomerase SurA; SurA domain-containing protein 3817961 12707180 EcDH1_3546 Escherichia coli DH1 SurA domain-containing protein YP_006093449.1 3816675 D 536056 CDS YP_006093450.1 386597050 12707181 3817961..3818950 1 NC_017625.1 KEGG: ssn:SSON_0060 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 3818950 12707181 EcDH1_3547 Escherichia coli DH1 4-hydroxythreonine-4-phosphate dehydrogenase YP_006093450.1 3817961 D 536056 CDS YP_006093451.1 386597051 12707182 3818947..3819768 1 NC_017625.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: sbo:SBO_0040 dimethyladenosine transferase; dimethyladenosine transferase 3819768 12707182 EcDH1_3548 Escherichia coli DH1 dimethyladenosine transferase YP_006093451.1 3818947 D 536056 CDS YP_006093452.1 386597052 12707183 3819771..3820148 1 NC_017625.1 PFAM: ApaG domain protein; KEGG: sdy:SDY_0075 ApaG; ApaG protein 3820148 12707183 EcDH1_3549 Escherichia coli DH1 ApaG protein YP_006093452.1 3819771 D 536056 CDS YP_006093453.1 386597053 12707184 3820155..3820997 1 NC_017625.1 KEGG: sbc:SbBS512_E0043 bis(5'-nucleosyl)-tetraphosphatase (symmetrical); TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase; bis(5'-nucleosyl)-tetraphosphatase 3820997 12707184 EcDH1_3550 Escherichia coli DH1 bis(5'-nucleosyl)-tetraphosphatase YP_006093453.1 3820155 D 536056 CDS YP_006093454.1 386597054 12707185 complement(3821075..3821665) 1 NC_017625.1 PFAM: dihydrofolate reductase region; KEGG: sbc:SbBS512_E0042 dihydrofolate reductase; Dihydrofolate reductase 3821665 12707185 EcDH1_3551 Escherichia coli DH1 Dihydrofolate reductase YP_006093454.1 3821075 R 536056 CDS YP_006093455.1 386597055 12707186 complement(3821746..3823608) 1 NC_017625.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: sbc:SbBS512_E0041 glutathione-regulated potassium-efflux system protein KefC; potassium efflux system protein 3823608 12707186 EcDH1_3552 Escherichia coli DH1 potassium efflux system protein YP_006093455.1 3821746 R 536056 CDS YP_006093456.1 386597056 12707187 complement(3823601..3824131) 1 NC_017625.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sfv:SFV_0040 glutathione-regulated potassium-efflux system ancillary protein KefF; NAD(P)H dehydrogenase (quinone) 3824131 12707187 EcDH1_3553 Escherichia coli DH1 NAD(P)H dehydrogenase (quinone) YP_006093456.1 3823601 R 536056 CDS YP_006093457.1 386597057 12707188 complement(3824239..3825570) 1 NC_017625.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sfv:SFV_0039 putative transport protein; major facilitator superfamily protein 3825570 12707188 EcDH1_3554 Escherichia coli DH1 major facilitator superfamily protein YP_006093457.1 3824239 R 536056 CDS YP_006093458.1 386597058 12707189 complement(3825627..3825914) 1 NC_017625.1 KEGG: sdy:SDY_0066 putative ferredoxin; putative ferredoxin 3825914 12707189 EcDH1_3555 Escherichia coli DH1 putative ferredoxin YP_006093458.1 3825627 R 536056 CDS YP_006093459.1 386597059 12707190 complement(3825911..3827197) 1 NC_017625.1 PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: ssn:SSON_0051 putative oxidoreductase FixC; FAD dependent oxidoreductase 3827197 12707190 EcDH1_3556 Escherichia coli DH1 FAD dependent oxidoreductase YP_006093459.1 3825911 R 536056 CDS YP_006093460.1 386597060 12707191 complement(3827248..3828189) 1 NC_017625.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ssn:SSON_0050 putative electron transfer flavoprotein FixB; electron transfer flavoprotein subunit alpha 3828189 12707191 EcDH1_3557 Escherichia coli DH1 electron transfer flavoprotein subunit alpha YP_006093460.1 3827248 R 536056 CDS YP_006093461.1 386597061 12707192 complement(3828204..3828974) 1 NC_017625.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ssn:SSON_0049 putative electron transfer flavoprotein FixA; electron transfer flavoprotein subunit alpha/beta 3828974 12707192 EcDH1_3558 Escherichia coli DH1 electron transfer flavoprotein subunit alpha/beta YP_006093461.1 3828204 R 536056 CDS YP_006093462.1 386597062 12707193 3829446..3830960 1 NC_017625.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: ssn:SSON_0048 L-carnitine/gamma-butyrobetaine antiporter; choline/carnitine/betaine transporter 3830960 12707193 EcDH1_3559 Escherichia coli DH1 choline/carnitine/betaine transporter YP_006093462.1 3829446 D 536056 CDS YP_006093463.1 386597063 12707194 3830991..3832133 1 NC_017625.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sdy:SDY_0061 crotonobetainyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3832133 12707194 EcDH1_3560 Escherichia coli DH1 acyl-CoA dehydrogenase YP_006093463.1 3830991 D 536056 CDS YP_006093464.1 386597064 12707195 3832262..3833479 1 NC_017625.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sfx:S0037 crotonobetainyl-CoA:carnitine CoA-transferase; L-carnitine dehydratase/bile acid-inducible protein F 3833479 12707195 EcDH1_3561 Escherichia coli DH1 L-carnitine dehydratase/bile acid-inducible protein F YP_006093464.1 3832262 D 536056 CDS YP_006093465.1 386597065 12707196 3833553..3835106 1 NC_017625.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ssn:SSON_0043 putative crotonobetaine/carnitine-CoA ligase; AMP-dependent synthetase and ligase 3835106 12707196 EcDH1_3562 Escherichia coli DH1 AMP-dependent synthetase and ligase YP_006093465.1 3833553 D 536056 CDS YP_006093466.1 386597066 12707197 3835215..3836000 1 NC_017625.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sfv:SFV_0030 carnitinyl-CoA dehydratase; Enoyl-CoA hydratase/isomerase 3836000 12707197 EcDH1_3563 Escherichia coli DH1 Enoyl-CoA hydratase/isomerase YP_006093466.1 3835215 D 536056 CDS YP_006093467.1 386597067 12707198 3836006..3836596 1 NC_017625.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: ssn:SSON_0041 carnitine operon protein CaiE; transferase hexapeptide repeat containing protein 3836596 12707198 EcDH1_3564 Escherichia coli DH1 transferase hexapeptide repeat containing protein YP_006093467.1 3836006 D 536056 CDS YP_006093468.1 386597068 12707199 complement(3836682..3837077) 1 NC_017625.1 KEGG: sfv:SFV_0028 DNA-binding transcriptional activator CaiF; DNA-binding transcriptional activator CaiF 3837077 12707199 EcDH1_3565 Escherichia coli DH1 DNA-binding transcriptional activator CaiF YP_006093468.1 3836682 R 536056 CDS YP_006093469.1 386597069 12707200 complement(3837339..3840560) 1 NC_017625.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: sbo:SBO_0032 carbamoyl phosphate synthase large subunit; carbamoyl-phosphate synthase large subunit 3840560 12707200 EcDH1_3566 Escherichia coli DH1 carbamoyl-phosphate synthase large subunit YP_006093469.1 3837339 R 536056 CDS YP_006093470.1 386597070 12707201 complement(3840578..3841726) 1 NC_017625.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: sbc:SbBS512_E0036 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit 3841726 12707201 EcDH1_3567 Escherichia coli DH1 carbamoyl-phosphate synthase small subunit YP_006093470.1 3840578 R 536056 CDS YP_006093471.1 386597071 12707202 complement(3842182..3843003) 1 NC_017625.1 PFAM: dihydrodipicolinate reductase; Dihydrodipicolinate reductase 3843003 12707202 EcDH1_3568 Escherichia coli DH1 Dihydrodipicolinate reductase YP_006093471.1 3842182 R 536056 CDS YP_006093472.1 386597072 12707203 complement(3843170..3844084) 1 NC_017625.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ssn:SSON_0035 ribonucleoside hydrolase RihC; inosine/uridine-preferring nucleoside hydrolase 3844084 12707203 EcDH1_3569 Escherichia coli DH1 inosine/uridine-preferring nucleoside hydrolase YP_006093472.1 3843170 R 536056 CDS YP_006093473.1 386597073 12707204 complement(3844150..3845100) 1 NC_017625.1 KEGG: sdy:SDY_0051 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 3845100 12707204 EcDH1_3570 Escherichia coli DH1 hydroxymethylbutenyl pyrophosphate reductase YP_006093473.1 3844150 R 536056 CDS YP_006093474.1 386597074 12707205 complement(3845102..3845551) 1 NC_017625.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sbc:SbBS512_E0032 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 3845551 12707205 EcDH1_3571 Escherichia coli DH1 FKBP-type peptidylprolyl isomerase YP_006093474.1 3845102 R 536056 CDS YP_006093475.1 386597075 12707206 complement(3845676..3846170) 1 NC_017625.1 KEGG: sbc:SbBS512_E0031 signal peptidase II; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 3846170 12707206 EcDH1_3572 Escherichia coli DH1 lipoprotein signal peptidase YP_006093475.1 3845676 R 536056 CDS YP_006093476.1 386597076 12707207 complement(3846170..3848986) 1 NC_017625.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: ssn:SSON_0031 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 3848986 12707207 EcDH1_3573 Escherichia coli DH1 isoleucyl-tRNA synthetase YP_006093476.1 3846170 R 536056 CDS YP_006093477.1 386597077 12707208 complement(3849029..3849970) 1 NC_017625.1 KEGG: sbc:SbBS512_E0029 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF 3849970 12707208 EcDH1_3574 Escherichia coli DH1 riboflavin biosynthesis protein RibF YP_006093477.1 3849029 R 536056 CDS YP_006093478.1 386597078 12707209 3850299..3850562 1 NC_017625.1 PFAM: ribosomal protein S20; KEGG: sdy:SDY_0045 30S ribosomal protein S20; 30S ribosomal protein S20 3850562 12707209 EcDH1_3575 Escherichia coli DH1 30S ribosomal protein S20 YP_006093478.1 3850299 D 536056 CDS YP_006093479.1 386597079 12707211 complement(3851757..3852656) 1 NC_017625.1 PFAM: regulatory protein LysR; KEGG: sdy:SDY_0019 transcriptional activator NhaR; LysR family transcriptional regulator 3852656 12707211 EcDH1_3577 Escherichia coli DH1 LysR family transcriptional regulator YP_006093479.1 3851757 R 536056 CDS YP_006093480.1 386597080 12707212 complement(3852722..3853888) 1 NC_017625.1 PFAM: Na+/H+ antiporter NhaA; KEGG: sfx:S0018 pH-dependent sodium/proton antiporter; Na+/H+ antiporter NhaA 3853888 12707212 EcDH1_3578 Escherichia coli DH1 Na+/H+ antiporter NhaA YP_006093480.1 3852722 R 536056 CDS YP_006093481.1 386597081 12707213 3854474..3854626 1 NC_017625.1 PFAM: Hok/gef cell toxic protein; KEGG: sbo:SBO_0017 Gef; Hok/gef cell toxic protein 3854626 12707213 EcDH1_3579 Escherichia coli DH1 Hok/gef cell toxic protein YP_006093481.1 3854474 D 536056 CDS YP_006093482.1 386597082 12707214 complement(3854657..3854797) 1 NC_017625.1 hypothetical protein 3854797 12707214 EcDH1_3580 Escherichia coli DH1 hypothetical protein YP_006093482.1 3854657 R 536056 CDS YP_006093483.1 386597083 12707215 complement(3854820..3855932) 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: afl:Aflv_2377 transposase; transposase IS4 family protein 3855932 12707215 EcDH1_3581 Escherichia coli DH1 transposase IS4 family protein YP_006093483.1 3854820 R 536056 CDS YP_006093484.1 386597084 12707216 complement(3856079..3857209) 1 NC_017625.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sfv:SFV_0013 chaperone protein DnaJ; chaperone protein DnaJ 3857209 12707216 EcDH1_3582 Escherichia coli DH1 chaperone protein DnaJ YP_006093484.1 3856079 R 536056 CDS YP_006093485.1 386597085 12707217 complement(3857298..3859214) 1 NC_017625.1 KEGG: sdy:SDY_0013 chaperone HSP70; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 3859214 12707217 EcDH1_3583 Escherichia coli DH1 chaperone protein DnaK YP_006093485.1 3857298 R 536056 CDS YP_006093486.1 386597086 12707218 3859591..3859995 1 NC_017625.1 KEGG: ssn:SSON_0013 hypothetical protein; hypothetical protein 3859995 12707218 EcDH1_3584 Escherichia coli DH1 hypothetical protein YP_006093486.1 3859591 D 536056 CDS YP_006093487.1 386597087 12707219 3860021..3860734 1 NC_017625.1 PFAM: protein of unknown function UPF0174; KEGG: sfx:S0012 hypothetical protein; hypothetical protein 3860734 12707219 EcDH1_3585 Escherichia coli DH1 hypothetical protein YP_006093487.1 3860021 D 536056 CDS YP_006093488.1 386597088 12707220 3860883..3861449 1 NC_017625.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: ssn:SSON_0011 hypothetical protein; GPR1/FUN34/yaaH family protein 3861449 12707220 EcDH1_3586 Escherichia coli DH1 GPR1/FUN34/yaaH family protein YP_006093488.1 3860883 D 536056 CDS YP_006093489.1 386597089 12707221 complement(3861484..3862071) 1 NC_017625.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sfv:SFV_0008 molybdenum cofactor biosynthesis protein; molybdenum cofactor synthesis domain-containing protein 3862071 12707221 EcDH1_3587 Escherichia coli DH1 molybdenum cofactor synthesis domain-containing protein YP_006093489.1 3861484 R 536056 CDS YP_006093490.1 386597090 12707222 complement(3862186..3863139) 1 NC_017625.1 KEGG: ssn:SSON_0009 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 3863139 12707222 EcDH1_3588 Escherichia coli DH1 transaldolase YP_006093490.1 3862186 R 536056 CDS YP_006093491.1 386597091 12707223 3863418..3864848 1 NC_017625.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sbc:SbBS512_E0007 amino acid carrier protein; amino acid carrier protein 3864848 12707223 EcDH1_3589 Escherichia coli DH1 amino acid carrier protein YP_006093491.1 3863418 D 536056 CDS YP_006093492.1 386597092 12707224 3864918..3865694 1 NC_017625.1 PFAM: protein of unknown function DUF328; KEGG: sfx:S0006 hypothetical protein; hypothetical protein 3865694 12707224 EcDH1_3590 Escherichia coli DH1 hypothetical protein YP_006093492.1 3864918 D 536056 CDS YP_006093493.1 386597093 12707225 complement(3865847..3866143) 1 NC_017625.1 KEGG: ssn:SSON_0005 hypothetical protein; hypothetical protein 3866143 12707225 EcDH1_3591 Escherichia coli DH1 hypothetical protein YP_006093493.1 3865847 R 536056 CDS YP_006093494.1 386597094 12707226 complement(3866357..3867643) 1 NC_017625.1 KEGG: sdy:SDY_0004 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 3867643 12707226 EcDH1_3592 Escherichia coli DH1 threonine synthase YP_006093494.1 3866357 R 536056 CDS YP_006093495.1 386597095 12707227 complement(3867644..3868576) 1 NC_017625.1 TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sdy:SDY_0003 homoserine kinase; homoserine kinase 3868576 12707227 EcDH1_3593 Escherichia coli DH1 homoserine kinase YP_006093495.1 3867644 R 536056 CDS YP_006093496.1 386597096 12707228 complement(3868578..3871040) 1 NC_017625.1 KEGG: sfx:S0002 bifunctional aspartokinase I/homeserine dehydrogenase I; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; aspartate kinase 3871040 12707228 EcDH1_3594 Escherichia coli DH1 aspartate kinase YP_006093496.1 3868578 R 536056 CDS YP_006093497.1 386597097 12707229 complement(3871401..3872087) 1 NC_017625.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sfl:SF4434 putative RNA methyltransferase; RNA methyltransferase, TrmH family, group 1 3872087 12707229 EcDH1_3595 Escherichia coli DH1 RNA methyltransferase, TrmH family, group 1 YP_006093497.1 3871401 R 536056 CDS YP_006093498.1 386597098 12707230 3872723..3873439 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_4662 DNA-binding response regulator in two-component regulatory system with ArcB or CpxA; winged helix family two component transcriptional regulator 3873439 12707230 EcDH1_3596 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006093498.1 3872723 D 536056 CDS YP_006093499.1 386597099 12707231 complement(3873499..3874851) 1 NC_017625.1 PFAM: Inner membrane CreD family protein; KEGG: sfv:SFV_4434 hypothetical protein; Inner membrane CreD family protein 3874851 12707231 EcDH1_3597 Escherichia coli DH1 Inner membrane CreD family protein YP_006093499.1 3873499 R 536056 CDS YP_006093500.1 386597100 12707232 complement(3874909..3876333) 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ssn:SSON_4549 sensory histidine kinase CreC; histidine kinase 3876333 12707232 EcDH1_3598 Escherichia coli DH1 histidine kinase YP_006093500.1 3874909 R 536056 CDS YP_006093501.1 386597101 12707233 complement(3876333..3877022) 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_4548 DNA-binding response regulator CreB; winged helix family two component transcriptional regulator 3877022 12707233 EcDH1_3599 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006093501.1 3876333 R 536056 CDS YP_006093502.1 386597102 12707234 complement(3877035..3877508) 1 NC_017625.1 PFAM: CreA family protein; KEGG: sdy:SDY_4658 hypothetical protein; CreA family protein 3877508 12707234 EcDH1_3600 Escherichia coli DH1 CreA family protein YP_006093502.1 3877035 R 536056 CDS YP_006093503.1 386597103 12707235 3877719..3878588 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: sbc:SbBS512_E4943 right origin-binding protein; AraC family transcriptional regulator 3878588 12707235 EcDH1_3601 Escherichia coli DH1 AraC family transcriptional regulator YP_006093503.1 3877719 D 536056 CDS YP_006093504.1 386597104 12707236 complement(3878585..3879232) 1 NC_017625.1 PFAM: Phosphoglycerate mutase; KEGG: ssn:SSON_4545 phosphoglycerate mutase; phosphoglycerate mutase 3879232 12707236 EcDH1_3602 Escherichia coli DH1 phosphoglycerate mutase YP_006093504.1 3878585 R 536056 CDS YP_006093505.1 386597105 12707237 3879284..3879796 1 NC_017625.1 PFAM: protein of unknown function DUF84; KEGG: sbo:SBO_4457 NTPase; hypothetical protein 3879796 12707237 EcDH1_3603 Escherichia coli DH1 hypothetical protein YP_006093505.1 3879284 D 536056 CDS YP_006093506.1 386597106 12707238 complement(3879943..3880239) 1 NC_017625.1 TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sdy:SDY_4654 Trp operon repressor; Trp operon repressor 3880239 12707238 EcDH1_3604 Escherichia coli DH1 Trp operon repressor YP_006093506.1 3879943 R 536056 CDS YP_006093507.1 386597107 12707239 complement(3880359..3882296) 1 NC_017625.1 PFAM: Lytic transglycosylase catalytic; KEGG: sbo:SBO_4455 lytic murein transglycosylase; lytic transglycosylase 3882296 12707239 EcDH1_3605 Escherichia coli DH1 lytic transglycosylase YP_006093507.1 3880359 R 536056 CDS YP_006093508.1 386597108 12707240 3882507..3884174 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_4652 putative ABC transporter ATP-binding protein; ABC transporter 3884174 12707240 EcDH1_3606 Escherichia coli DH1 ABC transporter YP_006093508.1 3882507 D 536056 CDS YP_006093509.1 386597109 12707241 complement(3884281..3884448) 1 NC_017625.1 KEGG: sbc:SbBS512_E4938 hypothetical protein; hypothetical protein 3884448 12707241 EcDH1_3607 Escherichia coli DH1 hypothetical protein YP_006093509.1 3884281 R 536056 CDS YP_006093510.1 386597110 12707242 complement(3884482..3885714) 1 NC_017625.1 TIGRFAM: cytidyltransferase-related domain protein; nicotinamide-nucleotide adenylyltransferase; PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E4937 nicotinamide-nucleotide adenylyltransferase; XRE family transcriptional regulator 3885714 12707242 EcDH1_3608 Escherichia coli DH1 XRE family transcriptional regulator YP_006093510.1 3884482 R 536056 CDS YP_006093511.1 386597111 12707243 complement(3885735..3887117) 1 NC_017625.1 KEGG: sdy:SDY_4650 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein RadA 3887117 12707243 EcDH1_3609 Escherichia coli DH1 DNA repair protein RadA YP_006093511.1 3885735 R 536056 CDS YP_006093512.1 386597112 12707244 complement(3887166..3888134) 1 NC_017625.1 KEGG: sbc:SbBS512_E4935 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 3888134 12707244 EcDH1_3610 Escherichia coli DH1 phosphoserine phosphatase SerB YP_006093512.1 3887166 R 536056 CDS YP_006093513.1 386597113 12707245 3888240..3888884 1 NC_017625.1 KEGG: sbo:SBO_4450 hypothetical protein; hypothetical protein 3888884 12707245 EcDH1_3611 Escherichia coli DH1 hypothetical protein YP_006093513.1 3888240 D 536056 CDS YP_006093514.1 386597114 12707246 3888912..3889928 1 NC_017625.1 TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoyltransferase and lipoate-protein ligase; KEGG: ssn:SSON_4536 lipoate-protein ligase A; lipoyltransferase and lipoate-protein ligase 3889928 12707246 EcDH1_3612 Escherichia coli DH1 lipoyltransferase and lipoate-protein ligase YP_006093514.1 3888912 D 536056 CDS YP_006093515.1 386597115 12707247 complement(3889929..3891260) 1 NC_017625.1 PFAM: HipA domain protein; KEGG: set:SEN4331A hypothetical protein; HipA domain-containing protein 3891260 12707247 EcDH1_3613 Escherichia coli DH1 HipA domain-containing protein YP_006093515.1 3889929 R 536056 CDS YP_006093516.1 386597116 12707248 complement(3891427..3892146) 1 NC_017625.1 TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: sbc:SbBS512_E4931 purine nucleoside phosphorylase; purine nucleoside phosphorylase 3892146 12707248 EcDH1_3614 Escherichia coli DH1 purine nucleoside phosphorylase YP_006093516.1 3891427 R 536056 CDS YP_006093517.1 386597117 12707249 complement(3892203..3893426) 1 NC_017625.1 KEGG: sbc:SbBS512_E4930 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein; phosphopentomutase 3893426 12707249 EcDH1_3615 Escherichia coli DH1 phosphopentomutase YP_006093517.1 3892203 R 536056 CDS YP_006093518.1 386597118 12707250 complement(3893478..3894800) 1 NC_017625.1 KEGG: sbc:SbBS512_E4929 thymidine phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; thymidine phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like; thymidine phosphorylase 3894800 12707250 EcDH1_3616 Escherichia coli DH1 thymidine phosphorylase YP_006093518.1 3893478 R 536056 CDS YP_006093519.1 386597119 12707251 complement(3894927..3895706) 1 NC_017625.1 KEGG: sdy:SDY_4641 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 3895706 12707251 EcDH1_3617 Escherichia coli DH1 deoxyribose-phosphate aldolase YP_006093519.1 3894927 R 536056 CDS YP_006093520.1 386597120 12707252 3895964..3897514 1 NC_017625.1 KEGG: ssn:SSON_4531 hypothetical protein; hypothetical protein 3897514 12707252 EcDH1_3618 Escherichia coli DH1 hypothetical protein YP_006093520.1 3895964 D 536056 CDS YP_006093521.1 386597121 12707253 3897486..3898349 1 NC_017625.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: sfv:SFV_4413 putative activating enzyme; radical SAM protein 3898349 12707253 EcDH1_3619 Escherichia coli DH1 radical SAM protein YP_006093521.1 3897486 D 536056 CDS YP_006093522.1 386597122 12707254 complement(3898769..3899548) 1 NC_017625.1 PFAM: TatD-related deoxyribonuclease; KEGG: sfv:SFV_4412 putative deoxyribonuclease YjjV; TatD-related deoxyribonuclease 3899548 12707254 EcDH1_3620 Escherichia coli DH1 TatD-related deoxyribonuclease YP_006093522.1 3898769 R 536056 CDS YP_006093523.1 386597123 12707255 complement(3899545..3900618) 1 NC_017625.1 PFAM: Patatin; KEGG: ssn:SSON_4528 hypothetical protein; patatin 3900618 12707255 EcDH1_3621 Escherichia coli DH1 patatin YP_006093523.1 3899545 R 536056 CDS YP_006093524.1 386597124 12707256 complement(3900740..3900901) 1 NC_017625.1 PFAM: protein of unknown function DUF1328; KEGG: sbc:SbBS512_E4920 hypothetical protein; hypothetical protein 3900901 12707256 EcDH1_3622 Escherichia coli DH1 hypothetical protein YP_006093524.1 3900740 R 536056 CDS YP_006093525.1 386597125 12707257 complement(3901028..3901633) 1 NC_017625.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ssn:SSON_4526 periplasmic protein; transport-associated 3901633 12707257 EcDH1_3623 Escherichia coli DH1 transport-associated YP_006093525.1 3901028 R 536056 CDS YP_006093526.1 386597126 12707258 complement(3902026..3903615) 1 NC_017625.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: sdy:SDY_4634 peptide chain release factor 3; peptide chain release factor 3 3903615 12707258 EcDH1_3624 Escherichia coli DH1 peptide chain release factor 3 YP_006093526.1 3902026 R 536056 CDS YP_006093527.1 386597127 12707259 complement(3903706..3904383) 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdy:SDY_4633 nucleotidase; HAD-superfamily hydrolase 3904383 12707259 EcDH1_3625 Escherichia coli DH1 HAD-superfamily hydrolase YP_006093527.1 3903706 R 536056 CDS YP_006093528.1 386597128 12707260 complement(3904398..3904844) 1 NC_017625.1 KEGG: sfv:SFV_4407 ribosomal-protein-alanine N-acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 3904844 12707260 EcDH1_3626 Escherichia coli DH1 ribosomal-protein-alanine acetyltransferase YP_006093528.1 3904398 R 536056 CDS YP_006093529.1 386597129 12707261 complement(3904813..3905226) 1 NC_017625.1 KEGG: sdy:SDY_4631 DNA polymerase III subunit psi; TIGRFAM: DNA polymerase III, psi subunit; PFAM: DNA polymerase III psi subunit; DNA polymerase III subunit psi 3905226 12707261 EcDH1_3627 Escherichia coli DH1 DNA polymerase III subunit psi YP_006093529.1 3904813 R 536056 CDS YP_006093530.1 386597130 12707262 3905329..3906360 1 NC_017625.