-- dump date 20140619_081245 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 1274814000001 SEQ_END SEQ_END NC_020163.1 4798435 4798435 DR NC_020163.1; contig end 4798435..4798435 Escherichia coli APEC O78 YP_007379187.1 CDS APECO78_00005 NC_020163.1 61 423 R COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein B complement(61..423) Escherichia coli APEC O78 14484666 YP_007379188.1 CDS APECO78_00010 NC_020163.1 541 1125 R COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein complement(541..1125) Escherichia coli APEC O78 14479990 YP_007379189.1 CDS APECO78_00015 NC_020163.1 1195 1464 D COG3084 Uncharacterized protein conserved in bacteria; hypothetical protein 1195..1464 Escherichia coli APEC O78 14479991 YP_007379190.1 CDS APECO78_00020 NC_020163.1 1541 2527 D COG2334 Putative homoserine kinase type II (protein kinase fold); hypothetical protein 1541..2527 Escherichia coli APEC O78 14479992 YP_007379191.1 CDS APECO78_00025 NC_020163.1 2544 3170 D COG0526 Thiol-disulfide isomerase and thioredoxins; protein disulfide isomerase I 2544..3170 Escherichia coli APEC O78 14479993 YP_007379192.1 CDS APECO78_00030 NC_020163.1 3325 4755 D COG5339 Uncharacterized protein conserved in bacteria; hypothetical protein 3325..4755 Escherichia coli APEC O78 14479994 YP_007379193.1 CDS APECO78_00035 NC_020163.1 4796 5728 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; acyltransferase complement(4796..5728) Escherichia coli APEC O78 14479995 YP_007379194.1 CDS APECO78_00040 NC_020163.1 5848 6090 R hypothetical protein complement(5848..6090) Escherichia coli APEC O78 14479996 YP_007379195.1 CDS APECO78_00045 NC_020163.1 6092 8878 D COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I 6092..8878 Escherichia coli APEC O78 14479997 YP_007379196.1 CDS engB NC_020163.1 9260 9892 R COG0218 Predicted GTPase; GTP-binding protein YsxC complement(9260..9892) Escherichia coli APEC O78 14479998 YP_007379197.1 CDS APECO78_00055 NC_020163.1 10189 10266 D hypothetical protein 10189..10266 Escherichia coli APEC O78 14479999 YP_007379198.1 CDS APECO78_00060 NC_020163.1 10474 10983 D COG3078 Uncharacterized protein conserved in bacteria; GTPase activator 10474..10983 Escherichia coli APEC O78 14480000 YP_007379199.1 CDS APECO78_00065 NC_020163.1 11172 12545 D COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 11172..12545 Escherichia coli APEC O78 14480001 YP_007379200.1 CDS APECO78_00070 NC_020163.1 12735 12845 R hypothetical protein complement(12735..12845) Escherichia coli APEC O78 14480002 YP_007379201.1 CDS glnG NC_020163.1 12957 14366 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; nitrogen regulation protein NR(I) complement(12957..14366) Escherichia coli APEC O78 14480003 YP_007379202.1 CDS APECO78_00080 NC_020163.1 14378 15427 R COG3852 Signal transduction histidine kinase, nitrogen specific; nitrogen regulation protein NR(II) complement(14378..15427) Escherichia coli APEC O78 14480004 YP_007379203.1 CDS APECO78_00085 NC_020163.1 15526 15705 D hypothetical protein 15526..15705 Escherichia coli APEC O78 14480005 YP_007379204.1 CDS APECO78_00090 NC_020163.1 15746 17155 R COG0174 Glutamine synthetase; glutamine synthetase complement(15746..17155) Escherichia coli APEC O78 14480006 YP_007379205.1 CDS APECO78_00095 NC_020163.1 17528 19351 D COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein 17528..19351 Escherichia coli APEC O78 14480007 YP_007379206.1 CDS APECO78_00100 NC_020163.1 19568 20278 D COG2188 Transcriptional regulators; GntR family transcriptional regulator 19568..20278 Escherichia coli APEC O78 14480008 YP_007379207.1 CDS APECO78_00105 NC_020163.1 20286 21266 D COG1082 Sugar phosphate isomerases/epimerases; sugar phosphate isomerase 20286..21266 Escherichia coli APEC O78 14480009 YP_007379208.1 CDS APECO78_00110 NC_020163.1 21368 22633 D COG0477 Permeases of the major facilitator superfamily; transporter 21368..22633 Escherichia coli APEC O78 14480010 YP_007379209.1 CDS ompL NC_020163.1 22724 23416 R outer membrane porin L complement(22724..23416) Escherichia coli APEC O78 14480011 YP_007379210.1 CDS APECO78_00120 NC_020163.1 23484 24887 R COG2211 Na+/melibiose symporter and related transporters; putative transporter complement(23484..24887) Escherichia coli APEC O78 14480012 YP_007379211.1 CDS APECO78_00125 NC_020163.1 24930 26315 R COG2211 Na+/melibiose symporter and related transporters; putative transport protein complement(24930..26315) Escherichia coli APEC O78 14480013 YP_007379212.1 CDS APECO78_00130 NC_020163.1 26361 28397 R COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase complement(26361..28397) Escherichia coli APEC O78 14480014 YP_007379213.1 CDS APECO78_00135 NC_020163.1 28596 29498 R COG2017 Galactose mutarotase and related enzymes; aldose-1-epimerase complement(28596..29498) Escherichia coli APEC O78 14480015 YP_007379214.1 CDS APECO78_00140 NC_020163.1 29636 30877 R COG2942 N-acyl-D-glucosamine 2-epimerase; putative glucosamine isomerase complement(29636..30877) Escherichia coli APEC O78 14480016 YP_007379215.1 CDS APECO78_00145 NC_020163.1 30894 31772 R COG3684 Tagatose-1,6-bisphosphate aldolase; putative aldolase complement(30894..31772) Escherichia coli APEC O78 14480017 YP_007379216.1 CDS APECO78_00150 NC_020163.1 31796 32692 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; NADH-dependent gamma-hydroxybutyrate dehydrogenase complement(31796..32692) Escherichia coli APEC O78 14480018 YP_007379217.1 CDS APECO78_00155 NC_020163.1 32860 33756 D COG0524 Sugar kinases, ribokinase family; putative sugar kinase 32860..33756 Escherichia coli APEC O78 14480019 YP_007379218.1 CDS APECO78_00160 NC_020163.1 33790 34575 D COG1349 Transcriptional regulators of sugar metabolism; transcriptional regulator 33790..34575 Escherichia coli APEC O78 14480020 YP_007379219.1 CDS APECO78_00165 NC_020163.1 34674 35273 D COG1011 Predicted hydrolase (HAD superfamily); alpha-D-glucose-1-phosphatase 34674..35273 Escherichia coli APEC O78 14480021 YP_007379220.1 CDS APECO78_00170 NC_020163.1 35267 36139 D COG1295 Predicted membrane protein; hypothetical protein 35267..36139 Escherichia coli APEC O78 14480022 YP_007379221.1 CDS APECO78_00175 NC_020163.1 36136 36573 D COG1490 D-Tyr-tRNAtyr deacylase; D-tyrosyl-tRNA(Tyr) deacylase 36136..36573 Escherichia coli APEC O78 14480023 YP_007379222.1 CDS APECO78_00180 NC_020163.1 36570 37559 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 36570..37559 Escherichia coli APEC O78 14480024 YP_007379223.1 CDS APECO78_00185 NC_020163.1 37974 38081 D hypothetical protein 37974..38081 Escherichia coli APEC O78 14480025 YP_007379224.1 CDS APECO78_00190 NC_020163.1 38416 38634 D COG3905 Predicted transcriptional regulator; transcriptional regulator 38416..38634 Escherichia coli APEC O78 14480026 YP_007379225.1 CDS APECO78_00195 NC_020163.1 38852 39094 D COG1219 ATP-dependent protease Clp, ATPase subunit; YiiF protein 38852..39094 Escherichia coli APEC O78 14480027 YP_007379226.1 CDS APECO78_00200 NC_020163.1 39110 39244 R hypothetical protein complement(39110..39244) Escherichia coli APEC O78 14480028 YP_007379227.1 CDS APECO78_00205 NC_020163.1 39424 40353 R COG3058 Uncharacterized protein involved in formate dehydrogenase formation; putative formate dehydrogenase formation protein complement(39424..40353) Escherichia coli APEC O78 14480029 YP_007379228.1 CDS APECO78_00210 NC_020163.1 40350 40985 R COG2864 Cytochrome b subunit of formate dehydrogenase; formate dehydrogenase-O subunit gamma complement(40350..40985) Escherichia coli APEC O78 14480030 YP_007379229.1 CDS APECO78_00215 NC_020163.1 40982 41884 R COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-O, iron-sulfur subunit complement(40982..41884) Escherichia coli APEC O78 14480031 YP_007379230.1 CDS APECO78_00220 NC_020163.1 41897 44311 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-O major subunit complement(41897..44311) Escherichia coli APEC O78 14480032 YP_007379231.1 CDS APECO78_00225 NC_020163.1 44360 44947 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-O major subunit complement(44360..44947) Escherichia coli APEC O78 14480033 YP_007379232.1 CDS APECO78_00230 NC_020163.1 45141 45974 D COG1526 Uncharacterized protein required for formate dehydrogenase activity; formate dehydrogenase accessory protein 45141..45974 Escherichia coli APEC O78 14480034 YP_007379233.1 CDS APECO78_00235 NC_020163.1 46127 47167 D hypothetical protein 46127..47167 Escherichia coli APEC O78 14480035 YP_007379234.1 CDS APECO78_00240 NC_020163.1 47217 48965 R COG3711 Transcriptional antiterminator; frv operon regulatory protein complement(47217..48965) Escherichia coli APEC O78 14480036 YP_007379235.1 CDS APECO78_00245 NC_020163.1 48965 50035 R COG1363 Cellulase M and related proteins; peptidase complement(48965..50035) Escherichia coli APEC O78 14480037 YP_007379236.1 CDS APECO78_00250 NC_020163.1 50025 51476 R COG1445 Phosphotransferase system fructose-specific component IIB; PTS system subunit IIC complement(50025..51476) Escherichia coli APEC O78 14480038 YP_007379237.1 CDS APECO78_00255 NC_020163.1 51487 51933 R COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); fructose-like phosphotransferase system subunit EIIA complement(51487..51933) Escherichia coli APEC O78 14480039 YP_007379238.1 CDS APECO78_00260 NC_020163.1 52234 52548 R COG3254 Uncharacterized conserved protein; L-rhamnose mutarotase complement(52234..52548) Escherichia coli APEC O78 14480040 YP_007379239.1 CDS APECO78_00265 NC_020163.1 52558 53382 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; rhamnulose-1-phosphate aldolase complement(52558..53382) Escherichia coli APEC O78 14480041 YP_007379240.1 CDS APECO78_00270 NC_020163.1 53465 54724 R COG4806 L-rhamnose isomerase; L-rhamnose isomerase complement(53465..54724) Escherichia coli APEC O78 14480042 YP_007379241.1 CDS rhaB NC_020163.1 54721 56190 R COG1070 Sugar (pentulose and hexulose) kinases; rhamnulokinase complement(54721..56190) Escherichia coli APEC O78 14480043 YP_007379242.1 CDS APECO78_00280 NC_020163.1 56269 56418 D hypothetical protein 56269..56418 Escherichia coli APEC O78 14480044 YP_007379243.1 CDS APECO78_00285 NC_020163.1 56478 57314 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaS 56478..57314 Escherichia coli APEC O78 14480045 YP_007379244.1 CDS APECO78_00290 NC_020163.1 57298 58236 D COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaR 57298..58236 Escherichia coli APEC O78 14480046 YP_007379245.1 CDS APECO78_00295 NC_020163.1 58233 59267 R rhamnose-proton symporter complement(58233..59267) Escherichia coli APEC O78 14480047 YP_007379246.1 CDS APECO78_00300 NC_020163.1 59552 60172 D COG0605 Superoxide dismutase; superoxide dismutase 59552..60172 Escherichia coli APEC O78 14480048 YP_007379247.1 CDS APECO78_00305 NC_020163.1 60432 61415 D 2-keto-3-deoxygluconate permease 60432..61415 Escherichia coli APEC O78 14480049 YP_007379248.1 CDS APECO78_00310 NC_020163.1 61564 62238 D COG2258 Uncharacterized protein conserved in bacteria; 6-N-hydroxylaminopurine resistance protein 61564..62238 Escherichia coli APEC O78 14480050 YP_007379249.1 CDS cpxA NC_020163.1 62344 63717 R COG0642 Signal transduction histidine kinase; two-component sensor protein complement(62344..63717) Escherichia coli APEC O78 14480051 YP_007379250.1 CDS APECO78_00320 NC_020163.1 63714 64412 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator CpxR complement(63714..64412) Escherichia coli APEC O78 14480052 YP_007379251.1 CDS cpxP NC_020163.1 64562 65062 D COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; periplasmic repressor CpxP 64562..65062 Escherichia coli APEC O78 14480053 YP_007379252.1 CDS fieF NC_020163.1 65211 66113 D COG0053 Predicted Co/Zn/Cd cation transporters; ferrous iron efflux protein F 65211..66113 Escherichia coli APEC O78 14480054 YP_007379253.1 CDS APECO78_00335 NC_020163.1 66294 67256 D COG0205 6-phosphofructokinase; 6-phosphofructokinase 66294..67256 Escherichia coli APEC O78 14480055 YP_007379254.1 CDS APECO78_00340 NC_020163.1 67576 68565 D COG1613 ABC-type sulfate transport system, periplasmic component; sulfate transporter subunit 67576..68565 Escherichia coli APEC O78 14480056 YP_007379255.1 CDS APECO78_00345 NC_020163.1 68672 69427 D COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 68672..69427 Escherichia coli APEC O78 14480057 YP_007379256.1 CDS APECO78_00350 NC_020163.1 69482 70249 R COG0149 Triosephosphate isomerase; triosephosphate isomerase complement(69482..70249) Escherichia coli APEC O78 14480058 YP_007379257.1 CDS APECO78_00355 NC_020163.1 70357 70956 R hypothetical protein complement(70357..70956) Escherichia coli APEC O78 14480059 YP_007379258.1 CDS APECO78_00360 NC_020163.1 71057 71497 D COG3152 Predicted membrane protein; inner membrane protein 71057..71497 Escherichia coli APEC O78 14480060 YP_007379259.1 CDS APECO78_00365 NC_020163.1 71709 72008 D COG3691 Uncharacterized protein conserved in bacteria; hypothetical protein 71709..72008 Escherichia coli APEC O78 14480061 YP_007379260.1 CDS APECO78_00370 NC_020163.1 72035 72463 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspD 72035..72463 Escherichia coli APEC O78 14480062 YP_007379261.1 CDS APECO78_00375 NC_020163.1 72468 73214 R COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; ferredoxin-NADP reductase complement(72468..73214) Escherichia coli APEC O78 14480063 YP_007379262.1 CDS glpX NC_020163.1 73311 74321 R COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; fructose 1,6-bisphosphatase II complement(73311..74321) Escherichia coli APEC O78 14480064 YP_007379263.1 CDS APECO78_00385 NC_020163.1 74454 75962 R COG0554 Glycerol kinase; glycerol kinase complement(74454..75962) Escherichia coli APEC O78 14480065 YP_007379264.1 CDS APECO78_00390 NC_020163.1 75985 76830 R COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein complement(75985..76830) Escherichia coli APEC O78 14480066 YP_007379265.1 CDS APECO78_00395 NC_020163.1 77262 77501 D COG3074 Uncharacterized protein conserved in bacteria; hypothetical protein 77262..77501 Escherichia coli APEC O78 14480067 YP_007379266.1 CDS APECO78_00400 NC_020163.1 77586 78071 R COG0684 Demethylmenaquinone methyltransferase; ribonuclease activity regulator protein RraA complement(77586..78071) Escherichia coli APEC O78 14480068 YP_007379267.1 CDS APECO78_00405 NC_020163.1 78164 79090 R COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoateoctaprenyltransferase complement(78164..79090) Escherichia coli APEC O78 14480069 YP_007379268.1 CDS APECO78_00410 NC_020163.1 79157 80488 R COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU complement(79157..80488) Escherichia coli APEC O78 14480070 YP_007379269.1 CDS APECO78_00415 NC_020163.1 80498 81028 R COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease subunit HslV complement(80498..81028) Escherichia coli APEC O78 14480071 YP_007379270.1 CDS APECO78_00420 NC_020163.1 81121 82080 R COG3087 Cell division protein; essential cell division protein FtsN complement(81121..82080) Escherichia coli APEC O78 14480072 YP_007379271.1 CDS APECO78_00425 NC_020163.1 82172 83197 R COG1609 Transcriptional regulators; DNA-binding transcriptional regulator CytR complement(82172..83197) Escherichia coli APEC O78 14480073 YP_007379272.1 CDS APECO78_00430 NC_020163.1 83353 85551 R COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; Primosomal protein N' complement(83353..85551) Escherichia coli APEC O78 14480074 YP_007379273.1 CDS APECO78_00435 NC_020163.1 85754 85966 D COG0254 Ribosomal protein L31; 50S ribosomal protein L31 85754..85966 Escherichia coli APEC O78 14480075 YP_007379274.1 CDS APECO78_00440 NC_020163.1 86126 86458 D COG3209 Rhs family protein; rhsA element core protein RshA 86126..86458 Escherichia coli APEC O78 14480076 YP_007379275.1 CDS APECO78_00445 NC_020163.1 86416 90309 D COG3209 Rhs family protein; RhsE core protein 86416..90309 Escherichia coli APEC O78 14480077 YP_007379276.1 CDS APECO78_00450 NC_020163.1 90604 90918 R COG1662 Transposase and inactivated derivatives, IS1 family; iso-IS1 InsB protein, transposase complement(90604..90918) Escherichia coli APEC O78 14480078 YP_007379277.1 CDS APECO78_00455 NC_020163.1 90912 91097 R COG1662 Transposase and inactivated derivatives, IS1 family; transposase complement(90912..91097) Escherichia coli APEC O78 14480079 YP_007379278.1 CDS APECO78_00460 NC_020163.1 91124 91396 R COG3677 Transposase and inactivated derivatives; hypothetical protein complement(91124..91396) Escherichia coli APEC O78 14480080 YP_007379279.1 CDS APECO78_00465 NC_020163.1 91541 92149 R peptidoglycan peptidase complement(91541..92149) Escherichia coli APEC O78 14480081 YP_007379280.1 CDS APECO78_00470 NC_020163.1 92333 92650 R COG3060 Transcriptional regulator of met regulon; Transcriptional repressor complement(92333..92650) Escherichia coli APEC O78 14480082 YP_007379281.1 CDS APECO78_00475 NC_020163.1 92699 92788 R transcriptional repressor protein MetJ complement(92699..92788) Escherichia coli APEC O78 14480083 YP_007379282.1 CDS APECO78_00480 NC_020163.1 92927 94087 D COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase 92927..94087 Escherichia coli APEC O78 14480084 YP_007379283.1 CDS metL NC_020163.1 94090 96522 D COG0527 Aspartokinases; bifunctional aspartate kinase II/homoserine dehydrogenase II 94090..96522 Escherichia coli APEC O78 14480085 YP_007379284.1 CDS APECO78_00490 NC_020163.1 96661 96795 R hypothetical protein complement(96661..96795) Escherichia coli APEC O78 14480086 YP_007379285.1 CDS APECO78_00495 NC_020163.1 96871 97761 D COG0685 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 96871..97761 Escherichia coli APEC O78 14480087 YP_007379286.1 CDS APECO78_00500 NC_020163.1 98090 100270 D COG0376 Catalase (peroxidase I); catalase/hydroperoxidase HPI(I) 98090..100270 Escherichia coli APEC O78 14480088 YP_007379287.1 CDS APECO78_00505 NC_020163.1 100364 101269 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 100364..101269 Escherichia coli APEC O78 14480089 YP_007379288.1 CDS APECO78_00510 NC_020163.1 101296 101913 R COG3738 Uncharacterized protein conserved in bacteria; hypothetical protein complement(101296..101913) Escherichia coli APEC O78 14480090 YP_007379289.1 CDS APECO78_00515 NC_020163.1 102025 102156 R hypothetical protein complement(102025..102156) Escherichia coli APEC O78 14480091 YP_007379290.1 CDS APECO78_00520 NC_020163.1 102188 103291 R COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase complement(102188..103291) Escherichia coli APEC O78 14480092 YP_007379291.1 CDS APECO78_00525 NC_020163.1 103302 103964 R COG0176 Transaldolase; fructose-6-phosphate aldolase complement(103302..103964) Escherichia coli APEC O78 14480093 YP_007379292.1 CDS APECO78_00530 NC_020163.1 103976 106477 R COG1925 Phosphotransferase system, HPr-related proteins; mulitfunctional phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system fructose-like transporter subunit IIA complement(103976..106477) Escherichia coli APEC O78 14480094 YP_007379293.1 CDS APECO78_00535 NC_020163.1 106786 107865 D COG1299 Phosphotransferase system, fructose-specific IIC component; PTS system, fructose-like-2 IIC component 106786..107865 Escherichia coli APEC O78 14480095 YP_007379294.1 CDS APECO78_00540 NC_020163.1 107880 108200 D COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-like transporter subunit IIB 107880..108200 Escherichia coli APEC O78 14480096 YP_007379295.1 CDS pflD NC_020163.1 108251 110548 D COG1882 Pyruvate-formate lyase; formate acetyltransferase 2 108251..110548 Escherichia coli APEC O78 14480097 YP_007379296.1 CDS APECO78_00550 NC_020163.1 110514 111392 D COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase II activase 110514..111392 Escherichia coli APEC O78 14480098 YP_007379297.1 CDS APECO78_00555 NC_020163.1 111394 111735 D COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-like transporter subunit EIIB 111394..111735 Escherichia coli APEC O78 14480099 YP_007379298.1 CDS APECO78_00560 NC_020163.1 111722 112573 R COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator complement(111722..112573) Escherichia coli APEC O78 14480100 YP_007379299.1 CDS APECO78_00565 NC_020163.1 112722 114455 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein complement(112722..114455) Escherichia coli APEC O78 14480101 YP_007379300.1 CDS APECO78_00570 NC_020163.1 114638 117289 R COG2352 Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(114638..117289) Escherichia coli APEC O78 14480102 YP_007379301.1 CDS APECO78_00575 NC_020163.1 117641 118792 R COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; acetylornithine deacetylase complement(117641..118792) Escherichia coli APEC O78 14480103 YP_007379302.1 CDS APECO78_00580 NC_020163.1 118946 119950 D COG0002 Acetylglutamate semialdehyde dehydrogenase; N-acetyl-gamma-glutamyl-phosphate reductase 118946..119950 Escherichia coli APEC O78 14480104 YP_007379303.1 CDS APECO78_00585 NC_020163.1 119961 120734 D COG0548 Acetylglutamate kinase; acetylglutamate kinase 119961..120734 Escherichia coli APEC O78 14480105 YP_007379304.1 CDS APECO78_00590 NC_020163.1 120795 122168 D COG0165 Argininosuccinate lyase; argininosuccinate lyase 120795..122168 Escherichia coli APEC O78 14480106 YP_007379305.1 CDS APECO78_00595 NC_020163.1 122665 123879 D COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; bifunctional D-altronate/D-mannonate dehydratase 122665..123879 Escherichia coli APEC O78 14480107 YP_007379306.1 CDS APECO78_00600 NC_020163.1 123946 125229 D COG0477 Permeases of the major facilitator superfamily; transporter 123946..125229 Escherichia coli APEC O78 14480108 YP_007379307.1 CDS APECO78_00605 NC_020163.1 125481 126398 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator OxyR 125481..126398 Escherichia coli APEC O78 14480109 YP_007379308.1 CDS APECO78_00610 NC_020163.1 126381 127781 R COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; soluble pyridine nucleotide transhydrogenase complement(126381..127781) Escherichia coli APEC O78 14480110 YP_007379309.1 CDS APECO78_00615 NC_020163.1 128058 128762 D COG1309 Transcriptional regulator; putative transcriptional regulator 128058..128762 Escherichia coli APEC O78 14480111 YP_007379310.1 CDS APECO78_00620 NC_020163.1 128762 129121 D hypothetical protein 128762..129121 Escherichia coli APEC O78 14480112 YP_007379311.1 CDS APECO78_00625 NC_020163.1 129161 130261 R COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (uracil-5-)-methyltransferase complement(129161..130261) Escherichia coli APEC O78 14480113 YP_007379312.1 CDS btuB NC_020163.1 130630 132474 D COG4206 Outer membrane cobalamin receptor protein; vitamin B12/cobalamin outer membrane transporter 130630..132474 Escherichia coli APEC O78 14480114 YP_007379313.1 CDS APECO78_00635 NC_020163.1 132419 133276 D COG0796 Glutamate racemase; glutamate racemase 132419..133276 Escherichia coli APEC O78 14480115 YP_007379314.1 CDS APECO78_00640 NC_020163.1 138829 139857 D COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase 138829..139857 Escherichia coli APEC O78 14484667 YP_007379315.1 CDS APECO78_00645 NC_020163.1 139854 140819 D COG1654 Biotin operon repressor; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 139854..140819 Escherichia coli APEC O78 14480117 YP_007379316.1 CDS APECO78_00650 NC_020163.1 140848 141798 R COG1072 Panthothenate kinase; pantothenate kinase complement(140848..141798) Escherichia coli APEC O78 14480118 YP_007379317.1 CDS APECO78_00660 NC_020163.1 142716 143900 D COG0050 GTPases - translation elongation factors; elongation factor Tu 142716..143900 Escherichia coli APEC O78 14484582 YP_007379318.1 CDS APECO78_00665 NC_020163.1 144130 144513 D COG0690 Preprotein translocase subunit SecE; preprotein translocase subunit SecE 144130..144513 Escherichia coli APEC O78 14480120 YP_007379319.1 CDS APECO78_00670 NC_020163.1 144515 145060 D COG0250 Transcription antiterminator; transcription antitermination protein NusG 144515..145060 Escherichia coli APEC O78 14480121 YP_007379320.1 CDS APECO78_00675 NC_020163.1 145219 145647 D COG0080 Ribosomal protein L11; 50S ribosomal protein L11 145219..145647 Escherichia coli APEC O78 14480122 YP_007379321.1 CDS APECO78_00680 NC_020163.1 145651 146355 D COG0081 Ribosomal protein L1; 50S ribosomal protein L1 145651..146355 Escherichia coli APEC O78 14480123 YP_007379322.1 CDS APECO78_00685 NC_020163.1 146768 147265 D COG0244 Ribosomal protein L10; 50S ribosomal protein L10 146768..147265 Escherichia coli APEC O78 14480124 YP_007379323.1 CDS APECO78_00690 NC_020163.1 147332 147697 D COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 147332..147697 Escherichia coli APEC O78 14480125 YP_007379324.1 CDS APECO78_00695 NC_020163.1 148017 152045 D COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta 148017..152045 Escherichia coli APEC O78 14480126 YP_007379325.1 CDS APECO78_00700 NC_020163.1 152122 156345 D COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-directed RNA polymerase subunit beta' 152122..156345 Escherichia coli APEC O78 14480127 YP_007379326.1 CDS APECO78_00705 NC_020163.1 156558 157097 D stationary phase growth adaptation protein 156558..157097 Escherichia coli APEC O78 14480128 YP_007379327.1 CDS APECO78_00710 NC_020163.1 157507 158640 R COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; thiamine biosynthesis protein ThiH complement(157507..158640) Escherichia coli APEC O78 14480129 YP_007379328.1 CDS APECO78_00715 NC_020163.1 158637 159407 R COG2022 Uncharacterized enzyme of thiazole biosynthesis; thiazole biosynthesis protein complement(158637..159407) Escherichia coli APEC O78 14480130 YP_007379329.1 CDS APECO78_00720 NC_020163.1 159409 159609 R COG2104 Sulfur transfer protein involved in thiamine biosynthesis; sulfur carrier protein ThiS complement(159409..159609) Escherichia coli APEC O78 14480131 YP_007379330.1 CDS APECO78_00725 NC_020163.1 159593 160348 R COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; thiamin biosynthesis protein ThiF complement(159593..160348) Escherichia coli APEC O78 14480132 YP_007379331.1 CDS APECO78_00730 NC_020163.1 160341 160976 R COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(160341..160976) Escherichia coli APEC O78 14480133 YP_007379332.1 CDS APECO78_00735 NC_020163.1 160976 162871 R COG0422 Thiamine biosynthesis protein ThiC; phosphomethylpyrimidine synthase ThiC complement(160976..162871) Escherichia coli APEC O78 14480134 YP_007379333.1 CDS APECO78_00740 NC_020163.1 163104 163580 R COG3160 Regulator of sigma D; anti-RNA polymerase sigma 70 factor complement(163104..163580) Escherichia coli APEC O78 14480135 YP_007379334.1 CDS APECO78_00745 NC_020163.1 163675 164448 D COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding; NADH pyrophosphatase 163675..164448 Escherichia coli APEC O78 14480136 YP_007379335.1 CDS APECO78_00750 NC_020163.1 164488 165552 D COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 164488..165552 Escherichia coli APEC O78 14480137 YP_007379336.1 CDS APECO78_00755 NC_020163.1 165562 166233 D COG1515 Deoxyinosine 3'endonuclease (endonuclease V); endonuclease V 165562..166233 Escherichia coli APEC O78 14480138 YP_007379337.1 CDS APECO78_00760 NC_020163.1 166276 166866 D COG3068 Uncharacterized protein conserved in bacteria; hypothetical protein 166276..166866 Escherichia coli APEC O78 14480139 YP_007379338.1 CDS APECO78_00765 NC_020163.1 167053 167325 D COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit alpha 167053..167325 Escherichia coli APEC O78 14480140 YP_007379339.1 CDS APECO78_00770 NC_020163.1 167338 168033 D hypothetical protein 167338..168033 Escherichia coli APEC O78 14480141 YP_007379340.1 CDS zraP NC_020163.1 168035 168460 R COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; zinc resistance protein complement(168035..168460) Escherichia coli APEC O78 14480142 YP_007379341.1 CDS APECO78_00780 NC_020163.1 168698 170074 D COG0642 Signal transduction histidine kinase; sensor protein ZraS 168698..170074 Escherichia coli APEC O78 14480143 YP_007379342.1 CDS APECO78_00785 NC_020163.1 170071 171396 D COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; transcriptional regulatory protein ZraR 170071..171396 Escherichia coli APEC O78 14480144 YP_007379343.1 CDS APECO78_00790 NC_020163.1 171393 172682 R COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase complement(171393..172682) Escherichia coli APEC O78 14480145 YP_007379344.1 CDS purH NC_020163.1 172694 174283 R COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(172694..174283) Escherichia coli APEC O78 14480146 YP_007379345.1 CDS APECO78_00800 NC_020163.1 180079 180462 D COG1077 Actin-like ATPase involved in cell morphogenesis; hypothetical protein 180079..180462 Escherichia coli APEC O78 14484668 YP_007379346.1 CDS APECO78_00805 NC_020163.1 180525 180968 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(180525..180968) Escherichia coli APEC O78 14480148 YP_007379347.1 CDS APECO78_00810 NC_020163.1 181125 182054 D COG1897 Homoserine trans-succinylase; homoserine O-succinyltransferase 181125..182054 Escherichia coli APEC O78 14480149 YP_007379348.1 CDS APECO78_00815 NC_020163.1 182323 183924 D COG2225 Malate synthase; malate synthase 182323..183924 Escherichia coli APEC O78 14480150 YP_007379349.1 CDS APECO78_00820 NC_020163.1 183954 185258 D COG2224 Isocitrate lyase; isocitrate lyase 183954..185258 Escherichia coli APEC O78 14480151 YP_007379350.1 CDS aceK NC_020163.1 185539 187275 D COG4579 Isocitrate dehydrogenase kinase/phosphatase; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 185539..187275 Escherichia coli APEC O78 14480152 YP_007379351.1 CDS APECO78_00830 NC_020163.1 187244 188818 R T3SS effector-like protein EspL complement(187244..188818) Escherichia coli APEC O78 14480153 YP_007379352.1 CDS APECO78_00835 NC_020163.1 189135 189959 R COG1414 Transcriptional regulator; Acetate operon repressor complement(189135..189959) Escherichia coli APEC O78 14480154 YP_007379353.1 CDS metH NC_020163.1 190159 193842 D COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain; B12-dependent methionine synthase 190159..193842 Escherichia coli APEC O78 14480155 YP_007379354.1 CDS APECO78_00845 NC_020163.1 194062 195693 D COG1283 Na+/phosphate symporter; transporter 194062..195693 Escherichia coli APEC O78 14480156 YP_007379355.1 CDS APECO78_00850 NC_020163.1 195784 196473 R COG3340 Peptidase E; (alpha)-aspartyl dipeptidase complement(195784..196473) Escherichia coli APEC O78 14480157 YP_007379356.1 CDS APECO78_00855 NC_020163.1 196581 196736 D hypothetical protein 196581..196736 Escherichia coli APEC O78 14480158 YP_007379357.1 CDS APECO78_00860 NC_020163.1 196856 198085 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; putative L-sorbose 1-phosphate dehydrogenase complement(196856..198085) Escherichia coli APEC O78 14480159 YP_007379358.1 CDS APECO78_00865 NC_020163.1 198137 198961 R COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; sorbose permease IID component complement(198137..198961) Escherichia coli APEC O78 14480160 YP_007379359.1 CDS APECO78_00870 NC_020163.1 198972 199769 R COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system mannose-specific transporter subunit IIC complement(198972..199769) Escherichia coli APEC O78 14480161 YP_007379360.1 CDS APECO78_00875 NC_020163.1 199835 200329 R COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; sorbose-specific PTS system EIIB component complement(199835..200329) Escherichia coli APEC O78 14480162 YP_007379361.1 CDS APECO78_00880 NC_020163.1 200329 200736 R COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; sorbose-permease PTS system IIA component complement(200329..200736) Escherichia coli APEC O78 14480163 YP_007379362.1 CDS APECO78_00885 NC_020163.1 200746 201552 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); sorbitol-6-phosphate 2-dehydrogenase complement(200746..201552) Escherichia coli APEC O78 14480164 YP_007379363.1 CDS APECO78_00890 NC_020163.1 201622 202569 R COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; sor-operon regulator complement(201622..202569) Escherichia coli APEC O78 14480165 YP_007379364.1 CDS APECO78_00895 NC_020163.1 202917 203789 D COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase F 202917..203789 Escherichia coli APEC O78 14480166 YP_007379365.1 CDS APECO78_00900 NC_020163.1 203790 204062 R hypothetical protein complement(203790..204062) Escherichia coli APEC O78 14480167 YP_007379366.1 CDS APECO78_00905 NC_020163.1 204592 205719 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 204592..205719 Escherichia coli APEC O78 14480168 YP_007379367.1 CDS APECO78_00910 NC_020163.1 205716 206516 D COG3541 Predicted nucleotidyltransferase; hypothetical protein 205716..206516 Escherichia coli APEC O78 14480169 YP_007379368.1 CDS APECO78_00915 NC_020163.1 206552 207478 R COG0464 ATPases of the AAA+ class; putative zeta toxin; poison-antidote element complement(206552..207478) Escherichia coli APEC O78 14480170 YP_007379369.1 CDS APECO78_00920 NC_020163.1 207623 208972 R COG0527 Aspartokinases; aspartate kinase III complement(207623..208972) Escherichia coli APEC O78 14480171 YP_007379370.1 CDS APECO78_00925 NC_020163.1 209497 211146 D COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 209497..211146 Escherichia coli APEC O78 14480172 YP_007379371.1 CDS APECO78_00930 NC_020163.1 211501 211743 D hypothetical protein 211501..211743 Escherichia coli APEC O78 14480173 YP_007379372.1 CDS APECO78_00935 NC_020163.1 211857 212495 D hypothetical protein 211857..212495 Escherichia coli APEC O78 14480174 YP_007379373.1 CDS APECO78_00940 NC_020163.1 212492 213229 D hypothetical protein 212492..213229 Escherichia coli APEC O78 14480175 YP_007379374.1 CDS APECO78_00945 NC_020163.1 213229 215325 D porin 213229..215325 Escherichia coli APEC O78 14480176 YP_007379375.1 CDS APECO78_00950 NC_020163.1 215372 215650 R hypothetical protein complement(215372..215650) Escherichia coli APEC O78 14480177 YP_007379376.1 CDS APECO78_00955 NC_020163.1 215651 215794 D hypothetical protein 215651..215794 Escherichia coli APEC O78 14480178 YP_007379377.1 CDS APECO78_00960 NC_020163.1 215920 216330 D COG3223 Predicted membrane protein; phosphate-starvation-inducible protein PsiE 215920..216330 Escherichia coli APEC O78 14480179 YP_007379378.1 CDS APECO78_00965 NC_020163.1 216374 217849 R COG0477 Permeases of the major facilitator superfamily; D-xylose transporter XylE complement(216374..217849) Escherichia coli APEC O78 14480180 YP_007379379.1 CDS APECO78_00970 NC_020163.1 218221 219111 R COG3833 ABC-type maltose transport systems, permease component; maltose transporter permease complement(218221..219111) Escherichia coli APEC O78 14480181 YP_007379380.1 CDS APECO78_00975 NC_020163.1 219126 220670 R COG1175 ABC-type sugar transport systems, permease components; maltose transport system permease protein malF complement(219126..220670) Escherichia coli APEC O78 14480182 YP_007379381.1 CDS APECO78_00980 NC_020163.1 220824 222014 R COG2182 Maltose-binding periplasmic proteins/domains; maltose ABC transporter substrate-binding protein complement(220824..222014) Escherichia coli APEC O78 14480183 YP_007379382.1 CDS APECO78_00985 NC_020163.1 222107 222202 R hypothetical protein complement(222107..222202) Escherichia coli APEC O78 14480184 YP_007379383.1 CDS APECO78_00990 NC_020163.1 222379 223494 D COG3839 ABC-type sugar transport systems, ATPase components; maltose/maltodextrin transporter ATP-binding protein 222379..223494 Escherichia coli APEC O78 14480185 YP_007379384.1 CDS lamB NC_020163.1 223566 224906 D COG4580 Maltoporin (phage lambda and maltose receptor); maltoporin 223566..224906 Escherichia coli APEC O78 14480186 YP_007379385.1 CDS APECO78_01000 NC_020163.1 225149 226069 D maltose regulon periplasmic protein 225149..226069 Escherichia coli APEC O78 14480187 YP_007379386.1 CDS APECO78_01005 NC_020163.1 226298 226492 D hypothetical protein 226298..226492 Escherichia coli APEC O78 14480188 YP_007379387.1 CDS APECO78_01010 NC_020163.1 226550 227878 D COG1357 Uncharacterized low-complexity proteins; hypothetical protein 226550..227878 Escherichia coli APEC O78 14480189 YP_007379388.1 CDS ubiC NC_020163.1 228101 228598 D COG3161 4-hydroxybenzoate synthetase (chorismate lyase); chorismate pyruvate lyase 228101..228598 Escherichia coli APEC O78 14480190 YP_007379389.1 CDS ubiA NC_020163.1 228611 229483 D COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; 4-hydroxybenzoate octaprenyltransferase 228611..229483 Escherichia coli APEC O78 14480191 YP_007379390.1 CDS APECO78_01025 NC_020163.1 229638 232061 R COG2937 Glycerol-3-phosphate O-acyltransferase; glycerol-3-phosphate acyltransferase complement(229638..232061) Escherichia coli APEC O78 14480192 YP_007379391.1 CDS APECO78_01030 NC_020163.1 232232 232600 D COG0818 Diacylglycerol kinase; diacylglycerol kinase 232232..232600 Escherichia coli APEC O78 14480193 YP_007379392.1 CDS APECO78_01035 NC_020163.1 232710 233318 D COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); LexA repressor 232710..233318 Escherichia coli APEC O78 14480194 YP_007379393.1 CDS APECO78_01040 NC_020163.1 233391 234716 D COG0534 Na+-driven multidrug efflux pump; DNA-damage-inducible transport protein 233391..234716 Escherichia coli APEC O78 14480195 YP_007379394.1 CDS APECO78_01045 NC_020163.1 234832 235041 D COG3237 Uncharacterized protein conserved in bacteria; putative general stress response protein 234832..235041 Escherichia coli APEC O78 14480196 YP_007379395.1 CDS APECO78_01050 NC_020163.1 235083 235598 R COG0735 Fe2+/Zn2+ uptake regulation proteins; zinc uptake transcriptional repressor complement(235083..235598) Escherichia coli APEC O78 14480197 YP_007379396.1 CDS APECO78_01055 NC_020163.1 236225 236932 D hypothetical protein 236225..236932 Escherichia coli APEC O78 14480198 YP_007379397.1 CDS APECO78_01060 NC_020163.1 237289 237417 D phage protein 237289..237417 Escherichia coli APEC O78 14480199 YP_007379398.1 CDS APECO78_01065 NC_020163.1 237704 238177 D COG3600 Uncharacterized phage-associated protein; phage protein 237704..238177 Escherichia coli APEC O78 14480200 YP_007379399.1 CDS APECO78_01070 NC_020163.1 238200 238748 D hypothetical protein 238200..238748 Escherichia coli APEC O78 14480201 YP_007379400.1 CDS APECO78_01075 NC_020163.1 238782 239051 R hypothetical protein complement(238782..239051) Escherichia coli APEC O78 14480202 YP_007379401.1 CDS APECO78_01080 NC_020163.1 239088 239870 R hypothetical protein complement(239088..239870) Escherichia coli APEC O78 14480203 YP_007379402.1 CDS APECO78_01085 NC_020163.1 240057 240881 R COG5532 Uncharacterized conserved protein; hypothetical protein complement(240057..240881) Escherichia coli APEC O78 14480204 YP_007379403.1 CDS APECO78_01090 NC_020163.1 240946 241308 R hypothetical protein complement(240946..241308) Escherichia coli APEC O78 14480205 YP_007379404.1 CDS APECO78_01095 NC_020163.1 241975 242649 R COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); phage repressor protein complement(241975..242649) Escherichia coli APEC O78 14480206 YP_007379405.1 CDS APECO78_01100 NC_020163.1 242740 242961 D DNA-binding transcriptional regulator 242740..242961 Escherichia coli APEC O78 14480207 YP_007379406.1 CDS APECO78_01105 NC_020163.1 243065 243664 D hypothetical protein 243065..243664 Escherichia coli APEC O78 14480208 YP_007379407.1 CDS APECO78_01110 NC_020163.1 243729 247070 D hypothetical protein 243729..247070 Escherichia coli APEC O78 14480209 YP_007379408.1 CDS APECO78_01115 NC_020163.1 247266 247400 D hypothetical protein 247266..247400 Escherichia coli APEC O78 14480210 YP_007379409.1 CDS APECO78_01130 NC_020163.1 248855 249406 R hypothetical protein complement(248855..249406) Escherichia coli APEC O78 14480211 YP_007379410.1 CDS APECO78_01135 NC_020163.1 249719 250084 D COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 249719..250084 Escherichia coli APEC O78 14480212 YP_007379411.1 CDS APECO78_01140 NC_020163.1 250042 250947 D COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 250042..250947 Escherichia coli APEC O78 14480213 YP_007379412.1 CDS APECO78_01145 NC_020163.1 250964 251212 R DNA-damage-inducible protein complement(250964..251212) Escherichia coli APEC O78 14480214 YP_007379413.1 CDS APECO78_01150 NC_020163.1 251273 252370 R COG0582 Integrase; phage integrase complement(251273..252370) Escherichia coli APEC O78 14480215 YP_007379414.1 CDS APECO78_01155 NC_020163.1 252459 253496 D COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase A 252459..253496 Escherichia coli APEC O78 14480216 YP_007379415.1 CDS pspG NC_020163.1 253630 253872 D phage shock protein G 253630..253872 Escherichia coli APEC O78 14480217 YP_007379416.1 CDS APECO78_01165 NC_020163.1 254038 255021 R COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase, NADPH-dependent complement(254038..255021) Escherichia coli APEC O78 14480218 YP_007379417.1 CDS APECO78_01170 NC_020163.1 255104 256519 D COG0305 Replicative DNA helicase; replicative DNA helicase 255104..256519 Escherichia coli APEC O78 14480219 YP_007379418.1 CDS APECO78_01175 NC_020163.1 256572 257651 D COG0787 Alanine racemase; alanine racemase 256572..257651 Escherichia coli APEC O78 14480220 YP_007379419.1 CDS APECO78_01180 NC_020163.1 257904 259097 D COG1448 Aspartate/tyrosine/aromatic aminotransferase; tyrosine aminotransferase TyrB, tyrosine-repressible, PLP-dependent 257904..259097 Escherichia coli APEC O78 14480221 YP_007379420.1 CDS APECO78_01185 NC_020163.1 259319 259822 R hypothetical protein complement(259319..259822) Escherichia coli APEC O78 14480222 YP_007379421.1 CDS aphA NC_020163.1 260224 260937 D COG3700 Acid phosphatase (class B); acid phosphatase/phosphotransferase 260224..260937 Escherichia coli APEC O78 14480223 YP_007379422.1 CDS APECO78_01195 NC_020163.1 261048 261464 D COG0432 Uncharacterized conserved protein; hypothetical protein 261048..261464 Escherichia coli APEC O78 14480224 YP_007379423.1 CDS APECO78_01200 NC_020163.1 261468 261824 D COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein 261468..261824 Escherichia coli APEC O78 14480225 YP_007379424.1 CDS uvrA NC_020163.1 261859 264681 R COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A complement(261859..264681) Escherichia coli APEC O78 14480226 YP_007379425.1 CDS APECO78_01210 NC_020163.1 264935 265471 D COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 264935..265471 Escherichia coli APEC O78 14480227 YP_007379426.1 CDS APECO78_01215 NC_020163.1 265570 265851 R hypothetical protein complement(265570..265851) Escherichia coli APEC O78 14480228 YP_007379427.1 CDS APECO78_01220 NC_020163.1 266281 267867 D COG4943 Predicted signal transduction protein containing sensor and EAL domains; hypothetical protein 266281..267867 Escherichia coli APEC O78 14480229 YP_007379428.1 CDS APECO78_01225 NC_020163.1 267870 268193 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator SoxS complement(267870..268193) Escherichia coli APEC O78 14480230 YP_007379429.1 CDS APECO78_01230 NC_020163.1 268279 268743 D COG0789 Predicted transcriptional regulators; redox-sensitivie transcriptional activator Soxr 268279..268743 Escherichia coli APEC O78 14480231 YP_007379430.1 CDS APECO78_01235 NC_020163.1 269289 270638 D COG2252 Permeases; hypothetical protein 269289..270638 Escherichia coli APEC O78 14480232 YP_007379431.1 CDS APECO78_01240 NC_020163.1 270789 272438 D COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; cation/proton antiporter 270789..272438 Escherichia coli APEC O78 14480233 YP_007379432.1 CDS APECO78_01245 NC_020163.1 272592 273884 R COG1357 Uncharacterized low-complexity proteins; hypothetical protein complement(272592..273884) Escherichia coli APEC O78 14480234 YP_007379433.1 CDS actP NC_020163.1 274062 275711 R COG4147 Predicted symporter; acetate permease complement(274062..275711) Escherichia coli APEC O78 14480235 YP_007379434.1 CDS APECO78_01255 NC_020163.1 275708 276022 R COG3162 Predicted membrane protein; hypothetical protein complement(275708..276022) Escherichia coli APEC O78 14480236 YP_007379435.1 CDS APECO78_01260 NC_020163.1 276223 278181 R COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; acetyl-CoA synthetase complement(276223..278181) Escherichia coli APEC O78 14480237 YP_007379436.1 CDS APECO78_01265 NC_020163.1 278573 280009 D COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; cytochrome c nitrite reductase subunit c552 278573..280009 Escherichia coli APEC O78 14480238 YP_007379437.1 CDS APECO78_01270 NC_020163.1 280054 280620 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; cytochrome c nitrite reductase pentaheme subunit 280054..280620 Escherichia coli APEC O78 14480239 YP_007379438.1 CDS APECO78_01275 NC_020163.1 280617 281288 D COG0437 Fe-S-cluster-containing hydrogenase components 1; formate-dependent nitrite reductase 280617..281288 Escherichia coli APEC O78 14480240 YP_007379439.1 CDS APECO78_01280 NC_020163.1 281285 282241 D COG3301 Formate-dependent nitrite reductase, membrane component; formate-dependent nitrite reductase complex subunit NrfD 281285..282241 Escherichia coli APEC O78 14480241 YP_007379440.1 CDS APECO78_01285 NC_020163.1 282321 283979 D COG1138 Cytochrome c biogenesis factor; heme lyase subunit NrfE 282321..283979 Escherichia coli APEC O78 14480242 YP_007379441.1 CDS APECO78_01290 NC_020163.1 283972 284355 D COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; formate-dependent nitrite reductase complex subunit NrfF 283972..284355 Escherichia coli APEC O78 14480243 YP_007379442.1 CDS APECO78_01295 NC_020163.1 284352 284948 D COG4235 Cytochrome c biogenesis factor; formate-dependent nitrite reductase complex subunit NrfG 284352..284948 Escherichia coli APEC O78 14480244 YP_007379443.1 CDS APECO78_01300 NC_020163.1 285290 286603 D COG1301 Na+/H+-dicarboxylate symporters; glutamate/aspartate:proton symporter 285290..286603 Escherichia coli APEC O78 14480245 YP_007379444.1 CDS APECO78_01305 NC_020163.1 286681 287370 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(286681..287370) Escherichia coli APEC O78 14480246 YP_007379445.1 CDS APECO78_01310 NC_020163.1 287464 289143 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-H subunit alpha complement(287464..289143) Escherichia coli APEC O78 14480247 YP_007379446.1 CDS APECO78_01315 NC_020163.1 289192 289611 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-H, selenopolypeptide subunit complement(289192..289611) Escherichia coli APEC O78 14480248 YP_007379447.1 CDS APECO78_01320 NC_020163.1 289809 291275 R COG1538 Outer membrane protein; outer membrane efflux protein MdtP complement(289809..291275) Escherichia coli APEC O78 14480249 YP_007379448.1 CDS APECO78_01325 NC_020163.1 291272 293323 R COG1289 Predicted membrane protein; multidrug efflux system protein MdtO complement(291272..293323) Escherichia coli APEC O78 14480250 YP_007379449.1 CDS APECO78_01330 NC_020163.1 293323 294354 R COG1566 Multidrug resistance efflux pump; multidrug resistance protein MdtN complement(293323..294354) Escherichia coli APEC O78 14480251 YP_007379450.1 CDS APECO78_01335 NC_020163.1 294373 294648 R formate dehydrogenase H complement(294373..294648) Escherichia coli APEC O78 14480252 YP_007379451.1 CDS APECO78_01340 NC_020163.1 294857 296842 R COG2015 Alkyl sulfatase and related hydrolases; hypothetical protein complement(294857..296842) Escherichia coli APEC O78 14480253 YP_007379452.1 CDS APECO78_01345 NC_020163.1 297115 298044 R COG1940 Transcriptional regulator/sugar kinase; D-allose kinase complement(297115..298044) Escherichia coli APEC O78 14480254 YP_007379453.1 CDS APECO78_01350 NC_020163.1 298028 298723 R COG0036 Pentose-5-phosphate-3-epimerase; allulose-6-phosphate 3-epimerase complement(298028..298723) Escherichia coli APEC O78 14480255 YP_007379454.1 CDS APECO78_01355 NC_020163.1 298734 299714 R COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; D-allose transporter subunit complement(298734..299714) Escherichia coli APEC O78 14480256 YP_007379455.1 CDS APECO78_01360 NC_020163.1 299693 301225 R COG1129 ABC-type sugar transport system, ATPase component; D-allose transporter ATP-binding protein complement(299693..301225) Escherichia coli APEC O78 14480257 YP_007379456.1 CDS APECO78_01365 NC_020163.1 301352 302287 R COG1879 ABC-type sugar transport system, periplasmic component; D-allose transporter subunit complement(301352..302287) Escherichia coli APEC O78 14480258 YP_007379457.1 CDS APECO78_01370 NC_020163.1 302346 303236 R COG1737 Transcriptional regulators; DNA-binding transcriptional repressor RpiR complement(302346..303236) Escherichia coli APEC O78 14480259 YP_007379458.1 CDS APECO78_01375 NC_020163.1 303596 304045 D COG0698 Ribose 5-phosphate isomerase RpiB; ribose-5-phosphate isomerase B 303596..304045 Escherichia coli APEC O78 14480260 YP_007379459.1 CDS APECO78_01380 NC_020163.1 304114 304443 D hypothetical protein 304114..304443 Escherichia coli APEC O78 14480261 YP_007379460.1 CDS phnP NC_020163.1 304590 305348 R COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I; carbon-phosphorus lyase complex accessory protein complement(304590..305348) Escherichia coli APEC O78 14480262 YP_007379461.1 CDS APECO78_01390 NC_020163.1 305350 305784 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; aminoalkylphosphonic acid N-acetyltransferase complement(305350..305784) Escherichia coli APEC O78 14480263 YP_007379462.1 CDS APECO78_01395 NC_020163.1 305771 306328 R COG3709 Uncharacterized component of phosphonate metabolism; ribose 1,5-bisphosphokinase complement(305771..306328) Escherichia coli APEC O78 14480264 YP_007379463.1 CDS APECO78_01400 NC_020163.1 306328 307464 R COG3454 Metal-dependent hydrolase involved in phosphonate metabolism; phosphonate metabolism protein PhnM complement(306328..307464) Escherichia coli APEC O78 14480265 YP_007379464.1 CDS APECO78_01405 NC_020163.1 307461 308141 R COG4778 ABC-type phosphonate transport system, ATPase component; phosphonate transport ATP-binding protein complement(307461..308141) Escherichia coli APEC O78 14480266 YP_007379465.1 CDS phnK NC_020163.1 308318 309076 R COG4107 ABC-type phosphonate transport system, ATPase component; phosphonate C-P lyase system protein PhnK complement(308318..309076) Escherichia coli APEC O78 14480267 YP_007379466.1 CDS APECO78_01415 NC_020163.1 309073 309918 R COG3627 Uncharacterized enzyme of phosphonate metabolism; hypothetical protein complement(309073..309918) Escherichia coli APEC O78 14480268 YP_007379467.1 CDS APECO78_01420 NC_020163.1 309911 310975 R COG3626 Uncharacterized enzyme of phosphonate metabolism; carbon-phosphorus lyase complex subunit PhnI complement(309911..310975) Escherichia coli APEC O78 14480269 YP_007379468.1 CDS phnH NC_020163.1 310975 311559 R COG3625 Uncharacterized enzyme of phosphonate metabolism; carbon-phosphorus lyase complex subunit complement(310975..311559) Escherichia coli APEC O78 14480270 YP_007379469.1 CDS APECO78_01430 NC_020163.1 311556 312008 R COG3624 Uncharacterized enzyme of phosphonate metabolism; carbon-phosphorus lyase complex subunit PhnG complement(311556..312008) Escherichia coli APEC O78 14480271 YP_007379470.1 CDS APECO78_01435 NC_020163.1 312009 312734 R COG2188 Transcriptional regulators; phosphonate metabolism transcriptional regulator PhnF complement(312009..312734) Escherichia coli APEC O78 14480272 YP_007379471.1 CDS APECO78_01440 NC_020163.1 312755 313534 R COG3639 ABC-type phosphate/phosphonate transport system, permease component; phosphonate ABC transporter permease complement(312755..313534) Escherichia coli APEC O78 14480273 YP_007379472.1 CDS APECO78_01445 NC_020163.1 313596 314612 R COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component; alkylphosphonate ABC transporter periplasmic phosphonates-binding protein complement(313596..314612) Escherichia coli APEC O78 14480274 YP_007379473.1 CDS APECO78_01450 NC_020163.1 314637 315425 R COG3638 ABC-type phosphate/phosphonate transport system, ATPase component; phosphonate ABC transporter ATPase complement(314637..315425) Escherichia coli APEC O78 14480275 YP_007379474.1 CDS APECO78_01455 NC_020163.1 315558 316001 R COG2764 Uncharacterized protein conserved in bacteria; hypothetical protein complement(315558..316001) Escherichia coli APEC O78 14480276 YP_007379475.1 CDS APECO78_01460 NC_020163.1 316161 316496 R COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; PhnA protein complement(316161..316496) Escherichia coli APEC O78 14480277 YP_007379476.1 CDS APECO78_01465 NC_020163.1 316898 319126 D COG0699 Predicted GTPases (dynamin-related); hypothetical protein 316898..319126 Escherichia coli APEC O78 14480278 YP_007379477.1 CDS APECO78_01470 NC_020163.1 319123 320001 D hypothetical protein 319123..320001 Escherichia coli APEC O78 14480279 YP_007379478.1 CDS APECO78_01475 NC_020163.1 320265 321767 D COG0477 Permeases of the major facilitator superfamily; proline/glycine betaine transporter 320265..321767 Escherichia coli APEC O78 14480280 YP_007379479.1 CDS APECO78_01480 NC_020163.1 321879 321968 D regulator of BasS activity, membrane protein 321879..321968 Escherichia coli APEC O78 14480281 YP_007379480.1 CDS APECO78_01485 NC_020163.1 321944 323035 R COG0642 Signal transduction histidine kinase; sensor protein BasS/PmrB complement(321944..323035) Escherichia coli APEC O78 14480282 YP_007379481.1 CDS APECO78_01490 NC_020163.1 323045 323713 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator complement(323045..323713) Escherichia coli APEC O78 14480283 YP_007379482.1 CDS APECO78_01495 NC_020163.1 323710 325353 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; Putative sulfatase complement(323710..325353) Escherichia coli APEC O78 14480284 YP_007379483.1 CDS APECO78_01500 NC_020163.1 325457 326794 R COG0531 Amino acid transporters; arginine:agmatin antiporter complement(325457..326794) Escherichia coli APEC O78 14480285 YP_007379484.1 CDS APECO78_01505 NC_020163.1 326931 327692 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator AdiY complement(326931..327692) Escherichia coli APEC O78 14480286 YP_007379485.1 CDS APECO78_01510 NC_020163.1 328017 330287 R COG1982 Arginine/lysine/ornithine decarboxylases; arginine decarboxylase complement(328017..330287) Escherichia coli APEC O78 14480287 YP_007379486.1 CDS APECO78_01515 NC_020163.1 330483 331391 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator MelR complement(330483..331391) Escherichia coli APEC O78 14480288 YP_007379487.1 CDS APECO78_01520 NC_020163.1 331423 331584 D hypothetical protein 331423..331584 Escherichia coli APEC O78 14480289 YP_007379488.1 CDS APECO78_01525 NC_020163.1 331674 333029 D COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; alpha-galactosidase 331674..333029 Escherichia coli APEC O78 14480290 YP_007379489.1 CDS APECO78_01530 NC_020163.1 333132 334553 D COG2211 Na+/melibiose symporter and related transporters; melibiose:sodium symporter 333132..334553 Escherichia coli APEC O78 14480291 YP_007379490.1 CDS APECO78_01535 NC_020163.1 334692 335321 R COG3647 Predicted membrane protein; hypothetical protein complement(334692..335321) Escherichia coli APEC O78 14480292 YP_007379491.1 CDS APECO78_01540 NC_020163.1 335444 337090 R COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase FumB complement(335444..337090) Escherichia coli APEC O78 14480293 YP_007379492.1 CDS APECO78_01545 NC_020163.1 337168 338508 R COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter complement(337168..338508) Escherichia coli APEC O78 14480294 YP_007379493.1 CDS APECO78_01550 NC_020163.1 339079 339798 R COG4565 Response regulator of citrate/malate metabolism; DNA-binding transcriptional activator DcuR complement(339079..339798) Escherichia coli APEC O78 14480295 YP_007379494.1 CDS APECO78_01555 NC_020163.1 339795 341426 R COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensory histidine kinase DcuS complement(339795..341426) Escherichia coli APEC O78 14480296 YP_007379495.1 CDS APECO78_01560 NC_020163.1 341607 341837 D COG3592 Uncharacterized conserved protein; hypothetical protein 341607..341837 Escherichia coli APEC O78 14480297 YP_007379496.1 CDS APECO78_01565 NC_020163.1 341849 342121 D COG2388 Predicted acetyltransferase; acyltransferase 341849..342121 Escherichia coli APEC O78 14480298 YP_007379497.1 CDS APECO78_01570 NC_020163.1 342348 342644 D hypothetical protein 342348..342644 Escherichia coli APEC O78 14480299 YP_007379498.1 CDS APECO78_01575 NC_020163.1 342672 342845 D hypothetical protein 342672..342845 Escherichia coli APEC O78 14480300 YP_007379499.1 CDS APECO78_01580 NC_020163.1 342964 344481 R COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA ligase complement(342964..344481) Escherichia coli APEC O78 14480301 YP_007379500.1 CDS APECO78_01585 NC_020163.1 344718 346175 R COG3104 Dipeptide/tripeptide permease; transporter complement(344718..346175) Escherichia coli APEC O78 14480302 YP_007379501.1 CDS APECO78_01590 NC_020163.1 346234 348381 R COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase CadA complement(346234..348381) Escherichia coli APEC O78 14480303 YP_007379502.1 CDS APECO78_01595 NC_020163.1 348461 349795 R COG0531 Amino acid transporters; lysine/cadaverine antiporter complement(348461..349795) Escherichia coli APEC O78 14480304 YP_007379503.1 CDS APECO78_01600 NC_020163.1 350161 351141 R COG0457 FOG: TPR repeat; DNA-binding transcriptional activator CadC complement(350161..351141) Escherichia coli APEC O78 14480305 YP_007379504.1 CDS APECO78_01605 NC_020163.1 351192 351698 R COG3710 DNA-binding winged-HTH domains; DNA-binding transcriptional activator CadC complement(351192..351698) Escherichia coli APEC O78 14480306 YP_007379505.1 CDS APECO78_01610 NC_020163.1 352488 352607 D hypothetical protein 352488..352607 Escherichia coli APEC O78 14484585 YP_007379506.1 CDS APECO78_01615 NC_020163.1 352497 353072 R COG1309 Transcriptional regulator; transcriptional regulator complement(352497..353072) Escherichia coli APEC O78 14480308 YP_007379507.1 CDS dipZ NC_020163.1 353109 354806 R COG4232 Thiol:disulfide interchange protein; thiol:disulfide interchange protein precursor complement(353109..354806) Escherichia coli APEC O78 14480309 YP_007379508.1 CDS APECO78_01625 NC_020163.1 354782 355120 R COG1324 Uncharacterized protein involved in tolerance to divalent cations; divalent-cation tolerance protein CutA complement(354782..355120) Escherichia coli APEC O78 14480310 YP_007379509.1 CDS APECO78_01630 NC_020163.1 355236 356537 R COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter complement(355236..356537) Escherichia coli APEC O78 14480311 YP_007379510.1 CDS APECO78_01635 NC_020163.1 356655 358091 R COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase complement(356655..358091) Escherichia coli APEC O78 14480312 YP_007379511.1 CDS APECO78_01640 NC_020163.1 358428 358904 D COG3030 Protein affecting phage T7 exclusion by the F plasmid; phage T7 F exclusion suppressor FxsA 358428..358904 Escherichia coli APEC O78 14480313 YP_007379512.1 CDS APECO78_01645 NC_020163.1 358920 360176 R COG0531 Amino acid transporters; transporter complement(358920..360176) Escherichia coli APEC O78 14480314 YP_007379513.1 CDS APECO78_01650 NC_020163.1 360452 360745 D COG0234 Co-chaperonin GroES (HSP10); co-chaperonin GroES 360452..360745 Escherichia coli APEC O78 14480315 YP_007379514.1 CDS APECO78_01655 NC_020163.1 360789 362435 D COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL 360789..362435 Escherichia coli APEC O78 14480316 YP_007379515.1 CDS APECO78_01660 NC_020163.1 362573 362926 D hypothetical protein 362573..362926 Escherichia coli APEC O78 14480317 YP_007379516.1 CDS APECO78_01665 NC_020163.1 363119 363988 R COG5257 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase); hypothetical protein complement(363119..363988) Escherichia coli APEC O78 14480318 YP_007379517.1 CDS APECO78_01670 NC_020163.1 364215 364352 R hypothetical protein complement(364215..364352) Escherichia coli APEC O78 14480319 YP_007379518.1 CDS APECO78_01675 NC_020163.1 364383 365411 R COG1509 Lysine 2,3-aminomutase; KamA family protein complement(364383..365411) Escherichia coli APEC O78 14480320 YP_007379519.1 CDS APECO78_01680 NC_020163.1 365453 366019 D COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 365453..366019 Escherichia coli APEC O78 14480321 YP_007379520.1 CDS APECO78_01685 NC_020163.1 366071 366196 D entericidin A 366071..366196 Escherichia coli APEC O78 14480322 YP_007379521.1 CDS APECO78_01690 NC_020163.1 366307 366453 D COG5510 Predicted small secreted protein; entericidin B membrane lipoprotein 366307..366453 Escherichia coli APEC O78 14480323 YP_007379522.1 CDS APECO78_01695 NC_020163.1 366628 366945 D COG2076 Membrane transporters of cations and cationic drugs; small multidrug resistance protein 366628..366945 Escherichia coli APEC O78 14480324 YP_007379523.1 CDS APECO78_01700 NC_020163.1 366942 367475 R COG3040 Bacterial lipocalin; outer membrane lipoprotein Blc complement(366942..367475) Escherichia coli APEC O78 14480325 YP_007379524.1 CDS ampC NC_020163.1 367564 368697 R COG1680 Beta-lactamase class C and other penicillin binding proteins; beta-lactamase/D-alanine carboxypeptidase complement(367564..368697) Escherichia coli APEC O78 14480326 YP_007379525.1 CDS APECO78_01710 NC_020163.1 368760 369119 R COG3080 Fumarate reductase subunit D; fumarate reductase subunit D complement(368760..369119) Escherichia coli APEC O78 14480327 YP_007379526.1 CDS APECO78_01715 NC_020163.1 369130 369525 R COG3029 Fumarate reductase subunit C; fumarate reductase subunit C complement(369130..369525) Escherichia coli APEC O78 14480328 YP_007379527.1 CDS APECO78_01720 NC_020163.1 369536 370270 R COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit complement(369536..370270) Escherichia coli APEC O78 14480329 YP_007379528.1 CDS APECO78_01725 NC_020163.1 370263 372071 R COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit complement(370263..372071) Escherichia coli APEC O78 14480330 YP_007379529.1 CDS APECO78_01730 NC_020163.1 372396 373373 D COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II); EF-P-lysine aminoacylase 372396..373373 Escherichia coli APEC O78 14480331 YP_007379530.1 CDS APECO78_01735 NC_020163.1 373592 375094 D COG0531 Amino acid transporters; YjeM APC transporter 373592..375094 Escherichia coli APEC O78 14480332 YP_007379531.1 CDS APECO78_01740 NC_020163.1 375245 378568 R COG3264 Small-conductance mechanosensitive channel; mechanosensitive channel protein complement(375245..378568) Escherichia coli APEC O78 14480333 YP_007379532.1 CDS APECO78_01745 NC_020163.1 378590 379558 R COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase complement(378590..379558) Escherichia coli APEC O78 14480334 YP_007379533.1 CDS APECO78_01750 NC_020163.1 379655 380707 R COG1162 Predicted GTPases; GTPase RsgA complement(379655..380707) Escherichia coli APEC O78 14480335 YP_007379534.1 CDS APECO78_01755 NC_020163.1 380802 381347 D COG1949 Oligoribonuclease (3'->5' exoribonuclease); oligoribonuclease 380802..381347 Escherichia coli APEC O78 14480336 YP_007379535.1 CDS APECO78_01760 NC_020163.1 382126 383265 R COG1600 Uncharacterized Fe-S protein; Fe-S electron transport protein complement(382126..383265) Escherichia coli APEC O78 14484588 YP_007379536.1 CDS APECO78_01765 NC_020163.1 383264 384811 D COG0062 Uncharacterized conserved protein; carbohydrate kinase 383264..384811 Escherichia coli APEC O78 14480338 YP_007379537.1 CDS APECO78_01770 NC_020163.1 384783 385244 D COG0802 Predicted ATPase or kinase; ADP-binding protein 384783..385244 Escherichia coli APEC O78 14480339 YP_007379538.1 CDS APECO78_01775 NC_020163.1 385263 386600 D COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase II 385263..386600 Escherichia coli APEC O78 14480340 YP_007379539.1 CDS APECO78_01780 NC_020163.1 386610 388457 D COG0323 DNA mismatch repair enzyme (predicted ATPase); MutL, subunit of MutHLS complex, methyl-directed mismatch repair 386610..388457 Escherichia coli APEC O78 14480341 YP_007379540.1 CDS APECO78_01785 NC_020163.1 388450 389400 D COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 388450..389400 Escherichia coli APEC O78 14480342 YP_007379541.1 CDS APECO78_01790 NC_020163.1 389486 389794 D COG1923 Uncharacterized host factor I protein; RNA-binding protein Hfq 389486..389794 Escherichia coli APEC O78 14480343 YP_007379542.1 CDS APECO78_01795 NC_020163.1 389871 391151 D COG2262 GTPases; GTPase HflX 389871..391151 Escherichia coli APEC O78 14480344 YP_007379543.1 CDS APECO78_01800 NC_020163.1 391237 392496 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflK 391237..392496 Escherichia coli APEC O78 14480345 YP_007379544.1 CDS APECO78_01805 NC_020163.1 392499 393503 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflC 392499..393503 Escherichia coli APEC O78 14480346 YP_007379545.1 CDS APECO78_01810 NC_020163.1 393585 393782 D COG3242 Uncharacterized protein conserved in bacteria; inner membrane protein 393585..393782 Escherichia coli APEC O78 14480347 YP_007379546.1 CDS APECO78_01815 NC_020163.1 393886 395184 D COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 393886..395184 Escherichia coli APEC O78 14480348 YP_007379547.1 CDS APECO78_01820 NC_020163.1 395389 395814 D COG1959 Predicted transcriptional regulator; transcriptional repressor NsrR 395389..395814 Escherichia coli APEC O78 14480349 YP_007379548.1 CDS APECO78_01825 NC_020163.1 395853 398294 D COG0557 Exoribonuclease R; exoribonuclease R 395853..398294 Escherichia coli APEC O78 14480350 YP_007379549.1 CDS APECO78_01830 NC_020163.1 398474 399205 D COG0566 rRNA methylases; 23S rRNA (guanosine-2'-O-)-methyltransferase 398474..399205 Escherichia coli APEC O78 14480351 YP_007379550.1 CDS APECO78_01835 NC_020163.1 399331 399732 D COG3789 Uncharacterized protein conserved in bacteria; cytoplasmic protein 399331..399732 Escherichia coli APEC O78 14480352 YP_007379551.1 CDS APECO78_01840 NC_020163.1 399751 400449 D COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; transcriptional regulator effector protein 399751..400449 Escherichia coli APEC O78 14480353 YP_007379552.1 CDS APECO78_01845 NC_020163.1 400500 401159 D hypothetical protein 400500..401159 Escherichia coli APEC O78 14480354 YP_007379553.1 CDS APECO78_01850 NC_020163.1 401177 401575 D COG3766 Predicted membrane protein; hypothetical protein 401177..401575 Escherichia coli APEC O78 14480355 YP_007379554.1 CDS APECO78_01855 NC_020163.1 401585 402223 D hypothetical protein 401585..402223 Escherichia coli APEC O78 14480356 YP_007379555.1 CDS APECO78_01860 NC_020163.1 402226 403389 D COG0754 Glutathionylspermidine synthase; synthetase/amidase 402226..403389 Escherichia coli APEC O78 14480357 YP_007379556.1 CDS APECO78_01865 NC_020163.1 403473 405098 D COG1960 Acyl-CoA dehydrogenases; isovaleryl CoA dehydrogenase 403473..405098 Escherichia coli APEC O78 14480358 YP_007379557.1 CDS APECO78_01870 NC_020163.1 405215 405490 R hypothetical protein complement(405215..405490) Escherichia coli APEC O78 14480359 YP_007379558.1 CDS APECO78_01875 NC_020163.1 405639 405968 R biofilm stress and motility protein A complement(405639..405968) Escherichia coli APEC O78 14480360 YP_007379559.1 CDS APECO78_01880 NC_020163.1 406150 406899 D COG1073 Hydrolases of the alpha/beta superfamily; esterase 406150..406899 Escherichia coli APEC O78 14480361 YP_007379560.1 CDS APECO78_01885 NC_020163.1 406896 407651 R COG1349 Transcriptional regulators of sugar metabolism; transcriptional repressor UlaR complement(406896..407651) Escherichia coli APEC O78 14480362 YP_007379561.1 CDS APECO78_01890 NC_020163.1 407759 408823 R COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; L-ascorbate 6-phosphate lactonase complement(407759..408823) Escherichia coli APEC O78 14480363 YP_007379562.1 CDS APECO78_01895 NC_020163.1 409178 410575 D COG3037 Uncharacterized protein conserved in bacteria; PTS system ascorbate-specific transporter subunit IIC 409178..410575 Escherichia coli APEC O78 14480364 YP_007379563.1 CDS APECO78_01900 NC_020163.1 410591 410896 D COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system L-ascorbate-specific transporter subunit IIB 410591..410896 Escherichia coli APEC O78 14480365 YP_007379564.1 CDS APECO78_01905 NC_020163.1 410906 411370 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system L-ascorbate-specific transporter subunit IIA 410906..411370 Escherichia coli APEC O78 14480366 YP_007379565.1 CDS ulaD NC_020163.1 411384 412034 D COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 411384..412034 Escherichia coli APEC O78 14480367 YP_007379566.1 CDS APECO78_01915 NC_020163.1 412044 412898 D COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 412044..412898 Escherichia coli APEC O78 14480368 YP_007379567.1 CDS sgaE NC_020163.1 412898 413584 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 412898..413584 Escherichia coli APEC O78 14480369 YP_007379568.1 CDS APECO78_01925 NC_020163.1 413713 413988 R hypothetical protein complement(413713..413988) Escherichia coli APEC O78 14480370 YP_007379569.1 CDS rpsF NC_020163.1 414315 414710 D COG0360 Ribosomal protein S6; 30S ribosomal protein S6 414315..414710 Escherichia coli APEC O78 14480371 YP_007379570.1 CDS APECO78_01935 NC_020163.1 414717 415031 D COG2965 Primosomal replication protein N; primosomal replication protein N 414717..415031 Escherichia coli APEC O78 14480372 YP_007379571.1 CDS APECO78_01940 NC_020163.1 415036 415263 D COG0238 Ribosomal protein S18; 30S ribosomal protein S18 415036..415263 Escherichia coli APEC O78 14480373 YP_007379572.1 CDS APECO78_01945 NC_020163.1 415305 415754 D COG0359 Ribosomal protein L9; 50S ribosomal protein L9 415305..415754 Escherichia coli APEC O78 14480374 YP_007379573.1 CDS APECO78_01950 NC_020163.1 415866 416837 R COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; hypothetical protein complement(415866..416837) Escherichia coli APEC O78 14480375 YP_007379574.1 CDS APECO78_01955 NC_020163.1 416890 418191 R COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; transporter complement(416890..418191) Escherichia coli APEC O78 14480376 YP_007379575.1 CDS APECO78_01960 NC_020163.1 418234 418734 R COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; TRAP dicarboxylate transporter subunit DctQ complement(418234..418734) Escherichia coli APEC O78 14480377 YP_007379576.1 CDS APECO78_01965 NC_020163.1 418731 420812 R COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; hypothetical protein complement(418731..420812) Escherichia coli APEC O78 14480378 YP_007379577.1 CDS APECO78_01970 NC_020163.1 420809 422350 R COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; hypothetical protein complement(420809..422350) Escherichia coli APEC O78 14480379 YP_007379578.1 CDS APECO78_01975 NC_020163.1 422360 423136 R COG1024 Enoyl-CoA hydratase/carnithine racemase; hypothetical protein complement(422360..423136) Escherichia coli APEC O78 14480380 YP_007379579.1 CDS APECO78_01980 NC_020163.1 423146 423988 R COG1082 Sugar phosphate isomerases/epimerases; hypothetical protein complement(423146..423988) Escherichia coli APEC O78 14480381 YP_007379580.1 CDS APECO78_01985 NC_020163.1 423998 424789 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); hypothetical protein complement(423998..424789) Escherichia coli APEC O78 14480382 YP_007379581.1 CDS APECO78_01990 NC_020163.1 425002 425649 D COG1309 Transcriptional regulator; putative transcriptional regulator 425002..425649 Escherichia coli APEC O78 14480383 YP_007379582.1 CDS APECO78_01995 NC_020163.1 425633 426271 R COG3061 Cell envelope opacity-associated protein A; cell envelope opacity-associated protein complement(425633..426271) Escherichia coli APEC O78 14480384 YP_007379583.1 CDS APECO78_02000 NC_020163.1 426490 427110 D COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; peptidyl-prolyl cis-trans isomerase 426490..427110 Escherichia coli APEC O78 14480385 YP_007379584.1 CDS APECO78_02005 NC_020163.1 427419 428822 D COG1113 Gamma-aminobutyrate permease and related permeases; D-alanine/D-serine/glycine permease 427419..428822 Escherichia coli APEC O78 14480386 YP_007379585.1 CDS APECO78_02010 NC_020163.1 428863 429096 D hypothetical protein 428863..429096 Escherichia coli APEC O78 14480387 YP_007379586.1 CDS APECO78_02015 NC_020163.1 429089 429523 D hypothetical protein 429089..429523 Escherichia coli APEC O78 14480388 YP_007379587.1 CDS APECO78_02020 NC_020163.1 429667 430689 D hypothetical protein 429667..430689 Escherichia coli APEC O78 14480389 YP_007379588.1 CDS APECO78_02025 NC_020163.1 430936 431598 R COG2846 Regulator of cell morphogenesis and NO signaling; iron-sulfur cluster repair di-iron protein complement(430936..431598) Escherichia coli APEC O78 14480390 YP_007379589.1 CDS APECO78_02030 NC_020163.1 431706 432671 R COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein complement(431706..432671) Escherichia coli APEC O78 14480391 YP_007379590.1 CDS APECO78_02035 NC_020163.1 432779 433639 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; NAD(P)H:quinone oxidoreductase complement(432779..433639) Escherichia coli APEC O78 14480392 YP_007379591.1 CDS APECO78_02040 NC_020163.1 433728 434108 D COG1733 Predicted transcriptional regulators; hypothetical protein 433728..434108 Escherichia coli APEC O78 14480393 YP_007379592.1 CDS cpdB NC_020163.1 434237 436180 R COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein complement(434237..436180) Escherichia coli APEC O78 14480394 YP_007379593.1 CDS APECO78_02050 NC_020163.1 436370 437110 D COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; adenosine-3'(2'),5'-bisphosphate nucleotidase 436370..437110 Escherichia coli APEC O78 14480395 YP_007379594.1 CDS APECO78_02055 NC_020163.1 437100 437657 R COG3054 Predicted transcriptional regulator; hypothetical protein complement(437100..437657) Escherichia coli APEC O78 14480396 YP_007379595.1 CDS APECO78_02060 NC_020163.1 437982 438188 D COG1117 ABC-type phosphate transport system, ATPase component; hypothetical protein 437982..438188 Escherichia coli APEC O78 14480397 YP_007379596.1 CDS APECO78_02065 NC_020163.1 438250 439593 R COG1253 Hemolysins and related proteins containing CBS domains; inner membrane protein complement(438250..439593) Escherichia coli APEC O78 14480398 YP_007379597.1 CDS APECO78_02070 NC_020163.1 439916 440554 R COG0225 Peptide methionine sulfoxide reductase; Methionine sulfoxide reductase A complement(439916..440554) Escherichia coli APEC O78 14480399 YP_007379598.1 CDS APECO78_02075 NC_020163.1 440662 440790 D COG1131 ABC-type multidrug transport system, ATPase component; hypothetical protein 440662..440790 Escherichia coli APEC O78 14480400 YP_007379599.1 CDS APECO78_02080 NC_020163.1 440760 442493 D COG0729 Outer membrane protein; surface antigen (D15) 440760..442493 Escherichia coli APEC O78 14480401 YP_007379600.1 CDS APECO78_02085 NC_020163.1 442490 446269 D COG2911 Uncharacterized protein conserved in bacteria; hypothetical protein 442490..446269 Escherichia coli APEC O78 14480402 YP_007379601.1 CDS APECO78_02090 NC_020163.1 446272 446613 D COG2105 Uncharacterized conserved protein; hypothetical protein 446272..446613 Escherichia coli APEC O78 14480403 YP_007379602.1 CDS APECO78_02095 NC_020163.1 446826 447077 D COG2336 Growth regulator; antitoxin ChpS 446826..447077 Escherichia coli APEC O78 14480404 YP_007379603.1 CDS APECO78_02100 NC_020163.1 447071 447421 D COG2337 Growth inhibitor; toxin ChpB 447071..447421 Escherichia coli APEC O78 14480405 YP_007379604.1 CDS APECO78_02105 NC_020163.1 447501 448031 R COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase complement(447501..448031) Escherichia coli APEC O78 14480406 YP_007379605.1 CDS APECO78_02110 NC_020163.1 448341 449297 D COG1879 ABC-type sugar transport system, periplasmic component; sugar transporter subunit 448341..449297 Escherichia coli APEC O78 14480407 YP_007379606.1 CDS APECO78_02115 NC_020163.1 449607 451109 D COG1129 ABC-type sugar transport system, ATPase component; putative sugar transporter subunit 449607..451109 Escherichia coli APEC O78 14480408 YP_007379607.1 CDS APECO78_02120 NC_020163.1 451123 452145 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; putative sugar transporter subunit 451123..452145 Escherichia coli APEC O78 14480409 YP_007379608.1 CDS APECO78_02125 NC_020163.1 452132 453127 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; inner membrane ABC transporter permease YjfF 452132..453127 Escherichia coli APEC O78 14480410 YP_007379609.1 CDS APECO78_02130 NC_020163.1 453160 454158 R COG0158 Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase complement(453160..454158) Escherichia coli APEC O78 14480411 YP_007379610.1 CDS APECO78_02135 NC_020163.1 454334 455707 D COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelat e ligase 454334..455707 Escherichia coli APEC O78 14480412 YP_007379611.1 CDS APECO78_02140 NC_020163.1 455863 456414 R COG3028 Uncharacterized protein conserved in bacteria; hypothetical protein complement(455863..456414) Escherichia coli APEC O78 14480413 YP_007379612.1 CDS APECO78_02145 NC_020163.1 456520 457860 D COG0312 Predicted Zn-dependent proteases and their inactivated homologs; peptidase PmbA 456520..457860 Escherichia coli APEC O78 14480414 YP_007379613.1 CDS APECO78_02150 NC_020163.1 457915 458301 D COG3783 Soluble cytochrome b562; cytochrome b562 457915..458301 Escherichia coli APEC O78 14480415 YP_007379614.1 CDS nrdG NC_020163.1 458346 458810 R COG0602 Organic radical activating enzymes; anaerobic ribonucleotide reductase-activating protein complement(458346..458810) Escherichia coli APEC O78 14480416 YP_007379615.1 CDS APECO78_02160 NC_020163.1 458969 461107 R COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; anaerobic ribonucleoside triphosphate reductase complement(458969..461107) Escherichia coli APEC O78 14480417 YP_007379616.1 CDS APECO78_02165 NC_020163.1 461501 463156 R COG0366 Glycosidases; trehalose-6-phosphate hydrolase complement(461501..463156) Escherichia coli APEC O78 14480418 YP_007379617.1 CDS APECO78_02170 NC_020163.1 463206 464624 R COG1264 Phosphotransferase system IIB components; PTS system trehalose(maltose)-specific transporter subunits IIBC complement(463206..464624) Escherichia coli APEC O78 14480419 YP_007379618.1 CDS APECO78_02175 NC_020163.1 464746 465693 R COG1609 Transcriptional regulators; trehalose repressor complement(464746..465693) Escherichia coli APEC O78 14480420 YP_007379619.1 CDS APECO78_02180 NC_020163.1 466072 468768 D COG0474 Cation transport ATPase; magnesium-transporting ATPase MgtA 466072..468768 Escherichia coli APEC O78 14480421 YP_007379620.1 CDS APECO78_02185 NC_020163.1 468974 469360 R COG0251 Putative translation initiation inhibitor, yjgF family; hypothetical protein complement(468974..469360) Escherichia coli APEC O78 14480422 YP_007379621.1 CDS APECO78_02190 NC_020163.1 469433 469894 R COG1781 Aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase regulatory subunit complement(469433..469894) Escherichia coli APEC O78 14480423 YP_007379622.1 CDS APECO78_02195 NC_020163.1 469907 470842 R COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit complement(469907..470842) Escherichia coli APEC O78 14480424 YP_007379623.1 CDS APECO78_02200 NC_020163.1 470846 471037 R pyrBI operon leader peptide complement(470846..471037) Escherichia coli APEC O78 14480425 YP_007379624.1 CDS APECO78_02205 NC_020163.1 471019 471156 R hypothetical protein complement(471019..471156) Escherichia coli APEC O78 14480426 YP_007379625.1 CDS APECO78_02210 NC_020163.1 471261 471656 R COG0251 Putative translation initiation inhibitor, yjgF family; mRNA endoribonuclease complement(471261..471656) Escherichia coli APEC O78 14480427 YP_007379626.1 CDS APECO78_02215 NC_020163.1 471787 472461 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase complement(471787..472461) Escherichia coli APEC O78 14480428 YP_007379627.1 CDS APECO78_02220 NC_020163.1 472532 473125 D COG1309 Transcriptional regulator; TetR family transcriptional regulator 472532..473125 Escherichia coli APEC O78 14480429 YP_007379628.1 CDS APECO78_02225 NC_020163.1 473270 473722 D COG2731 Beta-galactosidase, beta subunit; hypothetical protein 473270..473722 Escherichia coli APEC O78 14480430 YP_007379629.1 CDS APECO78_02230 NC_020163.1 473845 474423 D hypothetical protein 473845..474423 Escherichia coli APEC O78 14480431 YP_007379630.1 CDS APECO78_02235 NC_020163.1 474424 475443 D hypothetical protein 474424..475443 Escherichia coli APEC O78 14480432 YP_007379631.1 CDS APECO78_02240 NC_020163.1 475501 476505 R COG0078 Ornithine carbamoyltransferase; ornithine carbamoyltransferase subunit I complement(475501..476505) Escherichia coli APEC O78 14480433 YP_007379632.1 CDS APECO78_02245 NC_020163.1 476667 477083 D COG3076 Uncharacterized protein conserved in bacteria; RNase E inhibitor protein 476667..477083 Escherichia coli APEC O78 14480434 YP_007379633.1 CDS APECO78_02250 NC_020163.1 477130 477633 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase complement(477130..477633) Escherichia coli APEC O78 14480435 YP_007379634.1 CDS APECO78_02255 NC_020163.1 477826 479022 D COG4269 Predicted membrane protein; hypothetical protein 477826..479022 Escherichia coli APEC O78 14480436 YP_007379635.1 CDS valS NC_020163.1 479076 481931 R COG0525 Valyl-tRNA synthetase; valyl-tRNA ligase complement(479076..481931) Escherichia coli APEC O78 14480437 YP_007379636.1 CDS APECO78_02265 NC_020163.1 481931 482374 R COG2927 DNA polymerase III, chi subunit; DNA polymerase III subunit chi complement(481931..482374) Escherichia coli APEC O78 14480438 YP_007379637.1 CDS APECO78_02270 NC_020163.1 482635 484146 R COG0260 Leucyl aminopeptidase; multifunctional aminopeptidase A complement(482635..484146) Escherichia coli APEC O78 14480439 YP_007379638.1 CDS APECO78_02275 NC_020163.1 484413 485513 D COG0795 Predicted permeases; lipopolysaccharide ABC transporter permease LptF 484413..485513 Escherichia coli APEC O78 14480440 YP_007379639.1 CDS APECO78_02280 NC_020163.1 485513 486595 D COG0795 Predicted permeases; hypothetical protein 485513..486595 Escherichia coli APEC O78 14480441 YP_007379640.1 CDS APECO78_02285 NC_020163.1 486756 488258 R COG0433 Predicted ATPase; hypothetical protein complement(486756..488258) Escherichia coli APEC O78 14480442 YP_007379641.1 CDS APECO78_02290 NC_020163.1 488336 489334 R COG1609 Transcriptional regulators; L-idonate regulatory protein complement(488336..489334) Escherichia coli APEC O78 14480443 YP_007379642.1 CDS APECO78_02295 NC_020163.1 489401 490720 R COG2610 H+/gluconate symporter and related permeases; Gnt-II system L-idonate transporter IdnT complement(489401..490720) Escherichia coli APEC O78 14480444 YP_007379643.1 CDS APECO78_02300 NC_020163.1 490785 491549 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 5-keto-D-gluconate-5-reductase complement(490785..491549) Escherichia coli APEC O78 14480445 YP_007379644.1 CDS APECO78_02305 NC_020163.1 491573 492604 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-idonate 5-dehydrogenase complement(491573..492604) Escherichia coli APEC O78 14480446 YP_007379645.1 CDS APECO78_02310 NC_020163.1 492821 493384 D COG3265 Gluconate kinase; thermosensitive gluconokinase 492821..493384 Escherichia coli APEC O78 14480447 YP_007379646.1 CDS APECO78_02315 NC_020163.1 493388 494407 R COG1064 Zn-dependent alcohol dehydrogenases; putative zinc-binding dehydrogenase complement(493388..494407) Escherichia coli APEC O78 14480448 YP_007379647.1 CDS APECO78_02320 NC_020163.1 494874 496139 D COG0582 Integrase; phage integrase family site specific recombinase 494874..496139 Escherichia coli APEC O78 14484589 YP_007379648.1 CDS APECO78_02325 NC_020163.1 496540 497655 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative sulfatase complement(496540..497655) Escherichia coli APEC O78 14480450 YP_007379649.1 CDS APECO78_02330 NC_020163.1 497652 497882 R hypothetical protein complement(497652..497882) Escherichia coli APEC O78 14480451 YP_007379650.1 CDS APECO78_02335 NC_020163.1 498146 498367 D COG3436 Transposase and inactivated derivatives; hypothetical protein 498146..498367 Escherichia coli APEC O78 14480452 YP_007379651.1 CDS APECO78_02340 NC_020163.1 498796 498939 D hypothetical protein 498796..498939 Escherichia coli APEC O78 14480453 YP_007379652.1 CDS APECO78_02345 NC_020163.1 498967 500313 R COG3385 FOG: Transposase and inactivated derivatives; putative IS4 transposase; KpLE2 phage-like element complement(498967..500313) Escherichia coli APEC O78 14480454 YP_007379653.1 CDS APECO78_02350 NC_020163.1 500922 502139 D COG0477 Permeases of the major facilitator superfamily; KpLE2 phage-like element transporter 500922..502139 Escherichia coli APEC O78 14480455 YP_007379654.1 CDS APECO78_02355 NC_020163.1 502151 503269 D COG0673 Predicted dehydrogenases and related proteins; KpLE2 phage-like element; predicted oxidoreductase 502151..503269 Escherichia coli APEC O78 14480456 YP_007379655.1 CDS APECO78_02360 NC_020163.1 503312 503437 D small predicted membrane protein 503312..503437 Escherichia coli APEC O78 14480457 YP_007379656.1 CDS APECO78_02365 NC_020163.1 503490 503747 R hypothetical protein complement(503490..503747) Escherichia coli APEC O78 14480458 YP_007379657.1 CDS APECO78_02370 NC_020163.1 503770 503973 D COG0477 Permeases of the major facilitator superfamily; hypothetical protein 503770..503973 Escherichia coli APEC O78 14480459 YP_007379658.1 CDS APECO78_02375 NC_020163.1 504061 504333 D COG2963 Transposase and inactivated derivatives; IS911 protein 504061..504333 Escherichia coli APEC O78 14480460 YP_007379659.1 CDS APECO78_02380 NC_020163.1 504575 504988 D COG2801 Transposase and inactivated derivatives; transposase 504575..504988 Escherichia coli APEC O78 14480461 YP_007379660.1 CDS APECO78_02385 NC_020163.1 504985 505227 D COG2801 Transposase and inactivated derivatives; putative transposase 504985..505227 Escherichia coli APEC O78 14480462 YP_007379661.1 CDS APECO78_02390 NC_020163.1 505154 505567 D COG2085 Predicted dinucleotide-binding enzymes; hypothetical protein 505154..505567 Escherichia coli APEC O78 14480463 YP_007379662.1 CDS APECO78_02395 NC_020163.1 506086 506892 R COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-dicitrate transporter ATP-binding subunit complement(506086..506892) Escherichia coli APEC O78 14480464 YP_007379663.1 CDS APECO78_02400 NC_020163.1 506893 507849 R COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-dicitrate transporter subunit FecD complement(506893..507849) Escherichia coli APEC O78 14480465 YP_007379664.1 CDS APECO78_02405 NC_020163.1 507846 508844 R COG0609 ABC-type Fe3+-siderophore transport system, permease component; fecC complement(507846..508844) Escherichia coli APEC O78 14480466 YP_007379665.1 CDS APECO78_02410 NC_020163.1 508841 509743 R COG4594 ABC-type Fe3+-citrate transport system, periplasmic component; iron-dicitrate transporter subunit complement(508841..509743) Escherichia coli APEC O78 14480467 YP_007379666.1 CDS APECO78_02415 NC_020163.1 509788 512112 R COG4772 Outer membrane receptor for Fe3+-dicitrate; ferric citrate outer membrane transporter complement(509788..512112) Escherichia coli APEC O78 14480468 YP_007379667.1 CDS APECO78_02420 NC_020163.1 512199 513152 R COG3712 Fe2+-dicitrate sensor, membrane component; fec operon regulator FecR complement(512199..513152) Escherichia coli APEC O78 14480469 YP_007379668.1 CDS APECO78_02425 NC_020163.1 513149 513670 R COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; RNA polymerase sigma factor FecI complement(513149..513670) Escherichia coli APEC O78 14480470 YP_007379669.1 CDS APECO78_02430 NC_020163.1 513962 514237 D COG3677 Transposase and inactivated derivatives; transposase 513962..514237 Escherichia coli APEC O78 14480471 YP_007379670.1 CDS APECO78_02435 NC_020163.1 514264 514449 D insertion element protein 514264..514449 Escherichia coli APEC O78 14480472 YP_007379671.1 CDS APECO78_02440 NC_020163.1 514450 514659 D COG1662 Transposase and inactivated derivatives, IS1 family; transposase 514450..514659 Escherichia coli APEC O78 14480473 YP_007379672.1 CDS APECO78_02445 NC_020163.1 515175 516080 R COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB complement(515175..516080) Escherichia coli APEC O78 14480474 YP_007379673.1 CDS APECO78_02450 NC_020163.1 516038 516403 R COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA complement(516038..516403) Escherichia coli APEC O78 14480475 YP_007379674.1 CDS APECO78_02455 NC_020163.1 516756 517013 D hypothetical protein 516756..517013 Escherichia coli APEC O78 14480476 YP_007379675.1 CDS APECO78_02460 NC_020163.1 517176 517385 R hypothetical protein complement(517176..517385) Escherichia coli APEC O78 14480477 YP_007379676.1 CDS APECO78_02465 NC_020163.1 517764 519122 D COG4222 Uncharacterized protein conserved in bacteria; hypothetical protein 517764..519122 Escherichia coli APEC O78 14480478 YP_007379677.1 CDS APECO78_02470 NC_020163.1 519361 520746 R COG3436 Transposase and inactivated derivatives; putative transposase complement(519361..520746) Escherichia coli APEC O78 14480479 YP_007379678.1 CDS APECO78_02475 NC_020163.1 520796 521143 R COG3436 Transposase and inactivated derivatives; putative transposase complement(520796..521143) Escherichia coli APEC O78 14480480 