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; Methyltransferase small domain protein; KEGG: sdy:SDY_4630 16S ribosomal RNA m2G1207 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3906360 12707262 EcDH1_3628 Escherichia coli DH1 rRNA (guanine-N(2)-)-methyltransferase YP_006093530.1 3905329 D 536056 CDS YP_006093531.1 386597131 12707266 complement(3906989..3907225) 1 NC_017625.1 PFAM: protein of unknown function DUF1435; KEGG: sfv:SFV_4401 putative inner membrane protein; hypothetical protein 3907225 12707266 EcDH1_3629 Escherichia coli DH1 hypothetical protein YP_006093531.1 3906989 R 536056 CDS YP_006093532.1 386597132 12707267 3907366..3908154 1 NC_017625.1 PFAM: ferric iron reductase; KEGG: sbo:SBO_4427 ferric iron reductase involved in ferric hydroximate transport; ferric iron reductase 3908154 12707267 EcDH1_3630 Escherichia coli DH1 ferric iron reductase YP_006093532.1 3907366 D 536056 CDS YP_006093533.1 386597133 12707268 complement(3908192..3908869) 1 NC_017625.1 PFAM: regulatory protein LuxR; KEGG: sfv:SFV_4399 DNA-binding transcriptional activator BglJ; LuxR family transcriptional regulator 3908869 12707268 EcDH1_3631 Escherichia coli DH1 LuxR family transcriptional regulator YP_006093533.1 3908192 R 536056 CDS YP_006093534.1 386597134 12707269 complement(3908827..3909552) 1 NC_017625.1 PFAM: regulatory protein LuxR; KEGG: sbo:SBO_4425 putative regulator; LuxR family transcriptional regulator 3909552 12707269 EcDH1_3632 Escherichia coli DH1 LuxR family transcriptional regulator YP_006093534.1 3908827 R 536056 CDS YP_006093535.1 386597135 12707270 3910171..3910941 1 NC_017625.1 PFAM: protein of unknown function DUF1212; KEGG: sfv:SFV_4395 putative structural protein; hypothetical protein 3910941 12707270 EcDH1_3633 Escherichia coli DH1 hypothetical protein YP_006093535.1 3910171 D 536056 CDS YP_006093536.1 386597136 12707271 3910932..3911405 1 NC_017625.1 KEGG: sfv:SFV_4394 hypothetical protein; hypothetical protein 3911405 12707271 EcDH1_3634 Escherichia coli DH1 hypothetical protein YP_006093536.1 3910932 D 536056 CDS YP_006093537.1 386597137 12707272 3911512..3912051 1 NC_017625.1 KEGG: sbc:SbBS512_E4902 primosomal protein 1; primosomal protein 1 3912051 12707272 EcDH1_3635 Escherichia coli DH1 primosomal protein 1 YP_006093537.1 3911512 D 536056 CDS YP_006093538.1 386597138 12707273 3912054..3912791 1 NC_017625.1 SMART: AAA ATPase; KEGG: sbc:SbBS512_E4901 DNA replication protein DnaC; AAA ATPase 3912791 12707273 EcDH1_3636 Escherichia coli DH1 AAA ATPase YP_006093538.1 3912054 D 536056 CDS YP_006093539.1 386597139 12707274 3912840..3913334 1 NC_017625.1 KEGG: sbc:SbBS512_E4900 hypothetical protein; hypothetical protein 3913334 12707274 EcDH1_3637 Escherichia coli DH1 hypothetical protein YP_006093539.1 3912840 D 536056 CDS YP_006093540.1 386597140 12707275 3913588..3915879 1 NC_017625.1 PFAM: sulfatase; KEGG: ssn:SSON_4505 phosphoglycerol transferase I; Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase 3915879 12707275 EcDH1_3638 Escherichia coli DH1 Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase YP_006093540.1 3913588 D 536056 CDS YP_006093541.1 386597141 12707276 complement(3916017..3917039) 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_4504 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein 3917039 12707276 EcDH1_3639 Escherichia coli DH1 alcohol dehydrogenase GroES domain-containing protein YP_006093541.1 3916017 R 536056 CDS YP_006093542.1 386597142 12707277 3917178..3918092 1 NC_017625.1 PFAM: GntR domain protein; KEGG: eca:ECA4381 putative DNA-binding protein; GntR family transcriptional regulator 3918092 12707277 EcDH1_3640 Escherichia coli DH1 GntR family transcriptional regulator YP_006093542.1 3917178 D 536056 CDS YP_006093543.1 386597143 12707278 3918307..3919668 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_4387 putative transport protein; major facilitator superfamily protein 3919668 12707278 EcDH1_3641 Escherichia coli DH1 major facilitator superfamily protein YP_006093543.1 3918307 D 536056 CDS YP_006093544.1 386597144 12707279 complement(3919717..3921372) 1 NC_017625.1 PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: sbo:SBO_4414 methyl-accepting chemotaxis protein I; methyl-accepting chemotaxis sensory transducer 3921372 12707279 EcDH1_3642 Escherichia coli DH1 methyl-accepting chemotaxis sensory transducer YP_006093544.1 3919717 R 536056 CDS YP_006093545.1 386597145 12707280 3921750..3923900 1 NC_017625.1 PFAM: carbon starvation protein CstA; KEGG: sbc:SbBS512_E4880 carbon starvation family protein; carbon starvation protein CstA 3923900 12707280 EcDH1_3643 Escherichia coli DH1 carbon starvation protein CstA YP_006093545.1 3921750 D 536056 CDS YP_006093546.1 386597146 12707281 3923950..3924153 1 NC_017625.1 PFAM: protein of unknown function DUF466; KEGG: sdy:SDY_4606 hypothetical protein; hypothetical protein 3924153 12707281 EcDH1_3644 Escherichia coli DH1 hypothetical protein YP_006093546.1 3923950 D 536056 CDS YP_006093547.1 386597147 12707282 3924164..3925120 1 NC_017625.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sbc:SbBS512_E4878 CobW/P47K family protein; cobalamin synthesis protein P47K 3925120 12707282 EcDH1_3645 Escherichia coli DH1 cobalamin synthesis protein P47K YP_006093547.1 3924164 D 536056 CDS YP_006093548.1 386597148 12707283 complement(3925166..3926080) 1 NC_017625.1 PFAM: restriction endonuclease; KEGG: ypb:YPTS_4095 restriction endonuclease; restriction endonuclease 3926080 12707283 EcDH1_3646 Escherichia coli DH1 restriction endonuclease YP_006093548.1 3925166 R 536056 CDS YP_006093549.1 386597149 12707285 3929981..3931570 1 NC_017625.1 PFAM: N-6 DNA methylase; KEGG: spq:SPAB_05694 hypothetical protein; N-6 DNA methylase 3931570 12707285 EcDH1_3648 Escherichia coli DH1 N-6 DNA methylase YP_006093549.1 3929981 D 536056 CDS YP_006093550.1 386597150 12707286 3931567..3932961 1 NC_017625.1 PFAM: restriction modification system DNA specificity domain; KEGG: sek:SSPA4034 subunit S of type I restriction-modification system; restriction modification system DNA specificity domain-containing protein 3932961 12707286 EcDH1_3649 Escherichia coli DH1 restriction modification system DNA specificity domain-containing protein YP_006093550.1 3931567 D 536056 CDS YP_006093551.1 386597151 12707287 3933189..3933530 1 NC_017625.1 PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: sfv:SFV_4364 endoribonuclease SymE; hypothetical protein 3933530 12707287 EcDH1_3650 Escherichia coli DH1 hypothetical protein YP_006093551.1 3933189 D 536056 CDS YP_006093552.1 386597152 12707288 3933674..3935071 1 NC_017625.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aba:Acid345_3754 ATPase associated with various cellular activities, AAA_5; ATPase 3935071 12707288 EcDH1_3651 Escherichia coli DH1 ATPase YP_006093552.1 3933674 D 536056 CDS YP_006093553.1 386597153 12707289 3935071..3936117 1 NC_017625.1 KEGG: aba:Acid345_3753 5-methylcytosine-specific restriction enzyme subunit McrC; 5-methylcytosine-specific restriction enzyme subunit McrC 3936117 12707289 EcDH1_3652 Escherichia coli DH1 5-methylcytosine-specific restriction enzyme subunit McrC YP_006093553.1 3935071 D 536056 CDS YP_006093554.1 386597154 12707290 complement(3936174..3938894) 1 NC_017625.1 KEGG: sek:SSPA4005 hypothetical protein; hypothetical protein 3938894 12707290 EcDH1_3653 Escherichia coli DH1 hypothetical protein YP_006093554.1 3936174 R 536056 CDS YP_006093555.1 386597155 12707291 complement(3939098..3940615) 1 NC_017625.1 KEGG: sek:SSPA4006 hypothetical protein; hypothetical protein 3940615 12707291 EcDH1_3654 Escherichia coli DH1 hypothetical protein YP_006093555.1 3939098 R 536056 CDS YP_006093556.1 386597156 12707292 complement(3941114..3941278) 1 NC_017625.1 PFAM: protein of unknown function DUF1127; KEGG: sdy:SDY_4602 hypothetical protein; hypothetical protein 3941278 12707292 EcDH1_3655 Escherichia coli DH1 hypothetical protein YP_006093556.1 3941114 R 536056 CDS YP_006093557.1 386597157 12707293 3941455..3942867 1 NC_017625.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: sdy:SDY_4601 putative regulator; DeoR family transcriptional regulator 3942867 12707293 EcDH1_3656 Escherichia coli DH1 DeoR family transcriptional regulator YP_006093557.1 3941455 D 536056 CDS YP_006093558.1 386597158 12707295 3944510..3945742 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4767 multidrug resistance protein MdtM; major facilitator superfamily protein 3945742 12707295 EcDH1_3658 Escherichia coli DH1 major facilitator superfamily protein YP_006093558.1 3944510 D 536056 CDS YP_006093559.1 386597159 12707296 3945783..3947063 1 NC_017625.1 PFAM: protein of unknown function DUF445; KEGG: sbc:SbBS512_E4768 putatitve membrane protein; hypothetical protein 3947063 12707296 EcDH1_3659 Escherichia coli DH1 hypothetical protein YP_006093559.1 3945783 D 536056 CDS YP_006093560.1 386597160 12707297 3947179..3948330 1 NC_017625.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cko:CKO_03458 hypothetical protein; 2-hydroxyglutaryl-CoA dehydratase subunit D 3948330 12707297 EcDH1_3660 Escherichia coli DH1 2-hydroxyglutaryl-CoA dehydratase subunit D YP_006093560.1 3947179 D 536056 CDS YP_006093561.1 386597161 12707298 3948340..3949107 1 NC_017625.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sbc:SbBS512_E4770 (R)-2-hydroxyglutaryl-CoA dehydratase activator; CoA-substrate-specific enzyme activase 3949107 12707298 EcDH1_3661 Escherichia coli DH1 CoA-substrate-specific enzyme activase YP_006093561.1 3948340 D 536056 CDS YP_006093562.1 386597162 12707299 3949104..3949361 1 NC_017625.1 KEGG: sbc:SbBS512_E4771 hypothetical protein; hypothetical protein 3949361 12707299 EcDH1_3662 Escherichia coli DH1 hypothetical protein YP_006093562.1 3949104 D 536056 CDS YP_006093563.1 386597163 12707300 3949315..3950286 1 NC_017625.1 PFAM: SdiA-regulated domain protein; KEGG: sbo:SBO_4384 hypothetical protein; SdiA-regulated domain-containing protein 3950286 12707300 EcDH1_3663 Escherichia coli DH1 SdiA-regulated domain-containing protein YP_006093563.1 3949315 D 536056 CDS YP_006093564.1 386597164 12707301 3950354..3951532 1 NC_017625.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4773 transporter, major facilitator family; hypothetical protein 3951532 12707301 EcDH1_3664 Escherichia coli DH1 hypothetical protein YP_006093564.1 3950354 D 536056 CDS YP_006093565.1 386597165 12707302 complement(3951545..3952099) 1 NC_017625.1 PFAM: phosphotransferase KptA/Tpt1; KEGG: sbc:SbBS512_E4774 RNA 2'-phosphotransferase; phosphate acetyltransferase 3952099 12707302 EcDH1_3665 Escherichia coli DH1 phosphate acetyltransferase YP_006093565.1 3951545 R 536056 CDS YP_006093566.1 386597166 12707303 3952349..3953032 1 NC_017625.1 PFAM: nucleoside recognition domain protein; KEGG: sbc:SbBS512_E4775 putative transporter; nucleoside recognition domain-containing protein 3953032 12707303 EcDH1_3666 Escherichia coli DH1 nucleoside recognition domain-containing protein YP_006093566.1 3952349 D 536056 CDS YP_006093567.1 386597167 12707304 3953029..3953490 1 NC_017625.1 PFAM: nucleoside recognition domain protein; KEGG: sbo:SBO_4380 hypothetical protein; nucleoside recognition domain-containing protein 3953490 12707304 EcDH1_3667 Escherichia coli DH1 nucleoside recognition domain-containing protein YP_006093567.1 3953029 D 536056 CDS YP_006093568.1 386597168 12707305 3953503..3954675 1 NC_017625.1 KEGG: sbc:SbBS512_E4777 beta-aspartyl peptidase; TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; Amidohydrolase 3; isoaspartyl dipeptidase 3954675 12707305 EcDH1_3668 Escherichia coli DH1 isoaspartyl dipeptidase YP_006093568.1 3953503 D 536056 CDS YP_006093569.1 386597169 12707306 3954740..3955651 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfv:SFV_4199 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 3955651 12707306 EcDH1_3669 Escherichia coli DH1 LysR family transcriptional regulator YP_006093569.1 3954740 D 536056 CDS YP_006093570.1 386597170 12707307 complement(3955644..3956036) 1 NC_017625.1 PFAM: GPW/gp25 family protein; KEGG: sbc:SbBS512_E4778 hypothetical protein; GPW/gp25 family protein 3956036 12707307 EcDH1_3670 Escherichia coli DH1 GPW/gp25 family protein YP_006093570.1 3955644 R 536056 CDS YP_006093571.1 386597171 12707308 complement(3956354..3956455) 1 NC_017625.1 hypothetical protein 3956455 12707308 EcDH1_3671 Escherichia coli DH1 hypothetical protein YP_006093571.1 3956354 R 536056 CDS YP_006093572.1 386597172 12707309 3956709..3957539 1 NC_017625.1 KEGG: ssn:SSON_4480 hypothetical protein; hypothetical protein 3957539 12707309 EcDH1_3672 Escherichia coli DH1 hypothetical protein YP_006093572.1 3956709 D 536056 CDS YP_006093573.1 386597173 12707310 complement(3957680..3958453) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbc:SbBS512_E4789 transcriptional regulator, GntR family; regulatory protein GntR HTH 3958453 12707310 EcDH1_3673 Escherichia coli DH1 regulatory protein GntR HTH YP_006093573.1 3957680 R 536056 CDS YP_006093574.1 386597174 12707311 complement(3958668..3960128) 1 NC_017625.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ssn:SSON_4478 D-mannonate oxidoreductase; mannitol dehydrogenase domain-containing protein 3960128 12707311 EcDH1_3674 Escherichia coli DH1 mannitol dehydrogenase domain-containing protein YP_006093574.1 3958668 R 536056 CDS YP_006093575.1 386597175 12707312 complement(3960209..3961393) 1 NC_017625.1 KEGG: sfv:SFV_4204 mannonate dehydratase; TIGRFAM: mannonate dehydratase; PFAM: Mannonate dehydratase; Xylose isomerase domain protein TIM barrel; mannonate dehydratase 3961393 12707312 EcDH1_3675 Escherichia coli DH1 mannonate dehydratase YP_006093575.1 3960209 R 536056 CDS YP_006093576.1 386597176 12707313 3961733..3963076 1 NC_017625.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: sfv:SFV_4205 fructuronate transporter; gluconate transporter 3963076 12707313 EcDH1_3676 Escherichia coli DH1 gluconate transporter YP_006093576.1 3961733 D 536056 CDS YP_006093577.1 386597177 12707314 complement(3963319..3964221) 1 NC_017625.1 PFAM: Fimbrial protein; FimH mannose-binding domain protein; KEGG: sfv:SFV_4206 FimH protein precursor; FimH mannose-binding domain protein 3964221 12707314 EcDH1_3677 Escherichia coli DH1 FimH mannose-binding domain protein YP_006093577.1 3963319 R 536056 CDS YP_006093578.1 386597178 12707315 complement(3964241..3964744) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sfv:SFV_4207 minor fimbrial subunit, precursor polypeptide; Fimbrial protein 3964744 12707315 EcDH1_3678 Escherichia coli DH1 Fimbrial protein YP_006093578.1 3964241 R 536056 CDS YP_006093579.1 386597179 12707316 complement(3964757..3965287) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sbo:SBO_4368 fimbrial morphology; Fimbrial protein 3965287 12707316 EcDH1_3679 Escherichia coli DH1 Fimbrial protein YP_006093579.1 3964757 R 536056 CDS YP_006093580.1 386597180 12707317 complement(3965297..3967933) 1 NC_017625.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfv:SFV_4209 outer membrane usher protein FimD precursor; fimbrial biogenesis outer membrane usher protein 3967933 12707317 EcDH1_3680 Escherichia coli DH1 fimbrial biogenesis outer membrane usher protein YP_006093580.1 3965297 R 536056 CDS YP_006093581.1 386597181 12707318 complement(3968000..3968725) 1 NC_017625.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sfx:S4463 periplasmic chaperone; Pili assembly chaperone, N-terminal 3968725 12707318 EcDH1_3681 Escherichia coli DH1 Pili assembly chaperone, N-terminal YP_006093581.1 3968000 R 536056 CDS YP_006093582.1 386597182 12707319 complement(3968762..3969301) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sfx:S4464 fimbrial protein; Fimbrial protein 3969301 12707319 EcDH1_3682 Escherichia coli DH1 Fimbrial protein YP_006093582.1 3968762 R 536056 CDS YP_006093583.1 386597183 12707320 complement(3969366..3969914) 1 NC_017625.1 PFAM: Fimbrial protein; KEGG: sbo:SBO_4364 major type 1 subunit fimbrin; Fimbrial protein 3969914 12707320 EcDH1_3683 Escherichia coli DH1 Fimbrial protein YP_006093583.1 3969366 R 536056 CDS YP_006093584.1 386597184 12707321 complement(3970396..3970947) 1 NC_017625.1 PFAM: integrase family protein; KEGG: sfv:SFV_4214 tyrosine recombinase; integrase family protein 3970947 12707321 EcDH1_3684 Escherichia coli DH1 integrase family protein YP_006093584.1 3970396 R 536056 CDS YP_006093585.1 386597185 12707323 complement(3972246..3972848) 1 NC_017625.1 PFAM: integrase family protein; KEGG: sbo:SBO_4362 tyrosine recombinase/inversion of on/off regulator of FimA; integrase family protein 3972848 12707323 EcDH1_3686 Escherichia coli DH1 integrase family protein YP_006093585.1 3972246 R 536056 CDS YP_006093586.1 386597186 12707324 3974304..3975020 1 NC_017625.1 PFAM: Oligogalacturonate-specific porin; KEGG: ssn:SSON_4473 hypothetical protein; Oligogalacturonate-specific porin 3975020 12707324 EcDH1_3687 Escherichia coli DH1 Oligogalacturonate-specific porin YP_006093586.1 3974304 D 536056 CDS YP_006093587.1 386597187 12707325 3975040..3976146 1 NC_017625.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: sfv:SFV_4217 hypothetical protein; Kelch repeat-containing protein 3976146 12707325 EcDH1_3688 Escherichia coli DH1 Kelch repeat-containing protein YP_006093587.1 3975040 D 536056 CDS YP_006093588.1 386597188 12707326 3976211..3977191 1 NC_017625.1 PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: sfv:SFV_4218 hypothetical protein; hypothetical protein 3977191 12707326 EcDH1_3689 Escherichia coli DH1 hypothetical protein YP_006093588.1 3976211 D 536056 CDS YP_006093589.1 386597189 12707328 3979752..3980009 1 NC_017625.1 KEGG: kpn:KPN_00259 putative xanthine dehydrogenase, Fe-S subunit; putative xanthine dehydrogenase, Fe-S subunit 3980009 12707328 EcDH1_3691 Escherichia coli DH1 putative xanthine dehydrogenase, Fe-S subunit YP_006093589.1 3979752 D 536056 CDS YP_006093590.1 386597190 12707329 3980021..3980566 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bth:BT_0758 acetyltransferase; N-acetyltransferase GCN5 3980566 12707329 EcDH1_3692 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006093590.1 3980021 D 536056 CDS YP_006093591.1 386597191 12707330 3980622..3981368 1 NC_017625.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: kpe:KPK_4969 methyltransferase family protein; type 11 methyltransferase 3981368 12707330 EcDH1_3693 Escherichia coli DH1 type 11 methyltransferase YP_006093591.1 3980622 D 536056 CDS YP_006093592.1 386597192 12707331 3982154..3983275 1 NC_017625.1 PFAM: peptidase M42 family protein; KEGG: stm:STM1612 putative cellulase protein; peptidase M42 family protein 3983275 12707331 EcDH1_3694 Escherichia coli DH1 peptidase M42 family protein YP_006093592.1 3982154 D 536056 CDS YP_006093593.1 386597193 12707332 3983272..3983550 1 NC_017625.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: stm:STM1613 putative PTS system enzymeIIB component; PTS system lactose/cellobiose-specific transporter subunit IIB 3983550 12707332 EcDH1_3695 Escherichia coli DH1 PTS system lactose/cellobiose-specific transporter subunit IIB YP_006093593.1 3983272 D 536056 CDS YP_006093594.1 386597194 12707333 3983562..3984875 1 NC_017625.1 TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component; KEGG: stm:STM1614 putative PTS system enzyme IIC component; PTS system galactitol-specific transporter subunit IIC 3984875 12707333 EcDH1_3696 Escherichia coli DH1 PTS system galactitol-specific transporter subunit IIC YP_006093594.1 3983562 D 536056 CDS YP_006093595.1 386597195 12707334 3984888..3985694 1 NC_017625.1 PFAM: photosystem I assembly BtpA; KEGG: stm:STM1615 putative nucleoside triphosphatase; photosystem I assembly BtpA 3985694 12707334 EcDH1_3697 Escherichia coli DH1 photosystem I assembly BtpA YP_006093595.1 3984888 D 536056 CDS YP_006093596.1 386597196 12707335 3985825..3986256 1 NC_017625.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: stm:STM1616 putative sugar-specific PTS enzyme II; putative PTS IIA-like nitrogen-regulatory protein PtsN 3986256 12707335 EcDH1_3698 Escherichia coli DH1 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_006093596.1 3985825 D 536056 CDS YP_006093597.1 386597197 12707336 3986268..3986900 1 NC_017625.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: sew:SeSA_A1734 protein SgcE; Ribulose-phosphate 3-epimerase 3986900 12707336 EcDH1_3699 Escherichia coli DH1 Ribulose-phosphate 3-epimerase YP_006093597.1 3986268 D 536056 CDS YP_006093598.1 386597198 12707337 3986917..3987699 1 NC_017625.1 PFAM: regulatory protein DeoR; KEGG: set:SEN1438 putative regulatory protein; DeoR family transcriptional regulator 3987699 12707337 EcDH1_3700 Escherichia coli DH1 DeoR family transcriptional regulator YP_006093598.1 3986917 D 536056 CDS YP_006093599.1 386597199 12707338 3988002..3988790 1 NC_017625.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sec:SC3463 putative transcriptional regulator; IclR family transcriptional regulator 3988790 12707338 EcDH1_3701 Escherichia coli DH1 IclR family transcriptional regulator YP_006093599.1 3988002 D 536056 CDS YP_006093600.1 386597200 12707339 3988795..3989700 1 NC_017625.1 PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3989700 12707339 EcDH1_3702 Escherichia coli DH1 dihydrodipicolinate synthetase YP_006093600.1 3988795 D 536056 CDS YP_006093601.1 386597201 12707340 3989711..3991678 1 NC_017625.1 KEGG: bcl:ABC1110 hypothetical protein; TIGRFAM: dehydratase, YjhG/YagF family; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dehydratase, YjhG/YagF family 3991678 12707340 EcDH1_3703 Escherichia coli DH1 dehydratase, YjhG/YagF family YP_006093601.1 3989711 D 536056 CDS YP_006093602.1 386597202 12707341 3991785..3993134 1 NC_017625.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: esi:Exig_2997 gluconate transporter; gluconate transporter 3993134 12707341 EcDH1_3704 Escherichia coli DH1 gluconate transporter YP_006093602.1 3991785 D 536056 CDS YP_006093603.1 386597203 12707342 3993481..3994467 1 NC_017625.1 PFAM: putative sugar-binding domain protein; KEGG: pmr:PMI1540 transcriptional regulator; DeoR family transcriptional regulator 3994467 12707342 EcDH1_3705 Escherichia coli DH1 DeoR family transcriptional regulator YP_006093603.1 3993481 D 536056 CDS YP_006093604.1 386597204 12707344 3995570..3996091 1 NC_017625.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ssn:SSON_4465 RNA polymerase sigma factor FecI; ECF subfamily RNA polymerase sigma-24 subunit 3996091 12707344 EcDH1_3707 Escherichia coli DH1 ECF subfamily RNA polymerase sigma-24 subunit YP_006093604.1 3995570 D 536056 CDS YP_006093605.1 386597205 12707345 3996088..3997041 1 NC_017625.1 PFAM: FecR protein; KEGG: ssn:SSON_4464 regulator for fec operon FecR; anti-FecI sigma factor FecR 3997041 12707345 EcDH1_3708 Escherichia coli DH1 anti-FecI sigma factor FecR YP_006093605.1 3996088 D 536056 CDS YP_006093606.1 386597206 12707346 3997128..3999452 1 NC_017625.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: sdy:SDY_4297 citrate-dependent iron transport, outer membrane receptor; TonB-dependent siderophore receptor 3999452 12707346 EcDH1_3709 Escherichia coli DH1 TonB-dependent siderophore receptor YP_006093606.1 3997128 D 536056 CDS YP_006093607.1 386597207 12707347 3999497..4000399 1 NC_017625.1 PFAM: periplasmic binding protein; KEGG: ssn:SSON_4462 iron-dicitrate transporter substrate-binding subunit; periplasmic binding protein 4000399 12707347 EcDH1_3710 Escherichia coli DH1 periplasmic binding protein YP_006093607.1 3999497 D 536056 CDS YP_006093608.1 386597208 12707348 4000396..4001394 1 NC_017625.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: ssn:SSON_4461 iron-dicitrate transporter permease subunit; transport system permease 4001394 12707348 EcDH1_3711 Escherichia coli DH1 transport system permease YP_006093608.1 4000396 D 536056 CDS YP_006093609.1 386597209 12707349 4001391..4002347 1 NC_017625.1 PFAM: transport system permease protein; KEGG: sdy:SDY_4294 iron-dicitrate transporter subunit FecD; transport system permease 4002347 12707349 EcDH1_3712 Escherichia coli DH1 transport system permease YP_006093609.1 4001391 D 536056 CDS YP_006093610.1 386597210 12707350 4002348..4003115 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_4459 iron-dicitrate transporter ATP-binding subunit; ABC transporter 4003115 12707350 EcDH1_3713 Escherichia coli DH1 ABC transporter YP_006093610.1 4002348 D 536056 CDS YP_006093611.1 386597211 12707353 4004863..4005231 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfl:SF1439 IS600 ORF1; transposase IS3/IS911 family protein 4005231 12707353 EcDH1_3716 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006093611.1 4004863 D 536056 CDS YP_006093612.1 386597212 12707354 4005188..4006339 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: bac:BamMC406_6641 integrase catalytic region; integrase catalytic subunit 4006339 12707354 EcDH1_3717 Escherichia coli DH1 integrase catalytic subunit YP_006093612.1 4005188 D 536056 CDS YP_006093613.1 386597213 12707355 complement(4006342..4006608) 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sbc:SbBS512_A0303 IS911, transposase orfA; transposase IS3/IS911 family protein 4006608 12707355 EcDH1_3718 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006093613.1 4006342 R 536056 CDS YP_006093614.1 386597214 12707356 4006829..4007179 1 NC_017625.1 KEGG: ent:Ent638_1538 putative lipoprotein; hypothetical protein 4007179 12707356 EcDH1_3719 Escherichia coli DH1 hypothetical protein YP_006093614.1 4006829 D 536056 CDS YP_006093615.1 386597215 12707357 complement(4007232..4007357) 1 NC_017625.1 hypothetical protein 4007357 12707357 EcDH1_3720 Escherichia coli DH1 hypothetical protein YP_006093615.1 4007232 R 536056 CDS YP_006093616.1 386597216 12707358 complement(4007400..4008518) 1 NC_017625.1 PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: pmu:PM1759 hypothetical protein; oxidoreductase domain-containing protein 4008518 12707358 EcDH1_3721 Escherichia coli DH1 oxidoreductase domain-containing protein YP_006093616.1 4007400 R 536056 CDS YP_006093617.1 386597217 12707359 complement(4008530..4009747) 1 NC_017625.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ses:SARI_01868 putative sialic acid transporter; general substrate transporter 4009747 12707359 EcDH1_3722 Escherichia coli DH1 general substrate transporter YP_006093617.1 4008530 R 536056 CDS YP_006093618.1 386597218 12707360 4010374..4011702 1 NC_017625.1 PFAM: transposase IS4 family protein; KEGG: ssn:SSON_P173 IS4 ORF; transposase IS4 family protein 4011702 12707360 EcDH1_3723 Escherichia coli DH1 transposase IS4 family protein YP_006093618.1 4010374 D 536056 CDS YP_006093619.1 386597219 12707362 complement(4014305..4015210) 1 NC_017625.1 PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 4015210 12707362 EcDH1_3725 Escherichia coli DH1 integrase catalytic subunit YP_006093619.1 4014305 R 536056 CDS YP_006093620.1 386597220 12707363 complement(4015168..4015533) 1 NC_017625.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 4015533 12707363 EcDH1_3726 Escherichia coli DH1 transposase IS3/IS911 family protein YP_006093620.1 4015168 R 536056 CDS YP_006093621.1 386597221 12707364 complement(4015865..4017055) 1 NC_017625.1 PFAM: integrase family protein; KEGG: ent:Ent638_0463 phage integrase family protein; integrase family protein 4017055 12707364 EcDH1_3727 Escherichia coli DH1 integrase family protein YP_006093621.1 4015865 R 536056 CDS YP_006093622.1 386597222 12707366 4017596..4018615 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfv:SFV_4229 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein 4018615 12707366 EcDH1_3728 Escherichia coli DH1 alcohol dehydrogenase GroES domain-containing protein YP_006093622.1 4017596 D 536056 CDS YP_006093623.1 386597223 12707367 complement(4018619..4019182) 1 NC_017625.1 KEGG: ssn:SSON_4453 D-gluconate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 4019182 12707367 EcDH1_3729 Escherichia coli DH1 thermoresistant glucokinase family carbohydrate kinase YP_006093623.1 4018619 R 536056 CDS YP_006093624.1 386597224 12707368 4019399..4020430 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_4452 L-idonate 5-dehydrogenase, NAD-binding; alcohol dehydrogenase 4020430 12707368 EcDH1_3730 Escherichia coli DH1 alcohol dehydrogenase YP_006093624.1 4019399 D 536056 CDS YP_006093625.1 386597225 12707369 4020454..4021218 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssn:SSON_4451 gluconate 5-dehydrogenase; short-chain dehydrogenase/reductase SDR 4021218 12707369 EcDH1_3731 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006093625.1 4020454 D 536056 CDS YP_006093626.1 386597226 12707370 4021280..4022599 1 NC_017625.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ssn:SSON_4450 L-idonate transporter; gluconate transporter 4022599 12707370 EcDH1_3732 Escherichia coli DH1 gluconate transporter YP_006093626.1 4021280 D 536056 CDS YP_006093627.1 386597227 12707371 4022666..4023664 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_4449 L-idonate transcriptional regulator; LacI family transcriptional regulator 4023664 12707371 EcDH1_3733 Escherichia coli DH1 LacI family transcriptional regulator YP_006093627.1 4022666 D 536056 CDS YP_006093628.1 386597228 12707372 4023742..4025244 1 NC_017625.1 PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: ssn:SSON_4448 hypothetical protein; hypothetical protein 4025244 12707372 EcDH1_3734 Escherichia coli DH1 hypothetical protein YP_006093628.1 4023742 D 536056 CDS YP_006093629.1 386597229 12707373 complement(4025405..4026487) 1 NC_017625.1 PFAM: permease YjgP/YjgQ family protein; KEGG: sdy:SDY_4286 hypothetical protein; YjgP/YjgQ family permease 4026487 12707373 EcDH1_3735 Escherichia coli DH1 YjgP/YjgQ family permease YP_006093629.1 4025405 R 536056 CDS YP_006093630.1 386597230 12707374 complement(4026487..4027566) 1 NC_017625.1 PFAM: permease YjgP/YjgQ family protein; KEGG: sbo:SBO_4179 hypothetical protein; YjgP/YjgQ family permease 4027566 12707374 EcDH1_3736 Escherichia coli DH1 YjgP/YjgQ family permease YP_006093630.1 4026487 R 536056 CDS YP_006093631.1 386597231 12707375 4027854..4029365 1 NC_017625.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ssn:SSON_4445 leucyl aminopeptidase; leucyl aminopeptidase 4029365 12707375 EcDH1_3737 Escherichia coli DH1 leucyl aminopeptidase YP_006093631.1 4027854 D 536056 CDS YP_006093632.1 386597232 12707376 4029525..4029968 1 NC_017625.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: sdy:SDY_4283 DNA polymerase III subunit chi; DNA-directed DNA polymerase 4029968 12707376 EcDH1_3738 Escherichia coli DH1 DNA-directed DNA polymerase YP_006093632.1 4029525 D 536056 CDS YP_006093633.1 386597233 12707377 4029968..4032823 1 NC_017625.1 TIGRFAM: valyl-tRNA synthetase; KEGG: sbo:SBO_4182 valyl-tRNA synthetase; valyl-tRNA synthetase 4032823 12707377 EcDH1_3739 Escherichia coli DH1 valyl-tRNA synthetase YP_006093633.1 4029968 D 536056 CDS YP_006093634.1 386597234 12707378 complement(4032879..4034075) 1 NC_017625.1 PFAM: protein of unknown function DUF898 transmembrane; KEGG: sfx:S4493 hypothetical protein; hypothetical protein 4034075 12707378 EcDH1_3740 Escherichia coli DH1 hypothetical protein YP_006093634.1 4032879 R 536056 CDS YP_006093635.1 386597235 12707379 4034268..4034771 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfl:SF4233 hypothetical protein; N-acetyltransferase GCN5 4034771 12707379 EcDH1_3741 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006093635.1 4034268 D 536056 CDS YP_006093636.1 386597236 12707380 complement(4034916..4035332) 1 NC_017625.1 PFAM: protein of unknown function DUF1260; KEGG: sdy:SDY_4277 hypothetical protein; hypothetical protein 4035332 12707380 EcDH1_3742 Escherichia coli DH1 hypothetical protein YP_006093636.1 4034916 R 536056 CDS YP_006093637.1 386597237 12707381 4035494..4036498 1 NC_017625.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: sfx:S4496 ornithine carbamoyltransferase subunit I; ornithine carbamoyltransferase 4036498 12707381 EcDH1_3743 Escherichia coli DH1 ornithine carbamoyltransferase YP_006093637.1 4035494 D 536056 CDS YP_006093638.1 386597238 12707382 complement(4036554..4038368) 1 NC_017625.1 KEGG: sbo:SBO_4194 hypothetical protein; hypothetical protein 4038368 12707382 EcDH1_3744 Escherichia coli DH1 hypothetical protein YP_006093638.1 4036554 R 536056 CDS YP_006093639.1 386597239 12707383 complement(4038491..4038943) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sfv:SFV_4243 hypothetical protein; hypothetical protein 4038943 12707383 EcDH1_3745 Escherichia coli DH1 hypothetical protein YP_006093639.1 4038491 R 536056 CDS YP_006093640.1 386597240 12707384 complement(4039088..4039681) 1 NC_017625.1 PFAM: regulatory protein TetR; KEGG: sfv:SFV_4244 hypothetical protein; TetR family transcriptional regulator 4039681 12707384 EcDH1_3746 Escherichia coli DH1 TetR family transcriptional regulator YP_006093640.1 4039088 R 536056 CDS YP_006093641.1 386597241 12707385 4039752..4040465 1 NC_017625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sfv:SFV_4245 oxidoreductase; short-chain dehydrogenase/reductase SDR 4040465 12707385 EcDH1_3747 Escherichia coli DH1 short-chain dehydrogenase/reductase SDR YP_006093641.1 4039752 D 536056 CDS YP_006093642.1 386597242 12707386 4040596..4040991 1 NC_017625.1 PFAM: Endoribonuclease L-PSP; KEGG: ssn:SSON_4428 hypothetical protein; endoribonuclease L-PSP 4040991 12707386 EcDH1_3748 Escherichia coli DH1 endoribonuclease L-PSP YP_006093642.1 4040596 D 536056 CDS YP_006093643.1 386597243 12707387 4041410..4042345 1 NC_017625.1 KEGG: sdy:SDY_4264 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate carbamoyltransferase 4042345 12707387 EcDH1_3749 Escherichia coli DH1 aspartate carbamoyltransferase YP_006093643.1 4041410 D 536056 CDS YP_006093644.1 386597244 12707388 4042358..4042819 1 NC_017625.1 TIGRFAM: aspartate carbamoyltransferase, regulatory subunit; PFAM: aspartate transcarbamylase regulatory subunit; KEGG: sbc:SbBS512_E4839 aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase, regulatory subunit 4042819 12707388 EcDH1_3750 Escherichia coli DH1 aspartate carbamoyltransferase, regulatory subunit YP_006093644.1 4042358 D 536056 CDS YP_006093645.1 386597245 12707389 4042892..4043278 1 NC_017625.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: sdy:SDY_4262 hypothetical protein; endoribonuclease L-PSP 4043278 12707389 EcDH1_3751 Escherichia coli DH1 endoribonuclease L-PSP YP_006093645.1 4042892 D 536056 CDS YP_006093646.1 386597246 12707390 complement(4043484..4046180) 1 NC_017625.1 KEGG: ssn:SSON_4423 magnesium-transporting ATPase MgtA; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; magnesium-translocating P-type ATPase 4046180 12707390 EcDH1_3752 Escherichia coli DH1 magnesium-translocating P-type ATPase YP_006093646.1 4043484 R 536056 CDS YP_006093647.1 386597247 12707391 4046559..4047506 1 NC_017625.1 TIGRFAM: trehalose operon repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_4422 trehalose repressor; LacI family transcriptional regulator 4047506 12707391 EcDH1_3753 Escherichia coli DH1 LacI family transcriptional regulator YP_006093647.1 4046559 D 536056 CDS YP_006093648.1 386597248 12707392 4047625..4049046 1 NC_017625.1 TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, trehalose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: ssn:SSON_4421 trehalose(maltose)-specific PTS system components IIBC; PTS system trehalose-specific transporter subunit IIBC 4049046 12707392 EcDH1_3754 Escherichia coli DH1 PTS system trehalose-specific transporter subunit IIBC YP_006093648.1 4047625 D 536056 CDS YP_006093649.1 386597249 12707393 4049096..4050751 1 NC_017625.1 KEGG: sfx:S4513 trehalose-6-phosphate hydrolase; TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; alpha,alpha-phosphotrehalase 4050751 12707393 EcDH1_3755 Escherichia coli DH1 alpha,alpha-phosphotrehalase YP_006093649.1 4049096 D 536056 CDS YP_006093650.1 386597250 12707394 4051145..4053283 1 NC_017625.1 KEGG: sbc:SbBS512_E4846 anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase 4053283 12707394 EcDH1_3756 Escherichia coli DH1 anaerobic ribonucleoside-triphosphate reductase YP_006093650.1 4051145 D 536056 CDS YP_006093651.1 386597251 12707395 4053441..4053905 1 NC_017625.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: sdy:SDY_4256 anaerobic ribonucleotide reductase-activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 4053905 12707395 EcDH1_3757 Escherichia coli DH1 anaerobic ribonucleoside-triphosphate reductase activating protein YP_006093651.1 4053441 D 536056 CDS YP_006093652.1 386597252 12707396 complement(4053950..4054252) 1 NC_017625.1 PFAM: cytochrome b562; KEGG: sfv:SFV_4255 cytochrome b(562); cytochrome b562 4054252 12707396 EcDH1_3758 Escherichia coli DH1 cytochrome b562 YP_006093652.1 4053950 R 536056 CDS YP_006093653.1 386597253 12707397 complement(4054494..4055846) 1 NC_017625.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sdy:SDY_4253 peptidase PmbA; peptidase U62 modulator of DNA gyrase 4055846 12707397 EcDH1_3759 Escherichia coli DH1 peptidase U62 modulator of DNA gyrase YP_006093653.1 4054494 R 536056 CDS YP_006093654.1 386597254 12707398 4055940..4056491 1 NC_017625.1 PFAM: protein of unknown function DUF615; KEGG: ssn:SSON_4415 hypothetical protein; hypothetical protein 4056491 12707398 EcDH1_3760 Escherichia coli DH1 hypothetical protein YP_006093654.1 4055940 D 536056 CDS YP_006093655.1 386597255 12707399 complement(4056647..4058020) 1 NC_017625.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfx:S4519 putative ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4058020 12707399 EcDH1_3761 Escherichia coli DH1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_006093655.1 4056647 R 536056 CDS YP_006093656.1 386597256 12707400 4058196..4059194 1 NC_017625.1 PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: sdy:SDY_4250 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase 4059194 12707400 EcDH1_3762 Escherichia coli DH1 inositol phosphatase/fructose-16-bisphosphatase YP_006093656.1 4058196 D 536056 CDS YP_006093657.1 386597257 12707401 complement(4059227..4060222) 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E4853 putative sugar ABC transporter, permease protein; monosaccharide-transporting ATPase 4060222 12707401 EcDH1_3763 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006093657.1 4059227 R 536056 CDS YP_006093658.1 386597258 12707402 complement(4060209..4061231) 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: ssn:SSON_4411 putative transport system permease protein; monosaccharide-transporting ATPase 4061231 12707402 EcDH1_3764 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006093658.1 4060209 R 536056 CDS YP_006093659.1 386597259 12707403 complement(4061245..4062747) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_4410 putative ATP-binding component of a transport system; ABC transporter 4062747 12707403 EcDH1_3765 Escherichia coli DH1 ABC transporter YP_006093659.1 4061245 R 536056 CDS YP_006093660.1 386597260 12707404 complement(4062887..4063843) 1 NC_017625.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E4856 putative sugar ABC transporter, periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 4063843 12707404 EcDH1_3766 Escherichia coli DH1 periplasmic binding protein/LacI transcriptional regulator YP_006093660.1 4062887 R 536056 CDS YP_006093661.1 386597261 12707405 4064153..4064683 1 NC_017625.1 PFAM: Inorganic pyrophosphatase; KEGG: sdy:SDY_4462 inorganic pyrophosphatase; inorganic diphosphatase 4064683 12707405 EcDH1_3767 Escherichia coli DH1 inorganic diphosphatase YP_006093661.1 4064153 D 536056 CDS YP_006093662.1 386597262 12707406 complement(4064763..4065077) 1 NC_017625.1 PFAM: PemK family protein; KEGG: sdy:SDY_4461 toxin ChpB; transcriptional modulator of MazE/toxin MazF 4065077 12707406 EcDH1_3768 Escherichia coli DH1 transcriptional modulator of MazE/toxin MazF YP_006093662.1 4064763 R 536056 CDS YP_006093663.1 386597263 12707407 complement(4065107..4065358) 1 NC_017625.1 PFAM: SpoVT/AbrB domain protein; KEGG: sdy:SDY_4460 antitoxin ChpS; transcriptional regulator/antitoxin MazE 4065358 12707407 EcDH1_3769 Escherichia coli DH1 transcriptional regulator/antitoxin MazE YP_006093663.1 4065107 R 536056 CDS YP_006093664.1 386597264 12707408 complement(4065570..4065911) 1 NC_017625.1 PFAM: AIG2 family protein; KEGG: sdy:SDY_4459 hypothetical protein; AIG2 family protein 4065911 12707408 EcDH1_3770 Escherichia coli DH1 AIG2 family protein YP_006093664.1 4065570 R 536056 CDS YP_006093665.1 386597265 12707409 complement(4065914..4069693) 1 NC_017625.1 PFAM: protein of unknown function DUF490; KEGG: ssn:SSON_4406 hypothetical protein; hypothetical protein 4069693 12707409 EcDH1_3771 Escherichia coli DH1 hypothetical protein YP_006093665.1 4065914 R 536056 CDS YP_006093666.1 386597266 12707410 complement(4069690..4071423) 1 NC_017625.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: sbc:SbBS512_E4861 outer membrane protein, OMP85 family; surface antigen (D15) 4071423 12707410 EcDH1_3772 Escherichia coli DH1 surface antigen (D15) YP_006093666.1 4069690 R 536056 CDS YP_006093667.1 386597267 12707411 4071629..4072267 1 NC_017625.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: ssn:SSON_4404 methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 4072267 12707411 EcDH1_3773 Escherichia coli DH1 peptide methionine sulfoxide reductase YP_006093667.1 4071629 D 536056 CDS YP_006093668.1 386597268 12707412 4072590..4073933 1 NC_017625.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sdy:SDY_4455 putative transport protein; hypothetical protein 4073933 12707412 EcDH1_3774 Escherichia coli DH1 hypothetical protein YP_006093668.1 4072590 D 536056 CDS YP_006093669.1 386597269 12707413 complement(4074012..4074218) 1 NC_017625.1 PFAM: protein of unknown function DUF1107; KEGG: sdy:SDY_4454 hypothetical protein; hypothetical protein 4074218 12707413 EcDH1_3775 Escherichia coli DH1 hypothetical protein YP_006093669.1 4074012 R 536056 CDS YP_006093670.1 386597270 12707414 4074543..4075097 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sdy:SDY_4453 hypothetical protein; hypothetical protein 4075097 12707414 EcDH1_3776 Escherichia coli DH1 hypothetical protein YP_006093670.1 4074543 D 536056 CDS YP_006093671.1 386597271 12707415 complement(4075160..4076098) 1 NC_017625.1 KEGG: sfv:SFV_4272 hypothetical protein; hypothetical protein 4076098 12707415 EcDH1_3777 Escherichia coli DH1 hypothetical protein YP_006093671.1 4075160 R 536056 CDS YP_006093672.1 386597272 12707416 complement(4076310..4077050) 1 NC_017625.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sdy:SDY_4385 PapS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 4077050 12707416 EcDH1_3778 Escherichia coli DH1 3'(2'),5'-bisphosphate nucleotidase YP_006093672.1 4076310 R 536056 CDS YP_006093673.1 386597273 12707419 complement(4080088..4080468) 1 NC_017625.1 PFAM: helix-turn-helix HxlR type; KEGG: sbc:SbBS512_E4753 putative transcriptional regulator; HxlR family transcriptional regulator 4080468 12707419 EcDH1_3781 Escherichia coli DH1 HxlR family transcriptional regulator YP_006093673.1 4080088 R 536056 CDS YP_006093674.1 386597274 12707420 4080557..4081417 1 NC_017625.1 PFAM: NmrA family protein; KEGG: sbo:SBO_4231 putative oxidoreductase; NmrA family protein 4081417 12707420 EcDH1_3782 Escherichia coli DH1 NmrA family protein YP_006093674.1 4080557 D 536056 CDS YP_006093675.1 386597275 12707421 4081525..4082490 1 NC_017625.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ssn:SSON_4395 putative transmembrane subunit; hypothetical protein 4082490 12707421 EcDH1_3783 Escherichia coli DH1 hypothetical protein YP_006093675.1 4081525 D 536056 CDS YP_006093676.1 386597276 12707422 4082598..4083260 1 NC_017625.1 PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: sdy:SDY_4379 cell morphogenesis/cell wall metabolism regulator; hypothetical protein 4083260 12707422 EcDH1_3784 Escherichia coli DH1 hypothetical protein YP_006093676.1 4082598 D 536056 CDS YP_006093677.1 386597277 12707423 complement(4083305..4084717) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_4378 D-alanine/D-serine/glycine permease; amino acid permease 4084717 12707423 EcDH1_3785 Escherichia coli DH1 amino acid permease YP_006093677.1 4083305 R 536056 CDS YP_006093678.1 386597278 12707424 complement(4085026..4085646) 1 NC_017625.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: sfv:SFV_4280 peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 4085646 12707424 EcDH1_3786 Escherichia coli DH1 FKBP-type peptidylprolyl isomerase YP_006093678.1 4085026 R 536056 CDS YP_006093679.1 386597279 12707425 4085864..4086502 1 NC_017625.1 PFAM: Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: sdy:SDY_4376 hypothetical protein; Opacity-associated protein A 4086502 12707425 EcDH1_3787 Escherichia coli DH1 Opacity-associated protein A YP_006093679.1 4085864 D 536056 CDS YP_006093680.1 386597280 12707427 4087159..4087953 1 NC_017625.1 KEGG: sbc:SbBS512_E4737 hypothetical protein; hypothetical protein 4087953 12707427 EcDH1_3789 Escherichia coli DH1 hypothetical protein YP_006093680.1 4087159 D 536056 CDS YP_006093681.1 386597281 12707428 complement(4088024..4088473) 1 NC_017625.1 PFAM: ribosomal protein L9; KEGG: sbc:SbBS512_E4736 ribosomal protein L9; 50S ribosomal protein L9 4088473 12707428 EcDH1_3790 Escherichia coli DH1 50S ribosomal protein L9 YP_006093681.1 4088024 R 536056 CDS YP_006093682.1 386597282 12707429 complement(4088515..4088742) 1 NC_017625.1 PFAM: ribosomal protein S18; KEGG: kpn:KPN_04596 30S ribosomal protein S18; 30S ribosomal protein S18 4088742 12707429 EcDH1_3791 Escherichia coli DH1 30S ribosomal protein S18 YP_006093682.1 4088515 R 536056 CDS YP_006093683.1 386597283 12707430 complement(4088747..4089061) 1 NC_017625.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sbc:SbBS512_E4734 primosomal replication protein N; ssDNA-binding protein 4089061 12707430 EcDH1_3792 Escherichia coli DH1 ssDNA-binding protein YP_006093683.1 4088747 R 536056 CDS YP_006093684.1 386597284 12707431 complement(4089068..4089463) 1 NC_017625.1 PFAM: ribosomal protein S6; KEGG: sdy:SDY_4369 30S ribosomal protein S6; 30S ribosomal protein S6 4089463 12707431 EcDH1_3793 Escherichia coli DH1 30S ribosomal protein S6 YP_006093684.1 4089068 R 536056 CDS YP_006093685.1 386597285 12707432 4089790..4090065 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E4732 hypothetical protein; hypothetical protein 4090065 12707432 EcDH1_3794 Escherichia coli DH1 hypothetical protein YP_006093685.1 4089790 D 536056 CDS YP_006093686.1 386597286 12707433 complement(4090195..4090881) 1 NC_017625.1 PFAM: class II aldolase/adducin family protein; KEGG: sfv:SFV_4354 L-ribulose-5-phosphate 4-epimerase; class II aldolase/adducin family protein 4090881 12707433 EcDH1_3795 Escherichia coli DH1 class II aldolase/adducin family protein YP_006093686.1 4090195 R 536056 CDS YP_006093687.1 386597287 12707434 complement(4090881..4091735) 1 NC_017625.1 KEGG: sbo:SBO_4258 L-xylulose 5-phosphate 3-epimerase; TIGRFAM: hexulose-6-phosphate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hexulose-6-phosphate isomerase 4091735 12707434 EcDH1_3796 Escherichia coli DH1 hexulose-6-phosphate isomerase YP_006093687.1 4090881 R 536056 CDS YP_006093688.1 386597288 12707435 complement(4091745..4092395) 1 NC_017625.1 PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sdy:SDY_4365 3-keto-L-gulonate-6-phosphate decarboxylase; 3-dehydro-L-gulonate-6-phosphate decarboxylase 4092395 12707435 EcDH1_3797 Escherichia coli DH1 3-dehydro-L-gulonate-6-phosphate decarboxylase YP_006093688.1 4091745 R 536056 CDS YP_006093689.1 386597289 12707436 complement(4092409..4092873) 1 NC_017625.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sdy:SDY_4364 L-ascorbate-specific enzyme IIA component of PTS; putative PTS IIA-like nitrogen-regulatory protein PtsN 4092873 12707436 EcDH1_3798 Escherichia coli DH1 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_006093689.1 4092409 R 536056 CDS YP_006093690.1 386597290 12707437 complement(4092883..4093188) 1 NC_017625.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: set:SEN4150 putative PTS system IIB protein; PTS system lactose/cellobiose-specific transporter subunit IIB 4093188 12707437 EcDH1_3799 Escherichia coli DH1 PTS system lactose/cellobiose-specific transporter subunit IIB YP_006093690.1 4092883 R 536056 CDS YP_006093691.1 386597291 12707438 complement(4093204..4094601) 1 NC_017625.1 PFAM: putative sugar-specific permease SgaT/UlaA; KEGG: sdy:SDY_4362 ascorbate-specific PTS system enzyme IIC; putative sugar-specific permease SgaT/UlaA 4094601 12707438 EcDH1_3800 Escherichia coli DH1 putative sugar-specific permease SgaT/UlaA YP_006093691.1 4093204 R 536056 CDS YP_006093692.1 386597292 12707439 4094956..4096020 1 NC_017625.1 KEGG: ssn:SSON_4374 putative L-ascorbate 6-phosphate lactonase; putative L-ascorbate 6-phosphate lactonase 4096020 12707439 EcDH1_3801 Escherichia coli DH1 putative L-ascorbate 6-phosphate lactonase YP_006093692.1 4094956 D 536056 CDS YP_006093693.1 386597293 12707440 4096128..4096883 1 NC_017625.1 PFAM: regulatory protein DeoR; KEGG: sbc:SbBS512_E4720 transcriptional regulator UlaR; DeoR family transcriptional regulator 4096883 12707440 EcDH1_3802 Escherichia coli DH1 DeoR family transcriptional regulator YP_006093693.1 4096128 D 536056 CDS YP_006093694.1 386597294 12707441 complement(4096880..4097629) 1 NC_017625.1 PFAM: phospholipase/Carboxylesterase; KEGG: sdy:SDY_4359 predicted hydrolase; phospholipase/Carboxylesterase 4097629 12707441 EcDH1_3803 Escherichia coli DH1 phospholipase/Carboxylesterase YP_006093694.1 4096880 R 536056 CDS YP_006093695.1 386597295 12707442 4097811..4098140 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: sdy:SDY_4358 hypothetical protein; hypothetical protein 4098140 12707442 EcDH1_3804 Escherichia coli DH1 hypothetical protein YP_006093695.1 4097811 D 536056 CDS YP_006093696.1 386597296 12707443 4098289..4098564 1 NC_017625.1 PFAM: protein of unknown function DUF1471; KEGG: sbo:SBO_4267 hypothetical protein; hypothetical protein 4098564 12707443 EcDH1_3805 Escherichia coli DH1 hypothetical protein YP_006093696.1 4098289 D 536056 CDS YP_006093697.1 386597297 12707444 complement(4098681..4100306) 1 NC_017625.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sfv:SFV_4343 isovaleryl CoA dehydrogenase; acyl-CoA dehydrogenase 4100306 12707444 EcDH1_3806 Escherichia coli DH1 acyl-CoA dehydrogenase YP_006093697.1 4098681 R 536056 CDS YP_006093698.1 386597298 12707445 complement(4100390..4101553) 1 NC_017625.1 PFAM: glutathionylspermidine synthase; KEGG: sdy:SDY_4403 putative synthetase/amidase; glutathionylspermidine synthase 4101553 12707445 EcDH1_3807 Escherichia coli DH1 glutathionylspermidine synthase YP_006093698.1 4100390 R 536056 CDS YP_006093699.1 386597299 12707446 complement(4101556..4102194) 1 NC_017625.1 PFAM: protein of unknown function DUF1190; KEGG: sfv:SFV_4341 hypothetical protein; hypothetical protein 4102194 12707446 EcDH1_3808 Escherichia coli DH1 hypothetical protein YP_006093699.1 4101556 R 536056 CDS YP_006093700.1 386597300 12707447 complement(4102204..4102602) 1 NC_017625.1 PFAM: protein of unknown function DUF350; KEGG: sbc:SbBS512_E4714 putative inner membrane protein; hypothetical protein 4102602 12707447 EcDH1_3809 Escherichia coli DH1 hypothetical protein YP_006093700.1 4102204 R 536056 CDS YP_006093701.1 386597301 12707448 complement(4102620..4103279) 1 NC_017625.1 KEGG: sbo:SBO_4272 hypothetical protein; hypothetical protein 4103279 12707448 EcDH1_3810 Escherichia coli DH1 hypothetical protein YP_006093701.1 4102620 R 536056 CDS YP_006093702.1 386597302 12707449 complement(4103330..4104028) 1 NC_017625.1 PFAM: PspA/IM30 family protein; KEGG: sbo:SBO_4273 putative alpha helical protein; phage shock protein A, PspA 4104028 12707449 EcDH1_3811 Escherichia coli DH1 phage shock protein A, PspA YP_006093702.1 4103330 R 536056 CDS YP_006093703.1 386597303 12707450 complement(4104047..4104448) 1 NC_017625.1 KEGG: cak:Caul_1403 hypothetical protein; hypothetical protein 4104448 12707450 EcDH1_3812 Escherichia coli DH1 hypothetical protein YP_006093703.1 4104047 R 536056 CDS YP_006093704.1 386597304 12707451 complement(4104575..4105306) 1 NC_017625.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ssn:SSON_4365 23S rRNA (guanosine-2'-O-)-methyltransferase; TrmH family RNA methyltransferase 4105306 12707451 EcDH1_3813 Escherichia coli DH1 TrmH family RNA methyltransferase YP_006093704.1 4104575 R 536056 CDS YP_006093705.1 386597305 12707452 complement(4105486..4107927) 1 NC_017625.1 KEGG: sfv:SFV_4337 exoribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; VacB and RNase II family 3'-5' exoribonuclease 4107927 12707452 EcDH1_3814 Escherichia coli DH1 VacB and RNase II family 3'-5' exoribonuclease YP_006093705.1 4105486 R 536056 CDS YP_006093706.1 386597306 12707453 complement(4107966..4108391) 1 NC_017625.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sdy:SDY_4411 transcriptional repressor NsrR; AsnC family transcriptional regulator 4108391 12707453 EcDH1_3815 Escherichia coli DH1 AsnC family transcriptional regulator YP_006093706.1 4107966 R 536056 CDS YP_006093707.1 386597307 12707454 complement(4108596..4109894) 1 NC_017625.1 PFAM: adenylosuccinate synthetase; KEGG: sdy:SDY_4412 adenylosuccinate synthetase; Adenylosuccinate synthase 4109894 12707454 EcDH1_3816 Escherichia coli DH1 Adenylosuccinate synthase YP_006093707.1 4108596 R 536056 CDS YP_006093708.1 386597308 12707455 complement(4109998..4110195) 1 NC_017625.1 KEGG: sdy:SDY_4413 hypothetical protein; hypothetical protein 4110195 12707455 EcDH1_3817 Escherichia coli DH1 hypothetical protein YP_006093708.1 4109998 R 536056 CDS YP_006093709.1 386597309 12707456 complement(4110277..4111281) 1 NC_017625.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: sbc:SbBS512_E4706 HflC protein; HflC protein 4111281 12707456 EcDH1_3818 Escherichia coli DH1 HflC protein YP_006093709.1 4110277 R 536056 CDS YP_006093710.1 386597310 12707457 complement(4111284..4112543) 1 NC_017625.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: sbc:SbBS512_E4705 HflK protein; HflK protein 4112543 12707457 EcDH1_3819 Escherichia coli DH1 HflK protein YP_006093710.1 4111284 R 536056 CDS YP_006093711.1 386597311 12707458 complement(4112629..4113909) 1 NC_017625.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: ssn:SSON_4358 putative GTPase HflX; GTP-binding proten HflX 4113909 12707458 EcDH1_3820 Escherichia coli DH1 GTP-binding proten HflX YP_006093711.1 4112629 R 536056 CDS YP_006093712.1 386597312 12707459 complement(4113985..4114293) 1 NC_017625.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: sbo:SBO_4284 RNA-binding protein Hfq; RNA chaperone Hfq 4114293 12707459 EcDH1_3821 Escherichia coli DH1 RNA chaperone Hfq YP_006093712.1 4113985 R 536056 CDS YP_006093713.1 386597313 12707460 complement(4114379..4115329) 1 NC_017625.1 KEGG: sbo:SBO_4285 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 4115329 12707460 EcDH1_3822 Escherichia coli DH1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_006093713.1 4114379 R 536056 CDS YP_006093714.1 386597314 12707461 complement(4115322..4117169) 1 NC_017625.