YP_007379679.1 CDS APECO78_02480 NC_020163.1 521140 521541 R COG2963 Transposase and inactivated derivatives; putative transposase, IS3 family protein complement(521140..521541) Escherichia coli APEC O78 14480481 YP_007379680.1 CDS APECO78_02485 NC_020163.1 521875 522309 R hypothetical protein complement(521875..522309) Escherichia coli APEC O78 14480482 YP_007379681.1 CDS APECO78_02490 NC_020163.1 522297 522704 R COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; hypothetical protein complement(522297..522704) Escherichia coli APEC O78 14480483 YP_007379682.1 CDS APECO78_02495 NC_020163.1 522958 523527 R hypothetical protein complement(522958..523527) Escherichia coli APEC O78 14480484 YP_007379683.1 CDS APECO78_02500 NC_020163.1 523730 523924 D hypothetical protein 523730..523924 Escherichia coli APEC O78 14480485 YP_007379684.1 CDS APECO78_02505 NC_020163.1 524257 524397 R hemolysin expression modulating protein complement(524257..524397) Escherichia coli APEC O78 14480486 YP_007379685.1 CDS APECO78_02510 NC_020163.1 524578 524931 D COG4584 Transposase and inactivated derivatives; transposase 524578..524931 Escherichia coli APEC O78 14480487 YP_007379686.1 CDS APECO78_02515 NC_020163.1 524943 525692 D COG1484 DNA replication protein; transposase 524943..525692 Escherichia coli APEC O78 14480488 YP_007379687.1 CDS APECO78_02520 NC_020163.1 526106 527728 D COG0286 Type I restriction-modification system methyltransferase subunit; methyltransferase 526106..527728 Escherichia coli APEC O78 14480489 YP_007379688.1 CDS APECO78_02525 NC_020163.1 527721 528911 D COG0270 Site-specific DNA methylase; methyltransferase 527721..528911 Escherichia coli APEC O78 14480490 YP_007379689.1 CDS APECO78_02530 NC_020163.1 528924 530663 R COG1403 Restriction endonuclease; restriction endonuclease complement(528924..530663) Escherichia coli APEC O78 14480491 YP_007379690.1 CDS APECO78_02535 NC_020163.1 530773 532059 R COG4268 McrBC 5-methylcytosine restriction system component; hypothetical protein complement(530773..532059) Escherichia coli APEC O78 14480492 YP_007379691.1 CDS APECO78_02540 NC_020163.1 532052 534127 R COG1401 GTPase subunit of restriction endonuclease; putative endonuclease complement(532052..534127) Escherichia coli APEC O78 14480493 YP_007379692.1 CDS APECO78_02545 NC_020163.1 534548 534655 R hypothetical protein complement(534548..534655) Escherichia coli APEC O78 14480494 YP_007379693.1 CDS APECO78_02550 NC_020163.1 535231 535485 R COG0463 Glycosyltransferases involved in cell wall biogenesis; putative glycosyltransferase complement(535231..535485) Escherichia coli APEC O78 14480495 YP_007379694.1 CDS APECO78_02555 NC_020163.1 535492 535659 R hypothetical protein complement(535492..535659) Escherichia coli APEC O78 14480496 YP_007379695.1 CDS mtnK NC_020163.1 536285 537544 D COG4857 Predicted kinase; methylthioribose kinase 536285..537544 Escherichia coli APEC O78 14480497 YP_007379696.1 CDS APECO78_02565 NC_020163.1 537554 538669 D COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family; putative translation initiation factor subunit protein 537554..538669 Escherichia coli APEC O78 14480498 YP_007379697.1 CDS APECO78_02570 NC_020163.1 538700 539341 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-fuculose phosphate aldolase 538700..539341 Escherichia coli APEC O78 14480499 YP_007379698.1 CDS APECO78_02575 NC_020163.1 539445 540449 D COG4975 Putative glucose uptake permease; hypothetical protein 539445..540449 Escherichia coli APEC O78 14480500 YP_007379699.1 CDS APECO78_02580 NC_020163.1 540490 541476 R COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; putative transcriptional regulator complement(540490..541476) Escherichia coli APEC O78 14480501 YP_007379700.1 CDS APECO78_02585 NC_020163.1 541514 541636 R hypothetical protein complement(541514..541636) Escherichia coli APEC O78 14480502 YP_007379701.1 CDS APECO78_02590 NC_020163.1 541823 543172 R COG2610 H+/gluconate symporter and related permeases; putative transport protein complement(541823..543172) Escherichia coli APEC O78 14480503 YP_007379702.1 CDS APECO78_02595 NC_020163.1 543279 545246 R COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dehydratase complement(543279..545246) Escherichia coli APEC O78 14480504 YP_007379703.1 CDS APECO78_02600 NC_020163.1 545257 546162 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; putative dihydrodipicolinate synthetase complement(545257..546162) Escherichia coli APEC O78 14480505 YP_007379704.1 CDS APECO78_02605 NC_020163.1 546167 546955 R COG1414 Transcriptional regulator; putative transcriptional regulator complement(546167..546955) Escherichia coli APEC O78 14480506 YP_007379705.1 CDS APECO78_02610 NC_020163.1 547258 548040 R COG1349 Transcriptional regulators of sugar metabolism; putative transcriptional repressor complement(547258..548040) Escherichia coli APEC O78 14480507 YP_007379706.1 CDS APECO78_02615 NC_020163.1 548057 548689 R COG0036 Pentose-5-phosphate-3-epimerase; putative ribulose-phosphate 3-epimerase complement(548057..548689) Escherichia coli APEC O78 14480508 YP_007379707.1 CDS APECO78_02620 NC_020163.1 548701 549132 R COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system IIA component complement(548701..549132) Escherichia coli APEC O78 14480509 YP_007379708.1 CDS APECO78_02625 NC_020163.1 549263 550069 R COG0434 Predicted TIM-barrel enzyme; nucleoside triphosphatase complement(549263..550069) Escherichia coli APEC O78 14480510 YP_007379709.1 CDS APECO78_02630 NC_020163.1 550082 551395 R COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system IIC component complement(550082..551395) Escherichia coli APEC O78 14480511 YP_007379710.1 CDS APECO78_02635 NC_020163.1 551407 551685 R COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system IIB component complement(551407..551685) Escherichia coli APEC O78 14480512 YP_007379711.1 CDS APECO78_02640 NC_020163.1 551682 552803 R COG1363 Cellulase M and related proteins; hypothetical protein complement(551682..552803) Escherichia coli APEC O78 14480513 YP_007379713.1 CDS APECO78_02650 NC_020163.1 553202 553462 R hypothetical protein complement(553202..553462) Escherichia coli APEC O78 14480515 YP_007379714.1 CDS APECO78_02655 NC_020163.1 553590 554336 R COG0500 SAM-dependent methyltransferases; hypothetical protein complement(553590..554336) Escherichia coli APEC O78 14480516 YP_007379715.1 CDS APECO78_02660 NC_020163.1 554388 554939 R COG3153 Predicted acetyltransferase; putative acetyltransferase complement(554388..554939) Escherichia coli APEC O78 14480517 YP_007379716.1 CDS APECO78_02665 NC_020163.1 554951 555208 R COG3811 Uncharacterized protein conserved in bacteria; hypothetical protein complement(554951..555208) Escherichia coli APEC O78 14480518 YP_007379717.1 CDS APECO78_02670 NC_020163.1 555585 555848 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; hypothetical protein complement(555585..555848) Escherichia coli APEC O78 14480519 YP_007379718.1 CDS APECO78_02675 NC_020163.1 555995 557188 D COG1112 Superfamily I DNA and RNA helicases and helicase subunits; Putative phospholipase D 555995..557188 Escherichia coli APEC O78 14480520 YP_007379719.1 CDS APECO78_02680 NC_020163.1 557771 558751 R hypothetical protein complement(557771..558751) Escherichia coli APEC O78 14480521 YP_007379720.1 CDS APECO78_02685 NC_020163.1 558815 559921 R COG3055 Uncharacterized protein conserved in bacteria; hypothetical protein complement(558815..559921) Escherichia coli APEC O78 14480522 YP_007379721.1 CDS APECO78_02690 NC_020163.1 559941 560657 R hypothetical protein complement(559941..560657) Escherichia coli APEC O78 14480523 YP_007379722.1 CDS APECO78_02695 NC_020163.1 561455 561700 R hypothetical protein complement(561455..561700) Escherichia coli APEC O78 14480524 YP_007379723.1 CDS APECO78_02700 NC_020163.1 562111 562713 D COG0582 Integrase; tyrosine recombinase 562111..562713 Escherichia coli APEC O78 14480525 YP_007379724.1 CDS APECO78_02705 NC_020163.1 563191 563787 D COG0582 Integrase; type 1 fimbriae regulator 563191..563787 Escherichia coli APEC O78 14480526 YP_007379725.1 CDS APECO78_02710 NC_020163.1 564268 564816 D COG3539 P pilus assembly protein, pilin FimA; type 1 fimbriae major subunit FimA 564268..564816 Escherichia coli APEC O78 14480527 YP_007379726.1 CDS APECO78_02715 NC_020163.1 564881 565420 D COG3539 P pilus assembly protein, pilin FimA; fimbrial protein involved in type 1 pilus biosynthesis 564881..565420 Escherichia coli APEC O78 14480528 YP_007379727.1 CDS APECO78_02720 NC_020163.1 565457 566182 D COG3121 P pilus assembly protein, chaperone PapD; chaperone FimC, periplasmic 565457..566182 Escherichia coli APEC O78 14480529 YP_007379728.1 CDS APECO78_02725 NC_020163.1 566249 568885 D COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein, type 1 fimbrial synthesis 566249..568885 Escherichia coli APEC O78 14480530 YP_007379729.1 CDS APECO78_02730 NC_020163.1 568895 569425 D COG3539 P pilus assembly protein, pilin FimA; minor component of type 1 fimbriae 568895..569425 Escherichia coli APEC O78 14480531 YP_007379730.1 CDS APECO78_02735 NC_020163.1 569438 569941 D COG3539 P pilus assembly protein, pilin FimA; minor component of type 1 fimbriae 569438..569941 Escherichia coli APEC O78 14480532 YP_007379731.1 CDS APECO78_02740 NC_020163.1 569961 570863 D adhesin 569961..570863 Escherichia coli APEC O78 14480533 YP_007379732.1 CDS APECO78_02745 NC_020163.1 571106 572449 R COG2610 H+/gluconate symporter and related permeases; fructuronate transporter complement(571106..572449) Escherichia coli APEC O78 14480534 YP_007379733.1 CDS APECO78_02750 NC_020163.1 572789 573973 D COG1312 D-mannonate dehydratase; mannonate dehydratase 572789..573973 Escherichia coli APEC O78 14480535 YP_007379734.1 CDS APECO78_02755 NC_020163.1 574054 575514 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; D-mannonate oxidoreductase 574054..575514 Escherichia coli APEC O78 14480536 YP_007379735.1 CDS APECO78_02760 NC_020163.1 575536 575730 R hypothetical protein complement(575536..575730) Escherichia coli APEC O78 14480537 YP_007379736.1 CDS APECO78_02765 NC_020163.1 575729 576502 D COG2186 Transcriptional regulators; DNA-binding transcriptional repressor UxuR 575729..576502 Escherichia coli APEC O78 14480538 YP_007379737.1 CDS APECO78_02770 NC_020163.1 576643 577473 R COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; hypothetical protein complement(576643..577473) Escherichia coli APEC O78 14480539 YP_007379738.1 CDS APECO78_02775 NC_020163.1 578146 578538 D DNA replication/recombination/repair protein 578146..578538 Escherichia coli APEC O78 14480540 YP_007379739.1 CDS APECO78_02780 NC_020163.1 578531 579442 R COG0583 Transcriptional regulator; cell density-dependent motility repressor complement(578531..579442) Escherichia coli APEC O78 14480541 YP_007379740.1 CDS APECO78_02785 NC_020163.1 579507 580679 R COG0044 Dihydroorotase and related cyclic amidohydrolases; isoaspartyl dipeptidase complement(579507..580679) Escherichia coli APEC O78 14480542 YP_007379741.1 CDS APECO78_02790 NC_020163.1 580692 581153 R COG0700 Uncharacterized membrane protein; hypothetical protein complement(580692..581153) Escherichia coli APEC O78 14480543 YP_007379742.1 CDS APECO78_02795 NC_020163.1 581150 581833 R COG3314 Uncharacterized protein conserved in bacteria; hypothetical protein complement(581150..581833) Escherichia coli APEC O78 14480544 YP_007379743.1 CDS APECO78_02800 NC_020163.1 582083 582637 D COG1859 RNA:NAD 2'-phosphotransferase; RNA 2'-phosphotransferase 582083..582637 Escherichia coli APEC O78 14480545 YP_007379744.1 CDS APECO78_02805 NC_020163.1 582650 583828 R COG0477 Permeases of the major facilitator superfamily; inner membrane protein complement(582650..583828) Escherichia coli APEC O78 14480546 YP_007379745.1 CDS APECO78_02810 NC_020163.1 583896 584867 R COG3204 Uncharacterized protein conserved in bacteria; hypothetical protein complement(583896..584867) Escherichia coli APEC O78 14480547 YP_007379746.1 CDS APECO78_02815 NC_020163.1 584821 585078 R hypothetical protein complement(584821..585078) Escherichia coli APEC O78 14480548 YP_007379747.1 CDS APECO78_02820 NC_020163.1 585075 585842 R COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); hypothetical protein complement(585075..585842) Escherichia coli APEC O78 14480549 YP_007379748.1 CDS APECO78_02825 NC_020163.1 585852 587003 R COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; putative 2-hydroxyglutaryl-CoA dehydratase complement(585852..587003) Escherichia coli APEC O78 14480550 YP_007379749.1 CDS APECO78_02830 NC_020163.1 587119 588399 R COG2733 Predicted membrane protein; inner membrane protein complement(587119..588399) Escherichia coli APEC O78 14480551 YP_007379750.1 CDS APECO78_02835 NC_020163.1 588440 589672 R COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtM complement(588440..589672) Escherichia coli APEC O78 14480552 YP_007379751.1 CDS APECO78_02840 NC_020163.1 590139 591095 D hypothetical protein 590139..591095 Escherichia coli APEC O78 14480553 YP_007379752.1 CDS APECO78_02845 NC_020163.1 591338 592750 R COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; fused putative DNA-binding transcriptional regulator/putative amino transferase complement(591338..592750) Escherichia coli APEC O78 14480554 YP_007379753.1 CDS APECO78_02850 NC_020163.1 592927 593091 D protein YjiS 592927..593091 Escherichia coli APEC O78 14480555 YP_007379754.1 CDS APECO78_02855 NC_020163.1 593443 595983 D COG2366 Protein related to penicillin acylase; penicillin G acylase 593443..595983 Escherichia coli APEC O78 14480556 YP_007379755.1 CDS APECO78_02860 NC_020163.1 596061 597017 R COG0523 Putative GTPases (G3E family); GTP-binding protein YjiA complement(596061..597017) Escherichia coli APEC O78 14480557 YP_007379756.1 CDS APECO78_02865 NC_020163.1 597028 597231 R COG2879 Uncharacterized small protein; hypothetical protein complement(597028..597231) Escherichia coli APEC O78 14480558 YP_007379757.1 CDS APECO78_02870 NC_020163.1 597281 599431 R COG1966 Carbon starvation protein, predicted membrane protein; putative carbon starvation protein complement(597281..599431) Escherichia coli APEC O78 14480559 YP_007379758.1 CDS APECO78_02875 NC_020163.1 599824 600336 R COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; 4-hydroxyphenylacetate 3-monooxygenase, reductase component complement(599824..600336) Escherichia coli APEC O78 14480560 YP_007379759.1 CDS APECO78_02880 NC_020163.1 600354 601916 R COG2368 Aromatic ring hydroxylase; 4-hydroxyphenylacetic hydroxylase complement(600354..601916) Escherichia coli APEC O78 14480561 YP_007379760.1 CDS APECO78_02885 NC_020163.1 602167 603057 R COG2207 AraC-type DNA-binding domain-containing proteins; regulator of the 4HPA-hydroxylase operon complement(602167..603057) Escherichia coli APEC O78 14480562 YP_007379761.1 CDS APECO78_02890 NC_020163.1 603067 604443 R COG0477 Permeases of the major facilitator superfamily; putative 4-hydroxyphenylacetate permease complement(603067..604443) Escherichia coli APEC O78 14480563 YP_007379762.1 CDS APECO78_02895 NC_020163.1 604618 605406 R COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(604618..605406) Escherichia coli APEC O78 14480564 YP_007379763.1 CDS APECO78_02900 NC_020163.1 605417 606220 R COG3971 2-keto-4-pentenoate hydratase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase complement(605417..606220) Escherichia coli APEC O78 14480565 YP_007379764.1 CDS APECO78_02905 NC_020163.1 606288 606668 R COG3232 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(606288..606668) Escherichia coli APEC O78 14480566 YP_007379765.1 CDS APECO78_02910 NC_020163.1 606678 607529 R COG3384 Uncharacterized conserved protein; Homoprotocatechuate dyoxygenase complement(606678..607529) Escherichia coli APEC O78 14480567 YP_007379766.1 CDS APECO78_02915 NC_020163.1 607531 608997 R COG1012 NAD-dependent aldehyde dehydrogenases; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase complement(607531..608997) Escherichia coli APEC O78 14480568 YP_007379767.1 CDS APECO78_02920 NC_020163.1 608994 610283 R COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase complement(608994..610283) Escherichia coli APEC O78 14480569 YP_007379768.1 CDS APECO78_02925 NC_020163.1 610555 611001 D COG1846 Transcriptional regulators; homoprotocatechuate degradation operon regulator 610555..611001 Escherichia coli APEC O78 14480570 YP_007379769.1 CDS APECO78_02930 NC_020163.1 611120 612775 D COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein I, serine sensor receptor 611120..612775 Escherichia coli APEC O78 14480571 YP_007379770.1 CDS APECO78_02935 NC_020163.1 612824 614185 R COG0477 Permeases of the major facilitator superfamily; putative transporter complement(612824..614185) Escherichia coli APEC O78 14480572 YP_007379771.1 CDS APECO78_02940 NC_020163.1 614400 615314 R COG1802 Transcriptional regulators; GntR family transcriptional regulator complement(614400..615314) Escherichia coli APEC O78 14480573 YP_007379772.1 CDS APECO78_02945 NC_020163.1 615453 616475 D COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase 615453..616475 Escherichia coli APEC O78 14480574 YP_007379773.1 CDS APECO78_02950 NC_020163.1 616615 618906 R COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; phosphoglycerol transferase I complement(616615..618906) Escherichia coli APEC O78 14480575 YP_007379774.1 CDS APECO78_02955 NC_020163.1 619160 619657 R hypothetical protein complement(619160..619657) Escherichia coli APEC O78 14480576 YP_007379775.1 CDS APECO78_02960 NC_020163.1 619703 620440 R COG1484 DNA replication protein; DNA replication protein DnaC complement(619703..620440) Escherichia coli APEC O78 14480577 YP_007379776.1 CDS APECO78_02965 NC_020163.1 620443 620982 R Primosomal protein 1 complement(620443..620982) Escherichia coli APEC O78 14480578 YP_007379777.1 CDS APECO78_02970 NC_020163.1 621089 621562 R COG3610 Uncharacterized conserved protein; hypothetical protein complement(621089..621562) Escherichia coli APEC O78 14480579 YP_007379778.1 CDS APECO78_02975 NC_020163.1 621553 622323 R COG2966 Uncharacterized conserved protein; hypothetical protein complement(621553..622323) Escherichia coli APEC O78 14480580 YP_007379779.1 CDS APECO78_02980 NC_020163.1 622942 623667 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional regulator 622942..623667 Escherichia coli APEC O78 14480581 YP_007379780.1 CDS APECO78_02985 NC_020163.1 623679 624302 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; LuxR family transcriptional regulator 623679..624302 Escherichia coli APEC O78 14480582 YP_007379781.1 CDS APECO78_02990 NC_020163.1 624340 625128 R COG4114 Uncharacterized Fe-S protein; ferric iron reductase involved in ferric hydroximate transport complement(624340..625128) Escherichia coli APEC O78 14480583 YP_007379782.1 CDS APECO78_02995 NC_020163.1 625269 625505 D hypothetical protein 625269..625505 Escherichia coli APEC O78 14480584 YP_007379783.1 CDS rsmC NC_020163.1 626134 627165 R COG2813 16S RNA G1207 methylase RsmC; 16S ribosomal RNA m2G1207 methyltransferase complement(626134..627165) Escherichia coli APEC O78 14484592 YP_007379784.1 CDS APECO78_03005 NC_020163.1 627268 627681 D COG3050 DNA polymerase III, psi subunit; DNA polymerase III subunit psi 627268..627681 Escherichia coli APEC O78 14480586 YP_007379785.1 CDS rimI NC_020163.1 627650 628096 D COG0456 Acetyltransferases; ribosomal-protein-alanine N-acetyltransferase 627650..628096 Escherichia coli APEC O78 14480587 YP_007379786.1 CDS APECO78_03015 NC_020163.1 628111 628788 D COG1011 Predicted hydrolase (HAD superfamily); dUMP phosphatase 628111..628788 Escherichia coli APEC O78 14480588 YP_007379787.1 CDS APECO78_03020 NC_020163.1 629174 630397 D COG0582 Integrase; site-specific recombinase, phage integrase family protein 629174..630397 Escherichia coli APEC O78 14480589 YP_007379788.1 CDS APECO78_03025 NC_020163.1 630582 631823 D hypothetical protein 630582..631823 Escherichia coli APEC O78 14480590 YP_007379789.1 CDS APECO78_03030 NC_020163.1 632300 632647 R hypothetical protein complement(632300..632647) Escherichia coli APEC O78 14480591 YP_007379790.1 CDS APECO78_03035 NC_020163.1 632644 633522 R COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; phosphoadenosine phosphosulfate reductase family protein complement(632644..633522) Escherichia coli APEC O78 14480592 YP_007379791.1 CDS APECO78_03040 NC_020163.1 633513 634049 R COG1896 Predicted hydrolases of HD superfamily; hypothetical protein complement(633513..634049) Escherichia coli APEC O78 14480593 YP_007379792.1 CDS APECO78_03045 NC_020163.1 634178 635002 R COG5532 Uncharacterized conserved protein; hypothetical protein complement(634178..635002) Escherichia coli APEC O78 14480594 YP_007379793.1 CDS APECO78_03050 NC_020163.1 635067 635429 R hypothetical protein complement(635067..635429) Escherichia coli APEC O78 14480595 YP_007379794.1 CDS APECO78_03055 NC_020163.1 635620 635718 D hypothetical protein 635620..635718 Escherichia coli APEC O78 14480596 YP_007379795.1 CDS APECO78_03060 NC_020163.1 636175 636849 R COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); peptidase, S-24 domain protein complement(636175..636849) Escherichia coli APEC O78 14480597 YP_007379796.1 CDS APECO78_03065 NC_020163.1 636940 637140 D DNA-binding transcriptional regulator 636940..637140 Escherichia coli APEC O78 14480598 YP_007379797.1 CDS APECO78_03070 NC_020163.1 637184 637735 D hypothetical protein 637184..637735 Escherichia coli APEC O78 14480599 YP_007379798.1 CDS APECO78_03075 NC_020163.1 637732 638568 D Immunity region from phage 637732..638568 Escherichia coli APEC O78 14480600 YP_007379799.1 CDS APECO78_03080 NC_020163.1 638573 638797 D hypothetical protein 638573..638797 Escherichia coli APEC O78 14480601 YP_007379800.1 CDS APECO78_03085 NC_020163.1 638794 639612 D replication protein 638794..639612 Escherichia coli APEC O78 14480602 YP_007379801.1 CDS APECO78_03090 NC_020163.1 639609 640103 D hypothetical protein 639609..640103 Escherichia coli APEC O78 14480603 YP_007379802.1 CDS APECO78_03095 NC_020163.1 640103 640756 D phage AdoMet-dependent methyltransferase 640103..640756 Escherichia coli APEC O78 14480604 YP_007379803.1 CDS APECO78_03100 NC_020163.1 640753 641079 D COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein 640753..641079 Escherichia coli APEC O78 14480605 YP_007379804.1 CDS APECO78_03105 NC_020163.1 641076 641465 D COG4570 Holliday junction resolvase; holliday junction resolvase 641076..641465 Escherichia coli APEC O78 14480606 YP_007379805.1 CDS APECO78_03110 NC_020163.1 641485 642294 D KilA-N domain protein 641485..642294 Escherichia coli APEC O78 14480607 YP_007379806.1 CDS APECO78_03115 NC_020163.1 642296 643291 D hypothetical protein 642296..643291 Escherichia coli APEC O78 14480608 YP_007379807.1 CDS APECO78_03120 NC_020163.1 643305 644057 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; prophage antitermination protein 643305..644057 Escherichia coli APEC O78 14480609 YP_007379808.1 CDS APECO78_03125 NC_020163.1 644208 644465 D phage membrane protein 644208..644465 Escherichia coli APEC O78 14480610 YP_007379809.1 CDS APECO78_03130 NC_020163.1 644545 644931 D phage membrane protein 644545..644931 Escherichia coli APEC O78 14480611 YP_007379810.1 CDS APECO78_03135 NC_020163.1 644918 645199 D phage membrane protein 644918..645199 Escherichia coli APEC O78 14480612 YP_007379811.1 CDS APECO78_03140 NC_020163.1 645199 645813 D COG3179 Predicted chitinase; phage endolysin 645199..645813 Escherichia coli APEC O78 14480613 YP_007379812.1 CDS APECO78_03145 NC_020163.1 645810 646271 D Putative endopeptidase 645810..646271 Escherichia coli APEC O78 14480614 YP_007379813.1 CDS APECO78_03150 NC_020163.1 646474 647004 D hypothetical protein 646474..647004 Escherichia coli APEC O78 14480615 YP_007379814.1 CDS APECO78_03155 NC_020163.1 647320 647670 D COG1403 Restriction endonuclease; phage protein 647320..647670 Escherichia coli APEC O78 14480616 YP_007379815.1 CDS APECO78_03160 NC_020163.1 647796 648281 D COG3747 Phage terminase, small subunit; phage terminase small subunit 647796..648281 Escherichia coli APEC O78 14480617 YP_007379816.1 CDS APECO78_03165 NC_020163.1 648295 650028 D COG4626 Phage terminase-like protein, large subunit; putative terminase, large subunit 648295..650028 Escherichia coli APEC O78 14480618 YP_007379817.1 CDS APECO78_03170 NC_020163.1 650025 650186 D hypothetical protein 650025..650186 Escherichia coli APEC O78 14480619 YP_007379818.1 CDS APECO78_03175 NC_020163.1 650176 651402 D COG4695 Phage-related protein; putative phage portal protein 650176..651402 Escherichia coli APEC O78 14480620 YP_007379819.1 CDS APECO78_03180 NC_020163.1 651395 651997 D COG3740 Phage head maturation protease; putative capsid protease 651395..651997 Escherichia coli APEC O78 14480621 YP_007379820.1 CDS APECO78_03185 NC_020163.1 652008 653237 D COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; phage capsid protein 652008..653237 Escherichia coli APEC O78 14480622 YP_007379821.1 CDS APECO78_03190 NC_020163.1 653316 653639 D hypothetical protein 653316..653639 Escherichia coli APEC O78 14480623 YP_007379822.1 CDS APECO78_03195 NC_020163.1 653636 654046 D hypothetical protein 653636..654046 Escherichia coli APEC O78 14480624 YP_007379823.1 CDS APECO78_03200 NC_020163.1 654021 654527 D prophage protein 654021..654527 Escherichia coli APEC O78 14480625 YP_007379824.1 CDS APECO78_03205 NC_020163.1 654524 655084 D bacteriophage protein 654524..655084 Escherichia coli APEC O78 14480626 YP_007379825.1 CDS APECO78_03210 NC_020163.1 655093 655263 D hypothetical protein 655093..655263 Escherichia coli APEC O78 14480627 YP_007379826.1 CDS APECO78_03215 NC_020163.1 655247 656743 D COG4386 Mu-like prophage tail sheath protein gpL; sheath protein 655247..656743 Escherichia coli APEC O78 14480628 YP_007379827.1 CDS APECO78_03220 NC_020163.1 656743 657099 D phage protein 656743..657099 Escherichia coli APEC O78 14480629 YP_007379828.1 CDS APECO78_03225 NC_020163.1 657099 657368 D bacteriophage protein 657099..657368 Escherichia coli APEC O78 14480630 YP_007379829.1 CDS APECO78_03230 NC_020163.1 657510 659345 D tail protein 657510..659345 Escherichia coli APEC O78 14480631 YP_007379830.1 CDS APECO78_03235 NC_020163.1 659406 660734 D COG4228 Mu-like prophage DNA circulation protein; tail/DNA circulation protein 659406..660734 Escherichia coli APEC O78 14480632 YP_007379831.1 CDS APECO78_03240 NC_020163.1 660731 661810 D COG4379 Mu-like prophage tail protein gpP; putative phage tail protein 660731..661810 Escherichia coli APEC O78 14480633 YP_007379832.1 CDS APECO78_03245 NC_020163.1 661810 662358 D COG4384 Mu-like prophage protein gp45; putative baseplate assembly phage protein 661810..662358 Escherichia coli APEC O78 14480634 YP_007379833.1 CDS APECO78_03250 NC_020163.1 662355 662783 D COG4381 Mu-like prophage protein gp46; bacteriophage v tail protein 662355..662783 Escherichia coli APEC O78 14480635 YP_007379834.1 CDS APECO78_03255 NC_020163.1 662770 663828 D COG3299 Uncharacterized homolog of phage Mu protein gp47; bacteriophage v tail protein 662770..663828 Escherichia coli APEC O78 14480636 YP_007379835.1 CDS APECO78_03260 NC_020163.1 663819 664403 D COG3778 Uncharacterized protein conserved in bacteria; putative phage tail protein 663819..664403 Escherichia coli APEC O78 14480637 YP_007379836.1 CDS APECO78_03265 NC_020163.1 664407 665057 D tail fiber protein 664407..665057 Escherichia coli APEC O78 14480638 YP_007379837.1 CDS APECO78_03270 NC_020163.1 665061 665480 D putative phage tail assembly chaperone 665061..665480 Escherichia coli APEC O78 14480639 YP_007379838.1 CDS APECO78_03275 NC_020163.1 665452 666045 R hypothetical protein complement(665452..666045) Escherichia coli APEC O78 14480640 YP_007379839.1 CDS APECO78_03280 NC_020163.1 666045 666539 R putative tail fiber protein complement(666045..666539) Escherichia coli APEC O78 14480641 YP_007379840.1 CDS APECO78_03285 NC_020163.1 666569 667474 R COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB complement(666569..667474) Escherichia coli APEC O78 14480642 YP_007379841.1 CDS APECO78_03290 NC_020163.1 667432 667797 R COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA complement(667432..667797) Escherichia coli APEC O78 14480643 YP_007379842.1 CDS APECO78_03295 NC_020163.1 667905 668261 D COG1961 Site-specific recombinases, DNA invertase Pin homologs; putative pinE invertase/site-specific DNA recombinase 667905..668261 Escherichia coli APEC O78 14480644 YP_007379843.1 CDS APECO78_03300 NC_020163.1 668475 669479 R COG0616 Periplasmic serine proteases (ClpP class); hypothetical protein complement(668475..669479) Escherichia coli APEC O78 14480645 YP_007379844.1 CDS APECO78_03305 NC_020163.1 669788 670036 R DNA-damage-inducible protein complement(669788..670036) Escherichia coli APEC O78 14480646 YP_007379845.1 CDS prfC NC_020163.1 670256 671842 D COG4108 Peptide chain release factor RF-3; peptide chain release factor 3 670256..671842 Escherichia coli APEC O78 14480647 YP_007379846.1 CDS APECO78_03315 NC_020163.1 672235 672840 D COG2823 Predicted periplasmic or secreted lipoprotein; hypothetical protein 672235..672840 Escherichia coli APEC O78 14480648 YP_007379847.1 CDS APECO78_03320 NC_020163.1 672967 673128 D hypothetical protein 672967..673128 Escherichia coli APEC O78 14480649 YP_007379848.1 CDS APECO78_03325 NC_020163.1 673250 674323 D COG4667 Predicted esterase of the alpha-beta hydrolase superfamily; hypothetical protein 673250..674323 Escherichia coli APEC O78 14480650 YP_007379849.1 CDS APECO78_03330 NC_020163.1 674320 675102 D COG0084 Mg-dependent DNase; deoxyribonuclease YjjV 674320..675102 Escherichia coli APEC O78 14480651 YP_007379850.1 CDS APECO78_03335 NC_020163.1 675417 676280 R COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase activating enzyme complement(675417..676280) Escherichia coli APEC O78 14480652 YP_007379851.1 CDS APECO78_03340 NC_020163.1 676252 677802 R hypothetical protein complement(676252..677802) Escherichia coli APEC O78 14480653 YP_007379852.1 CDS APECO78_03345 NC_020163.1 677854 677955 D hypothetical protein 677854..677955 Escherichia coli APEC O78 14480654 YP_007379853.1 CDS APECO78_03350 NC_020163.1 678060 678839 D COG0274 Deoxyribose-phosphate aldolase; deoxyribose-phosphate aldolase 678060..678839 Escherichia coli APEC O78 14480655 YP_007379854.1 CDS deoA NC_020163.1 678966 679697 D COG0213 Thymidine phosphorylase; thymidine phosphorylase 678966..679697 Escherichia coli APEC O78 14480656 YP_007379855.1 CDS APECO78_03360 NC_020163.1 679743 680288 D COG0213 Thymidine phosphorylase; thymidine phosphorylase 679743..680288 Escherichia coli APEC O78 14480657 YP_007379856.1 CDS APECO78_03365 NC_020163.1 680340 681563 D COG1015 Phosphopentomutase; phosphopentomutase 680340..681563 Escherichia coli APEC O78 14480658 YP_007379857.1 CDS deoD NC_020163.1 681643 682362 D COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase 681643..682362 Escherichia coli APEC O78 14480659 YP_007379858.1 CDS APECO78_03375 NC_020163.1 682637 682786 R hypothetical protein complement(682637..682786) Escherichia coli APEC O78 14480660 YP_007379859.1 CDS APECO78_03380 NC_020163.1 682818 683834 R COG0095 Lipoate-protein ligase A; lipoate-protein ligase A complement(682818..683834) Escherichia coli APEC O78 14480661 YP_007379860.1 CDS APECO78_03385 NC_020163.1 683862 684506 R COG3726 Uncharacterized membrane protein affecting hemolysin expression; hypothetical protein complement(683862..684506) Escherichia coli APEC O78 14480662 YP_007379861.1 CDS serB NC_020163.1 684612 685580 D COG0560 Phosphoserine phosphatase; phosphoserine phosphatase 684612..685580 Escherichia coli APEC O78 14480663 YP_007379862.1 CDS APECO78_03395 NC_020163.1 685629 687011 D COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 685629..687011 Escherichia coli APEC O78 14480664 YP_007379863.1 CDS APECO78_03400 NC_020163.1 687032 688264 D COG1396 Predicted transcriptional regulators; bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase 687032..688264 Escherichia coli APEC O78 14480665 YP_007379864.1 CDS APECO78_03405 NC_020163.1 688571 690238 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein complement(688571..690238) Escherichia coli APEC O78 14480666 YP_007379865.1 CDS APECO78_03410 NC_020163.1 690449 692386 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein transglycosylase 690449..692386 Escherichia coli APEC O78 14480667 YP_007379866.1 CDS APECO78_03415 NC_020163.1 692476 692802 D COG2973 Trp operon repressor; Trp operon repressor 692476..692802 Escherichia coli APEC O78 14480668 YP_007379867.1 CDS APECO78_03420 NC_020163.1 692845 693357 R COG1986 Uncharacterized conserved protein; inosine/xanthosine triphosphatase complement(692845..693357) Escherichia coli APEC O78 14480669 YP_007379868.1 CDS APECO78_03425 NC_020163.1 693409 694056 D COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 693409..694056 Escherichia coli APEC O78 14480670 YP_007379869.1 CDS APECO78_03430 NC_020163.1 694053 694922 R COG2207 AraC-type DNA-binding domain-containing proteins; right oriC-binding transcriptional activator complement(694053..694922) Escherichia coli APEC O78 14480671 YP_007379870.1 CDS APECO78_03435 NC_020163.1 695133 695606 D COG3045 Uncharacterized protein conserved in bacteria; hypothetical protein 695133..695606 Escherichia coli APEC O78 14480672 YP_007379871.1 CDS APECO78_03440 NC_020163.1 695619 696308 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding response regulator CreB 695619..696308 Escherichia coli APEC O78 14480673 YP_007379872.1 CDS APECO78_03445 NC_020163.1 696308 697732 D COG0642 Signal transduction histidine kinase; two-component system sensor kinase 696308..697732 Escherichia coli APEC O78 14480674 YP_007379873.1 CDS APECO78_03450 NC_020163.1 697790 699142 D COG4452 Inner membrane protein involved in colicin E2 resistance; hypothetical protein 697790..699142 Escherichia coli APEC O78 14480675 YP_007379874.1 CDS APECO78_03455 NC_020163.1 699201 699917 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator complement(699201..699917) Escherichia coli APEC O78 14480676 YP_007379875.1 CDS APECO78_03460 NC_020163.1 700553 701239 D COG0565 rRNA methylase; RNA methyltransferase 700553..701239 Escherichia coli APEC O78 14480677 YP_007379876.1 CDS APECO78_03465 NC_020163.1 701599 704061 D COG0527 Aspartokinases; bifunctional aspartokinase I/homoserine dehydrogenase I 701599..704061 Escherichia coli APEC O78 14480678 YP_007379877.1 CDS APECO78_03470 NC_020163.1 704063 704995 D COG0083 Homoserine kinase; homoserine kinase 704063..704995 Escherichia coli APEC O78 14480679 YP_007379878.1 CDS APECO78_03475 NC_020163.1 704996 706282 D COG0498 Threonine synthase; threonine synthase 704996..706282 Escherichia coli APEC O78 14480680 YP_007379879.1 CDS APECO78_03480 NC_020163.1 706496 706792 D hypothetical protein 706496..706792 Escherichia coli APEC O78 14480681 YP_007379880.1 CDS APECO78_03485 NC_020163.1 706945 707721 R COG3022 Uncharacterized protein conserved in bacteria; hypothetical protein complement(706945..707721) Escherichia coli APEC O78 14480682 YP_007379881.1 CDS APECO78_03490 NC_020163.1 707791 709221 R COG1115 Na+/alanine symporter; transporter complement(707791..709221) Escherichia coli APEC O78 14480683 YP_007379882.1 CDS APECO78_03495 NC_020163.1 709500 710453 D COG0176 Transaldolase; transaldolase B 709500..710453 Escherichia coli APEC O78 14480684 YP_007379883.1 CDS APECO78_03500 NC_020163.1 710568 711155 D COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA 710568..711155 Escherichia coli APEC O78 14480685 YP_007379884.1 CDS APECO78_03505 NC_020163.1 711190 711756 R COG1584 Predicted membrane protein; hypothetical protein complement(711190..711756) Escherichia coli APEC O78 14480686 YP_007379885.1 CDS APECO78_03510 NC_020163.1 711905 712618 R COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(711905..712618) Escherichia coli APEC O78 14480687 YP_007379886.1 CDS APECO78_03515 NC_020163.1 712644 713048 R hypothetical protein complement(712644..713048) Escherichia coli APEC O78 14480688 YP_007379887.1 CDS APECO78_03520 NC_020163.1 713425 715341 D COG0443 Molecular chaperone; molecular chaperone DnaK 713425..715341 Escherichia coli APEC O78 14480689 YP_007379888.1 CDS APECO78_03525 NC_020163.1 715430 716560 D COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ 715430..716560 Escherichia coli APEC O78 14480690 YP_007379889.1 CDS APECO78_03530 NC_020163.1 716664 716873 R overlaps CDS of hokC; regulatory protein for HokC complement(716664..716873) Escherichia coli APEC O78 14480691 YP_007379890.1 CDS APECO78_03535 NC_020163.1 717238 717360 D hypothetical protein 717238..717360 Escherichia coli APEC O78 14480692 YP_007379891.1 CDS APECO78_03540 NC_020163.1 717402 718568 D COG3004 Na+/H+ antiporter; pH-dependent sodium/proton antiporter 717402..718568 Escherichia coli APEC O78 14480693 YP_007379892.1 CDS APECO78_03545 NC_020163.1 718628 719533 D COG0583 Transcriptional regulator; transcriptional activator NhaR 718628..719533 Escherichia coli APEC O78 14480694 YP_007379893.1 CDS APECO78_03550 NC_020163.1 719572 719997 R hypothetical protein complement(719572..719997) Escherichia coli APEC O78 14480695 YP_007379894.1 CDS APECO78_03555 NC_020163.1 720312 720530 R hypothetical protein complement(720312..720530) Escherichia coli APEC O78 14480696 YP_007379895.1 CDS APECO78_03570 NC_020163.1 722121 722408 R T3SS effector EspX complement(722121..722408) Escherichia coli APEC O78 14480697 YP_007379896.1 CDS APECO78_03575 NC_020163.1 724025 724288 R COG0268 Ribosomal protein S20; 30S ribosomal protein S20 complement(724025..724288) Escherichia coli APEC O78 14480698 YP_007379897.1 CDS APECO78_03580 NC_020163.1 724391 724609 D hypothetical protein 724391..724609 Escherichia coli APEC O78 14480699 YP_007379898.1 CDS APECO78_03585 NC_020163.1 724617 725558 D COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase 724617..725558 Escherichia coli APEC O78 14480700 YP_007379899.1 CDS ileS NC_020163.1 725601 728417 D COG0060 Isoleucyl-tRNA synthetase; isoleucyl-tRNA ligase 725601..728417 Escherichia coli APEC O78 14480701 YP_007379900.1 CDS lspA NC_020163.1 728417 728911 D COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase 728417..728911 Escherichia coli APEC O78 14480702 YP_007379901.1 CDS APECO78_03600 NC_020163.1 729036 729485 D COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase 729036..729485 Escherichia coli APEC O78 14480703 YP_007379902.1 CDS ispH NC_020163.1 729487 730437 D COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 729487..730437 Escherichia coli APEC O78 14480704 YP_007379903.1 CDS APECO78_03610 NC_020163.1 730503 731417 D COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase RihC 730503..731417 Escherichia coli APEC O78 14480705 YP_007379904.1 CDS APECO78_03615 NC_020163.1 731584 732405 D COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 731584..732405 Escherichia coli APEC O78 14480706 YP_007379905.1 CDS APECO78_03620 NC_020163.1 732861 734009 D COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 732861..734009 Escherichia coli APEC O78 14480707 YP_007379906.1 CDS APECO78_03625 NC_020163.1 734027 737248 D COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit 734027..737248 Escherichia coli APEC O78 14480708 YP_007379907.1 CDS APECO78_03630 NC_020163.1 737509 737904 D DNA-binding transcriptional activator CaiF 737509..737904 Escherichia coli APEC O78 14480709 YP_007379908.1 CDS APECO78_03635 NC_020163.1 737990 738580 R COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; carnitine operon protein CaiE complement(737990..738580) Escherichia coli APEC O78 14480710 YP_007379909.1 CDS APECO78_03640 NC_020163.1 738586 739371 R COG1024 Enoyl-CoA hydratase/carnithine racemase; carnitinyl-CoA dehydratase complement(738586..739371) Escherichia coli APEC O78 14480711 YP_007379910.1 CDS caiC NC_020163.1 739480 741033 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; crotonobetaine/carnitine-CoA ligase complement(739480..741033) Escherichia coli APEC O78 14480712 YP_007379911.1 CDS APECO78_03650 NC_020163.1 741107 742324 R COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; crotonobetainyl-CoA:carnitine CoA-transferase complement(741107..742324) Escherichia coli APEC O78 14480713 YP_007379912.1 CDS APECO78_03655 NC_020163.1 742453 743595 R COG1960 Acyl-CoA dehydrogenases; crotonobetainyl-CoA dehydrogenase complement(742453..743595) Escherichia coli APEC O78 14480714 YP_007379913.1 CDS APECO78_03660 NC_020163.1 743626 745140 R COG1292 Choline-glycine betaine transporter; L-carnitine/gamma-butyrobetaine antiporter complement(743626..745140) Escherichia coli APEC O78 14480715 YP_007379914.1 CDS APECO78_03665 NC_020163.1 745614 746384 D COG2086 Electron transfer flavoprotein, beta subunit; hypothetical protein 745614..746384 Escherichia coli APEC O78 14480716 YP_007379915.1 CDS APECO78_03670 NC_020163.1 746399 747340 D COG2025 Electron transfer flavoprotein, alpha subunit; putative electron transfer flavoprotein FixB 746399..747340 Escherichia coli APEC O78 14480717 YP_007379916.1 CDS APECO78_03675 NC_020163.1 747391 748677 D COG0644 Dehydrogenases (flavoproteins); flavoprotein FixC 747391..748677 Escherichia coli APEC O78 14480718 YP_007379917.1 CDS APECO78_03680 NC_020163.1 748674 748961 D COG2440 Ferredoxin-like protein; ferredoxin-like protein FixX 748674..748961 Escherichia coli APEC O78 14480719 YP_007379918.1 CDS APECO78_03685 NC_020163.1 749019 750350 D COG0477 Permeases of the major facilitator superfamily; putative transport protein 749019..750350 Escherichia coli APEC O78 14480720 YP_007379919.1 CDS APECO78_03690 NC_020163.1 750458 750988 D COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefF 750458..750988 Escherichia coli APEC O78 14480721 YP_007379920.1 CDS APECO78_03695 NC_020163.1 750981 752843 D COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein 750981..752843 Escherichia coli APEC O78 14480722 YP_007379921.1 CDS APECO78_03700 NC_020163.1 753035 753514 D COG0262 Dihydrofolate reductase; dihydrofolate reductase 753035..753514 Escherichia coli APEC O78 14480723 YP_007379922.1 CDS APECO78_03705 NC_020163.1 753592 754434 R COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; diadenosine tetraphosphatase complement(753592..754434) Escherichia coli APEC O78 14480724 YP_007379923.1 CDS APECO78_03710 NC_020163.1 754441 754818 R COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; CO2+/MG2+ efflux protein ApaG complement(754441..754818) Escherichia coli APEC O78 14480725 YP_007379924.1 CDS APECO78_03715 NC_020163.1 754821 755642 R COG0030 Dimethyladenosine transferase (rRNA methylation); dimethyladenosine transferase complement(754821..755642) Escherichia coli APEC O78 14480726 YP_007379925.1 CDS pdxA NC_020163.1 755639 756628 R COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase complement(755639..756628) Escherichia coli APEC O78 14480727 YP_007379926.1 CDS APECO78_03725 NC_020163.1 756628 757914 R COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase SurA complement(756628..757914) Escherichia coli APEC O78 14480728 YP_007379927.1 CDS APECO78_03730 NC_020163.1 757967 760321 R COG1452 Organic solvent tolerance protein OstA; LPS assembly outer membrane complex protein LptD complement(757967..760321) Escherichia coli APEC O78 14480729 YP_007379928.1 CDS djlA NC_020163.1 760576 761391 D COG1076 DnaJ-domain-containing proteins 1; Dna-J like membrane chaperone protein 760576..761391 Escherichia coli APEC O78 14480730 YP_007379929.1 CDS APECO78_03740 NC_020163.1 761508 762167 R COG0564 Pseudouridylate synthases, 23S RNA-specific; Ribosomal large subunit pseudouridine synthase A complement(761508..762167) Escherichia coli APEC O78 14480731 YP_007379930.1 CDS APECO78_03745 NC_020163.1 762179 765085 R COG0553 Superfamily II DNA/RNA helicases, SNF2 family; ATP-dependent helicase HepA complement(762179..765085) Escherichia coli APEC O78 14480732 YP_007379931.1 CDS APECO78_03750 NC_020163.1 765250 767601 R COG0417 DNA polymerase elongation subunit (family B); DNA polymerase II complement(765250..767601) Escherichia coli APEC O78 14480733 YP_007379932.1 CDS araD NC_020163.1 767676 768371 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase complement(767676..768371) Escherichia coli APEC O78 14480734 YP_007379933.1 CDS APECO78_03760 NC_020163.1 768571 770073 R COG2160 L-arabinose isomerase; L-arabinose isomerase complement(768571..770073) Escherichia coli APEC O78 14480735 YP_007379934.1 CDS APECO78_03765 NC_020163.1 770084 771784 R COG1069 Ribulose kinase; ribulokinase complement(770084..771784) Escherichia coli APEC O78 14480736 YP_007379935.1 CDS APECO78_03770 NC_020163.1 772123 773001 D COG2207 AraC-type DNA-binding domain-containing proteins; arabinose operon regulatory protein 772123..773001 Escherichia coli APEC O78 14480737 YP_007379936.1 CDS APECO78_03775 NC_020163.1 773087 773851 D COG0586 Uncharacterized membrane-associated protein; inner membrane protein 773087..773851 Escherichia coli APEC O78 14480738 YP_007379937.1 CDS thiQ NC_020163.1 773965 774663 R COG3840 ABC-type thiamine transport system, ATPase component; thiamine transporter ATP-binding subunit complement(773965..774663) Escherichia coli APEC O78 14480739 YP_007379938.1 CDS thiP NC_020163.1 774647 776257 R COG0555 ABC-type sulfate transport system, permease component; thiamine transporter membrane protein complement(774647..776257) Escherichia coli APEC O78 14480740 YP_007379939.1 CDS tbpA NC_020163.1 776233 777216 R COG4143 ABC-type thiamine transport system, periplasmic component; thiamine transporter substrate binding subunit complement(776233..777216) Escherichia coli APEC O78 14480741 YP_007379940.1 CDS APECO78_03795 NC_020163.1 777380 779035 R COG4533 ABC-type uncharacterized transport system, periplasmic component; transcriptional regulator SgrR complement(777380..779035) Escherichia coli APEC O78 14480742 YP_007379941.1 CDS APECO78_03800 NC_020163.1 779124 779255 D hypothetical protein 779124..779255 Escherichia coli APEC O78 14480743 YP_007379942.1 CDS APECO78_03805 NC_020163.1 779357 780535 D COG0477 Permeases of the major facilitator superfamily; broad specificity sugar efflux system SetA 779357..780535 Escherichia coli APEC O78 14480744 YP_007379943.1 CDS APECO78_03810 NC_020163.1 780584 781189 R COG0066 3-isopropylmalate dehydratase small subunit; isopropylmalate isomerase small subunit complement(780584..781189) Escherichia coli APEC O78 14480745 YP_007379944.1 CDS APECO78_03815 NC_020163.1 781200 782600 R COG0065 3-isopropylmalate dehydratase large subunit; 3-isopropylmalate dehydratase large subunit complement(781200..782600) Escherichia coli APEC O78 14480746 YP_007379945.1 CDS APECO78_03820 NC_020163.1 782603 783694 R COG0473 Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(782603..783694) Escherichia coli APEC O78 14480747 YP_007379946.1 CDS APECO78_03825 NC_020163.1 783694 785265 R COG0119 Isopropylmalate/homocitrate/citramalate synthases; 2-isopropylmalate synthase complement(783694..785265) Escherichia coli APEC O78 14480748 YP_007379947.1 CDS APECO78_03830 NC_020163.1 785358 785444 R leu operon leader peptide complement(785358..785444) Escherichia coli APEC O78 14480749 YP_007379948.1 CDS leuO NC_020163.1 786104 787048 D COG0583 Transcriptional regulator; leucine transcriptional activator 786104..787048 Escherichia coli APEC O78 14480750 YP_007379949.1 CDS APECO78_03840 NC_020163.1 787366 789090 D COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 3 catalytic subunit 787366..789090 Escherichia coli APEC O78 14480751 YP_007379950.1 CDS ilvH NC_020163.1 789093 789584 D COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 3 regulatory subunit 789093..789584 Escherichia coli APEC O78 14480752 YP_007379951.1 CDS APECO78_03850 NC_020163.1 789764 790768 D COG1609 Transcriptional regulators; DNA-binding transcriptional regulator FruR 789764..790768 Escherichia coli APEC O78 14480753 YP_007379952.1 CDS APECO78_03855 NC_020163.1 791370 791828 D COG2001 Uncharacterized protein conserved in bacteria; cell division protein MraZ 791370..791828 Escherichia coli APEC O78 14480754 YP_007379953.1 CDS APECO78_03860 NC_020163.1 791830 792771 D COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 791830..792771 Escherichia coli APEC O78 14480755 YP_007379954.1 CDS APECO78_03865 NC_020163.1 792768 793133 D COG3116 Cell division protein; cell division protein FtsL 792768..793133 Escherichia coli APEC O78 14480756 YP_007379955.1 CDS APECO78_03870 NC_020163.1 793149 794915 D COG0768 Cell division protein FtsI/penicillin-binding protein 2; peptidoglycan synthase FtsI 793149..794915 Escherichia coli APEC O78 14480757 YP_007379956.1 CDS murE NC_020163.1 794902 796389 D COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 794902..796389 Escherichia coli APEC O78 14480758 YP_007379957.1 CDS APECO78_03880 NC_020163.1 796386 797744 D COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 796386..797744 Escherichia coli APEC O78 14480759 YP_007379958.1 CDS APECO78_03885 NC_020163.1 797738 798820 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 797738..798820 Escherichia coli APEC O78 14480760 YP_007379959.1 CDS APECO78_03890 NC_020163.1 798823 800139 D COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 798823..800139 Escherichia coli APEC O78 14480761 YP_007379960.1 CDS APECO78_03895 NC_020163.1 800139 801383 D COG0772 Bacterial cell division membrane protein; cell division protein FtsW 800139..801383 Escherichia coli APEC O78 14480762 YP_007379961.1 CDS murG NC_020163.1 801380 802447 D COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 801380..802447 Escherichia coli APEC O78 14480763 YP_007379962.1 CDS murC NC_020163.1 802501 803976 D COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 802501..803976 Escherichia coli APEC O78 14480764 YP_007379963.1 CDS ddl NC_020163.1 803969 804889 D COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanine--D-alanine ligase 803969..804889 Escherichia coli APEC O78 14480765 YP_007379964.1 CDS APECO78_03915 NC_020163.1 804891 805721 D COG1589 Cell division septal protein; cell division protein FtsQ 804891..805721 Escherichia coli APEC O78 14480766 YP_007379965.1 CDS APECO78_03920 NC_020163.1 805718 806980 D COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 805718..806980 Escherichia coli APEC O78 14480767 YP_007379966.1 CDS APECO78_03925 NC_020163.1 807041 808192 D COG0206 Cell division GTPase; cell division protein FtsZ 807041..808192 Escherichia coli APEC O78 14480768 YP_007379967.1 CDS APECO78_03930 NC_020163.1 808293 809210 D COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 808293..809210 Escherichia coli APEC O78 14480769 YP_007379968.1 CDS APECO78_03935 NC_020163.1 809441 809953 D SecA regulator SecM 809441..809953 Escherichia coli APEC O78 14480770 YP_007379969.1 CDS APECO78_03940 NC_020163.1 810015 812720 D COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 810015..812720 Escherichia coli APEC O78 14480771 YP_007379970.1 CDS APECO78_03945 NC_020163.1 812780 813169 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Mutator mutT protein 812780..813169 Escherichia coli APEC O78 14480772 YP_007379971.1 CDS APECO78_03950 NC_020163.1 813385 813582 R COG3024 Uncharacterized protein conserved in bacteria; DNA gyrase inhibitor complement(813385..813582) Escherichia coli APEC O78 14480773 YP_007379972.1 CDS APECO78_03955 NC_020163.1 813592 814335 R COG4582 Uncharacterized protein conserved in bacteria; hypothetical protein complement(813592..814335) Escherichia coli APEC O78 14480774 YP_007379973.1 CDS APECO78_03960 NC_020163.1 814335 814955 R COG0237 Dephospho-CoA kinase; dephospho-CoA kinase complement(814335..814955) Escherichia coli APEC O78 14480775 YP_007379974.1 CDS APECO78_03965 NC_020163.1 815180 816223 D COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 815180..816223 Escherichia coli APEC O78 14480776 YP_007379975.1 CDS APECO78_03970 NC_020163.1 816258 817460 R COG1459 Type II secretory pathway, component PulF; type IV pilin biogenesis protein complement(816258..817460) Escherichia coli APEC O78 14480777 YP_007379976.1 CDS APECO78_03975 NC_020163.1 817450 818835 R COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; hypothetical protein complement(817450..818835) Escherichia coli APEC O78 14480778 YP_007379977.1 CDS APECO78_03980 NC_020163.1 818845 819285 R COG4969 Tfp pilus assembly protein, major pilin PilA; major pilin subunit complement(818845..819285) Escherichia coli APEC O78 14480779 YP_007379978.1 CDS APECO78_03985 NC_020163.1 819488 820381 R COG0157 Nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase complement(819488..820381) Escherichia coli APEC O78 14480780 YP_007379979.1 CDS APECO78_03990 NC_020163.1 820469 821020 D COG3023 Negative regulator of beta-lactamase expression; N-acetyl-anhydromuranmyl-L-alanine amidase 820469..821020 Escherichia coli APEC O78 14480781 YP_007379980.1 CDS APECO78_03995 NC_020163.1 821017 821871 D COG1270 Cobalamin biosynthesis protein CobD/CbiB; ampE 821017..821871 Escherichia coli APEC O78 14480782 YP_007379981.1 CDS APECO78_04000 NC_020163.1 821914 823284 R COG1113 Gamma-aminobutyrate permease and related permeases; aromatic amino acid transporter complement(821914..823284) Escherichia coli APEC O78 14480783 YP_007379982.1 CDS APECO78_04005 NC_020163.1 823828 824592 D COG2186 Transcriptional regulators; transcriptional regulator PdhR 823828..824592 Escherichia coli APEC O78 14480784 YP_007379983.1 CDS aceE NC_020163.1 824753 827416 D COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component; pyruvate dehydrogenase subunit E1 824753..827416 Escherichia coli APEC O78 14480785 YP_007379984.1 CDS APECO78_04015 NC_020163.1 827431 829323 D COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide acetyltransferase 827431..829323 Escherichia coli APEC O78 14480786 YP_007379985.1 CDS APECO78_04020 NC_020163.1 829531 830955 D COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; dihydrolipoamide dehydrogenase 829531..830955 Escherichia coli APEC O78 14480787 YP_007379986.1 CDS APECO78_04025 NC_020163.1 831026 832840 R hypothetical protein complement(831026..832840) Escherichia coli APEC O78 14480788 YP_007379987.1 CDS APECO78_04030 NC_020163.1 833195 835792 D COG1049 Aconitase B; aconitate hydratase AcnB 833195..835792 Escherichia coli APEC O78 14480789 YP_007379988.1 CDS APECO78_04035 NC_020163.1 835967 836329 D COG3112 Uncharacterized protein conserved in bacteria; hypothetical protein 835967..836329 Escherichia coli APEC O78 14480790 YP_007379989.1 CDS APECO78_04040 NC_020163.1 836367 837161 R COG1586 S-adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase complement(836367..837161) Escherichia coli APEC O78 14480791 YP_007379990.1 CDS APECO78_04045 NC_020163.1 837177 838043 R COG0421 Spermidine synthase; spermidine synthase complement(837177..838043) Escherichia coli APEC O78 14480792 YP_007379991.1 CDS APECO78_04050 NC_020163.1 838149 838496 R hypothetical protein complement(838149..838496) Escherichia coli APEC O78 14480793 YP_007379992.1 CDS APECO78_04055 NC_020163.1 838662 840212 D COG2132 Putative multicopper oxidases; multicopper oxidase 838662..840212 Escherichia coli APEC O78 14480794 YP_007379993.1 CDS APECO78_04060 NC_020163.1 840414 842804 R COG4993 Glucose dehydrogenase; glucose dehydrogenase complement(840414..842804) Escherichia coli APEC O78 14480795 YP_007379994.1 CDS APECO78_04065 NC_020163.1 843010 843546 D COG0634 Hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 843010..843546 Escherichia coli APEC O78 14480796 YP_007379995.1 CDS APECO78_04070 NC_020163.1 843587 844249 R COG0288 Carbonic anhydrase; carbonic anhydrase complement(843587..844249) Escherichia coli APEC O78 14480797 YP_007379996.1 CDS APECO78_04075 NC_020163.1 844358 845284 D COG1131 ABC-type multidrug transport system, ATPase component; transporter subunit 844358..845284 Escherichia coli APEC O78 14480798 YP_007379997.1 CDS APECO78_04080 NC_020163.1 845281 846051 D COG0842 ABC-type multidrug transport system, permease component; inner membrane transport permease 845281..846051 Escherichia coli APEC O78 14480799 YP_007379998.1 CDS APECO78_04085 NC_020163.1 846156 846596 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative PTS Enzyme IIA 846156..846596 Escherichia coli APEC O78 14480800 YP_007379999.1 CDS APECO78_04090 NC_020163.1 846660 847889 D COG0726 Predicted xylanase/chitin deacetylase; polysaccharide deacetylase 846660..847889 Escherichia coli APEC O78 14480801 YP_007380000.1 CDS APECO78_04095 NC_020163.1 847893 848273 R COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase complement(847893..848273) Escherichia coli APEC O78 14480802 YP_007380001.1 CDS APECO78_04100 NC_020163.1 848547 849449 D putative transposase 848547..849449 Escherichia coli APEC O78 14480803 YP_007380002.1 CDS panC NC_020163.1 849523 850374 R COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase complement(849523..850374) Escherichia coli APEC O78 14480804 YP_007380003.1 CDS panB NC_020163.1 850386 851180 R COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(850386..851180) Escherichia coli APEC O78 14480805 YP_007380004.1 CDS APECO78_04115 NC_020163.1 851293 852567 R fimbrial-like adhesin protein complement(851293..852567) Escherichia coli APEC O78 14480806 YP_007380005.1 CDS APECO78_04120 NC_020163.1 852620 853216 R fimbrial protein StaF complement(852620..853216) Escherichia coli APEC O78 14480807 YP_007380006.1 CDS APECO78_04125 NC_020163.1 853243 853845 R fimbrial protein StaE complement(853243..853845) Escherichia coli APEC O78 14480808 YP_007380007.1 CDS APECO78_04130 NC_020163.1 853860 854429 R fimbrial protein complement(853860..854429) Escherichia coli APEC O78 14480809 YP_007380008.1 CDS APECO78_04135 NC_020163.1 854446 857046 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein complement(854446..857046) Escherichia coli APEC O78 14480810 YP_007380009.1 CDS APECO78_04140 NC_020163.1 857081 857821 R COG3121 P pilus assembly protein, chaperone PapD; chaperone protein EcpD complement(857081..857821) Escherichia coli APEC O78 14480811 YP_007380010.1 CDS APECO78_04145 NC_020163.1 857926 858510 R COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein complement(857926..858510) Escherichia coli APEC O78 14480812 YP_007380011.1 CDS APECO78_04150 NC_020163.1 858880 859359 R COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(858880..859359) Escherichia coli APEC O78 14480813 YP_007380012.1 CDS pcnB NC_020163.1 859356 860774 R COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; poly(A) polymerase I complement(859356..860774) Escherichia coli APEC O78 14480814 YP_007380013.1 CDS APECO78_04160 NC_020163.1 860813 861739 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-Q tRNA(Asp) ligase complement(860813..861739) Escherichia coli APEC O78 14480815 YP_007380014.1 CDS APECO78_04165 NC_020163.1 861776 862231 R COG1734 DnaK suppressor protein; DnaK transcriptional regulator DksA complement(861776..862231) Escherichia coli APEC O78 14480816 YP_007380015.1 CDS APECO78_04170 NC_020163.1 862409 863113 R COG1489 DNA-binding protein, stimulates sugar fermentation; DNA-binding transcriptional regulator complement(862409..863113) Escherichia coli APEC O78 14480817 YP_007380016.1 CDS APECO78_04175 NC_020163.1 863128 863658 R COG1514 2'-5' RNA ligase; 2'-5' RNA ligase complement(863128..863658) Escherichia coli APEC O78 14480818 YP_007380017.1 CDS APECO78_04180 NC_020163.1 863732 866161 D COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpB 863732..866161 Escherichia coli APEC O78 14480819 YP_007380018.1 CDS APECO78_04185 NC_020163.1 866357 868879 D COG0744 Membrane carboxypeptidase (penicillin-binding protein); penicillin-binding protein 1b 866357..868879 Escherichia coli APEC O78 14480820 YP_007380019.1 CDS APECO78_04190 NC_020163.1 869099 871288 D COG1629 Outer membrane receptor proteins, mostly Fe transport; ferrichrome outer membrane transporter 869099..871288 Escherichia coli APEC O78 14480821 YP_007380020.1 CDS APECO78_04195 NC_020163.1 871339 872136 D COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-hydroxamate transporter ATP-binding subunit 871339..872136 Escherichia coli APEC O78 14480822 YP_007380021.1 CDS APECO78_04200 NC_020163.1 872136 873026 D COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron-hydroxamate transporter substrate-binding subunit 872136..873026 Escherichia coli APEC O78 14480823 YP_007380022.1 CDS APECO78_04205 NC_020163.1 873023 875005 D COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-hydroxamate transporter permease subunit 873023..875005 Escherichia coli APEC O78 14480824 YP_007380023.1 CDS APECO78_04210 NC_020163.1 875040 876320 R COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase complement(875040..876320) Escherichia coli APEC O78 14480825 YP_007380024.1 CDS APECO78_04215 NC_020163.1 876545 877966 D COG0038 Chloride channel protein EriC; chloride channel protein 876545..877966 Escherichia coli APEC O78 14480826 YP_007380025.1 CDS APECO78_04220 NC_020163.1 878048 878392 D COG0316 Uncharacterized conserved protein; iron-sulfur cluster insertion protein ErpA 878048..878392 Escherichia coli APEC O78 14480827 YP_007380026.1 CDS APECO78_04225 NC_020163.1 878439 879062 R COG2860 Predicted membrane protein; hypothetical protein complement(878439..879062) Escherichia coli APEC O78 14480828 YP_007380027.1 CDS APECO78_04230 NC_020163.1 879100 879900 R COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; vitamin B12-transporter protein BtuF complement(879100..879900) Escherichia coli APEC O78 14480829 YP_007380028.1 CDS APECO78_04235 NC_020163.1 879893 880591 R COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(879893..880591) Escherichia coli APEC O78 14480830 YP_007380029.1 CDS dgt NC_020163.1 880675 882192 D COG0232 dGTP triphosphohydrolase; deoxyguanosinetriphosphate triphosphohydrolase 880675..882192 Escherichia coli APEC O78 14480831 YP_007380030.1 CDS APECO78_04245 NC_020163.1 882322 883746 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 882322..883746 Escherichia coli APEC O78 14480832 YP_007380031.1 CDS APECO78_04250 NC_020163.1 883901 885058 D COG3835 Sugar diacid utilization regulator; carbohydrate diacid transcriptional activator CdaR 883901..885058 Escherichia coli APEC O78 14480833 YP_007380032.1 CDS APECO78_04255 NC_020163.1 885147 885533 R hypothetical protein complement(885147..885533) Escherichia coli APEC O78 14480834 YP_007380033.1 CDS APECO78_04260 NC_020163.1 885848 886672 R COG2171 Tetrahydrodipicolinate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(885848..886672) Escherichia coli APEC O78 14480835 YP_007380034.1 CDS APECO78_04265 NC_020163.1 886703 889375 R COG2844 UTP:GlnB (protein PII) uridylyltransferase; PII uridylyl-transferase complement(886703..889375) Escherichia coli APEC O78 14480836 YP_007380035.1 CDS APECO78_04270 NC_020163.1 889437 890231 R COG0024 Methionine aminopeptidase; methionine aminopeptidase complement(889437..890231) Escherichia coli APEC O78 14480837 YP_007380036.1 CDS rpsB NC_020163.1 890599 891324 D COG0052 Ribosomal protein S2; 30S ribosomal protein S2 890599..891324 Escherichia coli APEC O78 14480838 YP_007380037.1 CDS APECO78_04280 NC_020163.1 891582 892433 D COG0264 Translation elongation factor Ts; elongation factor Ts 891582..892433 Escherichia coli APEC O78 14480839 YP_007380038.1 CDS APECO78_04285 NC_020163.1 892580 893305 D COG0528 Uridylate kinase; uridylate kinase 892580..893305 Escherichia coli APEC O78 14480840 YP_007380039.1 CDS APECO78_04290 NC_020163.1 893455 894012 D COG0233 Ribosome recycling factor; ribosome recycling factor 893455..894012 Escherichia coli APEC O78 14480841 YP_007380040.1 CDS APECO78_04295 NC_020163.1 894104 895300 D COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 894104..895300 Escherichia coli APEC O78 14480842 YP_007380041.1 CDS APECO78_04300 NC_020163.1 895489 896247 D COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase 895489..896247 Escherichia coli APEC O78 14480843 YP_007380042.1 CDS APECO78_04305 NC_020163.1 896260 897117 D COG0575 CDP-diglyceride synthetase; CDP-diglyceride synthase 896260..897117 Escherichia coli APEC O78 14480844 YP_007380043.1 CDS APECO78_04310 NC_020163.1 897129 898481 D COG0750 Predicted membrane-associated Zn-dependent proteases 1; zinc metallopeptidase RseP 897129..898481 Escherichia coli APEC O78 14480845 YP_007380044.1 CDS APECO78_04315 NC_020163.1 898511 900943 D COG4775 Outer membrane protein/protective antigen OMA87; outer membrane protein assembly factor YaeT 898511..900943 Escherichia coli APEC O78 14480846 YP_007380045.1 CDS APECO78_04320 NC_020163.1 901065 901550 D COG2825 Outer membrane protein; periplasmic chaperone 901065..901550 Escherichia coli APEC O78 14480847 YP_007380046.1 CDS lpxD NC_020163.1 901554 902579 D COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 901554..902579 Escherichia coli APEC O78 14480848 YP_007380047.1 CDS APECO78_04330 NC_020163.1 902684 903139 D COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase 902684..903139 Escherichia coli APEC O78 14480849 YP_007380048.1 CDS APECO78_04335 NC_020163.1 903143 903931 D COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase 903143..903931 Escherichia coli APEC O78 14480850 YP_007380049.1 CDS lpxB NC_020163.1 903931 905079 D COG0763 Lipid A disaccharide synthetase; lipid-A-disaccharide synthase 903931..905079 Escherichia coli APEC O78 14480851 YP_007380050.1 CDS APECO78_04345 NC_020163.1 905076 905672 D COG0164 Ribonuclease HII; ribonuclease HII 905076..905672 Escherichia coli APEC O78 14480852 YP_007380051.1 CDS dnaE NC_020163.1 905707 909189 D COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha 905707..909189 Escherichia coli APEC O78 14480853 YP_007380052.1 CDS APECO78_04355 NC_020163.1 909202 910161 D COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha 909202..910161 Escherichia coli APEC O78 14480854 YP_007380053.1 CDS APECO78_04360 NC_020163.1 910260 912401 D COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase LdcC 910260..912401 Escherichia coli APEC O78 14480855 YP_007380054.1 CDS APECO78_04365 NC_020163.1 912458 912847 D COG0346 Lactoylglutathione lyase and related lyases; lyase 912458..912847 Escherichia coli APEC O78 14480856 YP_007380055.1 CDS tilS NC_020163.1 912912 914210 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine ligase 912912..914210 Escherichia coli APEC O78 14480857 YP_007380056.1 CDS APECO78_04375 NC_020163.1 914259 914519 R COG4568 Transcriptional antiterminator; Rho-binding antiterminator complement(914259..914519) Escherichia coli APEC O78 14480858 YP_007380057.1 CDS APECO78_04380 NC_020163.1 914506 914706 R hypothetical protein complement(914506..914706) Escherichia coli APEC O78 14480859 YP_007380058.1 CDS APECO78_04385 NC_020163.1 914872 915417 D COG4681 Uncharacterized protein conserved in bacteria; hypothetical protein 914872..915417 Escherichia coli APEC O78 14480860 YP_007380059.1 CDS APECO78_04390 NC_020163.1 915414 915836 D COG1186 Protein chain release factor B; hypothetical protein 915414..915836 Escherichia coli APEC O78 14480861 YP_007380060.1 CDS APECO78_04395 NC_020163.1 915850 916560 D COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance; lipoprotein involved with copper homeostasis and adhesion 915850..916560 Escherichia coli APEC O78 14480862 YP_007380061.1 CDS APECO78_04400 NC_020163.1 916590 916721 D LivJ protein 916590..916721 Escherichia coli APEC O78 14480863 YP_007380062.1 CDS APECO78_04405 NC_020163.1 916715 916951 R hypothetical protein complement(916715..916951) Escherichia coli APEC O78 14480864 YP_007380063.1 CDS APECO78_04410 NC_020163.1 916957 917538 R COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein complement(916957..917538) Escherichia coli APEC O78 14480865 YP_007380064.1 CDS APECO78_04415 NC_020163.1 917591 919309 R COG0442 Prolyl-tRNA synthetase; prolyl-tRNA synthetase complement(917591..919309) Escherichia coli APEC O78 14480866 YP_007380065.1 CDS APECO78_04420 NC_020163.1 919421 920128 R COG1720 Uncharacterized conserved protein; hypothetical protein complement(919421..920128) Escherichia coli APEC O78 14480867 YP_007380066.1 CDS APECO78_04425 NC_020163.1 920125 920529 R outer membrane lipoprotein complement(920125..920529) Escherichia coli APEC O78 14480868 YP_007380067.1 CDS APECO78_04430 NC_020163.1 920647 921462 R COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; DL-methionine transporter substrate-binding subunit complement(920647..921462) Escherichia coli APEC O78 14480869 YP_007380068.1 CDS APECO78_04435 NC_020163.1 921502 922155 R COG2011 ABC-type metal ion transport system, permease component; DL-methionine transporter permease complement(921502..922155) Escherichia coli APEC O78 14480870 YP_007380069.1 CDS APECO78_04440 NC_020163.1 922148 923179 R COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine transporter ATP-binding subunit complement(922148..923179) Escherichia coli APEC O78 14480871 YP_007380070.1 CDS APECO78_04445 NC_020163.1 923367 923942 D COG0241 Histidinol phosphatase and related phosphatases; D,D-heptose 1,7-bisphosphate phosphatase 923367..923942 Escherichia coli APEC O78 14480872 YP_007380071.1 CDS dkgB NC_020163.1 929705 930508 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase B 929705..930508 Escherichia coli APEC O78 14484595 YP_007380072.1 CDS APECO78_04455 NC_020163.1 930505 931419 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(930505..931419) Escherichia coli APEC O78 14480874 YP_007380073.1 CDS APECO78_04460 NC_020163.1 931660 932460 D COG3021 Uncharacterized protein conserved in bacteria; hypothetical protein 931660..932460 Escherichia coli APEC O78 14480875 YP_007380074.1 CDS APECO78_04465 NC_020163.1 932538 933308 D COG0500 SAM-dependent methyltransferases; putative methyltransferase 932538..933308 Escherichia coli APEC O78 14480876 YP_007380075.1 CDS APECO78_04470 NC_020163.1 933356 934714 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); membrane-bound lytic murein transglycosylase D complement(933356..934714) Escherichia coli APEC O78 14480877 YP_007380076.1 CDS APECO78_04475 NC_020163.1 934786 935541 R COG0491 Zn-dependent hydrolases, including glyoxylases; hydroxyacylglutathione hydrolase complement(934786..935541) Escherichia coli APEC O78 14480878 YP_007380077.1 CDS APECO78_04480 NC_020163.1 935575 936297 D COG0500 SAM-dependent methyltransferases; hypothetical protein 935575..936297 Escherichia coli APEC O78 14480879 YP_007380078.1 CDS APECO78_04485 NC_020163.1 936294 936761 R COG0328 Ribonuclease HI; RNase HI complement(936294..936761) Escherichia coli APEC O78 14480880 YP_007380079.1 CDS APECO78_04490 NC_020163.1 936826 937557 D COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III, epsilon subunit-related 3-5 exonuclease 936826..937557 Escherichia coli APEC O78 14480881 YP_007380080.1 CDS APECO78_04495 NC_020163.1 938094 938879 D aminopeptidase 938094..938879 Escherichia coli APEC O78 14484596 YP_007380081.1 CDS APECO78_04500 NC_020163.1 939016 939495 R hypothetical protein complement(939016..939495) Escherichia coli APEC O78 14480883 YP_007380082.1 CDS APECO78_04505 NC_020163.1 939505 940419 R hypothetical protein complement(939505..940419) Escherichia coli APEC O78 14480884 YP_007380083.1 CDS APECO78_04510 NC_020163.1 940463 940945 R COG3157 Hemolysin-coregulated protein (uncharacterized); Hcp-like protein complement(940463..940945) Escherichia coli APEC O78 14480885 YP_007380084.1 CDS APECO78_04515 NC_020163.1 940969 941124 R hypothetical protein complement(940969..941124) Escherichia coli APEC O78 14480886 YP_007380085.1 CDS APECO78_04520 NC_020163.1 941343 943979 D COG3209 Rhs family protein; putative protein rhsD 941343..943979 Escherichia coli APEC O78 14480887 YP_007380086.1 CDS APECO78_04525 NC_020163.1 943994 944440 D hypothetical protein 943994..944440 Escherichia coli APEC O78 14480888 YP_007380087.1 CDS APECO78_04530 NC_020163.1 944794 945837 D COG5433 Transposase; transposase 944794..945837 Escherichia coli APEC O78 14480889 YP_007380088.1 CDS APECO78_04535 NC_020163.1 945879 946649 R COG0388 Predicted amidohydrolase; C-N hydrolase family amidase complement(945879..946649) Escherichia coli APEC O78 14480890 YP_007380089.1 CDS APECO78_04540 NC_020163.1 946803 947276 D C-lysozyme inhibitor 946803..947276 Escherichia coli APEC O78 14480891 YP_007380090.1 CDS fadE NC_020163.1 947319 949763 R COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase complement(947319..949763) Escherichia coli APEC O78 14480892 YP_007380091.1 CDS APECO78_04550 NC_020163.1 950003 950581 D COG0279 Phosphoheptose isomerase; phosphoheptose isomerase 950003..950581 Escherichia coli APEC O78 14480893 YP_007380092.1 CDS APECO78_04555 NC_020163.1 950787 951554 D COG0121 Predicted glutamine amidotransferase; amidotransferase 950787..951554 Escherichia coli APEC O78 14480894 YP_007380093.1 CDS APECO78_04560 NC_020163.1 951525 952265 R COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein complement(951525..952265) Escherichia coli APEC O78 14480895 YP_007380094.1 CDS APECO78_04565 NC_020163.1 952566 953315 D COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein 952566..953315 Escherichia coli APEC O78 14480896 YP_007380095.1 CDS APECO78_04570 NC_020163.1 953491 953988 D COG1943 Transposase and inactivated derivatives; hypothetical protein 953491..953988 Escherichia coli APEC O78 14480897 YP_007380096.1 CDS APECO78_04575 NC_020163.1 954130 954252 D Mannitol-1-phosphate 5-dehydrogenase 954130..954252 Escherichia coli APEC O78 14480898 YP_007380097.1 CDS APECO78_04580 NC_020163.1 954306 956045 R COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA complement(954306..956045) Escherichia coli APEC O78 14480899 YP_007380098.1 CDS APECO78_04585 NC_020163.1 955990 956775 D COG1360 Flagellar motor protein; hypothetical protein 955990..956775 Escherichia coli APEC O78 14480900 YP_007380099.1 CDS APECO78_04590 NC_020163.1 956846 957901 D COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase IV 956846..957901 Escherichia coli APEC O78 14480901 YP_007380100.1 CDS APECO78_04595 NC_020163.1 957898 958350 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acyltransferase 957898..958350 Escherichia coli APEC O78 14480902 YP_007380101.1 CDS APECO78_04600 NC_020163.1 958657 958923 D COG1690 Uncharacterized conserved protein; hypothetical protein 958657..958923 Escherichia coli APEC O78 14480903 YP_007380102.1 CDS APECO78_04605 NC_020163.1 958892 959089 D COG1186 Protein chain release factor B; peptide chain release factor-like protein 958892..959089 Escherichia coli APEC O78 14480904 YP_007380103.1 CDS prfH NC_020163.1 958966 959223 D COG1186 Protein chain release factor B; peptide chain release factor-like protein 958966..959223 Escherichia coli APEC O78 14480905 YP_007380104.1 CDS APECO78_04615 NC_020163.1 959280 960737 R COG2195 Di- and tripeptidases; aminoacyl-histidine dipeptidase complement(959280..960737) Escherichia coli APEC O78 14480906 YP_007380105.1 CDS APECO78_04620 NC_020163.1 960998 961456 D COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; xanthine-guanine phosphoribosyltransferase 960998..961456 Escherichia coli APEC O78 14480907 YP_007380106.1 CDS frsA NC_020163.1 961548 962792 D COG1073 Hydrolases of the alpha/beta superfamily; fermentation/respiration switch protein 961548..962792 Escherichia coli APEC O78 14480908 YP_007380107.1 CDS APECO78_04630 NC_020163.1 962850 963182 D DNA-binding transcriptional regulator Crl 962850..963182 Escherichia coli APEC O78 14480909 YP_007380108.1 CDS APECO78_04635 NC_020163.1 963289 964344 R COG3203 Outer membrane protein (porin); outer membrane phosphoporin protein E complement(963289..964344) Escherichia coli APEC O78 14480910 YP_007380109.1 CDS APECO78_04640 NC_020163.1 964632 965735 D COG0263 Glutamate 5-kinase; gamma-glutamyl kinase 964632..965735 Escherichia coli APEC O78 14480911 YP_007380110.1 CDS proA NC_020163.1 965747 967000 D COG0014 Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 965747..967000 Escherichia coli APEC O78 14480912 YP_007380111.1 CDS APECO78_04650 NC_020163.1 967205 968368 R COG0582 Integrase; hypothetical protein complement(967205..968368) Escherichia coli APEC O78 14484597 YP_007380112.1 CDS APECO78_04655 NC_020163.1 968595 968900 R hypothetical protein complement(968595..968900) Escherichia coli APEC O78 14480914 YP_007380113.1 CDS APECO78_04660 NC_020163.1 968900 969262 R hypothetical protein complement(968900..969262) Escherichia coli APEC O78 14480915 YP_007380114.1 CDS APECO78_04665 NC_020163.1 969253 969789 R COG1896 Predicted hydrolases of HD superfamily; hypothetical protein complement(969253..969789) Escherichia coli APEC O78 14480916 YP_007380115.1 CDS APECO78_04670 NC_020163.1 969917 970741 R COG5532 Uncharacterized conserved protein; hypothetical protein complement(969917..970741) Escherichia coli APEC O78 14480917 YP_007380116.1 CDS APECO78_04675 NC_020163.1 970806 971168 R hypothetical protein complement(970806..971168) Escherichia coli APEC O78 14480918 YP_007380117.1 CDS APECO78_04680 NC_020163.1 971376 971465 D hypothetical protein 971376..971465 Escherichia coli APEC O78 14480919 YP_007380118.1 CDS APECO78_04685 NC_020163.1 971637 972071 D hypothetical protein 971637..972071 Escherichia coli APEC O78 14480920 YP_007380119.1 CDS APECO78_04690 NC_020163.1 972043 972249 R hypothetical protein complement(972043..972249) Escherichia coli APEC O78 14480921 YP_007380120.1 CDS APECO78_04695 NC_020163.1 972497 973123 R COG1396 Predicted transcriptional regulators; Repressor protein C2 complement(972497..973123) Escherichia coli APEC O78 14480922 YP_007380121.1 CDS APECO78_04700 NC_020163.1 973221 973421 D hypothetical protein 973221..973421 Escherichia coli APEC O78 14480923 YP_007380122.1 CDS APECO78_04705 NC_020163.1 973459 974010 D hypothetical protein 973459..974010 Escherichia coli APEC O78 14480924 YP_007380123.1 CDS APECO78_04710 NC_020163.1 974186 974365 D hypothetical protein 974186..974365 Escherichia coli APEC O78 14480925 YP_007380124.1 CDS APECO78_04715 NC_020163.1 974355 975296 D phage replication protein O 974355..975296 Escherichia coli APEC O78 14480926 YP_007380125.1 CDS APECO78_04720 NC_020163.1 975299 975787 D hypothetical protein 975299..975787 Escherichia coli APEC O78 14480927 YP_007380126.1 CDS APECO78_04725 NC_020163.1 975787 976440 D phage AdoMet-dependent methyltransferase 975787..976440 Escherichia coli APEC O78 14480928 YP_007380127.1 CDS APECO78_04730 NC_020163.1 976437 976763 D COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein 976437..976763 Escherichia coli APEC O78 14480929 YP_007380128.1 CDS APECO78_04735 NC_020163.1 976760 977149 D COG4570 Holliday junction resolvase; crossover junction endodeoxyribonuclease (holliday junction resolvase) 976760..977149 Escherichia coli APEC O78 14480930 YP_007380129.1 CDS APECO78_04740 NC_020163.1 977169 977978 D phage protein 977169..977978 Escherichia coli APEC O78 14480931 YP_007380130.1 CDS APECO78_04745 NC_020163.1 977980 978975 D hypothetical protein 977980..978975 Escherichia coli APEC O78 14480932 YP_007380131.1 CDS APECO78_04750 NC_020163.1 978993 979358 D putative phage antiterminator 978993..979358 Escherichia coli APEC O78 14480933 YP_007380132.1 CDS APECO78_04755 NC_020163.1 979394 979843 R hypothetical protein complement(979394..979843) Escherichia coli APEC O78 14480934 YP_007380133.1 CDS APECO78_04760 NC_020163.1 979865 980806 R hypothetical protein complement(979865..980806) Escherichia coli APEC O78 14480935 YP_007380134.1 CDS APECO78_04765 NC_020163.1 980836 981030 D hypothetical protein 980836..981030 Escherichia coli APEC O78 14480936 YP_007380135.1 CDS APECO78_04770 NC_020163.1 981074 981277 D hypothetical protein 981074..981277 Escherichia coli APEC O78 14480937 YP_007380136.1 CDS APECO78_04775 NC_020163.1 981428 982480 D COG0863 DNA modification methylase; putative methyltransferase 981428..982480 Escherichia coli APEC O78 14480938 YP_007380137.1 CDS APECO78_04780 NC_020163.1 982461 982883 D putative transmembrane phage holin 982461..982883 Escherichia coli APEC O78 14480939 YP_007380138.1 CDS APECO78_04785 NC_020163.1 982887 983363 D COG4678 Muramidase (phage lambda lysozyme); phage lysozyme 982887..983363 Escherichia coli APEC O78 14480940 YP_007380139.1 CDS APECO78_04790 NC_020163.1 984453 984803 D COG1403 Restriction endonuclease; phage protein 984453..984803 Escherichia coli APEC O78 14480941 YP_007380140.1 CDS APECO78_04795 NC_020163.1 984929 985423 D COG3747 Phage terminase, small subunit; phage terminase small subunit 984929..985423 Escherichia coli APEC O78 14480942 YP_007380141.1 CDS APECO78_04800 NC_020163.1 985420 987153 D COG4626 Phage terminase-like protein, large subunit; phage terminase, large subunit 985420..987153 Escherichia coli APEC O78 14480943 YP_007380142.1 CDS APECO78_04805 NC_020163.1 987165 987347 D hypothetical protein 987165..987347 Escherichia coli APEC O78 14480944 YP_007380143.1 CDS APECO78_04810 NC_020163.1 987347 988588 D COG4695 Phage-related protein; phage portal protein 987347..988588 Escherichia coli APEC O78 14480945 YP_007380144.1 CDS APECO78_04815 NC_020163.1 988530 989216 D COG3740 Phage head maturation protease; phage pro-head protease 988530..989216 Escherichia coli APEC O78 14480946 YP_007380145.1 CDS APECO78_04820 NC_020163.1 989231 990436 D COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; putative major capsid protein 989231..990436 Escherichia coli APEC O78 14480947 YP_007380146.1 CDS APECO78_04825 NC_020163.1 990486 990686 D hypothetical protein 990486..990686 Escherichia coli APEC O78 14480948 YP_007380147.1 CDS APECO78_04830 NC_020163.1 990689 991012 D phage protein 990689..991012 Escherichia coli APEC O78 14480949 YP_007380148.1 CDS APECO78_04835 NC_020163.1 991009 991419 D COG5614 Bacteriophage head-tail adaptor; bacteriophage protein 991009..991419 Escherichia coli APEC O78 14480950 YP_007380149.1 CDS APECO78_04840 NC_020163.1 991394 991900 D prophage protein 991394..991900 Escherichia coli APEC O78 14480951 YP_007380150.1 CDS APECO78_04845 NC_020163.1 991897 992457 D hypothetical protein 991897..992457 Escherichia coli APEC O78 14480952 YP_007380151.1 CDS APECO78_04850 NC_020163.1 992466 992636 D hypothetical protein 992466..992636 Escherichia coli APEC O78 14480953 YP_007380152.1 CDS APECO78_04855 NC_020163.1 992620 994116 D COG4386 Mu-like prophage tail sheath protein gpL; sheath protein 992620..994116 Escherichia coli APEC O78 14480954 YP_007380153.1 CDS APECO78_04860 NC_020163.1 994116 994472 D phage protein 994116..994472 Escherichia coli APEC O78 14480955 YP_007380154.1 CDS APECO78_04865 NC_020163.1 994472 994741 D phage protein 994472..994741 Escherichia coli APEC O78 14480956 YP_007380155.1 CDS APECO78_04870 NC_020163.1 994883 996718 D tail protein 994883..996718 Escherichia coli APEC O78 14480957 YP_007380156.1 CDS APECO78_04875 NC_020163.1 996779 998107 D COG4228 Mu-like prophage DNA circulation protein; tail/DNA circulation protein 996779..998107 Escherichia coli APEC O78 14480958 YP_007380157.1 CDS APECO78_04880 NC_020163.1 998104 999183 D COG4379 Mu-like prophage tail protein gpP; putative phage tail protein 998104..999183 Escherichia coli APEC O78 14480959 YP_007380158.1 CDS APECO78_04885 NC_020163.1 999183 999731 D COG4384 Mu-like prophage protein gp45; putative phage tail protein 999183..999731 Escherichia coli APEC O78 14480960 YP_007380159.1 CDS APECO78_04890 NC_020163.1 999728 1000156 D COG4381 Mu-like prophage protein gp46; putative phage tail protein 999728..1000156 Escherichia coli APEC O78 14480961 YP_007380160.1 CDS APECO78_04895 NC_020163.1 1000143 1001201 D COG3299 Uncharacterized homolog of phage Mu protein gp47; putative tail protein 1000143..1001201 Escherichia coli APEC O78 14480962 YP_007380161.1 CDS APECO78_04900 NC_020163.1 1001192 1001776 D COG3778 Uncharacterized protein conserved in bacteria; putative tail protein 1001192..1001776 Escherichia coli APEC O78 14480963 YP_007380162.1 CDS APECO78_04905 NC_020163.1 1001780 1002541 D putative tail fiber/collar phage protein 1001780..1002541 Escherichia coli APEC O78 14480964 YP_007380163.1 CDS APECO78_04910 NC_020163.1 1002538 1003143 D tail fiber assembly 1002538..1003143 Escherichia coli APEC O78 14480965 YP_007380164.1 CDS APECO78_04915 NC_020163.1 1003707 1004216 R variable tail fiber protein complement(1003707..1004216) Escherichia coli APEC O78 14480966 YP_007380165.1 CDS APECO78_04920 NC_020163.1 1004246 1004800 D COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA-invertase 1004246..1004800 Escherichia coli APEC O78 14480967 YP_007380166.1 CDS APECO78_04925 NC_020163.1 1005143 1005640 R hypothetical protein complement(1005143..1005640) Escherichia coli APEC O78 14480968 YP_007380167.1 CDS APECO78_04930 NC_020163.1 1006029 1006133 D hypothetical protein 1006029..1006133 Escherichia coli APEC O78 14480969 YP_007380168.1 CDS APECO78_04935 NC_020163.1 1006240 1008993 R COG0613 Predicted metal-dependent phosphoesterases (PHP family); hypothetical protein complement(1006240..1008993) Escherichia coli APEC O78 14480970 YP_007380169.1 CDS APECO78_04940 NC_020163.1 1009528 1009938 R COG0583 Transcriptional regulator; putative transcriptional regulator complement(1009528..1009938) Escherichia coli APEC O78 14480971 YP_007380170.1 CDS APECO78_04945 NC_020163.1 1009917 1010873 R COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; hypothetical protein complement(1009917..1010873) Escherichia coli APEC O78 14480972 YP_007380171.1 CDS APECO78_04950 NC_020163.1 1010883 1013081 R COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; oxidoreductase with molybdenum-binding domain complement(1010883..1013081) Escherichia coli APEC O78 14480973 YP_007380172.1 CDS APECO78_04955 NC_020163.1 1013078 1014034 R COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; oxidoreductase complement(1013078..1014034) Escherichia coli APEC O78 14480974 YP_007380173.1 CDS APECO78_04960 NC_020163.1 1014031 1014720 R COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; aldehyde oxidoreductase 2Fe-2S subunit complement(1014031..1014720) Escherichia coli APEC O78 14480975 YP_007380174.1 CDS APECO78_04965 NC_020163.1 1015138 1015752 D COG3477 Predicted periplasmic/secreted protein; hypothetical protein 1015138..1015752 Escherichia coli APEC O78 14480976 YP_007380175.1 CDS APECO78_04970 NC_020163.1 1016000 1016329 R COG0727 Predicted Fe-S-cluster oxidoreductase; ferredoxin complement(1016000..1016329) Escherichia coli APEC O78 14480977 YP_007380176.1 CDS APECO78_04975 NC_020163.1 1016642 1017352 R hypothetical protein complement(1016642..1017352) Escherichia coli APEC O78 14480978 YP_007380177.1 CDS APECO78_04980 NC_020163.1 1017321 1018964 R hypothetical protein complement(1017321..1018964) Escherichia coli APEC O78 14480979 YP_007380178.1 CDS APECO78_04985 NC_020163.1 1018954 1021479 R hypothetical protein complement(1018954..1021479) Escherichia coli APEC O78 14480980 YP_007380179.1 CDS APECO78_04990 NC_020163.1 1021491 1022159 R chaperone complement(1021491..1022159) Escherichia coli APEC O78 14480981 YP_007380180.1 CDS APECO78_04995 NC_020163.1 1022217 1022804 R common pilus ECP complement(1022217..1022804) Escherichia coli APEC O78 14480982 YP_007380181.1 CDS APECO78_05000 NC_020163.1 1022879 1023469 R COG2771 DNA-binding HTH domain-containing proteins; transcriptional regulator complement(1022879..1023469) Escherichia coli APEC O78 14480983 YP_007380182.1 CDS APECO78_05005 NC_020163.1 1024244 1024471 D hypothetical protein 1024244..1024471 Escherichia coli APEC O78 14480984 YP_007380183.1 CDS APECO78_05010 NC_020163.1 1024506 1024646 R COG0257 Ribosomal protein L36; 50S ribosomal protein L36 complement(1024506..1024646) Escherichia coli APEC O78 14480985 YP_007380184.1 CDS rpmE2 NC_020163.1 1024646 1024909 R COG0254 Ribosomal protein L31; 50S ribosomal protein L31 type B complement(1024646..1024909) Escherichia coli APEC O78 14480986 YP_007380185.1 CDS APECO78_05020 NC_020163.1 1025273 1025374 R hypothetical protein complement(1025273..1025374) Escherichia coli APEC O78 14480987 YP_007380186.1 CDS APECO78_05025 NC_020163.1 1025499 1025618 R hypothetical protein complement(1025499..1025618) Escherichia coli APEC O78 14480988 YP_007380187.1 CDS APECO78_05030 NC_020163.1 1026489 1030739 D putative adhesin/invasin 1026489..1030739 Escherichia coli APEC O78 14480989 YP_007380188.1 CDS APECO78_05035 NC_020163.1 1030879 1031730 R COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator, AraC family protein complement(1030879..1031730) Escherichia coli APEC O78 14480990 YP_007380189.1 CDS APECO78_05040 NC_020163.1 1032321 1032914 R COG3059 Predicted membrane protein; hypothetical protein complement(1032321..1032914) Escherichia coli APEC O78 14480991 YP_007380190.1 CDS APECO78_05045 NC_020163.1 1032926 1033162 R hypothetical protein complement(1032926..1033162) Escherichia coli APEC O78 14480992 YP_007380191.1 CDS APECO78_05050 NC_020163.1 1033271 1034596 R COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; pyridine nucleotide-disulfide oxidoreductase complement(1033271..1034596) Escherichia coli APEC O78 14480993 YP_007380192.1 CDS APECO78_05055 NC_020163.1 1034822 1035676 D COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator, ARAC-type 