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: sbc:SbBS512_E4701 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 4117169 12707461 EcDH1_3823 Escherichia coli DH1 DNA mismatch repair protein MutL YP_006093714.1 4115322 R 536056 CDS YP_006093715.1 386597315 12707462 complement(4117179..4118516) 1 NC_017625.1 PFAM: cell wall hydrolase/autolysin; KEGG: ssn:SSON_4354 N-acetylmuramoyl-L-alanine amidase II; N-acetylmuramoyl-L-alanine amidase 4118516 12707462 EcDH1_3824 Escherichia coli DH1 N-acetylmuramoyl-L-alanine amidase YP_006093715.1 4117179 R 536056 CDS YP_006093716.1 386597316 12707463 complement(4118535..4118996) 1 NC_017625.1 PFAM: protein of unknown function UPF0079; KEGG: sdy:SDY_4421 putative ATPase; hypothetical protein 4118996 12707463 EcDH1_3825 Escherichia coli DH1 hypothetical protein YP_006093716.1 4118535 R 536056 CDS YP_006093717.1 386597317 12707464 complement(4118968..4120515) 1 NC_017625.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: sbo:SBO_4290 hypothetical protein; carbohydrate kinase 4120515 12707464 EcDH1_3826 Escherichia coli DH1 carbohydrate kinase YP_006093717.1 4118968 R 536056 CDS YP_006093718.1 386597318 12707465 4120514..4121653 1 NC_017625.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: sbc:SbBS512_E4697 iron-sulfur cluster binding protein; iron-sulfur cluster binding protein 4121653 12707465 EcDH1_3827 Escherichia coli DH1 iron-sulfur cluster binding protein YP_006093718.1 4120514 D 536056 CDS YP_006093719.1 386597319 12707469 complement(4122432..4122977) 1 NC_017625.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: sdy:SDY_4430 oligoribonuclease; Exonuclease RNase T and DNA polymerase III 4122977 12707469 EcDH1_3828 Escherichia coli DH1 Exonuclease RNase T and DNA polymerase III YP_006093719.1 4122432 R 536056 CDS YP_006093720.1 386597320 12707470 4123072..4124124 1 NC_017625.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: sbc:SbBS512_E4693 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A 4124124 12707470 EcDH1_3829 Escherichia coli DH1 ribosome small subunit-dependent GTPase A YP_006093720.1 4123072 D 536056 CDS YP_006093721.1 386597321 12707471 4124221..4125189 1 NC_017625.1 KEGG: sbc:SbBS512_E4692 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase 4125189 12707471 EcDH1_3830 Escherichia coli DH1 phosphatidylserine decarboxylase YP_006093721.1 4124221 D 536056 CDS YP_006093722.1 386597322 12707472 4125211..4128534 1 NC_017625.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sbo:SBO_4298 predicted mechanosensitive channel; mechanosensitive ion channel protein MscS 4128534 12707472 EcDH1_3831 Escherichia coli DH1 mechanosensitive ion channel protein MscS YP_006093722.1 4125211 D 536056 CDS YP_006093723.1 386597323 12707473 complement(4128563..4128865) 1 NC_017625.1 KEGG: set:SEN4116 exported protein; hypothetical protein 4128865 12707473 EcDH1_3832 Escherichia coli DH1 hypothetical protein YP_006093723.1 4128563 R 536056 CDS YP_006093724.1 386597324 12707474 complement(4128874..4129188) 1 NC_017625.1 KEGG: sek:SSPA3867 hypothetical protein; hypothetical protein 4129188 12707474 EcDH1_3833 Escherichia coli DH1 hypothetical protein YP_006093724.1 4128874 R 536056 CDS YP_006093725.1 386597325 12707475 complement(4129240..4130784) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_4434 putative transport; amino acid permease 4130784 12707475 EcDH1_3834 Escherichia coli DH1 amino acid permease YP_006093725.1 4129240 R 536056 CDS YP_006093726.1 386597326 12707476 complement(4130961..4131938) 1 NC_017625.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N); KEGG: sdy:SDY_4399 lysyl-tRNA synthetase; lysyl-tRNA synthetase-like protein GenX 4131938 12707476 EcDH1_3835 Escherichia coli DH1 lysyl-tRNA synthetase-like protein GenX YP_006093726.1 4130961 R 536056 CDS YP_006093727.1 386597327 12707477 4132263..4134071 1 NC_017625.1 KEGG: sdy:SDY_4398 fumarate reductase flavoprotein subunit; TIGRFAM: fumarate reductase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase flavoprotein subunit 4134071 12707477 EcDH1_3836 Escherichia coli DH1 fumarate reductase flavoprotein subunit YP_006093727.1 4132263 D 536056 CDS YP_006093728.1 386597328 12707478 4134064..4134798 1 NC_017625.1 KEGG: sbc:SbBS512_E4685 fumarate reductase, iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 4134798 12707478 EcDH1_3837 Escherichia coli DH1 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_006093728.1 4134064 D 536056 CDS YP_006093729.1 386597329 12707479 4134809..4135204 1 NC_017625.1 PFAM: fumarate reductase subunit C; KEGG: sbc:SbBS512_E4684 fumarate reductase, cytochrome b subunit; fumarate reductase subunit C 4135204 12707479 EcDH1_3838 Escherichia coli DH1 fumarate reductase subunit C YP_006093729.1 4134809 D 536056 CDS YP_006093730.1 386597330 12707480 4135215..4135574 1 NC_017625.1 PFAM: fumarate reductase D subunit; KEGG: sdy:SDY_4395 fumarate reductase subunit D; fumarate reductase D subunit 4135574 12707480 EcDH1_3839 Escherichia coli DH1 fumarate reductase D subunit YP_006093730.1 4135215 D 536056 CDS YP_006093731.1 386597331 12707481 4135637..4136770 1 NC_017625.1 PFAM: beta-lactamase; KEGG: sbo:SBO_4306 beta-lactamase; Beta-lactamase 4136770 12707481 EcDH1_3840 Escherichia coli DH1 Beta-lactamase YP_006093731.1 4135637 D 536056 CDS YP_006093732.1 386597332 12707482 4136859..4137392 1 NC_017625.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: sfv:SFV_4308 outer membrane lipoprotein Blc; lipocalin family protein 4137392 12707482 EcDH1_3841 Escherichia coli DH1 lipocalin family protein YP_006093732.1 4136859 D 536056 CDS YP_006093733.1 386597333 12707483 complement(4137389..4137856) 1 NC_017625.1 PFAM: small multidrug resistance protein; KEGG: sbo:SBO_4308 SugE; small multidrug resistance protein 4137856 12707483 EcDH1_3842 Escherichia coli DH1 small multidrug resistance protein YP_006093733.1 4137389 R 536056 CDS YP_006093734.1 386597334 12707484 complement(4137882..4138028) 1 NC_017625.1 PFAM: Entericidin EcnAB; KEGG: sbc:SbBS512_E4679 entericidin B; entericidin EcnAB 4138028 12707484 EcDH1_3843 Escherichia coli DH1 entericidin EcnAB YP_006093734.1 4137882 R 536056 CDS YP_006093735.1 386597335 12707485 4138172..4138270 1 NC_017625.1 hypothetical protein 4138270 12707485 EcDH1_3844 Escherichia coli DH1 hypothetical protein YP_006093735.1 4138172 D 536056 CDS YP_006093736.1 386597336 12707486 complement(4138316..4138882) 1 NC_017625.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: sdy:SDY_4390 elongation factor P; translation elongation factor P 4138882 12707486 EcDH1_3845 Escherichia coli DH1 translation elongation factor P YP_006093736.1 4138316 R 536056 CDS YP_006093737.1 386597337 12707487 4138924..4139952 1 NC_017625.1 KEGG: sfx:S4569 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 4139952 12707487 EcDH1_3846 Escherichia coli DH1 lysine 2,3-aminomutase YodO family protein YP_006093737.1 4138924 D 536056 CDS YP_006093738.1 386597338 12707488 4140347..4141216 1 NC_017625.1 KEGG: sfv:SFV_4301 hypothetical protein; hypothetical protein 4141216 12707488 EcDH1_3847 Escherichia coli DH1 hypothetical protein YP_006093738.1 4140347 D 536056 CDS YP_006093739.1 386597339 12707489 complement(4141419..4141772) 1 NC_017625.1 KEGG: sdy:SDY_4450 hypothetical protein; hypothetical protein 4141772 12707489 EcDH1_3848 Escherichia coli DH1 hypothetical protein YP_006093739.1 4141419 R 536056 CDS YP_006093740.1 386597340 12707490 complement(4141910..4143556) 1 NC_017625.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: sdy:SDY_4449 chaperonin GroEL; chaperonin GroEL 4143556 12707490 EcDH1_3849 Escherichia coli DH1 chaperonin GroEL YP_006093740.1 4141910 R 536056 CDS YP_006093741.1 386597341 12707491 complement(4143600..4143893) 1 NC_017625.1 PFAM: chaperonin Cpn10; KEGG: sdy:SDY_4448 co-chaperonin GroES; chaperonin Cpn10 4143893 12707491 EcDH1_3850 Escherichia coli DH1 chaperonin Cpn10 YP_006093741.1 4143600 R 536056 CDS YP_006093742.1 386597342 12707492 4144169..4145425 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sbc:SbBS512_E4670 amino acid-polyamine-organocation (APC) permease family protein; amino acid permease 4145425 12707492 EcDH1_3851 Escherichia coli DH1 amino acid permease YP_006093742.1 4144169 D 536056 CDS YP_006093743.1 386597343 12707493 complement(4145441..4145917) 1 NC_017625.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: sbc:SbBS512_E4669 suppressor of F exclusion of phage T7; FxsA cytoplasmic membrane protein 4145917 12707493 EcDH1_3852 Escherichia coli DH1 FxsA cytoplasmic membrane protein YP_006093743.1 4145441 R 536056 CDS YP_006093744.1 386597344 12707494 4146254..4147690 1 NC_017625.1 TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: sdy:SDY_4444 aspartate ammonia-lyase; aspartate ammonia-lyase 4147690 12707494 EcDH1_3853 Escherichia coli DH1 aspartate ammonia-lyase YP_006093744.1 4146254 D 536056 CDS YP_006093745.1 386597345 12707495 4147808..4149109 1 NC_017625.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; C4-dicarboxylate anaerobic carrier; KEGG: sbc:SbBS512_E4667 anaerobic C4-dicarboxylate transporter DcuA; anaerobic c4-dicarboxylate antiporter 4149109 12707495 EcDH1_3854 Escherichia coli DH1 anaerobic c4-dicarboxylate antiporter YP_006093745.1 4147808 D 536056 CDS YP_006093746.1 386597346 12707496 4149225..4149563 1 NC_017625.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: sdy:SDY_4442 divalent-cation tolerance protein CutA; CutA1 divalent ion tolerance protein 4149563 12707496 EcDH1_3855 Escherichia coli DH1 CutA1 divalent ion tolerance protein YP_006093746.1 4149225 D 536056 CDS YP_006093747.1 386597347 12707497 4149539..4151236 1 NC_017625.1 PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: sdy:SDY_4441 thiol:disulfide interchange protein precursor; Protein-disulfide reductase 4151236 12707497 EcDH1_3856 Escherichia coli DH1 Protein-disulfide reductase YP_006093747.1 4149539 D 536056 CDS YP_006093748.1 386597348 12707498 4151273..4151848 1 NC_017625.1 PFAM: regulatory protein TetR; KEGG: ssn:SSON_4318 putative transcriptional regulator; TetR family transcriptional regulator 4151848 12707498 EcDH1_3857 Escherichia coli DH1 TetR family transcriptional regulator YP_006093748.1 4151273 D 536056 CDS YP_006093749.1 386597349 12707500 4152647..4154185 1 NC_017625.1 PFAM: transcriptional regulator domain protein; KEGG: kpn:KPN_00498 transcriptional activator of cad operon; transcriptional regulator CadC 4154185 12707500 EcDH1_3858 Escherichia coli DH1 transcriptional regulator CadC YP_006093749.1 4152647 D 536056 CDS YP_006093750.1 386597350 12707502 4155964..4158111 1 NC_017625.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: kpn:KPN_00500 lysine decarboxylase 1; lysine decarboxylase 4158111 12707502 EcDH1_3860 Escherichia coli DH1 lysine decarboxylase YP_006093750.1 4155964 D 536056 CDS YP_006093751.1 386597351 12707503 4158170..4159627 1 NC_017625.1 KEGG: ssn:SSON_4307 putative peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter 4159627 12707503 EcDH1_3861 Escherichia coli DH1 amino acid/peptide transporter YP_006093751.1 4158170 D 536056 CDS YP_006093752.1 386597352 12707504 4159864..4161381 1 NC_017625.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: ssn:SSON_4306 lysyl-tRNA synthetase; lysyl-tRNA synthetase 4161381 12707504 EcDH1_3862 Escherichia coli DH1 lysyl-tRNA synthetase YP_006093752.1 4159864 D 536056 CDS YP_006093753.1 386597353 12707505 complement(4161500..4161673) 1 NC_017625.1 KEGG: sew:SeSA_A1714 putative inner membrane protein; putative inner membrane protein 4161673 12707505 EcDH1_3863 Escherichia coli DH1 putative inner membrane protein YP_006093753.1 4161500 R 536056 CDS YP_006093754.1 386597354 12707506 complement(4161701..4161997) 1 NC_017625.1 KEGG: ssn:SSON_4305 hypothetical protein; hypothetical protein 4161997 12707506 EcDH1_3864 Escherichia coli DH1 hypothetical protein YP_006093754.1 4161701 R 536056 CDS YP_006093755.1 386597355 12707507 complement(4162224..4162496) 1 NC_017625.1 KEGG: sdy:SDY_4240 hypothetical protein; hypothetical protein 4162496 12707507 EcDH1_3865 Escherichia coli DH1 hypothetical protein YP_006093755.1 4162224 R 536056 CDS YP_006093756.1 386597356 12707508 complement(4162508..4162738) 1 NC_017625.1 PFAM: protein of unknown function DUF1271; KEGG: ssn:SSON_4303 hypothetical protein; hypothetical protein 4162738 12707508 EcDH1_3866 Escherichia coli DH1 hypothetical protein YP_006093756.1 4162508 R 536056 CDS YP_006093757.1 386597357 12707509 4162919..4164550 1 NC_017625.1 KEGG: sdy:SDY_4238 sensory histidine kinase DcuS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase regulating citrate/malate metabolism 4164550 12707509 EcDH1_3867 Escherichia coli DH1 signal transduction histidine kinase regulating citrate/malate metabolism YP_006093757.1 4162919 D 536056 CDS YP_006093758.1 386597358 12707510 4164547..4165266 1 NC_017625.1 PFAM: response regulator receiver; KEGG: sdy:SDY_4237 DNA-binding response regulator in two-component regulatory system with DcuS; fused response regulator receiver/hypothetical protein 4165266 12707510 EcDH1_3868 Escherichia coli DH1 fused response regulator receiver/hypothetical protein YP_006093758.1 4164547 D 536056 CDS YP_006093759.1 386597359 12707511 4165837..4167177 1 NC_017625.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: sbo:SBO_4327 anaerobic C4-dicarboxylate transporter; anaerobic c4-dicarboxylate antiporter 4167177 12707511 EcDH1_3869 Escherichia coli DH1 anaerobic c4-dicarboxylate antiporter YP_006093759.1 4165837 D 536056 CDS YP_006093760.1 386597360 12707512 4167255..4168901 1 NC_017625.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: sdy:SDY_4231 fumarase B; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 4168901 12707512 EcDH1_3870 Escherichia coli DH1 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta YP_006093760.1 4167255 D 536056 CDS YP_006093761.1 386597361 12707513 4169023..4169652 1 NC_017625.1 KEGG: sbo:SBO_4325 hypothetical protein; hypothetical protein 4169652 12707513 EcDH1_3871 Escherichia coli DH1 hypothetical protein YP_006093761.1 4169023 D 536056 CDS YP_006093762.1 386597362 12707514 complement(4169791..4171200) 1 NC_017625.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sfv:SFV_4110 melibiose:sodium symporter; sugar (Glycoside-Pentoside-Hexuronide) transporter 4171200 12707514 EcDH1_3872 Escherichia coli DH1 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_006093762.1 4169791 R 536056 CDS YP_006093763.1 386597363 12707515 complement(4171315..4172670) 1 NC_017625.1 PFAM: glycoside hydrolase family 4; KEGG: sdy:SDY_4092 alpha-galactosidase; glycoside hydrolase family protein 4172670 12707515 EcDH1_3873 Escherichia coli DH1 glycoside hydrolase family protein YP_006093763.1 4171315 R 536056 CDS YP_006093764.1 386597364 12707516 4172953..4173861 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E4615 melibiose operon regulatory protein; AraC family transcriptional regulator 4173861 12707516 EcDH1_3874 Escherichia coli DH1 AraC family transcriptional regulator YP_006093764.1 4172953 D 536056 CDS YP_006093765.1 386597365 12707517 4174057..4176327 1 NC_017625.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sdy:SDY_4094 biodegradative arginine decarboxylase; Arginine decarboxylase 4176327 12707517 EcDH1_3875 Escherichia coli DH1 Arginine decarboxylase YP_006093765.1 4174057 D 536056 CDS YP_006093766.1 386597366 12707518 4176652..4177413 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sdy:SDY_4097 putative AraC-type regulatory protein; AraC family transcriptional regulator 4177413 12707518 EcDH1_3876 Escherichia coli DH1 AraC family transcriptional regulator YP_006093766.1 4176652 D 536056 CDS YP_006093767.1 386597367 12707519 4177550..4178887 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: ssn:SSON_4290 arginine:agmatin antiporter; amino acid permease 4178887 12707519 EcDH1_3877 Escherichia coli DH1 amino acid permease YP_006093767.1 4177550 D 536056 CDS YP_006093768.1 386597368 12707520 4178961..4180634 1 NC_017625.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: sfx:S3621 putative cell division protein; sulfatase 4180634 12707520 EcDH1_3878 Escherichia coli DH1 sulfatase YP_006093768.1 4178961 D 536056 CDS YP_006093769.1 386597369 12707521 4180631..4181299 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbo:SBO_4140 DNA-binding response regulator in two-component regulatory system with BasS; winged helix family two component transcriptional regulator 4181299 12707521 EcDH1_3879 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006093769.1 4180631 D 536056 CDS YP_006093770.1 386597370 12707522 4181300..4182400 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sbo:SBO_4139 sensor protein BasS/PmrB; histidine kinase 4182400 12707522 EcDH1_3880 Escherichia coli DH1 histidine kinase YP_006093770.1 4181300 D 536056 CDS YP_006093771.1 386597371 12707523 complement(4182577..4184079) 1 NC_017625.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; Osmosensory transporter coiled coil; KEGG: sdy:SDY_4102 proline/glycine betaine transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) 4184079 12707523 EcDH1_3881 Escherichia coli DH1 metabolite/H+ symporter, major facilitator superfamily (MFS) YP_006093771.1 4182577 R 536056 CDS YP_006093772.1 386597372 12707524 complement(4184343..4185221) 1 NC_017625.1 KEGG: sfv:SFV_4120 hypothetical protein; hypothetical protein 4185221 12707524 EcDH1_3882 Escherichia coli DH1 hypothetical protein YP_006093772.1 4184343 R 536056 CDS YP_006093773.1 386597373 12707525 complement(4185218..4187446) 1 NC_017625.1 KEGG: sfv:SFV_4121 hypothetical protein; hypothetical protein 4187446 12707525 EcDH1_3883 Escherichia coli DH1 hypothetical protein YP_006093773.1 4185218 R 536056 CDS YP_006093774.1 386597374 12707526 4187847..4188182 1 NC_017625.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: sdy:SDY_4109 hypothetical protein; alkylphosphonate utilization operon protein PhnA 4188182 12707526 EcDH1_3884 Escherichia coli DH1 alkylphosphonate utilization operon protein PhnA YP_006093774.1 4187847 D 536056 CDS YP_006093775.1 386597375 12707527 4188840..4189283 1 NC_017625.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: sbc:SbBS512_E4608 putative PhnB protein; Glyoxalase/bleomycin resistance protein/dioxygenase 4189283 12707527 EcDH1_3885 Escherichia coli DH1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_006093775.1 4188840 D 536056 CDS YP_006093776.1 386597376 12707528 4189416..4190204 1 NC_017625.1 KEGG: sbo:SBO_4131 phosphonate/organophosphate ester transporter subunit; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATP-binding protein 4190204 12707528 EcDH1_3886 Escherichia coli DH1 phosphonate ABC transporter ATP-binding protein YP_006093776.1 4189416 D 536056 CDS YP_006093777.1 386597377 12707529 4190229..4191245 1 NC_017625.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter, periplasmic phosphonate binding protein; KEGG: sbo:SBO_4130 periplasmic binding protein component of Pn transporter; phosphonate ABC transporter substrate-binding protein 4191245 12707529 EcDH1_3887 Escherichia coli DH1 phosphonate ABC transporter substrate-binding protein YP_006093777.1 4190229 D 536056 CDS YP_006093778.1 386597378 12707531 4192159..4192884 1 NC_017625.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sbo:SBO_4128 putative transcriptional regulator; phophonate C-P lyase system transcriptional regulator PhnF, GntR family 4192884 12707531 EcDH1_3889 Escherichia coli DH1 phophonate C-P lyase system transcriptional regulator PhnF, GntR family YP_006093778.1 4192159 D 536056 CDS YP_006093779.1 386597379 12707532 4192885..4193337 1 NC_017625.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: ssn:SSON_4277 phosphonate metabolism; phosphonate C-P lyase system protein PhnG 4193337 12707532 EcDH1_3890 Escherichia coli DH1 phosphonate C-P lyase system protein PhnG YP_006093779.1 4192885 D 536056 CDS YP_006093780.1 386597380 12707533 4193334..4193918 1 NC_017625.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: sdy:SDY_4116 carbon-phosphorus lyase complex subunit; phosphonate C-P lyase system protein PhnH 4193918 12707533 EcDH1_3891 Escherichia coli DH1 phosphonate C-P lyase system protein PhnH YP_006093780.1 4193334 D 536056 CDS YP_006093781.1 386597381 12707534 4193918..4194982 1 NC_017625.1 PFAM: phosphonate metabolism; KEGG: ssn:SSON_4275 phosphonate metabolism; phosphonate metabolism protein 4194982 12707534 EcDH1_3892 Escherichia coli DH1 phosphonate metabolism protein YP_006093781.1 4193918 D 536056 CDS YP_006093782.1 386597382 12707535 4194975..4195820 1 NC_017625.1 PFAM: phosphonate metabolism PhnJ; KEGG: sbo:SBO_4124 PhnJ; phosphonate metabolism PhnJ 4195820 12707535 EcDH1_3893 Escherichia coli DH1 phosphonate metabolism PhnJ YP_006093782.1 4194975 D 536056 CDS YP_006093783.1 386597383 12707536 4195817..4196575 1 NC_017625.1 KEGG: ssn:SSON_4273 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK 4196575 12707536 EcDH1_3894 Escherichia coli DH1 phosphonate C-P lyase system protein PhnK YP_006093783.1 4195817 D 536056 CDS YP_006093784.1 386597384 12707537 4196686..4197366 1 NC_017625.1 KEGG: sdy:SDY_4120 ATP-binding component of phosphonate transport; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL 4197366 12707537 EcDH1_3895 Escherichia coli DH1 phosphonate C-P lyase system protein PhnL YP_006093784.1 4196686 D 536056 CDS YP_006093785.1 386597385 12707538 4197363..4198499 1 NC_017625.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ssn:SSON_4271 phosphonate metabolism; phosphonate metabolism protein PhnM 4198499 12707538 EcDH1_3896 Escherichia coli DH1 phosphonate metabolism protein PhnM YP_006093785.1 4197363 D 536056 CDS YP_006093786.1 386597386 12707539 4198499..4199056 1 NC_017625.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: ssn:SSON_4270 ribose 1,5-bisphosphokinase; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 4199056 12707539 EcDH1_3897 Escherichia coli DH1 phosphonate metabolism protein/1,5-bisphosphokinase PhnN YP_006093786.1 4198499 D 536056 CDS YP_006093787.1 386597387 12707540 4199043..4199477 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_4269 aminoalkylphosphonic acid N-acetyltransferase; N-acetyltransferase GCN5 4199477 12707540 EcDH1_3898 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006093787.1 4199043 D 536056 CDS YP_006093788.1 386597388 12707541 4199479..4200237 1 NC_017625.1 TIGRFAM: phosphonate metabolism protein PhnP; KEGG: ssn:SSON_4268 carbon-phosphorus lyase complex accessory protein; phosphonate metabolism protein PhnP 4200237 12707541 EcDH1_3899 Escherichia coli DH1 phosphonate metabolism protein PhnP YP_006093788.1 4199479 D 536056 CDS YP_006093789.1 386597389 12707542 complement(4200384..4200713) 1 NC_017625.1 KEGG: sbo:SBO_4117 hypothetical protein; hypothetical protein 4200713 12707542 EcDH1_3900 Escherichia coli DH1 hypothetical protein YP_006093789.1 4200384 R 536056 CDS YP_006093790.1 386597390 12707543 complement(4200782..4201231) 1 NC_017625.1 KEGG: cko:CKO_03782 ribose-5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; ribose 5-phosphate isomerase B 4201231 12707543 EcDH1_3901 Escherichia coli DH1 ribose 5-phosphate isomerase B YP_006093790.1 4200782 R 536056 CDS YP_006093791.1 386597391 12707544 4201590..4202480 1 NC_017625.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cko:CKO_03784 DNA-binding transcriptional repressor RpiR; RpiR family transcriptional regulator 4202480 12707544 EcDH1_3902 Escherichia coli DH1 RpiR family transcriptional regulator YP_006093791.1 4201590 D 536056 CDS YP_006093792.1 386597392 12707545 4202539..4203474 1 NC_017625.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cko:CKO_03785 D-allose transporter subunit; monosaccharide-transporting ATPase 4203474 12707545 EcDH1_3903 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006093792.1 4202539 D 536056 CDS YP_006093793.1 386597393 12707546 4203601..4205133 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cko:CKO_03786 D-allose transporter ATP-binding protein; ABC transporter 4205133 12707546 EcDH1_3904 Escherichia coli DH1 ABC transporter YP_006093793.1 4203601 D 536056 CDS YP_006093794.1 386597394 12707547 4205112..4206092 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: cko:CKO_03787 D-allose transporter subunit; monosaccharide-transporting ATPase 4206092 12707547 EcDH1_3905 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006093794.1 4205112 D 536056 CDS YP_006093795.1 386597395 12707548 4206103..4206798 1 NC_017625.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: cko:CKO_03788 allulose-6-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase 4206798 12707548 EcDH1_3906 Escherichia coli DH1 Ribulose-phosphate 3-epimerase YP_006093795.1 4206103 D 536056 CDS YP_006093796.1 386597396 12707549 4206782..4207711 1 NC_017625.1 PFAM: ROK family protein; KEGG: cko:CKO_03789 D-allose kinase; ROK family protein 4207711 12707549 EcDH1_3907 Escherichia coli DH1 ROK family protein YP_006093796.1 4206782 D 536056 CDS YP_006093797.1 386597397 12707550 4207984..4209969 1 NC_017625.1 PFAM: beta-lactamase domain protein; KEGG: ssn:SSON_4265 hypothetical protein; beta-lactamase 4209969 12707550 EcDH1_3908 Escherichia coli DH1 beta-lactamase YP_006093797.1 4207984 D 536056 CDS YP_006093798.1 386597398 12707551 4210178..4210453 1 NC_017625.1 KEGG: sbo:SBO_4114 formate dehydrogenase H; formate dehydrogenase H 4210453 12707551 EcDH1_3909 Escherichia coli DH1 formate dehydrogenase H YP_006093798.1 4210178 D 536056 CDS YP_006093799.1 386597399 12707552 4210472..4211503 1 NC_017625.1 TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: ssn:SSON_4263 predicted membrane fusion protein of efflux pump; efflux pump membrane protein 4211503 12707552 EcDH1_3910 Escherichia coli DH1 efflux pump membrane protein YP_006093799.1 4210472 D 536056 CDS YP_006093800.1 386597400 12707553 4211503..4213554 1 NC_017625.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: sbo:SBO_4112 multidrug efflux system protein MdtO; fusaric acid resistance protein 4213554 12707553 EcDH1_3911 Escherichia coli DH1 fusaric acid resistance protein YP_006093800.1 4211503 D 536056 CDS YP_006093801.1 386597401 12707554 4213551..4215017 1 NC_017625.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ssn:SSON_4261 predicted outer membrane factor of efflux pump; NodT family RND efflux system outer membrane lipoprotein 4215017 12707554 EcDH1_3912 Escherichia coli DH1 NodT family RND efflux system outer membrane lipoprotein YP_006093801.1 4213551 D 536056 CDS YP_006093802.1 386597402 12707555 4215215..4217362 1 NC_017625.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: set:SEN4056 formate dehydrogenase H; formate dehydrogenase subunit alpha 4217362 12707555 EcDH1_3913 Escherichia coli DH1 formate dehydrogenase subunit alpha YP_006093802.1 4215215 D 536056 CDS YP_006093803.1 386597403 12707556 4217456..4218145 1 NC_017625.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: ssn:SSON_4259 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 4218145 12707556 EcDH1_3914 Escherichia coli DH1 Sel1 domain-containing protein repeat-containing protein YP_006093803.1 4217456 D 536056 CDS YP_006093804.1 386597404 12707557 complement(4218676..4219989) 1 NC_017625.1 PFAM: sodium:dicarboxylate symporter; KEGG: sbc:SbBS512_E4598 proton glutamate symport protein; sodium:dicarboxylate symporter 4219989 12707557 EcDH1_3915 Escherichia coli DH1 sodium:dicarboxylate symporter YP_006093804.1 4218676 R 536056 CDS YP_006093805.1 386597405 12707558 complement(4220331..4220927) 1 NC_017625.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sfv:SFV_4135 formate-dependent nitrite reductase complex subunit NrfG; hypothetical protein 4220927 12707558 EcDH1_3916 Escherichia coli DH1 hypothetical protein YP_006093805.1 4220331 R 536056 CDS YP_006093806.1 386597406 12707559 complement(4220924..4221307) 1 NC_017625.1 TIGRFAM: cytochrome c nitrite reductase, accessory protein NrfF; PFAM: cytochrome C biogenesis protein; KEGG: sbc:SbBS512_E4596 formate-dependent nitrite reductase complex, NrfF subunit; cytochrome c nitrite reductase, accessory protein NrfF 4221307 12707559 EcDH1_3917 Escherichia coli DH1 cytochrome c nitrite reductase, accessory protein NrfF YP_006093806.1 4220924 R 536056 CDS YP_006093807.1 386597407 12707560 complement(4221300..4222958) 1 NC_017625.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: ssn:SSON_4255 heme lyase subunit NrfE; cytochrome c-type biogenesis protein CcmF 4222958 12707560 EcDH1_3918 Escherichia coli DH1 cytochrome c-type biogenesis protein CcmF YP_006093807.1 4221300 R 536056 CDS YP_006093808.1 386597408 12707561 complement(4223038..4223994) 1 NC_017625.1 TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; KEGG: ssn:SSON_4254 formate-dependent nitrate reductase complex transmembrane protein; cytochrome c nitrite reductase, NrfD subunit 4223994 12707561 EcDH1_3919 Escherichia coli DH1 cytochrome c nitrite reductase, NrfD subunit YP_006093808.1 4223038 R 536056 CDS YP_006093809.1 386597409 12707562 complement(4223991..4224662) 1 NC_017625.1 TIGRFAM: cytochrome c nitrite reductase, Fe-S protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_4103 formate-dependent nitrite reductase complex Fe-S centers; cytochrome c nitrite reductase, Fe-S protein 4224662 12707562 EcDH1_3920 Escherichia coli DH1 cytochrome c nitrite reductase, Fe-S protein YP_006093809.1 4223991 R 536056 CDS YP_006093810.1 386597410 12707563 complement(4224659..4225225) 1 NC_017625.1 TIGRFAM: cytochrome c nitrite reductase, pentaheme subunit; KEGG: ssn:SSON_4252 cytochrome c-type protein NrfB; cytochrome c nitrite reductase, pentaheme subunit 4225225 12707563 EcDH1_3921 Escherichia coli DH1 cytochrome c nitrite reductase, pentaheme subunit YP_006093810.1 4224659 R 536056 CDS YP_006093811.1 386597411 12707564 complement(4225270..4226706) 1 NC_017625.1 KEGG: sbc:SbBS512_E4591 formate-dependent cytochrome c nitrite reductase, c552 subunit; TIGRFAM: formate-dependent cytochrome c nitrite reductase, c552 subunit; PFAM: cytochrome c552; formate-dependent cytochrome c nitrite reductase, c552 subunit 4226706 12707564 EcDH1_3922 Escherichia coli DH1 formate-dependent cytochrome c nitrite reductase, c552 subunit YP_006093811.1 4225270 R 536056 CDS YP_006093812.1 386597412 12707565 4227099..4229057 1 NC_017625.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: ssn:SSON_4250 acetyl-CoA synthetase; acetate/CoA ligase 4229057 12707565 EcDH1_3923 Escherichia coli DH1 acetate/CoA ligase YP_006093812.1 4227099 D 536056 CDS YP_006093813.1 386597413 12707566 4229257..4229571 1 NC_017625.1 PFAM: protein of unknown function DUF485; KEGG: sbc:SbBS512_E4587 hypothetical protein; hypothetical protein 4229571 12707566 EcDH1_3924 Escherichia coli DH1 hypothetical protein YP_006093813.1 4229257 D 536056 CDS YP_006093814.1 386597414 12707567 4229568..4231217 1 NC_017625.1 TIGRFAM: SSS sodium solute transporter superfamily; cation/acetate symporter ActP; PFAM: Na+/solute symporter; KEGG: ssn:SSON_4249 acetate permease; cation/acetate symporter ActP 4231217 12707567 EcDH1_3925 Escherichia coli DH1 cation/acetate symporter ActP YP_006093814.1 4229568 D 536056 CDS YP_006093815.1 386597415 12707568 4231395..4232687 1 NC_017625.1 PFAM: pentapeptide repeat protein; KEGG: sfx:S3593 hypothetical protein; pentapeptide repeat-containing protein 4232687 12707568 EcDH1_3926 Escherichia coli DH1 pentapeptide repeat-containing protein YP_006093815.1 4231395 D 536056 CDS YP_006093816.1 386597416 12707569 complement(4232841..4234490) 1 NC_017625.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: sdy:SDY_4502 hypothetical protein; Na+/H+ antiporter 4234490 12707569 EcDH1_3927 Escherichia coli DH1 Na+/H+ antiporter YP_006093816.1 4232841 R 536056 CDS YP_006093817.1 386597417 12707570 complement(4234642..4235991) 1 NC_017625.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sdy:SDY_4503 hypothetical protein; xanthine/uracil/vitamin C permease 4235991 12707570 EcDH1_3928 Escherichia coli DH1 xanthine/uracil/vitamin C permease YP_006093817.1 4234642 R 536056 CDS YP_006093818.1 386597418 12707571 complement(4236537..4237001) 1 NC_017625.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sdy:SDY_4504 redox-sensing activator of SoxS; MerR family transcriptional regulator 4237001 12707571 EcDH1_3929 Escherichia coli DH1 MerR family transcriptional regulator YP_006093818.1 4236537 R 536056 CDS YP_006093819.1 386597419 12707572 4237087..4237410 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E4580 regulatory protein SoxS; AraC family transcriptional regulator 4237410 12707572 EcDH1_3930 Escherichia coli DH1 AraC family transcriptional regulator YP_006093819.1 4237087 D 536056 CDS YP_006093820.1 386597420 12707573 complement(4237413..4238999) 1 NC_017625.1 PFAM: EAL domain protein; KEGG: sfv:SFV_4151 hypothetical protein; EAL domain-containing protein 4238999 12707573 EcDH1_3931 Escherichia coli DH1 EAL domain-containing protein YP_006093820.1 4237413 R 536056 CDS YP_006093821.1 386597421 12707574 4239429..4239710 1 NC_017625.1 KEGG: sbc:SbBS512_E4574 hypothetical protein; hypothetical protein 4239710 12707574 EcDH1_3932 Escherichia coli DH1 hypothetical protein YP_006093821.1 4239429 D 536056 CDS YP_006093822.1 386597422 12707575 complement(4239809..4240345) 1 NC_017625.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sbo:SBO_4088 single-strand DNA-binding protein; single-strand binding protein 4240345 12707575 EcDH1_3933 Escherichia coli DH1 single-strand binding protein YP_006093822.1 4239809 R 536056 CDS YP_006093823.1 386597423 12707576 4240599..4243421 1 NC_017625.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sbc:SbBS512_E4572 excinuclease ABC, A subunit; excinuclease ABC subunit A 4243421 12707576 EcDH1_3934 Escherichia coli DH1 excinuclease ABC subunit A YP_006093823.1 4240599 D 536056 CDS YP_006093824.1 386597424 12707577 complement(4243456..4243812) 1 NC_017625.1 PFAM: protein of unknown function DUF419; KEGG: sdy:SDY_4510 hypothetical protein; hypothetical protein 4243812 12707577 EcDH1_3935 Escherichia coli DH1 hypothetical protein YP_006093824.1 4243456 R 536056 CDS YP_006093825.1 386597425 12707578 complement(4243816..4244232) 1 NC_017625.1 PFAM: protein of unknown function UPF0047; KEGG: sdy:SDY_4511 hypothetical protein; hypothetical protein 4244232 12707578 EcDH1_3936 Escherichia coli DH1 hypothetical protein YP_006093825.1 4243816 R 536056 CDS YP_006093826.1 386597426 12707579 complement(4244343..4245056) 1 NC_017625.1 KEGG: sbo:SBO_4084 acid phosphatase/phosphotransferase; TIGRFAM: HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; PFAM: acid phosphatase (Class B); HAD superfamily phosphatase 4245056 12707579 EcDH1_3937 Escherichia coli DH1 HAD superfamily phosphatase YP_006093826.1 4244343 R 536056 CDS YP_006093827.1 386597427 12707580 4245458..4245661 1 NC_017625.1 KEGG: sfl:SF4150 hypothetical protein; hypothetical protein 4245661 12707580 EcDH1_3938 Escherichia coli DH1 hypothetical protein YP_006093827.1 4245458 D 536056 CDS YP_006093828.1 386597428 12707581 complement(4246163..4247356) 1 NC_017625.1 PFAM: aminotransferase class I and II; KEGG: ssn:SSON_4234 aromatic amino acid aminotransferase; aromatic-amino-acid transaminase 4247356 12707581 EcDH1_3939 Escherichia coli DH1 aromatic-amino-acid transaminase YP_006093828.1 4246163 R 536056 CDS YP_006093829.1 386597429 12707582 complement(4247609..4248688) 1 NC_017625.1 KEGG: sfv:SFV_4160 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 4248688 12707582 EcDH1_3940 Escherichia coli DH1 alanine racemase YP_006093829.1 4247609 R 536056 CDS YP_006093830.1 386597430 12707583 complement(4248741..4250156) 1 NC_017625.1 KEGG: sbc:SbBS512_E4543 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase 4250156 12707583 EcDH1_3941 Escherichia coli DH1 replicative DNA helicase YP_006093830.1 4248741 R 536056 CDS YP_006093831.1 386597431 12707584 4250239..4251222 1 NC_017625.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sdy:SDY_4523 quinone oxidoreductase, NADPH-dependent; alcohol dehydrogenase 4251222 12707584 EcDH1_3942 Escherichia coli DH1 alcohol dehydrogenase YP_006093831.1 4250239 D 536056 CDS YP_006093832.1 386597432 12707585 complement(4251388..4251630) 1 NC_017625.1 TIGRFAM: phage shock protein G; PFAM: shock protein G; KEGG: sdy:SDY_4524 phage shock protein G; phage shock protein G 4251630 12707585 EcDH1_3943 Escherichia coli DH1 phage shock protein G YP_006093832.1 4251388 R 536056 CDS YP_006093833.1 386597433 12707586 complement(4251764..4252801) 1 NC_017625.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: ssn:SSON_4229 tRNA-dihydrouridine synthase A; yjbN family TIM-barrel protein 4252801 12707586 EcDH1_3944 Escherichia coli DH1 yjbN family TIM-barrel protein YP_006093833.1 4251764 R 536056 CDS YP_006093834.1 386597434 12707587 complement(4253164..4253871) 1 NC_017625.1 KEGG: ssn:SSON_4228 hypothetical protein; hypothetical protein 4253871 12707587 EcDH1_3945 Escherichia coli DH1 hypothetical protein YP_006093834.1 4253164 R 536056 CDS YP_006093835.1 386597435 12707588 complement(4253895..4254149) 1 NC_017625.1 KEGG: sbo:SBO_4070 hypothetical protein; hypothetical protein 4254149 12707588 EcDH1_3946 Escherichia coli DH1 hypothetical protein YP_006093835.1 4253895 R 536056 CDS YP_006093836.1 386597436 12707589 4254467..4254982 1 NC_017625.1 PFAM: ferric-uptake regulator; KEGG: ssn:SSON_4226 zinc uptake transcriptional repressor; ferric uptake regulator family protein 4254982 12707589 EcDH1_3947 Escherichia coli DH1 ferric uptake regulator family protein YP_006093836.1 4254467 D 536056 CDS YP_006093837.1 386597437 12707590 complement(4255024..4255233) 1 NC_017625.1 PFAM: CsbD family protein; KEGG: sdy:SDY_4529 putative stress-response protein; CsbD family protein 4255233 12707590 EcDH1_3948 Escherichia coli DH1 CsbD family protein YP_006093837.1 4255024 R 536056 CDS YP_006093838.1 386597438 12707591 complement(4255349..4256674) 1 NC_017625.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sbc:SbBS512_E4553 DNA-damage-inducible protein F; MATE efflux family protein 4256674 12707591 EcDH1_3949 Escherichia coli DH1 MATE efflux family protein YP_006093838.1 4255349 R 536056 CDS YP_006093839.1 386597439 12707592 complement(4256747..4257355) 1 NC_017625.1 KEGG: sdy:SDY_4531 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; SOS-response transcriptional repressor, LexA 4257355 12707592 EcDH1_3950 Escherichia coli DH1 SOS-response transcriptional repressor, LexA YP_006093839.1 4256747 R 536056 CDS YP_006093840.1 386597440 12707593 complement(4257465..4257833) 1 NC_017625.1 PFAM: diacylglycerol kinase; KEGG: sdy:SDY_4532 diacylglycerol kinase; diacylglycerol kinase 4257833 12707593 EcDH1_3951 Escherichia coli DH1 diacylglycerol kinase YP_006093840.1 4257465 R 536056 CDS YP_006093841.1 386597441 12707594 4258004..4260427 1 NC_017625.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: sdy:SDY_4533 glycerol-3-phosphate acyltransferase; glycerol-3-phosphate O-acyltransferase 4260427 12707594 EcDH1_3952 Escherichia coli DH1 glycerol-3-phosphate O-acyltransferase YP_006093841.1 4258004 D 536056 CDS YP_006093842.1 386597442 12707595 complement(4260582..4261454) 1 NC_017625.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: sdy:SDY_4534 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase 4261454 12707595 EcDH1_3953 Escherichia coli DH1 4-hydroxybenzoate polyprenyltransferase YP_006093842.1 4260582 R 536056 CDS YP_006093843.1 386597443 12707596 complement(4261467..4261964) 1 NC_017625.1 PFAM: Chorismate lyase; KEGG: sbc:SbBS512_E4558 chorismate lyase; chorismate lyase 4261964 12707596 EcDH1_3954 Escherichia coli DH1 chorismate lyase YP_006093843.1 4261467 R 536056 CDS YP_006093844.1 386597444 12707597 complement(4262187..4263515) 1 NC_017625.1 KEGG: sbo:SBO_4080 hypothetical protein; hypothetical protein 4263515 12707597 EcDH1_3955 Escherichia coli DH1 hypothetical protein YP_006093844.1 4262187 R 536056 CDS YP_006093845.1 386597445 12707598 complement(4263573..4263767) 1 NC_017625.1 hypothetical protein 4263767 12707598 EcDH1_3956 Escherichia coli DH1 hypothetical protein YP_006093845.1 4263573 R 536056 CDS YP_006093846.1 386597446 12707599 4263869..4264021 1 NC_017625.1 hypothetical protein 4264021 12707599 EcDH1_3957 Escherichia coli DH1 hypothetical protein YP_006093846.1 4263869 D 536056 CDS YP_006093847.1 386597447 12707600 complement(4263996..4264916) 1 NC_017625.1 PFAM: Maltose operon periplasmic; KEGG: ssn:SSON_4215 maltose regulon periplasmic protein; maltose operon periplasmic protein 4264916 12707600 EcDH1_3958 Escherichia coli DH1 maltose operon periplasmic protein YP_006093847.1 4263996 R 536056 CDS YP_006093848.1 386597448 12707601 complement(4265159..4266499) 1 NC_017625.1 PFAM: porin LamB type; KEGG: ssn:SSON_4214 maltoporin; LamB type porin 4266499 12707601 EcDH1_3959 Escherichia coli DH1 LamB type porin YP_006093848.1 4265159 R 536056 CDS YP_006093849.1 386597449 12707602 complement(4266571..4267686) 1 NC_017625.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ssn:SSON_4213 maltose/maltodextrin transporter ATP-binding protein; ABC transporter 4267686 12707602 EcDH1_3960 Escherichia coli DH1 ABC transporter YP_006093849.1 4266571 R 536056 CDS YP_006093850.1 386597450 12707603 4267863..4267958 1 NC_017625.1 hypothetical protein 4267958 12707603 EcDH1_3961 Escherichia coli DH1 hypothetical protein YP_006093850.1 4267863 D 536056 CDS YP_006093851.1 386597451 12707604 4268051..4269241 1 NC_017625.1 PFAM: extracellular solute-binding protein family 1; KEGG: sfv:SFV_4180 maltose ABC transporter periplasmic protein; extracellular solute-binding protein 4269241 12707604 EcDH1_3962 Escherichia coli DH1 extracellular solute-binding protein YP_006093851.1 4268051 D 536056 CDS YP_006093852.1 386597452 12707605 4269395..4270939 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_4181 maltose transporter membrane protein; Fructose-bisphosphate aldolase 4270939 12707605 EcDH1_3963 Escherichia coli DH1 Fructose-bisphosphate aldolase YP_006093852.1 4269395 D 536056 CDS YP_006093853.1 386597453 12707606 4270954..4271844 1 NC_017625.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S3558 maltose transporter permease; binding-protein-dependent transport system inner membrane protein 4271844 12707606 EcDH1_3964 Escherichia coli DH1 binding-protein-dependent transport system inner membrane protein YP_006093853.1 4270954 D 536056 CDS YP_006093854.1 386597454 12707607 4272216..4273691 1 NC_017625.1 KEGG: ssn:SSON_4209 D-xylose transporter XylE; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 4273691 12707607 EcDH1_3965 Escherichia coli DH1 sugar transporter YP_006093854.1 4272216 D 536056 CDS YP_006093855.1 386597455 12707608 complement(4273735..4274145) 1 NC_017625.1 PFAM: phosphate-starvation-inducible E; KEGG: sdy:SDY_4218 phosphate-starvation-inducible protein PsiE; phosphate-starvation-inducible E 4274145 12707608 EcDH1_3966 Escherichia coli DH1 phosphate-starvation-inducible E YP_006093855.1 4273735 R 536056 CDS YP_006093856.1 386597456 12707609 4274415..4274693 1 NC_017625.1 KEGG: sbo:SBO_4058 hypothetical protein; hypothetical protein 4274693 12707609 EcDH1_3967 Escherichia coli DH1 hypothetical protein YP_006093856.1 4274415 D 536056 CDS YP_006093857.1 386597457 12707610 complement(4274740..4276836) 1 NC_017625.1 PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: sfv:SFV_4185 hypothetical protein; hypothetical protein 4276836 12707610 EcDH1_3968 Escherichia coli DH1 hypothetical protein YP_006093857.1 4274740 R 536056 CDS YP_006093858.1 386597458 12707611 complement(4276836..4277573) 1 NC_017625.1 PFAM: protein of unknown function DUF1017; KEGG: sfx:S3554 hypothetical protein; hypothetical protein 4277573 12707611 EcDH1_3969 Escherichia coli DH1 hypothetical protein YP_006093858.1 4276836 R 536056 CDS YP_006093859.1 386597459 12707612 complement(4277570..4278208) 1 NC_017625.1 KEGG: ssn:SSON_4205 hypothetical protein; hypothetical protein 4278208 12707612 EcDH1_3970 Escherichia coli DH1 hypothetical protein YP_006093859.1 4277570 R 536056 CDS YP_006093860.1 386597460 12707613 complement(4278322..4278564) 1 NC_017625.1 KEGG: sdy:SDY_4222 hypothetical protein; hypothetical protein 4278564 12707613 EcDH1_3971 Escherichia coli DH1 hypothetical protein YP_006093860.1 4278322 R 536056 CDS YP_006093861.1 386597461 12707614 complement(4279063..4280712) 1 NC_017625.1 PFAM: phosphoglucose isomerase (PGI); KEGG: sdy:SDY_4226 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 4280712 12707614 EcDH1_3972 Escherichia coli DH1 glucose-6-phosphate isomerase YP_006093861.1 4279063 R 536056 CDS YP_006093862.1 386597462 12707615 4281237..4282586 1 NC_017625.1 KEGG: ssn:SSON_4202 aspartate kinase III; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 4282586 12707615 EcDH1_3973 Escherichia coli DH1 aspartate kinase YP_006093862.1 4281237 D 536056 CDS YP_006093863.1 386597463 12707616 4282839..4283111 1 NC_017625.1 KEGG: sdy:SDY_4309 hypothetical protein; hypothetical protein 4283111 12707616 EcDH1_3974 Escherichia coli DH1 hypothetical protein YP_006093863.1 4282839 D 536056 CDS YP_006093864.1 386597464 12707617 complement(4283244..4284116) 1 NC_017625.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sbc:SbBS512_E4525 ribosomal large subunit pseudouridine synthase F; pseudouridine synthase 4284116 12707617 EcDH1_3975 Escherichia coli DH1 pseudouridine synthase YP_006093864.1 4283244 R 536056 CDS YP_006093865.1 386597465 12707618 4284328..4285017 1 NC_017625.1 PFAM: peptidase S51 dipeptidase E; KEGG: sbc:SbBS512_E4515 dipeptidase E; dipeptidase E 4285017 12707618 EcDH1_3976 Escherichia coli DH1 dipeptidase E YP_006093865.1 4284328 D 536056 CDS YP_006093866.1 386597466 12707619 complement(4285108..4286739) 1 NC_017625.1 TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: ssn:SSON_4191 putative alpha helix protein; sodium-dependent inorganic phosphate (Pi) transporter 4286739 12707619 EcDH1_3977 Escherichia coli DH1 sodium-dependent inorganic phosphate (Pi) transporter YP_006093866.1 4285108 R 536056 CDS YP_006093867.1 386597467 12707620 complement(4286959..4290642) 1 NC_017625.1 TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; KEGG: ssn:SSON_4190 B12-dependent methionine synthase; methionine synthase 4290642 12707620 EcDH1_3978 Escherichia coli DH1 methionine synthase YP_006093867.1 4286959 R 536056 CDS YP_006093868.1 386597468 12707621 4290842..4291666 1 NC_017625.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sfx:S3646 transcriptional repressor IclR; IclR family transcriptional regulator 4291666 12707621 EcDH1_3979 Escherichia coli DH1 IclR family transcriptional regulator YP_006093868.1 4290842 D 536056 CDS YP_006093869.1 386597469 12707622 4291983..4294169 1 NC_017625.1 PFAM: ShET2 enterotoxin domain protein; KEGG: sbc:SbBS512_E4510 ankyrin-repeat protein A; ShET2 enterotoxin domain protein 4294169 12707622 EcDH1_3980 Escherichia coli DH1 ShET2 enterotoxin domain protein YP_006093869.1 4291983 D 536056 CDS YP_006093870.1 386597470 12707623 complement(4294138..4295874) 1 NC_017625.1 PFAM: Isocitrate dehydrogenase kinasephosphatase; KEGG: sbc:SbBS512_E4511 isocitrate dehydrogenase kinase/phosphatase; (isocitrate dehydrogenase) kinase 4295874 12707623 EcDH1_3981 Escherichia coli DH1 (isocitrate dehydrogenase) kinase YP_006093870.1 4294138 R 536056 CDS YP_006093871.1 386597471 12707624 complement(4296057..4297361) 1 NC_017625.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: sdy:SDY_4328 isocitrate lyase; isocitrate lyase 4297361 12707624 EcDH1_3982 Escherichia coli DH1 isocitrate lyase YP_006093871.1 4296057 R 536056 CDS YP_006093872.1 386597472 12707625 complement(4297391..4298992) 1 NC_017625.1 KEGG: sbc:SbBS512_E4508 malate synthase A; TIGRFAM: malate synthase A; PFAM: malate synthase; malate synthase A 4298992 12707625 EcDH1_3983 Escherichia coli DH1 malate synthase A YP_006093872.1 4297391 R 536056 CDS YP_006093873.1 386597473 12707626 complement(4299261..4300190) 1 NC_017625.1 PFAM: homoserine O-succinyltransferase; KEGG: sdy:SDY_4330 homoserine O-succinyltransferase; Homoserine O-succinyltransferase 4300190 12707626 EcDH1_3984 Escherichia coli DH1 Homoserine O-succinyltransferase YP_006093873.1 4299261 R 536056 CDS YP_006093874.1 386597474 12707627 4300347..4300790 1 NC_017625.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_4333 hypothetical protein; N-acetyltransferase GCN5 4300790 12707627 EcDH1_3985 Escherichia coli DH1 N-acetyltransferase GCN5 YP_006093874.1 4300347 D 536056 CDS YP_006093875.1 386597475 12707628 complement(4300853..4301236) 1 NC_017625.1 KEGG: sdy:SDY_4334 hypothetical protein; hypothetical protein 4301236 12707628 EcDH1_3986 Escherichia coli DH1 hypothetical protein YP_006093875.1 4300853 R 536056 CDS YP_006093876.1 386597476 12707633 4306938..4308527 1 NC_017625.1 KEGG: sbc:SbBS512_E4498 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4308527 12707633 EcDH1_3987 Escherichia coli DH1 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_006093876.1 4306938 D 536056 CDS YP_006093877.1 386597477 12707634 4308539..4309828 1 NC_017625.1 KEGG: sbc:SbBS512_E4496 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; phosphoribosylamine--glycine ligase 4309828 12707634 EcDH1_3988 Escherichia coli DH1 phosphoribosylamine--glycine ligase YP_006093877.1 4308539 D 536056 CDS YP_006093878.1 386597478 12707635 complement(4309825..4311150) 1 NC_017625.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sbc:SbBS512_E4497 response regulator ZraR; two component Fis family sigma54-specific transcriptional regulator 4311150 12707635 EcDH1_3989 Escherichia coli DH1 two component Fis family sigma54-specific transcriptional regulator YP_006093878.1 4309825 R 536056 CDS YP_006093879.1 386597479 12707636 complement(4311147..4312544) 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_3723 sensor protein ZraS; histidine kinase 4312544 12707636 EcDH1_3990 Escherichia coli DH1 histidine kinase YP_006093879.1 4311147 R 536056 CDS YP_006093880.1 386597480 12707637 4312651..4312779 1 NC_017625.1 hypothetical protein 4312779 12707637 EcDH1_3991 Escherichia coli DH1 hypothetical protein YP_006093880.1 4312651 D 536056 CDS YP_006093881.1 386597481 12707638 4312782..4313207 1 NC_017625.1 KEGG: sbc:SbBS512_E4493 zinc resistance-associated protein; zinc resistance-associated protein 4313207 12707638 EcDH1_3992 Escherichia coli DH1 zinc resistance-associated protein YP_006093881.1 4312782 D 536056 CDS YP_006093882.1 386597482 12707639 complement(4313209..4313844) 1 NC_017625.1 PFAM: protein of unknown function DUF1481; KEGG: sbc:SbBS512_E4492 hypothetical protein; hypothetical protein 4313844 12707639 EcDH1_3993 Escherichia coli DH1 hypothetical protein YP_006093882.1 4313209 R 536056 CDS YP_006093883.1 386597483 12707640 complement(4313917..4314189) 1 NC_017625.1 PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_3726 transcriptional regulator HU subunit alpha; histone family protein DNA-binding protein 4314189 12707640 EcDH1_3994 Escherichia coli DH1 histone family protein DNA-binding protein YP_006093883.1 4313917 R 536056 CDS YP_006093884.1 386597484 12707641 complement(4314376..4314966) 1 NC_017625.1 PFAM: protein of unknown function DUF416; KEGG: ssn:SSON_4172 hypothetical protein; hypothetical protein 4314966 12707641 EcDH1_3995 Escherichia coli DH1 hypothetical protein YP_006093884.1 4314376 R 536056 CDS YP_006093885.1 386597485 12707642 complement(4315009..4315680) 1 NC_017625.1 PFAM: Endonuclease V; KEGG: sbc:SbBS512_E4489 endonuclease V; Deoxyribonuclease V 4315680 12707642 EcDH1_3996 Escherichia coli DH1 Deoxyribonuclease V YP_006093885.1 4315009 R 536056 CDS YP_006093886.1 386597486 12707643 complement(4315690..4316754) 1 NC_017625.1 KEGG: sbc:SbBS512_E4488 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 4316754 12707643 EcDH1_3997 Escherichia coli DH1 uroporphyrinogen decarboxylase YP_006093886.1 4315690 R 536056 CDS YP_006093887.1 386597487 12707644 complement(4316794..4317567) 1 NC_017625.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: ssn:SSON_4169 NADH pyrophosphatase; NUDIX hydrolase 4317567 12707644 EcDH1_3998 Escherichia coli DH1 NUDIX hydrolase YP_006093887.1 4316794 R 536056 CDS YP_006093888.1 386597488 12707645 4317662..4318138 1 NC_017625.1 PFAM: regulator of RNA polymerase sigma(70) subunit Rsd/AlgQ; KEGG: sbc:SbBS512_E4486 regulator of sigma D; regulator of RpoD, Rsd/AlgQ 4318138 12707645 EcDH1_3999 Escherichia coli DH1 regulator of RpoD, Rsd/AlgQ YP_006093888.1 4317662 D 536056 CDS YP_006093889.1 386597489 12707646 4318371..4320266 1 NC_017625.1 PFAM: thiamine biosynthesis protein ThiC; KEGG: sbo:SBO_4015 thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 4320266 12707646 EcDH1_4000 Escherichia coli DH1 thiamine biosynthesis protein ThiC YP_006093889.1 4318371 D 536056 CDS YP_006093890.1 386597490 12707647 4320266..4320901 1 NC_017625.1 KEGG: sbc:SbBS512_E4484 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 4320901 12707647 EcDH1_4001 Escherichia coli DH1 thiamine-phosphate pyrophosphorylase YP_006093890.1 4320266 D 536056 CDS YP_006093891.1 386597491 12707648 4320894..4321649 1 NC_017625.1 TIGRFAM: thiazole biosynthesis adenylyltransferase ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sdy:SDY_3734 thiamin biosynthesis, thiazole moiety; thiazole biosynthesis adenylyltransferase ThiF 4321649 12707648 EcDH1_4002 Escherichia coli DH1 thiazole biosynthesis adenylyltransferase ThiF YP_006093891.1 4320894 D 536056 CDS YP_006093892.1 386597492 12707649 4321633..4321833 1 NC_017625.