1034822..1035676 Escherichia coli APEC O78 14480994 YP_007380193.1 CDS APECO78_05060 NC_020163.1 1036204 1036923 D COG0247 Fe-S oxidoreductase; oxidoreductase 1036204..1036923 Escherichia coli APEC O78 14480995 YP_007380194.1 CDS APECO78_05065 NC_020163.1 1036934 1038361 D COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain; electron transport protein with ferredoxin-like domai 1036934..1038361 Escherichia coli APEC O78 14480996 YP_007380195.1 CDS APECO78_05070 NC_020163.1 1038354 1039049 D COG1556 Uncharacterized conserved protein; transporter 1038354..1039049 Escherichia coli APEC O78 14480997 YP_007380196.1 CDS APECO78_05075 NC_020163.1 1039292 1039960 R inner membrane protein complement(1039292..1039960) Escherichia coli APEC O78 14480998 YP_007380197.1 CDS APECO78_05080 NC_020163.1 1040173 1041843 R COG2303 Choline dehydrogenase and related flavoproteins; choline dehydrogenase complement(1040173..1041843) Escherichia coli APEC O78 14480999 YP_007380198.1 CDS APECO78_05085 NC_020163.1 1041857 1043329 R COG1012 NAD-dependent aldehyde dehydrogenases; betaine aldehyde dehydrogenase complement(1041857..1043329) Escherichia coli APEC O78 14481000 YP_007380199.1 CDS APECO78_05090 NC_020163.1 1043343 1043930 R COG1309 Transcriptional regulator; transcriptional regulator BetI complement(1043343..1043930) Escherichia coli APEC O78 14481001 YP_007380200.1 CDS APECO78_05095 NC_020163.1 1044059 1046092 D COG1292 Choline-glycine betaine transporter; choline transport protein BetT 1044059..1046092 Escherichia coli APEC O78 14481002 YP_007380201.1 CDS APECO78_05110 NC_020163.1 1048097 1049029 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(1048097..1049029) Escherichia coli APEC O78 14481003 YP_007380202.1 CDS APECO78_05115 NC_020163.1 1049121 1049618 R hypothetical protein complement(1049121..1049618) Escherichia coli APEC O78 14481004 YP_007380203.1 CDS APECO78_05120 NC_020163.1 1049876 1050481 D COG0666 FOG: Ankyrin repeat; putative transcription factor 1049876..1050481 Escherichia coli APEC O78 14481005 YP_007380204.1 CDS APECO78_05125 NC_020163.1 1050521 1051384 D COG0097 Ribosomal protein L6P/L9E; hypothetical protein 1050521..1051384 Escherichia coli APEC O78 14481006 YP_007380205.1 CDS APECO78_05130 NC_020163.1 1051374 1052921 D COG0074 Succinyl-CoA synthetase, alpha subunit; acyl-CoA synthetase 1051374..1052921 Escherichia coli APEC O78 14481007 YP_007380206.1 CDS APECO78_05135 NC_020163.1 1052921 1054339 D hypothetical protein 1052921..1054339 Escherichia coli APEC O78 14481008 YP_007380207.1 CDS APECO78_05140 NC_020163.1 1054482 1055432 D COG0549 Carbamate kinase; carbamate kinase 1054482..1055432 Escherichia coli APEC O78 14481009 YP_007380208.1 CDS APECO78_05145 NC_020163.1 1055442 1056824 D COG0402 Cytosine deaminase and related metal-dependent hydrolases; deaminase 1055442..1056824 Escherichia coli APEC O78 14481010 YP_007380209.1 CDS APECO78_05150 NC_020163.1 1057201 1058250 D COG1064 Zn-dependent alcohol dehydrogenases; putative oxidoreductase 1057201..1058250 Escherichia coli APEC O78 14481011 YP_007380210.1 CDS APECO78_05155 NC_020163.1 1058493 1059308 D hypothetical protein 1058493..1059308 Escherichia coli APEC O78 14481012 YP_007380211.1 CDS APECO78_05160 NC_020163.1 1059720 1059965 D hypothetical protein 1059720..1059965 Escherichia coli APEC O78 14484598 YP_007380212.1 CDS APECO78_05165 NC_020163.1 1059982 1060614 R COG1280 Putative threonine efflux protein; neutral amino-acid efflux system complement(1059982..1060614) Escherichia coli APEC O78 14481014 YP_007380213.1 CDS APECO78_05170 NC_020163.1 1060800 1061075 D hypothetical protein 1060800..1061075 Escherichia coli APEC O78 14481015 YP_007380214.1 CDS APECO78_05175 NC_020163.1 1061173 1062759 R COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; propionate catabolism operon regulatory protein PrpR complement(1061173..1062759) Escherichia coli APEC O78 14481016 YP_007380215.1 CDS prpB NC_020163.1 1062997 1063887 D COG2513 PEP phosphonomutase and related enzymes; 2-methylisocitrate lyase 1062997..1063887 Escherichia coli APEC O78 14481017 YP_007380216.1 CDS APECO78_05185 NC_020163.1 1063932 1065101 D COG0372 Citrate synthase; methylcitrate synthase 1063932..1065101 Escherichia coli APEC O78 14481018 YP_007380217.1 CDS prpD NC_020163.1 1065135 1066586 D COG2079 Uncharacterized protein involved in propionate catabolism; 2-methylcitrate dehydratase 1065135..1066586 Escherichia coli APEC O78 14481019 YP_007380218.1 CDS prpE NC_020163.1 1066626 1068416 D COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; propionyl-CoA synthetase 1066626..1068416 Escherichia coli APEC O78 14481020 YP_007380219.1 CDS codB NC_020163.1 1068794 1070053 D COG1457 Purine-cytosine permease and related proteins; cytosine permease 1068794..1070053 Escherichia coli APEC O78 14481021 YP_007380220.1 CDS APECO78_05205 NC_020163.1 1070043 1071326 D COG0402 Cytosine deaminase and related metal-dependent hydrolases; cytosine deaminase 1070043..1071326 Escherichia coli APEC O78 14481022 YP_007380221.1 CDS APECO78_05210 NC_020163.1 1071366 1072265 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator CynR complement(1071366..1072265) Escherichia coli APEC O78 14481023 YP_007380222.1 CDS APECO78_05215 NC_020163.1 1072375 1073034 D COG0288 Carbonic anhydrase; carbonate dehydratase 1072375..1073034 Escherichia coli APEC O78 14481024 YP_007380223.1 CDS APECO78_05220 NC_020163.1 1073065 1073535 D COG1513 Cyanate lyase; cyanate hydratase 1073065..1073535 Escherichia coli APEC O78 14481025 YP_007380224.1 CDS cynX NC_020163.1 1073541 1074722 D COG2807 Cyanate permease; cyanate transporter 1073541..1074722 Escherichia coli APEC O78 14481026 YP_007380225.1 CDS lacA NC_020163.1 1074825 1075436 R COG0110 Acetyltransferase (isoleucine patch superfamily); galactoside O-acetyltransferase complement(1074825..1075436) Escherichia coli APEC O78 14481027 YP_007380226.1 CDS APECO78_05235 NC_020163.1 1075502 1076755 R COG0477 Permeases of the major facilitator superfamily; LacY lactose MFS transporter complement(1075502..1076755) Escherichia coli APEC O78 14481028 YP_007380227.1 CDS APECO78_05240 NC_020163.1 1076807 1079881 R COG3250 Beta-galactosidase/beta-glucuronidase; beta-D-galactosidase complement(1076807..1079881) Escherichia coli APEC O78 14481029 YP_007380228.1 CDS lacI NC_020163.1 1080004 1081086 R COG1609 Transcriptional regulators; lac repressor complement(1080004..1081086) Escherichia coli APEC O78 14481030 YP_007380229.1 CDS APECO78_05250 NC_020163.1 1081163 1082110 R COG1414 Transcriptional regulator; DNA-binding transcriptional activator MhpR complement(1081163..1082110) Escherichia coli APEC O78 14481031 YP_007380230.1 CDS APECO78_05255 NC_020163.1 1082187 1083851 D COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 3-(3-hydroxyphenyl)propionate hydroxylase 1082187..1083851 Escherichia coli APEC O78 14481032 YP_007380231.1 CDS mhpB NC_020163.1 1083853 1084797 D 3-(2,3-dihydroxyphenyl)propionate dioxygenase 1083853..1084797 Escherichia coli APEC O78 14481033 YP_007380232.1 CDS APECO78_05265 NC_020163.1 1084800 1085681 D COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase 1084800..1085681 Escherichia coli APEC O78 14481034 YP_007380233.1 CDS mhpD NC_020163.1 1085691 1086500 D COG3971 2-keto-4-pentenoate hydratase; 2-keto-4-pentenoate hydratase 1085691..1086500 Escherichia coli APEC O78 14481035 YP_007380234.1 CDS APECO78_05275 NC_020163.1 1086497 1087447 D COG4569 Acetaldehyde dehydrogenase (acetylating); acetaldehyde dehydrogenase 1086497..1087447 Escherichia coli APEC O78 14481036 YP_007380235.1 CDS APECO78_05280 NC_020163.1 1087444 1088457 D COG0119 Isopropylmalate/homocitrate/citramalate synthases; 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase 1087444..1088457 Escherichia coli APEC O78 14481037 YP_007380236.1 CDS APECO78_05285 NC_020163.1 1088633 1089844 D COG0477 Permeases of the major facilitator superfamily; 3-hydroxyphenylpropionic transporter MhpT 1088633..1089844 Escherichia coli APEC O78 14481038 YP_007380237.1 CDS APECO78_05290 NC_020163.1 1089946 1090485 D COG3122 Uncharacterized protein conserved in bacteria; nucleoprotein/polynucleotide-associated enzyme 1089946..1090485 Escherichia coli APEC O78 14481039 YP_007380238.1 CDS APECO78_05295 NC_020163.1 1090610 1091443 R COG0627 Predicted esterase; S-formylglutathione hydrolase complement(1090610..1091443) Escherichia coli APEC O78 14481040 YP_007380239.1 CDS APECO78_05300 NC_020163.1 1091536 1092645 R COG1062 Zn-dependent alcohol dehydrogenases, class III; S-(hydroxymethyl)glutathione dehydrogenase complement(1091536..1092645) Escherichia coli APEC O78 14481041 YP_007380240.1 CDS APECO78_05305 NC_020163.1 1092680 1092955 R COG1937 Uncharacterized protein conserved in bacteria; regulator protein FrmR complement(1092680..1092955) Escherichia coli APEC O78 14481042 YP_007380241.1 CDS APECO78_05310 NC_020163.1 1093140 1093913 R hypothetical protein complement(1093140..1093913) Escherichia coli APEC O78 14481043 YP_007380242.1 CDS APECO78_05315 NC_020163.1 1093915 1094355 R COG0110 Acetyltransferase (isoleucine patch superfamily); transferase complement(1093915..1094355) Escherichia coli APEC O78 14481044 YP_007380243.1 CDS APECO78_05320 NC_020163.1 1094474 1095670 R COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; glucosyltransferase complement(1094474..1095670) Escherichia coli APEC O78 14481045 YP_007380244.1 CDS APECO78_05325 NC_020163.1 1095680 1096351 R COG2120 Uncharacterized proteins, LmbE homologs; hypothetical protein complement(1095680..1096351) Escherichia coli APEC O78 14481046 YP_007380245.1 CDS tauA NC_020163.1 1096967 1097929 D COG4521 ABC-type taurine transport system, periplasmic component; taurine transporter substrate binding subunit 1096967..1097929 Escherichia coli APEC O78 14481047 YP_007380246.1 CDS tauB NC_020163.1 1097942 1098709 D COG4525 ABC-type taurine transport system, ATPase component; taurine transporter ATP-binding subunit 1097942..1098709 Escherichia coli APEC O78 14481048 YP_007380247.1 CDS APECO78_05340 NC_020163.1 1098706 1099533 D COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; taurine transporter subunit 1098706..1099533 Escherichia coli APEC O78 14481049 YP_007380248.1 CDS APECO78_05345 NC_020163.1 1099530 1100381 D COG2175 Probable taurine catabolism dioxygenase; taurine dioxygenase 1099530..1100381 Escherichia coli APEC O78 14481050 YP_007380249.1 CDS APECO78_05350 NC_020163.1 1100487 1101461 R COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase complement(1100487..1101461) Escherichia coli APEC O78 14481051 YP_007380250.1 CDS APECO78_05355 NC_020163.1 1102283 1103188 R COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB complement(1102283..1103188) Escherichia coli APEC O78 14481052 YP_007380251.1 CDS APECO78_05360 NC_020163.1 1103146 1103511 R COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA complement(1103146..1103511) Escherichia coli APEC O78 14481053 YP_007380252.1 CDS APECO78_05365 NC_020163.1 1103627 1105939 D flagellar protein 1103627..1105939 Escherichia coli APEC O78 14481054 YP_007380253.1 CDS APECO78_05370 NC_020163.1 1105952 1106272 D COG3468 Type V secretory pathway, adhesin AidA; Putative flagellin structural protein ; putative exported protein 1105952..1106272 Escherichia coli APEC O78 14481055 YP_007380254.1 CDS APECO78_05375 NC_020163.1 1106360 1106983 D COG2186 Transcriptional regulators; DNA-binding transcriptional regulator 1106360..1106983 Escherichia coli APEC O78 14481056 YP_007380255.1 CDS APECO78_05380 NC_020163.1 1106984 1108141 R COG1680 Beta-lactamase class C and other penicillin binding proteins; beta-lactam binding protein AmpH complement(1106984..1108141) Escherichia coli APEC O78 14481057 YP_007380256.1 CDS APECO78_05385 NC_020163.1 1108493 1109713 D COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components; microcin B17 transporter 1108493..1109713 Escherichia coli APEC O78 14481058 YP_007380257.1 CDS APECO78_05390 NC_020163.1 1109726 1110820 D DNA-binding transcriptional regulator 1109726..1110820 Escherichia coli APEC O78 14481059 YP_007380258.1 CDS APECO78_05395 NC_020163.1 1110879 1111187 R hypothetical protein complement(1110879..1111187) Escherichia coli APEC O78 14481060 YP_007380259.1 CDS APECO78_05400 NC_020163.1 1111447 1111659 D hypothetical protein 1111447..1111659 Escherichia coli APEC O78 14481061 YP_007380260.1 CDS APECO78_05405 NC_020163.1 1111683 1112777 R COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanyl-alanine synthetase A complement(1111683..1112777) Escherichia coli APEC O78 14481062 YP_007380261.1 CDS APECO78_05410 NC_020163.1 1113089 1113241 R hypothetical protein complement(1113089..1113241) Escherichia coli APEC O78 14481063 YP_007380262.1 CDS APECO78_05415 NC_020163.1 1113240 1113500 D anti-RssB factor 1113240..1113500 Escherichia coli APEC O78 14481064 YP_007380263.1 CDS APECO78_05420 NC_020163.1 1113601 1115016 D COG1785 Alkaline phosphatase; alkaline phosphatase 1113601..1115016 Escherichia coli APEC O78 14481065 YP_007380264.1 CDS APECO78_05425 NC_020163.1 1115135 1115455 D hypothetical protein 1115135..1115455 Escherichia coli APEC O78 14481066 YP_007380265.1 CDS APECO78_05430 NC_020163.1 1115557 1116672 D COG2199 FOG: GGDEF domain; hypothetical protein 1115557..1116672 Escherichia coli APEC O78 14481067 YP_007380266.1 CDS APECO78_05435 NC_020163.1 1116689 1117498 R COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase complement(1116689..1117498) Escherichia coli APEC O78 14481068 YP_007380267.1 CDS APECO78_05440 NC_020163.1 1117618 1118082 D COG1671 Uncharacterized protein conserved in bacteria; hypothetical protein 1117618..1118082 Escherichia coli APEC O78 14481069 YP_007380268.1 CDS APECO78_05445 NC_020163.1 1118259 1118783 D COG0703 Shikimate kinase; shikimate kinase 1118259..1118783 Escherichia coli APEC O78 14481070 YP_007380269.1 CDS APECO78_05450 NC_020163.1 1118833 1119024 D hypothetical protein 1118833..1119024 Escherichia coli APEC O78 14481071 YP_007380270.1 CDS APECO78_05455 NC_020163.1 1119282 1119959 D hypothetical protein 1119282..1119959 Escherichia coli APEC O78 14481072 YP_007380271.1 CDS APECO78_05460 NC_020163.1 1120031 1120315 D COG3123 Uncharacterized protein conserved in bacteria; hypothetical protein 1120031..1120315 Escherichia coli APEC O78 14481073 YP_007380272.1 CDS APECO78_05465 NC_020163.1 1120483 1120602 R hypothetical protein complement(1120483..1120602) Escherichia coli APEC O78 14481074 YP_007380273.1 CDS APECO78_05470 NC_020163.1 1120524 1120805 D hypothetical protein 1120524..1120805 Escherichia coli APEC O78 14481075 YP_007380274.1 CDS APECO78_05475 NC_020163.1 1120963 1121874 R COG2974 DNA recombination-dependent growth factor C; nonspecific DNA binding protein complement(1120963..1121874) Escherichia coli APEC O78 14481076 YP_007380275.1 CDS APECO78_05480 NC_020163.1 1121999 1122907 D COG1940 Transcriptional regulator/sugar kinase; fructokinase 1121999..1122907 Escherichia coli APEC O78 14481077 YP_007380276.1 CDS APECO78_05485 NC_020163.1 1123050 1124234 R COG2814 Arabinose efflux permease; MFS transport protein AraJ complement(1123050..1124234) Escherichia coli APEC O78 14481078 YP_007380277.1 CDS APECO78_05490 NC_020163.1 1124360 1127503 R COG0419 ATPase involved in DNA repair; exonuclease subunit SbcC complement(1124360..1127503) Escherichia coli APEC O78 14481079 YP_007380278.1 CDS APECO78_05495 NC_020163.1 1127500 1128702 R COG0420 DNA repair exonuclease; Nuclease sbcCD subunit D complement(1127500..1128702) Escherichia coli APEC O78 14481080 YP_007380279.1 CDS APECO78_05500 NC_020163.1 1128892 1129581 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator PhoB 1128892..1129581 Escherichia coli APEC O78 14481081 YP_007380280.1 CDS phoR NC_020163.1 1129639 1130934 D COG0642 Signal transduction histidine kinase; phosphate regulon sensor protein 1129639..1130934 Escherichia coli APEC O78 14481082 YP_007380281.1 CDS APECO78_05510 NC_020163.1 1131341 1132660 D COG1114 Branched-chain amino acid permeases; branched chain amino acid transport system II carrier protein 1131341..1132660 Escherichia coli APEC O78 14481083 YP_007380282.1 CDS APECO78_05515 NC_020163.1 1132736 1134109 D COG1113 Gamma-aminobutyrate permease and related permeases; putative proline-specific permease 1132736..1134109 Escherichia coli APEC O78 14481084 YP_007380283.1 CDS APECO78_05520 NC_020163.1 1134265 1136082 D COG0366 Glycosidases; maltodextrin glucosidase 1134265..1136082 Escherichia coli APEC O78 14481085 YP_007380284.1 CDS APECO78_05525 NC_020163.1 1136087 1136668 R COG3124 Uncharacterized protein conserved in bacteria; acyl carrier protein phosphodiesterase complement(1136087..1136668) Escherichia coli APEC O78 14481086 YP_007380285.1 CDS APECO78_05530 NC_020163.1 1136761 1137831 D COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1136761..1137831 Escherichia coli APEC O78 14481087 YP_007380286.1 CDS APECO78_05535 NC_020163.1 1137887 1139014 D COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1137887..1139014 Escherichia coli APEC O78 14481088 YP_007380287.1 CDS APECO78_05540 NC_020163.1 1139037 1139369 D COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC 1139037..1139369 Escherichia coli APEC O78 14481089 YP_007380288.1 CDS APECO78_05545 NC_020163.1 1139397 1141244 D COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD 1139397..1141244 Escherichia coli APEC O78 14481090 YP_007380289.1 CDS APECO78_05550 NC_020163.1 1141255 1142226 D COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF 1141255..1142226 Escherichia coli APEC O78 14481091 YP_007380290.1 CDS APECO78_05555 NC_020163.1 1142355 1142702 D COG1403 Restriction endonuclease; hypothetical protein 1142355..1142702 Escherichia coli APEC O78 14481092 YP_007380291.1 CDS APECO78_05560 NC_020163.1 1142716 1142838 D hypothetical protein 1142716..1142838 Escherichia coli APEC O78 14481093 YP_007380292.1 CDS APECO78_05565 NC_020163.1 1142879 1143763 R COG3248 Nucleoside-binding outer membrane protein; nucleoside-specific channel-forming protein Tsx complement(1142879..1143763) Escherichia coli APEC O78 14481094 YP_007380293.1 CDS APECO78_05570 NC_020163.1 1144062 1144601 R hypothetical protein complement(1144062..1144601) Escherichia coli APEC O78 14481095 YP_007380294.1 CDS APECO78_05575 NC_020163.1 1144752 1145201 D COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; transcriptional regulator NrdR 1144752..1145201 Escherichia coli APEC O78 14481096 YP_007380295.1 CDS ribD NC_020163.1 1145205 1146308 D COG0117 Pyrimidine deaminase; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 1145205..1146308 Escherichia coli APEC O78 14481097 YP_007380296.1 CDS APECO78_05585 NC_020163.1 1146397 1146867 D COG0054 Riboflavin synthase beta-chain; 6,7-dimethyl-8-ribityllumazine synthase 1146397..1146867 Escherichia coli APEC O78 14481098 YP_007380297.1 CDS APECO78_05590 NC_020163.1 1146887 1147306 D COG0781 Transcription termination factor; transcription antitermination protein NusB 1146887..1147306 Escherichia coli APEC O78 14481099 YP_007380298.1 CDS APECO78_05595 NC_020163.1 1147384 1148361 D COG0611 Thiamine monophosphate kinase; thiamine monophosphate kinase 1147384..1148361 Escherichia coli APEC O78 14481100 YP_007380299.1 CDS APECO78_05600 NC_020163.1 1148339 1148857 D COG1267 Phosphatidylglycerophosphatase A and related proteins; phosphatidylglycerophosphatase A 1148339..1148857 Escherichia coli APEC O78 14481101 YP_007380300.1 CDS APECO78_05605 NC_020163.1 1148911 1149885 R COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); oxidoreductase, NAD(P)-binding protein complement(1148911..1149885) Escherichia coli APEC O78 14481102 YP_007380301.1 CDS APECO78_05610 NC_020163.1 1150065 1151927 R COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase complement(1150065..1151927) Escherichia coli APEC O78 14481103 YP_007380302.1 CDS APECO78_05615 NC_020163.1 1151952 1152851 R COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase complement(1151952..1152851) Escherichia coli APEC O78 14481104 YP_007380303.1 CDS APECO78_05620 NC_020163.1 1152851 1153093 R COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit complement(1152851..1153093) Escherichia coli APEC O78 14481105 YP_007380304.1 CDS APECO78_05625 NC_020163.1 1153299 1154747 D COG0301 Thiamine biosynthesis ATP pyrophosphatase; tRNA s(4)U8 sulfurtransferase 1153299..1154747 Escherichia coli APEC O78 14481106 YP_007380305.1 CDS APECO78_05630 NC_020163.1 1154801 1155391 R COG0693 Putative intracellular protease/amidase; hypothetical protein complement(1154801..1155391) Escherichia coli APEC O78 14481107 YP_007380306.1 CDS APECO78_05635 NC_020163.1 1155354 1156265 R COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase complement(1155354..1156265) Escherichia coli APEC O78 14481108 YP_007380307.1 CDS APECO78_05640 NC_020163.1 1156433 1156924 D COG1666 Uncharacterized protein conserved in bacteria; putative nucleotide-binding protein 1156433..1156924 Escherichia coli APEC O78 14481109 YP_007380308.1 CDS APECO78_05645 NC_020163.1 1157052 1158416 R COG0477 Permeases of the major facilitator superfamily; transporter complement(1157052..1158416) Escherichia coli APEC O78 14481110 YP_007380309.1 CDS APECO78_05650 NC_020163.1 1158565 1159455 R COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); protoheme IX farnesyltransferase complement(1158565..1159455) Escherichia coli APEC O78 14481111 YP_007380310.1 CDS APECO78_05655 NC_020163.1 1159467 1159796 R COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4; cytochrome o ubiquinol oxidase subunit IV complement(1159467..1159796) Escherichia coli APEC O78 14481112 YP_007380311.1 CDS APECO78_05660 NC_020163.1 1159796 1160410 R COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome o ubiquinol oxidase subunit III complement(1159796..1160410) Escherichia coli APEC O78 14481113 YP_007380312.1 CDS APECO78_05665 NC_020163.1 1160400 1162391 R COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; cytochrome o ubiquinol oxidase subunit I complement(1160400..1162391) Escherichia coli APEC O78 14481114 YP_007380313.1 CDS APECO78_05670 NC_020163.1 1162413 1163360 R COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; cytochrome o ubiquinol oxidase subunit II complement(1162413..1163360) Escherichia coli APEC O78 14481115 YP_007380314.1 CDS ampG NC_020163.1 1163820 1165295 R COG0477 Permeases of the major facilitator superfamily; muropeptide transporter complement(1163820..1165295) Escherichia coli APEC O78 14481116 YP_007380315.1 CDS APECO78_05680 NC_020163.1 1165339 1165917 R COG3056 Uncharacterized lipoprotein; hypothetical protein complement(1165339..1165917) Escherichia coli APEC O78 14481117 YP_007380316.1 CDS APECO78_05685 NC_020163.1 1166222 1166539 D COG0271 Stress-induced morphogen (activity unknown); regulator of murein genes 1166222..1166539 Escherichia coli APEC O78 14481118 YP_007380317.1 CDS APECO78_05690 NC_020163.1 1166548 1166736 D hypothetical protein 1166548..1166736 Escherichia coli APEC O78 14481119 YP_007380318.1 CDS APECO78_05695 NC_020163.1 1166883 1168181 D COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor 1166883..1168181 Escherichia coli APEC O78 14481120 YP_007380319.1 CDS APECO78_05700 NC_020163.1 1168320 1168562 D ATP-dependent Clp protease proteolytic subunit 1168320..1168562 Escherichia coli APEC O78 14481121 YP_007380320.1 CDS APECO78_05705 NC_020163.1 1168427 1169050 D COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 1168427..1169050 Escherichia coli APEC O78 14481122 YP_007380321.1 CDS APECO78_05710 NC_020163.1 1168949 1169128 R hypothetical protein complement(1168949..1169128) Escherichia coli APEC O78 14481123 YP_007380322.1 CDS APECO78_05715 NC_020163.1 1169176 1170450 D COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent protease ATP-binding subunit ClpX 1169176..1170450 Escherichia coli APEC O78 14481124 YP_007380323.1 CDS APECO78_05720 NC_020163.1 1170638 1172992 D COG0466 ATP-dependent Lon protease, bacterial type; DNA-binding ATP-dependent protease La 1170638..1172992 Escherichia coli APEC O78 14481125 YP_007380324.1 CDS APECO78_05725 NC_020163.1 1173201 1173473 D COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit beta 1173201..1173473 Escherichia coli APEC O78 14481126 YP_007380325.1 CDS APECO78_05730 NC_020163.1 1173665 1175536 D COG0760 Parvulin-like peptidyl-prolyl isomerase; periplasmic folding chaperone 1173665..1175536 Escherichia coli APEC O78 14481127 YP_007380326.1 CDS APECO78_05735 NC_020163.1 1175687 1176058 D COG1555 DNA uptake protein and related DNA-binding proteins; hypothetical protein 1175687..1176058 Escherichia coli APEC O78 14481128 YP_007380327.1 CDS APECO78_05740 NC_020163.1 1176152 1176550 D COG0824 Predicted thioesterase; thioesterase superfamily protein 1176152..1176550 Escherichia coli APEC O78 14481129 YP_007380328.1 CDS APECO78_05745 NC_020163.1 1176602 1177297 R COG0603 Predicted PP-loop superfamily ATPase; queuosine biosynthesis protein QueC complement(1176602..1177297) Escherichia coli APEC O78 14481130 YP_007380329.1 CDS APECO78_05750 NC_020163.1 1177362 1179062 R COG4533 ABC-type uncharacterized transport system, periplasmic component; putative substrate-binding protein complement(1177362..1179062) Escherichia coli APEC O78 14481131 YP_007380330.1 CDS APECO78_05755 NC_020163.1 1179162 1179980 D COG0561 Predicted hydrolases of the HAD superfamily; cof family hydrolase 1179162..1179980 Escherichia coli APEC O78 14481132 YP_007380331.1 CDS APECO78_05760 NC_020163.1 1180133 1180591 D COG1522 Transcriptional regulators; LRP-like transcriptional regulator 1180133..1180591 Escherichia coli APEC O78 14481133 YP_007380332.1 CDS APECO78_05765 NC_020163.1 1180621 1182393 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATP-binding protein 1180621..1182393 Escherichia coli APEC O78 14481134 YP_007380333.1 CDS APECO78_05770 NC_020163.1 1182386 1184167 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug transporter membrane\ATP-binding components 1182386..1184167 Escherichia coli APEC O78 14481135 YP_007380334.1 CDS APECO78_05775 NC_020163.1 1184348 1184686 D COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 2 1184348..1184686 Escherichia coli APEC O78 14481136 YP_007380335.1 CDS APECO78_05780 NC_020163.1 1184716 1186002 D COG0004 Ammonia permease; ammonium transporter 1184716..1186002 Escherichia coli APEC O78 14481137 YP_007380336.1 CDS APECO78_05785 NC_020163.1 1186051 1186911 R COG1946 Acyl-CoA thioesterase; acyl-CoA thioesterase II complement(1186051..1186911) Escherichia coli APEC O78 14481138 YP_007380337.1 CDS APECO78_05790 NC_020163.1 1187129 1187701 D COG3126 Uncharacterized protein conserved in bacteria; lipoprotein 1187129..1187701 Escherichia coli APEC O78 14481139 YP_007380338.1 CDS APECO78_05795 NC_020163.1 1187732 1188121 R COG3695 Predicted methylated DNA-protein cysteine methyltransferase; methylated-DNA-[protein]-cysteine S-methyltransferase complement(1187732..1188121) Escherichia coli APEC O78 14481140 YP_007380339.1 CDS APECO78_05800 NC_020163.1 1188485 1188775 D COG5507 Uncharacterized conserved protein; hypothetical protein 1188485..1188775 Escherichia coli APEC O78 14481141 YP_007380340.1 CDS APECO78_05805 NC_020163.1 1188817 1190367 R COG4943 Predicted signal transduction protein containing sensor and EAL domains; hypothetical protein complement(1188817..1190367) Escherichia coli APEC O78 14481142 YP_007380341.1 CDS APECO78_05810 NC_020163.1 1190531 1191001 R hypothetical protein complement(1190531..1191001) Escherichia coli APEC O78 14481143 YP_007380342.1 CDS APECO78_05815 NC_020163.1 1191117 1191668 R COG0110 Acetyltransferase (isoleucine patch superfamily); maltose O-acetyltransferase complement(1191117..1191668) Escherichia coli APEC O78 14481144 YP_007380343.1 CDS APECO78_05820 NC_020163.1 1191840 1192058 R modulator of gene expression, with H-NS complement(1191840..1192058) Escherichia coli APEC O78 14481145 YP_007380344.1 CDS APECO78_05825 NC_020163.1 1192084 1192458 R Hha toxicity attenuator complement(1192084..1192458) Escherichia coli APEC O78 14481146 YP_007380345.1 CDS APECO78_05830 NC_020163.1 1193004 1196153 R COG0841 Cation/multidrug efflux pump; multidrug efflux system protein AcrB complement(1193004..1196153) Escherichia coli APEC O78 14481147 YP_007380346.1 CDS APECO78_05835 NC_020163.1 1196176 1197369 R COG0845 Membrane-fusion protein; acriflavine resistance protein A complement(1196176..1197369) Escherichia coli APEC O78 14481148 YP_007380347.1 CDS APECO78_05840 NC_020163.1 1197511 1198158 D COG1309 Transcriptional regulator; DNA-binding transcriptional repressor AcrR 1197511..1198158 Escherichia coli APEC O78 14481149 YP_007380348.1 CDS APECO78_05845 NC_020163.1 1198286 1201648 D COG3264 Small-conductance mechanosensitive channel; hypothetical protein 1198286..1201648 Escherichia coli APEC O78 14481150 YP_007380349.1 CDS APECO78_05850 NC_020163.1 1201860 1202021 R hypothetical protein complement(1201860..1202021) Escherichia coli APEC O78 14481151 YP_007380350.1 CDS APECO78_05855 NC_020163.1 1202035 1202562 R COG3923 Primosomal replication protein N''; primosomal replication protein N'' complement(1202035..1202562) Escherichia coli APEC O78 14481152 YP_007380351.1 CDS APECO78_05860 NC_020163.1 1202632 1203009 D COG2832 Uncharacterized protein conserved in bacteria; hypothetical protein 1202632..1203009 Escherichia coli APEC O78 14481153 YP_007380352.1 CDS APECO78_05865 NC_020163.1 1203162 1203713 D COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase 1203162..1203713 Escherichia coli APEC O78 14481154 YP_007380353.1 CDS APECO78_05870 NC_020163.1 1203842 1205773 D COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau 1203842..1205773 Escherichia coli APEC O78 14481155 YP_007380354.1 CDS APECO78_05875 NC_020163.1 1205826 1206155 D COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 1205826..1206155 Escherichia coli APEC O78 14481156 YP_007380355.1 CDS APECO78_05880 NC_020163.1 1206155 1206760 D COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR 1206155..1206760 Escherichia coli APEC O78 14481157 YP_007380356.1 CDS APECO78_05885 NC_020163.1 1206870 1208744 D COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 1206870..1208744 Escherichia coli APEC O78 14481158 YP_007380357.1 CDS APECO78_05890 NC_020163.1 1208925 1209569 D COG0563 Adenylate kinase and related kinases; adenylate kinase 1208925..1209569 Escherichia coli APEC O78 14481159 YP_007380358.1 CDS hemH NC_020163.1 1209805 1210767 D COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase 1209805..1210767 Escherichia coli APEC O78 14481160 YP_007380359.1 CDS APECO78_05900 NC_020163.1 1210764 1211723 R COG0657 Esterase/lipase; acetyl esterase complement(1210764..1211723) Escherichia coli APEC O78 14481161 YP_007380360.1 CDS APECO78_05905 NC_020163.1 1211875 1213179 D COG0524 Sugar kinases, ribokinase family; inosine/guanosine kinase 1211875..1213179 Escherichia coli APEC O78 14481162 YP_007380361.1 CDS APECO78_05910 NC_020163.1 1213312 1214988 R COG4651 Kef-type K+ transport system, predicted NAD-binding component; cation:proton antiport protein complement(1213312..1214988) Escherichia coli APEC O78 14481163 YP_007380362.1 CDS APECO78_05915 NC_020163.1 1215226 1216446 R COG0477 Permeases of the major facilitator superfamily; fosmidomycin efflux system protein Fsr complement(1215226..1216446) Escherichia coli APEC O78 14481164 YP_007380363.1 CDS ushA NC_020163.1 1216664 1218316 D COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 1216664..1218316 Escherichia coli APEC O78 14481165 YP_007380364.1 CDS APECO78_05925 NC_020163.1 1218353 1218832 R COG2606 Uncharacterized conserved protein; hypothetical protein complement(1218353..1218832) Escherichia coli APEC O78 14481166 YP_007380365.1 CDS APECO78_05930 NC_020163.1 1219036 1219830 R COG3735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1219036..1219830) Escherichia coli APEC O78 14481167 YP_007380366.1 CDS APECO78_05935 NC_020163.1 1219968 1220309 D COG3093 Plasmid maintenance system antidote protein; DNA-binding transcriptional regulator 1219968..1220309 Escherichia coli APEC O78 14481168 YP_007380367.1 CDS copA NC_020163.1 1220423 1222927 R COG2217 Cation transport ATPase; copper exporting ATPase complement(1220423..1222927) Escherichia coli APEC O78 14481169 YP_007380368.1 CDS APECO78_05945 NC_020163.1 1223189 1224121 D COG2066 Glutaminase; glutaminase 1223189..1224121 Escherichia coli APEC O78 14481170 YP_007380369.1 CDS APECO78_05950 NC_020163.1 1224124 1225416 D COG0531 Amino acid transporters; transporter 1224124..1225416 Escherichia coli APEC O78 14481171 YP_007380370.1 CDS APECO78_05955 NC_020163.1 1225541 1225948 D COG0789 Predicted transcriptional regulators; DNA-binding transcriptional regulator CueR 1225541..1225948 Escherichia coli APEC O78 14481172 YP_007380371.1 CDS APECO78_05960 NC_020163.1 1225949 1226407 R COG1585 Membrane protein implicated in regulation of membrane protease activity; nodulation efficiency family protein complement(1225949..1226407) Escherichia coli APEC O78 14481173 YP_007380372.1 CDS APECO78_05965 NC_020163.1 1226404 1227321 R COG0330 Membrane protease subunits, stomatin/prohibitin homologs; protease complement(1226404..1227321) Escherichia coli APEC O78 14481174 YP_007380373.1 CDS APECO78_05970 NC_020163.1 1227467 1228144 D COG4619 ABC-type uncharacterized transport system, ATPase component; putative ABC transporter ATP-binding protein YbbL 1227467..1228144 Escherichia coli APEC O78 14481175 YP_007380374.1 CDS APECO78_05975 NC_020163.1 1228131 1228910 D COG0390 ABC-type uncharacterized transport system, permease component; metal resistance protein 1228131..1228910 Escherichia coli APEC O78 14481176 YP_007380375.1 CDS APECO78_05980 NC_020163.1 1228973 1229827 R COG3118 Thioredoxin domain-containing protein; thioredoxin-like protein complement(1228973..1229827) Escherichia coli APEC O78 14481177 YP_007380376.1 CDS APECO78_05985 NC_020163.1 1229888 1230658 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase complement(1229888..1230658) Escherichia coli APEC O78 14481178 YP_007380377.1 CDS APECO78_05990 NC_020163.1 1230687 1231313 R COG2755 Lysophospholipase L1 and related esterases; esterase complement(1230687..1231313) Escherichia coli APEC O78 14481179 YP_007380378.1 CDS APECO78_05995 NC_020163.1 1231281 1231967 D COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; ABC transporter ATP-binding protein 1231281..1231967 Escherichia coli APEC O78 14481180 YP_007380379.1 CDS APECO78_06000 NC_020163.1 1231964 1234378 D COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component; putative inner membrane protein 1231964..1234378 Escherichia coli APEC O78 14481181 YP_007380380.1 CDS APECO78_06005 NC_020163.1 1234378 1234518 D hypothetical protein 1234378..1234518 Escherichia coli APEC O78 14481182 YP_007380381.1 CDS APECO78_06010 NC_020163.1 1235090 1236184 R COG2603 Predicted ATPase; tRNA 2-selenouridine synthase SelU complement(1235090..1236184) Escherichia coli APEC O78 14481183 YP_007380382.1 CDS APECO78_06015 NC_020163.1 1236253 1237179 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator AllS complement(1236253..1237179) Escherichia coli APEC O78 14481184 YP_007380383.1 CDS APECO78_06020 NC_020163.1 1237409 1237891 D COG3194 Ureidoglycolate hydrolase; ureidoglycolate hydrolase 1237409..1237891 Escherichia coli APEC O78 14481185 YP_007380384.1 CDS APECO78_06025 NC_020163.1 1237969 1238784 D COG1414 Transcriptional regulator; DNA-binding transcriptional repressor AllR 1237969..1238784 Escherichia coli APEC O78 14481186 YP_007380385.1 CDS APECO78_06030 NC_020163.1 1238874 1240655 D COG3960 Glyoxylate carboligase; glyoxylate carboligase 1238874..1240655 Escherichia coli APEC O78 14481187 YP_007380386.1 CDS APECO78_06035 NC_020163.1 1240668 1241444 D COG3622 Hydroxypyruvate isomerase; hydroxypyruvate isomerase 1240668..1241444 Escherichia coli APEC O78 14481188 YP_007380387.1 CDS APECO78_06040 NC_020163.1 1241544 1242422 D COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase 1241544..1242422 Escherichia coli APEC O78 14481189 YP_007380388.1 CDS APECO78_06055 NC_020163.1 1244105 1245466 D COG0044 Dihydroorotase and related cyclic amidohydrolases; allantoinase 1244105..1245466 Escherichia coli APEC O78 14481190 YP_007380389.1 CDS APECO78_06060 NC_020163.1 1245523 1246824 D COG2233 Xanthine/uracil permeases; uracil/xanthine transporter 1245523..1246824 Escherichia coli APEC O78 14481191 YP_007380390.1 CDS APECO78_06065 NC_020163.1 1246846 1247991 D COG1929 Glycerate kinase; glycerate kinase 1246846..1247991 Escherichia coli APEC O78 14481192 YP_007380391.1 CDS APECO78_06070 NC_020163.1 1248219 1249004 R COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization; hypothetical protein complement(1248219..1249004) Escherichia coli APEC O78 14481193 YP_007380392.1 CDS APECO78_06075 NC_020163.1 1249015 1250250 R COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; allantoate amidohydrolase complement(1249015..1250250) Escherichia coli APEC O78 14481194 YP_007380393.1 CDS APECO78_06080 NC_020163.1 1250272 1251321 R COG2055 Malate/L-lactate dehydrogenases; ureidoglycolate dehydrogenase complement(1250272..1251321) Escherichia coli APEC O78 14481195 YP_007380394.1 CDS APECO78_06085 NC_020163.1 1251638 1253305 D COG0074 Succinyl-CoA synthetase, alpha subunit; acyl-CoA synthetase 1251638..1253305 Escherichia coli APEC O78 14481196 YP_007380395.1 CDS APECO78_06090 NC_020163.1 1253315 1254574 D hypothetical protein 1253315..1254574 Escherichia coli APEC O78 14481197 YP_007380396.1 CDS APECO78_06095 NC_020163.1 1254585 1255400 D hypothetical protein 1254585..1255400 Escherichia coli APEC O78 14481198 YP_007380397.1 CDS APECO78_06100 NC_020163.1 1255397 1256290 D COG0549 Carbamate kinase; carbamate kinase 1255397..1256290 Escherichia coli APEC O78 14481199 YP_007380398.1 CDS APECO78_06105 NC_020163.1 1256320 1256418 D hypothetical protein 1256320..1256418 Escherichia coli APEC O78 14481200 YP_007380399.1 CDS APECO78_06110 NC_020163.1 1256427 1257494 R COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); N5-carboxyaminoimidazole ribonucleotide synthase complement(1256427..1257494) Escherichia coli APEC O78 14481201 YP_007380400.1 CDS APECO78_06115 NC_020163.1 1257491 1258000 R COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1257491..1258000) Escherichia coli APEC O78 14481202 YP_007380401.1 CDS APECO78_06120 NC_020163.1 1258118 1258840 R COG2908 Uncharacterized protein conserved in bacteria; UDP-2,3-diacylglucosamine hydrolase complement(1258118..1258840) Escherichia coli APEC O78 14481203 YP_007380402.1 CDS APECO78_06125 NC_020163.1 1258843 1259337 R COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B complement(1258843..1259337) Escherichia coli APEC O78 14481204 YP_007380403.1 CDS APECO78_06130 NC_020163.1 1259511 1260896 D COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 1259511..1260896 Escherichia coli APEC O78 14481205 YP_007380404.1 CDS APECO78_06135 NC_020163.1 1260932 1261453 R COG1988 Predicted membrane-bound metal-dependent hydrolases; membrane-bound metal-dependent hydrolase complement(1260932..1261453) Escherichia coli APEC O78 14481206 YP_007380405.1 CDS APECO78_06140 NC_020163.1 1261561 1261773 R COG2501 Uncharacterized conserved protein; hypothetical protein complement(1261561..1261773) Escherichia coli APEC O78 14481207 YP_007380406.1 CDS APECO78_06145 NC_020163.1 1261775 1262641 R COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5,10-methylene-tetrahydrofolatedehydrogenase/ 5,10-methylene-tetrahydrofolatecyclohydrolase complement(1261775..1262641) Escherichia coli APEC O78 14481208 YP_007380407.1 CDS APECO78_06150 NC_020163.1 1263112 1263654 D COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein 1263112..1263654 Escherichia coli APEC O78 14481209 YP_007380408.1 CDS APECO78_06155 NC_020163.1 1263874 1264566 D COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein FimC 1263874..1264566 Escherichia coli APEC O78 14481210 YP_007380409.1 CDS APECO78_06160 NC_020163.1 1264795 1267059 D COG3188 P pilus assembly protein, porin PapC; outer membrane export usher protein SfmD 1264795..1267059 Escherichia coli APEC O78 14481211 YP_007380410.1 CDS APECO78_06165 NC_020163.1 1267032 1267205 D COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein FimD 1267032..1267205 Escherichia coli APEC O78 14481212 YP_007380411.1 CDS fimH NC_020163.1 1267218 1268225 D fimbrial-like adhesin 1267218..1268225 Escherichia coli APEC O78 14481213 YP_007380412.1 CDS APECO78_06175 NC_020163.1 1268236 1268751 D COG3539 P pilus assembly protein, pilin FimA; fimbrial-like adhesin protein 1268236..1268751 Escherichia coli APEC O78 14481214 YP_007380413.1 CDS APECO78_06180 NC_020163.1 1268754 1269386 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator FimZ complement(1268754..1269386) Escherichia coli APEC O78 14481215 YP_007380414.1 CDS APECO78_06185 NC_020163.1 1269721 1270884 R COG0582 Integrase; site-specific recombinase, phage integrase family protein complement(1269721..1270884) Escherichia coli APEC O78 14484599 YP_007380415.1 CDS APECO78_06190 NC_020163.1 1271111 1271416 R hypothetical protein complement(1271111..1271416) Escherichia coli APEC O78 14481217 YP_007380416.1 CDS APECO78_06195 NC_020163.1 1271416 1271778 R hypothetical protein complement(1271416..1271778) Escherichia coli APEC O78 14481218 YP_007380417.1 CDS APECO78_06200 NC_020163.1 1271769 1272305 R COG1896 Predicted hydrolases of HD superfamily; hypothetical protein complement(1271769..1272305) Escherichia coli APEC O78 14481219 YP_007380418.1 CDS APECO78_06205 NC_020163.1 1272433 1273257 R COG5532 Uncharacterized conserved protein; hypothetical protein complement(1272433..1273257) Escherichia coli APEC O78 14481220 YP_007380419.1 CDS APECO78_06210 NC_020163.1 1273322 1273684 R hypothetical protein complement(1273322..1273684) Escherichia coli APEC O78 14481221 YP_007380420.1 CDS APECO78_06215 NC_020163.1 1273782 1274327 R COG4220 Phage DNA packaging protein, Nu1 subunit of terminase; DNA packaging Nu1 complement(1273782..1274327) Escherichia coli APEC O78 14481222 YP_007380421.1 CDS APECO78_06220 NC_020163.1 1274892 1275074 R hypothetical protein complement(1274892..1275074) Escherichia coli APEC O78 14481223 YP_007380422.1 CDS APECO78_06225 NC_020163.1 1275281 1275607 R COG0810 Periplasmic protein TonB, links inner and outer membranes; tonB-like membrane protein complement(1275281..1275607) Escherichia coli APEC O78 14481224 YP_007380423.1 CDS APECO78_06230 NC_020163.1 1276088 1276381 D Iss 1276088..1276381 Escherichia coli APEC O78 14481225 YP_007380424.1 CDS APECO78_06235 NC_020163.1 1276413 1276874 R bacteriophage lysis protein complement(1276413..1276874) Escherichia coli APEC O78 14481226 YP_007380425.1 CDS APECO78_06240 NC_020163.1 1276871 1277404 R COG3772 Phage-related lysozyme (muraminidase); Qin prophage lysozyme complement(1276871..1277404) Escherichia coli APEC O78 14481227 YP_007380426.1 CDS APECO78_06245 NC_020163.1 1277748 1278092 R hypothetical protein complement(1277748..1278092) Escherichia coli APEC O78 14481228 YP_007380427.1 CDS APECO78_06250 NC_020163.1 1278097 1278312 R hypothetical protein complement(1278097..1278312) Escherichia coli APEC O78 14481229 YP_007380428.1 CDS APECO78_06255 NC_020163.1 1278335 1278463 R hypothetical protein complement(1278335..1278463) Escherichia coli APEC O78 14481230 YP_007380429.1 CDS APECO78_06260 NC_020163.1 1278854 1279048 D hypothetical protein 1278854..1279048 Escherichia coli APEC O78 14481231 YP_007380430.1 CDS APECO78_06265 NC_020163.1 1279406 1280497 R COG0863 DNA modification methylase; DNA methylase complement(1279406..1280497) Escherichia coli APEC O78 14481232 YP_007380431.1 CDS APECO78_06270 NC_020163.1 1280617 1280820 R hypothetical protein complement(1280617..1280820) Escherichia coli APEC O78 14481233 YP_007380432.1 CDS APECO78_06275 NC_020163.1 1281140 1282159 D hypothetical protein 1281140..1282159 Escherichia coli APEC O78 14481234 YP_007380433.1 CDS APECO78_06280 NC_020163.1 1282174 1282551 R antitermination protein Q from phage origin complement(1282174..1282551) Escherichia coli APEC O78 14481235 YP_007380434.1 CDS APECO78_06285 NC_020163.1 1282569 1283564 R hypothetical protein complement(1282569..1283564) Escherichia coli APEC O78 14481236 YP_007380435.1 CDS APECO78_06290 NC_020163.1 1283566 1284363 R hypothetical protein complement(1283566..1284363) Escherichia coli APEC O78 14481237 YP_007380436.1 CDS APECO78_06295 NC_020163.1 1284383 1284772 R COG4570 Holliday junction resolvase; crossover junction endodeoxyribonuclease (holliday junction resolvase) complement(1284383..1284772) Escherichia coli APEC O78 14481238 YP_007380437.1 CDS APECO78_06300 NC_020163.1 1284769 1285095 R COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein complement(1284769..1285095) Escherichia coli APEC O78 14481239 YP_007380438.1 CDS APECO78_06305 NC_020163.1 1285092 1285745 R phage AdoMet-dependent methyltransferase complement(1285092..1285745) Escherichia coli APEC O78 14481240 YP_007380439.1 CDS APECO78_06310 NC_020163.1 1285745 1286239 R hypothetical protein complement(1285745..1286239) Escherichia coli APEC O78 14481241 YP_007380440.1 CDS APECO78_06315 NC_020163.1 1286236 1287009 R phage replication protein O complement(1286236..1287009) Escherichia coli APEC O78 14481242 YP_007380441.1 CDS APECO78_06320 NC_020163.1 1287019 1287345 D putative outer membrane protein Lom precursor 1287019..1287345 Escherichia coli APEC O78 14481243 YP_007380442.1 CDS APECO78_06325 NC_020163.1 1287410 1291012 D hypothetical protein 1287410..1291012 Escherichia coli APEC O78 14481244 YP_007380443.1 CDS APECO78_06330 NC_020163.1 1291097 1291186 D Tail fiber assembly protein from lambdoid prophage Qin 1291097..1291186 Escherichia coli APEC O78 14481245 YP_007380444.1 CDS APECO78_06335 NC_020163.1 1291284 1291874 R COG1961 Site-specific recombinases, DNA invertase Pin homologs; Site-specific recombinase resolvase family protein PinR complement(1291284..1291874) Escherichia coli APEC O78 14481246 YP_007380445.1 CDS APECO78_06340 NC_020163.1 1292249 1292515 R hypothetical protein complement(1292249..1292515) Escherichia coli APEC O78 14481247 YP_007380446.1 CDS APECO78_06345 NC_020163.1 1293030 1293686 R COG0500 SAM-dependent methyltransferases; methylase complement(1293030..1293686) Escherichia coli APEC O78 14481248 YP_007380447.1 CDS APECO78_06350 NC_020163.1 1293755 1294060 D hypothetical protein 1293755..1294060 Escherichia coli APEC O78 14481249 YP_007380448.1 CDS APECO78_06355 NC_020163.1 1294244 1295728 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative protease complement(1294244..1295728) Escherichia coli APEC O78 14481250 YP_007380449.1 CDS APECO78_06360 NC_020163.1 1295915 1296868 R COG4571 Outer membrane protease; outer membrane protease complement(1295915..1296868) Escherichia coli APEC O78 14481251 YP_007380450.1 CDS APECO78_06365 NC_020163.1 1297381 1298142 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator EnvY complement(1297381..1298142) Escherichia coli APEC O78 14481252 YP_007380451.1 CDS APECO78_06370 NC_020163.1 1298325 1299215 R hypothetical protein complement(1298325..1299215) Escherichia coli APEC O78 14481253 YP_007380452.1 CDS APECO78_06375 NC_020163.1 1299222 1299566 D hypothetical protein 1299222..1299566 Escherichia coli APEC O78 14481254 YP_007380453.1 CDS APECO78_06380 NC_020163.1 1299579 1302188 R COG0457 FOG: TPR repeat; bacteriophage N4 receptor, outer membrane subunit complement(1299579..1302188) Escherichia coli APEC O78 14481255 YP_007380454.1 CDS nfrB NC_020163.1 1302175 1304412 R COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; bacteriophage N4 adsorption protein B complement(1302175..1304412) Escherichia coli APEC O78 14481256 YP_007380455.1 CDS APECO78_06390 NC_020163.1 1304681 1305817 R COG5433 Transposase; putative H repeat-associated protein complement(1304681..1305817) Escherichia coli APEC O78 14481257 YP_007380456.1 CDS APECO78_06395 NC_020163.1 1305921 1306232 R hypothetical protein complement(1305921..1306232) Escherichia coli APEC O78 14481258 YP_007380457.1 CDS APECO78_06400 NC_020163.1 1306347 1306598 R hypothetical protein complement(1306347..1306598) Escherichia coli APEC O78 14481259 YP_007380458.1 CDS APECO78_06405 NC_020163.1 1306595 1307929 R COG3209 Rhs family protein; Rhs core protein with extension complement(1306595..1307929) Escherichia coli APEC O78 14481260 YP_007380459.1 CDS APECO78_06410 NC_020163.1 1309361 1311457 R COG3209 Rhs family protein; Rhs core protein complement(1309361..1311457) Escherichia coli APEC O78 14481261 YP_007380460.1 CDS APECO78_06415 NC_020163.1 1311477 1311938 R COG5435 Uncharacterized conserved protein; hypothetical protein complement(1311477..1311938) Escherichia coli APEC O78 14481262 YP_007380461.1 CDS APECO78_06420 NC_020163.1 1311966 1313867 R COG3501 Uncharacterized protein conserved in bacteria; Vgr protein complement(1311966..1313867) Escherichia coli APEC O78 14481263 YP_007380462.1 CDS APECO78_06425 NC_020163.1 1314604 1316052 R COG0642 Signal transduction histidine kinase; sensor kinase CusS complement(1314604..1316052) Escherichia coli APEC O78 14481264 YP_007380463.1 CDS APECO78_06430 NC_020163.1 1316042 1316725 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional activator CusR complement(1316042..1316725) Escherichia coli APEC O78 14481265 YP_007380464.1 CDS APECO78_06435 NC_020163.1 1316882 1318264 D COG1538 Outer membrane protein; copper/silver efflux system outer membrane protein CusC 1316882..1318264 Escherichia coli APEC O78 14481266 YP_007380465.1 CDS APECO78_06440 NC_020163.1 1318288 1318620 D COG5569 Uncharacterized conserved protein; copper-binding protein 1318288..1318620 Escherichia coli APEC O78 14481267 YP_007380466.1 CDS APECO78_06445 NC_020163.1 1318636 1319859 D COG0845 Membrane-fusion protein; copper/silver efflux system membrane fusionprotein CusB 1318636..1319859 Escherichia coli APEC O78 14481268 YP_007380467.1 CDS APECO78_06450 NC_020163.1 1319871 1323014 D COG3696 Putative silver efflux pump; copper/silver efflux system, membrane component 1319871..1323014 Escherichia coli APEC O78 14481269 YP_007380468.1 CDS APECO78_06455 NC_020163.1 1323116 1324492 D COG1113 Gamma-aminobutyrate permease and related permeases; phenylalanine transporter 1323116..1324492 Escherichia coli APEC O78 14481270 YP_007380469.1 CDS APECO78_06460 NC_020163.1 1324560 1325807 R COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel complement(1324560..1325807) Escherichia coli APEC O78 14481271 YP_007380470.1 CDS APECO78_06465 NC_020163.1 1325915 1326568 R COG0778 Nitroreductase; dihydropteridine reductase complement(1325915..1326568) Escherichia coli APEC O78 14481272 YP_007380471.1 CDS APECO78_06470 NC_020163.1 1326662 1327030 R COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1326662..1327030) Escherichia coli APEC O78 14481273 YP_007380472.1 CDS APECO78_06475 NC_020163.1 1327095 1327343 R inner membrane protein complement(1327095..1327343) Escherichia coli APEC O78 14481274 YP_007380473.1 CDS APECO78_06480 NC_020163.1 1327409 1328527 R COG2170 Uncharacterized conserved protein; carboxylate-amine ligase complement(1327409..1328527) Escherichia coli APEC O78 14481275 YP_007380474.1 CDS APECO78_06485 NC_020163.1 1328980 1329132 D hypothetical protein 1328980..1329132 Escherichia coli APEC O78 14481276 YP_007380475.1 CDS APECO78_06490 NC_020163.1 1329254 1329883 R COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; 4'-phosphopantetheinyl transferase complement(1329254..1329883) Escherichia coli APEC O78 14481277 YP_007380476.1 CDS APECO78_06495 NC_020163.1 1330049 1332289 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; outer membrane receptor FepA complement(1330049..1332289) Escherichia coli APEC O78 14481278 YP_007380477.1 CDS APECO78_06500 NC_020163.1 1332610 1333734 D COG2382 Enterochelin esterase and related enzymes; enterobactin/ferric enterobactin esterase 1332610..1333734 Escherichia coli APEC O78 14481279 YP_007380478.1 CDS APECO78_06505 NC_020163.1 1333737 1333955 D COG3251 Uncharacterized protein conserved in bacteria; hypothetical protein 1333737..1333955 Escherichia coli APEC O78 14481280 YP_007380479.1 CDS entF NC_020163.1 1333952 1337833 D COG1020 Non-ribosomal peptide synthetase modules and related proteins; enterobactin synthase subunit F 1333952..1337833 Escherichia coli APEC O78 14481281 YP_007380480.1 CDS APECO78_06515 NC_020163.1 1338048 1339181 D COG3765 Chain length determinant protein; LPS O-antigen length regulator 1338048..1339181 Escherichia coli APEC O78 14481282 YP_007380481.1 CDS APECO78_06520 NC_020163.1 1339178 1339993 R COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; Ferric enterobactin transport ATP-binding protein complement(1339178..1339993) Escherichia coli APEC O78 14481283 YP_007380482.1 CDS APECO78_06525 NC_020163.1 1339990 1340982 R COG4779 ABC-type enterobactin transport system, permease component; iron-enterobactin transporter permease complement(1339990..1340982) Escherichia coli APEC O78 14481284 YP_007380483.1 CDS APECO78_06530 NC_020163.1 1340979 1341983 R COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-enterobactin transporter membrane protein complement(1340979..1341983) Escherichia coli APEC O78 14481285 YP_007380484.1 CDS APECO78_06535 NC_020163.1 1342094 1343344 D COG0477 Permeases of the major facilitator superfamily; enterobactin exporter EntS 1342094..1343344 Escherichia coli APEC O78 14481286 YP_007380485.1 CDS APECO78_06540 NC_020163.1 1343348 1344304 R COG4592 ABC-type Fe2+-enterobactin transport system, periplasmic component; iron-enterobactin transporter periplasmic binding protein complement(1343348..1344304) Escherichia coli APEC O78 14481287 YP_007380486.1 CDS APECO78_06545 NC_020163.1 1344679 1345854 D COG1169 Isochorismate synthase; isochorismate synthase EntC 1344679..1345854 Escherichia coli APEC O78 14481288 YP_007380487.1 CDS entE NC_020163.1 1345864 1347474 D COG1021 Peptide arylation enzymes; enterobactin synthase subunit E 1345864..1347474 Escherichia coli APEC O78 14481289 YP_007380488.1 CDS APECO78_06555 NC_020163.1 1347488 1348345 D COG1535 Isochorismate hydrolase; isochorismatase 1347488..1348345 Escherichia coli APEC O78 14481290 YP_007380489.1 CDS APECO78_06560 NC_020163.1 1348345 1349091 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2,3-dihydroxybenzoate-2,3-dehydrogenase 1348345..1349091 Escherichia coli APEC O78 14481291 YP_007380490.1 CDS APECO78_06565 NC_020163.1 1349094 1349507 D COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; thioesterase 1349094..1349507 Escherichia coli APEC O78 14481292 YP_007380491.1 CDS APECO78_06570 NC_020163.1 1349688 1351793 D COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein A 1349688..1351793 Escherichia coli APEC O78 14481293 YP_007380492.1 CDS APECO78_06575 NC_020163.1 1351975 1352172 D COG2879 Uncharacterized small protein; hypothetical protein 1351975..1352172 Escherichia coli APEC O78 14481294 YP_007380493.1 CDS APECO78_06580 NC_020163.1 1352182 1353270 R COG0371 Glycerol dehydrogenase and related enzymes; oxidoreductase complement(1352182..1353270) Escherichia coli APEC O78 14481295 YP_007380494.1 CDS APECO78_06585 NC_020163.1 1353379 1354539 D COG0436 Aspartate/tyrosine/aromatic aminotransferase; methionine aminotransferase 1353379..1354539 Escherichia coli APEC O78 14481296 YP_007380495.1 CDS APECO78_06590 NC_020163.1 1354540 1355157 R COG1475 Predicted transcriptional regulators; hypothetical protein complement(1354540..1355157) Escherichia coli APEC O78 14481297 YP_007380496.1 CDS APECO78_06595 NC_020163.1 1355142 1356362 R COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase; hypothetical protein complement(1355142..1356362) Escherichia coli APEC O78 14481298 YP_007380497.1 CDS APECO78_06600 NC_020163.1 1356510 1357412 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(1356510..1357412) Escherichia coli APEC O78 14481299 YP_007380498.1 CDS dsbG NC_020163.1 1357621 1358367 R COG1651 Protein-disulfide isomerase; disulfide isomerase/thiol-disulfide oxidase complement(1357621..1358367) Escherichia coli APEC O78 14481300 YP_007380499.1 CDS APECO78_06610 NC_020163.1 1358738 1359301 D COG0450 Peroxiredoxin; alkyl hydroperoxide reductase subunit C 1358738..1359301 Escherichia coli APEC O78 14481301 YP_007380500.1 CDS APECO78_06615 NC_020163.1 1359472 1361037 D COG3634 Alkyl hydroperoxide reductase, large subunit; alkyl hydroperoxide reductase subunit F 1359472..1361037 Escherichia coli APEC O78 14481302 YP_007380501.1 CDS APECO78_06620 NC_020163.1 1361158 1361586 R COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspG complement(1361158..1361586) Escherichia coli APEC O78 14481303 YP_007380502.1 CDS APECO78_06625 NC_020163.1 1361807 1363045 D COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; putative oxidoreductase, Zn-dependent and NAD(P)-binding protein 1361807..1363045 Escherichia coli APEC O78 14481304 YP_007380503.1 CDS APECO78_06630 NC_020163.1 1363276 1363686 R COG0782 Transcription elongation factor; nucleoside diphosphate kinase regulator complement(1363276..1363686) Escherichia coli APEC O78 14481305 YP_007380504.1 CDS APECO78_06635 NC_020163.1 1363916 1364722 R COG3719 Ribonuclease I; ribonuclease I complement(1363916..1364722) Escherichia coli APEC O78 14481306 YP_007380505.1 CDS APECO78_06640 NC_020163.1 1364836 1366299 R COG0471 Di- and tricarboxylate transporters; citrate/succinate antiporter CitT complement(1364836..1366299) Escherichia coli APEC O78 14481307 YP_007380506.1 CDS APECO78_06645 NC_020163.1 1366350 1367228 R COG1767 Triphosphoribosyl-dephospho-CoA synthetase; triphosphoribosyl-dephospho-CoA synthase complement(1366350..1367228) Escherichia coli APEC O78 14481308 YP_007380507.1 CDS APECO78_06650 NC_020163.1 1367203 1367754 R COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase); 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase complement(1367203..1367754) Escherichia coli APEC O78 14481309 YP_007380508.1 CDS APECO78_06655 NC_020163.1 1367758 1369290 R COG3051 Citrate lyase, alpha subunit; citrate lyase subunit alpha complement(1367758..1369290) Escherichia coli APEC O78 14481310 YP_007380509.1 CDS APECO78_06660 NC_020163.1 1369301 1370209 R COG2301 Citrate lyase beta subunit; citrate lyase beta subunit complement(1369301..1370209) Escherichia coli APEC O78 14481311 YP_007380510.1 CDS APECO78_06665 NC_020163.1 1370206 1370502 R COG3052 Citrate lyase, gamma subunit; citrate lyase subunit gamma complement(1370206..1370502) Escherichia coli APEC O78 14481312 YP_007380511.1 CDS APECO78_06670 NC_020163.1 1370517 1371575 R COG3053 Citrate lyase synthetase; [citrate [pro-3S]-lyase] ligase complement(1370517..1371575) Escherichia coli APEC O78 14481313 YP_007380512.1 CDS dpiB NC_020163.1 1371955 1373613 D COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor histidine kinase DpiB 1371955..1373613 Escherichia coli APEC O78 14481314 YP_007380513.1 CDS APECO78_06680 NC_020163.1 1373582 1374262 D COG4565 Response regulator of citrate/malate metabolism; two-component response regulator DpiA 1373582..1374262 Escherichia coli APEC O78 14481315 YP_007380514.1 CDS APECO78_06685 NC_020163.1 1374303 1375688 R COG3069 C4-dicarboxylate transporter; C4-dicarboxylate transporter DcuC complement(1374303..1375688) Escherichia coli APEC O78 14481316 YP_007380515.1 CDS APECO78_06690 NC_020163.1 1376277 1376837 D phospholipid:lipid A palmitoyltransferase 1376277..1376837 Escherichia coli APEC O78 14481317 YP_007380516.1 CDS APECO78_06695 NC_020163.1 1377012 1377221 D COG1278 Cold shock proteins; cold shock protein CspE 1377012..1377221 Escherichia coli APEC O78 14481318 YP_007380517.1 CDS APECO78_06700 NC_020163.1 1377275 1377658 R COG0239 Integral membrane protein possibly involved in chromosome condensation; chromosome condensation membrane protein complement(1377275..1377658) Escherichia coli APEC O78 14481319 YP_007380518.1 CDS APECO78_06705 NC_020163.1 1377751 1378539 D COG0388 Predicted amidohydrolase; hypothetical protein 1377751..1378539 Escherichia coli APEC O78 14481320 YP_007380519.1 CDS tatE NC_020163.1 1378668 1378871 D COG1826 Sec-independent protein secretion pathway components; twin arginine translocase protein E 1378668..1378871 Escherichia coli APEC O78 14481321 YP_007380520.1 CDS APECO78_06715 NC_020163.1 1378972 1379937 R COG0320 Lipoate synthase; lipoyl synthase complement(1378972..1379937) Escherichia coli APEC O78 14481322 YP_007380521.1 CDS APECO78_06720 NC_020163.1 1380146 1381099 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator complement(1380146..1381099) Escherichia coli APEC O78 14481323 YP_007380522.1 CDS APECO78_06725 NC_020163.1 1381157 1381306 D COG0474 Cation transport ATPase; hypothetical protein 1381157..1381306 Escherichia coli APEC O78 14481324 YP_007380523.1 CDS APECO78_06730 NC_020163.1 1381358 1381999 R COG0321 Lipoate-protein ligase B; lipoate-protein ligase B complement(1381358..1381999) Escherichia coli APEC O78 14481325 YP_007380524.1 CDS APECO78_06735 NC_020163.1 1382100 1382363 R COG2921 Uncharacterized conserved protein; hypothetical protein complement(1382100..1382363) Escherichia coli APEC O78 14481326 YP_007380525.1 CDS APECO78_06740 NC_020163.1 1382474 1383685 R COG1686 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(1382474..1383685) Escherichia coli APEC O78 14481327 YP_007380526.1 CDS APECO78_06745 NC_020163.1 1383825 1384913 R COG0797 Lipoproteins; rare lipoprotein A complement(1383825..1384913) Escherichia coli APEC O78 14481328 YP_007380527.1 CDS APECO78_06750 NC_020163.1 1384924 1385979 R COG0772 Bacterial cell division membrane protein; Rod shape-determining protein rodA complement(1384924..1385979) Escherichia coli APEC O78 14481329 YP_007380528.1 CDS APECO78_06755 NC_020163.1 1386038 1387939 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 complement(1386038..1387939) Escherichia coli APEC O78 14481330 YP_007380529.1 CDS APECO78_06760 NC_020163.1 1387970 1388437 R COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase complement(1387970..1388437) Escherichia coli APEC O78 14481331 YP_007380530.1 CDS APECO78_06765 NC_020163.1 1388441 1388758 R COG0799 Uncharacterized homolog of plant Iojap protein; ribosome-associated protein complement(1388441..1388758) Escherichia coli APEC O78 14481332 YP_007380531.1 CDS APECO78_06770 NC_020163.1 1389018 1389629 R COG0406 Fructose-2,6-bisphosphatase; alpha-ribazole phosphatase complement(1389018..1389629) Escherichia coli APEC O78 14481333 YP_007380532.1 CDS APECO78_06775 NC_020163.1 1389653 1390294 R COG1057 Nicotinic acid mononucleotide adenylyltransferase; nicotinic acid mononucleotide adenylyltransferase complement(1389653..1390294) Escherichia coli APEC O78 14481334 YP_007380533.1 CDS holA NC_020163.1 1390296 1391327 R COG1466 DNA polymerase III, delta subunit; DNA polymerase III subunit delta complement(1390296..1391327) Escherichia coli APEC O78 14481335 YP_007380534.1 CDS APECO78_06785 NC_020163.1 1391327 1391908 R COG2980 Rare lipoprotein B; LPS-assembly lipoprotein RlpB complement(1391327..1391908) Escherichia coli APEC O78 14481336 YP_007380535.1 CDS leuS NC_020163.1 1391923 1394505 R COG0495 Leucyl-tRNA synthetase; leucyl-tRNA ligase complement(1391923..1394505) Escherichia coli APEC O78 14481337 YP_007380536.1 CDS APECO78_06795 NC_020163.1 1394740 1395222 D COG0542 ATPases with chaperone activity, ATP-binding subunit; hypothetical protein 1394740..1395222 Escherichia coli APEC O78 14481338 YP_007380537.1 CDS APECO78_06800 NC_020163.1 1395292 1396269 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(1395292..1396269) Escherichia coli APEC O78 14481339 YP_007380538.1 CDS APECO78_06805 NC_020163.1 1396433 1397140 D hypothetical protein 1396433..1397140 Escherichia coli APEC O78 14481340 YP_007380539.1 CDS APECO78_06810 NC_020163.1 1397137 1398564 D COG2214 DnaJ-class molecular chaperone; heat shock protein DnaJ domain-containing protein 1397137..1398564 Escherichia coli APEC O78 14481341 YP_007380540.1 CDS APECO78_06815 NC_020163.1 1398574 1399128 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(1398574..1399128) Escherichia coli APEC O78 14481342 YP_007380541.1 CDS APECO78_06820 NC_020163.1 1399230 1399937 D hypothetical protein 1399230..1399937 Escherichia coli APEC O78 14481343 YP_007380542.1 CDS APECO78_06825 NC_020163.1 1399934 1401103 D Hsc56 co-chaperone of HscC 1399934..1401103 Escherichia coli APEC O78 14481344 YP_007380543.1 CDS APECO78_06830 NC_020163.1 1401130 1401384 D Hsc56 co-chaperone of HscC 1401130..1401384 Escherichia coli APEC O78 14481345 YP_007380544.1 CDS rihA NC_020163.1 1403198 1404133 R COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase 1 complement(1403198..1404133) Escherichia coli APEC O78 14481346 YP_007380545.1 CDS APECO78_06850 NC_020163.1 1404251 1404976 R COG1126 ABC-type polar amino acid transport system, ATPase component; glutamate/aspartate transport ATP-binding protein gltL complement(1404251..1404976) Escherichia coli APEC O78 14481347 YP_007380546.1 CDS APECO78_06855 NC_020163.1 1404976 1405650 R COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate transport system permease GltK complement(1404976..1405650) Escherichia coli APEC O78 14481348 YP_007380547.1 CDS APECO78_06860 NC_020163.1 1405650 1406390 R COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate ABC transporter permease component complement(1405650..1406390) Escherichia coli APEC O78 14481349 YP_007380548.1 CDS APECO78_06865 NC_020163.1 1406560 1407468 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamate and aspartate transporter subunit complement(1406560..1407468) Escherichia coli APEC O78 14481350 YP_007380549.1 CDS APECO78_06870 NC_020163.1 1407923 1409800 D COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); hypothetical protein 1407923..1409800 Escherichia coli APEC O78 14481351 YP_007380550.1 CDS lnt NC_020163.1 1409878 1411416 R COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(1409878..1411416) Escherichia coli APEC O78 14481352 YP_007380551.1 CDS APECO78_06880 NC_020163.1 1411441 1412319 R COG4535 Putative Mg2+ and Co2+ transporter CorC; magnesium/cobalt efflux protein CorC complement(1411441..1412319) Escherichia coli APEC O78 14481353 YP_007380552.1 CDS APECO78_06885 NC_020163.1 1412409 1412876 R COG0319 Predicted metal-dependent hydrolase; hypothetical protein complement(1412409..1412876) Escherichia coli APEC O78 14481354 YP_007380553.1 CDS APECO78_06890 NC_020163.1 1412873 1413913 R COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH family protein complement(1412873..1413913) Escherichia coli APEC O78 14481355 YP_007380554.1 CDS APECO78_06895 NC_020163.1 1414066 1415490 R COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase complement(1414066..1415490) Escherichia coli APEC O78 14481356 YP_007380555.1 CDS APECO78_06900 NC_020163.1 1415636 1416811 D COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1415636..1416811 Escherichia coli APEC O78 14481357 YP_007380556.1 CDS asnB NC_020163.1 1418047 1419711 R COG0367 Asparagine synthase (glutamine-hydrolyzing); asparagine synthetase B complement(1418047..1419711) Escherichia coli APEC O78 14484606 YP_007380557.1 CDS APECO78_06910 NC_020163.1 1419912 1420082 R hypothetical protein complement(1419912..1420082) Escherichia coli APEC O78 14481359 YP_007380558.1 CDS APECO78_06915 NC_020163.1 1420108 1420860 R COG0647 Predicted sugar phosphatases of the HAD superfamily; UMP phosphatase complement(1420108..1420860) Escherichia coli APEC O78 14481360 YP_007380559.1 CDS APECO78_06920 NC_020163.1 1420908 1422128 R COG1940 Transcriptional regulator/sugar kinase; N-acetylglucosamine repressor complement(1420908..1422128) Escherichia coli APEC O78 14481361 YP_007380560.1 CDS nagA NC_020163.1 1422137 1423285 R COG1820 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase complement(1422137..1423285) Escherichia coli APEC O78 14481362 YP_007380561.1 CDS APECO78_06930 NC_020163.1 1423345 1424145 R COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; glucosamine-6-phosphate deaminase complement(1423345..1424145) Escherichia coli APEC O78 14481363 YP_007380562.1 CDS APECO78_06935 NC_020163.1 1424478 1426424 D COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system N-acetyl glucosamine specific transporter subunits IIABC 1424478..1426424 Escherichia coli APEC O78 14481364 YP_007380563.1 CDS APECO78_06940 NC_020163.1 1426692 1428356 D COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutaminyl-tRNA synthetase 1426692..1428356 Escherichia coli APEC O78 14481365 YP_007380564.1 CDS APECO78_06945 NC_020163.1 1428936 1430342 D outer membrane porin 1428936..1430342 Escherichia coli APEC O78 14481366 YP_007380565.1 CDS APECO78_06950 NC_020163.1 1430392 1430718 D hypothetical protein 1430392..1430718 Escherichia coli APEC O78 14481367 YP_007380566.1 CDS APECO78_06955 NC_020163.1 1430803 1431249 R COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulator complement(1430803..1431249) Escherichia coli APEC O78 14481368 YP_007380567.1 CDS APECO78_06960 NC_020163.1 1431242 1431328 R ryhB-regulated fur leader peptide complement(1431242..1431328) Escherichia coli APEC O78 14481369 YP_007380568.1 CDS APECO78_06965 NC_020163.1 1431538 1432068 R COG0716 Flavodoxins; flavodoxin FldA complement(1431538..1432068) Escherichia coli APEC O78 14481370 YP_007380569.1 CDS APECO78_06970 NC_020163.1 1432208 1432501 R LexA regulated protein complement(1432208..1432501) Escherichia coli APEC O78 14481371 YP_007380570.1 CDS APECO78_06975 NC_020163.1 1432641 1433405 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative esterase/lipase complement(1432641..1433405) Escherichia coli APEC O78 14481372 YP_007380571.1 CDS APECO78_06980 NC_020163.1 1433590 1434135 D COG3057 Negative regulator of replication initiationR; replication initiation regulator SeqA 1433590..1434135 Escherichia coli APEC O78 14481373 YP_007380572.1 CDS APECO78_06985 NC_020163.1 1434161 1435801 D COG0033 Phosphoglucomutase; phosphoglucomutase 1434161..1435801 Escherichia coli APEC O78 14481374 YP_007380573.1 CDS APECO78_06990 NC_020163.1 1435857 1437176 R COG0531 Amino acid transporters; putrescine transporter complement(1435857..1437176) Escherichia coli APEC O78 14481375 YP_007380574.1 CDS APECO78_06995 NC_020163.1 1437173 1439371 R COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase complement(1437173..1439371) Escherichia coli APEC O78 14481376 YP_007380575.1 CDS APECO78_07000 NC_020163.1 1440061 1440738 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional activator KdpE complement(1440061..1440738) Escherichia coli APEC O78 14481377 YP_007380576.1 CDS APECO78_07005 NC_020163.1 1440735 1443419 R COG2205 Osmosensitive K+ channel histidine kinase; sensor protein KdpD complement(1440735..1443419) Escherichia coli APEC O78 14481378 YP_007380577.1 CDS APECO78_07010 NC_020163.1 1443412 1443984 R COG2156 K+-transporting ATPase, c chain; potassium-transporting ATPase subunit C complement(1443412..1443984) Escherichia coli APEC O78 14481379 YP_007380578.1 CDS APECO78_07015 NC_020163.1 1443993 1446041 R COG2216 High-affinity K+ transport system, ATPase chain B; potassium-transporting ATPase subunit B complement(1443993..1446041) Escherichia coli APEC O78 14481380 YP_007380579.1 CDS APECO78_07020 NC_020163.1 1446064 1447737 R COG2060 K+-transporting ATPase, A chain; potassium-transporting ATPase subunit A complement(1446064..1447737) Escherichia coli APEC O78 14481381 YP_007380580.1 CDS APECO78_07025 NC_020163.1 1447737 1447826 R high-affinity potassium-transporting ATPase A chain complement(1447737..1447826) Escherichia coli APEC O78 14481382 YP_007380581.1 CDS APECO78_07030 NC_020163.1 1448139 1448345 D hypothetical protein 1448139..1448345 Escherichia coli APEC O78 14481383 YP_007380582.1 CDS APECO78_07035 NC_020163.1 1448588 1452781 D COG3209 Rhs family protein; YD repeat protein 1448588..1452781 Escherichia coli APEC O78 14481384 YP_007380583.1 CDS APECO78_07040 NC_020163.1 1453224 1454657 D COG3209 Rhs family protein; RhsC core protein 1453224..1454657 Escherichia coli APEC O78 14481385 YP_007380584.1 CDS APECO78_07045 NC_020163.1 1454654 1455223 D hypothetical protein 1454654..1455223 Escherichia coli APEC O78 14481386 YP_007380585.1 CDS APECO78_07050 NC_020163.1 1455449 1455703 D COG5433 Transposase; transposase 1455449..1455703 Escherichia coli APEC O78 14481387 YP_007380586.1 CDS APECO78_07055 NC_020163.1 1455922 1456965 D COG5433 Transposase; transposase, is4 family protein 1455922..1456965 Escherichia coli APEC O78 14481388 YP_007380587.1 CDS APECO78_07060 NC_020163.1 1457392 1457901 D COG3272 Uncharacterized conserved protein; hypothetical protein 1457392..1457901 Escherichia coli APEC O78 14481389 YP_007380588.1 CDS APECO78_07065 NC_020163.1 1457898 1459316 D COG0415 Deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase 1457898..1459316 Escherichia coli APEC O78 14481390 YP_007380589.1 CDS APECO78_07070 NC_020163.1 1459358 1460839 R COG3104 Dipeptide/tripeptide permease; dipeptide/tripeptide permease D complement(1459358..1460839) Escherichia coli APEC O78 14481391 YP_007380590.1 CDS APECO78_07075 NC_020163.1 1461110 1461853 D COG0327 Uncharacterized conserved protein; metal-binding protein 1461110..1461853 Escherichia coli APEC O78 14481392 YP_007380591.1 CDS APECO78_07080 NC_020163.1 1461876 1462532 D COG2049 Allophanate hydrolase subunit 1; carboxylase 1461876..1462532 Escherichia coli APEC O78 14481393 YP_007380592.1 CDS APECO78_07085 NC_020163.1 1462526 1463458 D COG1984 Allophanate hydrolase subunit 2; hydrolase subunit 1462526..1463458 Escherichia coli APEC O78 14481394 YP_007380593.1 CDS APECO78_07090 NC_020163.1 1463448 1464182 D COG1540 Uncharacterized proteins, homologs of lactam utilization protein B; LamB/YcsF family protein 1463448..1464182 Escherichia coli APEC O78 14481395 YP_007380594.1 CDS APECO78_07095 NC_020163.1 1464218 1465009 D COG0266 Formamidopyrimidine-DNA glycosylase; endonuclease VIII 1464218..1465009 Escherichia coli APEC O78 14481396 YP_007380595.1 CDS APECO78_07100 NC_020163.1 1465006 1466052 R COG3180 Putative ammonia monooxygenase; aidB regulatorAbrB complement(1465006..1466052) Escherichia coli APEC O78 14481397 YP_007380596.1 CDS APECO78_07105 NC_020163.1 1466204 1467265 R putative fimbrial-like adhesin protein complement(1466204..1467265) Escherichia coli APEC O78 14481398 YP_007380597.1 CDS APECO78_07110 NC_020163.1 1467262 1467993 R COG3121 P pilus assembly protein, chaperone PapD; chaperone, PapD family protein complement(1467262..1467993) Escherichia coli APEC O78 14481399 YP_007380598.1 CDS APECO78_07115 NC_020163.1 1468008 1470458 R COG3188 P pilus assembly protein, porin PapC; fimbrial biogenesis outer membrane usher protein complement(1468008..1470458) Escherichia coli APEC O78 14481400 YP_007380599.1 CDS APECO78_07120 NC_020163.1 1470518 1471084 R COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein complement(1470518..1471084) Escherichia coli APEC O78 14481401 YP_007380600.1 CDS APECO78_07125 NC_020163.1 1471474 1472757 R COG0372 Citrate synthase; type II citrate synthase complement(1471474..1472757) Escherichia coli APEC O78 14481402 YP_007380601.1 CDS APECO78_07130 NC_020163.1 1473466 1473855 D COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 large membrane subunit 1473466..1473855 Escherichia coli APEC O78 14481403 YP_007380602.1 CDS APECO78_07135 NC_020163.1 1473849 1474196 D COG2142 Succinate dehydrogenase, hydrophobic anchor subunit; succinate dehydrogenase hydrophobic subunit 1473849..1474196 Escherichia coli APEC O78 14481404 YP_007380603.1 CDS APECO78_07140 NC_020163.1 1474196 1475962 D COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; succinate dehydrogenase flavoprotein subunit 1474196..1475962 Escherichia coli APEC O78 14481405 YP_007380604.1 CDS sdhB NC_020163.1 1475978 1476694 D COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; succinate dehydrogenase iron-sulfur subunit 1475978..1476694 Escherichia coli APEC O78 14481406 YP_007380605.1 CDS APECO78_07150 NC_020163.1 1476728 1476859 R hypothetical protein complement(1476728..1476859) Escherichia coli APEC O78 14481407 YP_007380606.1 CDS APECO78_07155 NC_020163.1 1476995 1479796 D COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes; 2-oxoglutarate dehydrogenase E1 component 1476995..1479796 Escherichia coli APEC O78 14481408 YP_007380607.1 CDS APECO78_07160 NC_020163.1 1479811 1481028 D COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide succinyltransferase 1479811..1481028 Escherichia coli APEC O78 14481409 YP_007380608.1 CDS APECO78_07165 NC_020163.1 1481122 1482288 D COG0045 Succinyl-CoA synthetase, beta subunit; succinyl-CoA synthetase subunit beta 1481122..1482288 Escherichia coli APEC O78 14481410 YP_007380609.1 CDS APECO78_07170 NC_020163.1 1482288 1483157 D COG0074 Succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 1482288..1483157 Escherichia coli APEC O78 14481411 YP_007380610.1 CDS APECO78_07175 NC_020163.1 1483261 1483983 R COG2188 Transcriptional regulators; DNA-binding transcriptional repressor MngR complement(1483261..1483983) Escherichia coli APEC O78 14481412 YP_007380611.1 CDS APECO78_07180 NC_020163.1 1484092 1486068 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC 1484092..1486068 Escherichia coli APEC O78 14481413 YP_007380612.1 CDS APECO78_07185 NC_020163.1 1486086 1488719 D COG0383 Alpha-mannosidase; alpha-mannosidase 1486086..1488719 Escherichia coli APEC O78 14481414 YP_007380613.1 CDS APECO78_07190 NC_020163.1 1489566 1491134 D COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d terminal oxidase subunit 1 1489566..1491134 Escherichia coli APEC O78 14481415 YP_007380614.1 CDS APECO78_07195 NC_020163.1 1491150 1492289 D COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit 2 1491150..1492289 Escherichia coli APEC O78 14481416 YP_007380615.1 CDS APECO78_07200 NC_020163.1 1492304 1492417 D COG4890 Predicted outer membrane lipoprotein; cyd operon protein YbgT 1492304..1492417 Escherichia coli APEC O78 14481417 YP_007380616.1 CDS APECO78_07205 NC_020163.1 1492417 1492710 D COG3790 Predicted membrane protein; hypothetical protein 1492417..1492710 Escherichia coli APEC O78 14481418 YP_007380617.1 CDS APECO78_07210 NC_020163.1 1492860 1493264 D COG0824 Predicted thioesterase; acyl-CoA thioesterase YbgC 1492860..1493264 Escherichia coli APEC O78 14481419 YP_007380618.1 CDS APECO78_07215 NC_020163.1 1493261 1493953 D COG0811 Biopolymer transport proteins; colicin uptake protein TolQ 1493261..1493953 Escherichia coli APEC O78 14481420 YP_007380619.1 CDS APECO78_07220 NC_020163.1 1493957 1494385 D COG0848 Biopolymer transport protein; colicin uptake protein TolR 1493957..1494385 Escherichia coli APEC O78 14481421 YP_007380620.1 CDS APECO78_07225 NC_020163.1 1494450 1495715 D COG3064 Membrane protein involved in colicin uptake; cell envelope integrity inner membrane protein TolA 1494450..1495715 Escherichia coli APEC O78 14481422 YP_007380621.1 CDS APECO78_07230 NC_020163.1 1495848 1497140 D COG0823 Periplasmic component of the Tol biopolymer transport system; translocation protein TolB 1495848..1497140 Escherichia coli APEC O78 14481423 YP_007380622.1 CDS APECO78_07235 NC_020163.1 1497175 1497696 D COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated outer membrane lipoprotein 1497175..1497696 Escherichia coli APEC O78 14481424 YP_007380623.1 CDS APECO78_07240 NC_020163.1 1497706 1498497 D COG1729 Uncharacterized protein conserved in bacteria; tol-pal system protein YbgF 1497706..1498497 Escherichia coli APEC O78 14481425 YP_007380624.1 CDS APECO78_07245 NC_020163.1 1500066 1501109 D COG0379 Quinolinate synthase; quinolinate synthetase 1500066..1501109 Escherichia coli APEC O78 14484613 YP_007380625.1 CDS APECO78_07250 NC_020163.1 1501147 1501866 D COG3201 Nicotinamide mononucleotide transporter; nicotinamide riboside transporter PnuC 1501147..1501866 Escherichia coli APEC O78 14481427 YP_007380626.1 CDS APECO78_07255 NC_020163.1 1501863 1502804 R COG1230 Co/Zn/Cd efflux system component; zinc transporter ZitB complement(1501863..1502804) Escherichia coli APEC O78 14481428 YP_007380627.1 CDS APECO78_07260 NC_020163.1 1502918 1503298 R hypothetical protein complement(1502918..1503298) Escherichia coli APEC O78 14481429 YP_007380628.1 CDS APECO78_07265 NC_020163.1 1503614 1504666 D COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 1503614..1504666 Escherichia coli APEC O78 14481430 YP_007380629.1 CDS APECO78_07270 NC_020163.1 1504824 1505576 R COG0588 Phosphoglycerate mutase 1; phosphoglyceromutase complement(1504824..1505576) Escherichia coli APEC O78 14481431 YP_007380630.1 CDS galM NC_020163.1 1505781 1506821 R COG2017 Galactose mutarotase and related enzymes; galactose-1-epimerase complement(1505781..1506821) Escherichia coli APEC O78 14481432 YP_007380631.1 CDS APECO78_07280 NC_020163.1 1506815 1507963 R COG0153 Galactokinase; galactokinase complement(1506815..1507963) Escherichia coli APEC O78 14481433 YP_007380632.1 CDS APECO78_07285 NC_020163.1 1507967 1509013 R COG1085 Galactose-1-phosphate uridylyltransferase; galactose-1-phosphate uridylyltransferase complement(1507967..1509013) Escherichia coli APEC O78 14481434 YP_007380633.1 CDS APECO78_07290 NC_020163.1 1509023 1510039 R COG1087 UDP-glucose 4-epimerase; UDP-galactose-4-epimerase complement(1509023..1510039) Escherichia coli APEC O78 14481435 YP_007380634.1 CDS APECO78_07295 NC_020163.1 1510300 1511772 R COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; molybdenum transport ATP-binding protein ModF complement(1510300..1511772) Escherichia coli APEC O78 14481436 YP_007380635.1 CDS APECO78_07300 NC_020163.1 1511840 1512628 R COG2005 N-terminal domain of molybdenum-binding protein; DNA-binding transcriptional regulator ModE complement(1511840..1512628) Escherichia coli APEC O78 14481437 YP_007380636.1 CDS APECO78_07305 NC_020163.1 1512757 1512906 D hypothetical protein 1512757..1512906 Escherichia coli APEC O78 14481438 YP_007380637.1 CDS modA NC_020163.1 1513073 1513846 D COG0725 ABC-type molybdate transport system, periplasmic component; molybdate transporter periplasmic protein 1513073..1513846 Escherichia coli APEC O78 14481439 YP_007380638.1 CDS modB NC_020163.1 1513846 1514535 D COG4149 ABC-type molybdate transport system, permease component; molybdate ABC transporter permease protein 1513846..1514535 Escherichia coli APEC O78 14481440 YP_007380639.1 CDS modC NC_020163.1 1514538 1515596 D COG4148 ABC-type molybdate transport system, ATPase component; molybdate transporter ATP-binding protein 1514538..1515596 Escherichia coli APEC O78 14481441 YP_007380640.1 CDS APECO78_07325 NC_020163.1 1515597 1516415 R COG0561 Predicted hydrolases of the HAD superfamily; pyridoxal phosphate (PLP) phosphatase complement(1515597..1516415) Escherichia coli APEC O78 14481442 YP_007380641.1 CDS APECO78_07330 NC_020163.1 1516570 1517565 D COG2706 3-carboxymuconate cyclase; 6-phosphogluconolactonase 1516570..1517565 Escherichia coli APEC O78 14481443 YP_007380642.1 CDS APECO78_07335 NC_020163.1 1517606 1518559 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(1517606..1518559) Escherichia coli APEC O78 14481444 YP_007380643.1 CDS APECO78_07340 NC_020163.1 1518743 1519795 D COG2828 Uncharacterized protein conserved in bacteria; hypothetical protein 1518743..1519795 Escherichia coli APEC O78 14481445 YP_007380644.1 CDS APECO78_07345 NC_020163.1 1519871 1521304 D COG0471 Di- and tricarboxylate transporters; transporter 1519871..1521304 Escherichia coli APEC O78 14481446 YP_007380645.1 CDS APECO78_07350 NC_020163.1 1521487 1523748 D COG1048 Aconitase A; hydratase 1521487..1523748 Escherichia coli APEC O78 14481447 YP_007380646.1 CDS APECO78_07355 NC_020163.1 1523982 1525265 R COG4677 Pectin methylesterase; acyl-CoA thioesterase complement(1523982..1525265) Escherichia coli APEC O78 14481448 YP_007380647.1 CDS APECO78_07360 NC_020163.1 1525400 1526470 R COG0582 Integrase; Integrase from phage complement(1525400..1526470) Escherichia coli APEC O78 14481449 YP_007380648.1 CDS APECO78_07365 NC_020163.1 1526448 1526666 R excisionase complement(1526448..1526666) Escherichia coli APEC O78 14481450 YP_007380649.1 CDS APECO78_07370 NC_020163.1 1526706 1526873 R hypothetical protein complement(1526706..1526873) Escherichia coli APEC O78 14481451 YP_007380650.1 CDS APECO78_07375 NC_020163.1 1527146 1527511 D COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 1527146..1527511 Escherichia coli APEC O78 14481452 YP_007380651.1 CDS APECO78_07380 NC_020163.1 1527469 1528374 D COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 1527469..1528374 Escherichia coli APEC O78 14481453 YP_007380652.1 CDS APECO78_07385 NC_020163.1 1528694 1529491 R COG0515 Serine/threonine protein kinase; Eaa prophage protein complement(1528694..1529491) Escherichia coli APEC O78 14481454 YP_007380653.1 CDS APECO78_07390 NC_020163.1 1529502 1530257 R hypothetical protein complement(1529502..1530257) Escherichia coli APEC O78 14481455 YP_007380654.1 CDS APECO78_07395 NC_020163.1 1530259 1530666 R hypothetical protein complement(1530259..1530666) Escherichia coli APEC O78 14481456 YP_007380655.1 CDS APECO78_07400 NC_020163.1 1530663 1530884 R COG1734 DnaK suppressor protein; putative C4-type zinc finger protein complement(1530663..1530884) Escherichia coli APEC O78 14481457 YP_007380656.1 CDS APECO78_07405 NC_020163.1 1530983 1531264 R hypothetical protein complement(1530983..1531264) Escherichia coli APEC O78 14481458 YP_007380657.1 CDS APECO78_07410 NC_020163.1 1531195 1531278 R hypothetical protein complement(1531195..1531278) Escherichia coli APEC O78 14481459 YP_007380658.1 CDS APECO78_07415 NC_020163.1 1531275 1531466 R phage protein complement(1531275..1531466) Escherichia coli APEC O78 14481460 YP_007380659.1 CDS APECO78_07420 NC_020163.1 1531439 1531630 R phage protein complement(1531439..1531630) Escherichia coli APEC O78 14481461 YP_007380660.1 CDS APECO78_07425 NC_020163.1 1531621 1532301 R phage exonuclease complement(1531621..1532301) Escherichia coli APEC O78 14481462 YP_007380661.1 CDS APECO78_07430 NC_020163.1 1532298 1532480 R Bet protein complement(1532298..1532480) Escherichia coli APEC O78 14481463 YP_007380662.1 CDS APECO78_07435 NC_020163.1 1532491 1532769 R Kil protein complement(1532491..1532769) Escherichia coli APEC O78 14481464 YP_007380663.1 CDS APECO78_07440 NC_020163.1 1532849 1533217 R Lambda prophage-derived protein ea10 complement(1532849..1533217) Escherichia coli APEC O78 14481465 YP_007380664.1 CDS APECO78_07445 NC_020163.1 1533400 1533600 R restriction alleviation protein complement(1533400..1533600) Escherichia coli APEC O78 14481466 YP_007380665.1 CDS APECO78_07450 NC_020163.1 1533584 1533670 R hypothetical protein complement(1533584..1533670) Escherichia coli APEC O78 14481467 YP_007380666.1 CDS APECO78_07455 NC_020163.1 1533712 1533927 D antitermination protein Q 1533712..1533927 Escherichia coli APEC O78 14481468 YP_007380667.1 CDS APECO78_07460 NC_020163.1 1534116 1535198 R COG3203 Outer membrane protein (porin); outer membrane porin, DLP12 prophage complement(1534116..1535198) Escherichia coli APEC O78 14481469 YP_007380668.1 CDS APECO78_07465 NC_020163.1 1535788 1536003 D phage lysis protein 1535788..1536003 Escherichia coli APEC O78 14481470 YP_007380669.1 CDS APECO78_07470 NC_020163.1 1536003 1536500 D COG3772 Phage-related lysozyme (muraminidase); lysozyme 1536003..1536500 Escherichia coli APEC O78 14481471 YP_007380670.1 CDS APECO78_07475 NC_020163.1 1536497 1536958 D Rz endopeptidase from lambdoid prophage DLP12 1536497..1536958 Escherichia coli APEC O78 14481472 YP_007380671.1 CDS APECO78_07480 NC_020163.1 1536990 1537283 R Lambdoid prophage DLP12 Bor-like protein complement(1536990..1537283) Escherichia coli APEC O78 14481473 YP_007380672.1 CDS APECO78_07485 NC_020163.1 1537574 1537984 R COG5562 Phage envelope protein; putative envelope protein complement(1537574..1537984) Escherichia coli APEC O78 14481474 YP_007380673.1 CDS APECO78_07490 NC_020163.1 1538270 1538476 D hypothetical protein 1538270..1538476 Escherichia coli APEC O78 14481475 YP_007380674.1 CDS APECO78_07495 NC_020163.1 1539224 1539769 D COG4220 Phage DNA packaging protein, Nu1 subunit of terminase; phage terminase small subunit (DNA packaging protein) 1539224..1539769 Escherichia coli APEC O78 14481476 YP_007380675.1 CDS APECO78_07500 NC_020163.1 1539744 1540847 D COG5525 Bacteriophage tail assembly protein; phage terminase, large subunit 1539744..1540847 Escherichia coli APEC O78 14481477 YP_007380676.1 CDS APECO78_07505 NC_020163.1 1540909 1541724 D COG4733 Phage-related protein, tail component; phage-related protein, tail component 1540909..1541724 Escherichia coli APEC O78 14481478 YP_007380677.1 CDS APECO78_07510 NC_020163.1 1541791 1542390 D hypothetical protein 1541791..1542390 Escherichia coli APEC O78 14481479 YP_007380678.1 CDS APECO78_07515 NC_020163.1 1542455 1545760 D hypothetical protein 1542455..1545760 Escherichia coli APEC O78 14481480 YP_007380679.1 CDS APECO78_07520 NC_020163.1 1547446 1548189 D COG2207 AraC-type DNA-binding domain-containing proteins; Putative AraC-type regulatory protein 1547446..1548189 Escherichia coli APEC O78 14481481 YP_007380680.1 CDS APECO78_07525 NC_020163.1 1548231 1548596 R COG2801 Transposase and inactivated derivatives; hypothetical protein