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sbc:SbBS512_E4482 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 4321833 12707649 EcDH1_4003 Escherichia coli DH1 thiamine biosynthesis protein ThiS YP_006093892.1 4321633 D 536056 CDS YP_006093893.1 386597493 12707650 4321835..4322605 1 NC_017625.1 PFAM: thiazole biosynthesis family protein; KEGG: sfv:SFV_4063 thiazole synthase; thiazole biosynthesis family protein 4322605 12707650 EcDH1_4004 Escherichia coli DH1 thiazole biosynthesis family protein YP_006093893.1 4321835 D 536056 CDS YP_006093894.1 386597494 12707651 4322602..4323735 1 NC_017625.1 TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: sdy:SDY_3737 thiamine biosynthesis protein ThiH; thiazole biosynthesis protein ThiH 4323735 12707651 EcDH1_4005 Escherichia coli DH1 thiazole biosynthesis protein ThiH YP_006093894.1 4322602 D 536056 CDS YP_006093895.1 386597495 12707652 complement(4324145..4324684) 1 NC_017625.1 KEGG: sbo:SBO_4009 heat shock protein; heat shock protein 4324684 12707652 EcDH1_4006 Escherichia coli DH1 heat shock protein YP_006093895.1 4324145 R 536056 CDS YP_006093896.1 386597496 12707653 complement(4324897..4329120) 1 NC_017625.1 KEGG: sbo:SBO_4008 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 4329120 12707653 EcDH1_4007 Escherichia coli DH1 DNA-directed RNA polymerase subunit beta' YP_006093896.1 4324897 R 536056 CDS YP_006093897.1 386597497 12707654 complement(4329197..4333225) 1 NC_017625.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase beta subunit; KEGG: sbc:SbBS512_E4475 DNA-directed RNA polymerase, beta subunit; DNA-directed RNA polymerase subunit beta 4333225 12707654 EcDH1_4008 Escherichia coli DH1 DNA-directed RNA polymerase subunit beta YP_006093897.1 4329197 R 536056 CDS YP_006093898.1 386597498 12707655 complement(4333545..4333910) 1 NC_017625.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: sdy:SDY_3742 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 4333910 12707655 EcDH1_4009 Escherichia coli DH1 50S ribosomal protein L7/L12 YP_006093898.1 4333545 R 536056 CDS YP_006093899.1 386597499 12707656 complement(4333977..4334474) 1 NC_017625.1 PFAM: ribosomal protein L10; KEGG: sdy:SDY_3743 50S ribosomal protein L10; 50S ribosomal protein L10 4334474 12707656 EcDH1_4010 Escherichia coli DH1 50S ribosomal protein L10 YP_006093899.1 4333977 R 536056 CDS YP_006093900.1 386597500 12707657 complement(4334887..4335591) 1 NC_017625.1 PFAM: ribosomal protein L1; KEGG: sdy:SDY_3744 50S ribosomal protein L1; 50S ribosomal protein L1 4335591 12707657 EcDH1_4011 Escherichia coli DH1 50S ribosomal protein L1 YP_006093900.1 4334887 R 536056 CDS YP_006093901.1 386597501 12707658 complement(4335595..4336023) 1 NC_017625.1 PFAM: ribosomal protein L11; KEGG: sdy:SDY_3745 50S ribosomal protein L11; 50S ribosomal protein L11 4336023 12707658 EcDH1_4012 Escherichia coli DH1 50S ribosomal protein L11 YP_006093901.1 4335595 R 536056 CDS YP_006093902.1 386597502 12707659 complement(4336182..4336727) 1 NC_017625.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: sdy:SDY_3746 transcription antitermination protein NusG; NusG antitermination factor 4336727 12707659 EcDH1_4013 Escherichia coli DH1 NusG antitermination factor YP_006093902.1 4336182 R 536056 CDS YP_006093903.1 386597503 12707660 complement(4336729..4337112) 1 NC_017625.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: sbc:SbBS512_E4469 preprotein translocase subunit SecE; Preprotein translocase subunit SecE 4337112 12707660 EcDH1_4014 Escherichia coli DH1 Preprotein translocase subunit SecE YP_006093903.1 4336729 R 536056 CDS YP_006093904.1 386597504 12707661 complement(4337342..4338526) 1 NC_017625.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: sbc:SbBS512_E4468 translation elongation factor Tu; translation elongation factor Tu 4338526 12707661 EcDH1_4015 Escherichia coli DH1 translation elongation factor Tu YP_006093904.1 4337342 R 536056 CDS YP_006093905.1 386597505 12707666 4339468..4340394 1 NC_017625.1 TIGRFAM: pantothenate kinase; KEGG: ssn:SSON_4147 pantothenate kinase; pantothenate kinase 4340394 12707666 EcDH1_4016 Escherichia coli DH1 pantothenate kinase YP_006093905.1 4339468 D 536056 CDS YP_006093906.1 386597506 12707667 complement(4340423..4341388) 1 NC_017625.1 KEGG: sbc:SbBS512_E4461 bifunctional protein BirA; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; biotin operon repressor; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; bifunctional biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase BirA 4341388 12707667 EcDH1_4017 Escherichia coli DH1 bifunctional biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase BirA YP_006093906.1 4340423 R 536056 CDS YP_006093907.1 386597507 12707668 complement(4341385..4342413) 1 NC_017625.1 KEGG: sdy:SDY_3756 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 4342413 12707668 EcDH1_4018 Escherichia coli DH1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_006093907.1 4341385 R 536056 CDS YP_006093908.1 386597508 12707673 complement(4348185..4349042) 1 NC_017625.1 KEGG: sdy:SDY_3761 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 4349042 12707673 EcDH1_4019 Escherichia coli DH1 glutamate racemase YP_006093908.1 4348185 R 536056 CDS YP_006093909.1 386597509 12707674 complement(4348987..4350831) 1 NC_017625.1 TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ssn:SSON_4139 vitamin B12/cobalamin outer membrane transporter; TonB-dependent vitamin B12 receptor 4350831 12707674 EcDH1_4020 Escherichia coli DH1 TonB-dependent vitamin B12 receptor YP_006093909.1 4348987 R 536056 CDS YP_006093910.1 386597510 12707675 4351200..4352300 1 NC_017625.1 KEGG: sbc:SbBS512_E4451 tRNA (uracil-5-)-methyltransferase; TIGRFAM: tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase; tRNA (uracil-5-)-methyltransferase 4352300 12707675 EcDH1_4021 Escherichia coli DH1 tRNA (uracil-5-)-methyltransferase YP_006093910.1 4351200 D 536056 CDS YP_006093911.1 386597511 12707676 complement(4352340..4352699) 1 NC_017625.1 PFAM: protein of unknown function DUF1422; KEGG: sbc:SbBS512_E4450 putative inner membrane protein; hypothetical protein 4352699 12707676 EcDH1_4022 Escherichia coli DH1 hypothetical protein YP_006093911.1 4352340 R 536056 CDS YP_006093912.1 386597512 12707677 complement(4352699..4353403) 1 NC_017625.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_3765 DNA-binding transcriptional repressor FabR; TetR family transcriptional regulator 4353403 12707677 EcDH1_4023 Escherichia coli DH1 TetR family transcriptional regulator YP_006093912.1 4352699 R 536056 CDS YP_006093913.1 386597513 12707678 4353680..4355080 1 NC_017625.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sbc:SbBS512_E4447 soluble pyridine nucleotide transhydrogenase; pyridine nucleotide-disulfide oxidoreductase dimerization region 4355080 12707678 EcDH1_4024 Escherichia coli DH1 pyridine nucleotide-disulfide oxidoreductase dimerization region YP_006093913.1 4353680 D 536056 CDS YP_006093914.1 386597514 12707679 complement(4355063..4355980) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3796 DNA-binding transcriptional regulator OxyR; LysR family transcriptional regulator 4355980 12707679 EcDH1_4025 Escherichia coli DH1 LysR family transcriptional regulator YP_006093914.1 4355063 R 536056 CDS YP_006093915.1 386597515 12707680 complement(4356247..4357620) 1 NC_017625.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: sbc:SbBS512_E4446 argininosuccinate lyase; argininosuccinate lyase 4357620 12707680 EcDH1_4026 Escherichia coli DH1 argininosuccinate lyase YP_006093915.1 4356247 R 536056 CDS YP_006093916.1 386597516 12707681 complement(4357681..4358457) 1 NC_017625.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: sbc:SbBS512_E4445 acetylglutamate kinase; acetylglutamate kinase 4358457 12707681 EcDH1_4027 Escherichia coli DH1 acetylglutamate kinase YP_006093916.1 4357681 R 536056 CDS YP_006093917.1 386597517 12707682 complement(4358465..4359469) 1 NC_017625.1 KEGG: ssn:SSON_4131 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 4359469 12707682 EcDH1_4028 Escherichia coli DH1 N-acetyl-gamma-glutamyl-phosphate reductase YP_006093917.1 4358465 R 536056 CDS YP_006093918.1 386597518 12707683 4359623..4360774 1 NC_017625.1 KEGG: sbc:SbBS512_E4443 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; acetylornithine deacetylase 4360774 12707683 EcDH1_4029 Escherichia coli DH1 acetylornithine deacetylase YP_006093918.1 4359623 D 536056 CDS YP_006093919.1 386597519 12707684 4361372..4364023 1 NC_017625.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: sbc:SbBS512_E4442 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 4364023 12707684 EcDH1_4030 Escherichia coli DH1 phosphoenolpyruvate carboxylase YP_006093919.1 4361372 D 536056 CDS YP_006093920.1 386597520 12707685 4364205..4365938 1 NC_017625.1 PFAM: sulfatase; KEGG: sbc:SbBS512_E4441 putative sulfatase; sulfatase 4365938 12707685 EcDH1_4031 Escherichia coli DH1 sulfatase YP_006093920.1 4364205 D 536056 CDS YP_006093921.1 386597521 12707686 4366153..4367004 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sdy:SDY_3789 putative AraC-type regulatory protein; AraC family transcriptional regulator 4367004 12707686 EcDH1_4032 Escherichia coli DH1 AraC family transcriptional regulator YP_006093921.1 4366153 D 536056 CDS YP_006093922.1 386597522 12707687 complement(4366991..4367332) 1 NC_017625.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sbc:SbBS512_E4440 PTS system, fructose family, IIB component; PTS system fructose-specific transporter subunit IIB 4367332 12707687 EcDH1_4033 Escherichia coli DH1 PTS system fructose-specific transporter subunit IIB YP_006093922.1 4366991 R 536056 CDS YP_006093923.1 386597523 12707688 complement(4367334..4368212) 1 NC_017625.1 KEGG: ssn:SSON_4125 pyruvate formate lyase II activase; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family 4368212 12707688 EcDH1_4034 Escherichia coli DH1 glycyl-radical enzyme activating protein family YP_006093923.1 4367334 R 536056 CDS YP_006093924.1 386597524 12707689 complement(4368178..4370475) 1 NC_017625.1 KEGG: sfv:SFV_4020 putative formate acetyltransferase 2; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; pyruvate formate-lyase 4370475 12707689 EcDH1_4035 Escherichia coli DH1 pyruvate formate-lyase YP_006093924.1 4368178 R 536056 CDS YP_006093925.1 386597525 12707690 complement(4370526..4370846) 1 NC_017625.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sdy:SDY_3785 PTS system fructose-like IIB component 1; PTS system fructose-specific transporter subunit IIB 4370846 12707690 EcDH1_4036 Escherichia coli DH1 PTS system fructose-specific transporter subunit IIB YP_006093925.1 4370526 R 536056 CDS YP_006093926.1 386597526 12707691 complement(4370861..4371940) 1 NC_017625.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: sfv:SFV_4018 putative fructose-like permease EIIC subunit 2; PTS system fructose subfamily transporter subunit IIC 4371940 12707691 EcDH1_4037 Escherichia coli DH1 PTS system fructose subfamily transporter subunit IIC YP_006093926.1 4370861 R 536056 CDS YP_006093927.1 386597527 12707692 4372249..4374750 1 NC_017625.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoryl transfer system HPr; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: sbc:SbBS512_E4434 multi-phosphoryl transfer protein 2; phosphoenolpyruvate-protein phosphotransferase 4374750 12707692 EcDH1_4038 Escherichia coli DH1 phosphoenolpyruvate-protein phosphotransferase YP_006093927.1 4372249 D 536056 CDS YP_006093928.1 386597528 12707693 4374762..4375424 1 NC_017625.1 KEGG: ssn:SSON_4120 fructose-6-phosphate aldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 4375424 12707693 EcDH1_4039 Escherichia coli DH1 transaldolase YP_006093928.1 4374762 D 536056 CDS YP_006093929.1 386597529 12707694 4375435..4376538 1 NC_017625.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: sbc:SbBS512_E4432 glycerol dehydrogenase; iron-containing alcohol dehydrogenase 4376538 12707694 EcDH1_4040 Escherichia coli DH1 iron-containing alcohol dehydrogenase YP_006093929.1 4375435 D 536056 CDS YP_006093930.1 386597530 12707695 4376813..4377430 1 NC_017625.1 PFAM: protein of unknown function DUF1287; KEGG: ssn:SSON_4118 hypothetical protein; hypothetical protein 4377430 12707695 EcDH1_4041 Escherichia coli DH1 hypothetical protein YP_006093930.1 4376813 D 536056 CDS YP_006093931.1 386597531 12707696 complement(4377457..4378362) 1 NC_017625.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ssn:SSON_4117 hypothetical protein; hypothetical protein 4378362 12707696 EcDH1_4042 Escherichia coli DH1 hypothetical protein YP_006093931.1 4377457 R 536056 CDS YP_006093932.1 386597532 12707697 complement(4378455..4380635) 1 NC_017625.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: sfv:SFV_4012 catalase; hydroperoxidase HPI(I); catalase/peroxidase HPI 4380635 12707697 EcDH1_4043 Escherichia coli DH1 catalase/peroxidase HPI YP_006093932.1 4378455 R 536056 CDS YP_006093933.1 386597533 12707698 complement(4380964..4381854) 1 NC_017625.1 KEGG: sbc:SbBS512_E4428 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4381854 12707698 EcDH1_4044 Escherichia coli DH1 5,10-methylenetetrahydrofolate reductase YP_006093933.1 4380964 R 536056 CDS YP_006093934.1 386597534 12707699 complement(4382203..4384635) 1 NC_017625.1 KEGG: sbo:SBO_3960 bifunctional aspartate kinase II/homoserine dehydrogenase II; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; aspartate kinase 4384635 12707699 EcDH1_4045 Escherichia coli DH1 aspartate kinase YP_006093934.1 4382203 R 536056 CDS YP_006093935.1 386597535 12707700 complement(4384638..4385798) 1 NC_017625.1 KEGG: sbo:SBO_3959 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine (thiol)-lyase 4385798 12707700 EcDH1_4046 Escherichia coli DH1 O-succinylhomoserine (thiol)-lyase YP_006093935.1 4384638 R 536056 CDS YP_006093936.1 386597536 12707701 4386075..4386392 1 NC_017625.1 PFAM: Methionine repressor MetJ; KEGG: sdy:SDY_3773 transcriptional repressor protein MetJ; methionine repressor MetJ 4386392 12707701 EcDH1_4047 Escherichia coli DH1 methionine repressor MetJ YP_006093936.1 4386075 D 536056 CDS YP_006093937.1 386597537 12707702 4386576..4387184 1 NC_017625.1 PFAM: protein of unknown function DUF1105; KEGG: sdy:SDY_3772 hypothetical protein; hypothetical protein 4387184 12707702 EcDH1_4048 Escherichia coli DH1 hypothetical protein YP_006093937.1 4386576 D 536056 CDS YP_006093938.1 386597538 12707703 complement(4387245..4387457) 1 NC_017625.1 PFAM: ribosomal protein L31; KEGG: sdy:SDY_3801 50S ribosomal protein L31; 50S ribosomal protein L31 4387457 12707703 EcDH1_4049 Escherichia coli DH1 50S ribosomal protein L31 YP_006093938.1 4387245 R 536056 CDS YP_006093939.1 386597539 12707704 4387660..4389858 1 NC_017625.1 KEGG: sbo:SBO_3952 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 4389858 12707704 EcDH1_4050 Escherichia coli DH1 primosomal protein N' YP_006093939.1 4387660 D 536056 CDS YP_006093940.1 386597540 12707705 4390014..4391039 1 NC_017625.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E4416 transcriptional repressor CytR; LacI family transcriptional regulator 4391039 12707705 EcDH1_4051 Escherichia coli DH1 LacI family transcriptional regulator YP_006093940.1 4390014 D 536056 CDS YP_006093941.1 386597541 12707706 4391236..4392090 1 NC_017625.1 TIGRFAM: cell division protein FtsN; PFAM: Sporulation domain protein; KEGG: sbc:SbBS512_E4415 cell division protein FtsN; cell division protein FtsN 4392090 12707706 EcDH1_4052 Escherichia coli DH1 cell division protein FtsN YP_006093941.1 4391236 D 536056 CDS YP_006093942.1 386597542 12707707 4392183..4392713 1 NC_017625.1 PFAM: 20S proteasome A and B subunits; KEGG: sdy:SDY_3805 ATP-dependent protease peptidase subunit; 20S proteasome A and B subunits 4392713 12707707 EcDH1_4053 Escherichia coli DH1 20S proteasome A and B subunits YP_006093942.1 4392183 D 536056 CDS YP_006093943.1 386597543 12707708 4392723..4394054 1 NC_017625.1 KEGG: sbo:SBO_3948 ATP-dependent protease ATP-binding subunit; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU 4394054 12707708 EcDH1_4054 Escherichia coli DH1 heat shock protein HslVU, ATPase subunit HslU YP_006093943.1 4392723 D 536056 CDS YP_006093944.1 386597544 12707709 4394121..4395047 1 NC_017625.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: sbc:SbBS512_E4412 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4395047 12707709 EcDH1_4055 Escherichia coli DH1 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_006093944.1 4394121 D 536056 CDS YP_006093945.1 386597545 12707710 4395140..4395625 1 NC_017625.1 TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: sbc:SbBS512_E4411 regulator of ribonuclease activity A; ribonuclease activity A regulator 4395625 12707710 EcDH1_4056 Escherichia coli DH1 ribonuclease activity A regulator YP_006093945.1 4395140 D 536056 CDS YP_006093946.1 386597546 12707711 complement(4395710..4395949) 1 NC_017625.1 PFAM: protein of unknown function DUF904; KEGG: sdy:SDY_3816 hypothetical protein; hypothetical protein 4395949 12707711 EcDH1_4057 Escherichia coli DH1 hypothetical protein YP_006093946.1 4395710 R 536056 CDS YP_006093947.1 386597547 12707712 4396380..4397225 1 NC_017625.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: ssn:SSON_4096 facilitated diffusion of glycerol; MIP family channel protein 4397225 12707712 EcDH1_4058 Escherichia coli DH1 MIP family channel protein YP_006093947.1 4396380 D 536056 CDS YP_006093948.1 386597548 12707713 4397248..4398756 1 NC_017625.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: sbo:SBO_3943 glycerol kinase; glycerol kinase 4398756 12707713 EcDH1_4059 Escherichia coli DH1 glycerol kinase YP_006093948.1 4397248 D 536056 CDS YP_006093949.1 386597549 12707714 4398762..4399901 1 NC_017625.1 TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: sek:SSPA3655 putative glycerol metabolic protein; fructose-1,6-bisphosphatase 4399901 12707714 EcDH1_4060 Escherichia coli DH1 fructose-1,6-bisphosphatase YP_006093949.1 4398762 D 536056 CDS YP_006093950.1 386597550 12707715 4399998..4400744 1 NC_017625.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sdy:SDY_3820 ferredoxin-NADP reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4400744 12707715 EcDH1_4061 Escherichia coli DH1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_006093950.1 4399998 D 536056 CDS YP_006093951.1 386597551 12707716 complement(4400749..4401177) 1 NC_017625.1 PFAM: UspA domain protein; KEGG: sbc:SbBS512_E4405 universal stress protein D; UspA domain-containing protein 4401177 12707716 EcDH1_4062 Escherichia coli DH1 UspA domain-containing protein YP_006093951.1 4400749 R 536056 CDS YP_006093952.1 386597552 12707717 complement(4401204..4401503) 1 NC_017625.1 PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E4404 hypothetical protein; hypothetical protein 4401503 12707717 EcDH1_4063 Escherichia coli DH1 hypothetical protein YP_006093952.1 4401204 R 536056 CDS YP_006093953.1 386597553 12707718 complement(4401715..4402155) 1 NC_017625.1 PFAM: protein of unknown function DUF805; KEGG: ssn:SSON_4090 hypothetical protein; hypothetical protein 4402155 12707718 EcDH1_4064 Escherichia coli DH1 hypothetical protein YP_006093953.1 4401715 R 536056 CDS YP_006093954.1 386597554 12707719 4402256..4402855 1 NC_017625.1 PFAM: protein of unknown function DUF1454; KEGG: sbc:SbBS512_E4400 hypothetical protein; hypothetical protein 4402855 12707719 EcDH1_4065 Escherichia coli DH1 hypothetical protein YP_006093954.1 4402256 D 536056 CDS YP_006093955.1 386597555 12707720 4402963..4403730 1 NC_017625.1 PFAM: triosephosphate isomerase; KEGG: sdy:SDY_3826 triosephosphate isomerase; Triose-phosphate isomerase 4403730 12707720 EcDH1_4066 Escherichia coli DH1 Triose-phosphate isomerase YP_006093955.1 4402963 D 536056 CDS YP_006093956.1 386597556 12707721 complement(4403785..4404540) 1 NC_017625.1 PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: sbo:SBO_3935 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol diphosphatase 4404540 12707721 EcDH1_4067 Escherichia coli DH1 CDP-diacylglycerol diphosphatase YP_006093956.1 4403785 R 536056 CDS YP_006093957.1 386597557 12707722 complement(4404647..4405636) 1 NC_017625.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_4086 sulfate transporter subunit; sulfate ABC transporter substrate-binding protein 4405636 12707722 EcDH1_4068 Escherichia coli DH1 sulfate ABC transporter substrate-binding protein YP_006093957.1 4404647 R 536056 CDS YP_006093958.1 386597558 12707723 complement(4405956..4406918) 1 NC_017625.1 KEGG: sdy:SDY_3831 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase; 6-phosphofructokinase 4406918 12707723 EcDH1_4069 Escherichia coli DH1 6-phosphofructokinase YP_006093958.1 4405956 R 536056 CDS YP_006093959.1 386597559 12707724 complement(4407099..4408001) 1 NC_017625.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sdy:SDY_3832 ferrous iron efflux protein F; cation diffusion facilitator family transporter 4408001 12707724 EcDH1_4070 Escherichia coli DH1 cation diffusion facilitator family transporter YP_006093959.1 4407099 R 536056 CDS YP_006093960.1 386597560 12707725 complement(4408150..4408650) 1 NC_017625.1 PFAM: protein of unknown function Spy-related; KEGG: sdy:SDY_3833 periplasmic repressor CpxP; hypothetical protein 4408650 12707725 EcDH1_4071 Escherichia coli DH1 hypothetical protein YP_006093960.1 4408150 R 536056 CDS YP_006093961.1 386597561 12707726 4408800..4409498 1 NC_017625.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_3834 DNA-binding response regulator in two-component regulatory system with CpxA; winged helix family two component transcriptional regulator 4409498 12707726 EcDH1_4072 Escherichia coli DH1 winged helix family two component transcriptional regulator YP_006093961.1 4408800 D 536056 CDS YP_006093962.1 386597562 12707727 4409495..4410868 1 NC_017625.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sbo:SBO_3929 two-component sensor protein; histidine kinase 4410868 12707727 EcDH1_4073 Escherichia coli DH1 histidine kinase YP_006093962.1 4409495 D 536056 CDS YP_006093963.1 386597563 12707728 complement(4410974..4411648) 1 NC_017625.1 PFAM: 3-alpha domain protein; MOSC domain containing protein; KEGG: sbo:SBO_3928 hypothetical protein; MOSC domain-containing protein 4411648 12707728 EcDH1_4074 Escherichia coli DH1 MOSC domain-containing protein YP_006093963.1 4410974 R 536056 CDS YP_006093964.1 386597564 12707729 complement(4411797..4412780) 1 NC_017625.1 TIGRFAM: 2-keto-3-deoxygluconate transporter; PFAM: 2-keto-3-deoxygluconate permease; KEGG: ssn:SSON_4079 2-keto-3-deoxygluconate permease; 2-keto-3-deoxygluconate transporter 4412780 12707729 EcDH1_4075 Escherichia coli DH1 2-keto-3-deoxygluconate transporter YP_006093964.1 4411797 R 536056 CDS YP_006093965.1 386597565 12707730 complement(4413040..4413660) 1 NC_017625.1 PFAM: manganese and iron superoxide dismutase; KEGG: sbc:SbBS512_E4387 superoxide dismutase (Mn); Superoxide dismutase 4413660 12707730 EcDH1_4076 Escherichia coli DH1 Superoxide dismutase YP_006093965.1 4413040 R 536056 CDS YP_006093966.1 386597566 12707731 4413945..4414979 1 NC_017625.1 TIGRFAM: L-rhamnose-proton symporter, RhaT family, DMT superfamily; PFAM: RhaT l-rhamnose-proton symport 2; KEGG: sbc:SbBS512_E4385 L-rhamnose-proton symporter; L-rhamnose-proton symporter 4414979 12707731 EcDH1_4077 Escherichia coli DH1 L-rhamnose-proton symporter YP_006093966.1 4413945 D 536056 CDS YP_006093967.1 386597567 12707732 complement(4414976..4415914) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: sfx:S3765 transcriptional activator RhaR; AraC family transcriptional regulator 4415914 12707732 EcDH1_4078 Escherichia coli DH1 AraC family transcriptional regulator YP_006093967.1 4414976 R 536056 CDS YP_006093968.1 386597568 12707733 complement(4415898..4416734) 1 NC_017625.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sbo:SBO_3923 positive regulator for rhaBAD operon; AraC family transcriptional regulator 4416734 12707733 EcDH1_4079 Escherichia coli DH1 AraC family transcriptional regulator YP_006093968.1 4415898 R 536056 CDS YP_006093969.1 386597569 12707734 4417022..4418491 1 NC_017625.1 TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ssn:SSON_4074 rhamnulokinase; rhamnulokinase 4418491 12707734 EcDH1_4080 Escherichia coli DH1 rhamnulokinase YP_006093969.1 4417022 D 536056 CDS YP_006093970.1 386597570 12707735 4418488..4419747 1 NC_017625.1 PFAM: L-rhamnose isomerase; KEGG: sbo:SBO_3921 L-rhamnose isomerase; L-rhamnose isomerase 4419747 12707735 EcDH1_4081 Escherichia coli DH1 L-rhamnose isomerase YP_006093970.1 4418488 D 536056 CDS YP_006093971.1 386597571 12707736 4420198..4421022 1 NC_017625.1 KEGG: ssn:SSON_4072 rhamnulose-1-phosphate aldolase; TIGRFAM: rhamnulose-1-phosphate aldolase; PFAM: class II aldolase/adducin family protein; rhamnulose-1-phosphate aldolase 4421022 12707736 EcDH1_4082 Escherichia coli DH1 rhamnulose-1-phosphate aldolase YP_006093971.1 4420198 D 536056 CDS YP_006093972.1 386597572 12707737 4421032..4421346 1 NC_017625.1 TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: sfv:SFV_3594 hypothetical protein; L-rhamnose 1-epimerase 4421346 12707737 EcDH1_4083 Escherichia coli DH1 L-rhamnose 1-epimerase YP_006093972.1 4421032 D 536056 CDS YP_006093973.1 386597573 12707738 4421647..4422093 1 NC_017625.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sbo:SBO_3916 PTS system fructose-specific IIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN 4422093 12707738 EcDH1_4084 Escherichia coli DH1 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_006093973.1 4421647 D 536056 CDS YP_006093974.1 386597574 12707739 4422104..4423555 1 NC_017625.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sbo:SBO_3915 putative PTS transporter components IIBC; PTS system fructose subfamily transporter subunit IIC 4423555 12707739 EcDH1_4085 Escherichia coli DH1 PTS system fructose subfamily transporter subunit IIC YP_006093974.1 4422104 D 536056 CDS YP_006093975.1 386597575 12707740 4423545..4424615 1 NC_017625.1 PFAM: peptidase M18 aminopeptidase I; peptidase M42 family protein; KEGG: sfv:SFV_3597 putative fructose-specific phosphotransferase system protein FrvX; cellulase 4424615 12707740 EcDH1_4086 Escherichia coli DH1 cellulase YP_006093975.1 4423545 D 536056 CDS YP_006093976.1 386597576 12707741 4424615..4426363 1 NC_017625.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Helix-turn-helix type 11 domain protein; KEGG: ssn:SSON_4067 putative frv operon regulatory protein; transcriptional antiterminator BglG 4426363 12707741 EcDH1_4087 Escherichia coli DH1 transcriptional antiterminator BglG YP_006093976.1 4424615 D 536056 CDS YP_006093977.1 386597577 12707742 complement(4426413..4427468) 1 NC_017625.1 KEGG: sbc:SbBS512_E4376 putative lipoprotein; putative lipoprotein 4427468 12707742 EcDH1_4088 Escherichia coli DH1 putative lipoprotein YP_006093977.1 4426413 R 536056 CDS YP_006093978.1 386597578 12707743 complement(4427621..4428454) 1 NC_017625.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: sbo:SBO_3909 formate dehydrogenase accessory protein; formate dehydrogenase family accessory protein FdhD 4428454 12707743 EcDH1_4089 Escherichia coli DH1 formate dehydrogenase family accessory protein FdhD YP_006093978.1 4427621 R 536056 CDS YP_006093979.1 386597579 12707744 4428648..4431698 1 NC_017625.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ssn:SSON_4063 formate dehydrogenase-O, major subunit; formate dehydrogenase subunit alpha 4431698 12707744 EcDH1_4090 Escherichia coli DH1 formate dehydrogenase subunit alpha YP_006093979.1 4428648 D 536056 CDS YP_006093980.1 386597580 12707745 4431711..4432613 1 NC_017625.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: sbc:SbBS512_E4372 formate dehydrogenase-O, iron-sulfur subunit; formate dehydrogenase subunit beta 4432613 12707745 EcDH1_4091 Escherichia coli DH1 formate dehydrogenase subunit beta YP_006093980.1 4431711 D 536056 CDS YP_006093981.1 386597581 12707746 4432610..4433245 1 NC_017625.1 TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: sdy:SDY_3851 formate dehydrogenase-O subunit gamma; formate dehydrogenase subunit gamma 4433245 12707746 EcDH1_4092 Escherichia coli DH1 formate dehydrogenase subunit gamma YP_006093981.1 4432610 D 536056 CDS YP_006093982.1 386597582 12707747 4433242..4434171 1 NC_017625.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: sdy:SDY_3852 formate dehydrogenase accessory protein FdhE; formate dehydrogenase accessory protein FdhE 4434171 12707747 EcDH1_4093 Escherichia coli DH1 formate dehydrogenase accessory protein FdhE YP_006093982.1 4433242 D 536056 CDS YP_006093983.1 386597583 12707748 complement(4434319..4434501) 1 NC_017625.1 KEGG: sfv:SFV_0528 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; hypothetical protein 4434501 12707748 EcDH1_4094 Escherichia coli DH1 hypothetical protein YP_006093983.1 4434319 R 536056 CDS YP_006093984.1 386597584 12707749 complement(4434501..4434743) 1 NC_017625.1 KEGG: sbc:SbBS512_E4369 hypothetical protein; hypothetical protein 4434743 12707749 EcDH1_4095 Escherichia coli DH1 hypothetical protein YP_006093984.1 4434501 R 536056 CDS YP_006093985.1 386597585 12707750 complement(4434961..4435179) 1 NC_017625.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: sfv:SFV_3606 hypothetical protein; CopG family transcriptional regulator 4435179 12707750 EcDH1_4096 Escherichia coli DH1 CopG family transcriptional regulator YP_006093985.1 4434961 R 536056 CDS YP_006093986.1 386597586 12707751 complement(4435514..4435621) 1 NC_017625.1 hypothetical protein 4435621 12707751 EcDH1_4097 Escherichia coli DH1 hypothetical protein YP_006093986.1 4435514 R 536056 CDS YP_006093987.1 386597587 12707752 complement(4436032..4436973) 1 NC_017625.1 TIGRFAM: thioesterase domain protein; PFAM: GCN5-related N-acetyltransferase; Thioesterase putative; KEGG: sbo:SBO_3902 putative acetyltransferase; thioesterase domain-containing protein 4436973 12707752 EcDH1_4098 Escherichia coli DH1 thioesterase domain-containing protein YP_006093987.1 4436032 R 536056 CDS YP_006093988.1 386597588 12707753 complement(4437018..4437455) 1 NC_017625.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: sbc:SbBS512_E4365 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 4437455 12707753 EcDH1_4099 Escherichia coli DH1 D-tyrosyl-tRNA(Tyr) deacylase YP_006093988.1 4437018 R 536056 CDS YP_006093989.1 386597589 12707754 complement(4437452..4438324) 1 NC_017625.1 PFAM: ribonuclease BN; KEGG: sdy:SDY_3857 ribonuclease BN; ribonuclease BN 4438324 12707754 EcDH1_4100 Escherichia coli DH1 ribonuclease BN YP_006093989.1 4437452 R 536056 CDS YP_006093990.1 386597590 12707755 complement(4438318..4438917) 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_4054 phosphatase; HAD-superfamily hydrolase 4438917 12707755 EcDH1_4101 Escherichia coli DH1 HAD-superfamily hydrolase YP_006093990.1 4438318 R 536056 CDS YP_006093991.1 386597591 12707756 complement(4439016..4439801) 1 NC_017625.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sfv:SFV_3615 putative DeoR-type transcriptional regulator; DeoR family transcriptional regulator 4439801 12707756 EcDH1_4102 Escherichia coli DH1 DeoR family transcriptional regulator YP_006093991.1 4439016 R 536056 CDS YP_006093992.1 386597592 12707757 complement(4439835..4440731) 1 NC_017625.1 PFAM: PfkB domain protein; KEGG: sfx:S3791 putative kinase; PfkB domain-containing protein 4440731 12707757 EcDH1_4103 Escherichia coli DH1 PfkB domain-containing protein YP_006093992.1 4439835 R 536056 CDS YP_006093993.1 386597593 12707758 4440899..4441795 1 NC_017625.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sfv:SFV_3617 putative dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 4441795 12707758 EcDH1_4104 Escherichia coli DH1 3-hydroxyisobutyrate dehydrogenase YP_006093993.1 4440899 D 536056 CDS YP_006093994.1 386597594 12707759 4441819..4442697 1 NC_017625.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sfx:S3793 putative aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 4442697 12707759 EcDH1_4105 Escherichia coli DH1 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_006093994.1 4441819 D 536056 CDS YP_006093995.1 386597595 12707760 4442714..4443955 1 NC_017625.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: sfx:S3794 hypothetical protein; N-acylglucosamine 2-epimerase 4443955 12707760 EcDH1_4106 Escherichia coli DH1 N-acylglucosamine 2-epimerase YP_006093995.1 4442714 D 536056 CDS YP_006093996.1 386597596 12707761 4444069..4444995 1 NC_017625.1 PFAM: Aldose 1-epimerase; KEGG: sfv:SFV_3620 putative aldose-1-epimerase; aldose 1-epimerase 4444995 12707761 EcDH1_4107 Escherichia coli DH1 aldose 1-epimerase YP_006093996.1 4444069 D 536056 CDS YP_006093997.1 386597597 12707762 4445194..4447230 1 NC_017625.1 PFAM: glycoside hydrolase family 31; KEGG: sfv:SFV_3621 alpha-glucosidase; glycoside hydrolase family protein 4447230 12707762 EcDH1_4108 Escherichia coli DH1 glycoside hydrolase family protein YP_006093997.1 4445194 D 536056 CDS YP_006093998.1 386597598 12707763 4447276..4448661 1 NC_017625.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sfv:SFV_3622 putative permease; sugar (Glycoside-Pentoside-Hexuronide) transporter 4448661 12707763 EcDH1_4109 Escherichia coli DH1 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_006093998.1 4447276 D 536056 CDS YP_006093999.1 386597599 12707764 4448704..4450107 1 NC_017625.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sfx:S3798 putative permease; sugar (Glycoside-Pentoside-Hexuronide) transporter 4450107 12707764 EcDH1_4110 Escherichia coli DH1 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_006093999.1 4448704 D 536056 CDS YP_006094000.1 386597600 12707765 4450175..4450867 1 NC_017625.1 PFAM: Oligogalacturonate-specific porin; KEGG: sew:SeSA_A4226 porin OmpL; Oligogalacturonate-specific porin 4450867 12707765 EcDH1_4111 Escherichia coli DH1 Oligogalacturonate-specific porin YP_006094000.1 4450175 D 536056 CDS YP_006094001.1 386597601 12707766 complement(4450958..4452223) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_3626 putative resistance protein; major facilitator superfamily protein 4452223 12707766 EcDH1_4112 Escherichia coli DH1 major facilitator superfamily protein YP_006094001.1 4450958 R 536056 CDS YP_006094002.1 386597602 12707767 complement(4452325..4453305) 1 NC_017625.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfx:S3803 hypothetical protein; xylose isomerase domain-containing protein 4453305 12707767 EcDH1_4113 Escherichia coli DH1 xylose isomerase domain-containing protein YP_006094002.1 4452325 R 536056 CDS YP_006094003.1 386597603 12707768 complement(4453313..4454023) 1 NC_017625.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sfv:SFV_3628 putative transcriptional regulator; GntR family transcriptional regulator 4454023 12707768 EcDH1_4114 Escherichia coli DH1 GntR family transcriptional regulator YP_006094003.1 4453313 R 536056 CDS YP_006094004.1 386597604 12707769 complement(4454240..4456063) 1 NC_017625.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: sdy:SDY_3872 GTP-binding protein; GTP-binding protein TypA 4456063 12707769 EcDH1_4115 Escherichia coli DH1 GTP-binding protein TypA YP_006094004.1 4454240 R 536056 CDS YP_006094005.1 386597605 12707770 4456436..4457845 1 NC_017625.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sdy:SDY_3873 glutamine synthetase; glutamine synthetase, type I 4457845 12707770 EcDH1_4116 Escherichia coli DH1 glutamine synthetase, type I YP_006094005.1 4456436 D 536056 CDS YP_006094006.1 386597606 12707771 4458131..4459180 1 NC_017625.1 KEGG: ssn:SSON_4041 nitrogen regulation protein NR(II); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 4459180 12707771 EcDH1_4117 Escherichia coli DH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_006094006.1 4458131 D 536056 CDS YP_006094007.1 386597607 12707772 4459192..4460601 1 NC_017625.1 KEGG: sdy:SDY_3875 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Fis family nitrogen metabolism transcriptional regulator NtrC 4460601 12707772 EcDH1_4118 Escherichia coli DH1 Fis family nitrogen metabolism transcriptional regulator NtrC YP_006094007.1 4459192 D 536056 CDS YP_006094008.1 386597608 12707773 4460713..4460823 1 NC_017625.1 KEGG: ses:SARI_03655 hypothetical protein; hypothetical protein 4460823 12707773 EcDH1_4119 Escherichia coli DH1 hypothetical protein YP_006094008.1 4460713 D 536056 CDS YP_006094009.1 386597609 12707774 complement(4461052..4462425) 1 NC_017625.1 KEGG: sbc:SbBS512_E4342 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 4462425 12707774 EcDH1_4120 Escherichia coli DH1 oxygen-independent coproporphyrinogen III oxidase YP_006094009.1 4461052 R 536056 CDS YP_006094010.1 386597610 12707775 complement(4462614..4463123) 1 NC_017625.1 PFAM: protein of unknown function DUF414; KEGG: sbc:SbBS512_E4340 hypothetical protein; hypothetical protein 4463123 12707775 EcDH1_4121 Escherichia coli DH1 hypothetical protein YP_006094010.1 4462614 R 536056 CDS YP_006094011.1 386597611 12707776 4463705..4464337 1 NC_017625.1 PFAM: GTP-binding protein HSR1-related; KEGG: sdy:SDY_3878 GTPase EngB; GTP-binding protein HSR1-like protein 4464337 12707776 EcDH1_4122 Escherichia coli DH1 GTP-binding protein HSR1-like protein YP_006094011.1 4463705 D 536056 CDS YP_006094012.1 386597612 12707777 complement(4464718..4467504) 1 NC_017625.1 KEGG: sbc:SbBS512_E4337 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 4467504 12707777 EcDH1_4123 Escherichia coli DH1 DNA polymerase I YP_006094012.1 4464718 R 536056 CDS YP_006094013.1 386597613 12707778 4467868..4468800 1 NC_017625.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ssn:SSON_4035 putative endonuclease; phospholipid/glycerol acyltransferase 4468800 12707778 EcDH1_4124 Escherichia coli DH1 phospholipid/glycerol acyltransferase YP_006094013.1 4467868 D 536056 CDS YP_006094014.1 386597614 12707779 complement(4468841..4470271) 1 NC_017625.1 PFAM: protein of unknown function DUF945; KEGG: sfx:S3815 hypothetical protein; hypothetical protein 4470271 12707779 EcDH1_4125 Escherichia coli DH1 hypothetical protein YP_006094014.1 4468841 R 536056 CDS YP_006094015.1 386597615 12707780 complement(4470426..4471052) 1 NC_017625.1 PFAM: DSBA oxidoreductase; KEGG: sbc:SbBS512_E4332 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase 4471052 12707780 EcDH1_4126 Escherichia coli DH1 DSBA oxidoreductase YP_006094015.1 4470426 R 536056 CDS YP_006094016.1 386597616 12707781 complement(4471069..4472055) 1 NC_017625.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function DUF227; KEGG: sdy:SDY_3886 predicted kinase; aminoglycoside phosphotransferase 4472055 12707781 EcDH1_4127 Escherichia coli DH1 aminoglycoside phosphotransferase YP_006094016.1 4471069 R 536056 CDS YP_006094017.1 386597617 12707782 complement(4472132..4472401) 1 NC_017625.1 PFAM: protein of unknown function DUF1040; KEGG: sdy:SDY_3887 hypothetical protein; hypothetical protein 4472401 12707782 EcDH1_4128 Escherichia coli DH1 hypothetical protein YP_006094017.1 4472132 R 536056 CDS YP_006094018.1 386597618 12707783 4472471..4473055 1 NC_017625.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: sbc:SbBS512_E4329 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4473055 12707783 EcDH1_4129 Escherichia coli DH1 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_006094018.1 4472471 D 536056 CDS YP_006094019.1 386597619 12707784 4473037..4473564 1 NC_017625.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: sbc:SbBS512_E4328 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein MobB 4473564 12707784 EcDH1_4130 Escherichia coli DH1 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_006094019.1 4473037 D 536056 CDS YP_006094020.1 386597620 12707790 complement(4479317..4479862) 1 NC_017625.1 KEGG: sdy:SDY_3895 protoporphyrinogen oxidase; Protoporphyrinogen oxidase 4479862 12707790 EcDH1_4131 Escherichia coli DH1 Protoporphyrinogen oxidase YP_006094020.1 4479317 R 536056 CDS YP_006094021.1 386597621 12707791 complement(4479874..4481325) 1 NC_017625.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: sdy:SDY_3896 potassium transporter; TrkH family potassium uptake protein 4481325 12707791 EcDH1_4132 Escherichia coli DH1 TrkH family potassium uptake protein YP_006094021.1 4479874 R 536056 CDS YP_006094022.1 386597622 12707792 complement(4481364..4481978) 1 NC_017625.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: ssn:SSON_4021 hypothetical protein; hypothetical protein 4481978 12707792 EcDH1_4133 Escherichia coli DH1 hypothetical protein YP_006094022.1 4481364 R 536056 CDS YP_006094023.1 386597623 12707793 complement(4481978..4483309) 1 NC_017625.1 PFAM: peptidase M24; KEGG: ssn:SSON_4020 proline dipeptidase; peptidase M24 4483309 12707793 EcDH1_4134 Escherichia coli DH1 peptidase M24 YP_006094023.1 4481978 R 536056 CDS YP_006094024.1 386597624 12707794 4483499..4485688 1 NC_017625.1 TIGRFAM: fatty oxidation complex, alpha subunit FadB; PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ssn:SSON_4019 multifunctional fatty acid oxidation complex subunit alpha; fatty acid oxidation complex subunit FadB 4485688 12707794 EcDH1_4135 Escherichia coli DH1 fatty acid oxidation complex subunit FadB YP_006094024.1 4483499 D 536056 CDS YP_006094025.1 386597625 12707795 4485698..4486861 1 NC_017625.1 KEGG: sbc:SbBS512_E4315 acetyl-CoA C-acyltransferase FadA; TIGRFAM: acetyl-CoA acetyltransferase; acetyl-CoA C-acyltransferase FadA; PFAM: Thiolase; acetyl-CoA C-acyltransferase FadA 4486861 12707795 EcDH1_4136 Escherichia coli DH1 acetyl-CoA C-acyltransferase FadA YP_006094025.1 4485698 D 536056 CDS YP_006094026.1 386597626 12707796 complement(4487242..4487943) 1 NC_017625.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ssn:SSON_4017 FMN reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4487943 12707796 EcDH1_4137 Escherichia coli DH1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_006094026.1 4487242 R 536056 CDS YP_006094027.1 386597627 12707797 complement(4487989..4489482) 1 NC_017625.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: ssn:SSON_4016 3-octaprenyl-4-hydroxybenzoate decarboxylase; UbiD family decarboxylase 4489482 12707797 EcDH1_4138 Escherichia coli DH1 UbiD family decarboxylase YP_006094027.1 4487989 R 536056 CDS YP_006094028.1 386597628 12707798 4489649..4490137 1 NC_017625.1 TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; KEGG: sdy:SDY_3903 transcriptional activator RfaH; transcriptional acivator RfaH 4490137 12707798 EcDH1_4139 Escherichia coli DH1 transcriptional acivator RfaH YP_006094028.1 4489649 D 536056 CDS YP_006094029.1 386597629 12707799 complement(4490134..4490916) 1 NC_017625.1 PFAM: TatD-related deoxyribonuclease; KEGG: sfv:SFV_3659 DNase TatD; TatD-related deoxyribonuclease 4490916 12707799 EcDH1_4140 Escherichia coli DH1 TatD-related deoxyribonuclease YP_006094029.1 4490134 R 536056 CDS YP_006094030.1 386597630 12707800 complement(4490958..4491734) 1 NC_017625.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sbc:SbBS512_E4310 twin arginine-targeting protein translocase TatC; Sec-independent protein translocase subunit TatC 4491734 12707800 EcDH1_4141 Escherichia coli DH1 Sec-independent protein translocase subunit TatC YP_006094030.1 4490958 R 536056 CDS YP_006094031.1 386597631 12707801 complement(4491737..4492252) 1 NC_017625.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ssn:SSON_4012 sec-independent translocase; twin-arginine translocation protein subunit TatB 4492252 12707801 EcDH1_4142 Escherichia coli DH1 twin-arginine translocation protein subunit TatB YP_006094031.1 4491737 R 536056 CDS YP_006094032.1 386597632 12707802 complement(4492256..4492525) 1 NC_017625.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: sdy:SDY_3907 twin argininte translocase protein A; twin-arginine translocation protein, TatA/E family subunit 4492525 12707802 EcDH1_4143 Escherichia coli DH1 twin-arginine translocation protein, TatA/E family subunit YP_006094032.1 4492256 R 536056 CDS YP_006094033.1 386597633 12707803 complement(4492604..4494244) 1 NC_017625.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: sdy:SDY_3908 putative ubiquinone biosynthesis protein UbiB; 2-polyprenylphenol 6-hydroxylase 4494244 12707803 EcDH1_4144 Escherichia coli DH1 2-polyprenylphenol 6-hydroxylase YP_006094033.1 4492604 R 536056 CDS YP_006094034.1 386597634 12707804 complement(4494241..4494846) 1 NC_017625.1 PFAM: Sterol-binding domain protein; KEGG: sbc:SbBS512_E4306 hypothetical protein; Sterol-binding domain-containing protein 4494846 12707804 EcDH1_4145 Escherichia coli DH1 Sterol-binding domain-containing protein YP_006094034.1 4494241 R 536056 CDS YP_006094035.1 386597635 12707805 complement(4494860..4495615) 1 NC_017625.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_3910 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 4495615 12707805 EcDH1_4146 Escherichia coli DH1 ubiquinone/menaquinone biosynthesis methyltransferase YP_006094035.1 4494860 R 536056 CDS YP_006094036.1 386597636 12707806 complement(4495710..4497137) 1 NC_017625.1 PFAM: protein of unknown function DUF195; KEGG: sbo:SBO_3846 DNA recombination protein RmuC; hypothetical protein 4497137 12707806 EcDH1_4147 Escherichia coli DH1 hypothetical protein YP_006094036.1 4495710 R 536056 CDS YP_006094037.1 386597637 12707807 complement(4497278..4498039) 1 NC_017625.1 TIGRFAM: uridine phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: sfv:SFV_3667 uridine phosphorylase; uridine phosphorylase 4498039 12707807 EcDH1_4148 Escherichia coli DH1 uridine phosphorylase YP_006094037.1 4497278 R 536056 CDS YP_006094038.1 386597638 12707808 4498301..4499116 1 NC_017625.1 PFAM: dienelactone hydrolase; KEGG: sfl:SF3908 putative enzyme; Carboxymethylenebutenolidase 4499116 12707808 EcDH1_4149 Escherichia coli DH1 Carboxymethylenebutenolidase YP_006094038.1 4498301 D 536056 CDS YP_006094039.1 386597639 12707809 complement(4499156..4501417) 1 NC_017625.1 KEGG: sdy:SDY_3914 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4501417 12707809 EcDH1_4150 Escherichia coli DH1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_006094039.1 4499156 R 536056 CDS YP_006094040.1 386597640 12707810 4501654..4502607 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_3840 MetR; LysR family transcriptional regulator 4502607 12707810 EcDH1_4151 Escherichia coli DH1 LysR family transcriptional regulator YP_006094040.1 4501654 D 536056 CDS YP_006094041.1 386597641 12707811 complement(4502495..4503394) 1 NC_017625.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: ssn:SSON_4001 hypothetical protein; carboxylate/amino acid/amine transporter 4503394 12707811 EcDH1_4152 Escherichia coli DH1 carboxylate/amino acid/amine transporter YP_006094041.1 4502495 R 536056 CDS YP_006094042.1 386597642 12707812 complement(4503470..4504270) 1 NC_017625.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: sbc:SbBS512_E4293 hydrolase, Cof family; cof family hydrolase 4504270 12707812 EcDH1_4153 Escherichia coli DH1 cof family hydrolase YP_006094042.1 4503470 R 536056 CDS YP_006094043.1 386597643 12707813 complement(4504278..4505300) 1 NC_017625.1 PFAM: alpha/beta hydrolase fold; KEGG: sbc:SbBS512_E4292 lysophospholipase L2; lysophospholipase 4505300 12707813 EcDH1_4154 Escherichia coli DH1 lysophospholipase YP_006094043.1 4504278 R 536056 CDS YP_006094044.1 386597644 12707814 4505411..4506031 1 NC_017625.1 TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sbc:SbBS512_E4291 homoserine/homoserine lactone efflux protein; homoserine/threonine efflux pump 4506031 12707814 EcDH1_4155 Escherichia coli DH1 homoserine/threonine efflux pump YP_006094044.1 4505411 D 536056 CDS YP_006094045.1 386597645 12707815 complement(4506093..4506713) 1 NC_017625.1 TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sbc:SbBS512_E4290 threonine efflux protein; homoserine/threonine efflux pump 4506713 12707815 EcDH1_4156 Escherichia coli DH1 homoserine/threonine efflux pump YP_006094045.1 4506093 R 536056 CDS YP_006094046.1 386597646 12707816 complement(4506777..4508612) 1 NC_017625.1 KEGG: sfx:S3855 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; RecQ familyATP-dependent DNA helicase 4508612 12707816 EcDH1_4157 Escherichia coli DH1 RecQ familyATP-dependent DNA helicase YP_006094046.1 4506777 R 536056 CDS YP_006094047.1 386597647 12707817 complement(4508739..4509608) 1 NC_017625.1 PFAM: phospholipase A1; KEGG: sdy:SDY_3922 phospholipase A; Phospholipase A(1) 4509608 12707817 EcDH1_4158 Escherichia coli DH1 Phospholipase A(1) YP_006094047.1 4508739 R 536056 CDS YP_006094048.1 386597648 12707818 4509773..4510240 1 NC_017625.1 PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E4287 thioesterase family protein; thioesterase superfamily protein 4510240 12707818 EcDH1_4159 Escherichia coli DH1 thioesterase superfamily protein YP_006094048.1 4509773 D 536056 CDS YP_006094049.1 386597649 12707819 4510292..4511182 1 NC_017625.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfv:SFV_3679 hypothetical protein; RarD protein, DMT superfamily transporter 4511182 12707819 EcDH1_4160 Escherichia coli DH1 RarD protein, DMT superfamily transporter YP_006094049.1 4510292 D 536056 CDS YP_006094050.1 386597650 12707820 4511277..4511657 1 NC_017625.1 KEGG: sfx:S3859 hypothetical protein; hypothetical protein 4511657 12707820 EcDH1_4161 Escherichia coli DH1 hypothetical protein YP_006094050.1 4511277 D 536056 CDS YP_006094051.1 386597651 12707821 4511671..4512051 1 NC_017625.1 KEGG: sfv:SFV_3681 hypothetical protein; hypothetical protein 4512051 12707821 EcDH1_4162 Escherichia coli DH1 hypothetical protein YP_006094051.1 4511671 D 536056 CDS YP_006094052.1 386597652 12707822 complement(4512094..4513044) 1 NC_017625.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: sdy:SDY_3929 magnesium/nickel/cobalt transporter CorA; magnesium and cobalt transport protein CorA 4513044 12707822 EcDH1_4163 Escherichia coli DH1 magnesium and cobalt transport protein CorA YP_006094052.1 4512094 R 536056 CDS YP_006094053.1 386597653 12707823 complement(4513288..4513401) 1 NC_017625.1 KEGG: sbc:SbBS512_E4280 hypothetical protein; hypothetical protein 4513401 12707823 EcDH1_4164 Escherichia coli DH1 hypothetical protein YP_006094053.1 4513288 R 536056 CDS YP_006094054.1 386597654 12707824 4513414..4514178 1 NC_017625.1 KEGG: sdy:SDY_3930 predicted periplasmic protein; hypothetical protein 4514178 12707824 EcDH1_4165 Escherichia coli DH1 hypothetical protein YP_006094054.1 4513414 D 536056 CDS YP_006094055.1 386597655 12707825 complement(4514325..4516487) 1 NC_017625.1 TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase; KEGG: ssn:SSON_3986 DNA-dependent helicase II; DNA helicase II 4516487 12707825 EcDH1_4166 Escherichia coli DH1 DNA helicase II YP_006094055.1 4514325 R 536056 CDS YP_006094056.1 386597656 12707826 complement(4516571..4517287) 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sbc:SbBS512_E4272 HAD-superfamily hydrolase; HAD-superfamily hydrolase 4517287 12707826 EcDH1_4167 Escherichia coli DH1 HAD-superfamily hydrolase YP_006094056.1 4516571 R 536056 CDS YP_006094057.1 386597657 12707827 complement(4517287..4518183) 1 NC_017625.1 TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbc:SbBS512_E4271 tyrosine recombinase XerC; tyrosine recombinase XerC 4518183 12707827 EcDH1_4168 Escherichia coli DH1 tyrosine recombinase XerC YP_006094057.1 4517287 R 536056 CDS YP_006094058.1 386597658 12707828 complement(4518180..4518887) 1 NC_017625.1 PFAM: protein of unknown function DUF484; KEGG: sbc:SbBS512_E4270 hypothetical protein; hypothetical protein 4518887 12707828 EcDH1_4169 Escherichia coli DH1 hypothetical protein YP_006094058.1 4518180 R 536056 CDS YP_006094059.1 386597659 12707829 complement(4518884..4519708) 1 NC_017625.1 PFAM: diaminopimelate epimerase; KEGG: sdy:SDY_3936 diaminopimelate epimerase; diaminopimelate epimerase 4519708 12707829 EcDH1_4170 Escherichia coli DH1 diaminopimelate epimerase YP_006094059.1 4518884 R 536056 CDS YP_006094060.1 386597660 12707830 complement(4519745..4519948) 1 NC_017625.1 KEGG: ssn:SSON_3981 hypothetical protein; hypothetical protein 4519948 12707830 EcDH1_4171 Escherichia coli DH1 hypothetical protein YP_006094060.1 4519745 R 536056 CDS YP_006094061.1 386597661 12707831 4520411..4520731 1 NC_017625.1 TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: sdy:SDY_3938 frataxin-like protein; iron donor protein CyaY 4520731 12707831 EcDH1_4172 Escherichia coli DH1 iron donor protein CyaY YP_006094061.1 4520411 D 536056 CDS YP_006094062.1 386597662 12707832 complement(4520771..4523317) 1 NC_017625.1 PFAM: adenylate cyclase class-I; KEGG: sbc:SbBS512_E4265 adenylate cyclase, class I; putative adenylate cyclase 4523317 12707832 EcDH1_4173 Escherichia coli DH1 putative adenylate cyclase YP_006094062.1 4520771 R 536056 CDS YP_006094063.1 386597663 12707833 4523683..4524645 1 NC_017625.1 KEGG: sbo:SBO_3816 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 4524645 12707833 EcDH1_4174 Escherichia coli DH1 porphobilinogen deaminase YP_006094063.1 4523683 D 536056 CDS YP_006094064.1 386597664 12707834 4524642..4525382 1 NC_017625.