complement(1548231..1548596) Escherichia coli APEC O78 14481482 YP_007380681.1 CDS APECO78_07530 NC_020163.1 1548747 1548962 D COG2963 Transposase and inactivated derivatives; Transposase IS3/IS911 family protein 1548747..1548962 Escherichia coli APEC O78 14481483 YP_007380682.1 CDS APECO78_07535 NC_020163.1 1549292 1549768 R COG1881 Phospholipid-binding protein; kinase inhibitor protein complement(1549292..1549768) Escherichia coli APEC O78 14481484 YP_007380683.1 CDS APECO78_07540 NC_020163.1 1549827 1551116 R COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diaminopelargonic acid synthetase complement(1549827..1551116) Escherichia coli APEC O78 14481485 YP_007380684.1 CDS APECO78_07545 NC_020163.1 1551203 1552243 D COG0502 Biotin synthase and related enzymes; biotin synthase 1551203..1552243 Escherichia coli APEC O78 14481486 YP_007380685.1 CDS APECO78_07550 NC_020163.1 1552240 1553394 D COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase 1552240..1553394 Escherichia coli APEC O78 14481487 YP_007380686.1 CDS APECO78_07555 NC_020163.1 1553381 1554136 D COG0500 SAM-dependent methyltransferases; biotin biosynthesis protein BioC 1553381..1554136 Escherichia coli APEC O78 14481488 YP_007380687.1 CDS bioD NC_020163.1 1554129 1554806 D COG0132 Dethiobiotin synthetase; dithiobiotin synthetase 1554129..1554806 Escherichia coli APEC O78 14481489 YP_007380688.1 CDS APECO78_07565 NC_020163.1 1555385 1557406 D COG0556 Helicase subunit of the DNA excision repair complex; UvrABC system protein B 1555385..1557406 Escherichia coli APEC O78 14481490 YP_007380689.1 CDS APECO78_07570 NC_020163.1 1557598 1558506 R COG0391 Uncharacterized conserved protein; transferase with NAD(P)-binding Rossmann-fold domain complement(1557598..1558506) Escherichia coli APEC O78 14481491 YP_007380690.1 CDS APECO78_07575 NC_020163.1 1558903 1559892 D COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A 1558903..1559892 Escherichia coli APEC O78 14481492 YP_007380691.1 CDS APECO78_07580 NC_020163.1 1559914 1560426 D COG0521 Molybdopterin biosynthesis enzymes; molybdopterin biosynthesis protein B 1559914..1560426 Escherichia coli APEC O78 14481493 YP_007380692.1 CDS APECO78_07585 NC_020163.1 1560429 1560914 D COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC 1560429..1560914 Escherichia coli APEC O78 14481494 YP_007380693.1 CDS moaD NC_020163.1 1560907 1561152 D COG1977 Molybdopterin converting factor, small subunit; molybdopterin synthase small subunit 1560907..1561152 Escherichia coli APEC O78 14481495 YP_007380694.1 CDS moaE NC_020163.1 1561154 1561606 D COG0314 Molybdopterin converting factor, large subunit; molybdopterin guanine dinucleotide biosynthesis protein MoaE 1561154..1561606 Escherichia coli APEC O78 14481496 YP_007380695.1 CDS APECO78_07600 NC_020163.1 1561743 1562447 D COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein 1561743..1562447 Escherichia coli APEC O78 14481497 YP_007380696.1 CDS APECO78_07605 NC_020163.1 1562652 1563365 D COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein 1562652..1563365 Escherichia coli APEC O78 14481498 YP_007380697.1 CDS APECO78_07610 NC_020163.1 1563401 1564357 R COG0392 Predicted integral membrane protein; hypothetical protein complement(1563401..1564357) Escherichia coli APEC O78 14481499 YP_007380698.1 CDS APECO78_07615 NC_020163.1 1564357 1565598 R COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthase 2 complement(1564357..1565598) Escherichia coli APEC O78 14481500 YP_007380699.1 CDS APECO78_07620 NC_020163.1 1565595 1566356 R COG3568 Metal-dependent hydrolase; hypothetical protein complement(1565595..1566356) Escherichia coli APEC O78 14481501 YP_007380700.1 CDS APECO78_07625 NC_020163.1 1566489 1566899 D COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; hypothetical protein 1566489..1566899 Escherichia coli APEC O78 14481502 YP_007380701.1 CDS APECO78_07630 NC_020163.1 1566861 1567967 R COG0842 ABC-type multidrug transport system, permease component; hypothetical protein complement(1566861..1567967) Escherichia coli APEC O78 14481503 YP_007380702.1 CDS APECO78_07635 NC_020163.1 1567978 1569111 R COG0842 ABC-type multidrug transport system, permease component; ABC transporter permease complement(1567978..1569111) Escherichia coli APEC O78 14481504 YP_007380703.1 CDS APECO78_07640 NC_020163.1 1569104 1570840 R COG1131 ABC-type multidrug transport system, ATPase component; ATP-binding component of a transporter complement(1569104..1570840) Escherichia coli APEC O78 14481505 YP_007380704.1 CDS APECO78_07645 NC_020163.1 1570833 1571828 R COG0845 Membrane-fusion protein; efflux pump membrane fusion protein complement(1570833..1571828) Escherichia coli APEC O78 14481506 YP_007380705.1 CDS APECO78_07650 NC_020163.1 1571831 1572502 R COG1309 Transcriptional regulator; DNA-binding transcriptional regulator complement(1571831..1572502) Escherichia coli APEC O78 14481507 YP_007380706.1 CDS APECO78_07655 NC_020163.1 1572731 1574095 D COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlE 1572731..1574095 Escherichia coli APEC O78 14481508 YP_007380707.1 CDS APECO78_07660 NC_020163.1 1574327 1574809 R COG3236 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1574327..1574809) Escherichia coli APEC O78 14481509 YP_007380708.1 CDS APECO78_07665 NC_020163.1 1574929 1577079 D COG1199 Rad3-related DNA helicases; ATP-dependent DNA helicase DinG 1574929..1577079 Escherichia coli APEC O78 14481510 YP_007380709.1 CDS APECO78_07670 NC_020163.1 1577107 1578069 D COG0547 Anthranilate phosphoribosyltransferase; glycosyl transferase family protein 1577107..1578069 Escherichia coli APEC O78 14481511 YP_007380710.1 CDS APECO78_07675 NC_020163.1 1578210 1579295 D COG2055 Malate/L-lactate dehydrogenases; dehydrogenase 1578210..1579295 Escherichia coli APEC O78 14481512 YP_007380711.1 CDS APECO78_07680 NC_020163.1 1579524 1579784 R hypothetical protein complement(1579524..1579784) Escherichia coli APEC O78 14481513 YP_007380712.1 CDS APECO78_07685 NC_020163.1 1580049 1580315 R COG1734 DnaK suppressor protein; hypothetical protein complement(1580049..1580315) Escherichia coli APEC O78 14481514 YP_007380713.1 CDS APECO78_07690 NC_020163.1 1580389 1581066 R COG3128 Uncharacterized iron-regulated protein; putative hydroxylase complement(1580389..1581066) Escherichia coli APEC O78 14481515 YP_007380714.1 CDS APECO78_07695 NC_020163.1 1581108 1583390 R COG4774 Outer membrane receptor for monomeric catechols; catecholate siderophore receptor Fiu complement(1581108..1583390) Escherichia coli APEC O78 14481516 YP_007380715.1 CDS APECO78_07700 NC_020163.1 1583655 1584059 R hypothetical protein complement(1583655..1584059) Escherichia coli APEC O78 14481517 YP_007380716.1 CDS APECO78_07705 NC_020163.1 1584191 1585117 D COG3129 Predicted SAM-dependent methyltransferase; 23S rRNA mA1618 methyltransferase 1584191..1585117 Escherichia coli APEC O78 14481518 YP_007380717.1 CDS APECO78_07710 NC_020163.1 1585114 1587339 R COG0668 Small-conductance mechanosensitive channel; hypothetical protein complement(1585114..1587339) Escherichia coli APEC O78 14481519 YP_007380718.1 CDS APECO78_07715 NC_020163.1 1587600 1588322 R COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter ATP-binding protein complement(1587600..1588322) Escherichia coli APEC O78 14481520 YP_007380719.1 CDS APECO78_07720 NC_020163.1 1588319 1588978 R COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter permease complement(1588319..1588978) Escherichia coli APEC O78 14481521 YP_007380720.1 CDS APECO78_07725 NC_020163.1 1589117 1589863 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter substrate-binding protein complement(1589117..1589863) Escherichia coli APEC O78 14481522 YP_007380721.1 CDS APECO78_07730 NC_020163.1 1590267 1590770 R COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Global regulator, starvation conditions complement(1590267..1590770) Escherichia coli APEC O78 14481523 YP_007380722.1 CDS APECO78_07735 NC_020163.1 1591069 1591956 R COG5006 Predicted permease, DMT superfamily; threonine and homoserine efflux system complement(1591069..1591956) Escherichia coli APEC O78 14481524 YP_007380723.1 CDS APECO78_07740 NC_020163.1 1592309 1592824 D COG3637 Opacity protein and related surface antigens; outer membrane protein X 1592309..1592824 Escherichia coli APEC O78 14481525 YP_007380724.1 CDS APECO78_07745 NC_020163.1 1592873 1594456 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative hydrolase, inner membrane complement(1592873..1594456) Escherichia coli APEC O78 14481526 YP_007380725.1 CDS APECO78_07750 NC_020163.1 1594728 1594856 R hypothetical protein complement(1594728..1594856) Escherichia coli APEC O78 14481527 YP_007380726.1 CDS APECO78_07755 NC_020163.1 1595042 1595509 D COG1321 Mn-dependent transcriptional regulator; manganese transport regulator MntR 1595042..1595509 Escherichia coli APEC O78 14481528 YP_007380727.1 CDS APECO78_07760 NC_020163.1 1595506 1596624 D COG0471 Di- and tricarboxylate transporters; transporter 1595506..1596624 Escherichia coli APEC O78 14481529 YP_007380728.1 CDS APECO78_07765 NC_020163.1 1596683 1597603 R COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase complement(1596683..1597603) Escherichia coli APEC O78 14481530 YP_007380729.1 CDS APECO78_07770 NC_020163.1 1597822 1599414 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 1597822..1599414 Escherichia coli APEC O78 14481531 YP_007380730.1 CDS APECO78_07775 NC_020163.1 1599655 1600920 R hypothetical protein complement(1599655..1600920) Escherichia coli APEC O78 14481532 YP_007380731.1 CDS APECO78_07780 NC_020163.1 1601072 1601887 R COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphatase SupH complement(1601072..1601887) Escherichia coli APEC O78 14481533 YP_007380732.1 CDS APECO78_07785 NC_020163.1 1602033 1604465 R COG1882 Pyruvate-formate lyase; putative pyruvate formate lyase complement(1602033..1604465) Escherichia coli APEC O78 14481534 YP_007380733.1 CDS APECO78_07790 NC_020163.1 1604471 1605370 R COG1180 Pyruvate-formate lyase-activating enzyme; glycyl-radical enzyme activating protein family complement(1604471..1605370) Escherichia coli APEC O78 14481535 YP_007380734.1 CDS APECO78_07795 NC_020163.1 1605501 1606163 D COG0176 Transaldolase; fructose-6-phosphate aldolase 1605501..1606163 Escherichia coli APEC O78 14481536 YP_007380735.1 CDS APECO78_07800 NC_020163.1 1606239 1606988 R COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; molybdopterin biosynthesis protein MoeB complement(1606239..1606988) Escherichia coli APEC O78 14481537 YP_007380736.1 CDS APECO78_07805 NC_020163.1 1606988 1608223 R COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein MoeA complement(1606988..1608223) Escherichia coli APEC O78 14481538 YP_007380737.1 CDS APECO78_07810 NC_020163.1 1608427 1609392 D COG1446 Asparaginase; isoaspartyl peptidase 1608427..1609392 Escherichia coli APEC O78 14481539 YP_007380738.1 CDS APECO78_07815 NC_020163.1 1609379 1611250 D COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; glutathione transporter ATP-binding protein 1609379..1611250 Escherichia coli APEC O78 14481540 YP_007380739.1 CDS APECO78_07820 NC_020163.1 1611270 1612808 D COG0747 ABC-type dipeptide transport system, periplasmic component; glutathione ABC transporter substrate-binding protein GsiB 1611270..1612808 Escherichia coli APEC O78 14481541 YP_007380740.1 CDS APECO78_07825 NC_020163.1 1612826 1613746 D COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease GsiC 1612826..1613746 Escherichia coli APEC O78 14481542 YP_007380741.1 CDS APECO78_07830 NC_020163.1 1613749 1614660 D COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease GsiD 1613749..1614660 Escherichia coli APEC O78 14481543 YP_007380742.1 CDS APECO78_07835 NC_020163.1 1614838 1617186 D COG2200 FOG: EAL domain; hypothetical protein 1614838..1617186 Escherichia coli APEC O78 14481544 YP_007380743.1 CDS APECO78_07840 NC_020163.1 1617194 1618522 D COG2199 FOG: GGDEF domain; diguanylate cyclase 1617194..1618522 Escherichia coli APEC O78 14481545 YP_007380744.1 CDS APECO78_07845 NC_020163.1 1618569 1619894 R COG0621 2-methylthioadenine synthetase; 30S ribosomal protein S12 methylthiotransferase complement(1618569..1619894) Escherichia coli APEC O78 14481546 YP_007380745.1 CDS APECO78_07850 NC_020163.1 1620107 1620490 D biofilm regulator BssR 1620107..1620490 Escherichia coli APEC O78 14481547 YP_007380746.1 CDS APECO78_07855 NC_020163.1 1620601 1621716 D COG2133 Glucose/sorbosone dehydrogenases; putative dehydrogenase 1620601..1621716 Escherichia coli APEC O78 14481548 YP_007380747.1 CDS APECO78_07860 NC_020163.1 1621713 1622339 R COG0625 Glutathione S-transferase; GST-like protein yliJ complement(1621713..1622339) Escherichia coli APEC O78 14481549 YP_007380748.1 CDS APECO78_07865 NC_020163.1 1622586 1623788 D COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase fraction C 1622586..1623788 Escherichia coli APEC O78 14481550 YP_007380749.1 CDS APECO78_07870 NC_020163.1 1623835 1624593 R COG1349 Transcriptional regulators of sugar metabolism; deoxyribose operon repressor complement(1623835..1624593) Escherichia coli APEC O78 14481551 YP_007380750.1 CDS APECO78_07875 NC_020163.1 1624651 1625247 R COG0671 Membrane-associated phospholipid phosphatase; undecaprenyl pyrophosphate phosphatase complement(1624651..1625247) Escherichia coli APEC O78 14481552 YP_007380751.1 CDS APECO78_07880 NC_020163.1 1625532 1626764 D COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein 1625532..1626764 Escherichia coli APEC O78 14481553 YP_007380752.1 CDS APECO78_07885 NC_020163.1 1626805 1627089 R hypothetical protein complement(1626805..1627089) Escherichia coli APEC O78 14481554 YP_007380753.1 CDS APECO78_07890 NC_020163.1 1627175 1627990 R COG0561 Predicted hydrolases of the HAD superfamily; phosphatase complement(1627175..1627990) Escherichia coli APEC O78 14481555 YP_007380754.1 CDS APECO78_07895 NC_020163.1 1627990 1629198 R COG0477 Permeases of the major facilitator superfamily; putative transporter complement(1627990..1629198) Escherichia coli APEC O78 14481556 YP_007380755.1 CDS APECO78_07900 NC_020163.1 1629282 1629818 D COG3226 Uncharacterized protein conserved in bacteria; putative DEOR-type transcriptional regulator 1629282..1629818 Escherichia coli APEC O78 14481557 YP_007380756.1 CDS APECO78_07905 NC_020163.1 1629923 1630975 R COG0582 Integrase; integrase complement(1629923..1630975) Escherichia coli APEC O78 14481558 YP_007380757.1 CDS APECO78_07910 NC_020163.1 1631162 1631353 R hypothetical protein complement(1631162..1631353) Escherichia coli APEC O78 14481559 YP_007380758.1 CDS APECO78_07915 NC_020163.1 1631369 1631938 R COG2932 Predicted transcriptional regulator; repressor protein complement(1631369..1631938) Escherichia coli APEC O78 14481560 YP_007380759.1 CDS APECO78_07920 NC_020163.1 1632064 1632285 D hypothetical protein 1632064..1632285 Escherichia coli APEC O78 14481561 YP_007380760.1 CDS APECO78_07925 NC_020163.1 1632318 1632827 D phage regulatory protein CII 1632318..1632827 Escherichia coli APEC O78 14481562 YP_007380761.1 CDS APECO78_07930 NC_020163.1 1632835 1633035 D hypothetical protein 1632835..1633035 Escherichia coli APEC O78 14481563 YP_007380762.1 CDS APECO78_07935 NC_020163.1 1632999 1633340 D hypothetical protein 1632999..1633340 Escherichia coli APEC O78 14481564 YP_007380763.1 CDS APECO78_07940 NC_020163.1 1633408 1633641 D hypothetical protein 1633408..1633641 Escherichia coli APEC O78 14481565 YP_007380764.1 CDS APECO78_07945 NC_020163.1 1633641 1633868 D COG1734 DnaK suppressor protein; hypothetical protein 1633641..1633868 Escherichia coli APEC O78 14481566 YP_007380765.1 CDS APECO78_07950 NC_020163.1 1633865 1634719 D COG0338 Site-specific DNA methylase; DNA adenine methylase 1633865..1634719 Escherichia coli APEC O78 14481567 YP_007380766.1 CDS APECO78_07955 NC_020163.1 1634716 1635546 D hypothetical protein 1634716..1635546 Escherichia coli APEC O78 14481568 YP_007380767.1 CDS APECO78_07960 NC_020163.1 1635546 1637918 D COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; replication protein A 1635546..1637918 Escherichia coli APEC O78 14481569 YP_007380768.1 CDS APECO78_07965 NC_020163.1 1638072 1638260 D hypothetical protein 1638072..1638260 Escherichia coli APEC O78 14481570 YP_007380769.1 CDS APECO78_07970 NC_020163.1 1638271 1638504 D COG1158 Transcription termination factor; Prophage protein 1638271..1638504 Escherichia coli APEC O78 14481571 YP_007380770.1 CDS APECO78_07975 NC_020163.1 1638880 1639611 D hypothetical protein 1638880..1639611 Escherichia coli APEC O78 14481572 YP_007380771.1 CDS APECO78_07980 NC_020163.1 1639611 1640228 D hypothetical protein 1639611..1640228 Escherichia coli APEC O78 14481573 YP_007380772.1 CDS APECO78_07985 NC_020163.1 1640269 1640772 R COG5518 Bacteriophage capsid portal protein; capsid portal protein complement(1640269..1640772) Escherichia coli APEC O78 14481574 YP_007380773.1 CDS APECO78_07990 NC_020163.1 1640793 1641200 D hypothetical protein 1640793..1641200 Escherichia coli APEC O78 14481575 YP_007380774.1 CDS APECO78_07995 NC_020163.1 1641197 1641682 D COG3499 Phage protein U; bacteriophage tail protein GpU 1641197..1641682 Escherichia coli APEC O78 14481576 YP_007380775.1 CDS APECO78_08000 NC_020163.1 1641679 1642779 D COG3500 Phage protein D; Late control protein D protein 1641679..1642779 Escherichia coli APEC O78 14481577 YP_007380776.1 CDS APECO78_08005 NC_020163.1 1642870 1643088 D prophage P2 OGR-like protein 1642870..1643088 Escherichia coli APEC O78 14481578 YP_007380777.1 CDS APECO78_08010 NC_020163.1 1643324 1645009 R COG2985 Predicted permease; transporter complement(1643324..1645009) Escherichia coli APEC O78 14481579 YP_007380778.1 CDS APECO78_08015 NC_020163.1 1645279 1645656 D hypothetical protein 1645279..1645656 Escherichia coli APEC O78 14481580 YP_007380779.1 CDS APECO78_08020 NC_020163.1 1645686 1645943 R COG0695 Glutaredoxin and related proteins; Glutaredoxin 1 complement(1645686..1645943) Escherichia coli APEC O78 14481581 YP_007380780.1 CDS APECO78_08025 NC_020163.1 1646103 1646390 D hypothetical protein 1646103..1646390 Escherichia coli APEC O78 14481582 YP_007380781.1 CDS APECO78_08030 NC_020163.1 1646374 1647096 D COG0778 Nitroreductase; nitroreductase A 1646374..1647096 Escherichia coli APEC O78 14481583 YP_007380782.1 CDS APECO78_08035 NC_020163.1 1647157 1648059 D COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); ribosomal protein S6 modification protein 1647157..1648059 Escherichia coli APEC O78 14481584 YP_007380783.1 CDS APECO78_08040 NC_020163.1 1648147 1648623 D hypothetical protein 1648147..1648623 Escherichia coli APEC O78 14481585 YP_007380784.1 CDS APECO78_08045 NC_020163.1 1648974 1650086 D COG0687 Spermidine/putrescine-binding periplasmic protein; putrescine transporter subunit: periplasmic-binding component of ABC superfamily 1648974..1650086 Escherichia coli APEC O78 14481586 YP_007380785.1 CDS potG NC_020163.1 1650181 1651314 D COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine transporter ATP-binding subunit 1650181..1651314 Escherichia coli APEC O78 14481587 YP_007380786.1 CDS APECO78_08055 NC_020163.1 1651324 1652277 D COG1176 ABC-type spermidine/putrescine transport system, permease component I; putrescine transporter subunit: membrane component of ABC superfamily 1651324..1652277 Escherichia coli APEC O78 14481588 YP_007380787.1 CDS APECO78_08060 NC_020163.1 1652274 1653119 D COG1177 ABC-type spermidine/putrescine transport system, permease component II; putrescine transporter subunit: membrane component of ABC superfamily 1652274..1653119 Escherichia coli APEC O78 14481589 YP_007380788.1 CDS APECO78_08065 NC_020163.1 1653179 1653667 D inner membrane protein 1653179..1653667 Escherichia coli APEC O78 14481590 YP_007380789.1 CDS rumB NC_020163.1 1653708 1654835 D COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA methyluridine methyltransferase 1653708..1654835 Escherichia coli APEC O78 14481591 YP_007380790.1 CDS APECO78_08075 NC_020163.1 1655010 1655741 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine 3rd transport system periplasmic binding protein ArtJ complement(1655010..1655741) Escherichia coli APEC O78 14481592 YP_007380791.1 CDS APECO78_08080 NC_020163.1 1656033 1656701 R COG4160 ABC-type arginine/histidine transport system, permease component; arginine transporter permease subunit ArtM complement(1656033..1656701) Escherichia coli APEC O78 14481593 YP_007380792.1 CDS APECO78_08085 NC_020163.1 1656701 1657417 R COG4215 ABC-type arginine transport system, permease component; arginine transporter permease subunit ArtQ complement(1656701..1657417) Escherichia coli APEC O78 14481594 YP_007380793.1 CDS APECO78_08090 NC_020163.1 1657424 1658155 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine ABC transporter substrate-binding protein complement(1657424..1658155) Escherichia coli APEC O78 14481595 YP_007380794.1 CDS APECO78_08095 NC_020163.1 1658173 1658901 R COG4161 ABC-type arginine transport system, ATPase component; arginine transport system ATP-binding protein complement(1658173..1658901) Escherichia coli APEC O78 14481596 YP_007380795.1 CDS APECO78_08100 NC_020163.1 1659119 1659634 R lipoprotein complement(1659119..1659634) Escherichia coli APEC O78 14481597 YP_007380796.1 CDS APECO78_08105 NC_020163.1 1659760 1660083 D COG0393 Uncharacterized conserved protein; hypothetical protein 1659760..1660083 Escherichia coli APEC O78 14481598 YP_007380797.1 CDS APECO78_08110 NC_020163.1 1660080 1660910 D COG3023 Negative regulator of beta-lactamase expression; N-acetylmuramoyl-L-alanine amidase AmiD 1660080..1660910 Escherichia coli APEC O78 14481599 YP_007380798.1 CDS APECO78_08115 NC_020163.1 1660907 1661920 R COG0451 Nucleoside-diphosphate-sugar epimerases; putative nucleotide di-P-sugar epimerase or dehydratase complement(1660907..1661920) Escherichia coli APEC O78 14481600 YP_007380799.1 CDS APECO78_08120 NC_020163.1 1662019 1663449 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(1662019..1663449) Escherichia coli APEC O78 14481601 YP_007380800.1 CDS APECO78_08125 NC_020163.1 1663460 1664461 R COG2008 Threonine aldolase; L-threonine aldolase complement(1663460..1664461) Escherichia coli APEC O78 14481602 YP_007380801.1 CDS APECO78_08130 NC_020163.1 1664498 1666216 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate dehydrogenase complement(1664498..1666216) Escherichia coli APEC O78 14481603 YP_007380802.1 CDS APECO78_08135 NC_020163.1 1666349 1667317 R COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; HCP oxidoreductase complement(1666349..1667317) Escherichia coli APEC O78 14481604 YP_007380803.1 CDS APECO78_08140 NC_020163.1 1667329 1668981 R COG1151 6Fe-6S prismane cluster-containing protein; hybrid cluster protein complement(1667329..1668981) Escherichia coli APEC O78 14481605 YP_007380804.1 CDS APECO78_08145 NC_020163.1 1669125 1670024 R COG2431 Predicted membrane protein; transporter complement(1669125..1670024) Escherichia coli APEC O78 14481606 YP_007380805.1 CDS APECO78_08150 NC_020163.1 1670519 1671214 R COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); aquaporin Z complement(1670519..1671214) Escherichia coli APEC O78 14481607 YP_007380806.1 CDS APECO78_08155 NC_020163.1 1671640 1673298 D COG3593 Predicted ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease 1671640..1673298 Escherichia coli APEC O78 14481608 YP_007380807.1 CDS APECO78_08160 NC_020163.1 1673295 1674287 R COG2990 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1673295..1674287) Escherichia coli APEC O78 14481609 YP_007380808.1 CDS APECO78_08165 NC_020163.1 1674402 1675517 D COG0845 Membrane-fusion protein; macrolide transporter subunit MacA 1674402..1675517 Escherichia coli APEC O78 14481610 YP_007380809.1 CDS APECO78_08170 NC_020163.1 1675514 1677460 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; macrolide ABC transporter ATP-binding protein/membrane protein 1675514..1677460 Escherichia coli APEC O78 14481611 YP_007380810.1 CDS APECO78_08175 NC_020163.1 1677533 1677757 R COG1278 Cold shock proteins; Cold shock-like protein cspD complement(1677533..1677757) Escherichia coli APEC O78 14481612 YP_007380811.1 CDS APECO78_08180 NC_020163.1 1678080 1678400 D COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adaptor protein ClpS 1678080..1678400 Escherichia coli APEC O78 14481613 YP_007380812.1 CDS clpA NC_020163.1 1678431 1680707 D COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit 1678431..1680707 Escherichia coli APEC O78 14481614 YP_007380813.1 CDS APECO78_08190 NC_020163.1 1681392 1681610 R COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 complement(1681392..1681610) Escherichia coli APEC O78 14484614 YP_007380814.1 CDS APECO78_08195 NC_020163.1 1681895 1682599 R COG2360 Leu/Phe-tRNA-protein transferase; leucyl/phenylalanyl-tRNA--protein transferase complement(1681895..1682599) Escherichia coli APEC O78 14481616 YP_007380815.1 CDS APECO78_08200 NC_020163.1 1682641 1684362 R COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components; cysteine/glutathione ABC transporter membrane/ATP-binding component complement(1682641..1684362) Escherichia coli APEC O78 14481617 YP_007380816.1 CDS APECO78_08205 NC_020163.1 1684363 1686129 R COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; cysteine/glutathione ABC transporter membrane/ATP-binding component complement(1684363..1686129) Escherichia coli APEC O78 14481618 YP_007380817.1 CDS APECO78_08210 NC_020163.1 1686252 1687217 R COG0492 Thioredoxin reductase; thioredoxin reductase complement(1686252..1687217) Escherichia coli APEC O78 14481619 YP_007380818.1 CDS APECO78_08215 NC_020163.1 1687761 1688255 D COG1522 Transcriptional regulators; leucine-responsive transcriptional regulator 1687761..1688255 Escherichia coli APEC O78 14481620 YP_007380819.1 CDS APECO78_08220 NC_020163.1 1688390 1692496 D COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; DNA translocase FtsK 1688390..1692496 Escherichia coli APEC O78 14481621 YP_007380820.1 CDS APECO78_08225 NC_020163.1 1692651 1693262 D COG2834 Outer membrane lipoprotein-sorting protein; outer-membrane lipoprotein carrier protein 1692651..1693262 Escherichia coli APEC O78 14481622 YP_007380821.1 CDS APECO78_08230 NC_020163.1 1693273 1694616 D COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA 1693273..1694616 Escherichia coli APEC O78 14481623 YP_007380822.1 CDS APECO78_08235 NC_020163.1 1694707 1695999 D COG0172 Seryl-tRNA synthetase; seryl-tRNA synthetase 1694707..1695999 Escherichia coli APEC O78 14481624 YP_007380823.1 CDS APECO78_08240 NC_020163.1 1696238 1698682 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase subunit A 1696238..1698682 Escherichia coli APEC O78 14481625 YP_007380824.1 CDS APECO78_08245 NC_020163.1 1698693 1699310 D COG0437 Fe-S-cluster-containing hydrogenase components 1; anaerobic dimethyl sulfoxide reductase subunit B 1698693..1699310 Escherichia coli APEC O78 14481626 YP_007380825.1 CDS APECO78_08250 NC_020163.1 1699312 1700175 D COG3302 DMSO reductase anchor subunit; dimethyl sulfoxide reductase, anaerobic subunit C 1699312..1700175 Escherichia coli APEC O78 14481627 YP_007380826.1 CDS APECO78_08255 NC_020163.1 1700211 1700837 R COG1335 Amidases related to nicotinamidase; hydrolase complement(1700211..1700837) Escherichia coli APEC O78 14481628 YP_007380827.1 CDS APECO78_08260 NC_020163.1 1701151 1702299 D COG0477 Permeases of the major facilitator superfamily; MFS family transporter protein 1701151..1702299 Escherichia coli APEC O78 14481629 YP_007380828.1 CDS APECO78_08265 NC_020163.1 1702509 1703939 D COG0531 Amino acid transporters; transporter 1702509..1703939 Escherichia coli APEC O78 14481630 YP_007380829.1 CDS APECO78_08270 NC_020163.1 1703940 1704848 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(1703940..1704848) Escherichia coli APEC O78 14481631 YP_007380830.1 CDS APECO78_08275 NC_020163.1 1704948 1705538 D COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); hypothetical protein 1704948..1705538 Escherichia coli APEC O78 14481632 YP_007380831.1 CDS pflA NC_020163.1 1705620 1706417 R COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase-activating enzyme 1 complement(1705620..1706417) Escherichia coli APEC O78 14481633 YP_007380832.1 CDS APECO78_08285 NC_020163.1 1706449 1707444 R COG0582 Integrase; site-specific recombinase, phage integrase family protein complement(1706449..1707444) Escherichia coli APEC O78 14481634 YP_007380833.1 CDS APECO78_08290 NC_020163.1 1707538 1707786 R Phage protein C complement(1707538..1707786) Escherichia coli APEC O78 14481635 YP_007380834.1 CDS APECO78_08295 NC_020163.1 1707954 1708310 D COG0184 Ribosomal protein S15P/S13E; phage regulatory protein 1707954..1708310 Escherichia coli APEC O78 14481636 YP_007380835.1 CDS APECO78_08300 NC_020163.1 1708321 1708491 D hypothetical protein 1708321..1708491 Escherichia coli APEC O78 14481637 YP_007380836.1 CDS APECO78_08305 NC_020163.1 1708488 1708988 D replication protein B 1708488..1708988 Escherichia coli APEC O78 14481638 YP_007380837.1 CDS APECO78_08310 NC_020163.1 1709052 1709264 D hypothetical protein 1709052..1709264 Escherichia coli APEC O78 14481639 YP_007380838.1 CDS APECO78_08315 NC_020163.1 1709279 1709524 D COG2238 Ribosomal protein S19E (S16A); hypothetical protein 1709279..1709524 Escherichia coli APEC O78 14481640 YP_007380839.1 CDS APECO78_08320 NC_020163.1 1709521 1709811 D hypothetical protein 1709521..1709811 Escherichia coli APEC O78 14481641 YP_007380840.1 CDS APECO78_08325 NC_020163.1 1709811 1710035 D COG1734 DnaK suppressor protein; C4-type zinc finger protein, DksA/TraR family 1709811..1710035 Escherichia coli APEC O78 14481642 YP_007380841.1 CDS APECO78_08330 NC_020163.1 1710032 1710307 D hypothetical protein 1710032..1710307 Escherichia coli APEC O78 14481643 YP_007380842.1 CDS APECO78_08335 NC_020163.1 1710297 1712582 D replication protein A 1710297..1712582 Escherichia coli APEC O78 14481644 YP_007380843.1 CDS APECO78_08340 NC_020163.1 1712582 1713034 D hypothetical protein 1712582..1713034 Escherichia coli APEC O78 14481645 YP_007380844.1 CDS APECO78_08345 NC_020163.1 1713034 1713240 D hypothetical protein 1713034..1713240 Escherichia coli APEC O78 14481646 YP_007380845.1 CDS APECO78_08350 NC_020163.1 1713464 1714195 D hypothetical protein 1713464..1714195 Escherichia coli APEC O78 14481647 YP_007380846.1 CDS APECO78_08355 NC_020163.1 1714306 1715088 D COG0058 Glucan phosphorylase; hypothetical protein 1714306..1715088 Escherichia coli APEC O78 14481648 YP_007380847.1 CDS APECO78_08360 NC_020163.1 1715437 1716471 R COG5518 Bacteriophage capsid portal protein; phage capsid protein complement(1715437..1716471) Escherichia coli APEC O78 14481649 YP_007380848.1 CDS APECO78_08365 NC_020163.1 1716471 1718243 R Terminase, ATPase subunit (GpP) complement(1716471..1718243) Escherichia coli APEC O78 14481650 YP_007380849.1 CDS APECO78_08370 NC_020163.1 1718417 1719271 D Phage capsid scaffolding protein 1718417..1719271 Escherichia coli APEC O78 14481651 YP_007380850.1 CDS APECO78_08375 NC_020163.1 1719330 1720403 D major capsid protein 1719330..1720403 Escherichia coli APEC O78 14481652 YP_007380851.1 CDS APECO78_08380 NC_020163.1 1720407 1721150 D small terminase subunit 1720407..1721150 Escherichia coli APEC O78 14481653 YP_007380852.1 CDS APECO78_08385 NC_020163.1 1721253 1721912 D Head completion/stabilization protein (GpL) 1721253..1721912 Escherichia coli APEC O78 14481654 YP_007380853.1 CDS APECO78_08390 NC_020163.1 1722159 1722584 D putative Protein lysB from bacteriophage P2 1722159..1722584 Escherichia coli APEC O78 14481655 YP_007380854.1 CDS APECO78_08395 NC_020163.1 1722571 1722729 D phage lysis protein 1722571..1722729 Escherichia coli APEC O78 14481656 YP_007380855.1 CDS APECO78_08400 NC_020163.1 1722692 1723159 D P2 phage tail completion protein R, GpR 1722692..1723159 Escherichia coli APEC O78 14481657 YP_007380856.1 CDS APECO78_08405 NC_020163.1 1723152 1723604 D Phage tail completion protein 1723152..1723604 Escherichia coli APEC O78 14481658 YP_007380857.1 CDS APECO78_08410 NC_020163.1 1723676 1724461 R hypothetical protein complement(1723676..1724461) Escherichia coli APEC O78 14481659 YP_007380858.1 CDS APECO78_08415 NC_020163.1 1724545 1725174 D COG4540 Phage P2 baseplate assembly protein gpV; Baseplate assembly protein GpV 1724545..1725174 Escherichia coli APEC O78 14481660 YP_007380859.1 CDS APECO78_08420 NC_020163.1 1725233 1725928 D COG3948 Phage-related baseplate assembly protein; baseplate assembly protein J 1725233..1725928 Escherichia coli APEC O78 14481661 YP_007380860.1 CDS APECO78_08425 NC_020163.1 1725921 1726451 D COG4385 Bacteriophage P2-related tail formation protein; phage tail protein I 1725921..1726451 Escherichia coli APEC O78 14481662 YP_007380861.1 CDS APECO78_08430 NC_020163.1 1726462 1728708 D COG5301 Phage-related tail fibre protein; putative tail fiber protein (GpH) 1726462..1728708 Escherichia coli APEC O78 14481663 YP_007380862.1 CDS APECO78_08435 NC_020163.1 1728712 1729239 D tail assembly chaperone gp38 1728712..1729239 Escherichia coli APEC O78 14481664 YP_007380863.1 CDS APECO78_08440 NC_020163.1 1729463 1729741 R putative SinR-like protein complement(1729463..1729741) Escherichia coli APEC O78 14481665 YP_007380864.1 CDS APECO78_08445 NC_020163.1 1729794 1729973 R hypothetical protein complement(1729794..1729973) Escherichia coli APEC O78 14481666 YP_007380865.1 CDS APECO78_08450 NC_020163.1 1730465 1731157 D hypothetical protein 1730465..1731157 Escherichia coli APEC O78 14481667 YP_007380866.1 CDS APECO78_08455 NC_020163.1 1731418 1732608 D COG3497 Phage tail sheath protein FI; major tail sheath protein FI 1731418..1732608 Escherichia coli APEC O78 14481668 YP_007380867.1 CDS APECO78_08460 NC_020163.1 1732621 1733139 D COG3498 Phage tail tube protein FII; phage major tail tube protein FII 1732621..1733139 Escherichia coli APEC O78 14481669 YP_007380868.1 CDS APECO78_08465 NC_020163.1 1733196 1733471 D hypothetical protein 1733196..1733471 Escherichia coli APEC O78 14481670 YP_007380869.1 CDS APECO78_08470 NC_020163.1 1733504 1733623 D putative prophage tail protein 1733504..1733623 Escherichia coli APEC O78 14481671 YP_007380870.1 CDS APECO78_08475 NC_020163.1 1733616 1736063 D COG0419 ATPase involved in DNA repair; hypothetical protein 1733616..1736063 Escherichia coli APEC O78 14481672 YP_007380871.1 CDS APECO78_08480 NC_020163.1 1736078 1736557 D COG3499 Phage protein U; gpU phage protein 1736078..1736557 Escherichia coli APEC O78 14481673 YP_007380872.1 CDS APECO78_08485 NC_020163.1 1736557 1737720 D COG3500 Phage protein D; Putative phage late control protein D 1736557..1737720 Escherichia coli APEC O78 14481674 YP_007380873.1 CDS APECO78_08490 NC_020163.1 1737766 1738020 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); DNA-binding transcriptional regulator 1737766..1738020 Escherichia coli APEC O78 14481675 YP_007380874.1 CDS APECO78_08495 NC_020163.1 1738339 1740621 R COG1882 Pyruvate-formate lyase; pyruvate formate-lyase complement(1738339..1740621) Escherichia coli APEC O78 14481676 YP_007380875.1 CDS APECO78_08500 NC_020163.1 1740676 1741533 R COG2116 Formate/nitrite family of transporters; formate transporter complement(1740676..1741533) Escherichia coli APEC O78 14481677 YP_007380876.1 CDS APECO78_08505 NC_020163.1 1741939 1743699 R COG1944 Uncharacterized conserved protein; hypothetical protein complement(1741939..1743699) Escherichia coli APEC O78 14481678 YP_007380877.1 CDS APECO78_08510 NC_020163.1 1743829 1744521 D COG2323 Predicted membrane protein; hypothetical protein 1743829..1744521 Escherichia coli APEC O78 14481679 YP_007380878.1 CDS APECO78_08515 NC_020163.1 1744720 1745808 D COG1932 Phosphoserine aminotransferase; 3-phosphoserine/phosphohydroxythreonine aminotransferase 1744720..1745808 Escherichia coli APEC O78 14481680 YP_007380879.1 CDS APECO78_08520 NC_020163.1 1745879 1747162 D COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 1745879..1747162 Escherichia coli APEC O78 14481681 YP_007380880.1 CDS APECO78_08525 NC_020163.1 1747331 1748095 D COG0501 Zn-dependent protease with chaperone function; putative heat shock protein 1747331..1748095 Escherichia coli APEC O78 14481682 YP_007380881.1 CDS APECO78_08530 NC_020163.1 1748268 1748951 D COG0283 Cytidylate kinase; cytidylate kinase 1748268..1748951 Escherichia coli APEC O78 14481683 YP_007380882.1 CDS APECO78_08535 NC_020163.1 1749062 1750735 D COG0539 Ribosomal protein S1; 30S ribosomal protein S1 1749062..1750735 Escherichia coli APEC O78 14481684 YP_007380883.1 CDS APECO78_08540 NC_020163.1 1750895 1751179 D COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit beta 1750895..1751179 Escherichia coli APEC O78 14481685 YP_007380884.1 CDS APECO78_08545 NC_020163.1 1751386 1753650 D COG0658 Predicted membrane metal-binding protein; ComEC family competence protein 1751386..1753650 Escherichia coli APEC O78 14481686 YP_007380885.1 CDS APECO78_08550 NC_020163.1 1753687 1755435 D COG1132 ABC-type multidrug transport system, ATPase and permease components; lipid transporter ATP-binding protein/permease 1753687..1755435 Escherichia coli APEC O78 14481687 YP_007380886.1 CDS lpxK NC_020163.1 1755432 1756418 D COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 1755432..1756418 Escherichia coli APEC O78 14481688 YP_007380887.1 CDS APECO78_08560 NC_020163.1 1756455 1757687 D COG3214 Uncharacterized protein conserved in bacteria; hypothetical protein 1756455..1757687 Escherichia coli APEC O78 14481689 YP_007380888.1 CDS APECO78_08565 NC_020163.1 1757739 1757921 D COG2835 Uncharacterized conserved protein; hypothetical protein 1757739..1757921 Escherichia coli APEC O78 14481690 YP_007380889.1 CDS APECO78_08570 NC_020163.1 1757918 1758664 D COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-manno-octulosonate cytidylyltransferase 1757918..1758664 Escherichia coli APEC O78 14481691 YP_007380890.1 CDS APECO78_08575 NC_020163.1 1758818 1759711 D hypothetical protein 1758818..1759711 Escherichia coli APEC O78 14481692 YP_007380891.1 CDS APECO78_08580 NC_020163.1 1759688 1760467 R COG1434 Uncharacterized conserved protein; hypothetical protein complement(1759688..1760467) Escherichia coli APEC O78 14481693 YP_007380892.1 CDS APECO78_08585 NC_020163.1 1760603 1761388 D COG0500 SAM-dependent methyltransferases; putative metallothionein SmtA 1760603..1761388 Escherichia coli APEC O78 14481694 YP_007380893.1 CDS APECO78_08590 NC_020163.1 1761385 1762707 D COG3006 Uncharacterized protein involved in chromosome partitioning; condesin subunit F 1761385..1762707 Escherichia coli APEC O78 14481695 YP_007380894.1 CDS APECO78_08595 NC_020163.1 1762688 1763392 D COG3095 Uncharacterized protein involved in chromosome partitioning; condesin subunit E 1762688..1763392 Escherichia coli APEC O78 14481696 YP_007380895.1 CDS mukB NC_020163.1 1763392 1767852 D COG3096 Uncharacterized protein involved in chromosome partitioning; cell division protein MukB 1763392..1767852 Escherichia coli APEC O78 14481697 YP_007380896.1 CDS APECO78_08605 NC_020163.1 1768113 1769960 D COG2989 Uncharacterized protein conserved in bacteria; murein L,D-transpeptidase 1768113..1769960 Escherichia coli APEC O78 14481698 YP_007380897.1 CDS APECO78_08610 NC_020163.1 1770141 1770689 D COG3108 Uncharacterized protein conserved in bacteria; hypothetical protein 1770141..1770689 Escherichia coli APEC O78 14481699 YP_007380898.1 CDS APECO78_08615 NC_020163.1 1770716 1771363 D COG0491 Zn-dependent hydrolases, including glyoxylases; metal-binding enzyme 1770716..1771363 Escherichia coli APEC O78 14481700 YP_007380899.1 CDS APECO78_08620 NC_020163.1 1771278 1771526 R hypothetical protein complement(1771278..1771526) Escherichia coli APEC O78 14481701 YP_007380900.1 CDS APECO78_08625 NC_020163.1 1771585 1772775 R COG1448 Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase complement(1771585..1772775) Escherichia coli APEC O78 14481702 YP_007380901.1 CDS APECO78_08630 NC_020163.1 1772774 1772944 D hypothetical protein 1772774..1772944 Escherichia coli APEC O78 14481703 YP_007380902.1 CDS APECO78_08635 NC_020163.1 1772960 1774048 R COG3203 Outer membrane protein (porin); outer membrane protein F complement(1772960..1774048) Escherichia coli APEC O78 14481704 YP_007380903.1 CDS APECO78_08640 NC_020163.1 1774650 1776050 R COG0017 Aspartyl/asparaginyl-tRNA synthetases; asparaginyl-tRNA synthetase complement(1774650..1776050) Escherichia coli APEC O78 14481705 YP_007380904.1 CDS APECO78_08645 NC_020163.1 1776219 1777421 R COG1488 Nicotinic acid phosphoribosyltransferase; nicotinate phosphoribosyltransferase complement(1776219..1777421) Escherichia coli APEC O78 14481706 YP_007380905.1 CDS pepN NC_020163.1 1777687 1780299 D COG0308 Aminopeptidase N; aminopeptidase N 1777687..1780299 Escherichia coli APEC O78 14481707 YP_007380906.1 CDS ssuB NC_020163.1 1780506 1781273 R COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; aliphatic sulfonates transport ATP-binding subunit complement(1780506..1781273) Escherichia coli APEC O78 14481708 YP_007380907.1 CDS APECO78_08660 NC_020163.1 1781270 1782061 R COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; alkanesulfonate transporter permease complement(1781270..1782061) Escherichia coli APEC O78 14481709 YP_007380908.1 CDS APECO78_08665 NC_020163.1 1782072 1783217 R COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; alkanesulfonate monooxygenase complement(1782072..1783217) Escherichia coli APEC O78 14481710 YP_007380909.1 CDS APECO78_08670 NC_020163.1 1783214 1784173 R COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; alkanesulfonate transporter subunit complement(1783214..1784173) Escherichia coli APEC O78 14481711 YP_007380910.1 CDS APECO78_08675 NC_020163.1 1784166 1784741 R COG0431 Predicted flavoprotein; NAD(P)H-dependent FMN reductase complement(1784166..1784741) Escherichia coli APEC O78 14481712 YP_007380911.1 CDS APECO78_08680 NC_020163.1 1785097 1785639 D COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein 1785097..1785639 Escherichia coli APEC O78 14481713 YP_007380912.1 CDS APECO78_08685 NC_020163.1 1785722 1786423 D COG3121 P pilus assembly protein, chaperone PapD; periplasmic pilin chaperone 1785722..1786423 Escherichia coli APEC O78 14481714 YP_007380913.1 CDS APECO78_08690 NC_020163.1 1786448 1789048 D COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein 1786448..1789048 Escherichia coli APEC O78 14481715 YP_007380914.1 CDS APECO78_08695 NC_020163.1 1789039 1790109 D fimbrial-like adhesin protein 1789039..1790109 Escherichia coli APEC O78 14481716 YP_007380915.1 CDS APECO78_08700 NC_020163.1 1790121 1790663 D COG3539 P pilus assembly protein, pilin FimA; fimbrial-like adhesin protein 1790121..1790663 Escherichia coli APEC O78 14481717 YP_007380916.1 CDS APECO78_08705 NC_020163.1 1790671 1791186 D COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like adhesin protein 1790671..1791186 Escherichia coli APEC O78 14481718 YP_007380917.1 CDS APECO78_08710 NC_020163.1 1791179 1791889 D COG3121 P pilus assembly protein, chaperone PapD; putativi pili assembly chaperone 1791179..1791889 Escherichia coli APEC O78 14481719 YP_007380918.1 CDS APECO78_08715 NC_020163.1 1792000 1793010 D COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 2 1792000..1793010 Escherichia coli APEC O78 14481720 YP_007380919.1 CDS APECO78_08720 NC_020163.1 1793184 1793726 D hypothetical protein 1793184..1793726 Escherichia coli APEC O78 14481721 YP_007380920.1 CDS APECO78_08725 NC_020163.1 1793723 1794832 R COG3217 Uncharacterized Fe-S protein; 2Fe-2S cluster-containing protein complement(1793723..1794832) Escherichia coli APEC O78 14481722 YP_007380921.1 CDS rlmL NC_020163.1 1795076 1797184 D COG0116 Predicted N6-adenine-specific DNA methylase; 23S rRNA m(2)G2445 methyltransferase 1795076..1797184 Escherichia coli APEC O78 14481723 YP_007380922.1 CDS APECO78_08735 NC_020163.1 1797196 1799103 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATPase component 1797196..1799103 Escherichia coli APEC O78 14481724 YP_007380923.1 CDS APECO78_08740 NC_020163.1 1799233 1800486 D COG2995 Uncharacterized paraquat-inducible protein A; paraquat-inducible membrane protein A 1799233..1800486 Escherichia coli APEC O78 14481725 YP_007380924.1 CDS APECO78_08745 NC_020163.1 1800491 1802131 D COG3008 Paraquat-inducible protein B; paraquat-inducible protein B 1800491..1802131 Escherichia coli APEC O78 14481726 YP_007380925.1 CDS APECO78_08750 NC_020163.1 1802128 1802691 D COG3009 Uncharacterized protein conserved in bacteria; lipoprotein 1802128..1802691 Escherichia coli APEC O78 14481727 YP_007380926.1 CDS APECO78_08755 NC_020163.1 1802947 1803114 D COG3130 Ribosome modulation factor; ribosome modulation factor 1802947..1803114 Escherichia coli APEC O78 14481728 YP_007380927.1 CDS APECO78_08760 NC_020163.1 1803184 1803702 R COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; hypothetical protein complement(1803184..1803702) Escherichia coli APEC O78 14481729 YP_007380928.1 CDS APECO78_08765 NC_020163.1 1803771 1805531 R COG1067 Predicted ATP-dependent protease; peptidase, S16 (Lon protease) family protein complement(1803771..1805531) Escherichia coli APEC O78 14481730 YP_007380929.1 CDS APECO78_08770 NC_020163.1 1805717 1806169 D COG3120 Uncharacterized protein conserved in bacteria; Ter macrodomain organizer matS-binding protein 1805717..1806169 Escherichia coli APEC O78 14481731 YP_007380930.1 CDS APECO78_08775 NC_020163.1 1806245 1807297 R COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane protein A complement(1806245..1807297) Escherichia coli APEC O78 14481732 YP_007380931.1 CDS APECO78_08780 NC_020163.1 1807654 1808163 R COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation; SOS cell division inhibitor complement(1807654..1808163) Escherichia coli APEC O78 14481733 YP_007380932.1 CDS APECO78_08785 NC_020163.1 1808382 1809011 D COG3070 Regulator of competence-specific genes; hypothetical protein 1808382..1809011 Escherichia coli APEC O78 14481734 YP_007380933.1 CDS APECO78_08790 NC_020163.1 1808974 1811136 R COG1289 Predicted membrane protein; hypothetical protein complement(1808974..1811136) Escherichia coli APEC O78 14481735 YP_007380934.1 CDS APECO78_08795 NC_020163.1 1811146 1811592 R COG3304 Predicted membrane protein; hypothetical protein complement(1811146..1811592) Escherichia coli APEC O78 14481736 YP_007380935.1 CDS helD NC_020163.1 1811715 1813769 D COG0210 Superfamily I DNA and RNA helicases; DNA helicase IV 1811715..1813769 Escherichia coli APEC O78 14481737 YP_007380936.1 CDS APECO78_08805 NC_020163.1 1813801 1814259 R COG1803 Methylglyoxal synthase; methylglyoxal synthase complement(1813801..1814259) Escherichia coli APEC O78 14481738 YP_007380937.1 CDS APECO78_08810 NC_020163.1 1814355 1815017 R COG3110 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1814355..1815017) Escherichia coli APEC O78 14481739 YP_007380938.1 CDS APECO78_08815 NC_020163.1 1815190 1815603 D COG1832 Predicted CoA-binding protein; CoA-binding protein 1815190..1815603 Escherichia coli APEC O78 14481740 YP_007380939.1 CDS APECO78_08820 NC_020163.1 1815648 1815965 R COG3785 Uncharacterized conserved protein; heat shock protein HspQ complement(1815648..1815965) Escherichia coli APEC O78 14481741 YP_007380940.1 CDS APECO78_08825 NC_020163.1 1816023 1817213 R COG1092 Predicted SAM-dependent methyltransferases; 23S rRNA m(5)C1962 methyltransferase complement(1816023..1817213) Escherichia coli APEC O78 14481742 YP_007380941.1 CDS APECO78_08830 NC_020163.1 1817308 1817586 D COG1254 Acylphosphatases; acylphosphatase 1817308..1817586 Escherichia coli APEC O78 14481743 YP_007380942.1 CDS APECO78_08835 NC_020163.1 1817583 1817912 R COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit; sulfur transfer protein TusE complement(1817583..1817912) Escherichia coli APEC O78 14481744 YP_007380943.1 CDS APECO78_08840 NC_020163.1 1818003 1818662 R COG0670 Integral membrane protein, interacts with FtsH; HflBKC-binding inner membrane protein complement(1818003..1818662) Escherichia coli APEC O78 14481745 YP_007380944.1 CDS APECO78_08845 NC_020163.1 1819383 1820501 D COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase-1 small chain 1819383..1820501 Escherichia coli APEC O78 14484615 YP_007380945.1 CDS APECO78_08850 NC_020163.1 1820498 1822291 D COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 1 large subunit 1820498..1822291 Escherichia coli APEC O78 14481747 YP_007380946.1 CDS APECO78_08855 NC_020163.1 1822310 1823017 D COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; hydrogenase 1 b-type cytochrome subunit 1822310..1823017 Escherichia coli APEC O78 14481748 YP_007380947.1 CDS APECO78_08860 NC_020163.1 1823014 1823601 D COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 1 maturation protease 1823014..1823601 Escherichia coli APEC O78 14481749 YP_007380948.1 CDS APECO78_08865 NC_020163.1 1823598 1823996 D COG0526 Thiol-disulfide isomerase and thioredoxins; hydrogenase-1 operon protein HyaE 1823598..1823996 Escherichia coli APEC O78 14481750 YP_007380949.1 CDS APECO78_08870 NC_020163.1 1823993 1824850 D hydrogenase-1 operon protein HyaF 1823993..1824850 Escherichia coli APEC O78 14481751 YP_007380950.1 CDS APECO78_08875 NC_020163.1 1824984 1826528 D COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome bd-II oxidase subunit 1 1824984..1826528 Escherichia coli APEC O78 14481752 YP_007380951.1 CDS APECO78_08880 NC_020163.1 1826540 1827676 D COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome bd-II oxidase subunit 2 1826540..1827676 Escherichia coli APEC O78 14481753 YP_007380952.1 CDS APECO78_08885 NC_020163.1 1827689 1827781 D hypothetical protein 1827689..1827781 Escherichia coli APEC O78 14481754 YP_007380953.1 CDS APECO78_08890 NC_020163.1 1827861 1829159 D phosphoanhydride phosphorylase 1827861..1829159 Escherichia coli APEC O78 14481755 YP_007380954.1 CDS APECO78_08895 NC_020163.1 1829279 1831459 R COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; cryptic autophosphorylating protein tyrosine kinase Etk complement(1829279..1831459) Escherichia coli APEC O78 14481756 YP_007380955.1 CDS APECO78_08900 NC_020163.1 1831479 1831925 R COG0394 Protein-tyrosine-phosphatase; phosphotyrosine-protein phosphatase complement(1831479..1831925) Escherichia coli APEC O78 14481757 YP_007380956.1 CDS APECO78_08905 NC_020163.1 1831913 1833052 R COG1596 Periplasmic protein involved in polysaccharide export; putative polysaccharide export protein gfcE precursor complement(1831913..1833052) Escherichia coli APEC O78 14481758 YP_007380957.1 CDS APECO78_08910 NC_020163.1 1833098 1835194 R hypothetical protein complement(1833098..1835194) Escherichia coli APEC O78 14481759 YP_007380958.1 CDS APECO78_08915 NC_020163.1 1835194 1835940 R hypothetical protein complement(1835194..1835940) Escherichia coli APEC O78 14481760 YP_007380959.1 CDS APECO78_08920 NC_020163.1 1835937 1836581 R putative outer membrane lipoprotein complement(1835937..1836581) Escherichia coli APEC O78 14481761 YP_007380960.1 CDS APECO78_08925 NC_020163.1 1836688 1836993 R hypothetical protein complement(1836688..1836993) Escherichia coli APEC O78 14481762 YP_007380961.1 CDS APECO78_08930 NC_020163.1 1837435 1837647 R COG1278 Cold shock proteins; cold shock-like protein CspH complement(1837435..1837647) Escherichia coli APEC O78 14481763 YP_007380962.1 CDS APECO78_08935 NC_020163.1 1837933 1838145 D COG1278 Cold shock proteins; cold shock protein CspG 1837933..1838145 Escherichia coli APEC O78 14481764 YP_007380963.1 CDS APECO78_08940 NC_020163.1 1838286 1838549 D cold shock gene 1838286..1838549 Escherichia coli APEC O78 14481765 YP_007380964.1 CDS APECO78_08945 NC_020163.1 1838539 1838712 D regulator of phosphatidylethanolamine synthesis 1838539..1838712 Escherichia coli APEC O78 14481766 YP_007380965.1 CDS APECO78_08950 NC_020163.1 1838761 1839834 R COG0348 Polyferredoxin; putative 4Fe-4S membrane protein complement(1838761..1839834) Escherichia coli APEC O78 14481767 YP_007380966.1 CDS APECO78_08955 NC_020163.1 1839906 1842650 R COG0642 Signal transduction histidine kinase; hybrid sensory histidine kinase TorS complement(1839906..1842650) Escherichia coli APEC O78 14481768 YP_007380967.1 CDS APECO78_08960 NC_020163.1 1842733 1843761 D COG1879 ABC-type sugar transport system, periplasmic component; TMAO reductase system periplasmic protein TorT 1842733..1843761 Escherichia coli APEC O78 14481769 YP_007380968.1 CDS APECO78_08965 NC_020163.1 1843734 1844426 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator TorR complement(1843734..1844426) Escherichia coli APEC O78 14481770 YP_007380969.1 CDS APECO78_08970 NC_020163.1 1844556 1845728 D COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; trimethylamine N-oxide reductase cytochrome c-type subunit 1844556..1845728 Escherichia coli APEC O78 14481771 YP_007380970.1 CDS APECO78_08975 NC_020163.1 1845728 1848274 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; trimethylamine N-oxide reductase I catalytic subunit 1845728..1848274 Escherichia coli APEC O78 14481772 YP_007380971.1 CDS torD NC_020163.1 1848271 1848870 D COG3381 Uncharacterized component of anaerobic dehydrogenases; chaperone protein TorD 1848271..1848870 Escherichia coli APEC O78 14481773 YP_007380972.1 CDS APECO78_08985 NC_020163.1 1848963 1849268 R chaperone-modulator protein CbpM complement(1848963..1849268) Escherichia coli APEC O78 14481774 YP_007380973.1 CDS APECO78_08990 NC_020163.1 1849268 1850188 R COG2214 DnaJ-class molecular chaperone; curved DNA-binding protein CbpA complement(1849268..1850188) Escherichia coli APEC O78 14481775 YP_007380974.1 CDS APECO78_08995 NC_020163.1 1850448 1851707 D hypothetical protein 1850448..1851707 Escherichia coli APEC O78 14481776 YP_007380975.1 CDS APECO78_09000 NC_020163.1 1851999 1853240 D glucose-1-phosphatase/inositol phosphatase 1851999..1853240 Escherichia coli APEC O78 14481777 YP_007380976.1 CDS APECO78_09005 NC_020163.1 1853278 1853505 R hypothetical protein complement(1853278..1853505) Escherichia coli APEC O78 14481778 YP_007380977.1 CDS APECO78_09010 NC_020163.1 1853526 1854122 R COG0655 Multimeric flavodoxin WrbA; Trp repressor binding protein complement(1853526..1854122) Escherichia coli APEC O78 14481779 YP_007380978.1 CDS APECO78_09015 NC_020163.1 1854495 1854668 D COG3729 General stress protein; Stress-induced protein, KGG, repeat protein 1854495..1854668 Escherichia coli APEC O78 14481780 YP_007380979.1 CDS APECO78_09020 NC_020163.1 1854751 1856079 R COG2233 Xanthine/uracil permeases; putative transport protein complement(1854751..1856079) Escherichia coli APEC O78 14481781 YP_007380980.1 CDS APECO78_09025 NC_020163.1 1856100 1856594 R COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; putative oxidoreductase, flavin:NADH component complement(1856100..1856594) Escherichia coli APEC O78 14481782 YP_007380981.1 CDS APECO78_09030 NC_020163.1 1856605 1857195 R COG0778 Nitroreductase; malonic semialdehyde reductase complement(1856605..1857195) Escherichia coli APEC O78 14481783 YP_007380982.1 CDS APECO78_09035 NC_020163.1 1857205 1858005 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); enzyme of the alternative pyrimidine degradation pathway complement(1857205..1858005) Escherichia coli APEC O78 14481784 YP_007380983.1 CDS APECO78_09040 NC_020163.1 1858013 1858399 R COG0251 Putative translation initiation inhibitor, yjgF family; hypothetical protein complement(1858013..1858399) Escherichia coli APEC O78 14481785 YP_007380984.1 CDS APECO78_09045 NC_020163.1 1858411 1859103 R COG1335 Amidases related to nicotinamidase; synthetase complement(1858411..1859103) Escherichia coli APEC O78 14481786 YP_007380985.1 CDS APECO78_09050 NC_020163.1 1859103 1860194 R COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; monooxygenase of the alternative pyrimidine degradation pathway complement(1859103..1860194) Escherichia coli APEC O78 14481787 YP_007380986.1 CDS APECO78_09055 NC_020163.1 1860482 1861120 D COG1309 Transcriptional regulator; RutR transcriptional dual regulator 1860482..1861120 Escherichia coli APEC O78 14481788 YP_007380987.1 CDS putA NC_020163.1 1861160 1865122 R COG0506 Proline dehydrogenase; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1861160..1865122) Escherichia coli APEC O78 14481789 YP_007380988.1 CDS APECO78_09065 NC_020163.1 1865544 1867052 D COG0591 Na+/proline symporter; proline:sodium symporter PutP 1865544..1867052 Escherichia coli APEC O78 14481790 YP_007380989.1 CDS APECO78_09070 NC_020163.1 1867595 1868425 D COG0672 High-affinity Fe2+/Pb2+ permease; high-affinity Fe2+/Pb2+ permease 1867595..1868425 Escherichia coli APEC O78 14481791 YP_007380990.1 CDS APECO78_09075 NC_020163.1 1868483 1869610 D COG2822 Predicted periplasmic lipoprotein involved in iron transport; inactive ferrous ion transporter periplasmic protein EfeO 1868483..1869610 Escherichia coli APEC O78 14481792 YP_007380991.1 CDS APECO78_09080 NC_020163.1 1869616 1870887 D COG2837 Predicted iron-dependent peroxidase; hypothetical protein 1869616..1870887 Escherichia coli APEC O78 14481793 YP_007380992.1 CDS APECO78_09085 NC_020163.1 1871506 1872294 D COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; hypothetical protein 1871506..1872294 Escherichia coli APEC O78 14481794 YP_007380993.1 CDS APECO78_09090 NC_020163.1 1872344 1872757 R PGA biosynthesis protein complement(1872344..1872757) Escherichia coli APEC O78 14481795 YP_007380994.1 CDS APECO78_09095 NC_020163.1 1872759 1874084 R COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; N-glycosyltransferase complement(1872759..1874084) Escherichia coli APEC O78 14481796 YP_007380995.1 CDS APECO78_09100 NC_020163.1 1874077 1876095 R COG0726 Predicted xylanase/chitin deacetylase; outer membrane N-deacetylase complement(1874077..1876095) Escherichia coli APEC O78 14481797 YP_007380996.1 CDS APECO78_09105 NC_020163.1 1876104 1878527 R COG0457 FOG: TPR repeat; outer membrane protein PgaA complement(1876104..1878527) Escherichia coli APEC O78 14481798 YP_007380997.1 CDS APECO78_09110 NC_020163.1 1879114 1880472 D COG2199 FOG: GGDEF domain; diguanylate cyclase 1879114..1880472 Escherichia coli APEC O78 14481799 YP_007380998.1 CDS APECO78_09115 NC_020163.1 1880513 1881379 R COG2801 Transposase and inactivated derivatives; IS3 element transposase complement(1880513..1881379) Escherichia coli APEC O78 14481800 YP_007380999.1 CDS APECO78_09120 NC_020163.1 1881376 1881675 R COG2963 Transposase and inactivated derivatives; IS3 element protein InsE complement(1881376..1881675) Escherichia coli APEC O78 14481801 YP_007381000.1 CDS APECO78_09125 NC_020163.1 1881778 1882269 D COG0331 (acyl-carrier-protein) S-malonyltransferase; hypothetical protein 1881778..1882269 Escherichia coli APEC O78 14481802 YP_007381001.1 CDS APECO78_09130 NC_020163.1 1882266 1883252 D inner membrane protein 1882266..1883252 Escherichia coli APEC O78 14481803 YP_007381002.1 CDS APECO78_09135 NC_020163.1 1883947 1884885 D COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; 2-ketoacid reductase 1883947..1884885 Escherichia coli APEC O78 14484616 YP_007381003.1 CDS APECO78_09140 NC_020163.1 1884940 1885677 D COG1387 Histidinol phosphatase and related hydrolases of the PHP family; hydrolase 1884940..1885677 Escherichia coli APEC O78 14481805 YP_007381004.1 CDS APECO78_09145 NC_020163.1 1885701 1886255 D COG3381 Uncharacterized component of anaerobic dehydrogenases; hypothetical protein 1885701..1886255 Escherichia coli APEC O78 14481806 YP_007381005.1 CDS APECO78_09150 NC_020163.1 1886357 1886848 D inner membrane protein 1886357..1886848 Escherichia coli APEC O78 14481807 YP_007381006.1 CDS APECO78_09155 NC_020163.1 1886912 1887745 R COG1462 Uncharacterized protein involved in formation of curli polymers; curli production assembly/transport protein CsgG complement(1886912..1887745) Escherichia coli APEC O78 14481808 YP_007381007.1 CDS APECO78_09160 NC_020163.1 1887772 1888188 R curli assembly protein CsgF complement(1887772..1888188) Escherichia coli APEC O78 14481809 YP_007381008.1 CDS APECO78_09165 NC_020163.1 1888213 1888602 R COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; curli assembly protein CsgE complement(1888213..1888602) Escherichia coli APEC O78 14481810 YP_007381009.1 CDS APECO78_09170 NC_020163.1 1888607 1889257 R COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional regulator CsgD complement(1888607..1889257) Escherichia coli APEC O78 14481811 YP_007381010.1 CDS APECO78_09175 NC_020163.1 1890011 1890466 D curlin minor subunit CsgB 1890011..1890466 Escherichia coli APEC O78 14481812 YP_007381011.1 CDS APECO78_09180 NC_020163.1 1890507 1890962 D major curlin subunit 1890507..1890962 Escherichia coli APEC O78 14481813 YP_007381012.1 CDS csgC NC_020163.1 1891021 1891353 D curli assembly protein CsgC 1891021..1891353 Escherichia coli APEC O78 14481814 YP_007381013.1 CDS APECO78_09190 NC_020163.1 1891474 1891785 D COG0551 Zn-finger domain associated with topoisomerase type I; hypothetical protein 1891474..1891785 Escherichia coli APEC O78 14481815 YP_007381014.1 CDS APECO78_09195 NC_020163.1 1891880 1892413 D COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; RNase III inhibitor 1891880..1892413 Escherichia coli APEC O78 14481816 YP_007381015.1 CDS APECO78_09200 NC_020163.1 1892415 1893836 D COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; Putative synthase 1892415..1893836 Escherichia coli APEC O78 14481817 YP_007381016.1 CDS opgC NC_020163.1 1893844 1895001 R glucans biosynthesis protein complement(1893844..1895001) Escherichia coli APEC O78 14481818 YP_007381017.1 CDS mdoG NC_020163.1 1895395 1896930 D COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein G 1895395..1896930 Escherichia coli APEC O78 14481819 YP_007381018.1 CDS APECO78_09215 NC_020163.1 1896923 1899466 D COG2943 Membrane glycosyltransferase; glucosyltransferase MdoH 1896923..1899466 Escherichia coli APEC O78 14481820 YP_007381019.1 CDS APECO78_09220 NC_020163.1 1899639 1899866 D COG5645 Predicted periplasmic lipoprotein; hypothetical protein 1899639..1899866 Escherichia coli APEC O78 14481821 YP_007381020.1 CDS APECO78_09225 NC_020163.1 1899867 1900241 R secY/secA suppressor protein complement(1899867..1900241) Escherichia coli APEC O78 14481822 YP_007381021.1 CDS APECO78_09230 NC_020163.1 1900324 1901550 R COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein mdtG complement(1900324..1901550) Escherichia coli APEC O78 14481823 YP_007381022.1 CDS APECO78_09235 NC_020163.1 1901722 1902642 R COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase complement(1901722..1902642) Escherichia coli APEC O78 14481824 YP_007381023.1 CDS APECO78_09240 NC_020163.1 1902867 1903919 D COG1054 Predicted sulfurtransferase; rhodanese-related sulfurtransferase 1902867..1903919 Escherichia coli APEC O78 14481825 YP_007381024.1 CDS APECO78_09245 NC_020163.1 1903961 1904536 R COG2353 Uncharacterized conserved protein; hypothetical protein complement(1903961..1904536) Escherichia coli APEC O78 14481826 YP_007381025.1 CDS APECO78_09250 NC_020163.1 1904540 1905106 R COG3038 Cytochrome B561; cytochrome complement(1904540..1905106) Escherichia coli APEC O78 14481827 YP_007381026.1 CDS APECO78_09255 NC_020163.1 1905367 1905480 R hypothetical protein complement(1905367..1905480) Escherichia coli APEC O78 14481828 YP_007381027.1 CDS solA NC_020163.1 1905528 1906646 R COG0665 Glycine/D-amino acid oxidases (deaminating); N-methyltryptophan oxidase complement(1905528..1906646) Escherichia coli APEC O78 14481829 YP_007381028.1 CDS APECO78_09265 NC_020163.1 1906761 1907015 R biofilm formation regulatory protein BssS complement(1906761..1907015) Escherichia coli APEC O78 14481830 YP_007381029.1 CDS APECO78_09270 NC_020163.1 1907305 1907550 R DNA-damage-inducible protein I complement(1907305..1907550) Escherichia coli APEC O78 14481831 YP_007381030.1 CDS APECO78_09275 NC_020163.1 1907624 1908670 R COG0418 Dihydroorotase; dihydroorotase complement(1907624..1908670) Escherichia coli APEC O78 14481832 YP_007381031.1 CDS APECO78_09280 NC_020163.1 1908776 1909336 R putative lipoprotein yceB complement(1908776..1909336) Escherichia coli APEC O78 14481833 YP_007381032.1 CDS APECO78_09285 NC_020163.1 1909470 1910117 R COG2999 Glutaredoxin 2; glutaredoxin complement(1909470..1910117) Escherichia coli APEC O78 14481834 YP_007381033.1 CDS APECO78_09290 NC_020163.1 1910181 1911389 R COG0477 Permeases of the major facilitator superfamily; putative transport protein complement(1910181..1911389) Escherichia coli APEC O78 14481835 YP_007381034.1 CDS APECO78_09295 NC_020163.1 1911625 1912209 D COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-S5-alanine N-acetyltransferase 1911625..1912209 Escherichia coli APEC O78 14481836 YP_007381035.1 CDS APECO78_09300 NC_020163.1 1912220 1912867 D COG3132 Uncharacterized protein conserved in bacteria; hypothetical protein 1912220..1912867 Escherichia coli APEC O78 14481837 YP_007381036.1 CDS APECO78_09305 NC_020163.1 1912869 1913792 D COG0673 Predicted dehydrogenases and related proteins; oxidoreductase 1912869..1913792 Escherichia coli APEC O78 14481838 YP_007381037.1 CDS APECO78_09310 NC_020163.1 1913902 1915437 D COG0728 Uncharacterized membrane protein, putative virulence factor; hypothetical protein 1913902..1915437 Escherichia coli APEC O78 14481839 YP_007381038.1 CDS APECO78_09315 NC_020163.1 1915477 1915893 R COG3418 Flagellar biosynthesis/type III secretory pathway chaperone; flagella synthesis chaperone protein FlgN complement(1915477..1915893) Escherichia coli APEC O78 14481840 YP_007381039.1 CDS APECO78_09320 NC_020163.1 1915898 1916191 R COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor); anti-sigma-28 factor FlgM complement(1915898..1916191) Escherichia coli APEC O78 14481841 YP_007381040.1 CDS flgA NC_020163.1 1916267 1916926 R COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA complement(1916267..1916926) Escherichia coli APEC O78 14481842 YP_007381041.1 CDS flgB NC_020163.1 1917081 1917497 D COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB 1917081..1917497 Escherichia coli APEC O78 14481843 YP_007381042.1 CDS APECO78_09335 NC_020163.1 1917501 1917905 D COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC 1917501..1917905 Escherichia coli APEC O78 14481844 YP_007381043.1 CDS flgD NC_020163.1 1917917 1918612 D COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 1917917..1918612 Escherichia coli APEC O78 14481845 YP_007381044.1 CDS APECO78_09345 NC_020163.1 1918637 1919842 D COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 1918637..1919842 Escherichia coli APEC O78 14481846 YP_007381045.1 CDS APECO78_09350 NC_020163.1 1919862 1920617 D COG4787 Flagellar basal body rod protein; flagellar basal body rod protein FlgF 1919862..1920617 Escherichia coli APEC O78 14481847 YP_007381046.1 CDS APECO78_09355 NC_020163.1 1920789 1921571 D COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG 1920789..1921571 Escherichia coli APEC O78 14481848 YP_007381047.1 CDS APECO78_09360 NC_020163.1 1921624 1922322 D COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 1921624..1922322 Escherichia coli APEC O78 14481849 YP_007381048.1 CDS APECO78_09365 NC_020163.1 1922334 1923431 D COG1706 Flagellar basal-body P-ring protein; flagellar basal-body P-ring protein FlgI 1922334..1923431 Escherichia coli APEC O78 14481850 YP_007381049.1 CDS APECO78_09370 NC_020163.1 1923431 1924372 D COG3951 Rod binding protein; flagellar rod assembly protein/muramidase FlgJ 1923431..1924372 Escherichia coli APEC O78 14481851 YP_007381050.1 CDS flgK NC_020163.1 1924438 1926081 D COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK 1924438..1926081 Escherichia coli APEC O78 14481852 YP_007381051.1 CDS APECO78_09380 NC_020163.1 1926093 1927046 D COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL 1926093..1927046 Escherichia coli APEC O78 14481853 YP_007381052.1 CDS rne NC_020163.1 1927243 1930428 R COG1530 Ribonucleases G and E; ribonuclease E complement(1927243..1930428) Escherichia coli APEC O78 14481854 YP_007381053.1 CDS APECO78_09390 NC_020163.1 1931001 1931960 D COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridylate synthase C 1931001..1931960 Escherichia coli APEC O78 14481855 YP_007381054.1 CDS APECO78_09395 NC_020163.1 1932072 1932656 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein complement(1932072..1932656) Escherichia coli APEC O78 14481856 YP_007381055.1 CDS APECO78_09400 NC_020163.1 1932855 1933376 D COG1399 Predicted metal-binding, possibly nucleic acid-binding protein; hypothetical protein 1932855..1933376 Escherichia coli APEC O78 14481857 YP_007381056.1 CDS APECO78_09405 NC_020163.1 1933428 1933601 D COG0333 Ribosomal protein L32; 50S ribosomal protein L32 1933428..1933601 Escherichia coli APEC O78 14481858 YP_007381057.1 CDS APECO78_09410 NC_020163.1 1933682 1934752 D COG0416 Fatty acid/phospholipid biosynthesis enzyme; putative glycerol-3-phosphate acyltransferase PlsX 1933682..1934752 Escherichia coli APEC O78 14481859 YP_007381058.1 CDS APECO78_09415 NC_020163.1 1934820 1935773 D COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-(acyl carrier protein) synthase III 1934820..1935773 Escherichia coli APEC O78 14481860 YP_007381059.1 CDS APECO78_09420 NC_020163.1 1935789 1936718 D COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl-CoA-[acyl-carrier-protein] transacylase 1935789..1936718 Escherichia coli APEC O78 14481861 YP_007381060.1 CDS fabG NC_020163.1 1936731 1937465 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-(acyl-carrier-protein) reductase 1936731..1937465 Escherichia coli APEC O78 14481862 YP_007381061.1 CDS APECO78_09430 NC_020163.1 1937676 1937912 D COG0236 Acyl carrier protein; hypothetical protein 1937676..1937912 Escherichia coli APEC O78 14481863 YP_007381062.1 CDS APECO78_09435 NC_020163.1 1938000 1939241 D COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase II 1938000..1939241 Escherichia coli APEC O78 14481864 YP_007381063.1 CDS APECO78_09440 NC_020163.1 1939361 1940170 D COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; 4-amino-4-deoxychorismate lyase 1939361..1940170 Escherichia coli APEC O78 14481865 YP_007381064.1 CDS APECO78_09445 NC_020163.1 1940173 1941195 D COG1559 Predicted periplasmic solute-binding protein; putative thymidylate kinase 1940173..1941195 Escherichia coli APEC O78 14481866 YP_007381065.1 CDS APECO78_09450 NC_020163.1 1941185 1941826 D COG0125 Thymidylate kinase; thymidylate kinase 1941185..1941826 Escherichia coli APEC O78 14481867 YP_007381066.1 CDS APECO78_09455 NC_020163.1 1941823 1942827 D COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 1941823..1942827 Escherichia coli APEC O78 14481868 YP_007381067.1 CDS APECO78_09460 NC_020163.1 1942838 1943635 D COG0084 Mg-dependent DNase; DNAse 1942838..1943635 Escherichia coli APEC O78 14481869 YP_007381068.1 CDS APECO78_09465 NC_020163.1 1943930 1945363 D COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system glucose-specific transporter subunit IIBC 1943930..1945363 Escherichia coli APEC O78 14481870 YP_007381069.1 CDS APECO78_09470 NC_020163.1 1945423 1947612 R COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; ferric-rhodotorulic acid outer membrane transporter complement(1945423..1947612) Escherichia coli APEC O78 14481871 YP_007381070.1 CDS APECO78_09475 NC_020163.1 1947946 1948305 D COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; purine nucleoside phosphoramidase 1947946..1948305 Escherichia coli APEC O78 14481872 YP_007381071.1 CDS APECO78_09480 NC_020163.1 1948308 1948685 D COG5633 Predicted periplasmic lipoprotein; hypothetical protein 1948308..1948685 Escherichia coli APEC O78 14481873 YP_007381072.1 CDS APECO78_09485 NC_020163.1 1948699 1949340 D COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family); hypothetical protein 1948699..1949340 Escherichia coli APEC O78 14481874 YP_007381073.1 CDS thiK NC_020163.1 1949321 1950145 D COG0510 Predicted choline kinase involved in LPS biosynthesis; thiamine kinase 1949321..1950145 Escherichia coli APEC O78 14481875 YP_007381074.1 CDS APECO78_09495 NC_020163.1 1950156 1951181 D COG1472 Beta-glucosidase-related glycosidases; beta-hexosaminidase 1950156..1951181 Escherichia coli APEC O78 14481876 YP_007381075.1 CDS APECO78_09500 NC_020163.1 1951204 1951746 D COG3150 Predicted esterase; hypothetical protein 1951204..1951746 Escherichia coli APEC O78 14481877 YP_007381076.1 CDS APECO78_09505 NC_020163.1 1952154 1953458 D COG1252 NADH dehydrogenase, FAD-containing subunit; respiratory NADH dehydrogenase 2/cupric reductase 1952154..1953458 Escherichia coli APEC O78 14481878 YP_007381077.1 CDS APECO78_09510 NC_020163.1 1953685 1954224 D COG3134 Predicted outer membrane lipoprotein; hypothetical protein 1953685..1954224 Escherichia coli APEC O78 14481879 YP_007381078.1 CDS APECO78_09515 NC_020163.1 1954286 1954918 R COG1309 Transcriptional regulator; hypothetical protein complement(1954286..1954918) Escherichia coli APEC O78 14481880 YP_007381079.1 CDS APECO78_09520 NC_020163.1 1955159 1955416 D hypothetical protein 1955159..1955416 Escherichia coli APEC O78 14481881 YP_007381080.1 CDS APECO78_09525 NC_020163.1 1955499 1956461 R COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase complement(1955499..1956461) Escherichia coli APEC O78 14481882 YP_007381081.1 CDS APECO78_09530 NC_020163.1 1956605 1960051 R COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor complement(1956605..1960051) Escherichia coli APEC O78 14481883 YP_007381082.1 CDS APECO78_09535 NC_020163.1 1960179 1961252 R COG4763 Predicted membrane protein; putative inner membrane protein complement(1960179..1961252) Escherichia coli APEC O78 14481884 YP_007381083.1 CDS APECO78_09540 NC_020163.1 1961514 1962713 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolC 1961514..1962713 Escherichia coli APEC O78 14481885 YP_007381084.1 CDS APECO78_09545 NC_020163.1 1962706 1963407 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; lipoprotein transporter ATP-binding subunit 1962706..1963407 Escherichia coli APEC O78 14481886 YP_007381085.1 CDS APECO78_09550 NC_020163.1 1963407 1964651 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolE 1963407..1964651 Escherichia coli APEC O78 14481887 YP_007381086.1 CDS APECO78_09555 NC_020163.1 1964680 1965591 D COG1940 Transcriptional regulator/sugar kinase; N-acetyl-D-glucosamine kinase 1964680..1965591 Escherichia coli APEC O78 14481888 YP_007381087.1 CDS APECO78_09560 NC_020163.1 1965607 1966428 D COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 1965607..1966428 Escherichia coli APEC O78 14481889 YP_007381088.1 CDS APECO78_09565 NC_020163.1 1966567 1967355 R inner membrane protein complement(1966567..1967355) Escherichia coli APEC O78 14481890 YP_007381089.1 CDS APECO78_09570 NC_020163.1 1967352 1967813 R inner membrane protein complement(1967352..1967813) Escherichia coli APEC O78 14481891 YP_007381090.1 CDS APECO78_09575 NC_020163.1 1967871 1968917 R COG0687 Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine-binding periplasmic protein precursor complement(1967871..1968917) Escherichia coli APEC O78 14481892 YP_007381091.1 CDS APECO78_09580 NC_020163.1 1968914 1969708 R COG1177 ABC-type spermidine/putrescine transport system, permease component II; spermidine/putrescine ABC transporter permease complement(1968914..1969708) Escherichia coli APEC O78 14481893 YP_007381092.1 CDS potB NC_020163.1 1969705 1970562 R COG1176 ABC-type spermidine/putrescine transport system, permease component I; spermidine/putrescine ABC transporter membrane protein complement(1969705..1970562) Escherichia coli APEC O78 14481894 YP_007381093.1 CDS APECO78_09590 NC_020163.1 1970546 1971682 R COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine/spermidine ABC transporter ATPase complement(1970546..1971682) Escherichia coli APEC O78 14481895 YP_007381094.1 CDS APECO78_09595 NC_020163.1 1971932 1973158 D COG2195 Di- and tripeptidases; peptidase T 1971932..1973158 Escherichia coli APEC O78 14481896 YP_007381095.1 CDS APECO78_09600 NC_020163.1 1973207 1974328 R COG2850 Uncharacterized conserved protein; hypothetical protein complement(1973207..1974328) Escherichia coli APEC O78 14481897 YP_007381096.1 CDS APECO78_09605 NC_020163.1 1974404 1975864 R COG0642 Signal transduction histidine kinase; sensor protein PhoQ complement(1974404..1975864) Escherichia coli APEC O78 14481898 YP_007381097.1 CDS APECO78_09610 NC_020163.1 1975864 1976535 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator PhoP complement(1975864..1976535) Escherichia coli APEC O78 14481899 YP_007381098.1 CDS APECO78_09615 NC_020163.1 1976704 1978074 R COG0015 Adenylosuccinate lyase; adenylosuccinate lyase complement(1976704..1978074) Escherichia coli APEC O78 14481900 YP_007381099.1 CDS APECO78_09620 NC_020163.1 1978078 1978719 R COG2915 Uncharacterized protein involved in purine metabolism; hypothetical protein complement(1978078..1978719) Escherichia coli APEC O78 14481901 YP_007381100.1 CDS APECO78_09625 NC_020163.1 1978755 1979861 R COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; trmU complement(1978755..1979861) Escherichia coli APEC O78 14481902 YP_007381101.1 CDS APECO78_09630 NC_020163.1 1979915 1980376 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; putative phosphohydrolase complement(1979915..1980376) Escherichia coli APEC O78 14481903 YP_007381102.1 CDS APECO78_09635 NC_020163.1 1980386 1981039 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase E complement(1980386..1981039) Escherichia coli APEC O78 14481904 YP_007381103.1 CDS APECO78_09640 NC_020163.1 1981211 1982461 D COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 1981211..1982461 Escherichia coli APEC O78 14481905 YP_007381104.1 CDS APECO78_09645 NC_020163.1 1982564 1982887 R anti-adapter protein IraM complement(1982564..1982887) Escherichia coli APEC O78 14481906 YP_007381105.1 CDS APECO78_09650 NC_020163.1 1983583 1983987 R COG5562 Phage envelope protein; hypothetical protein complement(1983583..1983987) Escherichia coli APEC O78 14481907 YP_007381106.1 CDS APECO78_09655 NC_020163.1 1984208 1984939 R COG0789 Predicted transcriptional regulators; MerR family transcriptional regulator complement(1984208..1984939) Escherichia coli APEC O78 14481908 YP_007381107.1 CDS APECO78_09660 NC_020163.1 1985144 1986355 R COG2200 FOG: EAL domain; putative FAD-binding phosphodiesterase complement(1985144..1986355) Escherichia coli APEC O78 14481909 YP_007381108.1 CDS APECO78_09665 NC_020163.1 1986669 1986905 D hypothetical protein 1986669..1986905 Escherichia coli APEC O78 14481910 YP_007381109.1 CDS APECO78_09670 NC_020163.1 1986948 1987220 D hypothetical protein 1986948..1987220 Escherichia coli APEC O78 14481911 YP_007381110.1 CDS APECO78_09675 NC_020163.1 1987249 1987515 D hypothetical protein 1987249..1987515 Escherichia coli APEC O78 14481912 YP_007381111.1 CDS APECO78_09680 NC_020163.1 1987628 1987876 D hypothetical protein 1987628..1987876 Escherichia coli APEC O78 14481913 YP_007381112.1 CDS APECO78_09685 NC_020163.1 1988208 1989731 D COG2200 FOG: EAL domain; hypothetical protein 1988208..1989731 Escherichia coli APEC O78 14481914 YP_007381113.1 CDS APECO78_09690 NC_020163.1 1989863 1990081 D hypothetical protein 1989863..1990081 Escherichia coli APEC O78 14481915 YP_007381114.1 CDS APECO78_09695 NC_020163.1 1990481 1990690 D hypothetical protein 1990481..1990690 Escherichia coli APEC O78 14481916 YP_007381115.1 CDS APECO78_09700 NC_020163.1 1990807 1993128 D COG3468 Type V secretory pathway, adhesin AidA; putative outer membrane autotransporter barrel pectin lyase fold protein 1990807..1993128 Escherichia coli APEC O78 14481917 YP_007381116.1 CDS APECO78_09705 NC_020163.1 1993185 1993514 R hypothetical protein complement(1993185..1993514) Escherichia coli APEC O78 14481918 YP_007381117.1 CDS APECO78_09710 NC_020163.1 1993524 1993808 R hypothetical protein complement(1993524..1993808) Escherichia coli APEC O78 14481919 YP_007381118.1 CDS APECO78_09715 NC_020163.1 1994576 1994788 D adhesin 1994576..1994788 Escherichia coli APEC O78 14481920 YP_007381119.1 CDS APECO78_09720 NC_020163.1 1995160 1995426 R COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE complement(1995160..1995426) Escherichia coli APEC O78 14481921 YP_007381120.1 CDS APECO78_09725 NC_020163.1 1995430 1996242 R COG2894 Septum formation inhibitor-activating ATPase; cell division inhibitor MinD complement(1995430..1996242) Escherichia coli APEC O78 14481922 YP_007381121.1 CDS minC NC_020163.1 1996266 1996961 R COG0850 Septum formation inhibitor; septum formation inhibitor complement(1996266..1996961) Escherichia coli APEC O78 14481923 YP_007381122.1 CDS APECO78_09735 NC_020163.1 1997340 1997705 D COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 1997340..1997705 Escherichia coli APEC O78 14481924 YP_007381123.1 CDS APECO78_09740 NC_020163.1 1997663 1998568 D COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 1997663..1998568 Escherichia coli APEC O78 14481925 YP_007381124.1 CDS APECO78_09745 NC_020163.1 1998817 1999185 D hypothetical protein 1998817..1999185 Escherichia coli APEC O78 14481926 YP_007381125.1 CDS APECO78_09750 NC_020163.1 1999305 1999706 R hypothetical protein complement(1999305..1999706) Escherichia coli APEC O78 14481927 YP_007381126.1 CDS APECO78_09755 NC_020163.1 1999915 2000241 D COG3100 Uncharacterized protein conserved in bacteria; hypothetical protein 1999915..2000241 Escherichia coli APEC O78 14481928 YP_007381127.1 CDS APECO78_09760 NC_020163.1 2000313 2000972 D COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); hypothetical protein 2000313..2000972 Escherichia coli APEC O78 14481929 YP_007381128.1 CDS APECO78_09765 NC_020163.1 2001064 2001510 D COG2983 Uncharacterized conserved protein; hypothetical protein 2001064..2001510 Escherichia coli APEC O78 14481930 YP_007381129.1 CDS hlyE NC_020163.1 2001717 2001998 R hemolysin E complement(2001717..2001998) Escherichia coli APEC O78 14481931 YP_007381130.1 CDS APECO78_09775 NC_020163.1 2002118 2002627 R COG1511 Predicted membrane protein; hemolysin E complement(2002118..2002627) Escherichia coli APEC O78 14481932 YP_007381131.1 CDS APECO78_09780 NC_020163.1 2003000 2003419 D COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); DNA polymerase V subunit UmuD 2003000..2003419 Escherichia coli APEC O78 14481933 YP_007381132.1 CDS APECO78_09785 NC_020163.1 2003419 2004687 D COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC 2003419..2004687 Escherichia coli APEC O78 14481934 YP_007381133.1 CDS APECO78_09790 NC_020163.1 2004733 2005263 R COG1495 Disulfide bond formation protein DsbB; disulfide bond formation protein B complement(2004733..2005263) Escherichia coli APEC O78 14481935 YP_007381134.1 CDS APECO78_09795 NC_020163.1 2005409 2006950 R COG3067 Na+/H+ antiporter; sodium/proton antiporter complement(2005409..2006950) Escherichia coli APEC O78 14481936 YP_007381135.1 CDS APECO78_09800 NC_020163.1 2007171 2007890 D COG2186 Transcriptional regulators; Fatty acid metabolism regulator protein 2007171..2007890 Escherichia coli APEC O78 14481937 YP_007381136.1 CDS APECO78_09805 NC_020163.1 2007942 2009474 R COG2719 Uncharacterized conserved protein; SpoVR family protein complement(2007942..2009474) Escherichia coli APEC O78 14481938 YP_007381137.1 CDS APECO78_09810 NC_020163.1 2009804 2011102 D COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase small subunit 2009804..2011102 Escherichia coli APEC O78 14481939 YP_007381138.1 CDS dadX NC_020163.1 2011112 2012182 D COG0787 Alanine racemase; alanine racemase 2011112..2012182 Escherichia coli APEC O78 14481940 YP_007381139.1 CDS APECO78_09820 NC_020163.1 2012568 2014304 R COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain; potassium/proton antiporter complement(2012568..2014304) Escherichia coli APEC O78 14481941 YP_007381140.1 CDS ldcA NC_020163.1 2014399 2015313 R COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; L,D-carboxypeptidase A complement(2014399..2015313) Escherichia coli APEC O78 14481942 YP_007381141.1 CDS emtA NC_020163.1 2015413 2016024 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein endotransglycosylase E 2015413..2016024 Escherichia coli APEC O78 14481943 YP_007381142.1 CDS APECO78_09835 NC_020163.1 2016026 2016760 R COG5581 Predicted glycosyltransferase; YcgR protein complement(2016026..2016760) Escherichia coli APEC O78 14481944 YP_007381143.1 CDS APECO78_09840 NC_020163.1 2016961 2017215 D COG2261 Predicted membrane protein; inner membrane protein 2016961..2017215 Escherichia coli APEC O78 14481945 YP_007381144.1 CDS APECO78_09845 NC_020163.1 2017393 2017833 D hypothetical protein 2017393..2017833 Escherichia coli APEC O78 14481946 YP_007381145.1 CDS treA NC_020163.1 2017912 2019609 R COG1626 Neutral trehalase; trehalase complement(2017912..2019609) Escherichia coli APEC O78 14481947 YP_007381146.1 CDS APECO78_09855 NC_020163.1 2019929 2021347 R COG3412 Uncharacterized protein conserved in bacteria; dihydroxyacetone kinase subunit M complement(2019929..2021347) Escherichia coli APEC O78 14481948 YP_007381147.1 CDS APECO78_09860 NC_020163.1 2021358 2021990 R COG2376 Dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaL complement(2021358..2021990) Escherichia coli APEC O78 14481949 YP_007381148.1 CDS APECO78_09865 NC_020163.1 2022001 2023071 R COG2376 Dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK complement(2022001..2023071) Escherichia coli APEC O78 14481950 YP_007381149.1 CDS APECO78_09870 NC_020163.1 2023299 2025218 D COG3284 Transcriptional activator of acetoin/glycerol metabolism; DNA-binding transcriptional regulator DhaR 2023299..2025218 Escherichia coli APEC O78 14481951 YP_007381150.1 CDS APECO78_09885 NC_020163.1 2028548 2028751 D hypothetical protein 2028548..2028751 Escherichia coli APEC O78 14481952 YP_007381151.1 CDS APECO78_09890 NC_020163.1 2029044 2030135 R COG0012 Predicted GTPase, probable translation factor; GTP-binding protein YchF complement(2029044..2030135) Escherichia coli APEC O78 14481953 YP_007381152.1 CDS APECO78_09895 NC_020163.1 2030252 2030836 R COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase complement(2030252..2030836) Escherichia coli APEC O78 14481954 YP_007381153.1 CDS APECO78_09900 NC_020163.1 2031114 2031392 D hypothetical protein 2031114..2031392 Escherichia coli APEC O78 14481955 YP_007381154.1 CDS APECO78_09905 NC_020163.1 2031447 2033126 R COG0659 Sulfate permease and related transporters (MFS superfamily); transporter complement(2031447..2033126) Escherichia coli APEC O78 14481956 YP_007381155.1 CDS APECO78_09910 NC_020163.1 2033251 2034198 R COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase complement(2033251..2034198) Escherichia coli APEC O78 14481957 YP_007381156.1 CDS ipk NC_020163.1 2034349 2035200 R COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(2034349..2035200) Escherichia coli APEC O78 14481958 YP_007381157.1 CDS APECO78_09920 NC_020163.1 2035200 2035823 R COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis; outer membrane lipoprotein LolB complement(2035200..2035823) Escherichia coli APEC O78 14481959 YP_007381158.1 CDS hemA NC_020163.1 2036037 2037293 D COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase 2036037..2037293 Escherichia coli APEC O78 14481960 YP_007381159.1 CDS APECO78_09930 NC_020163.1 2037335 2038417 D COG0216 Protein chain release factor A; peptide chain release factor 1 2037335..2038417 Escherichia coli APEC O78 14481961 YP_007381160.1 CDS APECO78_09935 NC_020163.1 2038417 2039250 D COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2038417..2039250 Escherichia coli APEC O78 14481962 YP_007381161.1 CDS APECO78_09940 NC_020163.1 2039247 2039639 D COG3094 Uncharacterized protein conserved in bacteria; hypothetical protein 2039247..2039639 Escherichia coli APEC O78 14481963 YP_007381162.1 CDS APECO78_09945 NC_020163.1 2039643 2040452 D COG2912 Uncharacterized conserved protein; hypothetical protein 2039643..2040452 Escherichia coli APEC O78 14481964 YP_007381163.1 CDS APECO78_09950 NC_020163.1 2040488 2041342 D COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase 2040488..2041342 Escherichia coli APEC O78 14481965 YP_007381164.1 CDS APECO78_09955 NC_020163.1 2041490 2041597 R hypothetical protein complement(2041490..2041597) Escherichia coli APEC O78 14481966 YP_007381165.1 CDS APECO78_09960 NC_020163.1 2042026 2042133 R hypothetical protein complement(2042026..2042133) Escherichia coli APEC O78 14481967 YP_007381166.1 CDS APECO78_09965 NC_020163.1 2042538 2043638 R COG0387 Ca2+/H+ antiporter; calcium/sodium:proton antiporter complement(2042538..2043638) Escherichia coli APEC O78 14481968 YP_007381167.1 CDS chaB NC_020163.1 2043908 2044138 D COG4572 Putative cation transport regulator; cation transport regulator 2043908..2044138 Escherichia coli APEC O78 14481969 YP_007381168.1 CDS APECO78_09975 NC_020163.1 2044275 2044991 D COG3703 Uncharacterized protein involved in cation transport; regulatory protein for cation transport 2044275..2044991 Escherichia coli APEC O78 14481970 YP_007381169.1 CDS APECO78_09980 NC_020163.1 2045035 2045388 R COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; hypothetical protein complement(2045035..2045388) Escherichia coli APEC O78 14481971 YP_007381170.1 CDS APECO78_09985 NC_020163.1 2045714 2046967 D invasin 2045714..2046967 Escherichia coli APEC O78 14481972 YP_007381171.1 CDS APECO78_09990 NC_020163.1 2046968 2047618 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; fused DNA-binding response regulator NarL and sensory histidine kinase NarX in two-component regulatory system complement(2046968..2047618) Escherichia coli APEC O78 14481973 YP_007381172.1 CDS APECO78_09995 NC_020163.1 2047611 2049407 R COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarX complement(2047611..2049407) Escherichia coli APEC O78 14481974 YP_007381173.1 CDS APECO78_10000 NC_020163.1 2049746 2051137 D COG2223 Nitrate/nitrite transporter; nitrite extrusion protein 2049746..2051137 Escherichia coli APEC O78 14481975 YP_007381174.1 CDS APECO78_10005 NC_020163.1 2051530 2055273 D COG5013 Nitrate reductase alpha subunit; nitrate reductase subunit alpha 2051530..2055273 Escherichia coli APEC O78 14481976 YP_007381175.1 CDS narH NC_020163.1 2055270 2056808 D COG1140 Nitrate reductase beta subunit; nitrate reductase A subunit beta 2055270..2056808 Escherichia coli APEC O78 14481977 YP_007381176.1 CDS APECO78_10015 NC_020163.1 2056805 2057515 D COG2180 Nitrate reductase delta subunit; nitrate reductase molybdenum cofactor assembly chaperone NarJ 2056805..2057515 Escherichia coli APEC O78 14481978 YP_007381177.1 CDS APECO78_10020 NC_020163.1 2057515 2058192 D COG2181 Nitrate reductase gamma subunit; Respiratory nitrate reductase subunit gamma 2057515..2058192 Escherichia coli APEC O78 14481979 YP_007381178.1 CDS APECO78_10025 NC_020163.1 2058397 2058486 R protamine-like protein complement(2058397..2058486) Escherichia coli APEC O78 14481980 YP_007381179.1 CDS APECO78_10030 NC_020163.1 2058917 2059759 R COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate deformylase complement(2058917..2059759) Escherichia coli APEC O78 14484618 YP_007381180.1 CDS APECO78_10035 NC_020163.1 2059809 2060267 R COG3012 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2059809..2060267) Escherichia coli APEC O78 14481982 YP_007381181.1 CDS APECO78_10040 NC_020163.1 2060380 2061285 D COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; hypothetical protein 2060380..2061285 Escherichia coli APEC O78 14481983 YP_007381182.1 CDS APECO78_10045 NC_020163.1 2061377 2062390 D COG0784 FOG: CheY-like receiver; response regulator of RpoS 2061377..2062390 Escherichia coli APEC O78 14481984 YP_007381183.1 CDS APECO78_10050 NC_020163.1 2062592 2063500 D COG1210 UDP-glucose pyrophosphorylase; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 2062592..2063500 Escherichia coli APEC O78 14481985 YP_007381184.1 CDS APECO78_10055 NC_020163.1 2063644 2064057 R COG2916 DNA-binding protein H-NS; global DNA-binding transcriptional dual regulator H-NS complement(2063644..2064057) Escherichia coli APEC O78 14481986 YP_007381185.1 CDS APECO78_10060 NC_020163.1 2064661 2065278 D COG1435 Thymidine kinase; thymidine kinase 2064661..2065278 Escherichia coli APEC O78 14481987 YP_007381186.1 CDS APECO78_10065 NC_020163.1 2065580 2068255 R COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2065580..2068255) Escherichia coli APEC O78 14481988 YP_007381187.1 CDS APECO78_10070 NC_020163.1 2068732 2069379 D COG2095 Multiple antibiotic transporter; hypothetical protein 2068732..2069379 Escherichia coli APEC O78 14481989 YP_007381188.1 CDS APECO78_10075 NC_020163.1 2070117 2071748 D COG4166 ABC-type oligopeptide transport system, periplasmic component; oligopeptide ABC transporter substrate-binding protein OppA 2070117..2071748 Escherichia coli APEC O78 14481990 YP_007381189.1 CDS APECO78_10080 NC_020163.1 2071834 2072754 D COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide transporter permease 2071834..2072754 Escherichia coli APEC O78 14481991 YP_007381190.1 CDS APECO78_10085 NC_020163.1 2072769 2073677 D COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide ABC transporter permease OppC 2072769..2073677 Escherichia coli APEC O78 14481992 YP_007381191.1 CDS APECO78_10090 NC_020163.1 2073689 2074702 D COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein 2073689..2074702 Escherichia coli APEC O78 14481993 YP_007381192.1 CDS APECO78_10095 NC_020163.1 2074699 2075703 D COG4608 ABC-type oligopeptide transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein OppF 2074699..2075703 Escherichia coli APEC O78 14481994 YP_007381193.1 CDS APECO78_10100 NC_020163.1 2075756 2076085 R COG3099 Uncharacterized protein conserved in bacteria; dsDNA-mimic protein complement(2075756..2076085) Escherichia coli APEC O78 14481995 YP_007381194.1 CDS APECO78_10105 NC_020163.1 2076120 2077580 R COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthetase complement(2076120..2077580) Escherichia coli APEC O78 14481996 YP_007381195.1 CDS APECO78_10110 NC_020163.1 2077612 2077896 D hypothetical protein 2077612..2077896 Escherichia coli APEC O78 14481997 YP_007381196.1 CDS APECO78_10115 NC_020163.1 2077951 2079204 R COG1226 Kef-type K+ transport systems, predicted NAD-binding component; voltage-gated potassium channel complement(2077951..2079204) Escherichia coli APEC O78 14481998 YP_007381197.1 CDS APECO78_10120 NC_020163.1 2079504 2079800 R COG2350 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2079504..2079800) Escherichia coli APEC O78 14481999 YP_007381198.1 CDS APECO78_10125 NC_020163.1 2080024 2080743 D COG0810 Periplasmic protein TonB, links inner and outer membranes; transport protein TonB 2080024..2080743 Escherichia coli APEC O78 14482000 YP_007381199.1 CDS APECO78_10130 NC_020163.1 2080783 2081181 R COG1607 Acyl-CoA hydrolase; acyl-CoA esterase complement(2080783..2081181) Escherichia coli APEC O78 14482001 YP_007381200.1 CDS APECO78_10135 NC_020163.1 2081286 2081825 R COG2917 Intracellular septation protein A; intracellular septation protein A complement(2081286..2081825) Escherichia coli APEC O78 14482002 YP_007381201.1 CDS APECO78_10140 NC_020163.1 2081855 2082598 R hypothetical protein complement(2081855..2082598) Escherichia coli APEC O78 14482003 YP_007381202.1 CDS APECO78_10145 NC_020163.1 2082955 2083593 D COG3047 Outer membrane protein W; outer membrane protein W 2082955..2083593 Escherichia coli APEC O78 14482004 YP_007381203.1 CDS APECO78_10150 NC_020163.1 2083653 2084159 R COG3685 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2083653..2084159) Escherichia coli APEC O78 14482005 YP_007381204.1 CDS APECO78_10155 NC_020163.1 2084205 2084705 R COG3685 Uncharacterized protein conserved in bacteria; YciF protein complement(2084205..2084705) Escherichia coli APEC O78 14482006 YP_007381205.1 CDS APECO78_10160 NC_020163.1 2084791 2084970 R COG3729 General stress protein; hypothetical protein complement(2084791..2084970) Escherichia coli APEC O78 14482007 YP_007381206.1 CDS trpA NC_020163.1 2085351 2086157 R COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha complement(2085351..2086157) Escherichia coli APEC O78 14482008 YP_007381207.1 CDS APECO78_10170 NC_020163.1 2086157 2087350 R COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta complement(2086157..2087350) Escherichia coli APEC O78 14482009 YP_007381208.1 CDS APECO78_10175 NC_020163.1 2087362 2088720 R COG0134 Indole-3-glycerol phosphate synthase; fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl) anthranilate isomerase complement(2087362..2088720) Escherichia coli APEC O78 14482010 YP_007381209.1 CDS APECO78_10180 NC_020163.1 2088724 2090319 R COG0512 Anthranilate/para-aminobenzoate synthases component II; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase complement(2088724..2090319) Escherichia coli APEC O78 14482011 YP_007381210.1 CDS APECO78_10185 NC_020163.1 2090319 2091881 R COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I complement(2090319..2091881) Escherichia coli APEC O78 14482012 YP_007381211.1 CDS APECO78_10190 NC_020163.1 2092154 2093035 D COG0613 Predicted metal-dependent phosphoesterases (PHP family); hypothetical protein 2092154..2093035 Escherichia coli APEC O78 14482013 YP_007381212.1 CDS APECO78_10195 NC_020163.1 2093032 2093652 D COG0009 Putative translation factor (SUA5); hypothetical protein 2093032..2093652 Escherichia coli APEC O78 14482014 YP_007381213.1 CDS APECO78_10200 NC_020163.1 2093753 2094625 D COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridylate synthase B 2093753..2094625 Escherichia coli APEC O78 14482015 YP_007381214.1 CDS APECO78_10205 NC_020163.1 2094665 2095255 R COG2109 ATP:corrinoid adenosyltransferase; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase complement(2094665..2095255) Escherichia coli APEC O78 14482016 YP_007381215.1 CDS APECO78_10210 NC_020163.1 2095252 2096010 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxoacyl-(acyl carrier protein) reductase complement(2095252..2096010) Escherichia coli APEC O78 14482017 YP_007381216.1 CDS APECO78_10215 NC_020163.1 2096230 2097279 D COG0616 Periplasmic serine proteases (ClpP class); inner membrane peptidase 2096230..2097279 Escherichia coli APEC O78 14482018 YP_007381217.1 CDS APECO78_10220 NC_020163.1 2097315 2097566 R hypothetical protein complement(2097315..2097566) Escherichia coli APEC O78 14482019 YP_007381218.1 CDS APECO78_10225 NC_020163.1 2097946 2100543 D COG0550 Topoisomerase IA; DNA topoisomerase I subunit omega 2097946..2100543 Escherichia coli APEC O78 14482020 YP_007381219.1 CDS APECO78_10230 NC_020163.1 2100753 2101727 D COG0583 Transcriptional regulator; transcriptional regulator CysB 2100753..2101727 Escherichia coli APEC O78 14482021 YP_007381220.1 CDS APECO78_10235 NC_020163.1 2102058 2102186 D hypothetical protein 2102058..2102186 Escherichia coli APEC O78 14482022 YP_007381221.1 CDS APECO78_10240 NC_020163.1 2102189 2102356 D hypothetical protein 2102189..2102356 Escherichia coli APEC O78 14482023 YP_007381222.1 CDS APECO78_10245 NC_020163.1 2102430 2102555 R hypothetical protein complement(2102430..2102555) Escherichia coli APEC O78 14482024 YP_007381223.1 CDS APECO78_10250 NC_020163.1 2102729 2105404 D COG1048 Aconitase A; aconitate hydratase 2102729..2105404 Escherichia coli APEC O78 14482025 YP_007381224.1 CDS APECO78_10255 NC_020163.1 2105468 2106058 R COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II complement(2105468..2106058) Escherichia coli APEC O78 14482026 YP_007381225.1 CDS APECO78_10260 NC_020163.1 2106228 2106992 D COG0671 Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B 2106228..2106992 Escherichia coli APEC O78 14482027 YP_007381226.1 CDS APECO78_10265 NC_020163.1 2107141 2107449 D COG3771 Predicted membrane protein; hypothetical protein 2107141..2107449 Escherichia coli APEC O78 14482028 YP_007381227.1 CDS APECO78_10270 NC_020163.1 2107456 2108625 D COG2956 Predicted N-acetylglucosaminyl transferase; hypothetical protein 2107456..2108625 Escherichia coli APEC O78 14482029 YP_007381228.1 CDS APECO78_10275 NC_020163.1 2108818 2109555 D COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2108818..2109555 Escherichia coli APEC O78 14482030 YP_007381229.1 CDS APECO78_10280 NC_020163.1 2109555 2109881 D COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins; translation initiation factor Sui1 2109555..2109881 Escherichia coli APEC O78 14482031 YP_007381230.1 CDS APECO78_10285 NC_020163.1 2110007 2110225 R lipoprotein complement(2110007..2110225) Escherichia coli APEC O78 14482032 YP_007381231.1 CDS APECO78_10290 NC_020163.1 2110494 2111243 R COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptionel regulator complement(2110494..2111243) Escherichia coli APEC O78 14482033 YP_007381232.1 CDS APECO78_10295 NC_020163.1 2111333 2111506 R hypothetical protein complement(2111333..2111506) Escherichia coli APEC O78 14482034 YP_007381233.1 CDS APECO78_10300 NC_020163.1 2111653 2113638 R COG2199 FOG: GGDEF domain; RNase II stability modulator complement(2111653..2113638) Escherichia coli APEC O78 14482035 YP_007381234.1 CDS APECO78_10305 NC_020163.1 2113873 2115807 R COG4776 Exoribonuclease II; exoribonuclease II complement(2113873..2115807) Escherichia coli APEC O78 14482036 YP_007381235.1 CDS APECO78_10310 NC_020163.1 2115875 2117002 R COG2128 Uncharacterized conserved protein; oxidoreductase complement(2115875..2117002) Escherichia coli APEC O78 14482037 YP_007381236.1 CDS APECO78_10315 NC_020163.1 2117147 2117935 R COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-ACP reductase complement(2117147..2117935) Escherichia coli APEC O78 14482038 YP_007381237.1 CDS APECO78_10320 NC_020163.1 2118303 2118656 R COG2852 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2118303..2118656) Escherichia coli APEC O78 14482039 YP_007381238.1 CDS APECO78_10325 NC_020163.1 2118724 2119530 R COG4167 ABC-type antimicrobial peptide transport system, ATPase component; antimicrobial peptide ABC system ATP-binding protein SapF complement(2118724..2119530) Escherichia coli APEC O78 14482040 YP_007381239.1 CDS APECO78_10330 NC_020163.1 2119532 2120524 R COG4170 ABC-type antimicrobial peptide transport system, ATPase component; antimicrobial peptide ABC transporter ATP-binding protein complement(2119532..2120524) Escherichia coli APEC O78 14482041 YP_007381240.1 CDS APECO78_10335 NC_020163.1 2120524 2121414 R COG4171 ABC-type antimicrobial peptide transport system, permease component; antimicrobial peptide ABC transporter permease SapC complement(2120524..2121414) Escherichia coli APEC O78 14482042 YP_007381241.1 CDS APECO78_10340 NC_020163.1 2121401 2122366 R COG4168 ABC-type antimicrobial peptide transport system, permease component; antimicrobial peptide ABC transporter permease SapB complement(2121401..2122366) Escherichia coli APEC O78 14482043 YP_007381242.1 CDS APECO78_10345 NC_020163.1 2122363 2124006 R COG4166 ABC-type oligopeptide transport system, periplasmic component; antimicrobial peptide ABC transporter substrate-binding protein SapA complement(2122363..2124006) Escherichia coli APEC O78 14482044 YP_007381243.1 CDS APECO78_10350 NC_020163.1 2124319 2124564 R COG0480 Translation elongation factors (GTPases); hypothetical protein complement(2124319..2124564) Escherichia coli APEC O78 14482045 YP_007381244.1 CDS APECO78_10355 NC_020163.1 2124698 2126083 R COG0531 Amino acid transporters; putrescine importer PuuP complement(2124698..2126083) Escherichia coli APEC O78 14482046 YP_007381245.1 CDS APECO78_10360 NC_020163.1 2126386 2127804 R COG0174 Glutamine synthetase; glutamate--putrescine ligase complement(2126386..2127804) Escherichia coli APEC O78 14482047 YP_007381246.1 CDS puuD NC_020163.1 2128016 2128780 D COG2071 Predicted glutamine amidotransferases; gamma-glutamyl-gamma-aminobutyrate hydrolase 2128016..2128780 Escherichia coli APEC O78 14482048 YP_007381247.1 CDS APECO78_10370 NC_020163.1 2128807 2129364 D COG1396 Predicted transcriptional regulators; DNA-binding transcriptional repressor PuuR 2128807..2129364 Escherichia coli APEC O78 14482049 YP_007381248.1 CDS APECO78_10375 NC_020163.1 2129514 2131001 D COG1012 NAD-dependent aldehyde dehydrogenases; gamma-glutamyl-gamma- aminobutyraldehydedehydrogenase 2129514..2131001 Escherichia coli APEC O78 14482050 YP_007381249.1 CDS APECO78_10380 NC_020163.1 2131003 2132283 D COG0665 Glycine/D-amino acid oxidases (deaminating); gamma-glutamylputrescine oxidoreductase 2131003..2132283 Escherichia coli APEC O78 14482051 YP_007381250.1 CDS APECO78_10385 NC_020163.1 2132321 2133586 D COG0160 4-aminobutyrate aminotransferase and related aminotransferases; 4-aminobutyrate transaminase 2132321..2133586 Escherichia coli APEC O78 14482052 YP_007381251.1 CDS pspF NC_020163.1 2133717 2134694 R COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; phage shock protein operon transcriptional activator complement(2133717..2134694) Escherichia coli APEC O78 14482053 YP_007381252.1 CDS APECO78_10395 NC_020163.1 2134861 2135529 D COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; phage shock protein PspA 2134861..2135529 Escherichia coli APEC O78 14482054 YP_007381253.1 CDS APECO78_10400 NC_020163.1 2135583 2135807 D phage shock protein B 2135583..2135807 Escherichia coli APEC O78 14482055 YP_007381254.1 CDS APECO78_10405 NC_020163.1 2135807 2136166 D COG1983 Putative stress-responsive transcriptional regulator; DNA-binding transcriptional activator PspC 2135807..2136166 Escherichia coli APEC O78 14482056 YP_007381255.1 CDS APECO78_10410 NC_020163.1 2136175 2136396 D peripheral inner membrane phage-shock protein 2136175..2136396 Escherichia coli APEC O78 14482057 YP_007381256.1 CDS APECO78_10415 NC_020163.1 2136471 2136785 D COG0607 Rhodanese-related sulfurtransferase; thiosulfate:cyanide sulfurtransferase 2136471..2136785 Escherichia coli APEC O78 14482058 YP_007381257.1 CDS APECO78_10420 NC_020163.1 2136998 2138677 D COG0366 Glycosidases; putative glucosyltransferase 2136998..2138677 Escherichia coli APEC O78 14482059 YP_007381258.1 CDS APECO78_10425 NC_020163.1 2138691 2139983 D COG1653 ABC-type sugar transport system, periplasmic component; sugar transporter subunit 2138691..2139983 Escherichia coli APEC O78 14482060 YP_007381259.1 CDS APECO78_10430 NC_020163.1 2140004 2140885 D COG1175 ABC-type sugar transport systems, permease components; sugar transporter subunit 2140004..2140885 Escherichia coli APEC O78 14482061 YP_007381260.1 CDS APECO78_10435 NC_020163.1 2140872 2141714 D COG0395 ABC-type sugar transport system, permease component; sugar transporter subunit 2140872..2141714 Escherichia coli APEC O78 14482062 YP_007381261.1 CDS APECO78_10440 NC_020163.1 2141745 2142797 D COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase, Zn-dependent and NAD(P)-binding protein 2141745..2142797 Escherichia coli APEC O78 14482063 YP_007381262.1 CDS APECO78_10445 NC_020163.1 2142815 2143603 D COG1082 Sugar phosphate isomerases/epimerases; hypothetical protein 2142815..2143603 Escherichia coli APEC O78 14482064 YP_007381263.1 CDS APECO78_10450 NC_020163.1 2143613 2144668 D COG0673 Predicted dehydrogenases and related proteins; oxidoreductase, NADH-binding protein 2143613..2144668 Escherichia coli APEC O78 14482065 YP_007381264.1 CDS APECO78_10455 NC_020163.1 2144665 2146932 D COG1554 Trehalose and maltose hydrolases (possible phosphorylases); hydrolase 2144665..2146932 Escherichia coli APEC O78 14482066 YP_007381265.1 CDS APECO78_10460 NC_020163.1 2146929 2147588 D COG0637 Predicted phosphatase/phosphohexomutase; beta-phosphoglucomutase 2146929..2147588 Escherichia coli APEC O78 14482067 YP_007381266.1 CDS APECO78_10465 NC_020163.1 2147602 2148684 D COG3839 ABC-type sugar transport systems, ATPase components; sugar transporter subunit 2147602..2148684 Escherichia coli APEC O78 14482068 YP_007381267.1 CDS APECO78_10470 NC_020163.1 2148729 2149634 D outer membrane porin 2148729..2149634 Escherichia coli APEC O78 14482069 YP_007381268.1 CDS APECO78_10475 NC_020163.1 2149745 2150743 R COG1609 Transcriptional regulators; putative DNA-binding transcriptional regulator, LACI-type complement(2149745..2150743) Escherichia coli APEC O78 14482070 YP_007381269.1 CDS APECO78_10480 NC_020163.1 2150898 2152295 D COG3106 Predicted ATPase; hypothetical protein 2150898..2152295 Escherichia coli APEC O78 14482071 YP_007381270.1 CDS APECO78_10485 NC_020163.1 2152292 2153353 D COG3768 Predicted membrane protein; hypothetical protein 2152292..2153353 Escherichia coli APEC O78 14482072 YP_007381271.1 CDS APECO78_10490 NC_020163.1 2153501 2155042 D COG3283 Transcriptional regulator of aromatic amino acids metabolism; DNA-binding transcriptional regulator TyrR 2153501..2155042 Escherichia coli APEC O78 14482073 YP_007381272.1 CDS APECO78_10495 NC_020163.1 2155086 2155592 R COG2077 Peroxiredoxin; lipid hydroperoxide peroxidase complement(2155086..2155592) Escherichia coli APEC O78 14482074 YP_007381273.1 CDS APECO78_10500 NC_020163.1 2155711 2156676 D COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; L-Ala-D/L-Glu epimerase 2155711..2156676 Escherichia coli APEC O78 14482075 YP_007381274.1 CDS APECO78_10505 NC_020163.1 2156651 2157379 R COG2866 Predicted carboxypeptidase; murein peptide amidase A complement(2156651..2157379) Escherichia coli APEC O78 14482076 YP_007381275.1 CDS APECO78_10510 NC_020163.1 2157480 2157644 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein complement(2157480..2157644) Escherichia coli APEC O78 14482077 YP_007381276.1 CDS APECO78_10515 NC_020163.1 2157715 2158647 R COG1073 Hydrolases of the alpha/beta superfamily; hydrolase complement(2157715..2158647) Escherichia coli APEC O78 14482078 YP_007381277.1 CDS APECO78_10520 NC_020163.1 2158773 2159672 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 2158773..2159672 Escherichia coli APEC O78 14482079 YP_007381278.1 CDS APECO78_10525 NC_020163.1 2159761 2159886 D hypothetical protein 2159761..2159886 Escherichia coli APEC O78 14482080 YP_007381279.1 CDS APECO78_10530 NC_020163.1 2160009 2161622 D COG4166 ABC-type oligopeptide transport system, periplasmic component; Putative transport periplasmic protein 2160009..2161622 Escherichia coli APEC O78 14482081 YP_007381280.1 CDS APECO78_10535 NC_020163.1 2161673 2162704 R COG0668 Small-conductance mechanosensitive channel; hypothetical protein complement(2161673..2162704) Escherichia coli APEC O78 14482082 YP_007381281.1 CDS APECO78_10540 NC_020163.1 2162948 2163205 D hypothetical protein 2162948..2163205 Escherichia coli APEC O78 14482083 YP_007381282.1 CDS APECO78_10545 NC_020163.1 2163255 2164205 R COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspE complement(2163255..2164205) Escherichia coli APEC O78 14482084 YP_007381283.1 CDS APECO78_10550 NC_020163.1 2164357 2165109 R COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; fumarate/nitrate reduction transcriptional regulator complement(2164357..2165109) Escherichia coli APEC O78 14482085 YP_007381284.1 CDS APECO78_10555 NC_020163.1 2165304 2165819 R COG0350 Methylated DNA-protein cysteine methyltransferase; O-6-alkylguanine-DNA:cysteine-protein methyltransferase complement(2165304..2165819) Escherichia coli APEC O78 14482086 YP_007381285.1 CDS abgT NC_020163.1 2165830 2167356 R COG2978 Putative p-aminobenzoyl-glutamate transporter; aminobenzoyl-glutamate transporter complement(2165830..2167356) Escherichia coli APEC O78 14482087 YP_007381286.1 CDS APECO78_10565 NC_020163.1 2167393 2168838 R COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; peptidase, aminobenzoyl-glutamate utilization protein AbgB complement(2167393..2168838) Escherichia coli APEC O78 14482088 YP_007381287.1 CDS APECO78_10570 NC_020163.1 2168838 2170148 R COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; putative peptidase, aminobenzoyl-glutamate utilization protein AbgA complement(2168838..2170148) Escherichia coli APEC O78 14482089 YP_007381288.1 CDS APECO78_10575 NC_020163.1 2170324 2171232 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 2170324..2171232 Escherichia coli APEC O78 14482090 YP_007381289.1 CDS APECO78_10580 NC_020163.1 2171562 2172125 D COG2840 Uncharacterized protein conserved in bacteria; Smr domain-containing protein 2171562..2172125 Escherichia coli APEC O78 14482091 YP_007381290.1 CDS APECO78_10585 NC_020163.1 2172146 2173378 R COG2199 FOG: GGDEF domain; hypothetical protein complement(2172146..2173378) Escherichia coli APEC O78 14482092 YP_007381291.1 CDS APECO78_10590 NC_020163.1 2173633 2174616 D COG0598 Mg2+ and Co2+ transporters; Zn(II) transporter 2173633..2174616 Escherichia coli APEC O78 14482093 YP_007381292.1 CDS APECO78_10595 NC_020163.1 2174891 2175064 D hypothetical protein 2174891..2175064 Escherichia coli APEC O78 14482094 YP_007381293.1 CDS APECO78_10600 NC_020163.1 2175094 2176467 D COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DbpA 2175094..2176467 Escherichia coli APEC O78 14482095 YP_007381294.1 CDS APECO78_10605 NC_020163.1 2176596 2177531 R COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA 2-thiocytidine biosynthesis protein TtcA complement(2176596..2177531) Escherichia coli APEC O78 14482096 YP_007381295.1 CDS APECO78_10610 NC_020163.1 2177707 2178141 R COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein F complement(2177707..2178141) Escherichia coli APEC O78 14482097 YP_007381296.1 CDS APECO78_10615 NC_020163.1 2178282 2179415 R COG3203 Outer membrane protein (porin); outer membrane pore protein N, non-specific complement(2178282..2179415) Escherichia coli APEC O78 14482098 YP_007381297.1 CDS APECO78_10620 NC_020163.1 2179782 2183306 R COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; hypothetical protein complement(2179782..2183306) Escherichia coli APEC O78 14482099 YP_007381298.1 CDS APECO78_10625 NC_020163.1 2183580 2183846 D COG3042 Putative hemolysin; hypothetical protein 2183580..2183846 Escherichia coli APEC O78 14482100 YP_007381299.1 CDS APECO78_10630 NC_020163.1 2183843 2184265 R COG3187 Heat shock protein; heat-inducible protein complement(2183843..2184265) Escherichia coli APEC O78 14482101 YP_007381300.1 CDS APECO78_10635 NC_020163.1 2184376 2185365 R COG1052 Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase complement(2184376..2185365) Escherichia coli APEC O78 14482102 YP_007381301.1 CDS APECO78_10640 NC_020163.1 2185573 2188212 D hypothetical protein 2185573..2188212 Escherichia coli APEC O78 14482103 YP_007381302.1 CDS APECO78_10645 NC_020163.1 2188209 2188394 D putative lipoprotein 2188209..2188394 Escherichia coli APEC O78 14482104 YP_007381303.1 CDS APECO78_10650 NC_020163.1 2188402 2188728 D COG3784 Uncharacterized protein conserved in bacteria; hypothetical protein 2188402..2188728 Escherichia coli APEC O78 14482105 YP_007381304.1 CDS APECO78_10655 NC_020163.1 2188900 2189805 R COG2207 AraC-type DNA-binding domain-containing proteins; putative DNA-binding transcriptional dual regulator complement(2188900..2189805) Escherichia coli APEC O78 14482106 YP_007381305.1 CDS APECO78_10660 NC_020163.1 2190041 2191540 D COG1012 NAD-dependent aldehyde dehydrogenases; phenylacetaldehyde dehydrogenase 2190041..2191540 Escherichia coli APEC O78 14482107 YP_007381306.1 CDS tynA NC_020163.1 2191598 2193871 R COG3733 Cu2+-containing amine oxidase; tyramine oxidase complement(2191598..2193871) Escherichia coli APEC O78 14482108 YP_007381307.1 CDS APECO78_10670 NC_020163.1 2194119 2196164 R COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase complement(2194119..2196164) Escherichia coli APEC O78 14482109 YP_007381308.1 CDS paaA NC_020163.1 2196449 2197378 D COG3396 Uncharacterized conserved protein; phenylacetate-CoA oxygenase subunit PaaA 2196449..2197378 Escherichia coli APEC O78 14482110 YP_007381309.1 CDS paaB NC_020163.1 2197390 2197677 D COG3460 Uncharacterized enzyme of phenylacetate metabolism; phenylacetate-CoA oxygenase subunit PaaB 2197390..2197677 Escherichia coli APEC O78 14482111 YP_007381310.1 CDS APECO78_10685 NC_020163.1 2197686 2198432 D COG3396 Uncharacterized conserved protein; putative multicomponent oxygenase/reductase subunit 2197686..2198432 Escherichia coli APEC O78 14482112 YP_007381311.1 CDS APECO78_10690 NC_020163.1 2198447 2198944 D COG2151 Predicted metal-sulfur cluster biosynthetic enzyme; multicomponent oxygenase/reductase subunit 2198447..2198944 Escherichia coli APEC O78 14482113 YP_007381312.1 CDS APECO78_10695 NC_020163.1 2198952 2200022 D COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; subunit of the phenylacetly-CoA oxygenase/reductase 2198952..2200022 Escherichia coli APEC O78 14482114 YP_007381313.1 CDS APECO78_10700 NC_020163.1 2200019 2200786 D COG1024 Enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase-isomerase 2200019..2200786 Escherichia coli APEC O78 14482115 YP_007381314.1 CDS APECO78_10705 NC_020163.1 2200786 2201574 D COG1024 Enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase 2200786..2201574 Escherichia coli APEC O78 14482116 YP_007381315.1 CDS APECO78_10710 NC_020163.1 2201576 2203003 D COG1250 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxy-acyl-CoA dehydrogenase 2201576..2203003 Escherichia coli APEC O78 14482117 YP_007381316.1 CDS APECO78_10715 NC_020163.1 2202993 2203415 D COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; thioesterase 2202993..2203415 Escherichia coli APEC O78 14482118 YP_007381317.1 CDS APECO78_10720 NC_020163.1 2203415 2204620 D COG0183 Acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase 2203415..2204620 Escherichia coli APEC O78 14482119 YP_007381318.1 CDS APECO78_10725 NC_020163.1 2204647 2205960 D COG1541 Coenzyme F390 synthetase; phenylacetate-CoA ligase 2204647..2205960 Escherichia coli APEC O78 14482120 YP_007381319.1 CDS APECO78_10730 NC_020163.1 2206061 2207011 D COG3327 Phenylacetic acid-responsive transcriptional repressor; DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive 2206061..2207011 Escherichia coli APEC O78 14482121 YP_007381320.1 CDS APECO78_10735 NC_020163.1 2206993 2207583 D COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; putative hexapeptide repeat acetyltransferase 2206993..2207583 Escherichia coli APEC O78 14482122 YP_007381321.1 CDS APECO78_10740 NC_020163.1 2207815 2208675 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); oxidoreductase 2207815..2208675 Escherichia coli APEC O78 14482123 YP_007381322.1 CDS APECO78_10745 NC_020163.1 2208739 2211045 D hypothetical protein 2208739..2211045 Escherichia coli APEC O78 14482124 YP_007381323.1 CDS APECO78_10750 NC_020163.1 2211216 2211821 D COG0558 Phosphatidylglycerophosphate synthase; putative inner membrane protein 2211216..2211821 Escherichia coli APEC O78 14482125 YP_007381324.1 CDS APECO78_10755 NC_020163.1 2211821 2212717 D COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase; putative CDP-diglyceride synthase 2211821..2212717 Escherichia coli APEC O78 14482126 YP_007381325.1 CDS APECO78_10760 NC_020163.1 2212733 2214490 D COG2267 Lysophospholipase; hydrolase 2212733..2214490 Escherichia coli APEC O78 14482127 YP_007381326.1 CDS APECO78_10765 NC_020163.1 2214480 2215166 D COG0671 Membrane-associated phospholipid phosphatase; Putative enzyme YnbD 2214480..2215166 Escherichia coli APEC O78 14482128 YP_007381327.1 CDS APECO78_10770 NC_020163.1 2215194 2215796 D COG0671 Membrane-associated phospholipid phosphatase; phosphatase, inner membrane protein 2215194..2215796 Escherichia coli APEC O78 14482129 YP_007381328.1 CDS APECO78_10775 NC_020163.1 2215847 2216452 R COG1182 Acyl carrier protein phosphodiesterase; azoreductase complement(2215847..2216452) Escherichia coli APEC O78 14482130 YP_007381329.1 CDS APECO78_10780 NC_020163.1 2216710 2220555 D COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpA 2216710..2220555 Escherichia coli APEC O78 14482131 YP_007381330.1 CDS APECO78_10785 NC_020163.1 2220827 2221627 D COG1434 Uncharacterized conserved protein; hypothetical protein 2220827..2221627 Escherichia coli APEC O78 14482132 YP_007381331.1 CDS APECO78_10790 NC_020163.1 2221824 2223263 D COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase A 2221824..2223263 Escherichia coli APEC O78 14482133 YP_007381332.1 CDS APECO78_10795 NC_020163.1 2223305 2224306 R COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(2223305..2224306) Escherichia coli APEC O78 14482134 YP_007381333.1 CDS APECO78_10800 NC_020163.1 2224495 2225025 D COG3038 Cytochrome B561; cytochrome b561 2224495..2225025 Escherichia coli APEC O78 14482135 YP_007381334.1 CDS APECO78_10805 NC_020163.1 2225270 2225443 D hypothetical protein 2225270..2225443 Escherichia coli APEC O78 14482136 YP_007381335.1 CDS APECO78_10810 NC_020163.1 2225515 2225664 R small toxic polypeptide complement(2225515..2225664) Escherichia coli APEC O78 14482137 YP_007381336.1 CDS APECO78_10815 NC_020163.1 2226063 2227703 D COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor 2226063..2227703 Escherichia coli APEC O78 14482138 YP_007381337.1 CDS APECO78_10820 NC_020163.1 2227741 2228664 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2227741..2228664) Escherichia coli APEC O78 14482139 YP_007381338.1 CDS APECO78_10825 NC_020163.1 2228881 2230224 D COG5383 Uncharacterized protein conserved in bacteria; hypothetical protein 2228881..2230224 Escherichia coli APEC O78 14482140 YP_007381339.1 CDS mdoD NC_020163.1 2230449 2232104 D COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein D 2230449..2232104 Escherichia coli APEC O78 14482141 YP_007381340.1 CDS APECO78_10835 NC_020163.1 2232025 2232228 R hypothetical protein complement(2232025..2232228) Escherichia coli APEC O78 14482142 YP_007381341.1 CDS APECO78_10840 NC_020163.1 2232244 2232468 D COG2841 Uncharacterized protein conserved in bacteria; hypothetical protein 2232244..2232468 Escherichia coli APEC O78 14482143 YP_007381342.1 CDS APECO78_10845 NC_020163.1 2232531 2233067 D COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-L7/L12-serine acetyltransferase 2232531..2233067 Escherichia coli APEC O78 14482144 YP_007381343.1 CDS APECO78_10850 NC_020163.1 2233062 2234042 R COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); enzyme complement(2233062..2234042) Escherichia coli APEC O78 14482145 YP_007381344.1 CDS APECO78_10855 NC_020163.1 2234166 2235158 D COG1275 Tellurite resistance protein and related permeases; potassium-tellurite ethidium and proflavin transporter 2234166..2235158 Escherichia coli APEC O78 14482146 YP_007381345.1 CDS APECO78_10860 NC_020163.1 2235155 2235748 D COG0500 SAM-dependent methyltransferases; tellurite resistance protein TehB 2235155..2235748 Escherichia coli APEC O78 14482147 YP_007381346.1 CDS APECO78_10865 NC_020163.1 2236051 2236719 D hypothetical protein 2236051..2236719 Escherichia coli APEC O78 14482148 YP_007381347.1 CDS APECO78_10870 NC_020163.1 2236737 2236904 R COG1943 Transposase and inactivated derivatives; Transposase, IS605 family protein complement(2236737..2236904) Escherichia coli APEC O78 14482149 YP_007381348.1 CDS APECO78_10875 NC_020163.1 2237250 2238458 D COG0675 Transposase and inactivated derivatives; putative transposase IS605 family protein 2237250..2238458 Escherichia coli APEC O78 14482150 YP_007381349.1 CDS APECO78_10880 NC_020163.1 2238498 2239673 R COG3135 Uncharacterized protein involved in benzoate metabolism; putative benzoate transporter complement(2238498..2239673) Escherichia coli APEC O78 14482151 YP_007381350.1 CDS APECO78_10885 NC_020163.1 2239765 2240301 D COG1396 Predicted transcriptional regulators; DNA-binding transcriptional regulator 2239765..2240301 Escherichia coli APEC O78 14482152 YP_007381351.1 CDS APECO78_10890 NC_020163.1 2240374 2242335 D COG0826 Collagenase and related proteases; putative collagenase 2240374..2242335 Escherichia coli APEC O78 14482153 YP_007381352.1 CDS APECO78_10895 NC_020163.1 2242427 2242657 R hypothetical protein complement(2242427..2242657) Escherichia coli APEC O78 14482154 YP_007381353.1 CDS APECO78_10900 NC_020163.1 2243058 2243495 D COG1598 Uncharacterized conserved protein; DNA-binding transcriptional regulator 2243058..2243495 Escherichia coli APEC O78 14482155 YP_007381354.1 CDS APECO78_10905 NC_020163.1 2243574 2244980 D COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; DNA-binding transcriptional regulator 2243574..2244980 Escherichia coli APEC O78 14482156 YP_007381355.1 CDS APECO78_10910 NC_020163.1 2245225 2245557 D COG0687 Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine ABC transporter substrate-binding protein 2245225..2245557 Escherichia coli APEC O78 14482157 YP_007381356.1 CDS APECO78_10915 NC_020163.1 2245532 2246371 D COG0687 Spermidine/putrescine-binding periplasmic protein; putative spermidine/putrescine transporter subunit 2245532..2246371 Escherichia coli APEC O78 14482158 YP_007381357.1 CDS APECO78_10920 NC_020163.1 2246389 2247402 D COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putative spermidine/putrescine transporter subunit 2246389..2247402 Escherichia coli APEC O78 14482159 YP_007381358.1 CDS APECO78_10925 NC_020163.1 2247403 2248344 D COG1176 ABC-type spermidine/putrescine transport system, permease component I; ABC transporter permease 2247403..2248344 Escherichia coli APEC O78 14482160 YP_007381359.1 CDS APECO78_10930 NC_020163.1 2248334 2249128 D COG1177 ABC-type spermidine/putrescine transport system, permease component II; ABC transporter permease 2248334..2249128 Escherichia coli APEC O78 14482161 YP_007381360.1 CDS APECO78_10935 NC_020163.1 2249150 2250574 D COG1012 NAD-dependent aldehyde dehydrogenases; gamma-aminobutyraldehyde dehydrogenase 2249150..2250574 Escherichia coli APEC O78 14482162 YP_007381361.1 CDS APECO78_10940 NC_020163.1 2250961 2251134 D hypothetical protein 2250961..2251134 Escherichia coli APEC O78 14482163 YP_007381362.1 CDS APECO78_10945 NC_020163.1 2251220 2251453 D hypothetical protein 2251220..2251453 Escherichia coli APEC O78 14482164 YP_007381363.1 CDS APECO78_10950 NC_020163.1 2251454 2251903 R COG3238 Uncharacterized protein conserved in bacteria; inner membrane protein complement(2251454..2251903) Escherichia coli APEC O78 14482165 YP_007381364.1 CDS APECO78_10955 NC_020163.1 2251900 2252418 R COG1247 Sortase and related acyltransferases; N-acetyltransferase GCN5 complement(2251900..2252418) Escherichia coli APEC O78 14482166 YP_007381365.1 CDS APECO78_10960 NC_020163.1 2252599 2253636 D COG2130 Putative NADP-dependent oxidoreductases; putative oxidoreductase 2252599..2253636 Escherichia coli APEC O78 14482167 YP_007381366.1 CDS APECO78_10965 NC_020163.1 2253834 2254499 D COG1802 Transcriptional regulators; colanic acid/biofilm transcriptional regulator 2253834..2254499 Escherichia coli APEC O78 14482168 YP_007381367.1 CDS APECO78_10970 NC_020163.1 2254535 2256637 R COG1629 Outer membrane receptor proteins, mostly Fe transport; putative iron outer membrane receptor complement(2254535..2256637) Escherichia coli APEC O78 14482169 YP_007381368.1 CDS APECO78_10975 NC_020163.1 2256879 2257940 D COG3391 Uncharacterized conserved protein; hypothetical protein 2256879..2257940 Escherichia coli APEC O78 14482170 YP_007381369.1 CDS APECO78_10980 NC_020163.1 2258055 2259554 R COG1113 Gamma-aminobutyrate permease and related permeases; L-asparagine permease complement(2258055..2259554) Escherichia coli APEC O78 14482171 YP_007381370.1 CDS APECO78_10985 NC_020163.1 2259821 2260438 D COG0625 Glutathione S-transferase; enzyme 2259821..2260438 Escherichia coli APEC O78 14482172 YP_007381371.1 CDS APECO78_10990 NC_020163.1 2260514 2260726 D hypothetical protein 2260514..2260726 Escherichia coli APEC O78 14482173 YP_007381372.1 CDS APECO78_10995 NC_020163.1 2261547 2263655 D COG3501 Uncharacterized protein conserved in bacteria; ImpA family type VI secretion-associated protein 2261547..2263655 Escherichia coli APEC O78 14482174 YP_007381373.1 CDS APECO78_11000 NC_020163.1 2263723 2267943 D COG3209 Rhs family protein; RhsE core protein 2263723..2267943 Escherichia coli APEC O78 14482175 YP_007381374.1 CDS APECO78_11005 NC_020163.1 2267944 2268342 D hypothetical protein 2267944..2268342 Escherichia coli APEC O78 14482176 YP_007381375.1 CDS APECO78_11010 NC_020163.1 2268987 2269127 D hypothetical protein 2268987..2269127 Escherichia coli APEC O78 14482177 YP_007381376.1 CDS APECO78_11015 NC_020163.1 2269124 2269330 D hypothetical protein 2269124..2269330 Escherichia coli APEC O78 14482178 YP_007381377.1 CDS APECO78_11020 NC_020163.1 2269734 2270525 D COG5433 Transposase; transposase IS4 family protein 2269734..2270525 Escherichia coli APEC O78 14482179 YP_007381378.1 CDS APECO78_11025 NC_020163.1 2270558 2270785 D COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog; 4-oxalocrotonate tautomerase 2270558..2270785 Escherichia coli APEC O78 14482180 YP_007381379.1 CDS APECO78_11030 NC_020163.1 2270789 2271358 R COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; hypothetical protein complement(2270789..2271358) Escherichia coli APEC O78 14482181 YP_007381380.1 CDS APECO78_11035 NC_020163.1 2271531 2272376 D COG2162 Arylamine N-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 2271531..2272376 Escherichia coli APEC O78 14482182 YP_007381381.1 CDS APECO78_11040 NC_020163.1 2272472 2273365 R COG0384 Predicted epimerase, PhzC/PhzF homolog; hypothetical protein complement(2272472..2273365) Escherichia coli APEC O78 14482183 YP_007381382.1 CDS APECO78_11045 NC_020163.1 2273444 2274124 R COG2181 Nitrate reductase gamma subunit; cryptic nitrate reductase 2 subunit gamma complement(2273444..2274124) Escherichia coli APEC O78 14482184 YP_007381383.1 CDS APECO78_11050 NC_020163.1 2274121 2274816 R COG2180 Nitrate reductase delta subunit; nitrate reductase complement(2274121..2274816) Escherichia coli APEC O78 14482185 YP_007381384.1 CDS narY NC_020163.1 2274816 2276360 R COG1140 Nitrate reductase beta subunit; nitrate reductase Z subunit beta complement(2274816..2276360) Escherichia coli APEC O78 14482186 YP_007381385.1 CDS APECO78_11060 NC_020163.1 2276357 2280097 R COG5013 Nitrate reductase alpha subunit; nitrate reductase 2 (NRZ), alpha subunit complement(2276357..2280097) Escherichia coli APEC O78 14482187 YP_007381386.1 CDS APECO78_11065 NC_020163.1 2280179 2281567 R COG2223 Nitrate/nitrite transporter; nitrate/nitrite transport protein NarU complement(2280179..2281567) Escherichia coli APEC O78 14482188 YP_007381387.1 CDS APECO78_11070 NC_020163.1 2281891 2282226 R putative T3SS effector-like protein complement(2281891..2282226) Escherichia coli APEC O78 14482189 YP_007381388.1 CDS APECO78_11075 NC_020163.1 2282265 2283221 R COG4886 Leucine-rich repeat (LRR) protein; putative LRR repeat protein complement(2282265..2283221) Escherichia coli APEC O78 14482190 YP_007381389.1 CDS APECO78_11080 NC_020163.1 2283245 2283535 R COG3203 Outer membrane protein (porin); lipoprotein complement(2283245..2283535) Escherichia coli APEC O78 14482191 YP_007381390.1 CDS APECO78_11085 NC_020163.1 2283794 2284675 R COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; aromatic amino acid exporter complement(2283794..2284675) Escherichia coli APEC O78 14482192 YP_007381391.1 CDS APECO78_11090 NC_020163.1 2284907 2285494 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-N subunit alpha 2284907..2285494 Escherichia coli APEC O78 14482193 YP_007381392.1 CDS APECO78_11095 NC_020163.1 2285543 2287954 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase, nitrate-inducible, major subunit 2285543..2287954 Escherichia coli APEC O78 14482194 YP_007381393.1 CDS APECO78_11100 NC_020163.1 2287967 2288851 D COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-N subunit beta 2287967..2288851 Escherichia coli APEC O78 14482195 YP_007381394.1 CDS APECO78_11105 NC_020163.1 2288844 2289497 D COG2864 Cytochrome b subunit of formate dehydrogenase; Formate dehydrogenase-N gamma subunit 2288844..2289497 Escherichia coli APEC O78 14482196 YP_007381395.1 CDS APECO78_11110 NC_020163.1 2289904 2290188 R COG3093 Plasmid maintenance system antidote protein; DNA-binding transcriptional regulator complement(2289904..2290188) Escherichia coli APEC O78 14482197 YP_007381396.1 CDS APECO78_11115 NC_020163.1 2290334 2291344 R COG1064 Zn-dependent alcohol dehydrogenases; ethanol-active dehydrogenase/acetaldehyde-active reductase complement(2290334..2291344) Escherichia coli APEC O78 14482198 YP_007381397.1 CDS APECO78_11120 NC_020163.1 2291478 2293175 R COG0281 Malic enzyme; malate dehydrogenase complement(2291478..2293175) Escherichia coli APEC O78 14482199 YP_007381398.1 CDS APECO78_11125 NC_020163.1 2293332 2293469 R 30S ribosomal subunit S22 complement(2293332..2293469) Escherichia coli APEC O78 14482200 YP_007381399.1 CDS APECO78_11130 NC_020163.1 2293571 2293786 R biofilm-dependent modulation protein complement(2293571..2293786) Escherichia coli APEC O78 14482201 YP_007381400.1 CDS APECO78_11135 NC_020163.1 2294131 2294562 D COG1764 Predicted redox protein, regulator of disulfide bond formation; osmotically inducible, stress-inducible membrane protein OsmC 2294131..2294562 Escherichia coli APEC O78 14482202 YP_007381401.1 CDS APECO78_11140 NC_020163.1 2294618 2295544 R COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; D-ala-D-ala transporter subunit complement(2294618..2295544) Escherichia coli APEC O78 14482203 YP_007381402.1 CDS APECO78_11145 NC_020163.1 2295537 2296523 R COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; D-ala-D-ala transporter subunit complement(2295537..2296523) Escherichia coli APEC O78 14482204 YP_007381403.1 CDS APECO78_11150 NC_020163.1 2296520 2297416 R COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; ATP-dependent peptide transporter membrane subunit complement(2296520..2297416) Escherichia coli APEC O78 14482205 YP_007381404.1 CDS APECO78_11155 NC_020163.1 2297413 2298435 R COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; binding-protein-dependent transport system inner membrane protein complement(2297413..2298435) Escherichia coli APEC O78 14482206 YP_007381405.1 CDS APECO78_11160 NC_020163.1 2298437 2299987 R COG0747 ABC-type dipeptide transport system, periplasmic component; extracellular solute-binding protein complement(2298437..2299987) Escherichia coli APEC O78 14482207 YP_007381406.1 CDS APECO78_11165 NC_020163.1 2300001 2300582 R COG2173 D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase complement(2300001..2300582) Escherichia coli APEC O78 14482208 YP_007381407.1 CDS APECO78_11170 NC_020163.1 2300840 2303239 R COG2202 FOG: PAS/PAC domain; cyclic-di-GMP phosphodiesterase complement(2300840..2303239) Escherichia coli APEC O78 14482209 YP_007381408.1 CDS APECO78_11175 NC_020163.1 2303264 2304646 R COG2199 FOG: GGDEF domain; diguanylate cyclase complement(2303264..2304646) Escherichia coli APEC O78 14482210 YP_007381409.1 CDS APECO78_11180 NC_020163.1 2305023 2306342 R COG1649 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2305023..2306342) Escherichia coli APEC O78 14482211 YP_007381410.1 CDS APECO78_11185 NC_020163.1 2306473 2308008 R COG0531 Amino acid transporters; glutamate/gamma-aminobutyrate antiporter complement(2306473..2308008) Escherichia coli APEC O78 14482212 YP_007381411.1 CDS APECO78_11190 NC_020163.1 2308164 2309564 R COG0076 Glutamate decarboxylase and related PLP-dependent proteins; glutamate decarboxylase complement(2308164..2309564) Escherichia coli APEC O78 14482213 YP_007381412.1 CDS APECO78_11195 NC_020163.1 2309926 2312721 R COG0612 Predicted Zn-dependent peptidases; putative peptidase complement(2309926..2312721) Escherichia coli APEC O78 14482214 YP_007381413.1 CDS APECO78_11200 NC_020163.1 2312766 2315138 R COG1629 Outer membrane receptor proteins, mostly Fe transport; hypothetical protein complement(2312766..2315138) Escherichia coli APEC O78 14482215 YP_007381414.1 CDS APECO78_11205 NC_020163.1 2315176 2316861 R COG4178 ABC-type uncharacterized transport system, permease and ATPase components; putative ABC transporter ATP-binding protein complement(2315176..2316861) Escherichia coli APEC O78 14482216 YP_007381415.1 CDS APECO78_11210 NC_020163.1 2317152 2318189 R COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); putative arylsulfatase-activating protein complement(2317152..2318189) Escherichia coli APEC O78 14482217 YP_007381416.1 CDS APECO78_11215 NC_020163.1 2318174 2319079 R COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB complement(2318174..2319079) Escherichia coli APEC O78 14482218 YP_007381417.1 CDS APECO78_11220 NC_020163.1 2319037 2319402 R COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA complement(2319037..2319402) Escherichia coli APEC O78 14482219 YP_007381418.1 CDS APECO78_11225 NC_020163.1 2319697 2321379 R COG3119 Arylsulfatase A and related enzymes; hypothetical protein complement(2319697..2321379) Escherichia coli APEC O78 14482220 YP_007381419.1 CDS APECO78_11230 NC_020163.1 2321781 2322542 R COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator YdeO complement(2321781..2322542) Escherichia coli APEC O78 14482221 YP_007381420.1 CDS APECO78_11235 NC_020163.1 2322617 2322814 R hypothetical protein complement(2322617..2322814) Escherichia coli APEC O78 14482222 YP_007381421.1 CDS APECO78_11240 NC_020163.1 2323062 2325005 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative oxidoreductase complement(2323062..2325005) Escherichia coli APEC O78 14482223 YP_007381422.1 CDS APECO78_11245 NC_020163.1 2325117 2325341 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; oxidoreductase complement(2325117..2325341) Escherichia coli APEC O78 14482224 YP_007381423.1 CDS APECO78_11250 NC_020163.1 2325675 2326589 R putative fimbrial-like exported adhesin protein complement(2325675..2326589) Escherichia coli APEC O78 14482225 YP_007381424.1 CDS APECO78_11255 NC_020163.1 2326649 2327152 R COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like adhesin exported protein complement(2326649..2327152) Escherichia coli APEC O78 14482226 YP_007381425.1 CDS APECO78_11260 NC_020163.1 2327165 2327695 R COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like adhesin exported protein complement(2327165..2327695) Escherichia coli APEC O78 14482227 YP_007381426.1 CDS APECO78_11265 NC_020163.1 2327709 2330360 R COG3188 P pilus assembly protein, porin PapC; putative fimbrial usher protein complement(2327709..2330360) Escherichia coli APEC O78 14482228 YP_007381427.1 CDS APECO78_11270 NC_020163.1 2330402 2331112 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein complement(2330402..2331112) Escherichia coli APEC O78 14482229 YP_007381428.1 CDS APECO78_11275 NC_020163.1 2331473 2332036 R COG3539 P pilus assembly protein, pilin FimA; putative type 1 fimbrial protein complement(2331473..2332036) Escherichia coli APEC O78 14482230 YP_007381429.1 CDS APECO78_11280 NC_020163.1 2332491 2332670 R COG2207 AraC-type DNA-binding domain-containing proteins; yneL complement(2332491..2332670) Escherichia coli APEC O78 14482231 YP_007381430.1 CDS APECO78_11285 NC_020163.1 2332988 2334310 R COG3550 Uncharacterized protein related to capsule biosynthesis enzymes; regulator with hipB complement(2332988..2334310) Escherichia coli APEC O78 14482232 YP_007381431.1 CDS APECO78_11290 NC_020163.1 2334310 2334576 R COG1396 Predicted transcriptional regulators; antitoxin HipB complement(2334310..2334576) Escherichia coli APEC O78 14482233 YP_007381432.1 CDS APECO78_11295 NC_020163.1 2334785 2340205 R COG5295 Autotransporter adhesin; lipoprotein/autotransporter domain-containing protein complement(2334785..2340205) Escherichia coli APEC O78 14482234 YP_007381433.1 CDS APECO78_11300 NC_020163.1 2340736 2342328 R COG1070 Sugar (pentulose and hexulose) kinases; autoinducer-2 (AI-2) kinase complement(2340736..2342328) Escherichia coli APEC O78 14482235 YP_007381434.1 CDS APECO78_11305 NC_020163.1 2342407 2343360 R COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; transcriptional regulator LsrR complement(2342407..2343360) Escherichia coli APEC O78 14482236 YP_007381435.1 CDS APECO78_11310 NC_020163.1 2343609 2345144 D COG1129 ABC-type sugar transport system, ATPase component; autoinducer 2 ABC transporter ATP-binding protein LsrA 2343609..2345144 Escherichia coli APEC O78 14482237 YP_007381436.1 CDS APECO78_11315 NC_020163.1 2345138 2346166 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; autoinducer 2 ABC transporter permease LsrC 2345138..2346166 Escherichia coli APEC O78 14482238 YP_007381437.1 CDS APECO78_11320 NC_020163.1 2346166 2347158 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; autoinducer 2 import system permease LsrD 2346166..2347158 Escherichia coli APEC O78 14482239 YP_007381438.1 CDS APECO78_11325 NC_020163.1 2347170 2348192 D COG1879 ABC-type sugar transport system, periplasmic component; autoinducer 2-binding protein lsrB 2347170..2348192 Escherichia coli APEC O78 14482240 YP_007381439.1 CDS APECO78_11330 NC_020163.1 2348219 2349094 D COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; autoinducer 2 aldolase 2348219..2349094 Escherichia coli APEC O78 14482241 YP_007381440.1 CDS APECO78_11335 NC_020163.1 2349118 2349408 D COG1359 Uncharacterized conserved protein; autoinducer-2 (AI-2) modifying protein LsrG 2349118..2349408 Escherichia coli APEC O78 14482242 YP_007381441.1 CDS APECO78_11340 NC_020163.1 2349465 2350223 D COG4106 Trans-aconitate methyltransferase; trans-aconitate 2-methyltransferase 2349465..2350223 Escherichia coli APEC O78 14482243 YP_007381442.1 CDS APECO78_11345 NC_020163.1 2350227 2351141 R COG3781 Predicted membrane protein; hypothetical protein complement(2350227..2351141) Escherichia coli APEC O78 14482244 YP_007381443.1 CDS APECO78_11350 NC_020163.1 2351348 2352799 R COG0246 Mannitol-1-phosphate/altronate dehydrogenases; altronate oxidoreductase complement(2351348..2352799) Escherichia coli APEC O78 14482245 YP_007381444.1 CDS APECO78_11355 NC_020163.1 2353026 2353973 R COG2199 FOG: GGDEF domain; hypothetical protein complement(2353026..2353973) Escherichia coli APEC O78 14482246 YP_007381445.1 CDS APECO78_11360 NC_020163.1 2354294 2354443 R hypothetical protein complement(2354294..2354443) Escherichia coli APEC O78 14482247 YP_007381446.1 CDS APECO78_11365 NC_020163.1 2354582 2354941 R hypothetical protein complement(2354582..2354941) Escherichia coli APEC O78 14482248 YP_007381447.1 CDS APECO78_11370 NC_020163.1 2354941 2355867 R COG2066 Glutaminase; glutaminase complement(2354941..2355867) Escherichia coli APEC O78 14482249 YP_007381448.1 CDS APECO78_11375 NC_020163.1 2355931 2357319 R COG1012 NAD-dependent aldehyde dehydrogenases; succinate semialdehyde dehydrogenase complement(2355931..2357319) Escherichia coli APEC O78 14482250 YP_007381449.1 CDS APECO78_11380 NC_020163.1 2357420 2358301 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 2357420..2358301 Escherichia coli APEC O78 14482251 YP_007381450.1 CDS APECO78_11385 NC_020163.1 2358786 2359493 D hypothetical protein 2358786..2359493 Escherichia coli APEC O78 14482252 YP_007381451.1 CDS APECO78_11390 NC_020163.1 2359643 2360833 D COG2814 Arabinose efflux permease; arabinose transporter 2359643..2360833 Escherichia coli APEC O78 14482253 YP_007381452.1 CDS APECO78_11395 NC_020163.1 2360858 2361523 R COG2095 Multiple antibiotic transporter; inner membrane protein complement(2360858..2361523) Escherichia coli APEC O78 14482254 YP_007381453.1 CDS APECO78_11400 NC_020163.1 2361735 2362169 D COG1846 Transcriptional regulators; DNA-binding transcriptional repressor MarR 2361735..2362169 Escherichia coli APEC O78 14482255 YP_007381454.1 CDS APECO78_11405 NC_020163.1 2362189 2362572 D COG2207 AraC-type DNA-binding domain-containing proteins; Multiple antibiotic resistance protein marA 2362189..2362572 Escherichia coli APEC O78 14482256 YP_007381455.1 CDS APECO78_11410 NC_020163.1 2362604 2362822 D hypothetical protein 2362604..2362822 Escherichia coli APEC O78 14482257 YP_007381456.1 CDS celA NC_020163.1 2362918 2364318 R COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; 6-phospho-beta-glucosidase complement(2362918..2364318) Escherichia coli APEC O78 14482258 YP_007381457.1 CDS APECO78_11420 NC_020163.1 2364343 2366016 R COG0789 Predicted transcriptional regulators; putative outer membrane protein complement(2364343..2366016) Escherichia coli APEC O78 14482259 YP_007381458.1 CDS APECO78_11425 NC_020163.1 2366072 2366383 R COG1447 Phosphotransferase system cellobiose-specific component IIA; PTS system cellobiose-specific transporter subunit IIA complement(2366072..2366383) Escherichia coli APEC O78 14482260 YP_007381459.1 CDS APECO78_11430 NC_020163.1 2366411 2367733 R COG1455 Phosphotransferase system cellobiose-specific component IIC; PTS system cellobiose-specific transporter subunit IIC complement(2366411..2367733) Escherichia coli APEC O78 14482261 YP_007381460.1 CDS APECO78_11435 NC_020163.1 2367848 2368159 R COG1440 Phosphotransferase system cellobiose-specific component IIB; PTS system cellobiose-specific transporter subunit IIB complement(2367848..2368159) Escherichia coli APEC O78 14482262 YP_007381461.1 CDS APECO78_11440 NC_020163.1 2368358 2369056 D COG2188 Transcriptional regulators; transcriptional regulator 2368358..2369056 Escherichia coli APEC O78 14482263 YP_007381462.1 CDS APECO78_11445 NC_020163.1 2369101 2370000 R COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; O-acetylserine/cysteine export protein complement(2369101..2370000) Escherichia coli APEC O78 14482264 YP_007381463.1 CDS APECO78_11450 NC_020163.1 2370195 2371382 D COG0477 Permeases of the major facilitator superfamily; transporter 2370195..2371382 Escherichia coli APEC O78 14482265 YP_007381464.1 CDS APECO78_11455 NC_020163.1 2371509 2371604 D hypothetical protein 2371509..2371604 Escherichia coli APEC O78 14482266 YP_007381465.1 CDS APECO78_11460 NC_020163.1 2371823 2372713 R COG2199 FOG: GGDEF domain; diguanylate cyclase complement(2371823..2372713) Escherichia coli APEC O78 14482267 YP_007381466.1 CDS APECO78_11465 NC_020163.1 2372968 2373360 R COG3111 Uncharacterized conserved protein; hypothetical protein complement(2372968..2373360) Escherichia coli APEC O78 14482268 YP_007381467.1 CDS APECO78_11470 NC_020163.1 2373636 2374154 D COG1546 Uncharacterized protein (competence- and mitomycin-induced); hypothetical protein 2373636..2374154 Escherichia coli APEC O78 14482269 YP_007381468.1 CDS APECO78_11475 NC_020163.1 2374199 2376244 R COG0339 Zn-dependent oligopeptidases; dipeptidyl carboxypeptidase II complement(2374199..2376244) Escherichia coli APEC O78 14482270 YP_007381469.1 CDS APECO78_11480 NC_020163.1 2376381 2377127 D COG4221 Short-chain alcohol dehydrogenase of unknown specificity; 3-hydroxy acid dehydrogenase 2376381..2377127 Escherichia coli APEC O78 14482271 YP_007381470.1 CDS APECO78_11485 NC_020163.1 2377216 2377902 D COG1802 Transcriptional regulators; hypothetical protein 2377216..2377902 Escherichia coli APEC O78 14482272 YP_007381471.1 CDS APECO78_11490 NC_020163.1 2378080 2378283 D selenoprotein ydfZ 2378080..2378283 Escherichia coli APEC O78 14482273 YP_007381472.1 CDS APECO78_11495 NC_020163.1 2378319 2379779 R COG0246 Mannitol-1-phosphate/altronate dehydrogenases; oxidoreductase complement(2378319..2379779) Escherichia coli APEC O78 14482274 YP_007381473.1 CDS APECO78_11500 NC_020163.1 2379868 2381151 R COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily protein complement(2379868..2381151) Escherichia coli APEC O78 14482275 YP_007381474.1 CDS APECO78_11505 NC_020163.1 2381902 2382168 D Qin prophage DNA-binding transcriptional regulator 2381902..2382168 Escherichia coli APEC O78 14482276 YP_007381475.1 CDS APECO78_11510 NC_020163.1 2382486 2383076 D COG1961 Site-specific recombinases, DNA invertase Pin homologs; putative DNA-invertase 2382486..2383076 Escherichia coli APEC O78 14482277 YP_007381476.1 CDS APECO78_11515 NC_020163.1 2383174 2383749 R putative tail fiber chaperone; Qin prophage complement(2383174..2383749) Escherichia coli APEC O78 14482278 YP_007381477.1 CDS APECO78_11520 NC_020163.1 2383749 2384549 R prophage tail fiber domain-containing protein complement(2383749..2384549) Escherichia coli APEC O78 14482279 YP_007381478.1 CDS APECO78_11525 NC_020163.1 2384654 2385421 R COG0740 Protease subunit of ATP-dependent Clp proteases; putative ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) complement(2384654..2385421) Escherichia coli APEC O78 14482280 YP_007381479.1 CDS APECO78_11530 NC_020163.1 2385435 2386943 R COG5511 Bacteriophage capsid protein; putative portal protein complement(2385435..2386943) Escherichia coli APEC O78 14482281 YP_007381480.1 CDS APECO78_11535 NC_020163.1 2386943 2387155 R hypothetical protein complement(2386943..2387155) Escherichia coli APEC O78 14482282 YP_007381481.1 CDS APECO78_11540 NC_020163.1 2387152 2389185 R COG5525 Bacteriophage tail assembly protein; terminase large subunit complement(2387152..2389185) Escherichia coli APEC O78 14482283 YP_007381482.1 CDS APECO78_11545 NC_020163.1 2389260 2389787 R putative terminase small subunit complement(2389260..2389787) Escherichia coli APEC O78 14482284 YP_007381483.1 CDS APECO78_11550 NC_020163.1 2390352 2390558 R hypothetical protein complement(2390352..2390558) Escherichia coli APEC O78 14482285 YP_007381484.1 CDS APECO78_11555 NC_020163.1 2390859 2391269 D COG5562 Phage envelope protein; hypothetical protein 2390859..2391269 Escherichia coli APEC O78 14482286 YP_007381485.1 CDS APECO78_11560 NC_020163.1 2391421 2391594 R hypothetical protein complement(2391421..2391594) Escherichia coli APEC O78 14482287 YP_007381486.1 CDS APECO78_11565 NC_020163.1 2391766 2391921 R hypothetical protein complement(2391766..2391921) Escherichia coli APEC O78 14482288 YP_007381487.1 CDS APECO78_11570 NC_020163.1 2392268 2392480 R COG1278 Cold shock proteins; cold shock DNA-binding protein complement(2392268..2392480) Escherichia coli APEC O78 14482289 YP_007381488.1 CDS APECO78_11575 NC_020163.1 2392844 2393341 R hypothetical protein complement(2392844..2393341) Escherichia coli APEC O78 14482290 YP_007381489.1 CDS APECO78_11580 NC_020163.1 2393338 2393871 R COG3772 Phage-related lysozyme (muraminidase); lysozyme complement(2393338..2393871) Escherichia coli APEC O78 14482291 YP_007381490.1 CDS APECO78_11585 NC_020163.1 2393868 2394155 R hypothetical protein complement(2393868..2394155) Escherichia coli APEC O78 14482292 YP_007381491.1 CDS APECO78_11590 NC_020163.1 2394184 2394399 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; prophage lysis protein complement(2394184..2394399) Escherichia coli APEC O78 14482293 YP_007381492.1 CDS APECO78_11595 NC_020163.1 2395153 2395368 R COG1278 Cold shock proteins; cold shock-like protein cspB complement(2395153..2395368) Escherichia coli APEC O78 14482294 YP_007381493.1 CDS APECO78_11600 NC_020163.1 2395669 2395881 D COG1278 Cold shock proteins; cold shock-like protein CspF 2395669..2395881 Escherichia coli APEC O78 14482295 YP_007381494.1 CDS APECO78_11605 NC_020163.1 2396303 2397055 R COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; Qin prophage; putative antitermination protein Q complement(2396303..2397055) Escherichia coli APEC O78 14482296 YP_007381495.1 CDS APECO78_11610 NC_020163.1 2397069 2398118 R hypothetical protein complement(2397069..2398118) Escherichia coli APEC O78 14482297 YP_007381496.1 CDS APECO78_11615 NC_020163.1 2398857 2399012 R putative prophage maintenance protein complement(2398857..2399012) Escherichia coli APEC O78 14482298 YP_007381497.1 CDS APECO78_11620 NC_020163.1 2399599 2400624 R hypothetical protein complement(2399599..2400624) Escherichia coli APEC O78 14482299 YP_007381498.1 CDS APECO78_11625 NC_020163.1 2400852 2401151 R hypothetical protein complement(2400852..2401151) Escherichia coli APEC O78 14482300 YP_007381499.1 CDS APECO78_11630 NC_020163.1 2401246 2402151 R COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB complement(2401246..2402151) Escherichia coli APEC O78 14482301 YP_007381500.1 CDS APECO78_11635 NC_020163.1 2402109 2402474 R COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA complement(2402109..2402474) Escherichia coli APEC O78 14482302 YP_007381501.1 CDS APECO78_11640 NC_020163.1 2402654 2403724 R hypothetical protein complement(2402654..2403724) Escherichia coli APEC O78 14482303 YP_007381502.1 CDS APECO78_11645 NC_020163.1 2403796 2404221 R hypothetical protein complement(2403796..2404221) Escherichia coli APEC O78 14482304 YP_007381503.1 CDS APECO78_11650 NC_020163.1 2404205 2404486 R hypothetical protein complement(2404205..2404486) Escherichia coli APEC O78 14482305 YP_007381504.1 CDS APECO78_11655 NC_020163.1 2404587 2405006 D hypothetical protein 2404587..2405006 Escherichia coli APEC O78 14482306 YP_007381505.1 CDS APECO78_11660 NC_020163.1 2405272 2405427 D hypothetical protein 2405272..2405427 Escherichia coli APEC O78 14482307 YP_007381506.1 CDS APECO78_11665 NC_020163.1 2405429 2405557 D hypothetical protein 2405429..2405557 Escherichia coli APEC O78 14482308 YP_007381507.1 CDS APECO78_11670 NC_020163.1 2405587 2405805 D hypothetical protein 2405587..2405805 Escherichia coli APEC O78 14482309 YP_007381508.1 CDS APECO78_11675 NC_020163.1 2406269 2406562 D regulator of cell division encoded by prophage 2406269..2406562 Escherichia coli APEC O78 14482310 YP_007381509.1 CDS APECO78_11680 NC_020163.1 2406559 2406750 D hypothetical protein 2406559..2406750 Escherichia coli APEC O78 14482311 YP_007381510.1 CDS APECO78_11685 NC_020163.1 2406843 2409314 D hypothetical protein 2406843..2409314 Escherichia coli APEC O78 14482312 YP_007381511.1 CDS APECO78_11690 NC_020163.1 2409387 2409638 D excisionase 2409387..2409638 Escherichia coli APEC O78 14482313 YP_007381512.1 CDS APECO78_11695 NC_020163.1 2409658 2410953 D COG0582 Integrase; defective integrase; Qin prophage 2409658..2410953 Escherichia coli APEC O78 14482314 YP_007381513.1 CDS APECO78_11700 NC_020163.1 2411141 2412160 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase complement(2411141..2412160) Escherichia coli APEC O78 14482315 YP_007381514.1 CDS APECO78_11705 NC_020163.1 2412172 2413386 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; bifunctional D-altronate/D-mannonate dehydratase complement(2412172..2413386) Escherichia coli APEC O78 14482316 YP_007381515.1 CDS APECO78_11710 NC_020163.1 2413592 2413918 R COG1742 Uncharacterized conserved protein; hypothetical protein complement(2413592..2413918) Escherichia coli APEC O78 14482317 YP_007381516.1 CDS APECO78_11715 NC_020163.1 2414053 2414394 D hypothetical protein 2414053..2414394 Escherichia coli APEC O78 14482318 YP_007381517.1 CDS APECO78_11720 NC_020163.1 2414429 2414989 D COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; spermidine N1-acetyltransferase 2414429..2414989 Escherichia coli APEC O78 14482319 YP_007381518.1 CDS APECO78_11725 NC_020163.1 2414992 2415702 R lipoprotein complement(2414992..2415702) Escherichia coli APEC O78 14482320 YP_007381519.1 CDS APECO78_11730 NC_020163.1 2415810 2416115 D hypothetical protein 2415810..2416115 Escherichia coli APEC O78 14482321 YP_007381520.1 CDS APECO78_11735 NC_020163.1 2416314 2418740 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative dimethyl sulfoxide reductase major subunit 2416314..2418740 Escherichia coli APEC O78 14482322 YP_007381521.1 CDS APECO78_11740 NC_020163.1 2418801 2421224 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; oxidoreductase subunit 2418801..2421224 Escherichia coli APEC O78 14482323 YP_007381522.1 CDS APECO78_11745 NC_020163.1 2421235 2421852 D COG0437 Fe-S-cluster-containing hydrogenase components 1; putative oxidoreductase Fe-S subunit 2421235..2421852 Escherichia coli APEC O78 14482324 YP_007381523.1 CDS APECO78_11750 NC_020163.1 2421854 2422708 D COG3302 DMSO reductase anchor subunit; oxidoreductase, membrane subunit 2421854..2422708 Escherichia coli APEC O78 14482325 YP_007381524.1 CDS APECO78_11755 NC_020163.1 2422751 2423365 D COG3381 Uncharacterized component of anaerobic dehydrogenases; Twin-arginine leader-binding protein dmsD 2422751..2423365 Escherichia coli APEC O78 14482326 YP_007381525.1 CDS APECO78_11760 NC_020163.1 2423560 2424816 D COG0038 Chloride channel protein EriC; Putative chloride channel 2423560..2424816 Escherichia coli APEC O78 14482327 YP_007381526.1 CDS APECO78_11765 NC_020163.1 2424769 2425464 R COG0132 Dethiobiotin synthetase; putative dithiobiotin synthetase complement(2424769..2425464) Escherichia coli APEC O78 14482328 YP_007381527.1 CDS APECO78_11770 NC_020163.1 2425589 2426809 R COG1940 Transcriptional regulator/sugar kinase; DNA-binding transcriptional repressor DgsA complement(2425589..2426809) Escherichia coli APEC O78 14482329 YP_007381528.1 CDS APECO78_11775 NC_020163.1 2426944 2427837 R COG0583 Transcriptional regulator; putative transcriptional regulator LYSR-type complement(2426944..2427837) Escherichia coli APEC O78 14482330 YP_007381529.1 CDS APECO78_11780 NC_020163.1 2427944 2429197 D COG0477 Permeases of the major facilitator superfamily; putative transporter 2427944..2429197 Escherichia coli APEC O78 14482331 YP_007381530.1 CDS APECO78_11785 NC_020163.1 2429621 2429929 D acid shock protein precursor 2429621..2429929 Escherichia coli APEC O78 14482332 YP_007381531.1 CDS APECO78_11790 NC_020163.1 2430022 2430105 D hypothetical protein 2430022..2430105 Escherichia coli APEC O78 14482333 YP_007381532.1 CDS APECO78_11795 NC_020163.1 2430205 2431026 D COG3591 V8-like Glu-specific endopeptidase; putative peptidase 2430205..2431026 Escherichia coli APEC O78 14482334 YP_007381533.1 CDS APECO78_11800 NC_020163.1 2431065 2431394 R COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtI complement(2431065..2431394) Escherichia coli APEC O78 14482335 YP_007381534.1 CDS APECO78_11805 NC_020163.1 2431381 2431746 R COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtJ complement(2431381..2431746) Escherichia coli APEC O78 14482336 YP_007381535.1 CDS APECO78_11810 NC_020163.1 2432158 2433192 D COG0628 Predicted permease; putative transport protein 2432158..2433192 Escherichia coli APEC O78 14482337 YP_007381536.1 CDS APECO78_11815 NC_020163.1 2433217 2434605 R COG1282 NAD/NADP transhydrogenase beta subunit; pyridine nucleotide transhydrogenase complement(2433217..2434605) Escherichia coli APEC O78 14482338 YP_007381537.1 CDS pntA NC_020163.1 2434616 2436148 R COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(P) transhydrogenase subunit alpha complement(2434616..2436148) Escherichia coli APEC O78 14482339 YP_007381538.1 CDS APECO78_11825 NC_020163.1 2436672 2437616 D hypothetical protein 2436672..2437616 Escherichia coli APEC O78 14482340 YP_007381539.1 CDS APECO78_11830 NC_020163.1 2437802 2439184 D COG0531 Amino acid transporters; putative arginine/ornithine transport protein 2437802..2439184 Escherichia coli APEC O78 14482341 YP_007381540.1 CDS APECO78_11835 NC_020163.1 2439221 2439943 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase 2439221..2439943 Escherichia coli APEC O78 14482342 YP_007381541.1 CDS APECO78_11840 NC_020163.1 2439940 2440275 R COG3136 Uncharacterized membrane protein required for alginate biosynthesis; GlpM family protein complement(2439940..2440275) Escherichia coli APEC O78 14482343 YP_007381542.1 CDS APECO78_11845 NC_020163.1 2440404 2441123 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 2440404..2441123 Escherichia coli APEC O78 14482344 YP_007381543.1 CDS APECO78_11850 NC_020163.1 2441127 2442428 D COG0642 Signal transduction histidine kinase; sensor protein RstB 2441127..2442428 Escherichia coli APEC O78 14482345 YP_007381544.1 CDS APECO78_11855 NC_020163.1 2442504 2443433 D inhibitor of replication at Ter, DNA-binding protein 2442504..2443433 Escherichia coli APEC O78 14482346 YP_007381545.1 CDS fumC NC_020163.1 2443430 2444833 R COG0114 Fumarase; fumarate hydratase complement(2443430..2444833) Escherichia coli APEC O78 14482347 YP_007381546.1 CDS APECO78_11865 NC_020163.1 2444976 2446622 R COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase class I complement(2444976..2446622) Escherichia coli APEC O78 14482348 YP_007381547.1 CDS APECO78_11870 NC_020163.1 2446821 2447996 D COG1482 Phosphomannose isomerase; mannose-6-phosphate isomerase 2446821..2447996 Escherichia coli APEC O78 14482349 YP_007381548.1 CDS APECO78_11875 NC_020163.1 2448097 2449605 D COG5339 Uncharacterized protein conserved in bacteria; hypothetical protein 2448097..2449605 Escherichia coli APEC O78 14482350 YP_007381549.1 CDS APECO78_11880 NC_020163.1 2449650 2450915 R outer membrane porin protein complement(2449650..2450915) Escherichia coli APEC O78 14482351 YP_007381550.1 CDS APECO78_11885 NC_020163.1 2450954 2451469 R COG2211 Na+/melibiose symporter and related transporters; glucuronide transporter complement(2450954..2451469) Escherichia coli APEC O78 14482352 YP_007381551.1 CDS APECO78_11890 NC_020163.1 2451433 2452326 R COG2211 Na+/melibiose symporter and related transporters; glucuronide transporter complement(2451433..2452326) Escherichia coli APEC O78 14482353 YP_007381552.1 CDS APECO78_11895 NC_020163.1 2452323 2454134 R COG3250 Beta-galactosidase/beta-glucuronidase; beta-D-glucuronidase complement(2452323..2454134) Escherichia coli APEC O78 14482354 YP_007381553.1 CDS APECO78_11900 NC_020163.1 2454523 2455113 R COG1309 Transcriptional regulator; repressor for uid operon complement(2454523..2455113) Escherichia coli APEC O78 14482355 YP_007381554.1 CDS APECO78_11905 NC_020163.1 2455342 2456109 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 7-alpha-hydroxysteroid dehydrogenase complement(2455342..2456109) Escherichia coli APEC O78 14482356 YP_007381555.1 CDS APECO78_11910 NC_020163.1 2456221 2457249 R COG1609 Transcriptional regulators; DNA-binding transcriptional repressor MalI complement(2456221..2457249) Escherichia coli APEC O78 14482357 YP_007381556.1 CDS APECO78_11915 NC_020163.1 2457424 2459016 D COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; bifunctional PTS system maltose and glucose-specific transporter subunits IICB 2457424..2459016 Escherichia coli APEC O78 14482358 YP_007381557.1 CDS APECO78_11920 NC_020163.1 2459026 2460198 D COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; bifunctional beta-cystathionase/maltose regulon regulatory protein 2459026..2460198 Escherichia coli APEC O78 14482359 YP_007381558.1 CDS APECO78_11925 NC_020163.1 2460302 2461303 D COG1816 Adenosine deaminase; adenosine deaminase 2460302..2461303 Escherichia coli APEC O78 14482360 YP_007381559.1 CDS APECO78_11930 NC_020163.1 2461338 2462378 R COG0673 Predicted dehydrogenases and related proteins; hypothetical protein complement(2461338..2462378) Escherichia coli APEC O78 14482361 YP_007381560.1 CDS APECO78_11935 NC_020163.1 2462621 2462746 D hypothetical protein 2462621..2462746 Escherichia coli APEC O78 14482362 YP_007381561.1 CDS APECO78_11940 NC_020163.1 2463019 2463234 D oriC-binding nucleoid-associated protein 2463019..2463234 Escherichia coli APEC O78 14482363 YP_007381562.1 CDS APECO78_11945 NC_020163.1 2463320 2463760 D hypothetical protein 2463320..2463760 Escherichia coli APEC O78 14482364 YP_007381563.1 CDS APECO78_11950 NC_020163.1 2463837 2464418 D COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA; electron transport complex protein RsxA 2463837..2464418 Escherichia coli APEC O78 14482365 YP_007381564.1 CDS APECO78_11955 NC_020163.1 2464418 2464996 D COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB; electron transport complex protein RnfB 2464418..2464996 Escherichia coli APEC O78 14482366 YP_007381565.1 CDS APECO78_11960 NC_020163.1 2464989 2467115 D COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; electron transport complex protein RnfC 2464989..2467115 Escherichia coli APEC O78 14482367 YP_007381566.1 CDS APECO78_11965 NC_020163.1 2467116 2468174 D COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD; electron transport complex protein RnfD 2467116..2468174 Escherichia coli APEC O78 14482368 YP_007381567.1 CDS APECO78_11970 NC_020163.1 2468178 2468798 D COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG; electron transport complex protein RnfG 2468178..2468798 Escherichia coli APEC O78 14482369 YP_007381568.1 CDS APECO78_11975 NC_020163.1 2468802 2469497 D COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE; electron transport complex protein RsxE 2468802..2469497 Escherichia coli APEC O78 14482370 YP_007381569.1 CDS APECO78_11980 NC_020163.1 2469497 2470132 D COG0177 Predicted EndoIII-related endonuclease; endonuclease III 2469497..2470132 Escherichia coli APEC O78 14482371 YP_007381570.1 CDS APECO78_11985 NC_020163.1 2470260 2470460 D hypothetical protein 2470260..2470460 Escherichia coli APEC O78 14482372 YP_007381571.1 CDS APECO78_11990 NC_020163.1 2470743 2472245 D COG3104 Dipeptide/tripeptide permease; inner membrane transporter YhiP 2470743..2472245 Escherichia coli APEC O78 14482373 YP_007381572.1 CDS APECO78_11995 NC_020163.1 2472350 2472955 D COG0625 Glutathione S-transferase; glutathionine S-transferase 2472350..2472955 Escherichia coli APEC O78 14482374 YP_007381573.1 CDS APECO78_12000 NC_020163.1 2472999 2473859 R COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxamine kinase complement(2472999..2473859) Escherichia coli APEC O78 14482375 YP_007381574.1 CDS APECO78_12005 NC_020163.1 2473921 2475195 R COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA ligase complement(2473921..2475195) Escherichia coli APEC O78 14482376 YP_007381575.1 CDS APECO78_12010 NC_020163.1 2475324 2475980 R COG0259 Pyridoxamine-phosphate oxidase; pyridoxine 5'-phosphate oxidase complement(2475324..2475980) Escherichia coli APEC O78 14482377 YP_007381576.1 CDS APECO78_12015 NC_020163.1 2476039 2476368 R COG3895 Predicted periplasmic protein; lysozyme inhibitor complement(2476039..2476368) Escherichia coli APEC O78 14482378 YP_007381577.1 CDS APECO78_12020 NC_020163.1 2476466 2477575 R COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases; anhydro-N-acetylmuramic acid kinase complement(2476466..2477575) Escherichia coli APEC O78 14482379 YP_007381578.1 CDS APECO78_12025 NC_020163.1 2477849 2478316 D COG3133 Outer membrane lipoprotein; outer membrane lipoprotein SlyB 2477849..2478316 Escherichia coli APEC O78 14482380 YP_007381579.1 CDS APECO78_12030 NC_020163.1 2478363 2478797 R COG1846 Transcriptional regulators; transcriptional regulator SlyA complement(2478363..2478797) Escherichia coli APEC O78 14482381 YP_007381580.1 CDS APECO78_12035 NC_020163.1 2478998 2479234 D hypothetical protein 2478998..2479234 Escherichia coli APEC O78 14482382 YP_007381581.1 CDS APECO78_12040 NC_020163.1 2479237 2480094 D COG1566 Multidrug resistance efflux pump; undecaprenyl pyrophosphate phosphatase 2479237..2480094 Escherichia coli APEC O78 14482383 YP_007381582.1 CDS APECO78_12045 NC_020163.1 2480094 2482058 D COG1289 Predicted membrane protein; inner membrane protein 2480094..2482058 Escherichia coli APEC O78 14482384 YP_007381583.1 CDS APECO78_12050 NC_020163.1 2482093 2482614 R COG2032 Cu/Zn superoxide dismutase; superoxide dismutase complement(2482093..2482614) Escherichia coli APEC O78 14482385 YP_007381584.1 CDS APECO78_12055 NC_020163.1 2482695 2483591 R COG4989 Predicted oxidoreductase; oxidoreductase ydhF complement(2482695..2483591) Escherichia coli APEC O78 14482386 YP_007381585.1 CDS APECO78_12060 NC_020163.1 2483640 2483879 R COG3313 Predicted Fe-S protein; hypothetical protein complement(2483640..2483879) Escherichia coli APEC O78 14482387 YP_007381586.1 CDS APECO78_12065 NC_020163.1 2483982 2484581 D COG1309 Transcriptional regulator; transcriptional repressor NemR 2483982..2484581 Escherichia coli APEC O78 14482388 YP_007381587.1 CDS APECO78_12070 NC_020163.1 2484618 2485715 D COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; N-ethylmaleimide reductase 2484618..2485715 Escherichia coli APEC O78 14482389 YP_007381588.1 CDS APECO78_12075 NC_020163.1 2485796 2486203 D COG0346 Lactoylglutathione lyase and related lyases; glyoxalase I 2485796..2486203 Escherichia coli APEC O78 14482390 YP_007381589.1 CDS APECO78_12080 NC_020163.1 2486306 2486953 D COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; ribonuclease T 2486306..2486953 Escherichia coli APEC O78 14482391 YP_007381590.1 CDS APECO78_12085 NC_020163.1 2487046 2491662 D COG1201 Lhr-like helicases; ATP-dependent helicase 2487046..2491662 Escherichia coli APEC O78 14482392 YP_007381591.1 CDS APECO78_12090 NC_020163.1 2491713 2492060 R COG0278 Glutaredoxin-related protein; glutaredoxin-4 complement(2491713..2492060) Escherichia coli APEC O78 14482393 YP_007381592.1 CDS APECO78_12095 NC_020163.1 2492394 2493209 D COG0791 Cell wall-associated hydrolases (invasion-associated proteins); lipoprotein 2492394..2493209 Escherichia coli APEC O78 14482394 YP_007381593.1 CDS APECO78_12100 NC_020163.1 2493337 2493918 D COG0605 Superoxide dismutase; superoxide dismutase 2493337..2493918 Escherichia coli APEC O78 14482395 YP_007381594.1 CDS APECO78_12105 NC_020163.1 2494064 2495233 R COG2814 Arabinose efflux permease; transporter complement(2494064..2495233) Escherichia coli APEC O78 14482396 YP_007381595.1 CDS APECO78_12110 NC_020163.1 2495399 2495488 R transporter complement(2495399..2495488) Escherichia coli APEC O78 14482397 YP_007381596.1 CDS APECO78_12115 NC_020163.1 2495787 2496812 D COG1609 Transcriptional regulators; DNA-binding transcriptional repressor PurR 2495787..2496812 Escherichia coli APEC O78 14482398 YP_007381597.1 CDS APECO78_12120 NC_020163.1 2496809 2497741 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator complement(2496809..2497741) Escherichia coli APEC O78 14482399 YP_007381598.1 CDS APECO78_12125 NC_020163.1 2497854 2499065 D COG0477 Permeases of the major facilitator superfamily; transporter 2497854..2499065 Escherichia coli APEC O78 14482400 YP_007381599.1 CDS APECO78_12130 NC_020163.1 2499356 2500504 D COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane fatty acyl phospholipid synthase 2499356..2500504 Escherichia coli APEC O78 14482401 YP_007381600.1 CDS APECO78_12135 NC_020163.1 2500544 2501185 R COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha complement(2500544..2501185) Escherichia coli APEC O78 14482402 YP_007381601.1 CDS APECO78_12140 NC_020163.1 2501400 2502773 D COG0534 Na+-driven multidrug efflux pump; multidrug efflux protein 2501400..2502773 Escherichia coli APEC O78 14482403 YP_007381602.1 CDS APECO78_12145 NC_020163.1 2502814 2504070 R hypothetical protein complement(2502814..2504070) Escherichia coli APEC O78 14482404 YP_007381603.1 CDS APECO78_12150 NC_020163.1 2504643 2504948 D COG0113 Delta-aminolevulinic acid dehydratase; monooxygenase 2504643..2504948 Escherichia coli APEC O78 14484620 YP_007381604.1 CDS APECO78_12155 NC_020163.1 2505074 2506678 D COG4529 Uncharacterized protein conserved in bacteria; hypothetical protein 2505074..2506678 Escherichia coli APEC O78 14482406 YP_007381605.1 CDS APECO78_12160 NC_020163.1 2506690 2507502 R hypothetical protein complement(2506690..2507502) Escherichia coli APEC O78 14482407 YP_007381606.1 CDS APECO78_12165 NC_020163.1 2507506 2508291 R thiosulfate reductase cytochrome B subunit complement(2507506..2508291) Escherichia coli APEC O78 14482408 YP_007381607.1 CDS APECO78_12170 NC_020163.1 2508288 2509007 R COG0437 Fe-S-cluster-containing hydrogenase components 1; 4Fe-4S ferredoxin-type protein complement(2508288..2509007) Escherichia coli APEC O78 14482409 YP_007381608.1 CDS APECO78_12175 NC_020163.1 2509020 2509664 R hypothetical protein complement(2509020..2509664) Escherichia coli APEC O78 14482410 YP_007381609.1 CDS APECO78_12180 NC_020163.1 2509668 2511770 R COG2414 Aldehyde:ferredoxin oxidoreductase; oxidoreductase complement(2509668..2511770) Escherichia coli APEC O78 14482411 YP_007381610.1 CDS APECO78_12185 NC_020163.1 2511791 2512417 R COG0437 Fe-S-cluster-containing hydrogenase components 1; hypothetical protein complement(2511791..2512417) Escherichia coli APEC O78 14482412 YP_007381611.1 CDS APECO78_12190 NC_020163.1 2512873 2513082 R hypothetical protein complement(2512873..2513082) Escherichia coli APEC O78 14482413 YP_007381612.1 CDS APECO78_12195 NC_020163.1 2513638 2515050 D COG0469 Pyruvate kinase; Pyruvate kinase I 2513638..2515050 Escherichia coli APEC O78 14482414 YP_007381613.1 CDS APECO78_12200 NC_020163.1 2515361 2515597 D COG4238 Murein lipoprotein; murein lipoprotein 2515361..2515597 Escherichia coli APEC O78 14482415 YP_007381614.1 CDS APECO78_12205 NC_020163.1 2515661 2516665 R COG1376 Uncharacterized protein conserved in bacteria; murein L,D-transpeptidase complement(2515661..2516665) Escherichia coli APEC O78 14482416 YP_007381615.1 CDS APECO78_12210 NC_020163.1 2516814 2517230 R COG2166 SufE protein probably involved in Fe-S center assembly; cysteine desufuration protein SufE complement(2516814..2517230) Escherichia coli APEC O78 14482417 YP_007381616.1 CDS APECO78_12215 NC_020163.1 2517243 2518463 R COG0520 Selenocysteine lyase; bifunctional cysteine desulfurase/selenocysteine lyase complement(2517243..2518463) Escherichia coli APEC O78 14482418 YP_007381617.1 CDS APECO78_12220 NC_020163.1 2518460 2519179 R COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufD complement(2518460..2519179) Escherichia coli APEC O78 14482419 YP_007381618.1 CDS APECO78_12225 NC_020163.1 2519216 2519731 R COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; component of SufBCD complex complement(2519216..2519731) Escherichia coli APEC O78 14482420 YP_007381619.1 CDS sufC NC_020163.1 2519706 2520452 R COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; cysteine desulfurase ATPase component complement(2519706..2520452) Escherichia coli APEC O78 14482421 YP_007381620.1 CDS APECO78_12235 NC_020163.1 2520462 2521949 R COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufB complement(2520462..2521949) Escherichia coli APEC O78 14482422 YP_007381621.1 CDS sufA NC_020163.1 2521958 2522326 R COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly scaffold protein complement(2521958..2522326) Escherichia coli APEC O78 14482423 YP_007381622.1 CDS APECO78_12245 NC_020163.1 2522875 2523144 R hypothetical protein complement(2522875..2523144) Escherichia coli APEC O78 14482424 YP_007381623.1 CDS APECO78_12250 NC_020163.1 2523163 2523573 R COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; acyl-CoA esterase complement(2523163..2523573) Escherichia coli APEC O78 14482425 YP_007381624.1 CDS APECO78_12255 NC_020163.1 2523570 2526626 R COG0277 FAD/FMN-containing dehydrogenases; FAD-linked oxidoreductase complement(2523570..2526626) Escherichia coli APEC O78 14482426 YP_007381625.1 CDS APECO78_12260 NC_020163.1 2527015 2528127 D COG0628 Predicted permease; inner membrane protein 2527015..2528127 Escherichia coli APEC O78 14482427 YP_007381626.1 CDS APECO78_12265 NC_020163.1 2528556 2528912 D hypothetical protein 2528556..2528912 Escherichia coli APEC O78 14482428 YP_007381627.1 CDS APECO78_12270 NC_020163.1 2529012 2530226 D COG0477 Permeases of the major facilitator superfamily; putative transporter; MFS superfamily protein 2529012..2530226 Escherichia coli APEC O78 14482429 YP_007381628.1 CDS APECO78_12275 NC_020163.1 2530453 2531718 D COG0477 Permeases of the major facilitator superfamily; transporter, major facilitator family protein 2530453..2531718 Escherichia coli APEC O78 14482430 YP_007381629.1 CDS APECO78_12280 NC_020163.1 2531730 2532596 D COG0169 Shikimate 5-dehydrogenase; putative oxidoreductase 2531730..2532596 Escherichia coli APEC O78 14482431 YP_007381630.1 CDS aroD NC_020163.1 2532627 2533385 D COG0710 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase 2532627..2533385 Escherichia coli APEC O78 14482432 YP_007381631.1 CDS APECO78_12290 NC_020163.1 2533530 2535125 D COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; acetyl-CoA: acetoacetyl-CoA transferase subunit alpha/beta 2533530..2535125 Escherichia coli APEC O78 14482433 YP_007381632.1 CDS APECO78_12295 NC_020163.1 2535139 2536290 D COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase 2535139..2536290 Escherichia coli APEC O78 14482434 YP_007381633.1 CDS APECO78_12300 NC_020163.1 2536333 2537244 R COG2207 AraC-type DNA-binding domain-containing proteins; HTH-type transcriptional regulator ydiP complement(2536333..2537244) Escherichia coli APEC O78 14482435 YP_007381634.1 CDS APECO78_12305 NC_020163.1 2537347 2537523 R hypothetical protein complement(2537347..2537523) Escherichia coli APEC O78 14482436 YP_007381635.1 CDS APECO78_12310 NC_020163.1 2537560 2538324 D COG2086 Electron transfer flavoprotein, beta subunit; hypothetical protein 2537560..2538324 Escherichia coli APEC O78 14482437 YP_007381636.1 CDS APECO78_12315 NC_020163.1 2538344 2539282 D COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit YdiR 2538344..2539282 Escherichia coli APEC O78 14482438 YP_007381637.1 CDS APECO78_12320 NC_020163.1 2539338 2540627 D COG0644 Dehydrogenases (flavoproteins); oxidoreductase 2539338..2540627 Escherichia coli APEC O78 14482439 YP_007381638.1 CDS APECO78_12325 NC_020163.1 2540624 2540917 D COG2440 Ferredoxin-like protein; 4Fe-4S ferredoxin 2540624..2540917 Escherichia coli APEC O78 14482440 YP_007381639.1 CDS APECO78_12330 NC_020163.1 2540920 2542620 D COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; short chain acyl-CoA synthetase 2540920..2542620 Escherichia coli APEC O78 14482441 YP_007381640.1 CDS APECO78_12335 NC_020163.1 2542677 2545055 R COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase complement(2542677..2545055) Escherichia coli APEC O78 14482442 YP_007381641.1 CDS APECO78_12340 NC_020163.1 2545388 2546221 D COG1806 Uncharacterized protein conserved in bacteria; PEP synthetase regulatory protein 2545388..2546221 Escherichia coli APEC O78 14482443 YP_007381642.1 CDS APECO78_12345 NC_020163.1 2546378 2547424 D COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 2546378..2547424 Escherichia coli APEC O78 14482444 YP_007381643.1 CDS APECO78_12350 NC_020163.1 2547556 2547747 D COG4256 Hemin uptake protein; hypothetical protein 2547556..2547747 Escherichia coli APEC O78 14482445 YP_007381644.1 CDS APECO78_12355 NC_020163.1 2547751 2549187 R COG0397 Uncharacterized conserved protein; hypothetical protein complement(2547751..2549187) Escherichia coli APEC O78 14482446 YP_007381645.1 CDS APECO78_12360 NC_020163.1 2549250 2549963 R COG2200 FOG: EAL domain; hypothetical protein complement(2549250..2549963) Escherichia coli APEC O78 14482447 YP_007381646.1 CDS APECO78_12365 NC_020163.1 2550210 2550674 R COG0791 Cell wall-associated hydrolases (invasion-associated proteins); lipoprotein complement(2550210..2550674) Escherichia coli APEC O78 14482448 YP_007381647.1 CDS APECO78_12370 NC_020163.1 2550752 2551501 R COG4138 ABC-type cobalamin transport system, ATPase component; vitamin