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: sbo:SBO_3815 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 4525382 12707834 EcDH1_4175 Escherichia coli DH1 uroporphyrinogen-III synthase YP_006094064.1 4524642 D 536056 CDS YP_006094065.1 386597665 12707835 4525404..4526585 1 NC_017625.1 PFAM: protein of unknown function DUF513 hemX; KEGG: sdy:SDY_3943 putative uroporphyrinogen III C-methyltransferase; hypothetical protein 4526585 12707835 EcDH1_4176 Escherichia coli DH1 hypothetical protein YP_006094065.1 4525404 D 536056 CDS YP_006094066.1 386597666 12707836 4526588..4527784 1 NC_017625.1 TIGRFAM: HemY protein; PFAM: HemY domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: sbc:SbBS512_E4261 HemY protein; HemY protein 4527784 12707836 EcDH1_4177 Escherichia coli DH1 HemY protein YP_006094066.1 4526588 D 536056 CDS YP_006094067.1 386597667 12707837 4528463..4530118 1 NC_017625.1 PFAM: sulfatase; KEGG: sdy:SDY_3945 arylsulfatase; sulfatase 4530118 12707837 EcDH1_4178 Escherichia coli DH1 sulfatase YP_006094067.1 4528463 D 536056 CDS YP_006094068.1 386597668 12707838 complement(4530277..4531512) 1 NC_017625.1 PFAM: Radical SAM domain protein; KEGG: ssn:SSON_3973 putative arylsulfatase regulator; radical SAM protein 4531512 12707838 EcDH1_4179 Escherichia coli DH1 radical SAM protein YP_006094068.1 4530277 R 536056 CDS YP_006094069.1 386597669 12707843 complement(4532198..4533583) 1 NC_017625.1 PFAM: amino acid permease-associated region; KEGG: sdy:SDY_3952 putative transport protein YifK; amino acid permease 4533583 12707843 EcDH1_4180 Escherichia coli DH1 amino acid permease YP_006094069.1 4532198 R 536056 CDS YP_006094070.1 386597670 12707844 complement(4533774..4534514) 1 NC_017625.1 KEGG: sdy:SDY_3953 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 4534514 12707844 EcDH1_4181 Escherichia coli DH1 WecB/TagA/CpsF family glycosyl transferase YP_006094070.1 4533774 R 536056 CDS YP_006094071.1 386597671 12707845 complement(4534517..4535869) 1 NC_017625.1 PFAM: WzyE family protein; KEGG: ssn:SSON_3966 putative enterobacterial common antigen polymerase; WzyE family protein 4535869 12707845 EcDH1_4182 Escherichia coli DH1 WzyE family protein YP_006094071.1 4534517 R 536056 CDS YP_006094072.1 386597672 12707846 complement(4535866..4536945) 1 NC_017625.1 PFAM: 4-alpha-L-fucosyltransferase; KEGG: sbc:SbBS512_E4128 TDP-Fuc4NAc:lipid II Fuc4Nac transferase; 4-alpha-L-fucosyltransferase 4536945 12707846 EcDH1_4183 Escherichia coli DH1 4-alpha-L-fucosyltransferase YP_006094072.1 4535866 R 536056 CDS YP_006094073.1 386597673 12707847 complement(4536942..4538192) 1 NC_017625.1 PFAM: polysaccharide biosynthesis protein; KEGG: sbc:SbBS512_E4129 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 4538192 12707847 EcDH1_4184 Escherichia coli DH1 polysaccharide biosynthesis protein YP_006094073.1 4536942 R 536056 CDS YP_006094074.1 386597674 12707849 complement(4538194..4539324) 1 NC_017625.1 TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sbo:SBO_3802 TDP-4-oxo-6-deoxy-D-glucose transaminase; TDP-4-keto-6-deoxy-D-glucose transaminase 4539324 12707849 EcDH1_4185 Escherichia coli DH1 TDP-4-keto-6-deoxy-D-glucose transaminase YP_006094074.1 4538194 R 536056 CDS YP_006094075.1 386597675 12707851 complement(4539329..4540003) 1 NC_017625.1 TIGRFAM: TDP-D-fucosamine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: sfv:SFV_3714 TDP-fucosamine acetyltransferase; TDP-D-fucosamine acetyltransferase 4540003 12707851 EcDH1_4186 Escherichia coli DH1 TDP-D-fucosamine acetyltransferase YP_006094075.1 4539329 R 536056 CDS YP_006094076.1 386597676 12707853 complement(4539981..4540862) 1 NC_017625.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sbc:SbBS512_E4132 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 4540862 12707853 EcDH1_4187 Escherichia coli DH1 glucose-1-phosphate thymidylyltransferase YP_006094076.1 4539981 R 536056 CDS YP_006094077.1 386597677 12707855 complement(4540881..4541948) 1 NC_017625.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ssn:SSON_3960 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4541948 12707855 EcDH1_4188 Escherichia coli DH1 dTDP-glucose 4,6-dehydratase YP_006094077.1 4540881 R 536056 CDS YP_006094078.1 386597678 12707856 complement(4541948..4543210) 1 NC_017625.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: sfv:SFV_3717 UDP-N-acetyl-D-mannosamine dehydrogenase; nucleotide sugar dehydrogenase 4543210 12707856 EcDH1_4189 Escherichia coli DH1 nucleotide sugar dehydrogenase YP_006094078.1 4541948 R 536056 CDS YP_006094079.1 386597679 12707857 complement(4543207..4544337) 1 NC_017625.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: sdy:SDY_3962 UDP-N-acetyl glucosamine -2-epimerase; UDP-N-acetylglucosamine 2-epimerase 4544337 12707857 EcDH1_4190 Escherichia coli DH1 UDP-N-acetylglucosamine 2-epimerase YP_006094079.1 4543207 R 536056 CDS YP_006094080.1 386597680 12707858 complement(4544393..4545439) 1 NC_017625.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: sdy:SDY_3963 lipopolysaccharide biosynthesis protein WzzE; lipopolysaccharide biosynthesis protein 4545439 12707858 EcDH1_4191 Escherichia coli DH1 lipopolysaccharide biosynthesis protein YP_006094080.1 4544393 R 536056 CDS YP_006094081.1 386597681 12707859 complement(4545451..4546554) 1 NC_017625.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase family 4; KEGG: sbc:SbBS512_E4137 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4546554 12707859 EcDH1_4192 Escherichia coli DH1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_006094081.1 4545451 R 536056 CDS YP_006094082.1 386597682 12707860 complement(4546566..4546784) 1 NC_017625.1 KEGG: sbo:SBO_3794 hypothetical protein; hypothetical protein 4546784 12707860 EcDH1_4193 Escherichia coli DH1 hypothetical protein YP_006094082.1 4546566 R 536056 CDS YP_006094083.1 386597683 12707861 complement(4546794..4548053) 1 NC_017625.1 KEGG: sdy:SDY_3966 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; Ribonuclease B OB region domain; SMART: AAA ATPase; Cold shock protein; transcription termination factor Rho 4548053 12707861 EcDH1_4194 Escherichia coli DH1 transcription termination factor Rho YP_006094083.1 4546794 R 536056 CDS YP_006094084.1 386597684 12707862 complement(4548138..4548239) 1 NC_017625.1 KEGG: sdy:SDY_3967 putative rho operon leader peptide; putative rho operon leader peptide 4548239 12707862 EcDH1_4195 Escherichia coli DH1 putative rho operon leader peptide YP_006094084.1 4548138 R 536056 CDS YP_006094085.1 386597685 12707863 complement(4548380..4548709) 1 NC_017625.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cko:CKO_00123 hypothetical protein; thioredoxin 4548709 12707863 EcDH1_4196 Escherichia coli DH1 thioredoxin YP_006094085.1 4548380 R 536056 CDS YP_006094086.1 386597686 12707864 4548840..4550105 1 NC_017625.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ssn:SSON_3951 ATP-dependent RNA helicase RhlB; DEAD/DEAH box helicase 4550105 12707864 EcDH1_4197 Escherichia coli DH1 DEAD/DEAH box helicase YP_006094086.1 4548840 D 536056 CDS YP_006094087.1 386597687 12707865 4550241..4551725 1 NC_017625.1 PFAM: Ppx/GppA phosphatase; KEGG: sbc:SbBS512_E4142 guanosine-5'-triphosphate,3'-diphosphate diphosphatase; Ppx/GppA phosphatase 4551725 12707865 EcDH1_4198 Escherichia coli DH1 Ppx/GppA phosphatase YP_006094087.1 4550241 D 536056 CDS YP_006094088.1 386597688 12707866 complement(4551772..4553793) 1 NC_017625.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: ssn:SSON_3949 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 4553793 12707866 EcDH1_4199 Escherichia coli DH1 ATP-dependent DNA helicase Rep YP_006094088.1 4551772 R 536056 CDS YP_006094089.1 386597689 12707867 4554010..4554228 1 NC_017625.1 KEGG: spe:Spro_1358 hypothetical protein; hypothetical protein 4554228 12707867 EcDH1_4200 Escherichia coli DH1 hypothetical protein YP_006094089.1 4554010 D 536056 CDS YP_006094090.1 386597690 12707868 4554657..4554938 1 NC_017625.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cko:CKO_00116 hypothetical protein; PpiC-type peptidyl-prolyl cis-trans isomerase 4554938 12707868 EcDH1_4201 Escherichia coli DH1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_006094090.1 4554657 D 536056 CDS YP_006094091.1 386597691 12707869 complement(4555025..4556500) 1 NC_017625.1 KEGG: sfv:SFV_3729 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain protein; ketol-acid reductoisomerase 4556500 12707869 EcDH1_4202 Escherichia coli DH1 ketol-acid reductoisomerase YP_006094091.1 4555025 R 536056 CDS YP_006094092.1 386597692 12707870 4556650..4557543 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3975 DNA-binding transcriptional regulator IlvY; LysR family transcriptional regulator 4557543 12707870 EcDH1_4203 Escherichia coli DH1 LysR family transcriptional regulator YP_006094092.1 4556650 D 536056 CDS YP_006094093.1 386597693 12707871 complement(4557595..4559139) 1 NC_017625.1 TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ssn:SSON_3943 threonine dehydratase; threonine dehydratase, biosynthetic 4559139 12707871 EcDH1_4204 Escherichia coli DH1 threonine dehydratase, biosynthetic YP_006094093.1 4557595 R 536056 CDS YP_006094094.1 386597694 12707872 complement(4559142..4560992) 1 NC_017625.1 KEGG: sbc:SbBS512_E4149 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 4560992 12707872 EcDH1_4205 Escherichia coli DH1 dihydroxy-acid dehydratase YP_006094094.1 4559142 R 536056 CDS YP_006094095.1 386597695 12707873 complement(4561057..4561986) 1 NC_017625.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: sdy:SDY_3978 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase 4561986 12707873 EcDH1_4206 Escherichia coli DH1 branched-chain amino acid aminotransferase YP_006094095.1 4561057 R 536056 CDS YP_006094096.1 386597696 12707874 complement(4562006..4562269) 1 NC_017625.1 KEGG: sdy:SDY_3979 acetolactate synthase 2 regulatory subunit; acetolactate synthase 2 regulatory subunit 4562269 12707874 EcDH1_4207 Escherichia coli DH1 acetolactate synthase 2 regulatory subunit YP_006094096.1 4562006 R 536056 CDS YP_006094097.1 386597697 12707876 4564501..4566021 1 NC_017625.1 KEGG: sfv:SFV_3735 putative ATP-dependent protease; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4566021 12707876 EcDH1_4209 Escherichia coli DH1 Mg chelatase subunit ChlI YP_006094097.1 4564501 D 536056 CDS YP_006094098.1 386597698 12707877 complement(4566046..4566384) 1 NC_017625.1 PFAM: protein of unknown function DUF413; KEGG: sdy:SDY_3984 hypothetical protein; hypothetical protein 4566384 12707877 EcDH1_4210 Escherichia coli DH1 hypothetical protein YP_006094098.1 4566046 R 536056 CDS YP_006094099.1 386597699 12707878 4566503..4567342 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_3775 transcriptional regulator HdfR; LysR family transcriptional regulator 4567342 12707878 EcDH1_4211 Escherichia coli DH1 LysR family transcriptional regulator YP_006094099.1 4566503 D 536056 CDS YP_006094100.1 386597700 12707885 4573143..4573835 1 NC_017625.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sfv:SFV_3744 hypothetical protein; GntR family transcriptional regulator 4573835 12707885 EcDH1_4212 Escherichia coli DH1 GntR family transcriptional regulator YP_006094100.1 4573143 D 536056 CDS YP_006094101.1 386597701 12707886 4573858..4575285 1 NC_017625.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_3993 putative transport protein; EmrB/QacA subfamily drug resistance transporter 4575285 12707886 EcDH1_4213 Escherichia coli DH1 EmrB/QacA subfamily drug resistance transporter YP_006094101.1 4573858 D 536056 CDS YP_006094102.1 386597702 12707889 complement(4576246..4577175) 1 NC_017625.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: sbo:SBO_3766 ribokinase; ribokinase 4577175 12707889 EcDH1_4215 Escherichia coli DH1 ribokinase YP_006094102.1 4576246 R 536056 CDS YP_006094103.1 386597703 12707891 complement(4577301..4578191) 1 NC_017625.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cko:CKO_00091 D-ribose transporter subunit RbsB; monosaccharide-transporting ATPase 4578191 12707891 EcDH1_4216 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006094103.1 4577301 R 536056 CDS YP_006094104.1 386597704 12707893 complement(4578216..4579181) 1 NC_017625.1 PFAM: inner-membrane translocator; KEGG: ssn:SSON_3920 ribose ABC transporter permease protein; monosaccharide-transporting ATPase 4579181 12707893 EcDH1_4217 Escherichia coli DH1 monosaccharide-transporting ATPase YP_006094104.1 4578216 R 536056 CDS YP_006094105.1 386597705 12707895 complement(4579186..4580691) 1 NC_017625.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_3919 D-ribose transporter ATP binding protein; ABC transporter 4580691 12707895 EcDH1_4218 Escherichia coli DH1 ABC transporter YP_006094105.1 4579186 R 536056 CDS YP_006094106.1 386597706 12707897 complement(4580699..4581118) 1 NC_017625.1 PFAM: RbsD or FucU transport; KEGG: sbc:SbBS512_E4172 cytoplasmic D-ribose-binding protein RbsD; transport protein RbsD/FucU 4581118 12707897 EcDH1_4219 Escherichia coli DH1 transport protein RbsD/FucU YP_006094106.1 4580699 R 536056 CDS YP_006094107.1 386597707 12707898 complement(4581285..4583153) 1 NC_017625.1 TIGRFAM: potassium uptake protein; PFAM: K potassium transporter; KEGG: ssn:SSON_3917 potassium transport protein Kup; potassium uptake protein 4583153 12707898 EcDH1_4220 Escherichia coli DH1 potassium uptake protein YP_006094107.1 4581285 R 536056 CDS YP_006094108.1 386597708 12707899 4583376..4584872 1 NC_017625.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sbo:SBO_3741 putative 2-component regulator; ATPase 4584872 12707899 EcDH1_4221 Escherichia coli DH1 ATPase YP_006094108.1 4583376 D 536056 CDS YP_006094109.1 386597709 12707900 4584866..4586317 1 NC_017625.1 SMART: von Willebrand factor type A; KEGG: sbo:SBO_3742 hypothetical protein; von Willebrand factor type A 4586317 12707900 EcDH1_4222 Escherichia coli DH1 von Willebrand factor type A YP_006094109.1 4584866 D 536056 CDS YP_006094110.1 386597710 12707901 complement(4586322..4587314) 1 NC_017625.1 KEGG: sdy:SDY_4004 asparagine synthetase AsnA; TIGRFAM: aspartate/ammonia ligase; PFAM: aspartate--ammonia ligase; aspartate/ammonia ligase 4587314 12707901 EcDH1_4223 Escherichia coli DH1 aspartate/ammonia ligase YP_006094110.1 4586322 R 536056 CDS YP_006094111.1 386597711 12707902 4587466..4587924 1 NC_017625.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: sdy:SDY_4005 DNA-binding transcriptional regulator AsnC; AsnC family transcriptional regulator 4587924 12707902 EcDH1_4224 Escherichia coli DH1 AsnC family transcriptional regulator YP_006094111.1 4587466 D 536056 CDS YP_006094112.1 386597712 12707903 4588014..4588457 1 NC_017625.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: sbc:SbBS512_E4179 MioC protein; flavodoxin/nitric oxide synthase 4588457 12707903 EcDH1_4225 Escherichia coli DH1 flavodoxin/nitric oxide synthase YP_006094112.1 4588014 D 536056 CDS YP_006094113.1 386597713 12707904 4588836..4590725 1 NC_017625.1 TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: sbo:SBO_3746 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; glucose inhibited division protein A 4590725 12707904 EcDH1_4226 Escherichia coli DH1 glucose inhibited division protein A YP_006094113.1 4588836 D 536056 CDS YP_006094114.1 386597714 12707905 4590789..4591412 1 NC_017625.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: sbc:SbBS512_E4181 methyltransferase GidB; methyltransferase GidB 4591412 12707905 EcDH1_4227 Escherichia coli DH1 methyltransferase GidB YP_006094114.1 4590789 D 536056 CDS YP_006094115.1 386597715 12707906 4592029..4592409 1 NC_017625.1 PFAM: ATP synthase I chain; KEGG: sdy:SDY_4009 F0F1 ATP synthase subunit I; ATP synthase I chain 4592409 12707906 EcDH1_4228 Escherichia coli DH1 ATP synthase I chain YP_006094115.1 4592029 D 536056 CDS YP_006094116.1 386597716 12707907 4592418..4593233 1 NC_017625.1 KEGG: sbc:SbBS512_E4183 ATP synthase F0, A subunit; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; ATP synthase F0 subunit A 4593233 12707907 EcDH1_4229 Escherichia coli DH1 ATP synthase F0 subunit A YP_006094116.1 4592418 D 536056 CDS YP_006094117.1 386597717 12707908 4593280..4593519 1 NC_017625.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: kpn:KPN_04142 ATP synthase subunit C; ATP synthase F0 subunit C 4593519 12707908 EcDH1_4230 Escherichia coli DH1 ATP synthase F0 subunit C YP_006094117.1 4593280 D 536056 CDS YP_006094118.1 386597718 12707909 4593581..4594051 1 NC_017625.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sdy:SDY_4012 F0F1 ATP synthase subunit B; ATP synthase F0 subunit B 4594051 12707909 EcDH1_4231 Escherichia coli DH1 ATP synthase F0 subunit B YP_006094118.1 4593581 D 536056 CDS YP_006094119.1 386597719 12707910 4594066..4594599 1 NC_017625.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: sbc:SbBS512_E4186 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta 4594599 12707910 EcDH1_4232 Escherichia coli DH1 ATP synthase F1 subunit delta YP_006094119.1 4594066 D 536056 CDS YP_006094120.1 386597720 12707911 4594612..4596153 1 NC_017625.1 KEGG: sdy:SDY_4014 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 alpha subunit; ATP synthase F1 subunit alpha 4596153 12707911 EcDH1_4233 Escherichia coli DH1 ATP synthase F1 subunit alpha YP_006094120.1 4594612 D 536056 CDS YP_006094121.1 386597721 12707912 4596204..4597067 1 NC_017625.1 KEGG: sdy:SDY_4015 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 4597067 12707912 EcDH1_4234 Escherichia coli DH1 ATP synthase F1 subunit gamma YP_006094121.1 4596204 D 536056 CDS YP_006094122.1 386597722 12707913 4597094..4598476 1 NC_017625.1 KEGG: sbc:SbBS512_E4189 ATP synthase F1, beta subunit; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta 4598476 12707913 EcDH1_4235 Escherichia coli DH1 ATP synthase F1 subunit beta YP_006094122.1 4597094 D 536056 CDS YP_006094123.1 386597723 12707914 4598497..4598916 1 NC_017625.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: sdy:SDY_4017 F0F1 ATP synthase subunit epsilon; ATP synthase F1 subunit epsilon 4598916 12707914 EcDH1_4236 Escherichia coli DH1 ATP synthase F1 subunit epsilon YP_006094123.1 4598497 D 536056 CDS YP_006094124.1 386597724 12707915 4599269..4600639 1 NC_017625.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: sdy:SDY_4018 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; UDP-N-acetylglucosamine pyrophosphorylase 4600639 12707915 EcDH1_4237 Escherichia coli DH1 UDP-N-acetylglucosamine pyrophosphorylase YP_006094124.1 4599269 D 536056 CDS YP_006094125.1 386597725 12707916 4600801..4602630 1 NC_017625.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: sfv:SFV_3755 D-fructose-6-phosphate amidotransferase; glucosamine/fructose-6-phosphate aminotransferase 4602630 12707916 EcDH1_4238 Escherichia coli DH1 glucosamine/fructose-6-phosphate aminotransferase YP_006094125.1 4600801 D 536056 CDS YP_006094126.1 386597726 12707917 4602944..4603984 1 NC_017625.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sbc:SbBS512_E4200 phosphate ABC transporter, periplasmic phosphate-binding protein PstS; phosphate ABC transporter substrate-binding protein 4603984 12707917 EcDH1_4239 Escherichia coli DH1 phosphate ABC transporter substrate-binding protein YP_006094126.1 4602944 D 536056 CDS YP_006094127.1 386597727 12707918 4604071..4605030 1 NC_017625.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E4201 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 4605030 12707918 EcDH1_4240 Escherichia coli DH1 phosphate ABC transporter permease YP_006094127.1 4604071 D 536056 CDS YP_006094128.1 386597728 12707919 4605030..4605920 1 NC_017625.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S4043 phosphate transporter permease subunit; phosphate ABC transporter permease 4605920 12707919 EcDH1_4241 Escherichia coli DH1 phosphate ABC transporter permease YP_006094128.1 4605030 D 536056 CDS YP_006094129.1 386597729 12707920 4606103..4606876 1 NC_017625.1 KEGG: sdy:SDY_4025 phosphate transporter subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 4606876 12707920 EcDH1_4242 Escherichia coli DH1 phosphate ABC transporter ATPase YP_006094129.1 4606103 D 536056 CDS YP_006094130.1 386597730 12707921 4606891..4607616 1 NC_017625.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sbc:SbBS512_E4204 phosphate transport system regulatory protein PhoU; phosphate uptake regulator PhoU 4607616 12707921 EcDH1_4243 Escherichia coli DH1 phosphate uptake regulator PhoU YP_006094130.1 4606891 D 536056 CDS YP_006094131.1 386597731 12707922 4607902..4608738 1 NC_017625.1 PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: sfv:SFV_3784 transcriptional antiterminator BglG; transcriptional antiterminator BglG 4608738 12707922 EcDH1_4244 Escherichia coli DH1 transcriptional antiterminator BglG YP_006094131.1 4607902 D 536056 CDS YP_006094132.1 386597732 12707923 4608872..4610749 1 NC_017625.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: ssn:SSON_3912 beta-glucoside-specific PTS system components IIABC; PTS system beta-glucoside-specific transporter subunit IIABC 4610749 12707923 EcDH1_4245 Escherichia coli DH1 PTS system beta-glucoside-specific transporter subunit IIABC YP_006094132.1 4608872 D 536056 CDS YP_006094133.1 386597733 12707924 4610768..4612180 1 NC_017625.1 PFAM: glycoside hydrolase family 1; KEGG: sfv:SFV_3786 phospho-beta-glucosidase B; cryptic; glycoside hydrolase 4612180 12707924 EcDH1_4246 Escherichia coli DH1 glycoside hydrolase YP_006094133.1 4610768 D 536056 CDS YP_006094134.1 386597734 12707925 4612249..4613865 1 NC_017625.1 PFAM: porin LamB type; KEGG: ssn:SSON_3915 putative receptor protein; LamB type porin 4613865 12707925 EcDH1_4247 Escherichia coli DH1 LamB type porin YP_006094134.1 4612249 D 536056 CDS YP_006094135.1 386597735 12707926 4613892..4615061 1 NC_017625.1 PFAM: putative esterase; glycoside hydrolase family 13 domain protein; KEGG: sfx:S4034 putative xylanase; glycoside hydrolase family protein 4615061 12707926 EcDH1_4248 Escherichia coli DH1 glycoside hydrolase family protein YP_006094135.1 4613892 D 536056 CDS YP_006094136.1 386597736 12707927 4615076..4615798 1 NC_017625.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sfv:SFV_3789 putative 6-phosphogluconolactonase; glucosamine/galactosamine-6-phosphate isomerase 4615798 12707927 EcDH1_4249 Escherichia coli DH1 glucosamine/galactosamine-6-phosphate isomerase YP_006094136.1 4615076 D 536056 CDS YP_006094137.1 386597737 12707928 complement(4615860..4616447) 1 NC_017625.1 PFAM: protein of unknown function UPF0167; KEGG: sfv:SFV_3790 hypothetical protein; hypothetical protein 4616447 12707928 EcDH1_4250 Escherichia coli DH1 hypothetical protein YP_006094137.1 4615860 R 536056 CDS YP_006094138.1 386597738 12707929 complement(4616496..4616963) 1 NC_017625.1 KEGG: ssn:SSON_3560 predicted inner membrane protein; inner membrane protein 4616963 12707929 EcDH1_4251 Escherichia coli DH1 inner membrane protein YP_006094138.1 4616496 R 536056 CDS YP_006094139.1 386597739 12707930 complement(4617030..4617695) 1 NC_017625.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_3559 predicted hydrolase; HAD-superfamily hydrolase 4617695 12707930 EcDH1_4252 Escherichia coli DH1 HAD-superfamily hydrolase YP_006094139.1 4617030 R 536056 CDS YP_006094140.1 386597740 12707931 4617860..4619197 1 NC_017625.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_3558 putative membrane/transport protein; xanthine/uracil/vitamin C permease 4619197 12707931 EcDH1_4253 Escherichia coli DH1 xanthine/uracil/vitamin C permease YP_006094140.1 4617860 D 536056 CDS YP_006094141.1 386597741 12707932 complement(4619251..4619817) 1 NC_017625.1 PFAM: NADPH-dependent FMN reductase; KEGG: sfv:SFV_3798 hypothetical protein; NADPH-dependent FMN reductase 4619817 12707932 EcDH1_4254 Escherichia coli DH1 NADPH-dependent FMN reductase YP_006094141.1 4619251 R 536056 CDS YP_006094142.1 386597742 12707933 complement(4619839..4620588) 1 NC_017625.1 KEGG: sdy:SDY_4201 hypothetical protein; hypothetical protein 4620588 12707933 EcDH1_4255 Escherichia coli DH1 hypothetical protein YP_006094142.1 4619839 R 536056 CDS YP_006094143.1 386597743 12707934 complement(4620745..4621704) 1 NC_017625.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E4211 transcriptional regulator, LysR family; LysR family transcriptional regulator 4621704 12707934 EcDH1_4256 Escherichia coli DH1 LysR family transcriptional regulator YP_006094143.1 4620745 R 536056 CDS YP_006094144.1 386597744 12707935 complement(4621679..4622854) 1 NC_017625.1 PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4212 multidrug resistance protein MdtL; major facilitator superfamily protein 4622854 12707935 EcDH1_4257 Escherichia coli DH1 major facilitator superfamily protein YP_006094144.1 4621679 R 536056 CDS YP_006094145.1 386597745 12707936 complement(4622986..4624233) 1 NC_017625.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: sbo:SBO_3666 tryptophan permease TnaB; aromatic amino acid transporter 4624233 12707936 EcDH1_4258 Escherichia coli DH1 aromatic amino acid transporter YP_006094145.1 4622986 R 536056 CDS YP_006094146.1 386597746 12707937 complement(4624324..4625739) 1 NC_017625.1 KEGG: sfv:SFV_3805 tryptophanase; TIGRFAM: tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; tryptophanase 4625739 12707937 EcDH1_4259 Escherichia coli DH1 tryptophanase YP_006094146.1 4624324 R 536056 CDS YP_006094147.1 386597747 12707938 complement(4626277..4627641) 1 NC_017625.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: sbc:SbBS512_E4219 tRNA modification GTPase TrmE; tRNA modification GTPase TrmE 4627641 12707938 EcDH1_4260 Escherichia coli DH1 tRNA modification GTPase TrmE YP_006094147.1 4626277 R 536056 CDS YP_006094148.1 386597748 12707939 complement(4627747..4629393) 1 NC_017625.1 TIGRFAM: YidC translocase/secretase; PFAM: 60 kDa inner membrane insertion protein; KEGG: ssn:SSON_3656 putative inner membrane protein translocase component YidC; YidC translocase/secretase 4629393 12707939 EcDH1_4261 Escherichia coli DH1 YidC translocase/secretase YP_006094148.1 4627747 R 536056 CDS YP_006094149.1 386597749 12707940 complement(4629617..4629943) 1 NC_017625.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sdy:SDY_4186 ribonuclease P; ribonuclease P protein component 4629943 12707940 EcDH1_4262 Escherichia coli DH1 ribonuclease P protein component YP_006094149.1 4629617 R 536056 CDS YP_006094150.1 386597750 12707941 complement(4629993..4630133) 1 NC_017625.1 PFAM: ribosomal protein L34; KEGG: kpe:KPK_5567 ribosomal protein L34; 50S ribosomal protein L34 4630133 12707941 EcDH1_4263 Escherichia coli DH1 50S ribosomal protein L34 YP_006094150.1 4629993 R 536056 CDS