B12-transporter ATPase complement(2550752..2551501) Escherichia coli APEC O78 14482449 YP_007381648.1 CDS btuE NC_020163.1 2551501 2552052 R COG0386 Glutathione peroxidase; glutathione peroxidase complement(2551501..2552052) Escherichia coli APEC O78 14482450 YP_007381649.1 CDS APECO78_12380 NC_020163.1 2552115 2553095 R COG4139 ABC-type cobalamin transport system, permease component; vtamin B12-transporter permease complement(2552115..2553095) Escherichia coli APEC O78 14482451 YP_007381650.1 CDS APECO78_12385 NC_020163.1 2553196 2553495 R COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit alpha complement(2553196..2553495) Escherichia coli APEC O78 14482452 YP_007381651.1 CDS pheT NC_020163.1 2553500 2555887 R COG0073 EMAP domain; phenylalanyl-tRNA ligase subunit beta complement(2553500..2555887) Escherichia coli APEC O78 14482453 YP_007381652.1 CDS APECO78_12395 NC_020163.1 2555902 2556885 R COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA synthetase subunit alpha complement(2555902..2556885) Escherichia coli APEC O78 14482454 YP_007381653.1 CDS APECO78_12400 NC_020163.1 2556999 2557094 R hypothetical protein complement(2556999..2557094) Escherichia coli APEC O78 14482455 YP_007381654.1 CDS APECO78_12405 NC_020163.1 2557336 2557692 R COG0292 Ribosomal protein L20; 50S ribosomal protein L20 complement(2557336..2557692) Escherichia coli APEC O78 14482456 YP_007381655.1 CDS rpmI NC_020163.1 2557745 2557942 R COG0291 Ribosomal protein L35; 50S ribosomal protein L35 complement(2557745..2557942) Escherichia coli APEC O78 14482457 YP_007381656.1 CDS APECO78_12415 NC_020163.1 2558039 2558473 R COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 complement(2558039..2558473) Escherichia coli APEC O78 14482458 YP_007381657.1 CDS thrS NC_020163.1 2558585 2560513 R COG0441 Threonyl-tRNA synthetase; threonyl-tRNA ligase complement(2558585..2560513) Escherichia coli APEC O78 14482459 YP_007381658.1 CDS APECO78_12425 NC_020163.1 2561037 2562671 D Ankyrin repeat protein B 2561037..2562671 Escherichia coli APEC O78 14482460 YP_007381659.1 CDS APECO78_12430 NC_020163.1 2562658 2562906 D hypothetical protein 2562658..2562906 Escherichia coli APEC O78 14482461 YP_007381660.1 CDS APECO78_12435 NC_020163.1 2563082 2563189 D hypothetical protein 2563082..2563189 Escherichia coli APEC O78 14482462 YP_007381661.1 CDS APECO78_12440 NC_020163.1 2563242 2564000 R COG3137 Putative salt-induced outer membrane protein; hypothetical protein complement(2563242..2564000) Escherichia coli APEC O78 14482463 YP_007381662.1 CDS APECO78_12445 NC_020163.1 2564287 2565216 D COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 6-phosphofructokinase 2 2564287..2565216 Escherichia coli APEC O78 14482464 YP_007381663.1 CDS APECO78_12450 NC_020163.1 2565317 2565607 D hypothetical protein 2565317..2565607 Escherichia coli APEC O78 14482465 YP_007381664.1 CDS APECO78_12455 NC_020163.1 2565713 2566573 D COG3001 Fructosamine-3-kinase; fructosamine kinase 2565713..2566573 Escherichia coli APEC O78 14482466 YP_007381665.1 CDS APECO78_12460 NC_020163.1 2566614 2567150 R inner membrane protein complement(2566614..2567150) Escherichia coli APEC O78 14482467 YP_007381666.1 CDS APECO78_12465 NC_020163.1 2567297 2567965 D COG0637 Predicted phosphatase/phosphohexomutase; 2-deoxyglucose-6-phosphatase 2567297..2567965 Escherichia coli APEC O78 14482468 YP_007381667.1 CDS APECO78_12470 NC_020163.1 2568128 2568718 D COG1988 Predicted membrane-bound metal-dependent hydrolases; hypothetical protein 2568128..2568718 Escherichia coli APEC O78 14482469 YP_007381668.1 CDS APECO78_12475 NC_020163.1 2568851 2570242 D COG1823 Predicted Na+/dicarboxylate symporter; cation-acid symporter 2568851..2570242 Escherichia coli APEC O78 14482470 YP_007381669.1 CDS APECO78_12480 NC_020163.1 2570246 2571061 R hypothetical protein complement(2570246..2571061) Escherichia coli APEC O78 14482471 YP_007381670.1 CDS APECO78_12485 NC_020163.1 2571338 2571580 R cell division modulator complement(2571338..2571580) Escherichia coli APEC O78 14482472 YP_007381671.1 CDS katE NC_020163.1 2571784 2574045 D COG0753 Catalase; hydroperoxidase II 2571784..2574045 Escherichia coli APEC O78 14482473 YP_007381672.1 CDS APECO78_12495 NC_020163.1 2574092 2574850 R COG3394 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2574092..2574850) Escherichia coli APEC O78 14482474 YP_007381673.1 CDS APECO78_12500 NC_020163.1 2574863 2576215 R COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; diacetylchitobiose-6-phosphate hydrolase complement(2574863..2576215) Escherichia coli APEC O78 14482475 YP_007381674.1 CDS APECO78_12505 NC_020163.1 2576319 2577083 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator ChbR complement(2576319..2577083) Escherichia coli APEC O78 14482476 YP_007381675.1 CDS APECO78_12510 NC_020163.1 2577168 2577518 R COG1447 Phosphotransferase system cellobiose-specific component IIA; N,N-diacetylchitobiose-specific phosphotransferase enzyme IIA component complement(2577168..2577518) Escherichia coli APEC O78 14482477 YP_007381676.1 CDS APECO78_12515 NC_020163.1 2577569 2578927 R COG1455 Phosphotransferase system cellobiose-specific component IIC; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC complement(2577569..2578927) Escherichia coli APEC O78 14482478 YP_007381677.1 CDS APECO78_12520 NC_020163.1 2579012 2579332 R COG1440 Phosphotransferase system cellobiose-specific component IIB; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB complement(2579012..2579332) Escherichia coli APEC O78 14482479 YP_007381678.1 CDS APECO78_12525 NC_020163.1 2579631 2579969 R DNA-binding transcriptional activator OsmE complement(2579631..2579969) Escherichia coli APEC O78 14482480 YP_007381679.1 CDS nadE NC_020163.1 2580171 2580998 D COG0171 NAD synthase; NAD synthetase 2580171..2580998 Escherichia coli APEC O78 14482481 YP_007381680.1 CDS APECO78_12535 NC_020163.1 2581228 2582115 D COG0322 Nuclease subunit of the excinuclease complex; nucleotide excision repair endonuclease 2581228..2582115 Escherichia coli APEC O78 14482482 YP_007381681.1 CDS APECO78_12540 NC_020163.1 2582075 2582650 R COG3758 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2582075..2582650) Escherichia coli APEC O78 14482483 YP_007381682.1 CDS APECO78_12545 NC_020163.1 2582853 2583338 R COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; periplasmic protein complement(2582853..2583338) Escherichia coli APEC O78 14482484 YP_007381683.1 CDS APECO78_12550 NC_020163.1 2583668 2584636 R COG2988 Succinylglutamate desuccinylase; succinylglutamate desuccinylase complement(2583668..2584636) Escherichia coli APEC O78 14482485 YP_007381684.1 CDS APECO78_12555 NC_020163.1 2584629 2585972 R COG3724 Succinylarginine dihydrolase; succinylarginine dihydrolase complement(2584629..2585972) Escherichia coli APEC O78 14482486 YP_007381685.1 CDS astD NC_020163.1 2585969 2587447 R COG1012 NAD-dependent aldehyde dehydrogenases; succinylglutamic semialdehyde dehydrogenase complement(2585969..2587447) Escherichia coli APEC O78 14482487 YP_007381686.1 CDS APECO78_12565 NC_020163.1 2587444 2588478 R COG3138 Arginine/ornithine N-succinyltransferase beta subunit; arginine succinyltransferase complement(2587444..2588478) Escherichia coli APEC O78 14482488 YP_007381687.1 CDS APECO78_12570 NC_020163.1 2588475 2589695 R COG4992 Ornithine/acetylornithine aminotransferase; bifunctional succinylornithine transaminase/acetylornithine transaminase complement(2588475..2589695) Escherichia coli APEC O78 14482489 YP_007381688.1 CDS APECO78_12575 NC_020163.1 2589955 2590053 R hypothetical protein complement(2589955..2590053) Escherichia coli APEC O78 14482490 YP_007381689.1 CDS APECO78_12580 NC_020163.1 2590141 2590947 D COG0708 Exonuclease III; exonuclease III 2590141..2590947 Escherichia coli APEC O78 14482491 YP_007381690.1 CDS APECO78_12585 NC_020163.1 2591114 2591824 D COG0398 Uncharacterized conserved protein; inner membrane protein 2591114..2591824 Escherichia coli APEC O78 14482492 YP_007381691.1 CDS APECO78_12590 NC_020163.1 2591829 2592506 D hypothetical protein 2591829..2592506 Escherichia coli APEC O78 14482493 YP_007381692.1 CDS APECO78_12595 NC_020163.1 2592521 2593228 D COG0398 Uncharacterized conserved protein; inner membrane protein 2592521..2593228 Escherichia coli APEC O78 14482494 YP_007381693.1 CDS APECO78_12600 NC_020163.1 2593228 2593776 D COG2128 Uncharacterized conserved protein; carboxymuconolactone decarboxylase family protein 2593228..2593776 Escherichia coli APEC O78 14482495 YP_007381694.1 CDS APECO78_12605 NC_020163.1 2593786 2594952 D COG4134 ABC-type uncharacterized transport system, periplasmic component; hypothetical protein 2593786..2594952 Escherichia coli APEC O78 14482496 YP_007381695.1 CDS APECO78_12610 NC_020163.1 2594925 2596460 D COG4135 ABC-type uncharacterized transport system, permease component; fused transporter subunits of ABC superfamily: membrane component 2594925..2596460 Escherichia coli APEC O78 14482497 YP_007381696.1 CDS APECO78_12615 NC_020163.1 2596460 2597113 D COG4136 ABC-type uncharacterized transport system, ATPase component; ABC transporter ATP-binding protein 2596460..2597113 Escherichia coli APEC O78 14482498 YP_007381697.1 CDS APECO78_12620 NC_020163.1 2597180 2598487 D COG2897 Rhodanese-related sulfurtransferase; thiosulfate sulfur transferase 2597180..2598487 Escherichia coli APEC O78 14482499 YP_007381698.1 CDS APECO78_12625 NC_020163.1 2598496 2599116 R COG0558 Phosphatidylglycerophosphate synthase; phosphatidyl transferase, inner membrane protein complement(2598496..2599116) Escherichia coli APEC O78 14482500 YP_007381699.1 CDS APECO78_12630 NC_020163.1 2599203 2599610 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 2599203..2599610 Escherichia coli APEC O78 14482501 YP_007381700.1 CDS APECO78_12635 NC_020163.1 2599576 2599848 R hypothetical protein complement(2599576..2599848) Escherichia coli APEC O78 14482502 YP_007381701.1 CDS APECO78_12640 NC_020163.1 2600084 2601427 D COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 2600084..2601427 Escherichia coli APEC O78 14482503 YP_007381702.1 CDS APECO78_12645 NC_020163.1 2601544 2602584 R hypothetical protein complement(2601544..2602584) Escherichia coli APEC O78 14482504 YP_007381703.1 CDS APECO78_12650 NC_020163.1 2602712 2604673 R COG0550 Topoisomerase IA; DNA topoisomerase III complement(2602712..2604673) Escherichia coli APEC O78 14482505 YP_007381704.1 CDS APECO78_12655 NC_020163.1 2604678 2605721 R COG0709 Selenophosphate synthase; selenophosphate synthetase complement(2604678..2605721) Escherichia coli APEC O78 14482506 YP_007381705.1 CDS APECO78_12660 NC_020163.1 2605838 2606389 R COG0778 Nitroreductase; oxidoreductase complement(2605838..2606389) Escherichia coli APEC O78 14482507 YP_007381706.1 CDS APECO78_12665 NC_020163.1 2606550 2608406 D COG0616 Periplasmic serine proteases (ClpP class); protease 4 2606550..2608406 Escherichia coli APEC O78 14482508 YP_007381707.1 CDS APECO78_12670 NC_020163.1 2608573 2609589 D COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; asparaginase 2608573..2609589 Escherichia coli APEC O78 14482509 YP_007381708.1 CDS APECO78_12675 NC_020163.1 2609600 2610241 D COG1335 Amidases related to nicotinamidase; nicotinamidase/pyrazinamidase 2609600..2610241 Escherichia coli APEC O78 14482510 YP_007381709.1 CDS APECO78_12680 NC_020163.1 2610402 2610674 R COG3139 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2610402..2610674) Escherichia coli APEC O78 14482511 YP_007381710.1 CDS APECO78_12685 NC_020163.1 2610716 2611129 R COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; methionine sulfoxide reductase B complement(2610716..2611129) Escherichia coli APEC O78 14482512 YP_007381711.1 CDS APECO78_12690 NC_020163.1 2611471 2612466 D COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2611471..2612466 Escherichia coli APEC O78 14482513 YP_007381712.1 CDS APECO78_12695 NC_020163.1 2612550 2613434 D COG0676 Uncharacterized enzymes related to aldose 1-epimerase; aldose 1-epimerase 2612550..2613434 Escherichia coli APEC O78 14482514 YP_007381713.1 CDS APECO78_12700 NC_020163.1 2613485 2614339 R COG0656 Aldo/keto reductases, related to diketogulonate reductase; putative oxidoreductase complement(2613485..2614339) Escherichia coli APEC O78 14482515 YP_007381714.1 CDS APECO78_12705 NC_020163.1 2614429 2615175 R COG3713 Outer membrane protein V; MltA-interacting protein complement(2614429..2615175) Escherichia coli APEC O78 14482516 YP_007381715.1 CDS APECO78_12710 NC_020163.1 2615611 2617545 D COG2766 Putative Ser protein kinase; PrkA family serine protein kinase 2615611..2617545 Escherichia coli APEC O78 14482517 YP_007381716.1 CDS APECO78_12715 NC_020163.1 2617658 2618941 D COG2718 Uncharacterized conserved protein; hypothetical protein 2617658..2618941 Escherichia coli APEC O78 14482518 YP_007381717.1 CDS APECO78_12720 NC_020163.1 2619088 2620563 D COG2199 FOG: GGDEF domain; diguanylate cyclase 2619088..2620563 Escherichia coli APEC O78 14482519 YP_007381718.1 CDS APECO78_12725 NC_020163.1 2620744 2622234 D COG2199 FOG: GGDEF domain; hypothetical protein 2620744..2622234 Escherichia coli APEC O78 14482520 YP_007381719.1 CDS APECO78_12730 NC_020163.1 2622277 2622780 D COG2606 Uncharacterized conserved protein; hypothetical protein 2622277..2622780 Escherichia coli APEC O78 14482521 YP_007381720.1 CDS APECO78_12735 NC_020163.1 2622781 2622933 R hypothetical protein complement(2622781..2622933) Escherichia coli APEC O78 14482522 YP_007381721.1 CDS APECO78_12740 NC_020163.1 2623055 2623501 D COG2707 Predicted membrane protein; hypothetical protein 2623055..2623501 Escherichia coli APEC O78 14482523 YP_007381722.1 CDS APECO78_12745 NC_020163.1 2623458 2624279 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator, ARAC-type complement(2623458..2624279) Escherichia coli APEC O78 14482524 YP_007381723.1 CDS APECO78_12750 NC_020163.1 2624376 2625557 D COG2807 Cyanate permease; putative amino acid/amine transport protein 2624376..2625557 Escherichia coli APEC O78 14482525 YP_007381724.1 CDS APECO78_12755 NC_020163.1 2625612 2625959 D COG3189 Uncharacterized conserved protein; hypothetical protein 2625612..2625959 Escherichia coli APEC O78 14482526 YP_007381725.1 CDS APECO78_12760 NC_020163.1 2625981 2626235 R COG3042 Putative hemolysin; hemolysin complement(2625981..2626235) Escherichia coli APEC O78 14482527 YP_007381726.1 CDS APECO78_12765 NC_020163.1 2626418 2627443 D COG2199 FOG: GGDEF domain; putative diguanylate cyclase 2626418..2627443 Escherichia coli APEC O78 14482528 YP_007381727.1 CDS APECO78_12770 NC_020163.1 2627577 2627651 D hypothetical protein 2627577..2627651 Escherichia coli APEC O78 14482529 YP_007381728.1 CDS APECO78_12775 NC_020163.1 2627710 2627958 R COG2261 Predicted membrane protein; hypothetical protein complement(2627710..2627958) Escherichia coli APEC O78 14482530 YP_007381729.1 CDS APECO78_12780 NC_020163.1 2628106 2628288 R hypothetical protein complement(2628106..2628288) Escherichia coli APEC O78 14482531 YP_007381730.1 CDS APECO78_12785 NC_020163.1 2628292 2628651 R COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance; hypothetical protein complement(2628292..2628651) Escherichia coli APEC O78 14482532 YP_007381731.1 CDS APECO78_12790 NC_020163.1 2628824 2629462 R COG1280 Putative threonine efflux protein; leucine export protein LeuE complement(2628824..2629462) Escherichia coli APEC O78 14482533 YP_007381732.1 CDS APECO78_12795 NC_020163.1 2629589 2630512 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2629589..2630512) Escherichia coli APEC O78 14482534 YP_007381733.1 CDS APECO78_12800 NC_020163.1 2630615 2631700 D COG0473 Isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2630615..2631700 Escherichia coli APEC O78 14482535 YP_007381734.1 CDS APECO78_12805 NC_020163.1 2631951 2633561 D COG1292 Choline-glycine betaine transporter; transporter 2631951..2633561 Escherichia coli APEC O78 14482536 YP_007381735.1 CDS APECO78_12810 NC_020163.1 2633593 2634717 D COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit; dioxygenase subunit alpha yeaW 2633593..2634717 Escherichia coli APEC O78 14482537 YP_007381736.1 CDS APECO78_12815 NC_020163.1 2634773 2635738 D COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; oxidoreductase 2634773..2635738 Escherichia coli APEC O78 14482538 YP_007381737.1 CDS APECO78_12820 NC_020163.1 2635792 2636919 R COG0349 Ribonuclease D; ribonuclease D complement(2635792..2636919) Escherichia coli APEC O78 14482539 YP_007381738.1 CDS APECO78_12825 NC_020163.1 2636989 2638674 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; long-chain-fatty-acid--CoA ligase complement(2636989..2638674) Escherichia coli APEC O78 14482540 YP_007381739.1 CDS APECO78_12830 NC_020163.1 2638879 2639460 R COG3065 Starvation-inducible outer membrane lipoprotein; lipoprotein complement(2638879..2639460) Escherichia coli APEC O78 14482541 YP_007381740.1 CDS APECO78_12835 NC_020163.1 2639500 2640195 R COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; peptidase complement(2639500..2640195) Escherichia coli APEC O78 14482542 YP_007381741.1 CDS APECO78_12840 NC_020163.1 2640253 2642163 R COG1199 Rad3-related DNA helicases; Helicase c2 complement(2640253..2642163) Escherichia coli APEC O78 14482543 YP_007381742.1 CDS APECO78_12845 NC_020163.1 2642295 2642639 D COG0251 Putative translation initiation inhibitor, yjgF family; hypothetical protein 2642295..2642639 Escherichia coli APEC O78 14482544 YP_007381743.1 CDS APECO78_12850 NC_020163.1 2643002 2643361 D hypothetical protein 2643002..2643361 Escherichia coli APEC O78 14482545 YP_007381744.1 CDS APECO78_12855 NC_020163.1 2643481 2643660 R COG3140 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2643481..2643660) Escherichia coli APEC O78 14482546 YP_007381745.1 CDS APECO78_12860 NC_020163.1 2643734 2645095 D COG0147 Anthranilate/para-aminobenzoate synthases component I; aminodeoxychorismate synthase subunit I 2643734..2645095 Escherichia coli APEC O78 14482547 YP_007381746.1 CDS APECO78_12865 NC_020163.1 2645099 2645677 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase 2645099..2645677 Escherichia coli APEC O78 14482548 YP_007381747.1 CDS APECO78_12870 NC_020163.1 2645861 2647225 D COG1760 L-serine deaminase; L-serine deaminase 2645861..2647225 Escherichia coli APEC O78 14482549 YP_007381748.1 CDS APECO78_12875 NC_020163.1 2647356 2648954 D COG2200 FOG: EAL domain; phosphodiesterase 2647356..2648954 Escherichia coli APEC O78 14482550 YP_007381749.1 CDS APECO78_12880 NC_020163.1 2648958 2650508 R COG0861 Membrane protein TerC, possibly involved in tellurium resistance; putative transport protein complement(2648958..2650508) Escherichia coli APEC O78 14482551 YP_007381750.1 CDS APECO78_12885 NC_020163.1 2650971 2651942 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system mannose-specific transporter subunit IIAB 2650971..2651942 Escherichia coli APEC O78 14482552 YP_007381751.1 CDS APECO78_12890 NC_020163.1 2652005 2652805 D COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system mannose-specific transporter subunit IIC 2652005..2652805 Escherichia coli APEC O78 14482553 YP_007381752.1 CDS APECO78_12895 NC_020163.1 2652818 2653669 D COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system mannose-specific transporter subunit IID 2652818..2653669 Escherichia coli APEC O78 14482554 YP_007381753.1 CDS APECO78_12900 NC_020163.1 2653724 2654182 D COG4811 Predicted membrane protein; hypothetical protein 2653724..2654182 Escherichia coli APEC O78 14482555 YP_007381754.1 CDS APECO78_12905 NC_020163.1 2654611 2655177 D COG1971 Predicted membrane protein; hypothetical protein 2654611..2655177 Escherichia coli APEC O78 14482556 YP_007381755.1 CDS rrmA NC_020163.1 2655174 2655983 R COG0500 SAM-dependent methyltransferases; 23S rRNA methyltransferase A complement(2655174..2655983) Escherichia coli APEC O78 14482557 YP_007381756.1 CDS APECO78_12915 NC_020163.1 2656149 2656358 R COG1278 Cold shock proteins; Cold shock-like protein cspC complement(2656149..2656358) Escherichia coli APEC O78 14482558 YP_007381757.1 CDS APECO78_12920 NC_020163.1 2656371 2656514 R hypothetical protein complement(2656371..2656514) Escherichia coli APEC O78 14482559 YP_007381758.1 CDS APECO78_12925 NC_020163.1 2657183 2657470 R hypothetical protein complement(2657183..2657470) Escherichia coli APEC O78 14482560 YP_007381759.1 CDS APECO78_12930 NC_020163.1 2657545 2657688 R PhoPQ regulatory protein complement(2657545..2657688) Escherichia coli APEC O78 14482561 YP_007381760.1 CDS APECO78_12935 NC_020163.1 2657847 2658086 D hypothetical protein 2657847..2658086 Escherichia coli APEC O78 14482562 YP_007381761.1 CDS APECO78_12940 NC_020163.1 2658229 2659020 R COG1414 Transcriptional regulator; DNA-binding transcriptional regulator KdgR complement(2658229..2659020) Escherichia coli APEC O78 14482563 YP_007381762.1 CDS APECO78_12945 NC_020163.1 2659197 2660570 D COG0477 Permeases of the major facilitator superfamily; transporter 2659197..2660570 Escherichia coli APEC O78 14482564 YP_007381763.1 CDS APECO78_12950 NC_020163.1 2660616 2661497 R COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX complement(2660616..2661497) Escherichia coli APEC O78 14482565 YP_007381764.1 CDS APECO78_12955 NC_020163.1 2661689 2663737 R COG0793 Periplasmic protease; carboxy-terminal protease complement(2661689..2663737) Escherichia coli APEC O78 14482566 YP_007381765.1 CDS APECO78_12960 NC_020163.1 2663757 2664455 R COG3109 Activator of osmoprotectant transporter ProP; ProP expression regulator complement(2663757..2664455) Escherichia coli APEC O78 14482567 YP_007381766.1 CDS APECO78_12965 NC_020163.1 2664552 2665049 R COG1956 GAF domain-containing protein; hypothetical protein complement(2664552..2665049) Escherichia coli APEC O78 14482568 YP_007381767.1 CDS APECO78_12970 NC_020163.1 2665179 2666462 D COG2995 Uncharacterized paraquat-inducible protein A; hypothetical protein 2665179..2666462 Escherichia coli APEC O78 14482569 YP_007381768.1 CDS APECO78_12975 NC_020163.1 2666431 2669064 D COG3008 Paraquat-inducible protein B; hypothetical protein 2666431..2669064 Escherichia coli APEC O78 14482570 YP_007381769.1 CDS yebU NC_020163.1 2669144 2670583 D COG0144 tRNA and rRNA cytosine-C5-methylases; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2669144..2670583 Escherichia coli APEC O78 14482571 YP_007381770.1 CDS APECO78_12985 NC_020163.1 2670701 2670937 D hypothetical protein 2670701..2670937 Escherichia coli APEC O78 14482572 YP_007381771.1 CDS APECO78_12990 NC_020163.1 2671042 2671233 D hypothetical protein 2671042..2671233 Escherichia coli APEC O78 14482573 YP_007381772.1 CDS APECO78_12995 NC_020163.1 2671234 2671890 R COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine protein phosphatase 1 complement(2671234..2671890) Escherichia coli APEC O78 14482574 YP_007381773.1 CDS APECO78_13000 NC_020163.1 2672115 2672201 R hypothetical protein complement(2672115..2672201) Escherichia coli APEC O78 14482575 YP_007381774.1 CDS APECO78_13005 NC_020163.1 2672286 2672627 R hypothetical protein complement(2672286..2672627) Escherichia coli APEC O78 14482576 YP_007381775.1 CDS APECO78_13010 NC_020163.1 2672640 2673512 R COG1276 Putative copper export protein; copper resistance protein D complement(2672640..2673512) Escherichia coli APEC O78 14482577 YP_007381776.1 CDS APECO78_13015 NC_020163.1 2673516 2673890 R COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC; hypothetical protein complement(2673516..2673890) Escherichia coli APEC O78 14482578 YP_007381777.1 CDS APECO78_13020 NC_020163.1 2674029 2674259 D DNA polymerase III subunit theta 2674029..2674259 Escherichia coli APEC O78 14482579 YP_007381778.1 CDS APECO78_13025 NC_020163.1 2674361 2675017 D COG0388 Predicted amidohydrolase; carbon-nitrogen family hydrolase 2674361..2675017 Escherichia coli APEC O78 14482580 YP_007381779.1 CDS APECO78_13030 NC_020163.1 2675041 2675703 D COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; exodeoxyribonuclease X 2675041..2675703 Escherichia coli APEC O78 14482581 YP_007381780.1 CDS APECO78_13035 NC_020163.1 2675700 2677760 R COG1770 Protease II; protease 2 complement(2675700..2677760) Escherichia coli APEC O78 14482582 YP_007381781.1 CDS APECO78_13040 NC_020163.1 2677969 2678628 R COG2979 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2677969..2678628) Escherichia coli APEC O78 14482583 YP_007381782.1 CDS APECO78_13045 NC_020163.1 2678688 2678798 D hypothetical protein 2678688..2678798 Escherichia coli APEC O78 14482584 YP_007381783.1 CDS APECO78_13050 NC_020163.1 2678955 2679311 R hypothetical protein complement(2678955..2679311) Escherichia coli APEC O78 14482585 YP_007381784.1 CDS APECO78_13055 NC_020163.1 2679378 2679668 R COG3141 Uncharacterized protein conserved in bacteria; DNA damage-inducible protein YebG complement(2679378..2679668) Escherichia coli APEC O78 14482586 YP_007381785.1 CDS APECO78_13060 NC_020163.1 2679802 2680980 D COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase); phosphoribosylglycinamide formyltransferase 2 2679802..2680980 Escherichia coli APEC O78 14482587 YP_007381786.1 CDS APECO78_13065 NC_020163.1 2681036 2681677 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2681036..2681677) Escherichia coli APEC O78 14482588 YP_007381787.1 CDS APECO78_13070 NC_020163.1 2681714 2683525 R COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase complement(2681714..2683525) Escherichia coli APEC O78 14482589 YP_007381788.1 CDS APECO78_13075 NC_020163.1 2683760 2685235 R COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(2683760..2685235) Escherichia coli APEC O78 14482590 YP_007381789.1 CDS APECO78_13080 NC_020163.1 2685573 2686442 D COG1737 Transcriptional regulators; DNA-binding transcriptional regulator HexR 2685573..2686442 Escherichia coli APEC O78 14482591 YP_007381790.1 CDS APECO78_13085 NC_020163.1 2686570 2688012 D COG0469 Pyruvate kinase; pyruvate kinase 2686570..2688012 Escherichia coli APEC O78 14482592 YP_007381791.1 CDS APECO78_13090 NC_020163.1 2688143 2689114 R COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2688143..2689114) Escherichia coli APEC O78 14482593 YP_007381792.1 CDS APECO78_13095 NC_020163.1 2689234 2690556 R COG0739 Membrane proteins related to metalloendopeptidases; peptidase complement(2689234..2690556) Escherichia coli APEC O78 14482594 YP_007381793.1 CDS znuA NC_020163.1 2690572 2691504 R COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin; high-affinity zinc transporter periplasmic component complement(2690572..2691504) Escherichia coli APEC O78 14482595 YP_007381794.1 CDS znuC NC_020163.1 2691583 2692338 D COG1121 ABC-type Mn/Zn transport systems, ATPase component; high-affinity zinc transporter ATPase 2691583..2692338 Escherichia coli APEC O78 14482596 YP_007381795.1 CDS APECO78_13110 NC_020163.1 2692335 2693120 D COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; high-affinity zinc transporter membrane protein 2692335..2693120 Escherichia coli APEC O78 14482597 YP_007381796.1 CDS APECO78_13115 NC_020163.1 2693267 2694277 R COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB complement(2693267..2694277) Escherichia coli APEC O78 14482598 YP_007381797.1 CDS ruvA NC_020163.1 2694286 2694897 R COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA complement(2694286..2694897) Escherichia coli APEC O78 14482599 YP_007381798.1 CDS APECO78_13125 NC_020163.1 2695172 2695774 D hypothetical protein 2695172..2695774 Escherichia coli APEC O78 14482600 YP_007381799.1 CDS APECO78_13130 NC_020163.1 2695776 2696297 R COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase complement(2695776..2696297) Escherichia coli APEC O78 14482601 YP_007381800.1 CDS APECO78_13135 NC_020163.1 2696332 2697072 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(2696332..2697072) Escherichia coli APEC O78 14482602 YP_007381801.1 CDS nudB NC_020163.1 2697101 2697553 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dihydroneopterin triphosphate pyrophosphatase complement(2697101..2697553) Escherichia coli APEC O78 14482603 YP_007381802.1 CDS aspS NC_020163.1 2697671 2699443 R COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA ligase complement(2697671..2699443) Escherichia coli APEC O78 14482604 YP_007381803.1 CDS APECO78_13150 NC_020163.1 2699753 2700319 D COG1335 Amidases related to nicotinamidase; hydrolase 2699753..2700319 Escherichia coli APEC O78 14482605 YP_007381804.1 CDS APECO78_13155 NC_020163.1 2700316 2701134 D COG1801 Uncharacterized conserved protein; hypothetical protein 2700316..2701134 Escherichia coli APEC O78 14482606 YP_007381805.1 CDS APECO78_13160 NC_020163.1 2701187 2701582 D COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily; hypothetical protein 2701187..2701582 Escherichia coli APEC O78 14482607 YP_007381806.1 CDS APECO78_13165 NC_020163.1 2701623 2702366 D COG0500 SAM-dependent methyltransferases; tRNA cmo(5)U34 methyltransferase 2701623..2702366 Escherichia coli APEC O78 14482608 YP_007381807.1 CDS APECO78_13170 NC_020163.1 2702363 2703334 D COG0500 SAM-dependent methyltransferases; tRNA mo(5)U34 methyltransferase 2702363..2703334 Escherichia coli APEC O78 14482609 YP_007381808.1 CDS APECO78_13175 NC_020163.1 2703499 2705928 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; molybdopterin guanine dinucleotide-containing S/N-oxide reductase complement(2703499..2705928) Escherichia coli APEC O78 14482610 YP_007381809.1 CDS APECO78_13180 NC_020163.1 2705953 2707053 R COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; NapC/NirT cytochrome c domain protein complement(2705953..2707053) Escherichia coli APEC O78 14482611 YP_007381810.1 CDS APECO78_13185 NC_020163.1 2707441 2708187 R COG3142 Uncharacterized protein involved in copper resistance; copper homeostasis protein CutC complement(2707441..2708187) Escherichia coli APEC O78 14482612 YP_007381811.1 CDS APECO78_13190 NC_020163.1 2708201 2708767 R COG3102 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2708201..2708767) Escherichia coli APEC O78 14482613 YP_007381812.1 CDS argS NC_020163.1 2708983 2710716 D COG0018 Arginyl-tRNA synthetase; arginyl-tRNA ligase 2708983..2710716 Escherichia coli APEC O78 14482614 YP_007381813.1 CDS APECO78_13200 NC_020163.1 2710893 2711381 D COG3755 Uncharacterized protein conserved in bacteria; hypothetical protein 2710893..2711381 Escherichia coli APEC O78 14482615 YP_007381814.1 CDS APECO78_13205 NC_020163.1 2711501 2711893 R flagellar protein FlhE complement(2711501..2711893) Escherichia coli APEC O78 14482616 YP_007381815.1 CDS flhA NC_020163.1 2711893 2713971 R COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA complement(2711893..2713971) Escherichia coli APEC O78 14482617 YP_007381816.1 CDS flhB NC_020163.1 2713964 2715112 R COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB complement(2713964..2715112) Escherichia coli APEC O78 14482618 YP_007381817.1 CDS APECO78_13220 NC_020163.1 2715314 2715958 R COG3143 Chemotaxis protein; chemotaxis regulator CheZ complement(2715314..2715958) Escherichia coli APEC O78 14482619 YP_007381818.1 CDS APECO78_13225 NC_020163.1 2715969 2716358 R COG0784 FOG: CheY-like receiver; chemotaxis regulatory protein CheY complement(2715969..2716358) Escherichia coli APEC O78 14482620 YP_007381819.1 CDS APECO78_13230 NC_020163.1 2716373 2717422 R COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; chemotaxis-specific methylesterase complement(2716373..2717422) Escherichia coli APEC O78 14482621 YP_007381820.1 CDS APECO78_13235 NC_020163.1 2717425 2718285 R COG1352 Methylase of chemotaxis methyl-accepting proteins; chemotaxis methyltransferase CheR complement(2717425..2718285) Escherichia coli APEC O78 14482622 YP_007381821.1 CDS APECO78_13240 NC_020163.1 2718304 2719905 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting protein IV complement(2718304..2719905) Escherichia coli APEC O78 14482623 YP_007381822.1 CDS APECO78_13245 NC_020163.1 2719951 2721612 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein II complement(2719951..2721612) Escherichia coli APEC O78 14482624 YP_007381823.1 CDS APECO78_13250 NC_020163.1 2721757 2722260 R COG0835 Chemotaxis signal transduction protein; purine-binding chemotaxis protein complement(2721757..2722260) Escherichia coli APEC O78 14482625 YP_007381824.1 CDS APECO78_13255 NC_020163.1 2722281 2724245 R COG0643 Chemotaxis protein histidine kinase and related kinases; chemotaxis protein CheA complement(2722281..2724245) Escherichia coli APEC O78 14482626 YP_007381825.1 CDS APECO78_13260 NC_020163.1 2724250 2725176 R COG1360 Flagellar motor protein; flagellar motor protein MotB complement(2724250..2725176) Escherichia coli APEC O78 14482627 YP_007381826.1 CDS APECO78_13265 NC_020163.1 2725173 2726060 R COG1291 Flagellar motor component; flagellar motor protein MotA complement(2725173..2726060) Escherichia coli APEC O78 14482628 YP_007381827.1 CDS APECO78_13270 NC_020163.1 2726187 2726765 R transcriptional activator FlhC complement(2726187..2726765) Escherichia coli APEC O78 14482629 YP_007381828.1 CDS APECO78_13275 NC_020163.1 2726768 2727118 R transcriptional activator FlhD complement(2726768..2727118) Escherichia coli APEC O78 14482630 YP_007381829.1 CDS APECO78_13280 NC_020163.1 2727898 2728326 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein C 2727898..2728326 Escherichia coli APEC O78 14482631 YP_007381830.1 CDS APECO78_13285 NC_020163.1 2728333 2729757 R COG0380 Trehalose-6-phosphate synthase; trehalose-6-phosphate synthase complement(2728333..2729757) Escherichia coli APEC O78 14482632 YP_007381831.1 CDS APECO78_13290 NC_020163.1 2729732 2730532 R COG1877 Trehalose-6-phosphatase; trehalose-6-phosphate phosphatase complement(2729732..2730532) Escherichia coli APEC O78 14482633 YP_007381832.1 CDS araH NC_020163.1 2730699 2731685 R COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; L-arabinose transporter permease protein complement(2730699..2731685) Escherichia coli APEC O78 14482634 YP_007381833.1 CDS araG NC_020163.1 2731700 2733214 R COG1129 ABC-type sugar transport system, ATPase component; L-arabinose transporter ATP-binding protein complement(2731700..2733214) Escherichia coli APEC O78 14482635 YP_007381834.1 CDS APECO78_13305 NC_020163.1 2733284 2734273 R COG1879 ABC-type sugar transport system, periplasmic component; L-arabinose ABC transporter substrate binding component complement(2733284..2734273) Escherichia coli APEC O78 14482636 YP_007381835.1 CDS APECO78_13310 NC_020163.1 2735070 2735573 D COG1528 Ferritin-like protein; ferritin-like protein 2735070..2735573 Escherichia coli APEC O78 14482637 YP_007381836.1 CDS APECO78_13315 NC_020163.1 2735652 2735903 R hypothetical protein complement(2735652..2735903) Escherichia coli APEC O78 14482638 YP_007381837.1 CDS APECO78_13320 NC_020163.1 2736861 2737358 D COG1528 Ferritin-like protein; ferritin 2736861..2737358 Escherichia coli APEC O78 14482639 YP_007381838.1 CDS APECO78_13325 NC_020163.1 2737396 2737635 R hypothetical protein complement(2737396..2737635) Escherichia coli APEC O78 14482640 YP_007381839.1 CDS APECO78_13330 NC_020163.1 2737826 2739037 D COG0814 Amino acid permeases; tyrosine transporter TyrP 2737826..2739037 Escherichia coli APEC O78 14482641 YP_007381840.1 CDS APECO78_13335 NC_020163.1 2739099 2739764 R COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; hypothetical protein complement(2739099..2739764) Escherichia coli APEC O78 14482642 YP_007381841.1 CDS APECO78_13340 NC_020163.1 2740414 2740962 R COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthetase complement(2740414..2740962) Escherichia coli APEC O78 14484623 YP_007381842.1 CDS uvrC NC_020163.1 2741019 2742851 R COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C complement(2741019..2742851) Escherichia coli APEC O78 14482644 YP_007381843.1 CDS APECO78_13350 NC_020163.1 2742848 2743504 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; response regulator complement(2742848..2743504) Escherichia coli APEC O78 14482645 YP_007381844.1 CDS APECO78_13355 NC_020163.1 2743800 2743976 D hypothetical protein 2743800..2743976 Escherichia coli APEC O78 14482646 YP_007381845.1 CDS APECO78_13360 NC_020163.1 2743963 2744187 D hypothetical protein 2743963..2744187 Escherichia coli APEC O78 14482647 YP_007381846.1 CDS APECO78_13365 NC_020163.1 2744255 2744977 R COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional activator SdiA complement(2744255..2744977) Escherichia coli APEC O78 14482648 YP_007381847.1 CDS APECO78_13370 NC_020163.1 2745207 2745959 R COG1126 ABC-type polar amino acid transport system, ATPase component; amino-acid ABC transporter ATP-binding protein YecC complement(2745207..2745959) Escherichia coli APEC O78 14482649 YP_007381848.1 CDS APECO78_13375 NC_020163.1 2745956 2746624 R COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease complement(2745956..2746624) Escherichia coli APEC O78 14482650 YP_007381849.1 CDS APECO78_13380 NC_020163.1 2746639 2747625 R COG2515 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase complement(2746639..2747625) Escherichia coli APEC O78 14482651 YP_007381850.1 CDS APECO78_13385 NC_020163.1 2747730 2748530 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; cystine transporter subunit complement(2747730..2748530) Escherichia coli APEC O78 14482652 YP_007381851.1 CDS APECO78_13390 NC_020163.1 2748618 2749169 R flagella biosynthesis protein FliZ complement(2748618..2749169) Escherichia coli APEC O78 14482653 YP_007381852.1 CDS fliA NC_020163.1 2749215 2749934 R COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor complement(2749215..2749934) Escherichia coli APEC O78 14482654 YP_007381853.1 CDS APECO78_13400 NC_020163.1 2750099 2750206 R hypothetical protein complement(2750099..2750206) Escherichia coli APEC O78 14482655 YP_007381854.1 CDS APECO78_13405 NC_020163.1 2750255 2752267 R COG1344 Flagellin and related hook-associated proteins; flagellin complement(2750255..2752267) Escherichia coli APEC O78 14482656 YP_007381855.1 CDS fliD NC_020163.1 2752533 2753939 D COG1345 Flagellar capping protein; flagellar capping protein 2752533..2753939 Escherichia coli APEC O78 14482657 YP_007381856.1 CDS fliS NC_020163.1 2753964 2754374 D COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 2753964..2754374 Escherichia coli APEC O78 14482658 YP_007381857.1 CDS APECO78_13420 NC_020163.1 2754374 2754739 D COG1012 NAD-dependent aldehyde dehydrogenases; flagellar biosynthesis protein FliT 2754374..2754739 Escherichia coli APEC O78 14482659 YP_007381858.1 CDS APECO78_13425 NC_020163.1 2754817 2756304 D COG0366 Glycosidases; cytoplasmic alpha-amylase 2754817..2756304 Escherichia coli APEC O78 14482660 YP_007381859.1 CDS APECO78_13430 NC_020163.1 2756338 2756751 R lipoprotein complement(2756338..2756751) Escherichia coli APEC O78 14482661 YP_007381860.1 CDS APECO78_13435 NC_020163.1 2756938 2758143 D COG2391 Predicted transporter component; hypothetical protein 2756938..2758143 Escherichia coli APEC O78 14482662 YP_007381861.1 CDS APECO78_13440 NC_020163.1 2758140 2758373 D COG0425 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein 2758140..2758373 Escherichia coli APEC O78 14482663 YP_007381862.1 CDS APECO78_13445 NC_020163.1 2758482 2759153 D COG2135 Uncharacterized conserved protein; hypothetical protein 2758482..2759153 Escherichia coli APEC O78 14482664 YP_007381863.1 CDS APECO78_13450 NC_020163.1 2759138 2760241 R COG0675 Transposase and inactivated derivatives; putative transposase complement(2759138..2760241) Escherichia coli APEC O78 14482665 YP_007381864.1 CDS APECO78_13455 NC_020163.1 2760372 2760596 D COG1943 Transposase and inactivated derivatives; putative IS609 transposase TnpA 2760372..2760596 Escherichia coli APEC O78 14482666 YP_007381865.1 CDS APECO78_13460 NC_020163.1 2761690 2762487 R COG2207 AraC-type DNA-binding domain-containing proteins; putative ARAC-type regulatory protein complement(2761690..2762487) Escherichia coli APEC O78 14482667 YP_007381866.1 CDS APECO78_13465 NC_020163.1 2762497 2763048 R COG1881 Phospholipid-binding protein; kinase inhibitor complement(2762497..2763048) Escherichia coli APEC O78 14482668 YP_007381867.1 CDS APECO78_13470 NC_020163.1 2763626 2763805 D hypothetical protein 2763626..2763805 Escherichia coli APEC O78 14482669 YP_007381868.1 CDS fliE NC_020163.1 2763883 2764197 R COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE complement(2763883..2764197) Escherichia coli APEC O78 14482670 YP_007381869.1 CDS fliF NC_020163.1 2764412 2766070 D COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 2764412..2766070 Escherichia coli APEC O78 14482671 YP_007381870.1 CDS fliG NC_020163.1 2766063 2767058 D COG1536 Flagellar motor switch protein; flagellar motor switch protein G 2766063..2767058 Escherichia coli APEC O78 14482672 YP_007381871.1 CDS fliH NC_020163.1 2767051 2767737 D COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 2767051..2767737 Escherichia coli APEC O78 14482673 YP_007381872.1 CDS fliI NC_020163.1 2767737 2769110 D COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase 2767737..2769110 Escherichia coli APEC O78 14482674 YP_007381873.1 CDS fliJ NC_020163.1 2769129 2769572 D COG2882 Flagellar biosynthesis chaperone; flagellar biosynthesis chaperone 2769129..2769572 Escherichia coli APEC O78 14482675 YP_007381874.1 CDS APECO78_13505 NC_020163.1 2769569 2770696 D COG3144 Flagellar hook-length control protein; flagellar hook-length control protein 2769569..2770696 Escherichia coli APEC O78 14482676 YP_007381875.1 CDS fliL NC_020163.1 2770801 2771265 D COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL 2770801..2771265 Escherichia coli APEC O78 14482677 YP_007381876.1 CDS fliM NC_020163.1 2771270 2772274 D COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 2771270..2772274 Escherichia coli APEC O78 14482678 YP_007381877.1 CDS fliN NC_020163.1 2772271 2772684 D COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein FliN 2772271..2772684 Escherichia coli APEC O78 14482679 YP_007381878.1 CDS APECO78_13525 NC_020163.1 2772687 2773052 D flagellar biosynthesis protein FliO 2772687..2773052 Escherichia coli APEC O78 14482680 YP_007381879.1 CDS fliP NC_020163.1 2773052 2773789 D COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 2773052..2773789 Escherichia coli APEC O78 14482681 YP_007381880.1 CDS fliQ NC_020163.1 2773799 2774068 D COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ 2773799..2774068 Escherichia coli APEC O78 14482682 YP_007381881.1 CDS fliR NC_020163.1 2774076 2774861 D COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR 2774076..2774861 Escherichia coli APEC O78 14482683 YP_007381882.1 CDS rcsA NC_020163.1 2775151 2775774 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; colanic acid capsular biosynthesis activation protein A 2775151..2775774 Escherichia coli APEC O78 14482684 YP_007381883.1 CDS APECO78_13550 NC_020163.1 2775818 2776006 R hypothetical protein complement(2775818..2776006) Escherichia coli APEC O78 14482685 YP_007381884.1 CDS APECO78_13555 NC_020163.1 2776169 2776396 D hypothetical protein 2776169..2776396 Escherichia coli APEC O78 14482686 YP_007381885.1 CDS APECO78_13560 NC_020163.1 2776694 2777512 D COG3769 Predicted hydrolase (HAD superfamily); mannosyl-3-phosphoglycerate phosphatase 2776694..2777512 Escherichia coli APEC O78 14482687 YP_007381886.1 CDS APECO78_13565 NC_020163.1 2777509 2779203 R COG2199 FOG: GGDEF domain; diguanylate cyclase YedQ complement(2777509..2779203) Escherichia coli APEC O78 14482688 YP_007381887.1 CDS APECO78_13570 NC_020163.1 2779374 2779556 R COG5475 Uncharacterized small protein; hypothetical protein complement(2779374..2779556) Escherichia coli APEC O78 14482689 YP_007381888.1 CDS APECO78_13575 NC_020163.1 2779635 2780552 R COG2354 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2779635..2780552) Escherichia coli APEC O78 14482690 YP_007381889.1 CDS APECO78_13580 NC_020163.1 2780725 2781645 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; DMT superfamily transporter inner membrane protein 2780725..2781645 Escherichia coli APEC O78 14482691 YP_007381890.1 CDS APECO78_13585 NC_020163.1 2781634 2782104 R COG3727 DNA G:T-mismatch repair endonuclease; very short patch repair endonuclease complement(2781634..2782104) Escherichia coli APEC O78 14482692 YP_007381891.1 CDS APECO78_13590 NC_020163.1 2782085 2783503 R COG0270 Site-specific DNA methylase; DNA cytosine methylase complement(2782085..2783503) Escherichia coli APEC O78 14482693 YP_007381892.1 CDS APECO78_13595 NC_020163.1 2783570 2784265 R COG1418 Predicted HD superfamily hydrolase; hydrolase complement(2783570..2784265) Escherichia coli APEC O78 14482694 YP_007381893.1 CDS APECO78_13600 NC_020163.1 2784305 2784670 R COG0477 Permeases of the major facilitator superfamily; hypothetical protein complement(2784305..2784670) Escherichia coli APEC O78 14482695 YP_007381894.1 CDS APECO78_13605 NC_020163.1 2785237 2786295 D COG3203 Outer membrane protein (porin); hypothetical protein 2785237..2786295 Escherichia coli APEC O78 14482696 YP_007381895.1 CDS APECO78_13610 NC_020163.1 2786296 2786463 R hypothetical protein complement(2786296..2786463) Escherichia coli APEC O78 14482697 YP_007381896.1 CDS APECO78_13615 NC_020163.1 2786887 2787738 D COG0693 Putative intracellular protease/amidase; chaperone protein HchA 2786887..2787738 Escherichia coli APEC O78 14482698 YP_007381897.1 CDS APECO78_13620 NC_020163.1 2787846 2789204 R COG0642 Signal transduction histidine kinase; two-component sensor kinase complement(2787846..2789204) Escherichia coli APEC O78 14482699 YP_007381898.1 CDS APECO78_13625 NC_020163.1 2789204 2789875 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulatory protein YedW complement(2789204..2789875) Escherichia coli APEC O78 14482700 YP_007381899.1 CDS APECO78_13630 NC_020163.1 2790008 2790421 D COG2351 Transthyretin-like protein; hydroxyisourate hydrolase 2790008..2790421 Escherichia coli APEC O78 14482701 YP_007381900.1 CDS APECO78_13635 NC_020163.1 2790530 2791534 D COG2041 Sulfite oxidase and related enzymes; TMAO/DMSO reductase 2790530..2791534 Escherichia coli APEC O78 14482702 YP_007381901.1 CDS APECO78_13640 NC_020163.1 2791535 2792170 D COG2717 Predicted membrane protein; sulfite oxidase subunit YedZ 2791535..2792170 Escherichia coli APEC O78 14482703 YP_007381902.1 CDS APECO78_13645 NC_020163.1 2792427 2793077 D COG3443 Predicted periplasmic or secreted protein; hypothetical protein 2792427..2793077 Escherichia coli APEC O78 14482704 YP_007381903.1 CDS APECO78_13650 NC_020163.1 2793420 2793950 D COG3038 Cytochrome B561; cytochrome 2793420..2793950 Escherichia coli APEC O78 14482705 YP_007381904.1 CDS APECO78_13655 NC_020163.1 2796258 2797055 D COG3228 Uncharacterized protein conserved in bacteria; DgsA anti-repressor MtfA 2796258..2797055 Escherichia coli APEC O78 14484624 YP_007381905.1 CDS APECO78_13670 NC_020163.1 2800050 2800934 R hypothetical protein complement(2800050..2800934) Escherichia coli APEC O78 14484625 YP_007381906.1 CDS APECO78_13675 NC_020163.1 2801876 2802025 R COG3423 Predicted transcriptional regulator; transcriptional regulator Nlp complement(2801876..2802025) Escherichia coli APEC O78 14482708 YP_007381907.1 CDS APECO78_13680 NC_020163.1 2802022 2802483 R hypothetical protein complement(2802022..2802483) Escherichia coli APEC O78 14482709 YP_007381908.1 CDS APECO78_13685 NC_020163.1 2803002 2804348 D COG3209 Rhs family protein; YD repeat-containing protein 2803002..2804348 Escherichia coli APEC O78 14482710 YP_007381909.1 CDS APECO78_13690 NC_020163.1 2804342 2807191 D COG3209 Rhs family protein; YD repeat-containing protein 2804342..2807191 Escherichia coli APEC O78 14482711 YP_007381910.1 CDS APECO78_13695 NC_020163.1 2807179 2807571 D hypothetical protein 2807179..2807571 Escherichia coli APEC O78 14482712 YP_007381911.1 CDS APECO78_13700 NC_020163.1 2808334 2809893 D hypothetical protein 2808334..2809893 Escherichia coli APEC O78 14482713 YP_007381912.1 CDS APECO78_13705 NC_020163.1 2809844 2816197 D hypothetical protein 2809844..2816197 Escherichia coli APEC O78 14482714 YP_007381913.1 CDS APECO78_13710 NC_020163.1 2816459 2817511 R COG0859 ADP-heptose:LPS heptosyltransferase; hypothetical protein complement(2816459..2817511) Escherichia coli APEC O78 14482715 YP_007381914.1 CDS APECO78_13715 NC_020163.1 2817826 2819142 D COG0477 Permeases of the major facilitator superfamily; shikimate transporter 2817826..2819142 Escherichia coli APEC O78 14482716 YP_007381915.1 CDS APECO78_13720 NC_020163.1 2819244 2820698 D COG0775 Nucleoside phosphorylase; AMP nucleosidase 2819244..2820698 Escherichia coli APEC O78 14482717 YP_007381916.1 CDS APECO78_13725 NC_020163.1 2821041 2821757 D COG0217 Uncharacterized conserved protein; hypothetical protein 2821041..2821757 Escherichia coli APEC O78 14482718 YP_007381917.1 CDS APECO78_13730 NC_020163.1 2822392 2824032 R COG0534 Na+-driven multidrug efflux pump; MATE family multidrug exporter complement(2822392..2824032) Escherichia coli APEC O78 14484626 YP_007381918.1 CDS cbl NC_020163.1 2824153 2825103 R COG0583 Transcriptional regulator; transcriptional regulator Cbl complement(2824153..2825103) Escherichia coli APEC O78 14484627 YP_007381919.1 CDS APECO78_13740 NC_020163.1 2825205 2826122 R COG0583 Transcriptional regulator; nitrogen assimilation transcriptional regulator complement(2825205..2826122) Escherichia coli APEC O78 14482721 YP_007381920.1 CDS APECO78_13745 NC_020163.1 2826580 2827512 R COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase complement(2826580..2827512) Escherichia coli APEC O78 14484628 YP_007381921.1 CDS cobT NC_020163.1 2827577 2828656 R COG2038 NaMN:DMB phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2827577..2828656) Escherichia coli APEC O78 14482723 YP_007381922.1 CDS cobS NC_020163.1 2828668 2829411 R COG0368 Cobalamin-5-phosphate synthase; cobalamin synthase complement(2828668..2829411) Escherichia coli APEC O78 14482724 YP_007381923.1 CDS cobU NC_020163.1 2829408 2829953 R COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(2829408..2829953) Escherichia coli APEC O78 14482725 YP_007381924.1 CDS APECO78_13765 NC_020163.1 2830177 2830311 D putative propanediol utilization protein 2830177..2830311 Escherichia coli APEC O78 14482726 YP_007381925.1 CDS APECO78_13770 NC_020163.1 2830412 2830741 R COG2926 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2830412..2830741) Escherichia coli APEC O78 14482727 YP_007381926.1 CDS APECO78_13775 NC_020163.1 2830913 2831971 R COG1289 Predicted membrane protein; inner membrane protein YeeA complement(2830913..2831971) Escherichia coli APEC O78 14482728 YP_007381927.1 CDS APECO78_13780 NC_020163.1 2832170 2832643 R COG3449 DNA gyrase inhibitor; DNA gyrase inhibitor complement(2832170..2832643) Escherichia coli APEC O78 14482729 YP_007381928.1 CDS dacD NC_020163.1 2832762 2833928 R COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase complement(2832762..2833928) Escherichia coli APEC O78 14482730 YP_007381929.1 CDS sbcB NC_020163.1 2834140 2835564 D COG2925 Exonuclease I; exonuclease I 2834140..2835564 Escherichia coli APEC O78 14482731 YP_007381930.1 CDS APECO78_13795 NC_020163.1 2835607 2835834 R COG0425 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein complement(2835607..2835834) Escherichia coli APEC O78 14482732 YP_007381931.1 CDS APECO78_13800 NC_020163.1 2835848 2836906 R COG2391 Predicted transporter component; putative inner membrane protein complement(2835848..2836906) Escherichia coli APEC O78 14482733 YP_007381932.1 CDS APECO78_13805 NC_020163.1 2837084 2838442 R COG0531 Amino acid transporters; amino acid permease complement(2837084..2838442) Escherichia coli APEC O78 14482734 YP_007381933.1 CDS APECO78_13810 NC_020163.1 2838709 2839638 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(2838709..2839638) Escherichia coli APEC O78 14482735 YP_007381934.1 CDS APECO78_13815 NC_020163.1 2839684 2840508 R COG0451 Nucleoside-diphosphate-sugar epimerases; epimerase, with NAD(P)-binding Rossmann-fold domain complement(2839684..2840508) Escherichia coli APEC O78 14482736 YP_007381935.1 CDS APECO78_13820 NC_020163.1 2840591 2840845 R COG4115 Uncharacterized protein conserved in bacteria; Toxin yoeB complement(2840591..2840845) Escherichia coli APEC O78 14482737 YP_007381936.1 CDS APECO78_13825 NC_020163.1 2840842 2841093 R COG2161 Antitoxin of toxin-antitoxin stability system; antitoxin YefM complement(2840842..2841093) Escherichia coli APEC O78 14482738 YP_007381937.1 CDS hisG NC_020163.1 2841573 2842472 D COG0040 ATP phosphoribosyltransferase; ATP phosphoribosyltransferase 2841573..2842472 Escherichia coli APEC O78 14482739 YP_007381938.1 CDS hisD NC_020163.1 2842478 2843782 D COG0141 Histidinol dehydrogenase; bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 2842478..2843782 Escherichia coli APEC O78 14482740 YP_007381939.1 CDS APECO78_13840 NC_020163.1 2843779 2844849 D COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; histidinol-phosphate aminotransferase 2843779..2844849 Escherichia coli APEC O78 14482741 YP_007381940.1 CDS APECO78_13845 NC_020163.1 2844849 2845916 D COG0241 Histidinol phosphatase and related phosphatases; includes histidinol-phosphatase; imidazoleglycerol-phosphat dehydratase; histidine biosynthesis bifunctional protein 2844849..2845916 Escherichia coli APEC O78 14482742 YP_007381941.1 CDS hisH NC_020163.1 2845916 2846506 D COG0118 Glutamine amidotransferase; imidazole glycerol phosphate synthase subunit HisH 2845916..2846506 Escherichia coli APEC O78 14482743 YP_007381942.1 CDS APECO78_13855 NC_020163.1 2846506 2847243 D COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino imidazole-4-carboxamide isomerase] 2846506..2847243 Escherichia coli APEC O78 14482744 YP_007381943.1 CDS APECO78_13860 NC_020163.1 2847225 2848001 D COG0107 Imidazoleglycerol-phosphate synthase; imidazole glycerol phosphate synthase subunit HisF 2847225..2848001 Escherichia coli APEC O78 14482745 YP_007381944.1 CDS APECO78_13865 NC_020163.1 2847995 2848606 D COG0139 Phosphoribosyl-AMP cyclohydrolase; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 2847995..2848606 Escherichia coli APEC O78 14482746 YP_007381945.1 CDS APECO78_13870 NC_020163.1 2848703 2849680 R COG3765 Chain length determinant protein; chain length determinant protein WzzB complement(2848703..2849680) Escherichia coli APEC O78 14482747 YP_007381946.1 CDS APECO78_13875 NC_020163.1 2849826 2850992 R COG1004 Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase complement(2849826..2850992) Escherichia coli APEC O78 14482748 YP_007381947.1 CDS APECO78_13880 NC_020163.1 2851241 2852647 R COG0362 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase complement(2851241..2852647) Escherichia coli APEC O78 14482749 YP_007381948.1 CDS APECO78_13885 NC_020163.1 2852710 2854125 R putative polysaccharide biosynthesis protein complement(2852710..2854125) Escherichia coli APEC O78 14482750 YP_007381949.1 CDS APECO78_13890 NC_020163.1 2854122 2854856 R COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); putative capsular polysaccharide complement(2854122..2854856) Escherichia coli APEC O78 14482751 YP_007381950.1 CDS APECO78_13895 NC_020163.1 2854853 2856475 R capsular polysaccharide complement(2854853..2856475) Escherichia coli APEC O78 14482752 YP_007381951.1 CDS APECO78_13900 NC_020163.1 2856472 2856849 R putative capsule biosynthesis phosphatase complement(2856472..2856849) Escherichia coli APEC O78 14482753 YP_007381952.1 CDS APECO78_13905 NC_020163.1 2856852 2857973 R polymerase complement(2856852..2857973) Escherichia coli APEC O78 14482754 YP_007381953.1 CDS APECO78_13910 NC_020163.1 2857975 2859096 R COG0438 Glycosyltransferase; putative UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(2857975..2859096) Escherichia coli APEC O78 14482755 YP_007381954.1 CDS APECO78_13915 NC_020163.1 2859093 2860052 R hypothetical protein complement(2859093..2860052) Escherichia coli APEC O78 14482756 YP_007381955.1 CDS APECO78_13920 NC_020163.1 2860039 2861475 R COG1109 Phosphomannomutase; phosphomannomutase CpsG complement(2860039..2861475) Escherichia coli APEC O78 14482757 YP_007381956.1 CDS cpsB NC_020163.1 2861497 2862921 R COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanyltransferase complement(2861497..2862921) Escherichia coli APEC O78 14482758 YP_007381957.1 CDS APECO78_13930 NC_020163.1 2862918 2864027 R COG0438 Glycosyltransferase; putative glycosyl transferase complement(2862918..2864027) Escherichia coli APEC O78 14482759 YP_007381958.1 CDS APECO78_13935 NC_020163.1 2864048 2865190 R COG0438 Glycosyltransferase; hypothetical protein complement(2864048..2865190) Escherichia coli APEC O78 14482760 YP_007381959.1 CDS APECO78_13940 NC_020163.1 2865548 2866441 R COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase complement(2865548..2866441) Escherichia coli APEC O78 14482761 YP_007381960.1 CDS wcaM NC_020163.1 2866616 2868010 R colanic acid biosynthesis protein complement(2866616..2868010) Escherichia coli APEC O78 14482762 YP_007381961.1 CDS APECO78_13950 NC_020163.1 2868021 2869241 R COG0438 Glycosyltransferase; colanic acid biosynthesis glycosyltransferase WcaL complement(2868021..2869241) Escherichia coli APEC O78 14482763 YP_007381962.1 CDS APECO78_13955 NC_020163.1 2869238 2870518 R COG2327 Uncharacterized conserved protein; colanic acid biosynthesis protein complement(2869238..2870518) Escherichia coli APEC O78 14482764 YP_007381963.1 CDS APECO78_13960 NC_020163.1 2871084 2872562 R COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; colanic acid exporter complement(2871084..2872562) Escherichia coli APEC O78 14482765 YP_007381964.1 CDS APECO78_13965 NC_020163.1 2872564 2873958 R COG2148 Sugar transferases involved in lipopolysaccharide synthesis; UDP-glucose lipid carrier transferase complement(2872564..2873958) Escherichia coli APEC O78 14482766 YP_007381965.1 CDS APECO78_13970 NC_020163.1 2874013 2875383 R COG1109 Phosphomannomutase; phosphomannomutase CpsG complement(2874013..2875383) Escherichia coli APEC O78 14482767 YP_007381966.1 CDS cpsB NC_020163.1 2875576 2877012 R COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanyltransferase complement(2875576..2877012) Escherichia coli APEC O78 14482768 YP_007381967.1 CDS APECO78_13980 NC_020163.1 2877015 2878238 R COG0438 Glycosyltransferase; glycosyl transferase complement(2877015..2878238) Escherichia coli APEC O78 14482769 YP_007381968.1 CDS APECO78_13985 NC_020163.1 2878235 2878714 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; GDP-mannose mannosyl hydrolase NudD complement(2878235..2878714) Escherichia coli APEC O78 14482770 YP_007381969.1 CDS APECO78_13990 NC_020163.1 2878717 2879682 R COG0451 Nucleoside-diphosphate-sugar epimerases; GDP-fucose synthetase complement(2878717..2879682) Escherichia coli APEC O78 14482771 YP_007381970.1 CDS APECO78_13995 NC_020163.1 2879685 2880806 R COG1089 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase complement(2879685..2880806) Escherichia coli APEC O78 14482772 YP_007381971.1 CDS APECO78_14000 NC_020163.1 2880832 2881380 R COG0110 Acetyltransferase (isoleucine patch superfamily); acyl transferase complement(2880832..2881380) Escherichia coli APEC O78 14482773 YP_007381972.1 CDS APECO78_14005 NC_020163.1 2881396 2882142 R COG0463 Glycosyltransferases involved in cell wall biogenesis; colanic acid biosynthesis glycosyl transferase complement(2881396..2882142) Escherichia coli APEC O78 14482774 YP_007381973.1 CDS APECO78_14010 NC_020163.1 2882153 2883370 R putative colanic acid biosynthesis protein complement(2882153..2883370) Escherichia coli APEC O78 14482775 YP_007381974.1 CDS APECO78_14015 NC_020163.1 2883345 2884562 R COG0438 Glycosyltransferase; glycosyl transferase complement(2883345..2884562) Escherichia coli APEC O78 14482776 YP_007381975.1 CDS APECO78_14020 NC_020163.1 2884559 2885047 R COG1045 Serine acetyltransferase; putative colanic acid biosynthesis acetyltransferase WcaB complement(2884559..2885047) Escherichia coli APEC O78 14482777 YP_007381976.1 CDS APECO78_14025 NC_020163.1 2885050 2885889 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase complement(2885050..2885889) Escherichia coli APEC O78 14482778 YP_007381977.1 CDS APECO78_14030 NC_020163.1 2886067 2888229 R COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; tyrosine kinase complement(2886067..2888229) Escherichia coli APEC O78 14482779 YP_007381978.1 CDS APECO78_14035 NC_020163.1 2888232 2888675 R COG0394 Protein-tyrosine-phosphatase; tyrosine phosphatase complement(2888232..2888675) Escherichia coli APEC O78 14482780 YP_007381979.1 CDS APECO78_14040 NC_020163.1 2888681 2889820 R COG1596 Periplasmic protein involved in polysaccharide export; polysaccharide export protein Wza complement(2888681..2889820) Escherichia coli APEC O78 14482781 YP_007381980.1 CDS APECO78_14045 NC_020163.1 2890479 2892062 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; putative transport protein 2890479..2892062 Escherichia coli APEC O78 14482782 YP_007381981.1 CDS APECO78_14050 NC_020163.1 2892336 2894189 R COG2982 Uncharacterized protein involved in outer membrane biogenesis; assembly protein complement(2892336..2894189) Escherichia coli APEC O78 14482783 YP_007381982.1 CDS dcd NC_020163.1 2894211 2894792 R COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase complement(2894211..2894792) Escherichia coli APEC O78 14482784 YP_007381983.1 CDS APECO78_14060 NC_020163.1 2894884 2895525 R COG0572 Uridine kinase; Uridine/cytidine kinase complement(2894884..2895525) Escherichia coli APEC O78 14482785 YP_007381984.1 CDS APECO78_14065 NC_020163.1 2895843 2899160 D COG2202 FOG: PAS/PAC domain; diguanylate cyclase 2895843..2899160 Escherichia coli APEC O78 14482786 YP_007381985.1 CDS APECO78_14070 NC_020163.1 2899199 2900056 R COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; 3-methyl-adenine DNA glycosylase II complement(2899199..2900056) Escherichia coli APEC O78 14482787 YP_007381986.1 CDS APECO78_14075 NC_020163.1 2900190 2901542 D COG0443 Molecular chaperone; chaperone 2900190..2901542 Escherichia coli APEC O78 14482788 YP_007381987.1 CDS APECO78_14080 NC_020163.1 2901554 2903500 R COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains; hypothetical protein complement(2901554..2903500) Escherichia coli APEC O78 14482789 YP_007381988.1 CDS APECO78_14085 NC_020163.1 2903698 2904159 D COG3779 Uncharacterized protein conserved in bacteria; hypothetical protein 2903698..2904159 Escherichia coli APEC O78 14482790 YP_007381989.1 CDS APECO78_14090 NC_020163.1 2904224 2904985 R hypothetical protein complement(2904224..2904985) Escherichia coli APEC O78 14482791 YP_007381990.1 CDS APECO78_14095 NC_020163.1 2904982 2905641 R COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain; von Willebrand factor type A complement(2904982..2905641) Escherichia coli APEC O78 14482792 YP_007381991.1 CDS APECO78_14100 NC_020163.1 2906857 2908104 D COG0845 Membrane-fusion protein; multidrug efflux system subunit MdtA 2906857..2908104 Escherichia coli APEC O78 14482793 YP_007381992.1 CDS APECO78_14105 NC_020163.1 2908104 2911226 D COG0841 Cation/multidrug efflux pump; multidrug efflux system subunit MdtB 2908104..2911226 Escherichia coli APEC O78 14482794 YP_007381993.1 CDS APECO78_14110 NC_020163.1 2911227 2914304 D COG0841 Cation/multidrug efflux pump; multidrug efflux system, subunit C 2911227..2914304 Escherichia coli APEC O78 14482795 YP_007381994.1 CDS APECO78_14115 NC_020163.1 2914305 2915720 D COG0477 Permeases of the major facilitator superfamily; transporter 2914305..2915720 Escherichia coli APEC O78 14482796 YP_007381995.1 CDS APECO78_14120 NC_020163.1 2915717 2917120 D COG0642 Signal transduction histidine kinase; signal transduction histidine-protein kinase BaeS 2915717..2917120 Escherichia coli APEC O78 14482797 YP_007381996.1 CDS APECO78_14125 NC_020163.1 2917117 2917839 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator BaeR 2917117..2917839 Escherichia coli APEC O78 14482798 YP_007381997.1 CDS APECO78_14130 NC_020163.1 2918030 2918362 D COG3422 Uncharacterized conserved protein; hypothetical protein 2918030..2918362 Escherichia coli APEC O78 14482799 YP_007381998.1 CDS APECO78_14135 NC_020163.1 2918571 2918867 D COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; transcriptional regulator 2918571..2918867 Escherichia coli APEC O78 14482800 YP_007381999.1 CDS APECO78_14140 NC_020163.1 2918869 2919165 D COG3668 Plasmid stabilization system protein; plasmid stabilization system protein 2918869..2919165 Escherichia coli APEC O78 14482801 YP_007382000.1 CDS APECO78_14145 NC_020163.1 2919268 2920629 D COG0826 Collagenase and related proteases; protease 2919268..2920629 Escherichia coli APEC O78 14482802 YP_007382001.1 CDS APECO78_14150 NC_020163.1 2920960 2921277 R hypothetical protein complement(2920960..2921277) Escherichia coli APEC O78 14482803 YP_007382002.1 CDS APECO78_14155 NC_020163.1 2921683 2922582 D COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; lipid kinase 2921683..2922582 Escherichia coli APEC O78 14482804 YP_007382003.1 CDS APECO78_14160 NC_020163.1 2922664 2923437 R COG1349 Transcriptional regulators of sugar metabolism; galactitol utilization operon repressor complement(2922664..2923437) Escherichia coli APEC O78 14482805 YP_007382004.1 CDS APECO78_14165 NC_020163.1 2923543 2924583 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; galactitol-1-phosphate dehydrogenase complement(2923543..2924583) Escherichia coli APEC O78 14482806 YP_007382005.1 CDS APECO78_14170 NC_020163.1 2924631 2925986 R COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system galactitol-specific enzyme IIC complement(2924631..2925986) Escherichia coli APEC O78 14482807 YP_007382006.1 CDS APECO78_14175 NC_020163.1 2925990 2926274 R COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system galactitol-specific transporter subunit IIB complement(2925990..2926274) Escherichia coli APEC O78 14482808 YP_007382007.1 CDS APECO78_14180 NC_020163.1 2926305 2926757 R COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system galactitol-specific transporter subunit IIA complement(2926305..2926757) Escherichia coli APEC O78 14482809 YP_007382008.1 CDS APECO78_14185 NC_020163.1 2926767 2928029 R COG4573 Predicted tagatose 6-phosphate kinase; D-tagatose-1,6-bisphosphate aldolase subunit GatZ complement(2926767..2928029) Escherichia coli APEC O78 14482810 YP_007382009.1 CDS gatY NC_020163.1 2928058 2928912 R COG0191 Fructose/tagatose bisphosphate aldolase; tagatose-bisphosphate aldolase complement(2928058..2928912) Escherichia coli APEC O78 14482811 YP_007382010.1 CDS APECO78_14195 NC_020163.1 2929222 2930274 R COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; fructose-bisphosphate aldolase complement(2929222..2930274) Escherichia coli APEC O78 14482812 YP_007382011.1 CDS APECO78_14200 NC_020163.1 2930531 2931808 D COG0477 Permeases of the major facilitator superfamily; putative nucleoside transporter 2930531..2931808 Escherichia coli APEC O78 14482813 YP_007382012.1 CDS APECO78_14205 NC_020163.1 2931805 2932809 D COG1397 ADP-ribosylglycohydrolase; putative hydrolase 2931805..2932809 Escherichia coli APEC O78 14482814 YP_007382013.1 CDS APECO78_14210 NC_020163.1 2932806 2933771 D COG0524 Sugar kinases, ribokinase family; putative kinase 2932806..2933771 Escherichia coli APEC O78 14482815 YP_007382014.1 CDS APECO78_14215 NC_020163.1 2933745 2934491 R COG2188 Transcriptional regulators; GntR family transcriptional regulator complement(2933745..2934491) Escherichia coli APEC O78 14482816 YP_007382015.1 CDS APECO78_14220 NC_020163.1 2934543 2935079 R COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); hydrolase complement(2934543..2935079) Escherichia coli APEC O78 14482817 YP_007382016.1 CDS APECO78_14225 NC_020163.1 2935063 2935365 R COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); putative hydrolase complement(2935063..2935365) Escherichia coli APEC O78 14482818 YP_007382017.1 CDS APECO78_14230 NC_020163.1 2935430 2936230 R COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase complement(2935430..2936230) Escherichia coli APEC O78 14482819 YP_007382018.1 CDS APECO78_14235 NC_020163.1 2936227 2937015 R COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase complement(2936227..2937015) Escherichia coli APEC O78 14482820 YP_007382019.1 CDS APECO78_14240 NC_020163.1 2937238 2937510 R COG1937 Uncharacterized protein conserved in bacteria; transcriptional repressor RcnR to maintain nickel and cobalt homeostasis complement(2937238..2937510) Escherichia coli APEC O78 14482821 YP_007382020.1 CDS APECO78_14245 NC_020163.1 2937631 2938455 D COG2215 ABC-type uncharacterized transport system, permease component; nickel/cobalt efflux protein RcnA 2937631..2938455 Escherichia coli APEC O78 14482822 YP_007382021.1 CDS APECO78_14250 NC_020163.1 2938674 2939012 D COG5455 Predicted integral membrane protein; hypothetical protein 2938674..2939012 Escherichia coli APEC O78 14482823 YP_007382022.1 CDS APECO78_14255 NC_020163.1 2939094 2940128 R fimbrial-like adhesin protein StcD complement(2939094..2940128) Escherichia coli APEC O78 14482824 YP_007382023.1 CDS APECO78_14260 NC_020163.1 2940144 2942624 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein complement(2940144..2942624) Escherichia coli APEC O78 14482825 YP_007382024.1 CDS APECO78_14265 NC_020163.1 2942640 2943314 R COG3121 P pilus assembly protein, chaperone PapD; putative chaperone complement(2942640..2943314) Escherichia coli APEC O78 14482826 YP_007382025.1 CDS APECO78_14270 NC_020163.1 2943394 2943936 R COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein complement(2943394..2943936) Escherichia coli APEC O78 14482827 YP_007382026.1 CDS APECO78_14275 NC_020163.1 2944229 2944510 R hypothetical protein complement(2944229..2944510) Escherichia coli APEC O78 14482828 YP_007382027.1 CDS APECO78_14280 NC_020163.1 2944773 2945882 R COG0489 ATPases involved in chromosome partitioning; antiporter inner membrane protein complement(2944773..2945882) Escherichia coli APEC O78 14482829 YP_007382028.1 CDS metG NC_020163.1 2946014 2948047 D COG0143 Methionyl-tRNA synthetase; methionyl-tRNA ligase 2946014..2948047 Escherichia coli APEC O78 14482830 YP_007382029.1 CDS APECO78_14290 NC_020163.1 2948188 2951982 D COG3831 Uncharacterized conserved protein; hypothetical protein 2948188..2951982 Escherichia coli APEC O78 14482831 YP_007382030.1 CDS APECO78_14305 NC_020163.1 2956309 2957397 D COG0714 MoxR-like ATPases; transporter subunit 2956309..2957397 Escherichia coli APEC O78 14482832 YP_007382031.1 CDS APECO78_14310 NC_020163.1 2957408 2959687 D hypothetical protein 2957408..2959687 Escherichia coli APEC O78 14482833 YP_007382032.1 CDS APECO78_14315 NC_020163.1 2959680 2960816 D hypothetical protein 2959680..2960816 Escherichia coli APEC O78 14482834 YP_007382033.1 CDS APECO78_14320 NC_020163.1 2960813 2962813 D hypothetical protein 2960813..2962813 Escherichia coli APEC O78 14482835 YP_007382034.1 CDS APECO78_14325 NC_020163.1 2962938 2963399 D COG4808 Uncharacterized protein conserved in bacteria; hypothetical protein 2962938..2963399 Escherichia coli APEC O78 14482836 YP_007382035.1 CDS APECO78_14330 NC_020163.1 2963440 2963910 R COG4807 Uncharacterized protein conserved in bacteria; hypothetical protein complement(2963440..2963910) Escherichia coli APEC O78 14482837 YP_007382036.1 CDS APECO78_14335 NC_020163.1 2963957 2964676 R COG3279 Response regulator of the LytR/AlgR family; two-component response-regulatory protein YehT complement(2963957..2964676) Escherichia coli APEC O78 14482838 YP_007382037.1 CDS APECO78_14340 NC_020163.1 2964673 2966358 R COG3275 Putative regulator of cell autolysis; sensory kinase in two-component system with YehT complement(2964673..2966358) Escherichia coli APEC O78 14482839 YP_007382038.1 CDS APECO78_14345 NC_020163.1 2966580 2967311 D COG0789 Predicted transcriptional regulators; transcriptional regulator MirA 2966580..2967311 Escherichia coli APEC O78 14482840 YP_007382039.1 CDS APECO78_14350 NC_020163.1 2967371 2967478 D hypothetical protein 2967371..2967478 Escherichia coli APEC O78 14482841 YP_007382040.1 CDS APECO78_14355 NC_020163.1 2967459 2968190 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; quaternare amine family ABC transporter permease complement(2967459..2968190) Escherichia coli APEC O78 14482842 YP_007382041.1 CDS APECO78_14360 NC_020163.1 2968195 2969121 R COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; putative ABC transporter ATP-binding protein complement(2968195..2969121) Escherichia coli APEC O78 14482843 YP_007382042.1 CDS APECO78_14365 NC_020163.1 2969114 2970271 R COG1174 ABC-type proline/glycine betaine transport systems, permease component; binding-protein-dependent transport system inner membrane protein complement(2969114..2970271) Escherichia coli APEC O78 14482844 YP_007382043.1 CDS APECO78_14370 NC_020163.1 2970278 2971195 R COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); transporter subunit complement(2970278..2971195) Escherichia coli APEC O78 14482845 YP_007382044.1 CDS APECO78_14375 NC_020163.1 2971406 2973703 R COG1472 Beta-glucosidase-related glycosidases; beta-D-glucoside glucohydrolase complement(2971406..2973703) Escherichia coli APEC O78 14482846 YP_007382045.1 CDS APECO78_14380 NC_020163.1 2973899 2975614 D COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase 2973899..2975614 Escherichia coli APEC O78 14482847 YP_007382046.1 CDS pbpG NC_020163.1 2975652 2976584 R COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine endopeptidase complement(2975652..2976584) Escherichia coli APEC O78 14482848 YP_007382047.1 CDS APECO78_14390 NC_020163.1 2976758 2977345 R inner membrane protein complement(2976758..2977345) Escherichia coli APEC O78 14482849 YP_007382048.1 CDS APECO78_14395 NC_020163.1 2977515 2978093 D COG0586 Uncharacterized membrane-associated protein; inner membrane protein 2977515..2978093 Escherichia coli APEC O78 14482850 YP_007382049.1 CDS APECO78_14400 NC_020163.1 2978223 2978984 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase complement(2978223..2978984) Escherichia coli APEC O78 14482851 YP_007382050.1 CDS APECO78_14405 NC_020163.1 2979037 2980473 R COG1538 Outer membrane protein; multidrug resistance outer membrane protein MdtQ complement(2979037..2980473) Escherichia coli APEC O78 14482852 YP_007382051.1 CDS APECO78_14410 NC_020163.1 2980697 2980780 D hypothetical protein 2980697..2980780 Escherichia coli APEC O78 14482853 YP_007382052.1 CDS APECO78_14415 NC_020163.1 2981151 2982098 R COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase C complement(2981151..2982098) Escherichia coli APEC O78 14482854 YP_007382053.1 CDS APECO78_14420 NC_020163.1 2982337 2982735 D COG1380 Putative effector of murein hydrolase LrgA; hypothetical protein 2982337..2982735 Escherichia coli APEC O78 14482855 YP_007382054.1 CDS APECO78_14425 NC_020163.1 2982732 2983427 D COG1346 Putative effector of murein hydrolase; hypothetical protein 2982732..2983427 Escherichia coli APEC O78 14482856 YP_007382055.1 CDS APECO78_14430 NC_020163.1 2983557 2984441 D COG0295 Cytidine deaminase; cytidine deaminase 2983557..2984441 Escherichia coli APEC O78 14482857 YP_007382056.1 CDS APECO78_14435 NC_020163.1 2984591 2985310 D COG2949 Uncharacterized membrane protein; vancomycin high temperature exclusion protein 2984591..2985310 Escherichia coli APEC O78 14482858 YP_007382057.1 CDS APECO78_14440 NC_020163.1 2985313 2985552 D hypothetical protein 2985313..2985552 Escherichia coli APEC O78 14482859 YP_007382058.1 CDS APECO78_14445 NC_020163.1 2985871 2987109 D COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; dihydropyrimidine dehydrogenase subunit A 2985871..2987109 Escherichia coli APEC O78 14482860 YP_007382059.1 CDS APECO78_14450 NC_020163.1 2987103 2988338 D COG0167 Dihydroorotate dehydrogenase; dihydropyrimidine dehydrogenase subunit B 2987103..2988338 Escherichia coli APEC O78 14482861 YP_007382060.1 CDS APECO78_14455 NC_020163.1 2988409 2989419 R COG4211 ABC-type glucose/galactose transport system, permease component; beta-methylgalactoside transporter inner membrane protein complement(2988409..2989419) Escherichia coli APEC O78 14482862 YP_007382061.1 CDS APECO78_14460 NC_020163.1 2989435 2990955 R COG1129 ABC-type sugar transport system, ATPase component; galactose/methyl galaxtoside transporter ATP-binding protein complement(2989435..2990955) Escherichia coli APEC O78 14482863 YP_007382062.1 CDS APECO78_14465 NC_020163.1 2991016 2992014 R COG1879 ABC-type sugar transport system, periplasmic component; methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB complement(2991016..2992014) Escherichia coli APEC O78 14482864 YP_007382063.1 CDS APECO78_14470 NC_020163.1 2992294 2993334 R COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalS complement(2992294..2993334) Escherichia coli APEC O78 14482865 YP_007382064.1 CDS APECO78_14475 NC_020163.1 2993476 2994633 R COG2311 Predicted membrane protein; hypothetical protein complement(2993476..2994633) Escherichia coli APEC O78 14482866 YP_007382065.1 CDS APECO78_14480 NC_020163.1 2994650 2995318 R COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I complement(2994650..2995318) Escherichia coli APEC O78 14482867 YP_007382066.1 CDS APECO78_14485 NC_020163.1 2995576 2996412 D COG0627 Predicted esterase; S-formylglutathione hydrolase 2995576..2996412 Escherichia coli APEC O78 14482868 YP_007382067.1 CDS APECO78_14490 NC_020163.1 2996444 2997835 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; catecholate siderophore receptor CirA complement(2996444..2997835) Escherichia coli APEC O78 14482869 YP_007382068.1 CDS APECO78_14495 NC_020163.1 2997853 2998434 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; catecholate siderophore receptor CirA complement(2997853..2998434) Escherichia coli APEC O78 14482870 YP_007382069.1 CDS APECO78_14500 NC_020163.1 2998728 3000197 R COG0833 Amino acid transporters; lysine transporter complement(2998728..3000197) Escherichia coli APEC O78 14482871 YP_007382070.1 CDS APECO78_14505 NC_020163.1 3000402 3001283 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator complement(3000402..3001283) Escherichia coli APEC O78 14482872 YP_007382071.1 CDS APECO78_14510 NC_020163.1 3001382 3002431 D COG2855 Predicted membrane protein; hypothetical protein 3001382..3002431 Escherichia coli APEC O78 14482873 YP_007382072.1 CDS APECO78_14515 NC_020163.1 3002505 3003362 D COG0648 Endonuclease IV; endonuclease IV 3002505..3003362 Escherichia coli APEC O78 14482874 YP_007382073.1 CDS APECO78_14520 NC_020163.1 3003365 3004453 D COG2771 DNA-binding HTH domain-containing proteins; kinase 3003365..3004453 Escherichia coli APEC O78 14482875 YP_007382074.1 CDS APECO78_14525 NC_020163.1 3004509 3005759 R COG1972 Nucleoside permease; putative transport system permease complement(3004509..3005759) Escherichia coli APEC O78 14482876 YP_007382075.1 CDS rihB NC_020163.1 3005859 3006800 R COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase 2 complement(3005859..3006800) Escherichia coli APEC O78 14482877 YP_007382076.1 CDS APECO78_14535 NC_020163.1 3006969 3007628 D COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; DNA-binding transcriptional activator YeiL 3006969..3007628 Escherichia coli APEC O78 14482878 YP_007382077.1 CDS APECO78_14540 NC_020163.1 3007825 3009075 R COG1972 Nucleoside permease; putative sodium/proton nucleoside transporter complement(3007825..3009075) Escherichia coli APEC O78 14482879 YP_007382078.1 CDS APECO78_14545 NC_020163.1 3009169 3010089 R COG2313 Uncharacterized enzyme involved in pigment biosynthesis; hypothetical protein complement(3009169..3010089) Escherichia coli APEC O78 14482880 YP_007382079.1 CDS APECO78_14550 NC_020163.1 3010077 3011018 R COG0524 Sugar kinases, ribokinase family; pseudouridine kinase complement(3010077..3011018) Escherichia coli APEC O78 14482881 YP_007382080.1 CDS APECO78_14555 NC_020163.1 3011442 3013133 R COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB; PTS system fructose-specific transporter subunit IIBC complement(3011442..3013133) Escherichia coli APEC O78 14482882 YP_007382081.1 CDS APECO78_14560 NC_020163.1 3013150 3014088 R COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 1-phosphofructokinase complement(3013150..3014088) Escherichia coli APEC O78 14482883 YP_007382082.1 CDS APECO78_14565 NC_020163.1 3014088 3015218 R COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein complement(3014088..3015218) Escherichia coli APEC O78 14482884 YP_007382083.1 CDS APECO78_14570 NC_020163.1 3015586 3016767 D COG0477 Permeases of the major facilitator superfamily; sugar efflux transporter B 3015586..3016767 Escherichia coli APEC O78 14482885 YP_007382084.1 CDS APECO78_14575 NC_020163.1 3016764 3017018 R COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein complement(3016764..3017018) Escherichia coli APEC O78 14482886 YP_007382085.1 CDS APECO78_14580 NC_020163.1 3017173 3017745 D COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 3017173..3017745 Escherichia coli APEC O78 14482887 YP_007382086.1 CDS APECO78_14585 NC_020163.1 3017968 3019434 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; putative oxidoreductase 3017968..3019434 Escherichia coli APEC O78 14482888 YP_007382087.1 CDS APECO78_14590 NC_020163.1 3019552 3020538 D COG0523 Putative GTPases (G3E family); hypothetical protein 3019552..3020538 Escherichia coli APEC O78 14482889 YP_007382088.1 CDS APECO78_14595 NC_020163.1 3020577 3021290 D COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 3020577..3021290 Escherichia coli APEC O78 14482890 YP_007382089.1 CDS APECO78_14600 NC_020163.1 3021702 3022268 D COG0791 Cell wall-associated hydrolases (invasion-associated proteins); putative outer membrane lipoprotein 3021702..3022268 Escherichia coli APEC O78 14482891 YP_007382090.1 CDS APECO78_14605 NC_020163.1 3022449 3024005 D COG2200 FOG: EAL domain; phage resistance protein 3022449..3024005 Escherichia coli APEC O78 14482892 YP_007382091.1 CDS APECO78_14610 NC_020163.1 3024087 3025901 D COG4166 ABC-type oligopeptide transport system, periplasmic component; microcin C ABC transporter periplasmic binding protein YejA 3024087..3025901 Escherichia coli APEC O78 14482893 YP_007382092.1 CDS APECO78_14615 NC_020163.1 3025902 3026996 D COG4174 ABC-type uncharacterized transport system, permease component; putative transport system permease 3025902..3026996 Escherichia coli APEC O78 14482894 YP_007382093.1 CDS APECO78_14620 NC_020163.1 3026996 3028021 D COG4239 ABC-type uncharacterized transport system, permease component; microcin C ABC transporter permease 3026996..3028021 Escherichia coli APEC O78 14482895 YP_007382094.1 CDS APECO78_14625 NC_020163.1 3028023 3029612 D COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; microcin C ABC transporter ATP-binding protein YejF 3028023..3029612 Escherichia coli APEC O78 14482896 YP_007382095.1 CDS APECO78_14630 NC_020163.1 3029616 3029960 R hypothetical protein complement(3029616..3029960) Escherichia coli APEC O78 14482897 YP_007382096.1 CDS APECO78_14635 NC_020163.1 3030293 3031483 R COG0477 Permeases of the major facilitator superfamily; bicyclomycin/multidrug efflux system complement(3030293..3031483) Escherichia coli APEC O78 14482898 YP_007382097.1 CDS APECO78_14640 NC_020163.1 3031511 3032206 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 16S rRNA pseudouridylate synthase A complement(3031511..3032206) Escherichia coli APEC O78 14482899 YP_007382098.1 CDS APECO78_14645 NC_020163.1 3032356 3034116 D COG1061 DNA or RNA helicases of superfamily II; putative ATP-dependent helicase 3032356..3034116 Escherichia coli APEC O78 14482900 YP_007382099.1 CDS APECO78_14650 NC_020163.1 3034241 3034525 D COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25 3034241..3034525 Escherichia coli APEC O78 14482901 YP_007382100.1 CDS APECO78_14655 NC_020163.1 3034664 3035671 R COG3081 Nucleoid-associated protein; nucleoid-associated protein NdpA complement(3034664..3035671) Escherichia coli APEC O78 14482902 YP_007382101.1 CDS APECO78_14660 NC_020163.1 3035853 3036080 D COG3082 Uncharacterized protein conserved in bacteria; hypothetical protein 3035853..3036080 Escherichia coli APEC O78 14482903 YP_007382102.1 CDS APECO78_14665 NC_020163.1 3036100 3037860 D COG3083 Predicted hydrolase of alkaline phosphatase superfamily; putative sulfatase 3036100..3037860 Escherichia coli APEC O78 14482904 YP_007382103.1 CDS APECO78_14670 NC_020163.1 3038294 3038431 D putative protein from DinI-like family 3038294..3038431 Escherichia coli APEC O78 14484629 YP_007382104.1 CDS APECO78_14675 NC_020163.1 3038785 3039150 D COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 3038785..3039150 Escherichia coli APEC O78 14482906 YP_007382105.1 CDS APECO78_14680 NC_020163.1 3039108 3040013 D COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 3039108..3040013 Escherichia coli APEC O78 14482907 YP_007382106.1 CDS APECO78_14685 NC_020163.1 3040191 3042080 D COG1479 Uncharacterized conserved protein; hypothetical protein 3040191..3042080 Escherichia coli APEC O78 14482908 YP_007382107.1 CDS APECO78_14690 NC_020163.1 3042176 3042304 R COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA invertase complement(3042176..3042304) Escherichia coli APEC O78 14482909 YP_007382108.1 CDS APECO78_14695 NC_020163.1 3042745 3043185 D hypothetical protein 3042745..3043185 Escherichia coli APEC O78 14482910 YP_007382109.1 CDS APECO78_14700 NC_020163.1 3043157 3043567 R putative phage tail fiber assembly protein complement(3043157..3043567) Escherichia coli APEC O78 14482911 YP_007382110.1 CDS APECO78_14705 NC_020163.1 3043567 3043794 R hypothetical protein complement(3043567..3043794) Escherichia coli APEC O78 14482912 YP_007382111.1 CDS APECO78_14710 NC_020163.1 3043900 3044310 D hypothetical protein 3043900..3044310 Escherichia coli APEC O78 14482913 YP_007382112.1 CDS APECO78_14715 NC_020163.1 3044492 3044761 R hypothetical protein complement(3044492..3044761) Escherichia coli APEC O78 14482914 YP_007382113.1 CDS APECO78_14720 NC_020163.1 3044769 3045383 R COG3179 Predicted chitinase; phage encoded lysozyme complement(3044769..3045383) Escherichia coli APEC O78 14482915 YP_007382114.1 CDS APECO78_14725 NC_020163.1 3045383 3045664 R phage membrane protein complement(3045383..3045664) Escherichia coli APEC O78 14482916 YP_007382115.1 CDS APECO78_14730 NC_020163.1 3045651 3046037 R phage membrane protein complement(3045651..3046037) Escherichia coli APEC O78 14482917 YP_007382116.1 CDS APECO78_14735 NC_020163.1 3046146 3046796 R hypothetical protein complement(3046146..3046796) Escherichia coli APEC O78 14482918 YP_007382117.1 CDS APECO78_14740 NC_020163.1 3047149 3047418 R hypothetical protein complement(3047149..3047418) Escherichia coli APEC O78 14482919 YP_007382118.1 CDS APECO78_14745 NC_020163.1 3047925 3048305 R putative phage AdoMet-dependent methyltransferase complement(3047925..3048305) Escherichia coli APEC O78 14482920 YP_007382119.1 CDS APECO78_14750 NC_020163.1 3048810 3049172 D hypothetical protein 3048810..3049172 Escherichia coli APEC O78 14482921 YP_007382120.1 CDS APECO78_14755 NC_020163.1 3049238 3050062 D COG5532 Uncharacterized conserved protein; hypothetical protein 3049238..3050062 Escherichia coli APEC O78 14482922 YP_007382121.1 CDS APECO78_14760 NC_020163.1 3050190 3050726 D COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 3050190..3050726 Escherichia coli APEC O78 14482923 YP_007382122.1 CDS APECO78_14765 NC_020163.1 3050717 3051079 D hypothetical protein 3050717..3051079 Escherichia coli APEC O78 14482924 YP_007382123.1 CDS APECO78_14770 NC_020163.1 3051355 3051564 D hypothetical protein 3051355..3051564 Escherichia coli APEC O78 14482925 YP_007382124.1 CDS APECO78_14775 NC_020163.1 3051567 3052769 D COG0582 Integrase; hypothetical protein 3051567..3052769 Escherichia coli APEC O78 14482926 YP_007382125.1 CDS APECO78_14780 NC_020163.1 3052753 3053604 R hypothetical protein complement(3052753..3053604) Escherichia coli APEC O78 14482927 YP_007382126.1 CDS APECO78_14785 NC_020163.1 3053609 3053809 R hypothetical protein complement(3053609..3053809) Escherichia coli APEC O78 14482928 YP_007382127.1 CDS APECO78_14790 NC_020163.1 3054200 3056488 R COG3468 Type V secretory pathway, adhesin AidA; outer membrane autotransporter complement(3054200..3056488) Escherichia coli APEC O78 14484630 YP_007382128.1 CDS APECO78_14795 NC_020163.1 3056889 3057536 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator NarP 3056889..3057536 Escherichia coli APEC O78 14482930 YP_007382129.1 CDS APECO78_14800 NC_020163.1 3057571 3058623 R COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; heme lyase subunit CcmH complement(3057571..3058623) Escherichia coli APEC O78 14482931 YP_007382130.1 CDS APECO78_14805 NC_020163.1 3058620 3059177 R COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein DsbE complement(3058620..3059177) Escherichia coli APEC O78 14482932 YP_007382131.1 CDS APECO78_14810 NC_020163.1 3059174 3061117 R COG1138 Cytochrome c biogenesis factor; heme lyase subunit CcmF complement(3059174..3061117) Escherichia coli APEC O78 14482933 YP_007382132.1 CDS APECO78_14815 NC_020163.1 3061114 3061593 R COG2332 Cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE complement(3061114..3061593) Escherichia coli APEC O78 14482934 YP_007382133.1 CDS APECO78_14820 NC_020163.1 3061590 3061799 R COG3114 Heme exporter protein D; cytochrome c biogenesis protein CcmD complement(3061590..3061799) Escherichia coli APEC O78 14482935 YP_007382134.1 CDS APECO78_14825 NC_020163.1 3061796 3062533 R COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme exporter protein C complement(3061796..3062533) Escherichia coli APEC O78 14482936 YP_007382135.1 CDS APECO78_14830 NC_020163.1 3062575 3063237 R COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component; Heme exporter protein B complement(3062575..3063237) Escherichia coli APEC O78 14482937 YP_007382136.1 CDS APECO78_14835 NC_020163.1 3063234 3063851 R COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component; cytochrome c biogenesis protein CcmA complement(3063234..3063851) Escherichia coli APEC O78 14482938 YP_007382137.1 CDS APECO78_14840 NC_020163.1 3063870 3064472 R COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; cytochrome c-type protein NapC complement(3063870..3064472) Escherichia coli APEC O78 14482939 YP_007382138.1 CDS APECO78_14845 NC_020163.1 3064482 3064931 R COG3043 Nitrate reductase cytochrome c-type subunit; citrate reductase cytochrome c-type subunit complement(3064482..3064931) Escherichia coli APEC O78 14482940 YP_007382139.1 CDS APECO78_14850 NC_020163.1 3064928 3065791 R COG0348 Polyferredoxin; quinol dehydrogenase membrane component complement(3064928..3065791) Escherichia coli APEC O78 14482941 YP_007382140.1 CDS APECO78_14855 NC_020163.1 3065778 3066473 R COG1145 Ferredoxin; ferredoxin-type protein complement(3065778..3066473) Escherichia coli APEC O78 14482942 YP_007382141.1 CDS APECO78_14860 NC_020163.1 3066480 3068966 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; nitrate reductase catalytic subunit complement(3066480..3068966) Escherichia coli APEC O78 14482943 YP_007382142.1 CDS APECO78_14865 NC_020163.1 3068963 3069226 R COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase; assembly protein for periplasmic nitrate reductase complement(3068963..3069226) Escherichia coli APEC O78 14482944 YP_007382143.1 CDS APECO78_14870 NC_020163.1 3069216 3069710 R COG1145 Ferredoxin; ferredoxin-type protein complement(3069216..3069710) Escherichia coli APEC O78 14482945 YP_007382144.1 CDS APECO78_14875 NC_020163.1 3069810 3069983 D COG1626 Neutral trehalase; hypothetical protein 3069810..3069983 Escherichia coli APEC O78 14482946 YP_007382145.1 CDS APECO78_14880 NC_020163.1 3070118 3070606 D COG4574 Serine protease inhibitor ecotin; ecotin 3070118..3070606 Escherichia coli APEC O78 14482947 YP_007382146.1 CDS APECO78_14885 NC_020163.1 3070984 3072630 R COG0579 Predicted dehydrogenase; malate:quinone oxidoreductase complement(3070984..3072630) Escherichia coli APEC O78 14482948 YP_007382147.1 CDS APECO78_14890 NC_020163.1 3072848 3074491 R COG4615 ABC-type siderophore export system, fused ATPase and permease components; ABC transporter ATP-binding protein complement(3072848..3074491) Escherichia coli APEC O78 14482949 YP_007382148.1 CDS APECO78_14895 NC_020163.1 3074567 3075217 R COG3145 Alkylated DNA repair protein; alpha-ketoglutarate-dependent dioxygenase AlkB complement(3074567..3075217) Escherichia coli APEC O78 14482950 YP_007382149.1 CDS APECO78_14900 NC_020163.1 3075217 3076281 R COG2169 Adenosine deaminase; bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase complement(3075217..3076281) Escherichia coli APEC O78 14482951 YP_007382150.1 CDS APECO78_14905 NC_020163.1 3076355 3077410 R COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; thiamine biosynthesis lipoprotein ApbE complement(3076355..3077410) Escherichia coli APEC O78 14482952 YP_007382151.1 CDS APECO78_14910 NC_020163.1 3077522 3078625 R COG3203 Outer membrane protein (porin); outer membrane porin protein C complement(3077522..3078625) Escherichia coli APEC O78 14482953 YP_007382152.1 CDS APECO78_14915 NC_020163.1 3079364 3082036 D COG0642 Signal transduction histidine kinase; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 3079364..3082036 Escherichia coli APEC O78 14482954 YP_007382153.1 CDS APECO78_14920 NC_020163.1 3082053 3082703 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator RcsB 3082053..3082703 Escherichia coli APEC O78 14482955 YP_007382154.1 CDS APECO78_14925 NC_020163.1 3082903 3085752 R COG0642 Signal transduction histidine kinase; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(3082903..3085752) Escherichia coli APEC O78 14482956 YP_007382155.1 CDS APECO78_14930 NC_020163.1 3085919 3087745 D COG0642 Signal transduction histidine kinase; sensory histidine kinase AtoS 3085919..3087745 Escherichia coli APEC O78 14482957 YP_007382156.1 CDS APECO78_14935 NC_020163.1 3087742 3089127 D COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; acetoacetate metabolism regulatory protein AtoC 3087742..3089127 Escherichia coli APEC O78 14482958 YP_007382157.1 CDS APECO78_14940 NC_020163.1 3089323 3089985 D COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; acetyl-CoA:acetoacetyl-CoA transferase alpha subunit 3089323..3089985 Escherichia coli APEC O78 14482959 YP_007382158.1 CDS APECO78_14945 NC_020163.1 3089985 3090635 D COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; acetyl-CoA:acetoacetyl-CoA transferase subunit beta 3089985..3090635 Escherichia coli APEC O78 14482960 YP_007382159.1 CDS APECO78_14950 NC_020163.1 3090632 3091954 D COG2031 Short chain fatty acids transporter; short chain fatty acid transporter 3090632..3091954 Escherichia coli APEC O78 14482961 YP_007382160.1 CDS APECO78_14955 NC_020163.1 3091985 3093169 D COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 3091985..3093169 Escherichia coli APEC O78 14482962 YP_007382161.1 CDS APECO78_14960 NC_020163.1 3093243 3094019 R COG4676 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3093243..3094019) Escherichia coli APEC O78 14482963 YP_007382162.1 CDS APECO78_14965 NC_020163.1 3094024 3095673 R COG5445 Predicted secreted protein; hypothetical protein complement(3094024..3095673) Escherichia coli APEC O78 14482964 YP_007382163.1 CDS APECO78_14970 NC_020163.1 3095674 3100278 R COG2373 Large extracellular alpha-helical protein; hypothetical protein complement(3095674..3100278) Escherichia coli APEC O78 14482965 YP_007382164.1 CDS APECO78_14975 NC_020163.1 3100212 3100835 R COG3234 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3100212..3100835) Escherichia coli APEC O78 14482966 YP_007382165.1 CDS APECO78_14980 NC_020163.1 3100832 3102520 R COG4685 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3100832..3102520) Escherichia coli APEC O78 14482967 YP_007382166.1 CDS APECO78_14985 NC_020163.1 3102669 3105296 R COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A complement(3102669..3105296) Escherichia coli APEC O78 14482968 YP_007382167.1 CDS APECO78_14990 NC_020163.1 3105443 3106165 D COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase; 3-demethylubiquinone-9 3-methyltransferase 3105443..3106165 Escherichia coli APEC O78 14482969 YP_007382168.1 CDS APECO78_14995 NC_020163.1 3106293 3110045 R COG3468 Type V secretory pathway, adhesin AidA; adhesin complement(3106293..3110045) Escherichia coli APEC O78 14482970 YP_007382169.1 CDS APECO78_15000 NC_020163.1 3110741 3113026 D COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 3110741..3113026 Escherichia coli APEC O78 14482971 YP_007382170.1 CDS APECO78_15005 NC_020163.1 3113261 3114391 D COG0208 Ribonucleotide reductase, beta subunit; putative ribonucleotide reductase, beta subunit 3113261..3114391 Escherichia coli APEC O78 14482972 YP_007382171.1 CDS APECO78_15010 NC_020163.1 3114391 3114645 D COG0633 Ferredoxin; 2Fe-2S ferredoxin 3114391..3114645 Escherichia coli APEC O78 14482973 YP_007382172.1 CDS APECO78_15015 NC_020163.1 3114699 3115349 R hypothetical protein complement(3114699..3115349) Escherichia coli APEC O78 14482974 YP_007382173.1 CDS APECO78_15020 NC_020163.1 3115564 3115770 D COG0583 Transcriptional regulator; hypothetical protein 3115564..3115770 Escherichia coli APEC O78 14482975 YP_007382174.1 CDS APECO78_15025 NC_020163.1 3116236 3117306 D hypothetical protein 3116236..3117306 Escherichia coli APEC O78 14482976 YP_007382175.1 CDS glpQ NC_020163.1 3117525 3118601 R COG0584 Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase complement(3117525..3118601) Escherichia coli APEC O78 14482977 YP_007382176.1 CDS APECO78_15035 NC_020163.1 3118606 3119964 R COG2271 Sugar phosphate permease; sn-glycerol-3-phosphate transporter complement(3118606..3119964) Escherichia coli APEC O78 14482978 YP_007382177.1 CDS APECO78_15040 NC_020163.1 3120237 3121865 D COG0578 Glycerol-3-phosphate dehydrogenase; sn-glycerol-3-phosphate dehydrogenase subunit A 3120237..3121865 Escherichia coli APEC O78 14482979 YP_007382178.1 CDS APECO78_15045 NC_020163.1 3121855 3123114 D COG3075 Anaerobic glycerol-3-phosphate dehydrogenase; anaerobic glycerol-3-phosphate dehydrogenase subunit B 3121855..3123114 Escherichia coli APEC O78 14482980 YP_007382179.1 CDS glpC NC_020163.1 3123111 3124301 D COG0247 Fe-S oxidoreductase; sn-glycerol-3-phosphate dehydrogenase subunit C 3123111..3124301 Escherichia coli APEC O78 14482981 YP_007382180.1 CDS APECO78_15055 NC_020163.1 3124495 3125397 D COG5464 Uncharacterized conserved protein; hypothetical protein 3124495..3125397 Escherichia coli APEC O78 14482982 YP_007382181.1 CDS APECO78_15060 NC_020163.1 3125438 3125827 R COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2-keto-3-deoxy-L-rhamnonate aldolase complement(3125438..3125827) Escherichia coli APEC O78 14482983 YP_007382182.1 CDS APECO78_15065 NC_020163.1 3125963 3127165 R COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; hypothetical protein complement(3125963..3127165) Escherichia coli APEC O78 14482984 YP_007382183.1 CDS APECO78_15070 NC_020163.1 3127265 3127807 R outer membrane porin protein complement(3127265..3127807) Escherichia coli APEC O78 14482985 YP_007382184.1 CDS APECO78_15075 NC_020163.1 3128086 3128511 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; nucleoside triphosphatase NudI 3128086..3128511 Escherichia coli APEC O78 14482986 YP_007382185.1 CDS APECO78_15080 NC_020163.1 3128550 3129152 R lipopolysaccharide core heptose(II)-phosphate phosphatase complement(3128550..3129152) Escherichia coli APEC O78 14482987 YP_007382186.1 CDS APECO78_15085 NC_020163.1 3129460 3130599 D COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 3129460..3130599 Escherichia coli APEC O78 14482988 YP_007382187.1 CDS APECO78_15090 NC_020163.1 3130603 3131571 D COG0463 Glycosyltransferases involved in cell wall biogenesis; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 3130603..3131571 Escherichia coli APEC O78 14482989 YP_007382188.1 CDS APECO78_15095 NC_020163.1 3131571 3133553 D COG0223 Methionyl-tRNA formyltransferase; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 3131571..3133553 Escherichia coli APEC O78 14482990 YP_007382189.1 CDS APECO78_15100 NC_020163.1 3133550 3134440 D COG0726 Predicted xylanase/chitin deacetylase; hypothetical protein 3133550..3134440 Escherichia coli APEC O78 14482991 YP_007382190.1 CDS APECO78_15105 NC_020163.1 3134440 3136092 D COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; 4-amino-4-deoxy-L-arabinose transferase 3134440..3136092 Escherichia coli APEC O78 14482992 YP_007382191.1 CDS APECO78_15110 NC_020163.1 3136089 3136424 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; polymyxin resistance protein PmrL 3136089..3136424 Escherichia coli APEC O78 14482993 YP_007382192.1 CDS APECO78_15115 NC_020163.1 3136424 3136810 D 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF 3136424..3136810 Escherichia coli APEC O78 14482994 YP_007382193.1 CDS APECO78_15120 NC_020163.1 3136804 3137070 R COG1601 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain; polymyxin resistance protein B complement(3136804..3137070) Escherichia coli APEC O78 14482995 YP_007382194.1 CDS APECO78_15125 NC_020163.1 3137180 3138535 R COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; O-succinylbenzoic acid--CoA ligase complement(3137180..3138535) Escherichia coli APEC O78 14482996 YP_007382195.1 CDS APECO78_15130 NC_020163.1 3138532 3139494 R COG1441 O-succinylbenzoate synthase; O-succinylbenzoate synthase complement(3138532..3139494) Escherichia coli APEC O78 14482997 YP_007382196.1 CDS APECO78_15135 NC_020163.1 3139494 3140351 R COG0447 Dihydroxynaphthoic acid synthase; dihydroxynaphthoic acid synthetase complement(3139494..3140351) Escherichia coli APEC O78 14482998 YP_007382197.1 CDS APECO78_15140 NC_020163.1 3140366 3141124 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase complement(3140366..3141124) Escherichia coli APEC O78 14482999 YP_007382198.1 CDS APECO78_15145 NC_020163.1 3141121 3142791 R COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1- carboxylate synthase complement(3141121..3142791) Escherichia coli APEC O78 14483000 YP_007382199.1 CDS APECO78_15150 NC_020163.1 3142880 3144175 R COG1169 Isochorismate synthase; menaquinone-specific isochorismate synthase complement(3142880..3144175) Escherichia coli APEC O78 14483001 YP_007382200.1 CDS APECO78_15155 NC_020163.1 3144254 3144559 R COG4575 Uncharacterized conserved protein; hypothetical protein complement(3144254..3144559) Escherichia coli APEC O78 14483002 YP_007382201.1 CDS APECO78_15160 NC_020163.1 3144614 3145075 R COG2153 Predicted acyltransferase; acyltransferase complement(3144614..3145075) Escherichia coli APEC O78 14483003 YP_007382202.1 CDS APECO78_15165 NC_020163.1 3145140 3146057 D COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; ribonuclease BN 3145140..3146057 Escherichia coli APEC O78 14483004 YP_007382203.1 CDS APECO78_15180 NC_020163.1 3147534 3149288 R COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; hypothetical protein complement(3147534..3149288) Escherichia coli APEC O78 14483005 YP_007382204.1 CDS APECO78_15185 NC_020163.1 3149426 3150397 D COG2234 Predicted aminopeptidases; peptidase 3149426..3150397 Escherichia coli APEC O78 14483006 YP_007382205.1 CDS APECO78_15190 NC_020163.1 3150500 3151003 D hypothetical protein 3150500..3151003 Escherichia coli APEC O78 14483007 YP_007382206.1 CDS APECO78_15195 NC_020163.1 3151070 3152527 R COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH:ubiquinone oxidoreductase subunit N complement(3151070..3152527) Escherichia coli APEC O78 14483008 YP_007382207.1 CDS APECO78_15200 NC_020163.1 3152534 3154063 R COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH dehydrogenase subunit M complement(3152534..3154063) Escherichia coli APEC O78 14483009 YP_007382208.1 CDS APECO78_15205 NC_020163.1 3154227 3156068 R COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH:ubiquinone oxidoreductase subunit L complement(3154227..3156068) Escherichia coli APEC O78 14483010 YP_007382209.1 CDS APECO78_15210 NC_020163.1 3156065 3156367 R COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH:ubiquinone oxidoreductase subunit K complement(3156065..3156367) Escherichia coli APEC O78 14483011 YP_007382210.1 CDS APECO78_15215 NC_020163.1 3156364 3156918 R COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH:ubiquinone oxidoreductase subunit J complement(3156364..3156918) Escherichia coli APEC O78 14483012 YP_007382211.1 CDS APECO78_15220 NC_020163.1 3156930 3157472 R COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I complement(3156930..3157472) Escherichia coli APEC O78 14483013 YP_007382212.1 CDS APECO78_15225 NC_020163.1 3157487 3158464 R COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH:ubiquinone oxidoreductase subunit H complement(3157487..3158464) Escherichia coli APEC O78 14483014 YP_007382213.1 CDS APECO78_15230 NC_020163.1 3158461 3161187 R COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G complement(3158461..3161187) Escherichia coli APEC O78 14483015 YP_007382214.1 CDS APECO78_15235 NC_020163.1 3161240 3162577 R COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; NADH dehydrogenase I subunit F complement(3161240..3162577) Escherichia coli APEC O78 14483016 YP_007382215.1 CDS APECO78_15240 NC_020163.1 3162574 3163074 R COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; NADH dehydrogenase subunit E complement(3162574..3163074) Escherichia coli APEC O78 14483017 YP_007382216.1 CDS APECO78_15245 NC_020163.1 3163077 3164879 R COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; NADH:ubiquinone oxidoreductase subunit C/D complement(3163077..3164879) Escherichia coli APEC O78 14483018 YP_007382217.1 CDS APECO78_15250 NC_020163.1 3164973 3165635 R COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B complement(3164973..3165635) Escherichia coli APEC O78 14483019 YP_007382218.1 CDS APECO78_15255 NC_020163.1 3165651 3166094 R COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH:ubiquinone oxidoreductase subunit A complement(3165651..3166094) Escherichia coli APEC O78 14483020 YP_007382219.1 CDS APECO78_15260 NC_020163.1 3166725 3167663 R COG0583 Transcriptional regulator; DNA-binding transcriptional repressor LrhA complement(3166725..3167663) Escherichia coli APEC O78 14483021 YP_007382220.1 CDS APECO78_15265 NC_020163.1 3168583 3169800 D COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase AlaT 3168583..3169800 Escherichia coli APEC O78 14483022 YP_007382221.1 CDS APECO78_15270 NC_020163.1 3169884 3170483 D COG1896 Predicted hydrolases of HD superfamily; 5'-nucleotidase 3169884..3170483 Escherichia coli APEC O78 14483023 YP_007382222.1 CDS APECO78_15275 NC_020163.1 3170542 3172374 R COG0471 Di- and tricarboxylate transporters; transporter complement(3170542..3172374) Escherichia coli APEC O78 14483024 YP_007382223.1 CDS APECO78_15280 NC_020163.1 3172461 3173111 R COG0637 Predicted phosphatase/phosphohexomutase; phosphatase complement(3172461..3173111) Escherichia coli APEC O78 14483025 YP_007382224.1 CDS APECO78_15285 NC_020163.1 3173122 3173616 R COG3013 Uncharacterized conserved protein; hypothetical protein complement(3173122..3173616) Escherichia coli APEC O78 14483026 YP_007382225.1 CDS APECO78_15290 NC_020163.1 3173699 3174154 R COG3092 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3173699..3174154) Escherichia coli APEC O78 14483027 YP_007382226.1 CDS APECO78_15295 NC_020163.1 3174223 3174354 R hypothetical protein complement(3174223..3174354) Escherichia coli APEC O78 14483028 YP_007382227.1 CDS APECO78_15300 NC_020163.1 3174492 3175694 D COG0282 Acetate kinase; acetate kinase A/propionate kinase 2 3174492..3175694 Escherichia coli APEC O78 14483029 YP_007382228.1 CDS APECO78_15305 NC_020163.1 3175769 3177913 D COG0857 BioD-like N-terminal domain of phosphotransacetylase; phosphate acetyltransferase 3175769..3177913 Escherichia coli APEC O78 14483030 YP_007382229.1 CDS APECO78_15310 NC_020163.1 3178103 3179623 D COG1288 Predicted membrane protein; hypothetical protein 3178103..3179623 Escherichia coli APEC O78 14483031 YP_007382230.1 CDS APECO78_15315 NC_020163.1 3179656 3180198 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase YfcD complement(3179656..3180198) Escherichia coli APEC O78 14483032 YP_007382231.1 CDS APECO78_15320 NC_020163.1 3180256 3180807 R COG0622 Predicted phosphoesterase; putative phosphodiesterase complement(3180256..3180807) Escherichia coli APEC O78 14483033 YP_007382232.1 CDS APECO78_15325 NC_020163.1 3180863 3181507 R COG0625 Glutathione S-transferase; hypothetical protein complement(3180863..3181507) Escherichia coli APEC O78 14483034 YP_007382233.1 CDS APECO78_15330 NC_020163.1 3181643 3182290 D COG0625 Glutathione S-transferase; GSH-dependent disulfide bond oxidoreductase 3181643..3182290 Escherichia coli APEC O78 14483035 YP_007382234.1 CDS APECO78_15335 NC_020163.1 3182347 3182709 D COG1539 Dihydroneopterin aldolase; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3182347..3182709 Escherichia coli APEC O78 14483036 YP_007382235.1 CDS APECO78_15340 NC_020163.1 3182730 3183623 D COG1090 Predicted nucleoside-diphosphate sugar epimerase; hypothetical protein 3182730..3183623 Escherichia coli APEC O78 14483037 YP_007382236.1 CDS APECO78_15345 NC_020163.1 3183671 3184561 R putative transposase complement(3183671..3184561) Escherichia coli APEC O78 14483038 YP_007382237.1 CDS APECO78_15350 NC_020163.1 3184758 3185531 R COG4598 ABC-type histidine transport system, ATPase component; histidine/lysine/arginine/ornithine transporter subunit complement(3184758..3185531) Escherichia coli APEC O78 14483039 YP_007382238.1 CDS APECO78_15355 NC_020163.1 3185539 3186255 R COG4160 ABC-type arginine/histidine transport system, permease component; histidine/lysine/arginine/ornithine ABC transporter permease HisM complement(3185539..3186255) Escherichia coli APEC O78 14483040 YP_007382239.1 CDS APECO78_15360 NC_020163.1 3186252 3186938 R COG4215 ABC-type arginine transport system, permease component; histidine/lysine/arginine/ornithine ABC transporter permease HisQ complement(3186252..3186938) Escherichia coli APEC O78 14483041 YP_007382240.1 CDS APECO78_15365 NC_020163.1 3187028 3187810 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; histidine ABC transporter substrate-binding protein HisJ complement(3187028..3187810) Escherichia coli APEC O78 14483042 YP_007382241.1 CDS APECO78_15370 NC_020163.1 3188031 3188813 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; ABC transporter lysine/arginine/ornithine binding periplasmic protein complement(3188031..3188813) Escherichia coli APEC O78 14483043 YP_007382242.1 CDS APECO78_15375 NC_020163.1 3189079 3189648 R COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(3189079..3189648) Escherichia coli APEC O78 14483044 YP_007382243.1 CDS APECO78_15380 NC_020163.1 3189743 3191260 R COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; amidophosphoribosyltransferase complement(3189743..3191260) Escherichia coli APEC O78 14483045 YP_007382244.1 CDS APECO78_15385 NC_020163.1 3191297 3191785 R COG1286 Uncharacterized membrane protein, required for colicin V production; colicin V production protein complement(3191297..3191785) Escherichia coli APEC O78 14483046 YP_007382245.1 CDS APECO78_15390 NC_020163.1 3192044 3192706 R COG3147 Uncharacterized protein conserved in bacteria; DedD protein complement(3192044..3192706) Escherichia coli APEC O78 14483047 YP_007382246.1 CDS APECO78_15395 NC_020163.1 3192696 3193964 R COG0285 Folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(3192696..3193964) Escherichia coli APEC O78 14483048 YP_007382247.1 CDS APECO78_15400 NC_020163.1 3194034 3194948 R COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta complement(3194034..3194948) Escherichia coli APEC O78 14483049 YP_007382248.1 CDS APECO78_15405 NC_020163.1 3195104 3195763 R COG0586 Uncharacterized membrane-associated protein; hypothetical protein complement(3195104..3195763) Escherichia coli APEC O78 14483050 YP_007382249.1 CDS truA NC_020163.1 3195846 3196658 R COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A complement(3195846..3196658) Escherichia coli APEC O78 14483051 YP_007382250.1 CDS APECO78_15415 NC_020163.1 3196658 3197671 R COG0136 Aspartate-semialdehyde dehydrogenase; semialdehyde dehydrogenase complement(3196658..3197671) Escherichia coli APEC O78 14483052 YP_007382251.1 CDS APECO78_15420 NC_020163.1 3197737 3198873 R COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; erythronate-4-phosphate dehydrogenase PdxB complement(3197737..3198873) Escherichia coli APEC O78 14483053 YP_007382252.1 CDS flk NC_020163.1 3198972 3199967 D flagella biosynthesis regulator 3198972..3199967 Escherichia coli APEC O78 14483054 YP_007382253.1 CDS APECO78_15430 NC_020163.1 3199964 3201142 R COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily protein complement(3199964..3201142) Escherichia coli APEC O78 14483055 YP_007382254.1 CDS APECO78_15435 NC_020163.1 3201426 3202646 R COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase I complement(3201426..3202646) Escherichia coli APEC O78 14483056 YP_007382255.1 CDS mnmC NC_020163.1 3202805 3204811 D COG4121 Uncharacterized conserved protein; bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase 3202805..3204811 Escherichia coli APEC O78 14483057 YP_007382256.1 CDS APECO78_15445 NC_020163.1 3204932 3205210 R hypothetical protein complement(3204932..3205210) Escherichia coli APEC O78 14483058 YP_007382257.1 CDS APECO78_15450 NC_020163.1 3205244 3205792 R COG3101 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3205244..3205792) Escherichia coli APEC O78 14483059 YP_007382258.1 CDS APECO78_15455 NC_020163.1 3205792 3206601 R COG0730 Predicted permeases; hypothetical protein complement(3205792..3206601) Escherichia coli APEC O78 14483060 YP_007382259.1 CDS mepA NC_020163.1 3206601 3207425 R COG3770 Murein endopeptidase; penicillin-insensitive murein endopeptidase complement(3206601..3207425) Escherichia coli APEC O78 14483061 YP_007382260.1 CDS APECO78_15465 NC_020163.1 3207429 3208514 R COG0082 Chorismate synthase; chorismate synthase complement(3207429..3208514) Escherichia coli APEC O78 14483062 YP_007382261.1 CDS APECO78_15470 NC_020163.1 3208549 3209481 R COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(3208549..3209481) Escherichia coli APEC O78 14483063 YP_007382262.1 CDS APECO78_15475 NC_020163.1 3209647 3210198 D COG2840 Uncharacterized protein conserved in bacteria; hypothetical protein 3209647..3210198 Escherichia coli APEC O78 14483064 YP_007382263.1 CDS APECO78_15480 NC_020163.1 3210320 3210598 R hypothetical protein complement(3210320..3210598) Escherichia coli APEC O78 14483065 YP_007382264.1 CDS APECO78_15485 NC_020163.1 3211179 3211703 R COG3539 P pilus assembly protein, pilin FimA; fimbrial subunit protein complement(3211179..3211703) Escherichia coli APEC O78 14483066 YP_007382265.1 CDS APECO78_15490 NC_020163.1 3211700 3212170 R fimbrial subunit protein complement(3211700..3212170) Escherichia coli APEC O78 14483067 YP_007382266.1 CDS APECO78_15495 NC_020163.1 3212167 3212673 R minor fimbrial subunit complement(3212167..3212673) Escherichia coli APEC O78 14483068 YP_007382267.1 CDS APECO78_15500 NC_020163.1 3212690 3213442 R COG3121 P pilus assembly protein, chaperone PapD; chaperone complement(3212690..3213442) Escherichia coli APEC O78 14483069 YP_007382268.1 CDS APECO78_15505 NC_020163.1 3213462 3216107 R COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StfC complement(3213462..3216107) Escherichia coli APEC O78 14483070 YP_007382269.1 CDS APECO78_15510 NC_020163.1 3216189 3216752 R fimbrial-like protein complement(3216189..3216752) Escherichia coli APEC O78 14483071 YP_007382270.1 CDS APECO78_15515 NC_020163.1 3217436 3217921 R COG2062 Phosphohistidine phosphatase SixA; phosphohistidine phosphatase complement(3217436..3217921) Escherichia coli APEC O78 14483072 YP_007382271.1 CDS fadJ NC_020163.1 3218124 3220268 R COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha complement(3218124..3220268) Escherichia coli APEC O78 14483073 YP_007382272.1 CDS fadI NC_020163.1 3220268 3221578 R COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase complement(3220268..3221578) Escherichia coli APEC O78 14483074 YP_007382273.1 CDS APECO78_15530 NC_020163.1 3221759 3222043 R COG3691 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3221759..3222043) Escherichia coli APEC O78 14483075 YP_007382274.1 CDS APECO78_15535 NC_020163.1 3222409 3223755 D COG2067 Long-chain fatty acid transport protein; long-chain fatty acid outer membrane transporter 3222409..3223755 Escherichia coli APEC O78 14483076 YP_007382275.1 CDS APECO78_15540 NC_020163.1 3224123 3225181 D hypothetical protein 3224123..3225181 Escherichia coli APEC O78 14483077 YP_007382276.1 CDS APECO78_15545 NC_020163.1 3225363 3226118 R COG2853 Surface lipoprotein; ABC transporter outer membrane lipoprotein complement(3225363..3226118) Escherichia coli APEC O78 14483078 YP_007382277.1 CDS APECO78_15550 NC_020163.1 3226413 3227345 D COG2116 Formate/nitrite family of transporters; hypothetical protein 3226413..3227345 Escherichia coli APEC O78 14483079 YP_007382278.1 CDS lacY NC_020163.1 3227937 3228806 R COG0477 Permeases of the major facilitator superfamily; galactoside permease complement(3227937..3228806) Escherichia coli APEC O78 14484631 YP_007382279.1 CDS lacY NC_020163.1 3228888 3229184 R COG0477 Permeases of the major facilitator superfamily; galactoside permease complement(3228888..3229184) Escherichia coli APEC O78 14483081 YP_007382280.1 CDS APECO78_15565 NC_020163.1 3229256 3230170 R COG0524 Sugar kinases, ribokinase family; aminoimidazole riboside kinase complement(3229256..3230170) Escherichia coli APEC O78 14483082 YP_007382281.1 CDS APECO78_15570 NC_020163.1 3230386 3231819 D COG1621 Beta-fructosidases (levanase/invertase); sucrose-6-phosphate hydrolase 3230386..3231819 Escherichia coli APEC O78 14483083 YP_007382282.1 CDS APECO78_15575 NC_020163.1 3231827 3232822 R COG1609 Transcriptional regulators; sucrose operon repressor complement(3231827..3232822) Escherichia coli APEC O78 14483084 YP_007382283.1 CDS APECO78_15580 NC_020163.1 3233065 3233283 D COG2610 H+/gluconate symporter and related permeases; permease DsdX 3233065..3233283 Escherichia coli APEC O78 14483085 YP_007382284.1 CDS APECO78_15585 NC_020163.1 3233301 3234629 D COG3048 D-serine dehydratase; D-serine dehydratase 3233301..3234629 Escherichia coli APEC O78 14483086 YP_007382285.1 CDS APECO78_15590 NC_020163.1 3234737 3236275 R COG0477 Permeases of the major facilitator superfamily; putative multidrug efflux system complement(3234737..3236275) Escherichia coli APEC O78 14483087 YP_007382286.1 CDS APECO78_15595 NC_020163.1 3236275 3237438 R COG1566 Multidrug resistance efflux pump; EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component complement(3236275..3237438) Escherichia coli APEC O78 14483088 YP_007382287.1 CDS APECO78_15600 NC_020163.1 3237854 3238468 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator EvgA 3237854..3238468 Escherichia coli APEC O78 14483089 YP_007382288.1 CDS APECO78_15605 NC_020163.1 3238473 3242066 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hybrid sensory histidine kinase in two-component regulatory system with EvgA 3238473..3242066 Escherichia coli APEC O78 14483090 YP_007382289.1 CDS APECO78_15610 NC_020163.1 3242122 3243267 R COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; hypothetical protein complement(3242122..3243267) Escherichia coli APEC O78 14483091 YP_007382290.1 CDS APECO78_15615 NC_020163.1 3243341 3244285 R COG0679 Predicted permeases; transporter YfdV complement(3243341..3244285) Escherichia coli APEC O78 14483092 YP_007382291.1 CDS APECO78_15620 NC_020163.1 3244355 3246049 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; oxalyl-CoA decarboxylase complement(3244355..3246049) Escherichia coli APEC O78 14483093 YP_007382292.1 CDS APECO78_15625 NC_020163.1 3246103 3247353 R COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; formyl-coenzyme A transferase complement(3246103..3247353) Escherichia coli APEC O78 14483094 YP_007382293.1 CDS APECO78_15630 NC_020163.1 3247866 3248498 R hypothetical protein complement(3247866..3248498) Escherichia coli APEC O78 14483095 YP_007382294.1 CDS APECO78_15635 NC_020163.1 3248794 3249069 D lipoprotein 3248794..3249069 Escherichia coli APEC O78 14483096 YP_007382295.1 CDS APECO78_15640 NC_020163.1 3249146 3249388 R hypothetical protein complement(3249146..3249388) Escherichia coli APEC O78 14483097 YP_007382296.1 CDS APECO78_15645 NC_020163.1 3249741 3250661 D COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3249741..3250661 Escherichia coli APEC O78 14483098 YP_007382297.1 CDS APECO78_15650 NC_020163.1 3251153 3252391 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase complement(3251153..3252391) Escherichia coli APEC O78 14483099 YP_007382298.1 CDS APECO78_15655 NC_020163.1 3252768 3254465 D COG3275 Putative regulator of cell autolysis; hypothetical protein 3252768..3254465 Escherichia coli APEC O78 14483100 YP_007382299.1 CDS APECO78_15660 NC_020163.1 3254480 3255214 D COG3279 Response regulator of the LytR/AlgR family; putative response regulator in two-component system with YpdA 3254480..3255214 Escherichia coli APEC O78 14483101 YP_007382300.1 CDS APECO78_15665 NC_020163.1 3255227 3256084 D COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding protein, ARAC-type 3255227..3256084 Escherichia coli APEC O78 14483102 YP_007382301.1 CDS APECO78_15680 NC_020163.1 3258607 3259644 R COG1363 Cellulase M and related proteins; exoaminopeptidase complement(3258607..3259644) Escherichia coli APEC O78 14483103 YP_007382302.1 CDS APECO78_15685 NC_020163.1 3259644 3260612 R COG0006 Xaa-Pro aminopeptidase; aminopeptidase complement(3259644..3260612) Escherichia coli APEC O78 14483104 YP_007382303.1 CDS APECO78_15690 NC_020163.1 3260576 3260728 R aminopeptidase complement(3260576..3260728) Escherichia coli APEC O78 14483105 YP_007382304.1 CDS APECO78_15695 NC_020163.1 3260743 3261990 R COG1299 Phosphotransferase system, fructose-specific IIC component; fructose-like permease IIC component complement(3260743..3261990) Escherichia coli APEC O78 14483106 YP_007382305.1 CDS APECO78_15700 NC_020163.1 3262012 3262338 R COG1445 Phosphotransferase system fructose-specific component IIB; putative PTS system IIB component ypdH complement(3262012..3262338) Escherichia coli APEC O78 14483107 YP_007382306.1 CDS APECO78_15705 NC_020163.1 3262557 3263522 R COG0837 Glucokinase; glucokinase complement(3262557..3263522) Escherichia coli APEC O78 14483108 YP_007382307.1 CDS APECO78_15710 NC_020163.1 3263726 3264982 D ion channel protein 3263726..3264982 Escherichia coli APEC O78 14483109 YP_007382308.1 CDS APECO78_15715 NC_020163.1 3265097 3265423 D hypothetical protein 3265097..3265423 Escherichia coli APEC O78 14483110 YP_007382309.1 CDS APECO78_15720 NC_020163.1 3265564 3266802 R COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; manganese transport protein MntH complement(3265564..3266802) Escherichia coli APEC O78 14483111 YP_007382310.1 CDS APECO78_15725 NC_020163.1 3267138 3268340 D COG1972 Nucleoside permease; nucleoside (except guanosine) transporter NupC 3267138..3268340 Escherichia coli APEC O78 14483112 YP_007382311.1 CDS APECO78_15730 NC_020163.1 3268390 3270579 R COG2199 FOG: GGDEF domain; diguanylate cyclase/phosphodiesterase complement(3268390..3270579) Escherichia coli APEC O78 14483113 YP_007382312.1 CDS APECO78_15735 NC_020163.1 3271198 3271557 D hypothetical protein 3271198..3271557 Escherichia coli APEC O78 14484633 YP_007382313.1 CDS APECO78_15740 NC_020163.1 3271559 3271951 D COG1396 Predicted transcriptional regulators; DNA-binding transcriptional regulator 3271559..3271951 Escherichia coli APEC O78 14483115 YP_007382314.1 CDS APECO78_15745 NC_020163.1 3272003 3273418 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA synthetase complement(3272003..3273418) Escherichia coli APEC O78 14483116 YP_007382315.1 CDS APECO78_15750 NC_020163.1 3274339 3275223 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator XapR complement(3274339..3275223) Escherichia coli APEC O78 14484637 YP_007382316.1 CDS APECO78_15755 NC_020163.1 3275264 3275422 R hypothetical protein complement(3275264..3275422) Escherichia coli APEC O78 14483118 YP_007382317.1 CDS APECO78_15760 NC_020163.1 3275475 3276731 R COG0477 Permeases of the major facilitator superfamily; xanthosine transporter complement(3275475..3276731) Escherichia coli APEC O78 14483119 YP_007382318.1 CDS APECO78_15765 NC_020163.1 3276791 3277624 R COG0005 Purine nucleoside phosphorylase; purine nucleoside phosphorylase complement(3276791..3277624) Escherichia coli APEC O78 14483120 YP_007382319.1 CDS APECO78_15770 NC_020163.1 3277873 3278637 D hypothetical protein 3277873..3278637 Escherichia coli APEC O78 14483121 YP_007382320.1 CDS APECO78_15775 NC_020163.1 3278676 3279602 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(3278676..3279602) Escherichia coli APEC O78 14483122 YP_007382321.1 CDS APECO78_15780 NC_020163.1 3279692 3280690 D COG0385 Predicted Na+-dependent transporter; inner membrane protein 3279692..3280690 Escherichia coli APEC O78 14483123 YP_007382322.1 CDS APECO78_15785 NC_020163.1 3280687 3280905 R COG3530 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3280687..3280905) Escherichia coli APEC O78 14483124 YP_007382323.1 CDS ligA NC_020163.1 3280907 3282922 R COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA complement(3280907..3282922) Escherichia coli APEC O78 14483125 YP_007382324.1 CDS APECO78_15795 NC_020163.1 3282993 3283979 R COG3115 Cell division protein; cell division protein ZipA complement(3282993..3283979) Escherichia coli APEC O78 14483126 YP_007382325.1 CDS APECO78_15800 NC_020163.1 3284209 3284970 D COG2981 Uncharacterized protein involved in cysteine biosynthesis; sulfate transport protein CysZ 3284209..3284970 Escherichia coli APEC O78 14483127 YP_007382326.1 CDS APECO78_15805 NC_020163.1 3285155 3286126 D COG0031 Cysteine synthase; cysteine synthase A 3285155..3286126 Escherichia coli APEC O78 14483128 YP_007382327.1 CDS APECO78_15810 NC_020163.1 3286510 3286767 D COG1925 Phosphotransferase system, HPr-related proteins; phosphocarrier protein ptsH 3286510..3286767 Escherichia coli APEC O78 14483129 YP_007382328.1 CDS APECO78_15815 NC_020163.1 3286812 3288539 D COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); phosphoenolpyruvate-protein phosphotransferase 3286812..3288539 Escherichia coli APEC O78 14483130 YP_007382329.1 CDS APECO78_15820 NC_020163.1 3288580 3289089 D COG2190 Phosphotransferase system IIA components; PTS system glucose-specific transporter 3288580..3289089 Escherichia coli APEC O78 14483131 YP_007382330.1 CDS pdxK NC_020163.1 3289131 3289982 R COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase complement(3289131..3289982) Escherichia coli APEC O78 14483132 YP_007382331.1 CDS APECO78_15830 NC_020163.1 3290087 3290455 D hypothetical protein 3290087..3290455 Escherichia coli APEC O78 14483133 YP_007382332.1 CDS cysM NC_020163.1 3290458 3291369 R COG0031 Cysteine synthase; cysteine synthase B complement(3290458..3291369) Escherichia coli APEC O78 14483134 YP_007382333.1 CDS APECO78_15840 NC_020163.1 3291503 3292600 R COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; sulfate/thiosulfate transporter subunit complement(3291503..3292600) Escherichia coli APEC O78 14483135 YP_007382334.1 CDS cysW NC_020163.1 3292590 3293465 R COG4208 ABC-type sulfate transport system, permease component; sulfate/thiosulfate transporter permease subunit complement(3292590..3293465) Escherichia coli APEC O78 14483136 YP_007382335.1 CDS APECO78_15850 NC_020163.1 3293465 3294298 R COG0555 ABC-type sulfate transport system, permease component; sulfate/thiosulfate transporter subunit complement(3293465..3294298) Escherichia coli APEC O78 14483137 YP_007382336.1 CDS APECO78_15855 NC_020163.1 3294298 3295314 R COG4150 ABC-type sulfate transport system, periplasmic component; thiosulfate transporter subunit complement(3294298..3295314) Escherichia coli APEC O78 14483138 YP_007382337.1 CDS APECO78_15860 NC_020163.1 3295485 3296276 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase complement(3295485..3296276) Escherichia coli APEC O78 14483139 YP_007382338.1 CDS APECO78_15865 NC_020163.1 3296405 3297262 R COG1737 Transcriptional regulators; transcriptional regulator MurR complement(3296405..3297262) Escherichia coli APEC O78 14483140 YP_007382339.1 CDS murQ NC_020163.1 3297426 3298322 D COG2103 Predicted sugar phosphate isomerase; N-acetylmuramic acid-6-phosphate etherase 3297426..3298322 Escherichia coli APEC O78 14483141 YP_007382340.1 CDS murP NC_020163.1 3298326 3299750 D COG1264 Phosphotransferase system IIB components; PTS system N-acetylmuramic acid transporter subunits IIBC 3298326..3299750 Escherichia coli APEC O78 14483142 YP_007382341.1 CDS APECO78_15880 NC_020163.1 3299755 3301059 D COG1680 Beta-lactamase class C and other penicillin binding proteins; periplasmic esterase 3299755..3301059 Escherichia coli APEC O78 14483143 YP_007382342.1 CDS APECO78_15885 NC_020163.1 3301117 3302016 R COG2837 Predicted iron-dependent peroxidase; dyp-type peroxidase family protein complement(3301117..3302016) Escherichia coli APEC O78 14483144 YP_007382343.1 CDS APECO78_15890 NC_020163.1 3302112 3302687 R RpoE-regulated lipoprotein complement(3302112..3302687) Escherichia coli APEC O78 14483145 YP_007382344.1 CDS APECO78_15895 NC_020163.1 3302748 3303197 R hypothetical protein complement(3302748..3303197) Escherichia coli APEC O78 14483146 YP_007382345.1 CDS APECO78_15900 NC_020163.1 3303184 3303609 R COG0456 Acetyltransferases; acetyltransferase complement(3303184..3303609) Escherichia coli APEC O78 14483147 YP_007382346.1 CDS APECO78_15905 NC_020163.1 3303823 3304692 D COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase I 3303823..3304692 Escherichia coli APEC O78 14483148 YP_007382347.1 CDS APECO78_15910 NC_020163.1 3304696 3305595 D COG0408 Coproporphyrinogen III oxidase; coproporphyrinogen III oxidase 3304696..3305595 Escherichia coli APEC O78 14483149 YP_007382348.1 CDS APECO78_15915 NC_020163.1 3305601 3306653 R COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator EutR complement(3305601..3306653) Escherichia coli APEC O78 14483150 YP_007382349.1 CDS APECO78_15920 NC_020163.1 3306699 3307199 R COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; carboxysome structural protein EutK complement(3306699..3307199) Escherichia coli APEC O78 14483151 YP_007382350.1 CDS APECO78_15925 NC_020163.1 3307212 3307871 R COG4816 Ethanolamine utilization protein; ethanolamine utilization protein EutL complement(3307212..3307871) Escherichia coli APEC O78 14483152 YP_007382351.1 CDS APECO78_15930 NC_020163.1 3307881 3308768 R COG4302 Ethanolamine ammonia-lyase, small subunit; ethanolamine ammonia-lyase small subunit complement(3307881..3308768) Escherichia coli APEC O78 14483153 YP_007382352.1 CDS APECO78_15935 NC_020163.1 3308789 3310150 R COG4303 Ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia-lyase, large subunit complement(3308789..3310150) Escherichia coli APEC O78 14483154 YP_007382353.1 CDS eutA NC_020163.1 3310162 3310455 R COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition; reactivating factor for ethanolamine ammonia lyase complement(3310162..3310455) Escherichia coli APEC O78 14483155 YP_007382354.1 CDS eutA NC_020163.1 3310504 3311565 R COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition; reactivating factor for ethanolamine ammonia lyase complement(3310504..3311565) Escherichia coli APEC O78 14483156 YP_007382355.1 CDS APECO78_15950 NC_020163.1 3311562 3312788 R COG3192 Ethanolamine utilization protein; ethanolamine utilization protein EutH complement(3311562..3312788) Escherichia coli APEC O78 14483157 YP_007382356.1 CDS APECO78_15955 NC_020163.1 3312905 3314092 R COG1454 Alcohol dehydrogenase, class IV; ethanol dehydrogenase EutG complement(3312905..3314092) Escherichia coli APEC O78 14483158 YP_007382357.1 CDS APECO78_15960 NC_020163.1 3314082 3314918 R COG4820 Ethanolamine utilization protein, possible chaperonin; ethanolamine utilization protein EutJ complement(3314082..3314918) Escherichia coli APEC O78 14483159 YP_007382358.1 CDS APECO78_15965 NC_020163.1 3314929 3316332 R COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase EutE complement(3314929..3316332) Escherichia coli APEC O78 14483160 YP_007382359.1 CDS APECO78_15970 NC_020163.1 3316344 3316631 R COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; ethanolamine catabolic microcompartment shell protein EutN complement(3316344..3316631) Escherichia coli APEC O78 14483161 YP_007382360.1 CDS APECO78_15975 NC_020163.1 3316738 3317031 R COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; carboxysome structural protein EutM complement(3316738..3317031) Escherichia coli APEC O78 14483162 YP_007382361.1 CDS APECO78_15980 NC_020163.1 3317070 3317888 R COG0280 Phosphotransacetylase; phosphotransacetylase complement(3317070..3317888) Escherichia coli APEC O78 14483163 YP_007382362.1 CDS eutD NC_020163.1 3317889 3318086 R COG0280 Phosphotransacetylase; phosphotransacetylase complement(3317889..3318086) Escherichia coli APEC O78 14483164 YP_007382363.1 CDS APECO78_15990 NC_020163.1 3318083 3318886 R COG4812 Ethanolamine utilization cobalamin adenosyltransferase; ethanolamine utilization cobalamin adenosyltransferase complement(3318083..3318886) Escherichia coli APEC O78 14483165 YP_007382364.1 CDS APECO78_15995 NC_020163.1 3318883 3319584 R COG4766 Ethanolamine utilization protein; ethanolamine utilization protein EutQ complement(3318883..3319584) Escherichia coli APEC O78 14483166 YP_007382365.1 CDS APECO78_16000 NC_020163.1 3319559 3320038 R COG4917 Ethanolamine utilization protein; ethanolamine utilization protein EutP complement(3319559..3320038) Escherichia coli APEC O78 14483167 YP_007382366.1 CDS APECO78_16005 NC_020163.1 3320051 3320386 R COG4810 Ethanolamine utilization protein; carboxysome structural protein EutS complement(3320051..3320386) Escherichia coli APEC O78 14483168 YP_007382367.1 CDS APECO78_16010 NC_020163.1 3320679 3322958 R COG0281 Malic enzyme; bifunctional malic enzyme oxidoreductase/phosphotransacetylase complement(3320679..3322958) Escherichia coli APEC O78 14483169 YP_007382368.1 CDS APECO78_16015 NC_020163.1 3323247 3324197 D COG0176 Transaldolase; transaldolase A 3323247..3324197 Escherichia coli APEC O78 14483170 YP_007382369.1 CDS APECO78_16020 NC_020163.1 3324217 3326220 D COG0021 Transketolase; transketolase 3324217..3326220 Escherichia coli APEC O78 14483171 YP_007382370.1 CDS APECO78_16025 NC_020163.1 3326316 3327359 R COG1088 dTDP-D-glucose 4,6-dehydratase; hypothetical protein complement(3326316..3327359) Escherichia coli APEC O78 14483172 YP_007382371.1 CDS APECO78_16030 NC_020163.1 3327485 3328060 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; GDP-mannose pyrophosphatase NudK complement(3327485..3328060) Escherichia coli APEC O78 14483173 YP_007382372.1 CDS APECO78_16035 NC_020163.1 3328128 3330107 R COG1142 Fe-S-cluster-containing hydrogenase components 2; oxidoreductase Fe-S binding subunit complement(3328128..3330107) Escherichia coli APEC O78 14483174 YP_007382373.1 CDS APECO78_16040 NC_020163.1 3330312 3332012 D COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarQ 3330312..3332012 Escherichia coli APEC O78 14483175 YP_007382374.1 CDS APECO78_16045 NC_020163.1 3332176 3335289 D COG0841 Cation/multidrug efflux pump; aminoglycoside/multidrug efflux system 3332176..3335289 Escherichia coli APEC O78 14483176 YP_007382375.1 CDS APECO78_16050 NC_020163.1 3335828 3336184 D COG1393 Arsenate reductase and related proteins, glutaredoxin family; reductase 3335828..3336184 Escherichia coli APEC O78 14483177 YP_007382376.1 CDS APECO78_16055 NC_020163.1 3336188 3337315 D COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase 3336188..3337315 Escherichia coli APEC O78 14483178 YP_007382377.1 CDS APECO78_16060 NC_020163.1 3337343 3337543 D hypothetical protein 3337343..3337543 Escherichia coli APEC O78 14483179 YP_007382378.1 CDS APECO78_16065 NC_020163.1 3337653 3338351 R COG0400 Predicted esterase; hydrolase complement(3337653..3338351) Escherichia coli APEC O78 14483180 YP_007382379.1 CDS APECO78_16070 NC_020163.1 3338425 3340440 R COG1444 Predicted P-loop ATPase fused to an acetyltransferase; methionine tRNA cytidine acetyltransferase complement(3338425..3340440) Escherichia coli APEC O78 14483181 YP_007382380.1 CDS APECO78_16075 NC_020163.1 3340455 3341318 R COG2321 Predicted metalloprotease; hypothetical protein complement(3340455..3341318) Escherichia coli APEC O78 14483182 YP_007382381.1 CDS APECO78_16080 NC_020163.1 3341465 3341863 R COG1487 Predicted nucleic acid-binding protein, contains PIN domain; plasmid maintenance protein complement(3341465..3341863) Escherichia coli APEC O78 14483183 YP_007382382.1 CDS APECO78_16085 NC_020163.1 3341863 3342090 R COG4456 Virulence-associated protein and related proteins; putative toxin of the MvpT-MvpA toxin-antitoxin system complement(3341863..3342090) Escherichia coli APEC O78 14483184 YP_007382383.1 CDS APECO78_16090 NC_020163.1 3342244 3342957 R COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; phosphoribosylaminoimidazole-succinocarboxamide complement(3342244..3342957) Escherichia coli APEC O78 14483185 YP_007382384.1 CDS APECO78_16095 NC_020163.1 3343008 3343259 D hypothetical protein 3343008..3343259 Escherichia coli APEC O78 14483186 YP_007382385.1 CDS APECO78_16100 NC_020163.1 3343170 3344204 R COG3317 Uncharacterized lipoprotein; Lipoprotein-34 complement(3343170..3344204) Escherichia coli APEC O78 14483187 YP_007382386.1 CDS APECO78_16105 NC_020163.1 3344221 3345099 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase complement(3344221..3345099) Escherichia coli APEC O78 14483188 YP_007382387.1 CDS APECO78_16110 NC_020163.1 3345245 3345817 D COG2716 Glycine cleavage system regulatory protein; glycine cleavage system transcriptional repressor 3345245..3345817 Escherichia coli APEC O78 14483189 YP_007382388.1 CDS APECO78_16115 NC_020163.1 3345817 3346287 D COG1225 Peroxiredoxin; thioredoxin-dependent thiol peroxidase 3345817..3346287 Escherichia coli APEC O78 14483190 YP_007382389.1 CDS APECO78_16120 NC_020163.1 3346540 3347157 D COG1142 Fe-S-cluster-containing hydrogenase components 2; hydrogenase 4 Fe-S subunit 3346540..3347157 Escherichia coli APEC O78 14483191 YP_007382390.1 CDS APECO78_16125 NC_020163.1 3347157 3347828 D COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; hydrogenase 4 subunit B 3347157..3347828 Escherichia coli APEC O78 14483192 YP_007382391.1 CDS APECO78_16130 NC_020163.1 3347783 3349174 D COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; hydrogenase 4 subunit B 3347783..3349174 Escherichia coli APEC O78 14483193 YP_007382392.1 CDS hyfC NC_020163.1 3349185 3350132 D COG0650 Formate hydrogenlyase subunit 4; hydrogenase 4 membrane subunit 3349185..3350132 Escherichia coli APEC O78 14483194 YP_007382393.1 CDS APECO78_16140 NC_020163.1 3350149 3350979 D COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; hydrogenase 4 subunit D 3350149..3350979 Escherichia coli APEC O78 14483195 YP_007382394.1 CDS APECO78_16145 NC_020163.1 3351015 3351380 D COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; hydrogenase 4 subunit D 3351015..3351380 Escherichia coli APEC O78 14483196 YP_007382395.1 CDS APECO78_16150 NC_020163.1 3351392 3352042 D COG4237 Hydrogenase 4 membrane component (E); hydrogenase 4 membrane subunit 3351392..3352042 Escherichia coli APEC O78 14483197 YP_007382396.1 CDS APECO78_16155 NC_020163.1 3352047 3353627 D COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; hydrogenase 4 subunit F 3352047..3353627 Escherichia coli APEC O78 14483198 YP_007382397.1 CDS APECO78_16160 NC_020163.1 3353617 3355284 D COG3262 Ni,Fe-hydrogenase III component G; hydrogenase 4 subunit 3353617..3355284 Escherichia coli APEC O78 14483199 YP_007382398.1 CDS APECO78_16165 NC_020163.1 3355294 3355839 D COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); hydrogenase 4 subunit H 3355294..3355839 Escherichia coli APEC O78 14483200 YP_007382399.1 CDS APECO78_16170 NC_020163.1 3355836 3356594 D COG3260 Ni,Fe-hydrogenase III small subunit; hydrogenase 4, Fe-S subunit 3355836..3356594 Escherichia coli APEC O78 14483201 YP_007382400.1 CDS APECO78_16175 NC_020163.1 3356587 3357000 D formate hydrogenlyase maturation protein HycH 3356587..3357000 Escherichia coli APEC O78 14483202 YP_007382401.1 CDS APECO78_16180 NC_020163.1 3357030 3359042 D COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; DNA-binding transcriptional activator, formate sensing 3357030..3359042 Escherichia coli APEC O78 14483203 YP_007382402.1 CDS focB NC_020163.1 3359064 3359912 D COG2116 Formate/nitrite family of transporters; formate transporter 3359064..3359912 Escherichia coli APEC O78 14483204 YP_007382403.1 CDS APECO78_16190 NC_020163.1 3359950 3361011 R COG0628 Predicted permease; permease perM complement(3359950..3361011) Escherichia coli APEC O78 14483205 YP_007382404.1 CDS APECO78_16195 NC_020163.1 3361224 3362687 D COG4783 Putative Zn-dependent protease, contains TPR repeats; peptidase, M48 family protein 3361224..3362687 Escherichia coli APEC O78 14483206 YP_007382405.1 CDS APECO78_16200 NC_020163.1 3362708 3363067 D COG1393 Arsenate reductase and related proteins, glutaredoxin family; oxidoreductase 3362708..3363067 Escherichia coli APEC O78 14483207 YP_007382406.1 CDS APECO78_16205 NC_020163.1 3363205 3363951 R COG0593 ATPase involved in DNA replication initiation; DNA replication initiation factor complement(3363205..3363951) Escherichia coli APEC O78 14483208 YP_007382407.1 CDS APECO78_16210 NC_020163.1 3364001 3365290 R COG2233 Xanthine/uracil permeases; uracil transporter complement(3364001..3365290) Escherichia coli APEC O78 14483209 YP_007382408.1 CDS APECO78_16215 NC_020163.1 3365377 3366003 R COG0035 Uracil phosphoribosyltransferase; uracil phosphoribosyltransferase complement(3365377..3366003) Escherichia coli APEC O78 14483210 YP_007382409.1 CDS APECO78_16220 NC_020163.1 3366328 3367365 D COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; phosphoribosylaminoimidazole synthetase 3366328..3367365 Escherichia coli APEC O78 14483211 YP_007382410.1 CDS APECO78_16225 NC_020163.1 3367365 3368003 D COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; phosphoribosylglycinamide formyltransferase 3367365..3368003 Escherichia coli APEC O78 14483212 YP_007382411.1 CDS APECO78_16230 NC_020163.1 3368174 3370240 D COG0855 Polyphosphate kinase; polyphosphate kinase 3368174..3370240 Escherichia coli APEC O78 14483213 YP_007382412.1 CDS APECO78_16235 NC_020163.1 3370245 3371786 D COG0248 Exopolyphosphatase; exopolyphosphatase 3370245..3371786 Escherichia coli APEC O78 14483214 YP_007382413.1 CDS APECO78_16240 NC_020163.1 3371825 3374068 R COG2199 FOG: GGDEF domain; putative inner membrane protein complement(3371825..3374068) Escherichia coli APEC O78 14483215 YP_007382414.1 CDS APECO78_16245 NC_020163.1 3374250 3374402 R hypothetical protein complement(3374250..3374402) Escherichia coli APEC O78 14483216 YP_007382415.1 CDS APECO78_16250 NC_020163.1 3374420 3374611 D hypothetical protein 3374420..3374611 Escherichia coli APEC O78 14483217 YP_007382416.1 CDS APECO78_16255 NC_020163.1 3374922 3375440 D outer membrane lipoprotein 3374922..3375440 Escherichia coli APEC O78 14483218 YP_007382417.1 CDS APECO78_16260 NC_020163.1 3375456 3375995 D hypothetical protein 3375456..3375995 Escherichia coli APEC O78 14483219 YP_007382418.1 CDS guaA NC_020163.1 3376090 3377667 R COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase complement(3376090..3377667) Escherichia coli APEC O78 14483220 YP_007382419.1 CDS APECO78_16270 NC_020163.1 3377736 3379202 R COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase complement(3377736..3379202) Escherichia coli APEC O78 14483221 YP_007382420.1 CDS xseA NC_020163.1 3379364 3380734 D COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 3379364..3380734 Escherichia coli APEC O78 14483222 YP_007382421.1 CDS APECO78_16280 NC_020163.1 3380731 3380946 R COG1933 Archaeal DNA polymerase II, large subunit; hypothetical protein complement(3380731..3380946) Escherichia coli APEC O78 14483223 YP_007382422.1 CDS APECO78_16285 NC_020163.1 3381015 3382487 R COG1160 Predicted GTPases; GTP-binding protein Der complement(3381015..3382487) Escherichia coli APEC O78 14483224 YP_007382423.1 CDS APECO78_16290 NC_020163.1 3382605 3383783 R COG1520 FOG: WD40-like repeat; outer membrane biogenesis protein BamB complement(3382605..3383783) Escherichia coli APEC O78 14483225 YP_007382424.1 CDS APECO78_16295 NC_020163.1 3383794 3384414 R COG2976 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3383794..3384414) Escherichia coli APEC O78 14483226 YP_007382425.1 CDS APECO78_16300 NC_020163.1 3384432 3385706 R COG0124 Histidyl-tRNA synthetase; histidyl-tRNA synthetase complement(3384432..3385706) Escherichia coli APEC O78 14483227 YP_007382426.1 CDS APECO78_16305 NC_020163.1 3385817 3386935 R COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(3385817..3386935) Escherichia coli APEC O78 14483228 YP_007382427.1 CDS APECO78_16310 NC_020163.1 3386962 3387975 R COG1426 Uncharacterized protein conserved in bacteria; putative regulatory protein complement(3386962..3387975) Escherichia coli APEC O78 14483229 YP_007382428.1 CDS APECO78_16315 NC_020163.1 3388260 3389414 R COG0820 Predicted Fe-S-cluster redox enzyme; ribosomal RNA large subunit methyltransferase N complement(3388260..3389414) Escherichia coli APEC O78 14483230 YP_007382429.1 CDS APECO78_16320 NC_020163.1 3389564 3389995 R COG0105 Nucleoside diphosphate kinase; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase complement(3389564..3389995) Escherichia coli APEC O78 14483231 YP_007382430.1 CDS APECO78_16325 NC_020163.1 3390144 3392456 R COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; penicillin-binding protein 1C complement(3390144..3392456) Escherichia coli APEC O78 14483232 YP_007382431.1 CDS APECO78_16330 NC_020163.1 3392457 3397418 R COG2373 Large extracellular alpha-helical protein; hypothetical protein complement(3392457..3397418) Escherichia coli APEC O78 14483233 YP_007382432.1 CDS APECO78_16335 NC_020163.1 3397625 3398470 D COG2897 Rhodanese-related sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 3397625..3398470 Escherichia coli APEC O78 14483234 YP_007382433.1 CDS APECO78_16340 NC_020163.1 3398963 3399739 R enhanced serine sensitivity protein SseB complement(3398963..3399739) Escherichia coli APEC O78 14483235 YP_007382434.1 CDS APECO78_16345 NC_020163.1 3399881 3401164 R COG0260 Leucyl aminopeptidase; aminopeptidase B complement(3399881..3401164) Escherichia coli APEC O78 14483236 YP_007382435.1 CDS APECO78_16350 NC_020163.1 3401342 3401542 R COG2975 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3401342..3401542) Escherichia coli APEC O78 14483237 YP_007382436.1 CDS APECO78_16355 NC_020163.1 3401554 3401889 R COG0633 Ferredoxin; 2Fe-2S ferredoxin complement(3401554..3401889) Escherichia coli APEC O78 14483238 YP_007382437.1 CDS hscA NC_020163.1 3401891 3403741 R COG0443 Molecular chaperone; chaperone protein HscA complement(3401891..3403741) Escherichia coli APEC O78 14483239 YP_007382438.1 CDS APECO78_16365 NC_020163.1 3403758 3404273 R COG1076 DnaJ-domain-containing proteins 1; DnaJ-like molecular chaperone specific for IscU complement(3403758..3404273) Escherichia coli APEC O78 14483240 YP_007382439.1 CDS APECO78_16370 NC_020163.1 3404369 3404692 R COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly protein complement(3404369..3404692) Escherichia coli APEC O78 14483241 YP_007382440.1 CDS APECO78_16375 NC_020163.1 3404709 3405095 R COG0822 NifU homolog involved in Fe-S cluster formation; scaffold protein complement(3404709..3405095) Escherichia coli APEC O78 14483242 YP_007382441.1 CDS APECO78_16380 NC_020163.1 3405123 3406337 R COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase complement(3405123..3406337) Escherichia coli APEC O78 14483243 YP_007382442.1 CDS APECO78_16385 NC_020163.1 3406449 3406937 R COG1959 Predicted transcriptional regulator; DNA-binding transcriptional regulator IscR complement(3406449..3406937) Escherichia coli APEC O78 14483244 YP_007382443.1 CDS APECO78_16390 NC_020163.1 3407238 3407975 R COG0565 rRNA methylase; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ complement(3407238..3407975) Escherichia coli APEC O78 14483245 YP_007382444.1 CDS APECO78_16395 NC_020163.1 3408094 3408897 D COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; inositol monophosphatase 3408094..3408897 Escherichia coli APEC O78 14483246 YP_007382445.1 CDS APECO78_16400 NC_020163.1 3409042 3409896 D COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein 3409042..3409896 Escherichia coli APEC O78 14483247 YP_007382446.1 CDS APECO78_16405 NC_020163.1 3410087 3411367 D COG3711 Transcriptional antiterminator; stationary phase inducible protein CsiE 3410087..3411367 Escherichia coli APEC O78 14483248 YP_007382447.1 CDS APECO78_16410 NC_020163.1 3411359 3412498 R COG0477 Permeases of the major facilitator superfamily; 3-phenylpropionic acid transporter complement(3411359..3412498) Escherichia coli APEC O78 14483249 YP_007382448.1 CDS APECO78_16415 NC_020163.1 3412658 3413548 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator HcaR complement(3412658..3413548) Escherichia coli APEC O78 14483250 YP_007382449.1 CDS APECO78_16420 NC_020163.1 3413684 3415045 D COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit; 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha 3413684..3415045 Escherichia coli APEC O78 14483251 YP_007382450.1 CDS APECO78_16425 NC_020163.1 3415042 3415560 D COG5517 Small subunit of phenylpropionate dioxygenase; 3-phenylpropionate dioxygenase subunit beta 3415042..3415560 Escherichia coli APEC O78 14483252 YP_007382451.1 CDS APECO78_16430 NC_020163.1 3415560 3415880 D COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; 3-phenylpropionate dioxygenase ferredoxin subunit 3415560..3415880 Escherichia coli APEC O78 14483253 YP_007382452.1 CDS APECO78_16435 NC_020163.1 3415877 3416689 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase 3415877..3416689 Escherichia coli APEC O78 14483254 YP_007382453.1 CDS APECO78_16440 NC_020163.1 3416699 3417901 D COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; phenylpropionate dioxygenase ferredoxin reductase subunit 3416699..3417901 Escherichia coli APEC O78 14483255 YP_007382454.1 CDS APECO78_16445 NC_020163.1 3417998 3418420 D COG2259 Predicted membrane protein; putative inner membrane protein 3417998..3418420 Escherichia coli APEC O78 14483256 YP_007382455.1 CDS APECO78_16450 NC_020163.1 3418468 3419340 R COG2017 Galactose mutarotase and related enzymes; hypothetical protein complement(3418468..3419340) Escherichia coli APEC O78 14483257 YP_007382456.1 CDS APECO78_16455 NC_020163.1 3419352 3420413 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase, Zn-dependent and NAD(P)-binding protein complement(3419352..3420413) Escherichia coli APEC O78 14483258 YP_007382457.1 CDS APECO78_16460 NC_020163.1 3420479 3421477 R COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; putative sugar transporter subunit, membrane component of ABC superfamily protein complement(3420479..3421477) Escherichia coli APEC O78 14483259 YP_007382458.1 CDS APECO78_16465 NC_020163.1 3421502 3423013 R COG1129 ABC-type sugar transport system, ATPase component; putative sugar ABC transporter ATP-binding protein complement(3421502..3423013) Escherichia coli APEC O78 14483260 YP_007382459.1 CDS APECO78_16470 NC_020163.1 3423036 3424019 R COG1879 ABC-type sugar transport system, periplasmic component; sugar ABC transporter substrate-binding protein complement(3423036..3424019) Escherichia coli APEC O78 14483261 YP_007382460.1 CDS APECO78_16475 NC_020163.1 3424116 3427397 R COG0457 FOG: TPR repeat; hypothetical protein complement(3424116..3427397) Escherichia coli APEC O78 14483262 YP_007382461.1 CDS APECO78_16480 NC_020163.1 3427515 3428708 D COG1940 Transcriptional regulator/sugar kinase; putative DNA-binding transcriptional regulator, NAGC-like protein 3427515..3428708 Escherichia coli APEC O78 14483263 YP_007382462.1 CDS APECO78_16485 NC_020163.1 3428772 3430025 R COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase complement(3428772..3430025) Escherichia coli APEC O78 14483264 YP_007382463.1 CDS APECO78_16490 NC_020163.1 3430354 3431544 D COG1017 Hemoglobin-like flavoprotein; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 3430354..3431544 Escherichia coli APEC O78 14483265 YP_007382464.1 CDS APECO78_16495 NC_020163.1 3431589 3431927 R COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 1 complement(3431589..3431927) Escherichia coli APEC O78 14483266 YP_007382465.1 CDS APECO78_16500 NC_020163.1 3431988 3433322 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; response regulator GlrR complement(3431988..3433322) Escherichia coli APEC O78 14483267 YP_007382466.1 CDS APECO78_16505 NC_020163.1 3433312 3434025 R putative lipoprotein complement(3433312..3434025) Escherichia coli APEC O78 14483268 YP_007382467.1 CDS APECO78_16510 NC_020163.1 3434190 3435617 R COG0642 Signal transduction histidine kinase; sensory histidine kinase GlrK complement(3434190..3435617) Escherichia coli APEC O78 14483269 YP_007382468.1 CDS APECO78_16515 NC_020163.1 3436175 3440059 R COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain; phosphoribosylformylglycinamidine synthase complement(3436175..3440059) Escherichia coli APEC O78 14483270 YP_007382469.1 CDS APECO78_16520 NC_020163.1 3440320 3441876 D COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; membrane-bound lytic transglycosylase F 3440320..3441876 Escherichia coli APEC O78 14483271 YP_007382470.1 CDS APECO78_16525 NC_020163.1 3441873 3442409 R COG0590 Cytosine/adenosine deaminases; tRNA-specific adenosine deaminase complement(3441873..3442409) Escherichia coli APEC O78 14483272 YP_007382471.1 CDS APECO78_16530 NC_020163.1 3442434 3443069 R COG0560 Phosphoserine phosphatase; hypothetical protein complement(3442434..3443069) Escherichia coli APEC O78 14483273 YP_007382472.1 CDS APECO78_16535 NC_020163.1 3443278 3444126 D COG1737 Transcriptional regulators; DNA-binding transcriptional regulator 3443278..3444126 Escherichia coli APEC O78 14483274 YP_007382473.1 CDS APECO78_16540 NC_020163.1 3444182 3444442 D COG1145 Ferredoxin; 4Fe-4S binding protein 3444182..3444442 Escherichia coli APEC O78 14483275 YP_007382474.1 CDS APECO78_16545 NC_020163.1 3444636 3444716 R toxic membrane protein complement(3444636..3444716) Escherichia coli APEC O78 14483276 YP_007382475.1 CDS APECO78_16550 NC_020163.1 3445134 3445514 R COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase complement(3445134..3445514) Escherichia coli APEC O78 14483277 YP_007382476.1 CDS APECO78_16555 NC_020163.1 3445514 3446245 R COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase complement(3445514..3446245) Escherichia coli APEC O78 14483278 YP_007382477.1 CDS APECO78_16560 NC_020163.1 3446257 3446985 R COG1381 Recombinational DNA repair protein (RecF pathway); DNA repair protein RecO complement(3446257..3446985) Escherichia coli APEC O78 14483279 YP_007382478.1 CDS APECO78_16565 NC_020163.1 3446997 3447902 R COG1159 GTPase; GTP-binding protein Era complement(3446997..3447902) Escherichia coli APEC O78 14483280 YP_007382479.1 CDS APECO78_16570 NC_020163.1 3447899 3448579 R COG0571 dsRNA-specific ribonuclease; ribonuclease III complement(3447899..3448579) Escherichia coli APEC O78 14483281 YP_007382480.1 CDS APECO78_16575 NC_020163.1 3448851 3449825 R COG0681 Signal peptidase I; signal peptidase I complement(3448851..3449825) Escherichia coli APEC O78 14483282 YP_007382481.1 CDS APECO78_16580 NC_020163.1 3449841 3451640 R COG0481 Membrane GTPase LepA; GTP-binding protein LepA complement(3449841..3451640) Escherichia coli APEC O78 14483283 YP_007382482.1 CDS APECO78_16585 NC_020163.1 3451838 3452317 R COG3086 Positive regulator of sigma E activity; SoxR reducing system protein RseC complement(3451838..3452317) Escherichia coli APEC O78 14483284 YP_007382483.1 CDS APECO78_16590 NC_020163.1 3452314 3453270 R COG3026 Negative regulator of sigma E activity; anti-sigma E factor complement(3452314..3453270) Escherichia coli APEC O78 14483285 YP_007382484.1 CDS APECO78_16595 NC_020163.1 3453270 3453920 R COG3073 Negative regulator of sigma E activity; anti-RNA polymerase sigma factor SigE complement(3453270..3453920) Escherichia coli APEC O78 14483286 YP_007382485.1 CDS APECO78_16600 NC_020163.1 3453953 3454528 R COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; RNA polymerase sigma factor RpoE complement(3453953..3454528) Escherichia coli APEC O78 14483287 YP_007382486.1 CDS APECO78_16605 NC_020163.1 3454525 3454680 R hypothetical protein complement(3454525..3454680) Escherichia coli APEC O78 14483288 YP_007382487.1 CDS APECO78_16610 NC_020163.1 3454936 3456558 D COG0029 Aspartate oxidase; L-aspartate oxidase 3454936..3456558 Escherichia coli APEC O78 14483289 YP_007382488.1 CDS APECO78_16615 NC_020163.1 3456543 3457280 R COG4123 Predicted O-methyltransferase; putative S-adenosyl-L-methionine-dependent methyltransferase complement(3456543..3457280) Escherichia coli APEC O78 14483290 YP_007382489.1 CDS APECO78_16620 NC_020163.1 3457412 3458746 D COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase SrmB 3457412..3458746 Escherichia coli APEC O78 14483291 YP_007382490.1 CDS APECO78_16625 NC_020163.1 3458752 3458904 D hypothetical protein 3458752..3458904 Escherichia coli APEC O78 14483292 YP_007382491.1 CDS APECO78_16630 NC_020163.1 3458955 3459836 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(3458955..3459836) Escherichia coli APEC O78 14483293 YP_007382492.1 CDS APECO78_16635 NC_020163.1 3459939 3460526 D COG1280 Putative threonine efflux protein; cysteine/O-acetylserine exporter 3459939..3460526 Escherichia coli APEC O78 14483294 YP_007382493.1 CDS APECO78_16640 NC_020163.1 3460582 3460965 R COG3445 Acid-induced glycyl radical enzyme; autonomous glycyl radical cofactor GrcA complement(3460582..3460965) Escherichia coli APEC O78 14483295 YP_007382494.1 CDS APECO78_16645 NC_020163.1 3461270 3461959 D COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase 3461270..3461959 Escherichia coli APEC O78 14483296 YP_007382495.1 CDS APECO78_16650 NC_020163.1 3462007 3463044 R COG0566 rRNA methylases; rRNA methylase complement(3462007..3463044) Escherichia coli APEC O78 14483297 YP_007382496.1 CDS APECO78_16655 NC_020163.1 3463251 3463670 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 2 3463251..3463670 Escherichia coli APEC O78 14483298 YP_007382497.1 CDS APECO78_16660 NC_020163.1 3463739 3464437 D COG3148 Uncharacterized conserved protein; DTW domain-containing protein 3463739..3464437 Escherichia coli APEC O78 14483299 YP_007382498.1 CDS APECO78_16665 NC_020163.1 3464469 3467129 D COG1042 Acyl-CoA synthetase (NDP forming); protein lysine acetyltransferase 3464469..3467129 Escherichia coli APEC O78 14483300 YP_007382499.1 CDS APECO78_16670 NC_020163.1 3467243 3468598 D COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; CDP-diacylglycerol--serine O-phosphatidyltransferase 3467243..3468598 Escherichia coli APEC O78 14483301 YP_007382500.1 CDS APECO78_16675 NC_020163.1 3468644 3468967 D COG5544 Predicted periplasmic lipoprotein; lipoprotein 3468644..3468967 Escherichia coli APEC O78 14483302 YP_007382501.1 CDS APECO78_16680 NC_020163.1 3468964 3470262 R COG0477 Permeases of the major facilitator superfamily; alpha-ketoglutarate transporter complement(3468964..3470262) Escherichia coli APEC O78 14483303 YP_007382502.1 CDS APECO78_16685 NC_020163.1 3470394 3470504 D hypothetical protein 3470394..3470504 Escherichia coli APEC O78 14483304 YP_007382503.1 CDS APECO78_16690 NC_020163.1 3476134 3478707 R COG0542 ATPases with chaperone activity, ATP-binding subunit; protein disaggregation chaperone complement(3476134..3478707) Escherichia coli APEC O78 14484677 YP_007382504.1 CDS APECO78_16695 NC_020163.1 3478837 3479568 R COG1496 Uncharacterized conserved protein; hypothetical protein complement(3478837..3479568) Escherichia coli APEC O78 14483306 YP_007382505.1 CDS APECO78_16700 NC_020163.1 3479565 3480545 R COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridine synthase D complement(3479565..3480545) Escherichia coli APEC O78 14483307 YP_007382506.1 CDS APECO78_16705 NC_020163.1 3480680 3481417 D COG4105 DNA uptake lipoprotein; outer membrane biogenesis protein BamD 3480680..3481417 Escherichia coli APEC O78 14483308 YP_007382507.1 CDS APECO78_16710 NC_020163.1 3481688 3482029 D COG1544 Ribosome-associated protein Y (PSrp-1); translation inhibitor protein RaiA 3481688..3482029 Escherichia coli APEC O78 14483309 YP_007382508.1 CDS APECO78_16715 NC_020163.1 3482279 3483439 D COG1605 Chorismate mutase; bifunctional chorismate mutase/prephenate dehydratase 3482279..3483439 Escherichia coli APEC O78 14483310 YP_007382509.1 CDS APECO78_16720 NC_020163.1 3483482 3484603 R COG1605 Chorismate mutase; chorismate mutase-T and prephenate dehydrogenase complement(3483482..3484603) Escherichia coli APEC O78 14483311 YP_007382510.1 CDS APECO78_16725 NC_020163.1 3484614 3485684 R COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase complement(3484614..3485684) Escherichia coli APEC O78 14483312 YP_007382511.1 CDS APECO78_16730 NC_020163.1 3485894 3486259 D COG0178 Excinuclease ATPase subunit; lipoprotein 3485894..3486259 Escherichia coli APEC O78 14483313 YP_007382512.1 CDS APECO78_16735 NC_020163.1 3486409 3486927 D hypothetical protein 3486409..3486927 Escherichia coli APEC O78 14483314 YP_007382513.1 CDS APECO78_16740 NC_020163.1 3486920 3488143 D COG2199 FOG: GGDEF domain; hypothetical protein 3486920..3488143 Escherichia coli APEC O78 14483315 YP_007382514.1 CDS APECO78_16745 NC_020163.1 3488159 3488641 D COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane lipoprotein 3488159..3488641 Escherichia coli APEC O78 14483316 YP_007382515.1 CDS APECO78_16750 NC_020163.1 3488717 3489064 R COG0335 Ribosomal protein L19; 50S ribosomal protein L19 complement(3488717..3489064) Escherichia coli APEC O78 14483317 YP_007382516.1 CDS APECO78_16755 NC_020163.1 3489106 3489873 R COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase complement(3489106..3489873) Escherichia coli APEC O78 14483318 YP_007382517.1 CDS APECO78_16760 NC_020163.1 3489904 3490452 R COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM complement(3489904..3490452) Escherichia coli APEC O78 14483319 YP_007382518.1 CDS APECO78_16765 NC_020163.1 3490471 3490719 R COG0228 Ribosomal protein S16; 30S ribosomal protein S16 complement(3490471..3490719) Escherichia coli APEC O78 14483320 YP_007382519.1 CDS APECO78_16770 NC_020163.1 3490856 3492217 R COG0541 Signal recognition particle GTPase; signal recognition particle protein complement(3490856..3492217) Escherichia coli APEC O78 14483321 YP_007382520.1 CDS APECO78_16775 NC_020163.1 3492384 3493175 D COG4137 ABC-type uncharacterized transport system, permease component; putative magnesium transport protein 3492384..3493175 Escherichia coli APEC O78 14483322 YP_007382521.1 CDS APECO78_16780 NC_020163.1 3493286 3494482 D COG4536 Putative Mg2+ and Co2+ transporter CorB; hypothetical protein 3493286..3494482 Escherichia coli APEC O78 14483323 YP_007382522.1 CDS APECO78_16785 NC_020163.1 3494537 3495130 R COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein complement(3494537..3495130) Escherichia coli APEC O78 14483324 YP_007382523.1 CDS APECO78_16790 NC_020163.1 3495253 3496131 D COG0061 Predicted sugar kinase; inorganic polyphosphate/ATP-NAD kinase 3495253..3496131 Escherichia coli APEC O78 14483325 YP_007382524.1 CDS APECO78_16795 NC_020163.1 3496217 3497878 D COG0497 ATPase involved in DNA repair; recombination and repair protein 3496217..3497878 Escherichia coli APEC O78 14483326 YP_007382525.1 CDS APECO78_16800 NC_020163.1 3498027 3498368 D COG2913 Small protein A (tmRNA-binding); outer membrane biogenesis protein BamE 3498027..3498368 Escherichia coli APEC O78 14483327 YP_007382526.1 CDS APECO78_16805 NC_020163.1 3498430 3498720 R COG2914 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3498430..3498720) Escherichia coli APEC O78 14483328 YP_007382527.1 CDS APECO78_16810 NC_020163.1 3498710 3499147 R COG2867 Oligoketide cyclase/lipid transport protein; hypothetical protein complement(3498710..3499147) Escherichia coli APEC O78 14483329 YP_007382528.1 CDS APECO78_16815 NC_020163.1 3499318 3499800 D COG0691 tmRNA-binding protein; ssrA-binding protein 3499318..3499800 Escherichia coli APEC O78 14483330 YP_007382529.1 CDS APECO78_16820 NC_020163.1 3500544 3501773 D COG0582 Integrase; Fels-2 prophage protein 3500544..3501773 Escherichia coli APEC O78 14483331 YP_007382530.1 CDS APECO78_16825 NC_020163.1 3502056 3503612 D COG1961 Site-specific recombinases, DNA invertase Pin homologs; recombinase 3502056..3503612 Escherichia coli APEC O78 14483332 YP_007382531.1 CDS APECO78_16830 NC_020163.1 3503602 3504498 D COG1475 Predicted transcriptional regulators; ParB family protein 3503602..3504498 Escherichia coli APEC O78 14483333 YP_007382532.1 CDS APECO78_16835 NC_020163.1 3504495 3505391 D COG1475 Predicted transcriptional regulators; hypothetical protein 3504495..3505391 Escherichia coli APEC O78 14483334 YP_007382533.1 CDS APECO78_16840 NC_020163.1 3506988 3508535 D COG0286 Type I restriction-modification system methyltransferase subunit; adenine-specific DNA-methyltransferase 3506988..3508535 Escherichia coli APEC O78 14483335 YP_007382534.1 CDS APECO78_16845 NC_020163.1 3508532 3509725 D COG0732 Restriction endonuclease S subunits; type I restriction-modification system, S subunit 3508532..3509725 Escherichia coli APEC O78 14483336 YP_007382535.1 CDS APECO78_16850 NC_020163.1 3509784 3513023 D COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; HsdR family type I site-specific deoxyribonuclease 3509784..3513023 Escherichia coli APEC O78 14483337 YP_007382536.1 CDS APECO78_16855 NC_020163.1 3513069 3513446 R COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase complement(3513069..3513446) Escherichia coli APEC O78 14483338 YP_007382537.1 CDS APECO78_16860 NC_020163.1 3514252 3515121 D COG0666 FOG: Ankyrin repeat; hypothetical protein 3514252..3515121 Escherichia coli APEC O78 14483339 YP_007382538.1 CDS APECO78_16865 NC_020163.1 3515092 3515997 R COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB complement(3515092..3515997) Escherichia coli APEC O78 14483340 YP_007382539.1 CDS APECO78_16870 NC_020163.1 3515955 3516320 R COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA complement(3515955..3516320) Escherichia coli APEC O78 14483341 YP_007382540.1 CDS APECO78_16875 NC_020163.1 3516934 3518424 D COG0366 Glycosidases; putative alpha-amylase 3516934..3518424 Escherichia coli APEC O78 14483342 YP_007382541.1 CDS APECO78_16880 NC_020163.1 3518563 3518835 D alpha amylase 3518563..3518835 Escherichia coli APEC O78 14483343 YP_007382542.1 CDS APECO78_16885 NC_020163.1 3519171 3520148 D carbon starvation induced protein 3519171..3520148 Escherichia coli APEC O78 14483344 YP_007382543.1 CDS APECO78_16890 NC_020163.1 3520168 3521436 D COG0579 Predicted dehydrogenase; hydroxyglutarate oxidase 3520168..3521436 Escherichia coli APEC O78 14483345 YP_007382544.1 CDS gabD NC_020163.1 3521459 3522907 D COG1012 NAD-dependent aldehyde dehydrogenases; succinate-semialdehyde dehydrogenase I 3521459..3522907 Escherichia coli APEC O78 14483346 YP_007382545.1 CDS APECO78_16900 NC_020163.1 3522921 3524201 D COG0160 4-aminobutyrate aminotransferase and related aminotransferases; 4-aminobutyrate aminotransferase 3522921..3524201 Escherichia coli APEC O78 14483347 YP_007382546.1 CDS APECO78_16905 NC_020163.1 3524439 3525839 D COG1113 Gamma-aminobutyrate permease and related permeases; gamma-aminobutyrate transporter 3524439..3525839 Escherichia coli APEC O78 14483348 YP_007382547.1 CDS APECO78_16910 NC_020163.1 3525860 3526522 D COG1802 Transcriptional regulators; GntR family transcriptional regulator 3525860..3526522 Escherichia coli APEC O78 14483349 YP_007382548.1 CDS APECO78_16915 NC_020163.1 3526523 3526972 R COG1652 Uncharacterized protein containing LysM domain; LysM domain/BON superfamily protein complement(3526523..3526972) Escherichia coli APEC O78 14483350 YP_007382549.1 CDS APECO78_16920 NC_020163.1 3527056 3527214 R COG0401 Uncharacterized homolog of Blt101; hypothetical protein complement(3527056..3527214) Escherichia coli APEC O78 14483351 YP_007382550.1 CDS APECO78_16925 NC_020163.1 3527397 3527696 D COG0640 Predicted transcriptional regulators; DNA-binding transcriptional regulator 3527397..3527696 Escherichia coli APEC O78 14483352 YP_007382551.1 CDS APECO78_16930 NC_020163.1 3527706 3528230 D COG0607 Rhodanese-related sulfurtransferase; inner membrane protein with hydrolase activity 3527706..3528230 Escherichia coli APEC O78 14483353 YP_007382552.1 CDS APECO78_16935 NC_020163.1 3528277 3528681 R COG2916 DNA-binding protein H-NS; DNA binding protein complement(3528277..3528681) Escherichia coli APEC O78 14483354 YP_007382553.1 CDS APECO78_16940 NC_020163.1 3529349 3529798 D hypothetical protein 3529349..3529798 Escherichia coli APEC O78 14483355 YP_007382554.1 CDS APECO78_16945 NC_020163.1 3529835 3530179 R hypothetical protein complement(3529835..3530179) Escherichia coli APEC O78 14483356 YP_007382555.1 CDS APECO78_16950 NC_020163.1 3530331 3530660 D COG4575 Uncharacterized conserved protein; hypothetical protein 3530331..3530660 Escherichia coli APEC O78 14483357 YP_007382556.1 CDS APECO78_16955 NC_020163.1 3530908 3531153 D COG0695 Glutaredoxin and related proteins; glutaredoxin-like protein 3530908..3531153 Escherichia coli APEC O78 14483358 YP_007382557.1 CDS APECO78_16960 NC_020163.1 3531150 3531560 D COG1780 Protein involved in ribonucleotide reduction; ribonucleotide reductase stimulatory protein 3531150..3531560 Escherichia coli APEC O78 14483359 YP_007382558.1 CDS APECO78_16965 NC_020163.1 3531533 3533677 D COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 3531533..3533677 Escherichia coli APEC O78 14483360 YP_007382559.1 CDS nrdF NC_020163.1 3533687 3534646 D COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 3533687..3534646 Escherichia coli APEC O78 14483361 YP_007382560.1 CDS APECO78_16975 NC_020163.1 3535001 3536203 D COG4175 ABC-type proline/glycine betaine transport system, ATPase component; Glycine betaine/L-proline transport ATP-binding protein 3535001..3536203 Escherichia coli APEC O78 14483362 YP_007382561.1 CDS APECO78_16980 NC_020163.1 3536196 3537260 D COG4176 ABC-type proline/glycine betaine transport system, permease component; glycine betaine transporter membrane protein 3536196..3537260 Escherichia coli APEC O78 14483363 YP_007382562.1 CDS APECO78_16985 NC_020163.1 3537318 3538310 D COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components; glycine betaine transporter periplasmic subunit 3537318..3538310 Escherichia coli APEC O78 14483364 YP_007382563.1 CDS APECO78_16990 NC_020163.1 3538602 3539786 D COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily transporter 3538602..3539786 Escherichia coli APEC O78 14483365 YP_007382564.1 CDS APECO78_16995 NC_020163.1 3539910 3540647 D COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); branched chain amino acid exporter (LIV-E) family protein 3539910..3540647 Escherichia coli APEC O78 14483366 YP_007382565.1 CDS APECO78_17000 NC_020163.1 3540637 3540972 D L-valine exporter 3540637..3540972 Escherichia coli APEC O78 14483367 YP_007382566.1 CDS APECO78_17005 NC_020163.1 3541063 3541593 D COG1846 Transcriptional regulators; transcriptional repressor MprA 3541063..3541593 Escherichia coli APEC O78 14483368 YP_007382567.1 CDS APECO78_17010 NC_020163.1 3541720 3542892 D COG1566 Multidrug resistance efflux pump; multidrug efflux system protein EmrA 3541720..3542892 Escherichia coli APEC O78 14483369 YP_007382568.1 CDS APECO78_17015 NC_020163.1 3542909 3544447 D COG0477 Permeases of the major facilitator superfamily; membrane translocase 3542909..3544447 Escherichia coli APEC O78 14483370 YP_007382569.1 CDS APECO78_17020 NC_020163.1 3544511 3545026 R COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase complement(3544511..3545026) Escherichia coli APEC O78 14483371 YP_007382570.1 CDS APECO78_17025 NC_020163.1 3545175 3546731 R COG2918 Gamma-glutamylcysteine synthetase; glutamate--cysteine ligase complement(3545175..3546731) Escherichia coli APEC O78 14483372 YP_007382571.1 CDS APECO78_17030 NC_020163.1 3546804 3547232 R COG1238 Predicted membrane protein; hypothetical protein complement(3546804..3547232) Escherichia coli APEC O78 14483373 YP_007382572.1 CDS APECO78_17035 NC_020163.1 3547229 3547795 R COG0637 Predicted phosphatase/phosphohexomutase; fructose-1-P/6-phosphogluconate phosphatase complement(3547229..3547795) Escherichia coli APEC O78 14483374 YP_007382573.1 CDS APECO78_17040 NC_020163.1 3549253 3549438 R COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator complement(3549253..3549438) Escherichia coli APEC O78 14484644 YP_007382574.1 CDS alaS NC_020163.1 3549673 3552303 R COG0013 Alanyl-tRNA synthetase; alanyl-tRNA ligase complement(3549673..3552303) Escherichia coli APEC O78 14483376 YP_007382575.1 CDS APECO78_17050 NC_020163.1 3552253 3552390 D hypothetical protein 3552253..3552390 Escherichia coli APEC O78 14483377 YP_007382576.1 CDS recX NC_020163.1 3552431 3552931 R COG2137 Uncharacterized protein conserved in bacteria; recombination regulator RecX complement(3552431..3552931) Escherichia coli APEC O78 14483378 YP_007382577.1 CDS APECO78_17060 NC_020163.1 3553174 3554235 R COG0468 RecA/RadA recombinase; recombinase A complement(3553174..3554235) Escherichia coli APEC O78 14483379 YP_007382578.1 CDS APECO78_17065 NC_020163.1 3554315 3554812 R COG1546 Uncharacterized protein (competence- and mitomycin-induced); competence damage-inducible protein A complement(3554315..3554812) Escherichia coli APEC O78 14483380 YP_007382579.1 CDS APECO78_17070 NC_020163.1 3554957 3556042 R COG2951 Membrane-bound lytic murein transglycosylase B; murein hydrolase B complement(3554957..3556042) Escherichia coli APEC O78 14483381 YP_007382580.1 CDS APECO78_17075 NC_020163.1 3556298 3556861 D COG3730 Phosphotransferase system sorbitol-specific component IIC; glucitol/sorbitol permease IIC component 3556298..3556861 Escherichia coli APEC O78 14483382 YP_007382581.1 CDS srlE NC_020163.1 3556858 3557817 D COG3732 Phosphotransferase system sorbitol-specific component IIBC; PTS system glucitol/sorbitol-specific transporter subunit IIB 3556858..3557817 Escherichia coli APEC O78 14483383 YP_007382582.1 CDS APECO78_17085 NC_020163.1 3557828 3558199 D COG3731 Phosphotransferase system sorbitol-specific component IIA; PTS system glucitol/sorbitol-specific transporter subunit IIA 3557828..3558199 Escherichia coli APEC O78 14483384 YP_007382583.1 CDS APECO78_17090 NC_020163.1 3558203 3558982 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); sorbitol-6-phosphate dehydrogenase 3558203..3558982 Escherichia coli APEC O78 14483385 YP_007382584.1 CDS APECO78_17095 NC_020163.1 3559087 3559446 D COG4578 Glucitol operon activator; DNA-binding transcriptional activator GutM 3559087..3559446 Escherichia coli APEC O78 14483386 YP_007382585.1 CDS APECO78_17100 NC_020163.1 3559513 3560286 D COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor SrlR 3559513..3560286 Escherichia coli APEC O78 14483387 YP_007382586.1 CDS gutQ NC_020163.1 3560279 3561244 D COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 3560279..3561244 Escherichia coli APEC O78 14483388 YP_007382587.1 CDS APECO78_17110 NC_020163.1 3561241 3562755 R COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; anaerobic nitric oxide reductase transcription regulator complement(3561241..3562755) Escherichia coli APEC O78 14483389 YP_007382588.1 CDS APECO78_17115 NC_020163.1 3562942 3564381 D COG0426 Uncharacterized flavoproteins; anaerobic nitric oxide reductase flavorubredoxin 3562942..3564381 Escherichia coli APEC O78 14483390 YP_007382589.1 CDS APECO78_17120 NC_020163.1 3564378 3565511 D COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; NADH:flavorubredoxin oxidoreductase 3564378..3565511 Escherichia coli APEC O78 14483391 YP_007382590.1 CDS APECO78_17125 NC_020163.1 3565639 3567891 R COG0068 Hydrogenase maturation factor; carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases complement(3565639..3567891) Escherichia coli APEC O78 14483392 YP_007382591.1 CDS APECO78_17130 NC_020163.1 3568044 3568571 R COG1142 Fe-S-cluster-containing hydrogenase components 2; electron transport protein HydN complement(3568044..3568571) Escherichia coli APEC O78 14483393 YP_007382592.1 CDS APECO78_17135 NC_020163.1 3568720 3569733 R COG1609 Transcriptional regulators; DNA-binding transcriptional repressor complement(3568720..3569733) Escherichia coli APEC O78 14483394 YP_007382593.1 CDS APECO78_17140 NC_020163.1 3569990 3571447 D COG1264 Phosphotransferase system IIB components; PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC 3569990..3571447 Escherichia coli APEC O78 14483395 YP_007382594.1 CDS APECO78_17145 NC_020163.1 3571456 3572880 D COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; cryptic 6-phospho-beta-glucosidase 3571456..3572880 Escherichia coli APEC O78 14483396 YP_007382595.1 CDS APECO78_17150 NC_020163.1 3572994 3573413 R COG5499 Predicted transcription regulator containing HTH domain; HTH-type transcriptional regulator ygjM complement(3572994..3573413) Escherichia coli APEC O78 14483397 YP_007382596.1 CDS APECO78_17155 NC_020163.1 3573410 3573721 R COG4680 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3573410..3573721) Escherichia coli APEC O78 14483398 YP_007382597.1 CDS APECO78_17160 NC_020163.1 3573895 3574656 R periplasmic or exported protein complement(3573895..3574656) Escherichia coli APEC O78 14483399 YP_007382598.1 CDS APECO78_17165 NC_020163.1 3574681 3575151 R COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 3 maturation protease complement(3574681..3575151) Escherichia coli APEC O78 14483400 YP_007382599.1 CDS APECO78_17170 NC_020163.1 3575144 3575554 R formate hydrogenlyase maturation protein HycH complement(3575144..3575554) Escherichia coli APEC O78 14483401 YP_007382600.1 CDS APECO78_17175 NC_020163.1 3575551 3576318 R COG3260 Ni,Fe-hydrogenase III small subunit; hydrogenase 3 and formate hydrogenase complex, HycG subunit complement(3575551..3576318) Escherichia coli APEC O78 14483402 YP_007382601.1 CDS APECO78_17180 NC_020163.1 3576318 3576860 R COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); formate hydrogenlyase complex iron-sulfur subunit complement(3576318..3576860) Escherichia coli APEC O78 14483403 YP_007382602.1 CDS APECO78_17185 NC_020163.1 3576870 3578579 R COG3262 Ni,Fe-hydrogenase III component G; Subunit 5 formate hydrogenlyase complement(3576870..3578579) Escherichia coli APEC O78 14483404 YP_007382603.1 CDS APECO78_17190 NC_020163.1 3578597 3579520 R COG0650 Formate hydrogenlyase subunit 4; formate hydrogenlyase subunit 4 complement(3578597..3579520) Escherichia coli APEC O78 14483405 YP_007382604.1 CDS APECO78_17195 NC_020163.1 3579523 3581349 R COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; formate hydrogenlyase subunit complement(3579523..3581349) Escherichia coli APEC O78 14483406 YP_007382605.1 CDS APECO78_17200 NC_020163.1 3581346 3581957 R COG1142 Fe-S-cluster-containing hydrogenase components 2; formate hydrogenlyase subunit 2 complement(3581346..3581957) Escherichia coli APEC O78 14483407 YP_007382606.1 CDS APECO78_17205 NC_020163.1 3581858 3582166 D hypothetical protein 3581858..3582166 Escherichia coli APEC O78 14483408 YP_007382607.1 CDS APECO78_17210 NC_020163.1 3582082 3582543 R formate hydrogenlyase regulatory protein HycA complement(3582082..3582543) Escherichia coli APEC O78 14483409 YP_007382608.1 CDS hypA NC_020163.1 3582755 3583105 D COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein 3582755..3583105 Escherichia coli APEC O78 14483410 YP_007382609.1 CDS APECO78_17220 NC_020163.1 3583109 3583981 D COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; guanine-nucleotide binding protein in formate-hydrogenlyase system 3583109..3583981 Escherichia coli APEC O78 14483411 YP_007382610.1 CDS APECO78_17225 NC_020163.1 3583972 3584244 D COG0298 Hydrogenase maturation factor; hydrogenase assembly chaperone 3583972..3584244 Escherichia coli APEC O78 14483412 YP_007382611.1 CDS APECO78_17230 NC_020163.1 3584244 3585365 D COG0409 Hydrogenase maturation factor; hydrogenase isoenzymes formation protein HypD 3584244..3585365 Escherichia coli APEC O78 14483413 YP_007382612.1 CDS APECO78_17235 NC_020163.1 3585362 3586372 D COG0309 Hydrogenase maturation factor; carbamoyl dehydratase HypE 3585362..3586372 Escherichia coli APEC O78 14483414 YP_007382613.1 CDS APECO78_17240 NC_020163.1 3586446 3588524 D COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; formate hydrogenlyase transcriptional activator FhlA 3586446..3588524 Escherichia coli APEC O78 14483415 YP_007382614.1 CDS APECO78_17245 NC_020163.1 3588561 3588914 R hypothetical protein complement(3588561..3588914) Escherichia coli APEC O78 14483416 YP_007382615.1 CDS APECO78_17250 NC_020163.1 3588991 3589125 R hypothetical protein complement(3588991..3589125) Escherichia coli APEC O78 14483417 YP_007382616.1 CDS APECO78_17255 NC_020163.1 3589201 3591762 D COG0249 Mismatch repair ATPase (MutS family); DNA mismatch repair protein MutS 3589201..3591762 Escherichia coli APEC O78 14483418 YP_007382617.1 CDS APECO78_17260 NC_020163.1 3591868 3592524 D COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine-specific protein phosphatase 2 3591868..3592524 Escherichia coli APEC O78 14483419 YP_007382618.1 CDS APECO78_17265 NC_020163.1 3592575 3593342 R COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator complement(3592575..3593342) Escherichia coli APEC O78 14483420 YP_007382619.1 CDS APECO78_17270 NC_020163.1 3593538 3594446 D COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; dehydrogenase 3593538..3594446 Escherichia coli APEC O78 14483421 YP_007382620.1 CDS APECO78_17275 NC_020163.1 3594443 3595705 D COG3395 Uncharacterized protein conserved in bacteria; hypothetical protein 3594443..3595705 Escherichia coli APEC O78 14483422 YP_007382621.1 CDS APECO78_17280 NC_020163.1 3595702 3596340 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; aldolase 3595702..3596340 Escherichia coli APEC O78 14483423 YP_007382622.1 CDS APECO78_17285 NC_020163.1 3596345 3597121 D COG3622 Hydroxypyruvate isomerase; hypothetical protein 3596345..3597121 Escherichia coli APEC O78 14483424 YP_007382623.1 CDS APECO78_17290 NC_020163.1 3597210 3598574 D COG2610 H+/gluconate symporter and related permeases; putative transporter 3597210..3598574 Escherichia coli APEC O78 14483425 YP_007382624.1 CDS APECO78_17295 NC_020163.1 3598668 3599660 R COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoS complement(3598668..3599660) Escherichia coli APEC O78 14483426 YP_007382625.1 CDS nlpD NC_020163.1 3599723 3600862 R COG0739 Membrane proteins related to metalloendopeptidases; lipoprotein NlpD complement(3599723..3600862) Escherichia coli APEC O78 14483427 YP_007382626.1 CDS APECO78_17305 NC_020163.1 3601002 3601628 R COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase complement(3601002..3601628) Escherichia coli APEC O78 14483428 YP_007382627.1 CDS APECO78_17310 NC_020163.1 3601622 3602383 R COG0496 Predicted acid phosphatase; stationary phase survival protein SurE complement(3601622..3602383) Escherichia coli APEC O78 14483429 YP_007382628.1 CDS APECO78_17315 NC_020163.1 3602364 3603413 R COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D complement(3602364..3603413) Escherichia coli APEC O78 14483430 YP_007382629.1 CDS APECO78_17320 NC_020163.1 3603410 3603889 R COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(3603410..3603889) Escherichia coli APEC O78 14483431 YP_007382630.1 CDS ispD NC_020163.1 3603889 3604599 R COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3603889..3604599) Escherichia coli APEC O78 14483432 YP_007382631.1 CDS APECO78_17330 NC_020163.1 3604618 3604929 R COG2919 Septum formation initiator; cell division protein FtsB complement(3604618..3604929) Escherichia coli APEC O78 14483433 YP_007382632.1 CDS APECO78_17335 NC_020163.1 3605123 3605446 R COG0665 Glycine/D-amino acid oxidases (deaminating); hypothetical protein complement(3605123..3605446) Escherichia coli APEC O78 14483434 YP_007382633.1 CDS APECO78_17340 NC_020163.1 3605496 3606101 R COG0529 Adenylylsulfate kinase and related kinases; adenylylsulfate kinase complement(3605496..3606101) Escherichia coli APEC O78 14483435 YP_007382634.1 CDS APECO78_17345 NC_020163.1 3606101 3607528 R COG2895 GTPases - Sulfate adenylate transferase subunit 1; sulfate adenylyltransferase complement(3606101..3607528) Escherichia coli APEC O78 14483436 YP_007382635.1 CDS APECO78_17350 NC_020163.1 3607530 3608438 R COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; sulfate adenylyltransferase subunit 2 complement(3607530..3608438) Escherichia coli APEC O78 14483437 YP_007382636.1 CDS APECO78_17355 NC_020163.1 3608690 3609727 D COG2234 Predicted aminopeptidases; alkaline phosphatase isozyme conversion aminopeptidase 3608690..3609727 Escherichia coli APEC O78 14483438 YP_007382637.1 CDS APECO78_17360 NC_020163.1 3609874 3610053 R hypothetical protein complement(3609874..3610053) Escherichia coli APEC O78 14483439 YP_007382638.1 CDS APECO78_17365 NC_020163.1 3610052 3610411 D COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); hypothetical protein 3610052..3610411 Escherichia coli APEC O78 14483440 YP_007382639.1 CDS APECO78_17370 NC_020163.1 3610483 3610776 R ssRNA endonuclease complement(3610483..3610776) Escherichia coli APEC O78 14483441 YP_007382640.1 CDS APECO78_17375 NC_020163.1 3610773 3611696 R COG1518 Uncharacterized protein predicted to be involved in DNA repair; CRISPR-associated protein Cas1 complement(3610773..3611696) Escherichia coli APEC O78 14483442 YP_007382641.1 CDS APECO78_17380 NC_020163.1 3611693 3612343 R hypothetical protein complement(3611693..3612343) Escherichia coli APEC O78 14483443 YP_007382642.1 CDS APECO78_17385 NC_020163.1 3612325 3613071 R hypothetical protein complement(3612325..3613071) Escherichia coli APEC O78 14483444 YP_007382643.1 CDS APECO78_17390 NC_020163.1 3613082 3614137 R hypothetical protein complement(3613082..3614137) Escherichia coli APEC O78 14483445 YP_007382644.1 CDS APECO78_17395 NC_020163.1 3614149 3614685 R hypothetical protein complement(3614149..3614685) Escherichia coli APEC O78 14483446 YP_007382645.1 CDS APECO78_17400 NC_020163.1 3614682 3616244 R hypothetical protein complement(3614682..3616244) Escherichia coli APEC O78 14483447 YP_007382646.1 CDS APECO78_17405 NC_020163.1 3616342 3618582 R COG1203 Predicted helicases; helicase complement(3616342..3618582) Escherichia coli APEC O78 14483448 YP_007382647.1 CDS APECO78_17410 NC_020163.1 3618622 3619041 R CRISPR-associated helicase Cas3 complement(3618622..3619041) Escherichia coli APEC O78 14483449 YP_007382648.1 CDS APECO78_17415 NC_020163.1 3619235 3619387 R small toxic membrane polypeptide complement(3619235..3619387) Escherichia coli APEC O78 14483450 YP_007382649.1 CDS APECO78_17420 NC_020163.1 3619652 3620386 R COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; phosphoadenosine phosphosulfate reductase complement(3619652..3620386) Escherichia coli APEC O78 14483451 YP_007382650.1 CDS APECO78_17425 NC_020163.1 3620460 3622172 R COG0155 Sulfite reductase, beta subunit (hemoprotein); sulfite reductase subunit beta complement(3620460..3622172) Escherichia coli APEC O78 14483452 YP_007382651.1 CDS cysJ NC_020163.1 3622172 3623971 R COG0369 Sulfite reductase, alpha subunit (flavoprotein); sulfite reductase subunit alpha complement(3622172..3623971) Escherichia coli APEC O78 14483453 YP_007382652.1 CDS APECO78_17435 NC_020163.1 3624290 3624652 D COG0720 6-pyruvoyl-tetrahydropterin synthase; putative 6-pyruvoyl tetrahydrobiopterin synthase 3624290..3624652 Escherichia coli APEC O78 14483454 YP_007382653.1 CDS APECO78_17440 NC_020163.1 3624730 3626001 D COG0644 Dehydrogenases (flavoproteins); oxidoreductase with FAD/NAD(P)-binding domain 3624730..3626001 Escherichia coli APEC O78 14483455 YP_007382654.1 CDS APECO78_17445 NC_020163.1 3625992 3626252 D COG2440 Ferredoxin-like protein; 4Fe-4S binding protein 3625992..3626252 Escherichia coli APEC O78 14483456 YP_007382655.1 CDS APECO78_17450 NC_020163.1 3626269 3626844 D COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding); anti-terminator regulatory protein 3626269..3626844 Escherichia coli APEC O78 14483457 YP_007382656.1 CDS APECO78_17455 NC_020163.1 3626992 3627852 R COG2025 Electron transfer flavoprotein, alpha subunit; flavoprotein complement(3626992..3627852) Escherichia coli APEC O78 14483458 YP_007382657.1 CDS APECO78_17460 NC_020163.1 3627849 3628628 R COG2086 Electron transfer flavoprotein, beta subunit; putative flavoprotein complement(3627849..3628628) Escherichia coli APEC O78 14483459 YP_007382658.1 CDS APECO78_17465 NC_020163.1 3628606 3629943 R COG0477 Permeases of the major facilitator superfamily; transporter complement(3628606..3629943) Escherichia coli APEC O78 14483460 YP_007382659.1 CDS APECO78_17470 NC_020163.1 3630037 3631491 R COG0277 FAD/FMN-containing dehydrogenases; FAD containing dehydrogenase complement(3630037..3631491) Escherichia coli APEC O78 14483461 YP_007382660.1 CDS APECO78_17475 NC_020163.1 3631561 3632346 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); putative deoxygluconate dehydrogenase complement(3631561..3632346) Escherichia coli APEC O78 14483462 YP_007382661.1 CDS APECO78_17480 NC_020163.1 3632665 3633942 D COG0477 Permeases of the major facilitator superfamily; transporter 3632665..3633942 Escherichia coli APEC O78 14483463 YP_007382662.1 CDS APECO78_17485 NC_020163.1 3633969 3635447 D COG1070 Sugar (pentulose and hexulose) kinases; putative kinase 3633969..3635447 Escherichia coli APEC O78 14483464 YP_007382663.1 CDS APECO78_17490 NC_020163.1 3636941 3637612 R COG0602 Organic radical activating enzymes; hypothetical protein complement(3636941..3637612) Escherichia coli APEC O78 14483465 YP_007382664.1 CDS APECO78_17495 NC_020163.1 3637751 3637891 D hypothetical protein 3637751..3637891 Escherichia coli APEC O78 14483466 YP_007382665.1 CDS APECO78_17500 NC_020163.1 3637905 3638777 D COG1512 Beta-propeller domains of methanol dehydrogenase type; hypothetical protein 3637905..3638777 Escherichia coli APEC O78 14483467 YP_007382666.1 CDS APECO78_17505 NC_020163.1 3638752 3638853 D hypothetical protein 3638752..3638853 Escherichia coli APEC O78 14483468 YP_007382667.1 CDS APECO78_17510 NC_020163.1 3638837 3640135 R COG0148 Enolase; enolase complement(3638837..3640135) Escherichia coli APEC O78 14483469 YP_007382668.1 CDS APECO78_17515 NC_020163.1 3640223 3641860 R COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase complement(3640223..3641860) Escherichia coli APEC O78 14483470 YP_007382669.1 CDS mazG NC_020163.1 3642088 3642879 R COG1694 Predicted pyrophosphatase; nucleoside triphosphate pyrophosphohydrolase complement(3642088..3642879) Escherichia coli APEC O78 14483471 YP_007382670.1 CDS APECO78_17525 NC_020163.1 3642950 3643285 R COG2337 Growth inhibitor; toxin ChpA complement(3642950..3643285) Escherichia coli APEC O78 14483472 YP_007382671.1 CDS APECO78_17530 NC_020163.1 3643285 3643533 R COG2336 Growth regulator; antitoxin MazE complement(3643285..3643533) Escherichia coli APEC O78 14483473 YP_007382672.1 CDS APECO78_17535 NC_020163.1 3643611 3645845 R COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; (p)ppGpp synthetase I complement(3643611..3645845) Escherichia coli APEC O78 14483474 YP_007382673.1 CDS rumA NC_020163.1 3645893 3647194 R COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA m(5)U1939 methyltransferase complement(3645893..3647194) Escherichia coli APEC O78 14483475 YP_007382674.1 CDS APECO78_17545 NC_020163.1 3647251 3650007 D COG0642 Signal transduction histidine kinase; hybrid sensory histidine kinase BarA 3647251..3650007 Escherichia coli APEC O78 14483476 YP_007382675.1 CDS gudD NC_020163.1 3650239 3651579 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; glucarate dehydratase complement(3650239..3651579) Escherichia coli APEC O78 14483477 YP_007382676.1 CDS APECO78_17555 NC_020163.1 3651600 3652940 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; (D)-glucarate dehydratase 2 GudX complement(3651600..3652940) Escherichia coli APEC O78 14483478 YP_007382677.1 CDS APECO78_17560 NC_020163.1 3652942 3654294 R COG0477 Permeases of the major facilitator superfamily; D-glucarate transporter GudP complement(3652942..3654294) Escherichia coli APEC O78 14483479 YP_007382678.1 CDS APECO78_17565 NC_020163.1 3654729 3655178 R COG0716 Flavodoxins; flavodoxin complement(3654729..3655178) Escherichia coli APEC O78 14483480 YP_007382679.1 CDS APECO78_17570 NC_020163.1 3655196 3655978 R COG0564 Pseudouridylate synthases, 23S RNA-specific; tRNA pseudouridine synthase C complement(3655196..3655978) Escherichia coli APEC O78 14483481 YP_007382680.1 CDS APECO78_17575 NC_020163.1 3655978 3656307 R COG3098 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3655978..3656307) Escherichia coli APEC O78 14483482 YP_007382681.1 CDS APECO78_17580 NC_020163.1 3656554 3656679 R hypothetical protein complement(3656554..3656679) Escherichia coli APEC O78 14483483 YP_007382682.1 CDS APECO78_17585 NC_020163.1 3656929 3657474 R SecY interacting protein Syd complement(3656929..3657474) Escherichia coli APEC O78 14483484 YP_007382683.1 CDS queF NC_020163.1 3657542 3658390 D COG2904 Uncharacterized protein conserved in bacteria; 7-cyano-7-deazaguanine reductase 3657542..3658390 Escherichia coli APEC O78 14483485 YP_007382684.1 CDS APECO78_17595 NC_020163.1 3658502 3659866 D COG1611 Predicted Rossmann fold nucleotide-binding protein; hypothetical protein 3658502..3659866 Escherichia coli APEC O78 14483486 YP_007382685.1 CDS APECO78_17600 NC_020163.1 3660423 3661712 D COG0814 Amino acid permeases; serine transporter 3660423..3661712 Escherichia coli APEC O78 14483487 YP_007382686.1 CDS APECO78_17605 NC_020163.1 3661770 3663137 D COG1760 L-serine deaminase; L-serine deaminase II 3661770..3663137 Escherichia coli APEC O78 14483488 YP_007382687.1 CDS APECO78_17610 NC_020163.1 3663249 3664004 D COG0258 5'-3' exonuclease (including N-terminal domain of PolI); flap endonuclease-like protein 3663249..3664004 Escherichia coli APEC O78 14483489 YP_007382688.1 CDS APECO78_17615 NC_020163.1 3664059 3665207 R COG1454 Alcohol dehydrogenase, class IV; L-1,2-propanediol oxidoreductase complement(3664059..3665207) Escherichia coli APEC O78 14483490 YP_007382689.1 CDS APECO78_17620 NC_020163.1 3665235 3665882 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-fuculose phosphate aldolase complement(3665235..3665882) Escherichia coli APEC O78 14483491 YP_007382690.1 CDS APECO78_17625 NC_020163.1 3666429 3667745 D COG0738 Fucose permease; L-fucose transporter 3666429..3667745 Escherichia coli APEC O78 14483492 YP_007382691.1 CDS fucI NC_020163.1 3667778 3669553 D COG2407 L-fucose isomerase and related proteins; L-fucose isomerase 3667778..3669553 Escherichia coli APEC O78 14483493 YP_007382692.1 CDS APECO78_17635 NC_020163.1 3669662 3671080 D COG1070 Sugar (pentulose and hexulose) kinases; L-fuculokinase 3669662..3671080 Escherichia coli APEC O78 14483494 YP_007382693.1 CDS APECO78_17640 NC_020163.1 3671082 3671504 D COG4154 Fucose dissimilation pathway protein FucU; L-fucose mutarotase 3671082..3671504 Escherichia coli APEC O78 14483495 YP_007382694.1 CDS APECO78_17645 NC_020163.1 3671562 3672293 D COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional activator FucR 3671562..3672293 Escherichia coli APEC O78 14483496 YP_007382695.1 CDS APECO78_17650 NC_020163.1 3672337 3673437 R COG2933 Predicted SAM-dependent methyltransferase; 23S rRNA C2498 ribose 2'-O-ribose methyltransferase complement(3672337..3673437) Escherichia coli APEC O78 14483497 YP_007382696.1 CDS APECO78_17655 NC_020163.1 3673430 3673825 R COG2363 Uncharacterized small membrane protein; hypothetical protein complement(3673430..3673825) Escherichia coli APEC O78 14483498 YP_007382697.1 CDS APECO78_17660 NC_020163.1 3673844 3674761 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator GcvA complement(3673844..3674761) Escherichia coli APEC O78 14483499 YP_007382698.1 CDS APECO78_17665 NC_020163.1 3675112 3675339 R hypothetical protein complement(3675112..3675339) Escherichia coli APEC O78 14483500 YP_007382699.1 CDS APECO78_17670 NC_020163.1 3675531 3676736 D COG0520 Selenocysteine lyase; cysteine sulfinate desulfinase 3675531..3676736 Escherichia coli APEC O78 14483501 YP_007382700.1 CDS APECO78_17675 NC_020163.1 3676736 3677179 D COG2166 SufE protein probably involved in Fe-S center assembly; CsdA-binding activator 3676736..3677179 Escherichia coli APEC O78 14483502 YP_007382701.1 CDS APECO78_17680 NC_020163.1 3677230 3678036 R COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; sulfur acceptor protein CsdL complement(3677230..3678036) Escherichia coli APEC O78 14483503 YP_007382702.1 CDS APECO78_17685 NC_020163.1 3678275 3679372 R COG2821 Membrane-bound lytic murein transglycosylase; Membrane-bound lytic murein transglycosylase A complement(3678275..3679372) Escherichia coli APEC O78 14483504 YP_007382703.1 CDS APECO78_17690 NC_020163.1 3679952 3681205 R COG0860 N-acetylmuramoyl-L-alanine amidase; Putative amidase complement(3679952..3681205) Escherichia coli APEC O78 14484647 YP_007382704.1 CDS APECO78_17695 NC_020163.1 3681437 3682768 D COG0548 Acetylglutamate kinase; N-acetylglutamate synthase 3681437..3682768 Escherichia coli APEC O78 14483506 YP_007382705.1 CDS recD NC_020163.1 3682830 3684656 R COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; exonuclease V subunit alpha complement(3682830..3684656) Escherichia coli APEC O78 14483507 YP_007382706.1 CDS recB NC_020163.1 3684656 3688198 R COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); exonuclease V subunit beta complement(3684656..3688198) Escherichia coli APEC O78 14483508 YP_007382707.1 CDS APECO78_17710 NC_020163.1 3688191 3691079 R COG1025 Secreted/periplasmic Zn-dependent peptidases, insulinase-like; protease complement(3688191..3691079) Escherichia coli APEC O78 14483509 YP_007382708.1 CDS recC NC_020163.1 3691255 3694623 R COG1330 Exonuclease V gamma subunit; exonuclease V subunit gamma complement(3691255..3694623) Escherichia coli APEC O78 14483510 YP_007382709.1 CDS APECO78_17720 NC_020163.1 3694636 3694959 R hypothetical protein complement(3694636..3694959) Escherichia coli APEC O78 14483511 YP_007382710.1 CDS APECO78_17725 NC_020163.1 3694944 3695351 R hypothetical protein complement(3694944..3695351) Escherichia coli APEC O78 14483512 YP_007382711.1 CDS APECO78_17730 NC_020163.1 3695348 3695911 R COG4795 Type II secretory pathway, component PulJ; hypothetical protein complement(3695348..3695911) Escherichia coli APEC O78 14483513 YP_007382712.1 CDS APECO78_17735 NC_020163.1 3695902 3696372 R COG2165 Type II secretory pathway, pseudopilin PulG; hypothetical protein complement(3695902..3696372) Escherichia coli APEC O78 14483514 YP_007382713.1 CDS thyA NC_020163.1 3696557 3697351 R COG0207 Thymidylate synthase; thymidylate synthase complement(3696557..3697351) Escherichia coli APEC O78 14483515 YP_007382714.1 CDS APECO78_17745 NC_020163.1 3697358 3698233 R COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase complement(3697358..3698233) Escherichia coli APEC O78 14483516 YP_007382715.1 CDS APECO78_17750 NC_020163.1 3698384 3700630 R COG3605 Signal transduction protein containing GAF and PtsI domains; phosphoenolpyruvate-protein phosphotransferase complement(3698384..3700630) Escherichia coli APEC O78 14483517 YP_007382716.1 CDS APECO78_17755 NC_020163.1 3700643 3701173 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; RNA pyrophosphohydrolase complement(3700643..3701173) Escherichia coli APEC O78 14483518 YP_007382717.1 CDS APECO78_17760 NC_020163.1 3701526 3701672 R hypothetical protein complement(3701526..3701672) Escherichia coli APEC O78 14483519 YP_007382718.1 CDS APECO78_17765 NC_020163.1 3701858 3702547 D COG3066 DNA mismatch repair protein; DNA mismatch repair protein 3701858..3702547 Escherichia coli APEC O78 14483520 YP_007382719.1 CDS APECO78_17770 NC_020163.1 3702616 3703329 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; hypothetical protein 3702616..3703329 Escherichia coli APEC O78 14483521 YP_007382720.1 CDS APECO78_17775 NC_020163.1 3703467 3703685 D COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; hypothetical protein 3703467..3703685 Escherichia coli APEC O78 14483522 YP_007382721.1 CDS APECO78_17780 NC_020163.1 3703793 3704833 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); putative oxidoreductase, NADP(H)-dependent aldo-keto reductase 3703793..3704833 Escherichia coli APEC O78 14483523 YP_007382722.1 CDS APECO78_17785 NC_020163.1 3704865 3706058 R COG0477 Permeases of the major facilitator superfamily; lysophospholipid transporter LplT complement(3704865..3706058) Escherichia coli APEC O78 14483524 YP_007382723.1 CDS APECO78_17790 NC_020163.1 3706051 3708210 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3706051..3708210) Escherichia coli APEC O78 14483525 YP_007382724.1 CDS APECO78_17795 NC_020163.1 3708796 3709827 D COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalR 3708796..3709827 Escherichia coli APEC O78 14483526 YP_007382725.1 CDS APECO78_17800 NC_020163.1 3709834 3711096 R COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(3709834..3711096) Escherichia coli APEC O78 14483527 YP_007382726.1 CDS APECO78_17805 NC_020163.1 3711218 3712153 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator LysR 3711218..3712153 Escherichia coli APEC O78 14483528 YP_007382727.1 CDS APECO78_17810 NC_020163.1 3712140 3712832 R COG1794 Aspartate racemase; racemase complement(3712140..3712832) Escherichia coli APEC O78 14483529 YP_007382728.1 CDS APECO78_17815 NC_020163.1 3712961 3714379 R COG0477 Permeases of the major facilitator superfamily; sugar transporter complement(3712961..3714379) Escherichia coli APEC O78 14483530 YP_007382729.1 CDS APECO78_17820 NC_020163.1 3714694 3715455 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2-deoxy-D-gluconate 3-dehydrogenase complement(3714694..3715455) Escherichia coli APEC O78 14483531 YP_007382730.1 CDS APECO78_17825 NC_020163.1 3715485 3716321 R COG3717 5-keto 4-deoxyuronate isomerase; 5-keto-4-deoxyuronate isomerase complement(3715485..3716321) Escherichia coli APEC O78 14483532 YP_007382731.1 CDS APECO78_17830 NC_020163.1 3716608 3717789 R COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase complement(3716608..3717789) Escherichia coli APEC O78 14483533 YP_007382732.1 CDS APECO78_17835 NC_020163.1 3718044 3719273 D COG0814 Amino acid permeases; transporter protein 3718044..3719273 Escherichia coli APEC O78 14483534 YP_007382733.1 CDS APECO78_17840 NC_020163.1 3719733 3720365 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; yqeH protein 3719733..3720365 Escherichia coli APEC O78 14483535 YP_007382734.1 CDS APECO78_17845 NC_020163.1 3720699 3721508 D COG3710 DNA-binding winged-HTH domains; transcriptional regulator 3720699..3721508 Escherichia coli APEC O78 14483536 YP_007382735.1 CDS APECO78_17850 NC_020163.1 3721501 3721983 D hypothetical protein 3721501..3721983 Escherichia coli APEC O78 14483537 YP_007382736.1 CDS APECO78_17855 NC_020163.1 3722016 3722096 R hypothetical protein complement(3722016..3722096) Escherichia coli APEC O78 14483538 YP_007382737.1 CDS APECO78_17860 NC_020163.1 3722132 3722569 R hypothetical protein complement(3722132..3722569) Escherichia coli APEC O78 14483539 YP_007382738.1 CDS APECO78_17865 NC_020163.1 3722751 3723188 D hypothetical protein 3722751..3723188 Escherichia coli APEC O78 14483540 YP_007382739.1 CDS APECO78_17870 NC_020163.1 3723466 3723957 D COG0457 FOG: TPR repeat; chaperone 3723466..3723957 Escherichia coli APEC O78 14483541 YP_007382740.1 CDS APECO78_17875 NC_020163.1 3724292 3725188 D COG3710 DNA-binding winged-HTH domains; transcriptional regulator 3724292..3725188 Escherichia coli APEC O78 14483542 YP_007382741.1 CDS APECO78_17880 NC_020163.1 3725113 3726018 R COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB complement(3725113..3726018) Escherichia coli APEC O78 14483543 YP_007382742.1 CDS APECO78_17885 NC_020163.1 3725976 3726341 R COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA complement(3725976..3726341) Escherichia coli APEC O78 14483544 YP_007382743.1 CDS APECO78_17890 NC_020163.1 3726543 3727004 D COG0457 FOG: TPR repeat; transcriptional regulator 3726543..3727004 Escherichia coli APEC O78 14483545 YP_007382744.1 CDS APECO78_17895 NC_020163.1 3727575 3727949 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative peptidoglycan binding protein 3727575..3727949 Escherichia coli APEC O78 14483546 YP_007382745.1 CDS APECO78_17900 NC_020163.1 3727994 3728437 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; hypothetical protein complement(3727994..3728437) Escherichia coli APEC O78 14483547 YP_007382746.1 CDS APECO78_17905 NC_020163.1 3728471 3728626 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; response regulator protein complement(3728471..3728626) Escherichia coli APEC O78 14483548 YP_007382747.1 CDS APECO78_17910 NC_020163.1 3728847 3729278 R hypothetical protein complement(3728847..3729278) Escherichia coli APEC O78 14483549 YP_007382748.1 CDS APECO78_17915 NC_020163.1 3729495 3730076 R hypothetical protein complement(3729495..3730076) Escherichia coli APEC O78 14483550 YP_007382749.1 CDS APECO78_17920 NC_020163.1 3730092 3730826 R COG4669 Type III secretory pathway, lipoprotein EscJ; type III secretion system lipoprotein EprK complement(3730092..3730826) Escherichia coli APEC O78 14483551 YP_007382750.1 CDS APECO78_17925 NC_020163.1 3730867 3731082 R type III secretion protein EprJ complement(3730867..3731082) Escherichia coli APEC O78 14483552 YP_007382751.1 CDS APECO78_17930 NC_020163.1 3731259 3731414 R type III secretion protein EprI complement(3731259..3731414) Escherichia coli APEC O78 14483553 YP_007382752.1 CDS APECO78_17935 NC_020163.1 3731428 3732609 R type III secretion EprH protein complement(3731428..3732609) Escherichia coli APEC O78 14483554 YP_007382753.1 CDS APECO78_17940 NC_020163.1 3732867 3733367 D COG2771 DNA-binding HTH domain-containing proteins; response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 3732867..3733367 Escherichia coli APEC O78 14483555 YP_007382754.1 CDS APECO78_17945 NC_020163.1 3733369 3733662 D hypothetical protein 3733369..3733662 Escherichia coli APEC O78 14483556 YP_007382755.1 CDS APECO78_17950 NC_020163.1 3733724 3734086 R COG1377 Flagellar biosynthesis pathway, component FlhB; type III secretion system protein SpaS complement(3733724..3734086) Escherichia coli APEC O78 14483557 YP_007382756.1 CDS APECO78_17955 NC_020163.1 3734113 3734280 R COG1377 Flagellar biosynthesis pathway, component FlhB; type III secretion system protein complement(3734113..3734280) Escherichia coli APEC O78 14483558 YP_007382757.1 CDS APECO78_17960 NC_020163.1 3734277 3734873 R COG1377 Flagellar biosynthesis pathway, component FlhB; type III secretion system protein SpaS complement(3734277..3734873) Escherichia coli APEC O78 14483559 YP_007382758.1 CDS APECO78_17965 NC_020163.1 3734882 3735649 R COG4791 Type III secretory pathway, component EscT; type III secretion protein EpaR complement(3734882..3735649) Escherichia coli APEC O78 14483560 YP_007382759.1 CDS APECO78_17970 NC_020163.1 3735651 3735911 R COG4794 Type III secretory pathway, component EscS; type III secretion protein EpaQ complement(3735651..3735911) Escherichia coli APEC O78 14483561 YP_007382760.1 CDS spaP NC_020163.1 3735921 3736586 R COG4790 Type III secretory pathway, component EscR; type III secretion system protein SpaP complement(3735921..3736586) Escherichia coli APEC O78 14483562 YP_007382761.1 CDS APECO78_17980 NC_020163.1 3736576 3737523 R COG1886 Flagellar motor switch/type III secretory pathway protein; type III secretion system protein SpaO complement(3736576..3737523) Escherichia coli APEC O78 14483563 YP_007382762.1 CDS APECO78_17985 NC_020163.1 3737523 3737870 R protein EivJ complement(3737523..3737870) Escherichia coli APEC O78 14483564 YP_007382763.1 CDS APECO78_17990 NC_020163.1 3737933 3738286 R type III secretion system protein complement(3737933..3738286) Escherichia coli APEC O78 14483565 YP_007382764.1 CDS APECO78_17995 NC_020163.1 3738283 3738396 R hypothetical protein complement(3738283..3738396) Escherichia coli APEC O78 14483566 YP_007382765.1 CDS APECO78_18000 NC_020163.1 3738414 3738830 R type III secretion apparatus protein complement(3738414..3738830) Escherichia coli APEC O78 14483567 YP_007382766.1 CDS APECO78_18015 NC_020163.1 3740144 3740671 R COG4789 Type III secretory pathway, component EscV; type III secretion system protein InvA complement(3740144..3740671) Escherichia coli APEC O78 14483568 YP_007382767.1 CDS APECO78_18020 NC_020163.1 3740674 3740805 R protein EivF complement(3740674..3740805) Escherichia coli APEC O78 14483569 YP_007382768.1 CDS APECO78_18025 NC_020163.1 3741151 3741330 R hypothetical protein complement(3741151..3741330) Escherichia coli APEC O78 14483570 YP_007382769.1 CDS APECO78_18030 NC_020163.1 3741397 3743049 R hypothetical protein complement(3741397..3743049) Escherichia coli APEC O78 14483571 YP_007382770.1 CDS APECO78_18035 NC_020163.1 3743393 3744148 R COG0739 Membrane proteins related to metalloendopeptidases; peptidase complement(3743393..3744148) Escherichia coli APEC O78 14484648 YP_007382771.1 CDS APECO78_18040 NC_020163.1 3744145 3744336 R hypothetical protein complement(3744145..3744336) Escherichia coli APEC O78 14483573 YP_007382772.1 CDS APECO78_18045 NC_020163.1 3744563 3746860 D COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; xanthine dehydrogenase subunit XdhA 3744563..3746860 Escherichia coli APEC O78 14483574 YP_007382773.1 CDS APECO78_18050 NC_020163.1 3746871 3747749 D COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; xanthine dehydrogenase subunit XdhB 3746871..3747749 Escherichia coli APEC O78 14483575 YP_007382774.1 CDS APECO78_18055 NC_020163.1 3747746 3748225 D COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; xanthine dehydrogenase iron-sulfur-binding subunit 3747746..3748225 Escherichia coli APEC O78 14483576 YP_007382775.1 CDS APECO78_18060 NC_020163.1 3748265 3750043 R COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; DNA-binding transcriptional regulator complement(3748265..3750043) Escherichia coli APEC O78 14483577 YP_007382776.1 CDS APECO78_18065 NC_020163.1 3750522 3751709 D COG0078 Ornithine carbamoyltransferase; putative carbamoyltransferase 3750522..3751709 Escherichia coli APEC O78 14483578 YP_007382777.1 CDS APECO78_18070 NC_020163.1 3751767 3752963 D COG1171 Threonine dehydratase; diaminopropionate ammonia-lyase 3751767..3752963 Escherichia coli APEC O78 14483579 YP_007382778.1 CDS APECO78_18075 NC_020163.1 3753021 3754232 D COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; peptidase 3753021..3754232 Escherichia coli APEC O78 14483580 YP_007382779.1 CDS APECO78_18080 NC_020163.1 3754285 3755670 D COG0044 Dihydroorotase and related cyclic amidohydrolases; phenylhydantoinase 3754285..3755670 Escherichia coli APEC O78 14483581 YP_007382780.1 CDS APECO78_18085 NC_020163.1 3755718 3756650 D COG0549 Carbamate kinase; amino acid kinase 3755718..3756650 Escherichia coli APEC O78 14483582 YP_007382781.1 CDS APECO78_18090 NC_020163.1 3756691 3758316 R COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; hypothetical protein complement(3756691..3758316) Escherichia coli APEC O78 14483583 YP_007382782.1 CDS APECO78_18095 NC_020163.1 3758364 3759134 R COG0769 UDP-N-acetylmuramyl tripeptide synthase; hypothetical protein complement(3758364..3759134) Escherichia coli APEC O78 14483584 YP_007382783.1 CDS APECO78_18100 NC_020163.1 3759237 3759815 D COG2068 Uncharacterized MobA-related protein; hypothetical protein 3759237..3759815 Escherichia coli APEC O78 14483585 YP_007382784.1 CDS APECO78_18105 NC_020163.1 3760137 3763235 D COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; selenate reductase subunit YgfK 3760137..3763235 Escherichia coli APEC O78 14483586 YP_007382785.1 CDS APECO78_18110 NC_020163.1 3763238 3764566 D COG0402 Cytosine deaminase and related metal-dependent hydrolases; chlorohydrolase/aminohydrolase 3763238..3764566 Escherichia coli APEC O78 14483587 YP_007382786.1 CDS APECO78_18115 NC_020163.1 3764617 3765396 D COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; oxidoreductase 3764617..3765396 Escherichia coli APEC O78 14483588 YP_007382787.1 CDS APECO78_18120 NC_020163.1 3765393 3768263 D COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; hypoxanthine oxidase 3765393..3768263 Escherichia coli APEC O78 14483589 YP_007382788.1 CDS APECO78_18125 NC_020163.1 3768428 3769828 D COG2233 Xanthine/uracil permeases; purine permease YgfO 3768428..3769828 Escherichia coli APEC O78 14483590 YP_007382789.1 CDS APECO78_18130 NC_020163.1 3769846 3771162 D COG0402 Cytosine deaminase and related metal-dependent hydrolases; guanine deaminase 3769846..3771162 Escherichia coli APEC O78 14483591 YP_007382790.1 CDS APECO78_18135 NC_020163.1 3771198 3772565 D COG2252 Permeases; hypothetical protein 3771198..3772565 Escherichia coli APEC O78 14483592 YP_007382791.1 CDS APECO78_18140 NC_020163.1 3772601 3773089 R COG1142 Fe-S-cluster-containing hydrogenase components 2; putative oxidoreductase complement(3772601..3773089) Escherichia coli APEC O78 14483593 YP_007382792.1 CDS APECO78_18145 NC_020163.1 3773089 3775008 R COG1142 Fe-S-cluster-containing hydrogenase components 2; oxidoreductase Fe-S binding subunit complement(3773089..3775008) Escherichia coli APEC O78 14483594 YP_007382793.1 CDS APECO78_18150 NC_020163.1 3775444 3776892 D COG2233 Xanthine/uracil permeases; purine permease ygfU 3775444..3776892 Escherichia coli APEC O78 14483595 YP_007382794.1 CDS APECO78_18155 NC_020163.1 3776894 3777019 D hypothetical protein 3776894..3777019 Escherichia coli APEC O78 14483596 YP_007382795.1 CDS APECO78_18160 NC_020163.1 3777142 3777690 D COG1443 Isopentenyldiphosphate isomerase; isopentenyl-diphosphate delta-isomerase 3777142..3777690 Escherichia coli APEC O78 14483597 YP_007382796.1 CDS APECO78_18165 NC_020163.1 3777733 3779250 R COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA synthetase complement(3777733..3779250) Escherichia coli APEC O78 14483598 YP_007382797.1 CDS APECO78_18170 NC_020163.1 3779260 3780141 R COG1186 Protein chain release factor B; peptide chain release factor RF2 complement(3779260..3780141) Escherichia coli APEC O78 14483599 YP_007382798.1 CDS APECO78_18175 NC_020163.1 3780449 3782182 R COG0608 Single-stranded DNA-specific exonuclease; ssDNA exonuclease, 5' -> 3'-specific complement(3780449..3782182) Escherichia coli APEC O78 14483600 YP_007382799.1 CDS APECO78_18180 NC_020163.1 3782188 3782898 R COG1651 Protein-disulfide isomerase; protein disulfide isomerase II DsbC complement(3782188..3782898) Escherichia coli APEC O78 14483601 YP_007382800.1 CDS APECO78_18185 NC_020163.1 3782923 3783819 R COG4974 Site-specific recombinase XerD; site-specific tyrosine recombinase XerD complement(3782923..3783819) Escherichia coli APEC O78 14483602 YP_007382801.1 CDS APECO78_18190 NC_020163.1 3783931 3784452 D COG0716 Flavodoxins; flavodoxin FldB 3783931..3784452 Escherichia coli APEC O78 14483603 YP_007382802.1 CDS APECO78_18195 NC_020163.1 3784492 3784899 R hypothetical protein complement(3784492..3784899) Escherichia coli APEC O78 14483604 YP_007382803.1 CDS APECO78_18200 NC_020163.1 3784880 3785146 R COG2938 Uncharacterized conserved protein; hypothetical protein complement(3784880..3785146) Escherichia coli APEC O78 14483605 YP_007382804.1 CDS APECO78_18205 NC_020163.1 3785389 3786369 D COG0354 Predicted aminomethyltransferase related to GcvT; global regulator 3785389..3786369 Escherichia coli APEC O78 14483606 YP_007382805.1 CDS APECO78_18210 NC_020163.1 3786446 3787105 R COG1272 Predicted membrane protein, hemolysin III homolog; hemolysin complement(3786446..3787105) Escherichia coli APEC O78 14483607 YP_007382806.1 CDS APECO78_18215 NC_020163.1 3787269 3787580 R COG3097 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3787269..3787580) Escherichia coli APEC O78 14483608 YP_007382807.1 CDS APECO78_18220 NC_020163.1 3787625 3789058 D COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; 6-phospho-beta-glucosidase BglA 3787625..3789058 Escherichia coli APEC O78 14483609 YP_007382808.1 CDS APECO78_18225 NC_020163.1 3789115 3789858 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain complement(3789115..3789858) Escherichia coli APEC O78 14483610 YP_007382809.1 CDS APECO78_18230 NC_020163.1 3790124 3792997 R COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; glycine dehydrogenase complement(3790124..3792997) Escherichia coli APEC O78 14483611 YP_007382810.1 CDS APECO78_18235 NC_020163.1 3793115 3793504 R COG0509 Glycine cleavage system H protein (lipoate-binding); glycine cleavage system protein H complement(3793115..3793504) Escherichia coli APEC O78 14483612 YP_007382811.1 CDS APECO78_18240 NC_020163.1 3793528 3794622 R COG0404 Glycine cleavage system T protein (aminomethyltransferase); glycine cleavage system aminomethyltransferase T complement(3793528..3794622) Escherichia coli APEC O78 14483613 YP_007382812.1 CDS APECO78_18245 NC_020163.1 3795070 3796272 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; oxidoreductase complement(3795070..3796272) Escherichia coli APEC O78 14483614 YP_007382813.1 CDS APECO78_18250 NC_020163.1 3796295 3797473 R COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3796295..3797473) Escherichia coli APEC O78 14483615 YP_007382814.1 CDS APECO78_18255 NC_020163.1 3797470 3798795 R COG0006 Xaa-Pro aminopeptidase; proline aminopeptidase P II complement(3797470..3798795) Escherichia coli APEC O78 14483616 YP_007382815.1 CDS APECO78_18260 NC_020163.1 3798821 3799399 R COG3079 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3798821..3799399) Escherichia coli APEC O78 14483617 YP_007382816.1 CDS APECO78_18265 NC_020163.1 3799567 3799896 D COG3027 Uncharacterized protein conserved in bacteria; Z-ring-associated protein 3799567..3799896 Escherichia coli APEC O78 14483618 YP_007382817.1 CDS APECO78_18270 NC_020163.1 3800196 3800744 D COG0212 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase family protein 3800196..3800744 Escherichia coli APEC O78 14483619 YP_007382818.1 CDS APECO78_18275 NC_020163.1 3801525 3802757 R COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase complement(3801525..3802757) Escherichia coli APEC O78 14483620 YP_007382819.1 CDS APECO78_18280 NC_020163.1 3803013 3803672 R COG0120 Ribose 5-phosphate isomerase; ribose-5-phosphate isomerase A complement(3803013..3803672) Escherichia coli APEC O78 14483621 YP_007382820.1 CDS APECO78_18285 NC_020163.1 3803728 3803958 R COG0583 Transcriptional regulator; hypothetical protein complement(3803728..3803958) Escherichia coli APEC O78 14483622 YP_007382821.1 CDS APECO78_18290 NC_020163.1 3804100 3804993 D COG0583 Transcriptional regulator; Chromosome initiation inhibitor 3804100..3804993 Escherichia coli APEC O78 14483623 YP_007382822.1 CDS APECO78_18295 NC_020163.1 3805197 3807341 D COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit; methylmalonyl-CoA mutase 3805197..3807341 Escherichia coli APEC O78 14483624 YP_007382823.1 CDS APECO78_18300 NC_020163.1 3807334 3808329 D COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family; membrane ATPase/protein kinase 3807334..3808329 Escherichia coli APEC O78 14483625 YP_007382824.1 CDS APECO78_18305 NC_020163.1 3808340 3809125 D COG1024 Enoyl-CoA hydratase/carnithine racemase; methylmalonyl-CoA decarboxylase 3808340..3809125 Escherichia coli APEC O78 14483626 YP_007382825.1 CDS APECO78_18310 NC_020163.1 3809149 3810627 D COG0427 Acetyl-CoA hydrolase; succinate CoA transferase 3809149..3810627 Escherichia coli APEC O78 14483627 YP_007382826.1 CDS APECO78_18315 NC_020163.1 3810624 3811520 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator complement(3810624..3811520) Escherichia coli APEC O78 14483628 YP_007382827.1 CDS APECO78_18320 NC_020163.1 3811687 3812427 R COG2968 Uncharacterized conserved protein; oxidative stress defense protein complement(3811687..3812427) Escherichia coli APEC O78 14483629 YP_007382828.1 CDS APECO78_18325 NC_020163.1 3812520 3813155 R COG1279 Lysine efflux permease; arginine exporter protein complement(3812520..3813155) Escherichia coli APEC O78 14483630 YP_007382829.1 CDS APECO78_18330 NC_020163.1 3813294 3814154 R COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel MscS complement(3813294..3814154) Escherichia coli APEC O78 14483631 YP_007382830.1 CDS APECO78_18335 NC_020163.1 3814177 3814593 R Fructose-bisphosphate aldolase class II complement(3814177..3814593) Escherichia coli APEC O78 14483632 YP_007382831.1 CDS APECO78_18340 NC_020163.1 3814512 3815591 R COG0191 Fructose/tagatose bisphosphate aldolase; Fructose-bisphosphate aldolase class II complement(3814512..3815591) Escherichia coli APEC O78 14483633 YP_007382832.1 CDS APECO78_18345 NC_020163.1 3815806 3816969 R COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase complement(3815806..3816969) Escherichia coli APEC O78 14483634 YP_007382833.1 CDS APECO78_18350 NC_020163.1 3817019 3818038 R COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; erythrose 4-phosphate dehydrogenase complement(3817019..3818038) Escherichia coli APEC O78 14483635 YP_007382834.1 CDS APECO78_18355 NC_020163.1 3818410 3818841 D COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif; hypothetical protein 3818410..3818841 Escherichia coli APEC O78 14483636 YP_007382835.1 CDS APECO78_18360 NC_020163.1 3818864 3819442 D transporter 3818864..3819442 Escherichia coli APEC O78 14483637 YP_007382836.1 CDS APECO78_18365 NC_020163.1 3819443 3820150 D COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; lipoprotein 3819443..3820150 Escherichia coli APEC O78 14483638 YP_007382837.1 CDS APECO78_18370 NC_020163.1 3820138 3820815 D COG1122 ABC-type cobalt transport system, ATPase component; ABC transporter ATP-binding protein 3820138..3820815 Escherichia coli APEC O78 14483639 YP_007382838.1 CDS APECO78_18375 NC_020163.1 3820809 3821486 D COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; putative ABC transporter ATP-binding subunit 3820809..3821486 Escherichia coli APEC O78 14483640 YP_007382839.1 CDS APECO78_18380 NC_020163.1 3821458 3822171 R COG1072 Panthothenate kinase; nucleoside triphosphate hydrolase domain-containing protein complement(3821458..3822171) Escherichia coli APEC O78 14483641 YP_007382840.1 CDS APECO78_18385 NC_020163.1 3822168 3822677 R COG3722 Transcriptional regulator; DNA-binding transcriptional regulator complement(3822168..3822677) Escherichia coli APEC O78 14483642 YP_007382841.1 CDS APECO78_18390 NC_020163.1 3822699 3823664 R COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; fructose-1,6-bisphosphatase II-like protein complement(3822699..3823664) Escherichia coli APEC O78 14483643 YP_007382842.1 CDS APECO78_18395 NC_020163.1 3823661 3824938 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; dehydrogenase complement(3823661..3824938) Escherichia coli APEC O78 14483644 YP_007382843.1 CDS APECO78_18400 NC_020163.1 3824953 3826341 R COG2213 Phosphotransferase system, mannitol-specific IIBC component; mannitol-specific PTS system enzyme II component complement(3824953..3826341) Escherichia coli APEC O78 14483645 YP_007382844.1 CDS cmtB NC_020163.1 3826369 3826812 R COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system mannitol-specific transporter subunit IIA complement(3826369..3826812) Escherichia coli APEC O78 14483646 YP_007382845.1 CDS APECO78_18410 NC_020163.1 3827126 3829117 R COG0021 Transketolase; transketolase complement(3827126..3829117) Escherichia coli APEC O78 14483647 YP_007382846.1 CDS APECO78_18415 NC_020163.1 3829395 3830153 D COG0501 Zn-dependent protease with chaperone function; peptidase 3829395..3830153 Escherichia coli APEC O78 14483648 YP_007382847.1 CDS APECO78_18420 NC_020163.1 3830359 3831279 R COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; agmatinase complement(3830359..3831279) Escherichia coli APEC O78 14483649 YP_007382848.1 CDS APECO78_18425 NC_020163.1 3831415 3832146 R hypothetical protein complement(3831415..3832146) Escherichia coli APEC O78 14483650 YP_007382849.1 CDS APECO78_18430 NC_020163.1 3832292 3834268 R COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase complement(3832292..3834268) Escherichia coli APEC O78 14483651 YP_007382850.1 CDS APECO78_18435 NC_020163.1 3834277 3834423 R hypothetical protein complement(3834277..3834423) Escherichia coli APEC O78 14483652 YP_007382851.1 CDS APECO78_18440 NC_020163.1 3834756 3835007 R hypothetical protein complement(3834756..3835007) Escherichia coli APEC O78 14483653 YP_007382852.1 CDS APECO78_18445 NC_020163.1 3835063 3836217 D COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 3835063..3836217 Escherichia coli APEC O78 14483654 YP_007382853.1 CDS APECO78_18450 NC_020163.1 3836653 3838047 D COG0477 Permeases of the major facilitator superfamily; D-galactose transporter GalP 3836653..3838047 Escherichia coli APEC O78 14483655 YP_007382854.1 CDS APECO78_18455 NC_020163.1 3838124 3838621 D COG3091 Uncharacterized protein conserved in bacteria; hypothetical protein 3838124..3838621 Escherichia coli APEC O78 14483656 YP_007382855.1 CDS APECO78_18460 NC_020163.1 3838716 3839423 D COG2356 Endonuclease I; DNA-specific endonuclease I 3838716..3839423 Escherichia coli APEC O78 14483657 YP_007382856.1 CDS APECO78_18465 NC_020163.1 3839503 3840234 D COG1385 Uncharacterized protein conserved in bacteria; 16S ribosomal RNA methyltransferase RsmE 3839503..3840234 Escherichia coli APEC O78 14483658 YP_007382857.1 CDS APECO78_18470 NC_020163.1 3840247 3841197 D COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); glutathione synthetase 3840247..3841197 Escherichia coli APEC O78 14483659 YP_007382858.1 CDS APECO78_18475 NC_020163.1 3841306 3841869 D COG1678 Putative transcriptional regulator; hypothetical protein 3841306..3841869 Escherichia coli APEC O78 14483660 YP_007382859.1 CDS APECO78_18480 NC_020163.1 3841869 3842285 D COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 3841869..3842285 Escherichia coli APEC O78 14483661 YP_007382860.1 CDS APECO78_18485 NC_020163.1 3842448 3843428 R COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; transporter complement(3842448..3843428) Escherichia coli APEC O78 14483662 YP_007382861.1 CDS APECO78_18490 NC_020163.1 3843446 3844150 D COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 3843446..3844150 Escherichia coli APEC O78 14483663 YP_007382862.1 CDS APECO78_18495 NC_020163.1 3844168 3844734 D COG0762 Predicted integral membrane protein; hypothetical protein 3844168..3844734 Escherichia coli APEC O78 14483664 YP_007382863.1 CDS APECO78_18500 NC_020163.1 3844731 3845021 D COG1872 Uncharacterized conserved protein; hypothetical protein 3844731..3845021 Escherichia coli APEC O78 14483665 YP_007382864.1 CDS APECO78_18505 NC_020163.1 3845029 3845622 D COG0127 Xanthosine triphosphate pyrophosphatase; dITP/XTP pyrophosphatase 3845029..3845622 Escherichia coli APEC O78 14483666 YP_007382865.1 CDS APECO78_18510 NC_020163.1 3845615 3846751 D COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; HemN family oxidoreductase 3845615..3846751 Escherichia coli APEC O78 14483667 YP_007382866.1 CDS APECO78_18515 NC_020163.1 3846906 3847913 R hypothetical protein complement(3846906..3847913) Escherichia coli APEC O78 14483668 YP_007382867.1 CDS ansB NC_020163.1 3848030 3849076 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II complement(3848030..3849076) Escherichia coli APEC O78 14483669 YP_007382868.1 CDS APECO78_18525 NC_020163.1 3849252 3849971 R hypothetical protein complement(3849252..3849971) Escherichia coli APEC O78 14483670 YP_007382869.1 CDS APECO78_18530 NC_020163.1 3849992 3850132 R hypothetical protein complement(3849992..3850132) Escherichia coli APEC O78 14483671 YP_007382870.1 CDS APECO78_18535 NC_020163.1 3850155 3850481 R COG3171 Uncharacterized protein conserved in bacteria; hypothetical protein complement(3850155..3850481) Escherichia coli APEC O78 14483672 YP_007382871.1 CDS APECO78_18540 NC_020163.1 3850481 3851200 R COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(3850481..3851200) Escherichia coli APEC O78 14483673 YP_007382872.1 CDS APECO78_18545 NC_020163.1 3851361 3852413 D COG1194 A/G-specific DNA glycosylase; adenine DNA glycosylase 3851361..3852413 Escherichia coli APEC O78 14483674 YP_007382873.1 CDS APECO78_18550 NC_020163.1 3852441 3852716 D COG2924 Fe-S cluster protector protein; oxidative damage protection protein 3852441..3852716 Escherichia coli APEC O78 14483675 YP_007382874.1 CDS mltC NC_020163.1 3852781 3853860 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); murein transglycosylase C 3852781..3853860 Escherichia coli APEC O78 14483676 YP_007382875.1 CDS APECO78_18560 NC_020163.1 3854062 3855318 D COG0477 Permeases of the major facilitator superfamily; nucleoside permease 3854062..3855318 Escherichia coli APEC O78 14483677 YP_007382876.1 CDS APECO78_18565 NC_020163.1 3855368 3857503 R COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase complement(3855368..3857503) Escherichia coli APEC O78 14483678 YP_007382877.1 CDS APECO78_18570 NC_020163.1 3857901 3858608 D COG1811 Uncharacterized membrane protein, possible Na+ channel or pump; hypothetical protein 3857901..3858608 Escherichia coli APEC O78 14483679 YP_007382878.1 CDS APECO78_18575 NC_020163.1 3858938 3859474 R COG3149 Type II secretory pathway, component PulM; general secretion pathway protein YghD complement(3858938..3859474) Escherichia coli APEC O78 14484649 YP_007382879.1 CDS APECO78_18580 NC_020163.1 3859476 3860654 R COG3297 Type II secretory pathway, component PulL; GspL-like protein complement(3859476..3860654) Escherichia coli APEC O78 14483681 YP_007382880.1 CDS APECO78_18585 NC_020163.1 3860651 3861628 R COG3156 Type II secretory pathway, component PulK; General secretion pathway protein K complement(3860651..3861628) Escherichia coli APEC O78 14483682 YP_007382881.1 CDS APECO78_18590 NC_020163.1 3861631 3862230 R COG4795 Type II secretory pathway, component PulJ; type II secretion protein GspJ complement(3861631..3862230) Escherichia coli APEC O78 14483683 YP_007382882.1 CDS APECO78_18595 NC_020163.1 3862227 3862598 R COG2165 Type II secretory pathway, pseudopilin PulG; type II secretion protein complement(3862227..3862598) Escherichia coli APEC O78 14483684 YP_007382883.1 CDS APECO78_18600 NC_020163.1 3862595 3863158 R COG2165 Type II secretory pathway, pseudopilin PulG; type II secretion protein GspH complement(3862595..3863158) Escherichia coli APEC O78 14483685 YP_007382884.1 CDS APECO78_18605 NC_020163.1 3863162 3863617 R COG2165 Type II secretory pathway, pseudopilin PulG; type II secretion protein complement(3863162..3863617) Escherichia coli APEC O78 14483686 YP_007382885.1 CDS APECO78_18620 NC_020163.1 3864856 3866349 R COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; general secretion pathway protein E complement(3864856..3866349) Escherichia coli APEC O78 14483687 YP_007382886.1 CDS APECO78_18625 NC_020163.1 3866349 3867308 R COG1450 Type II secretory pathway, component PulD; General secretion pathway protein D complement(3866349..3867308) Escherichia coli APEC O78 14483688 YP_007382887.1 CDS APECO78_18630 NC_020163.1 3867305 3867721 R COG1620 L-lactate permease; glycolate transporter complement(3867305..3867721) Escherichia coli APEC O78 14483689 YP_007382888.1 CDS APECO78_18635 NC_020163.1 3868077 3870248 R COG2225 Malate synthase; malate synthase G complement(3868077..3870248) Escherichia coli APEC O78 14483690 YP_007382889.1 CDS APECO78_18640 NC_020163.1 3870270 3870674 R COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol; hypothetical protein complement(3870270..3870674) Escherichia coli APEC O78 14483691 YP_007382890.1 CDS glcF NC_020163.1 3870679 3871902 R COG0247 Fe-S oxidoreductase; glycolate oxidase iron-sulfur subunit complement(3870679..3871902) Escherichia coli APEC O78 14483692 YP_007382891.1 CDS glcE NC_020163.1 3871913 3872965 R COG0277 FAD/FMN-containing dehydrogenases; glycolate oxidase FAD binding subunit complement(3871913..3872965) Escherichia coli APEC O78 14483693 YP_007382892.1 CDS APECO78_18655 NC_020163.1 3872965 3874464 R COG0277 FAD/FMN-containing dehydrogenases; glycolate oxidase subunit GlcD complement(3872965..3874464) Escherichia coli APEC O78 14483694 YP_007382893.1 CDS APECO78_18660 NC_020163.1 3874715 3875479 D COG2186 Transcriptional regulators; DNA-binding transcriptional regulator GlcC 3874715..3875479 Escherichia coli APEC O78 14483695 YP_007382894.1 CDS APECO78_18665 NC_020163.1 3877032 3878720 D COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; acyl-CoA synthetase 3877032..3878720 Escherichia coli APEC O78 14483696 YP_007382895.1 CDS APECO78_18670 NC_020163.1 3878717 3879631 D COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein 3878717..3879631 Escherichia coli APEC O78 14483697 YP_007382896.1 CDS APECO78_18675 NC_020163.1 3879663 3879911 D COG0236 Acyl carrier protein; hypothetical protein 3879663..3879911 Escherichia coli APEC O78 14483698 YP_007382897.1 CDS APECO78_18680 NC_020163.1 3879911 3881083 D COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; hypothetical protein 3879911..3881083 Escherichia coli APEC O78 14483699 YP_007382898.1 CDS APECO78_18685 NC_020163.1 3881119 3882198 R COG0795 Predicted permeases; hypothetical protein complement(3881119..3882198) Escherichia coli APEC O78 14483700 YP_007382899.1 CDS APECO78_18690 NC_020163.1 3882195 3883265 R COG0795 Predicted permeases; Permease YjgP/YjgQ family protein precursor complement(3882195..3883265) Escherichia coli APEC O78 14483701 YP_007382900.1 CDS APECO78_18695 NC_020163.1 3883296 3883856 R COG3054 Predicted transcriptional regulator; ybl137 complement(3883296..3883856) Escherichia coli APEC O78 14483702 YP_007382901.1 CDS APECO78_18700 NC_020163.1 3883868 3884692 R COG0372 Citrate synthase; hypothetical protein complement(3883868..3884692) Escherichia coli APEC O78 14483703 YP_007382902.1 CDS APECO78_18705 NC_020163.1 3884692 3886041 R COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; inner membrane protein complement(3884692..3886041) Escherichia coli APEC O78 14483704 YP_007382903.1 CDS APECO78_18710 NC_020163.1 3886087 3886845 R COG0178 Excinuclease ATPase subunit; hypothetical protein complement(3886087..3886845) Escherichia coli APEC O78 14483705 YP_007382904.1 CDS APECO78_18715 NC_020163.1 3886877 3887590 R COG0125 Thymidylate kinase; hypothetical protein complement(3886877..3887590) Escherichia coli APEC O78 14483706 YP_007382905.1 CDS APECO78_18720 NC_020163.1 3887764 3888456 D COG0125 Thymidylate kinase; hypothetical protein 3887764..3888456 Escherichia coli APEC O78 14483707 YP_007382906.1 CDS APECO78_18725 NC_020163.1 3888505 3890004 R COG0306 Phosphate/sulphate permeases; phosphate transporter complement(3888505..3890004) Escherichia coli APEC O78 14483708 YP_007382907.1 CDS APECO78_18730 NC_020163.1 3890296 3892155 R COG0754 Glutathionylspermidine synthase; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3890296..3892155) Escherichia coli APEC O78 14483709 YP_007382908.1 CDS APECO78_18735 NC_020163.1 3892360 3893226 D COG0625 Glutathione S-transferase; S-transferase 3892360..3893226 Escherichia coli APEC O78 14483710 YP_007382909.1 CDS APECO78_18740 NC_020163.1 3893349 3893597 R COG0298 Hydrogenase maturation factor; hydrogenase 2 accessory protein HypG complement(3893349..3893597) Escherichia coli APEC O78 14483711 YP_007382910.1 CDS APECO78_18745 NC_020163.1 3893610 3893951 R COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein HybF complement(3893610..3893951) Escherichia coli APEC O78 14483712 YP_007382911.1 CDS APECO78_18750 NC_020163.1 3893944 3894432 R hydrogenase 2-specific chaperone complement(3893944..3894432) Escherichia coli APEC O78 14483713 YP_007382912.1 CDS hybD NC_020163.1 3894425 3894919 R COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 2 maturation endopeptidase complement(3894425..3894919) Escherichia coli APEC O78 14483714 YP_007382913.1 CDS APECO78_18760 NC_020163.1 3894919 3896622 R COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 2 large subunit complement(3894919..3896622) Escherichia coli APEC O78 14483715 YP_007382914.1 CDS APECO78_18765 NC_020163.1 3896619 3897797 R COG5557 Polysulphide reductase; hydrogenase 2 b cytochrome subunit complement(3896619..3897797) Escherichia coli APEC O78 14483716 YP_007382915.1 CDS APECO78_18770 NC_020163.1 3897787 3898773 R COG0437 Fe-S-cluster-containing hydrogenase components 1; hydrogenase 2 protein HybA complement(3897787..3898773) Escherichia coli APEC O78 14483717 YP_007382916.1 CDS APECO78_18775 NC_020163.1 3898776 3899894 R COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase 2 small subunit complement(3898776..3899894) Escherichia coli APEC O78 14483718 YP_007382917.1 CDS APECO78_18780 NC_020163.1 3900083 3900370 R hypothetical protein complement(3900083..3900370) Escherichia coli APEC O78 14483719 YP_007382918.1 CDS APECO78_18785 NC_020163.1 3900489 3901376 R COG0412 Dienelactone hydrolase and related enzymes; hypothetical protein complement(3900489..3901376) Escherichia coli APEC O78 14483720 YP_007382919.1 CDS APECO78_18790 NC_020163.1 3901533 3902573 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); L-glyceraldehyde 3-phosphate reductase 3901533..3902573 Escherichia coli APEC O78 14483721 YP_007382920.1 CDS APECO78_18795 NC_020163.1 3902613 3903107 R COG2862 Predicted membrane protein; hypothetical protein complement(3902613..3903107) Escherichia coli APEC O78 14483722 YP_007382921.1 CDS APECO78_18800 NC_020163.1 3903298 3904182 D COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 3903298..3904182 Escherichia coli APEC O78 14483723 YP_007382922.1 CDS APECO78_18805 NC_020163.1 3904255 3904446 R hypothetical protein complement(3904255..3904446) Escherichia coli APEC O78 14483724 YP_007382923.1 CDS APECO78_18810 NC_020163.1 3904454 3904879 R COG0848 Biopolymer transport protein; biopolymer transport protein ExbD complement(3904454..3904879) Escherichia coli APEC O78 14483725 YP_007382924.1 CDS APECO78_18815 NC_020163.1 3904886 3905620 R COG0811 Biopolymer transport proteins; biopolymer transport protein ExbB complement(3904886..3905620) Escherichia coli APEC O78 14483726 YP_007382925.1 CDS APECO78_18820 NC_020163.1 3905743 3905829 R hypothetical protein complement(3905743..3905829) Escherichia coli APEC O78 14483727 YP_007382926.1 CDS APECO78_18825 NC_020163.1 3905872 3907059 D COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine beta-lyase 3905872..3907059 Escherichia coli APEC O78 14483728 YP_007382927.1 CDS APECO78_18830 NC_020163.1 3907199 3907858 D COG0586 Uncharacterized membrane-associated protein; hypothetical protein 3907199..3907858 Escherichia coli APEC O78 14483729 YP_007382928.1 CDS APECO78_18835 NC_020163.1 3907898 3908854 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator, ARAC-type complement(3907898..3908854) Escherichia coli APEC O78 14483730 YP_007382929.1 CDS APECO78_18840 NC_020163.1 3908991 3910154 D COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; aldehyde reductase 3908991..3910154 Escherichia coli APEC O78 14483731 YP_007382930.1 CDS APECO78_18845 NC_020163.1 3910259 3911086 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase A 3910259..3911086 Escherichia coli APEC O78 14483732 YP_007382931.1 CDS APECO78_18850 NC_020163.1 3911286 3912212 D hypothetical protein 3911286..3912212 Escherichia coli APEC O78 14483733 YP_007382932.1 CDS APECO78_18855 NC_020163.1 3912263 3912520 D outer membrane lipoprotein 3912263..3912520 Escherichia coli APEC O78 14483734 YP_007382933.1 CDS APECO78_18860 NC_020163.1 3912563 3914782 R COG1032 Fe-S oxidoreductase; hypothetical protein complement(3912563..3914782) Escherichia coli APEC O78 14483735 YP_007382934.1 CDS APECO78_18865 NC_020163.1 3914893 3916305 R COG2132 Putative multicopper oxidases; FtsI repressor complement(3914893..3916305) Escherichia coli APEC O78 14483736 YP_007382935.1 CDS APECO78_18870 NC_020163.1 3916380 3917117 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3916380..3917117) Escherichia coli APEC O78 14483737 YP_007382936.1 CDS APECO78_18875 NC_020163.1 3917351 3919609 R COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA topoisomerase IV subunit A complement(3917351..3919609) Escherichia coli APEC O78 14483738 YP_007382937.1 CDS APECO78_18880 NC_020163.1 3919747 3921354 R COG4166 ABC-type oligopeptide transport system, periplasmic component; hypothetical protein complement(3919747..3921354) Escherichia coli APEC O78 14483739 YP_007382938.1 CDS APECO78_18885 NC_020163.1 3921487 3921882 R COG1396 Predicted transcriptional regulators; HTH-type transcriptional regulator ygiT complement(3921487..3921882) Escherichia coli APEC O78 14483740 YP_007382939.1 CDS APECO78_18890 NC_020163.1 3921884 3922180 R hypothetical protein complement(3921884..3922180) Escherichia coli APEC O78 14483741 YP_007382940.1 CDS APECO78_18895 NC_020163.1 3922385 3922867 R COG3449 DNA gyrase inhibitor; transcriptional regulator complement(3922385..3922867) Escherichia coli APEC O78 14483742 YP_007382941.1 CDS APECO78_18900 NC_020163.1 3922920 3923312 R COG3111 Uncharacterized conserved protein; hypothetical protein complement(3922920..3923312) Escherichia coli APEC O78 14483743 YP_007382942.1 CDS APECO78_18905 NC_020163.1 3923463 3924122 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator QseB 3923463..3924122 Escherichia coli APEC O78 14483744 YP_007382943.1 CDS APECO78_18910 NC_020163.1 3924119 3925468 D COG0642 Signal transduction histidine kinase; sensor protein QseC 3924119..3925468 Escherichia coli APEC O78 14483745 YP_007382944.1 CDS APECO78_18915 NC_020163.1 3925578 3926159 D COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); NADPH quinone reductase MdaB 3925578..3926159 Escherichia coli APEC O78 14483746 YP_007382945.1 CDS APECO78_18920 NC_020163.1 3926190 3926504 D COG1359 Uncharacterized conserved protein; hypothetical protein 3926190..3926504 Escherichia coli APEC O78 14483747 YP_007382946.1 CDS APECO78_18925 NC_020163.1 3926548 3927192 R COG2211 Na+/melibiose symporter and related transporters; Major facilitator superfamily domain-containing protein 2 complement(3926548..3927192) Escherichia coli APEC O78 14483748 YP_007382947.1 CDS APECO78_18930 NC_020163.1 3927199 3927879 R COG2211 Na+/melibiose symporter and related transporters; sugar transport protein complement(3927199..3927879) Escherichia coli APEC O78 14483749 YP_007382948.1 CDS APECO78_18935 NC_020163.1 3928166 3928918 D COG2188 Transcriptional regulators; GntR family transcriptional regulator 3928166..3928918 Escherichia coli APEC O78 14483750 YP_007382949.1 CDS APECO78_18940 NC_020163.1 3928932 3930008 D COG1397 ADP-ribosylglycohydrolase; hypothetical protein 3928932..3930008 Escherichia coli APEC O78 14483751 YP_007382950.1 CDS APECO78_18945 NC_020163.1 3930008 3931006 D COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; hypothetical protein 3930008..3931006 Escherichia coli APEC O78 14483752 YP_007382951.1 CDS APECO78_18950 NC_020163.1 3931011 3931925 D COG0524 Sugar kinases, ribokinase family; ribokinase 3931011..3931925 Escherichia coli APEC O78 14483753 YP_007382952.1 CDS APECO78_18955 NC_020163.1 3931953 3933077 D COG4222 Uncharacterized protein conserved in bacteria; hypothetical protein 3931953..3933077 Escherichia coli APEC O78 14483754 YP_007382953.1 CDS APECO78_18960 NC_020163.1 3933212 3933907 D hypothetical protein 3933212..3933907 Escherichia coli APEC O78 14483755 YP_007382954.1 CDS APECO78_18965 NC_020163.1 3933921 3934790 D outer membrane protein 3933921..3934790 Escherichia coli APEC O78 14483756 YP_007382955.1 CDS APECO78_18970 NC_020163.1 3934835 3936727 R COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA topoisomerase IV subunit B complement(3934835..3936727) Escherichia coli APEC O78 14483757 YP_007382956.1 CDS APECO78_18975 NC_020163.1 3936756 3937337 R COG3150 Predicted esterase; esterase YqiA complement(3936756..3937337) Escherichia coli APEC O78 14483758 YP_007382957.1 CDS APECO78_18980 NC_020163.1 3937337 3938164 R COG1409 Predicted phosphohydrolases; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3937337..3938164) Escherichia coli APEC O78 14483759 YP_007382958.1 CDS APECO78_18985 NC_020163.1 3938189 3938611 R COG3151 Uncharacterized protein conserved in bacteria; dehydrogenase complement(3938189..3938611) Escherichia coli APEC O78 14483760 YP_007382959.1 CDS APECO78_18990 NC_020163.1 3938612 3939241 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; ADP-ribose pyrophosphatase NudF complement(3938612..3939241) Escherichia coli APEC O78 14483761 YP_007382960.1 CDS APECO78_18995 NC_020163.1 3939446 3940927 D COG1538 Outer membrane protein; outer membrane channel protein 3939446..3940927 Escherichia coli APEC O78 14483762 YP_007382961.1 CDS APECO78_19000 NC_020163.1 3941075 3941746 D COG5463 Predicted integral membrane protein; hypothetical protein 3941075..3941746 Escherichia coli APEC O78 14483763 YP_007382962.1 CDS APECO78_19005 NC_020163.1 3941752 3942912 D COG0754 Glutathionylspermidine synthase; putative synthetase/amidase 3941752..3942912 Escherichia coli APEC O78 14483764 YP_007382963.1 CDS APECO78_19010 NC_020163.1 3942950 3943738 R COG3384 Uncharacterized conserved protein; hypothetical protein complement(3942950..3943738) Escherichia coli APEC O78 14483765 YP_007382964.1 CDS APECO78_19015 NC_020163.1 3943881 3944654 D COG0428 Predicted divalent heavy-metal cations transporter; zinc transporter ZupT 3943881..3944654 Escherichia coli APEC O78 14483766 YP_007382965.1 CDS APECO78_19020 NC_020163.1 3944712 3944882 R hypothetical protein complement(3944712..3944882) Escherichia coli APEC O78 14483767 YP_007382966.1 CDS APECO78_19025 NC_020163.1 3945143 3945796 R COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3945143..3945796) Escherichia coli APEC O78 14483768 YP_007382967.1 CDS APECO78_19030 NC_020163.1 3946170 3946460 D COG2960 Uncharacterized protein conserved in bacteria; hypothetical protein 3946170..3946460 Escherichia coli APEC O78 14483769 YP_007382968.1 CDS APECO78_19035 NC_020163.1 3946743 3947294 D COG3539 P pilus assembly protein, pilin FimA; fimbrial protein 3946743..3947294 Escherichia coli APEC O78 14483770 YP_007382969.1 CDS APECO78_19040 NC_020163.1 3947354 3949858 D COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein 3947354..3949858 Escherichia coli APEC O78 14483771 YP_007382970.1 CDS APECO78_19045 NC_020163.1 3949874 3950623 D COG3121 P pilus assembly protein, chaperone PapD; putative fimbrial chaperone 3949874..3950623 Escherichia coli APEC O78 14483772 YP_007382971.1 CDS APECO78_19050 NC_020163.1 3950625 3951689 D hypothetical protein 3950625..3951689 Escherichia coli APEC O78 14483773 YP_007382972.1 CDS APECO78_19055 NC_020163.1 3951732 3951932 R glycogen synthesis protein GlgS complement(3951732..3951932) Escherichia coli APEC O78 14483774 YP_007382973.1 CDS APECO78_19060 NC_020163.1 3952201 3952830 D inner membrane protein 3952201..3952830 Escherichia coli APEC O78 14483775 YP_007382974.1 CDS APECO78_19065 NC_020163.1 3952857 3954518 D COG2268 Uncharacterized protein conserved in bacteria; hypothetical protein 3952857..3954518 Escherichia coli APEC O78 14483776 YP_007382975.1 CDS APECO78_19070 NC_020163.1 3955312 3956745 R COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3955312..3956745) Escherichia coli APEC O78 14483777 YP_007382976.1 CDS APECO78_19075 NC_020163.1 3956793 3959633 R COG1391 Glutamine synthetase adenylyltransferase; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3956793..3959633) Escherichia coli APEC O78 14483778 YP_007382977.1 CDS APECO78_19080 NC_020163.1 3959656 3960957 R COG3025 Uncharacterized conserved protein; putative adenylate cyclase complement(3959656..3960957) Escherichia coli APEC O78 14483779 YP_007382978.1 CDS APECO78_19085 NC_020163.1 3961199 3961819 D COG3103 SH3 domain protein; putative signal transduction protein 3961199..3961819 Escherichia coli APEC O78 14483780 YP_007382979.1 CDS APECO78_19090 NC_020163.1 3961883 3963121 D COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; multifunctional CCA protein 3961883..3963121 Escherichia coli APEC O78 14483781 YP_007382980.1 CDS APECO78_19095 NC_020163.1 3963302 3964123 R COG1968 Uncharacterized bacitracin resistance protein; undecaprenyl pyrophosphate phosphatase complement(3963302..3964123) Escherichia coli APEC O78 14483782 YP_007382981.1 CDS folB NC_020163.1 3964213 3964581 R COG1539 Dihydroneopterin aldolase; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3964213..3964581) Escherichia coli APEC O78 14483783 YP_007382982.1 CDS APECO78_19105 NC_020163.1 3964686 3965303 D COG0344 Predicted membrane protein; glycerol-3-phosphate acyltransferase PlsY 3964686..3965303 Escherichia coli APEC O78 14483784 YP_007382983.1 CDS APECO78_19110 NC_020163.1 3965316 3966248 R COG0583 Transcriptional regulator; transcriptional activator TtdR complement(3965316..3966248) Escherichia coli APEC O78 14483785 YP_007382984.1 CDS APECO78_19115 NC_020163.1 3966455 3967366 D COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; tartrate dehydratase subunit alpha 3966455..3967366 Escherichia coli APEC O78 14483786 YP_007382985.1 CDS APECO78_19120 NC_020163.1 3967363 3967968 D COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; L-tartrate dehydratase beta subunit 3967363..3967968 Escherichia coli APEC O78 14483787 YP_007382986.1 CDS APECO78_19125 NC_020163.1 3968016 3969479 D COG0471 Di- and tricarboxylate transporters; L-tartrate/succinate antiporter 3968016..3969479 Escherichia coli APEC O78 14483788 YP_007382987.1 CDS APECO78_19130 NC_020163.1 3969522 3970535 R COG0533 Metal-dependent proteases with possible chaperone activity; O-sialoglycoprotein endopeptidase complement(3969522..3970535) Escherichia coli APEC O78 14483789 YP_007382988.1 CDS APECO78_19135 NC_020163.1 3970773 3970988 D COG0828 Ribosomal protein S21; 30S ribosomal protein S21 3970773..3970988 Escherichia coli APEC O78 14483790 YP_007382989.1 CDS APECO78_19140 NC_020163.1 3971099 3972844 D COG0358 DNA primase (bacterial type); DNA primase 3971099..3972844 Escherichia coli APEC O78 14483791 YP_007382990.1 CDS APECO78_19145 NC_020163.1 3973039 3974880 D COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma-70 factor 3973039..3974880 Escherichia coli APEC O78 14483792 YP_007382991.1 CDS APECO78_19150 NC_020163.1 3974959 3975465 R COG3663 G:T/U mismatch-specific DNA glycosylase; G/U mismatch-specific DNA glycosylase complement(3974959..3975465) Escherichia coli APEC O78 14483793 YP_007382992.1 CDS APECO78_19155 NC_020163.1 3975719 3976483 R COG2375 Siderophore-interacting protein; siderophore-interacting protein complement(3975719..3976483) Escherichia coli APEC O78 14484650 YP_007382993.1 CDS APECO78_19160 NC_020163.1 3976771 3977394 D COG1695 Predicted transcriptional regulators; transcriptional regulator 3976771..3977394 Escherichia coli APEC O78 14483795 YP_007382994.1 CDS APECO78_19165 NC_020163.1 3977548 3979068 R COG2202 FOG: PAS/PAC domain; aerotaxis sensor receptor complement(3977548..3979068) Escherichia coli APEC O78 14483796 YP_007382995.1 CDS APECO78_19170 NC_020163.1 3979459 3980865 D COG4992 Ornithine/acetylornithine aminotransferase; putrescine--2-oxoglutarate aminotransferase 3979459..3980865 Escherichia coli APEC O78 14483797 YP_007382996.1 CDS APECO78_19175 NC_020163.1 3980907 3981239 R COG0073 EMAP domain; tRNA-binding protein complement(3980907..3981239) Escherichia coli APEC O78 14483798 YP_007382997.1 CDS APECO78_19180 NC_020163.1 3981458 3982441 D COG1609 Transcriptional regulators; DNA-binding transcriptional repressor EbgR 3981458..3982441 Escherichia coli APEC O78 14483799 YP_007382998.1 CDS ebgA NC_020163.1 3982625 3985717 D COG3250 Beta-galactosidase/beta-glucuronidase; cryptic beta-D-galactosidase subunit alpha 3982625..3985717 Escherichia coli APEC O78 14483800 YP_007382999.1 CDS APECO78_19190 NC_020163.1 3985714 3986163 D COG2731 Beta-galactosidase, beta subunit; cryptic beta-D-galactosidase subunit beta 3985714..3986163 Escherichia coli APEC O78 14483801 YP_007383000.1 CDS APECO78_19195 NC_020163.1 3986226 3987659 D COG0531 Amino acid transporters; putative oxidoreductase 3986226..3987659 Escherichia coli APEC O78 14483802 YP_007383001.1 CDS APECO78_19200 NC_020163.1 3987793 3988863 D hypothetical protein 3987793..3988863 Escherichia coli APEC O78 14483803 YP_007383002.1 CDS APECO78_19205 NC_020163.1 3988880 3991231 D COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; alpha-glucosidase 3988880..3991231 Escherichia coli APEC O78 14483804 YP_007383003.1 CDS fadH NC_020163.1 3991557 3993575 D COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; 2,4-dienoyl-CoA reductase 3991557..3993575 Escherichia coli APEC O78 14483805 YP_007383004.1 CDS APECO78_19215 NC_020163.1 3993620 3994036 R COG5499 Predicted transcription regulator containing HTH domain; DNA-binding transcriptional regulator complement(3993620..3994036) Escherichia coli APEC O78 14483806 YP_007383005.1 CDS APECO78_19220 NC_020163.1 3994033 3994203 R hypothetical protein complement(3994033..3994203) Escherichia coli APEC O78 14483807 YP_007383006.1 CDS APECO78_19225 NC_020163.1 3994307 3995443 R COG2813 16S RNA G1207 methylase RsmC; SAM-dependent 23S ribosomal RNA mG1835 methyltransferase complement(3994307..3995443) Escherichia coli APEC O78 14483808 YP_007383007.1 CDS APECO78_19230 NC_020163.1 3995528 3996031 D COG1451 Predicted metal-dependent hydrolase; hypothetical protein 3995528..3996031 Escherichia coli APEC O78 14483809 YP_007383008.1 CDS APECO78_19235 NC_020163.1 3996108 3996791 D COG2949 Uncharacterized membrane protein; putative thioredoxin-like protein 3996108..3996791 Escherichia coli APEC O78 14483810 YP_007383009.1 CDS APECO78_19240 NC_020163.1 3996870 3997856 D COG0673 Predicted dehydrogenases and related proteins; NAD(P)-binding dehydrogenase 3996870..3997856 Escherichia coli APEC O78 14483811 YP_007383010.1 CDS APECO78_19245 NC_020163.1 3998139 3999104 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; inner membrane protein 3998139..3999104 Escherichia coli APEC O78 14483812 YP_007383011.1 CDS APECO78_19250 NC_020163.1 3999505 4000749 D COG3633 Na+/serine symporter; serine/threonine transporter SstT 3999505..4000749 Escherichia coli APEC O78 14483813 YP_007383012.1 CDS APECO78_19255 NC_020163.1 4000754 4001305 R inner membrane protein complement(4000754..4001305) Escherichia coli APEC O78 14483814 YP_007383013.1 CDS APECO78_19260 NC_020163.1 4001388 4002875 R COG2721 Altronate dehydratase; altronate hydrolase complement(4001388..4002875) Escherichia coli APEC O78 14483815 YP_007383014.1 CDS APECO78_19265 NC_020163.1 4002890 4004302 R COG1904 Glucuronate isomerase; glucuronate isomerase complement(4002890..4004302) Escherichia coli APEC O78 14483816 YP_007383015.1 CDS APECO78_19270 NC_020163.1 4004785 4006083 D COG0477 Permeases of the major facilitator superfamily; hexuronate transporter ExuT 4004785..4006083 Escherichia coli APEC O78 14483817 YP_007383016.1 CDS APECO78_19275 NC_020163.1 4006171 4007259 R putative minor pilin and initiator protein complement(4006171..4007259) Escherichia coli APEC O78 14483818 YP_007383017.1 CDS APECO78_19280 NC_020163.1 4007256 4008182 R Outer membrane fimbrial user protein complement(4007256..4008182) Escherichia coli APEC O78 14483819 YP_007383018.1 CDS APECO78_19285 NC_020163.1 4008157 4009062 R COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB complement(4008157..4009062) Escherichia coli APEC O78 14483820 YP_007383019.1 CDS APECO78_19290 NC_020163.1 4009020 4009385 R COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA complement(4009020..4009385) Escherichia coli APEC O78 14483821 YP_007383020.1 CDS APECO78_19295 NC_020163.1 4009474 4011276 R putative outer membrane usher protein complement(4009474..4011276) Escherichia coli APEC O78 14483822 YP_007383021.1 CDS APECO78_19300 NC_020163.1 4011368 4011868 R fimbrial subunit complement(4011368..4011868) Escherichia coli APEC O78 14483823 YP_007383022.1 CDS APECO78_19305 NC_020163.1 4011898 4012614 R fimbrial protein complement(4011898..4012614) Escherichia coli APEC O78 14483824 YP_007383023.1 CDS APECO78_19310 NC_020163.1 4012910 4013686 D COG2186 Transcriptional regulators; DNA-binding transcriptional repressor ExuR 4012910..4013686 Escherichia coli APEC O78 14483825 YP_007383024.1 CDS APECO78_19315 NC_020163.1 4014031 4014693 D COG0586 Uncharacterized membrane-associated protein; hypothetical protein 4014031..4014693 Escherichia coli APEC O78 14483826 YP_007383025.1 CDS APECO78_19320 NC_020163.1 4014697 4015080 D EnvZ/OmpR regulon moderator 4014697..4015080 Escherichia coli APEC O78 14483827 YP_007383026.1 CDS APECO78_19325 NC_020163.1 4015227 4015595 D hypothetical protein 4015227..4015595 Escherichia coli APEC O78 14483828 YP_007383027.1 CDS APECO78_19330 NC_020163.1 4015633 4015938 D COG4575 Uncharacterized conserved protein; hypothetical protein 4015633..4015938 Escherichia coli APEC O78 14483829 YP_007383028.1 CDS APECO78_19335 NC_020163.1 4015941 4016345 D hypothetical protein 4015941..4016345 Escherichia coli APEC O78 14483830 YP_007383029.1 CDS APECO78_19340 NC_020163.1 4016335 4016634 D hypothetical protein 4016335..4016634 Escherichia coli APEC O78 14483831 YP_007383030.1 CDS APECO78_19345 NC_020163.1 4016820 4017212 D COG2259 Predicted membrane protein; hypothetical protein 4016820..4017212 Escherichia coli APEC O78 14483832 YP_007383031.1 CDS APECO78_19350 NC_020163.1 4017282 4018268 D COG0435 Predicted glutathione S-transferase; S-transferase 4017282..4018268 Escherichia coli APEC O78 14483833 YP_007383032.1 CDS APECO78_19355 NC_020163.1 4018561 4018926 D COG3152 Predicted membrane protein; hypothetical protein 4018561..4018926 Escherichia coli APEC O78 14483834 YP_007383033.1 CDS APECO78_19360 NC_020163.1 4019168 4019524 D COG3152 Predicted membrane protein; putative inner membrane protein 4019168..4019524 Escherichia coli APEC O78 14483835 YP_007383034.1 CDS APECO78_19365 NC_020163.1 4019575 4020471 R COG0583 Transcriptional regulator; LysR family transcriptional regulator complement(4019575..4020471) Escherichia coli APEC O78 14483836 YP_007383035.1 CDS APECO78_19370 NC_020163.1 4020576 4021277 D COG1741 Pirin-related protein; pirin 4020576..4021277 Escherichia coli APEC O78 14483837 YP_007383036.1 CDS APECO78_19375 NC_020163.1 4021300 4021464 D hypothetical protein 4021300..4021464 Escherichia coli APEC O78 14483838 YP_007383037.1 CDS APECO78_19380 NC_020163.1 4021454 4021615 R hypothetical protein complement(4021454..4021615) Escherichia coli APEC O78 14483839 YP_007383038.1 CDS APECO78_19385 NC_020163.1 4021676 4022986 R COG3681 Uncharacterized conserved protein; hypothetical protein complement(4021676..4022986) Escherichia coli APEC O78 14483840 YP_007383039.1 CDS APECO78_19390 NC_020163.1 4023014 4024345 R COG0814 Amino acid permeases; transporter complement(4023014..4024345) Escherichia coli APEC O78 14483841 YP_007383040.1 CDS APECO78_19395 NC_020163.1 4024620 4025984 R COG1760 L-serine deaminase; L-serine dehydratase TdcG complement(4024620..4025984) Escherichia coli APEC O78 14483842 YP_007383041.1 CDS APECO78_19400 NC_020163.1 4026056 4026445 R COG0251 Putative translation initiation inhibitor, yjgF family; endoribonuclease L-PSP complement(4026056..4026445) Escherichia coli APEC O78 14483843 YP_007383042.1 CDS APECO78_19405 NC_020163.1 4026459 4028753 R COG1882 Pyruvate-formate lyase; Keto-acid formate acetyltransferase complement(4026459..4028753) Escherichia coli APEC O78 14483844 YP_007383043.1 CDS APECO78_19410 NC_020163.1 4028787 4029995 R COG0282 Acetate kinase; propionate/acetate kinase complement(4028787..4029995) Escherichia coli APEC O78 14483845 YP_007383044.1 CDS APECO78_19415 NC_020163.1 4030021 4031352 R COG0814 Amino acid permeases; threonine/serine transporter TdcC complement(4030021..4031352) Escherichia coli APEC O78 14483846 YP_007383045.1 CDS APECO78_19420 NC_020163.1 4031374 4032363 R COG1171 Threonine dehydratase; threonine dehydratase complement(4031374..4032363) Escherichia coli APEC O78 14483847 YP_007383046.1 CDS APECO78_19425 NC_020163.1 4032462 4033400 R COG0583 Transcriptional regulator; DNA-binding transcriptional activator TdcA complement(4032462..4033400) Escherichia coli APEC O78 14483848 YP_007383047.1 CDS APECO78_19430 NC_020163.1 4033577 4033933 D DNA-binding transcriptional activator TdcR 4033577..4033933 Escherichia coli APEC O78 14483849 YP_007383048.1 CDS APECO78_19435 NC_020163.1 4034189 4034728 D COG0443 Molecular chaperone; hypothetical protein 4034189..4034728 Escherichia coli APEC O78 14483850 YP_007383049.1 CDS APECO78_19440 NC_020163.1 4034750 4035937 D hypothetical protein 4034750..4035937 Escherichia coli APEC O78 14483851 YP_007383050.1 CDS APECO78_19445 NC_020163.1 4036139 4036267 R hypothetical protein complement(4036139..4036267) Escherichia coli APEC O78 14483852 YP_007383051.1 CDS APECO78_19450 NC_020163.1 4036264 4036380 R hypothetical protein complement(4036264..4036380) Escherichia coli APEC O78 14483853 YP_007383052.1 CDS APECO78_19455 NC_020163.1 4036847 4037992 R COG1929 Glycerate kinase; glycerate kinase I complement(4036847..4037992) Escherichia coli APEC O78 14483854 YP_007383053.1 CDS APECO78_19460 NC_020163.1 4038089 4038979 R COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase complement(4038089..4038979) Escherichia coli APEC O78 14483855 YP_007383054.1 CDS APECO78_19465 NC_020163.1 4039009 4039779 R COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(4039009..4039779) Escherichia coli APEC O78 14483856 YP_007383055.1 CDS APECO78_19470 NC_020163.1 4039795 4041129 R COG0477 Permeases of the major facilitator superfamily; putative transport protein complement(4039795..4041129) Escherichia coli APEC O78 14483857 YP_007383056.1 CDS APECO78_19475 NC_020163.1 4041504 4043075 D COG2721 Altronate dehydratase; galactarate dehydratase 4041504..4043075 Escherichia coli APEC O78 14483858 YP_007383057.1 CDS APECO78_19480 NC_020163.1 4043224 4043559 D COG2002 Regulators of stationary/sporulation gene expression; regulator PrlF 4043224..4043559 Escherichia coli APEC O78 14483859 YP_007383058.1 CDS APECO78_19485 NC_020163.1 4043559 4044023 D hypothetical protein 4043559..4044023 Escherichia coli APEC O78 14483860 YP_007383059.1 CDS APECO78_19490 NC_020163.1 4044078 4044887 R COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional regulator AgaR complement(4044078..4044887) Escherichia coli APEC O78 14483861 YP_007383060.1 CDS APECO78_19495 NC_020163.1 4045136 4046416 D COG4573 Predicted tagatose 6-phosphate kinase; tagatose 6-phosphate aldolase 1, kbaZ subunit 4045136..4046416 Escherichia coli APEC O78 14483862 YP_007383061.1 CDS APECO78_19500 NC_020163.1 4046439 4046912 D COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; N-acetylgalactosamine-specific PTS system 4046439..4046912 Escherichia coli APEC O78 14483863 YP_007383062.1 CDS APECO78_19505 NC_020163.1 4046923 4047702 D COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system N-acetylgalactosamine-specific transporter subunit IIC 4046923..4047702 Escherichia coli APEC O78 14483864 YP_007383063.1 CDS APECO78_19510 NC_020163.1 4047692 4048570 D COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system N-acetylgalactosamine-specific transporter subunit IID 4047692..4048570 Escherichia coli APEC O78 14483865 YP_007383064.1 CDS APECO78_19515 NC_020163.1 4048588 4049022 D COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system transporter subunit IIA 4048588..4049022 Escherichia coli APEC O78 14483866 YP_007383065.1 CDS APECO78_19520 NC_020163.1 4049019 4050152 D COG1820 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 4049019..4050152 Escherichia coli APEC O78 14483867 YP_007383066.1 CDS agaS NC_020163.1 4050503 4051657 D COG2222 Predicted phosphosugar isomerases; tagatose-6-phosphate ketose/aldose isomerase 4050503..4051657 Escherichia coli APEC O78 14483868 YP_007383067.1 CDS APECO78_19530 NC_020163.1 4051670 4052530 D COG0191 Fructose/tagatose bisphosphate aldolase; tagatose-bisphosphate aldolase 4051670..4052530 Escherichia coli APEC O78 14483869 YP_007383068.1 CDS APECO78_19535 NC_020163.1 4052697 4053173 D COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system N-acetylgalactosamine-specific transporter subunit IIB 4052697..4053173 Escherichia coli APEC O78 14483870 YP_007383069.1 CDS APECO78_19540 NC_020163.1 4053212 4054015 D COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system N-acetylgalactosamine-specific transporter subunit IIC 4053212..4054015 Escherichia coli APEC O78 14483871 YP_007383070.1 CDS APECO78_19545 NC_020163.1 4054005 4054796 D COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; N-acetylgalactosamine-specific PTS system 4054005..4054796 Escherichia coli APEC O78 14483872 YP_007383071.1 CDS APECO78_19550 NC_020163.1 4054797 4055552 D COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; galactosamine-6-phosphate isomerase 4054797..4055552 Escherichia coli APEC O78 14483873 YP_007383072.1 CDS APECO78_19555 NC_020163.1 4055953 4056537 D COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like protein 4055953..4056537 Escherichia coli APEC O78 14483874 YP_007383073.1 CDS APECO78_19560 NC_020163.1 4056617 4057312 D COG3121 P pilus assembly protein, chaperone PapD; periplasmic pilin chaperone 4056617..4057312 Escherichia coli APEC O78 14483875 YP_007383074.1 CDS APECO78_19565 NC_020163.1 4057342 4059858 D COG3188 P pilus assembly protein, porin PapC; Fimbrial usher family protein 4057342..4059858 Escherichia coli APEC O78 14483876 YP_007383075.1 CDS APECO78_19570 NC_020163.1 4059869 4060960 D COG3539 P pilus assembly protein, pilin FimA; fimbrial protein 4059869..4060960 Escherichia coli APEC O78 14483877 YP_007383076.1 CDS APECO78_19575 NC_020163.1 4061003 4061863 R COG0313 Predicted methyltransferases; SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase complement(4061003..4061863) Escherichia coli APEC O78 14483878 YP_007383077.1 CDS APECO78_19580 NC_020163.1 4061928 4063964 D COG3107 Putative lipoprotein; LppC family lipoprotein 4061928..4063964 Escherichia coli APEC O78 14483879 YP_007383078.1 CDS APECO78_19585 NC_020163.1 4063922 4064317 D COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 4063922..4064317 Escherichia coli APEC O78 14483880 YP_007383079.1 CDS APECO78_19590 NC_020163.1 4064337 4064927 D COG0279 Phosphoheptose isomerase; DnaA initiator-associating protein DiaA 4064337..4064927 Escherichia coli APEC O78 14483881 YP_007383080.1 CDS APECO78_19595 NC_020163.1 4064937 4065512 D COG2823 Predicted periplasmic or secreted lipoprotein; outer membrane lipoprotein 4064937..4065512 Escherichia coli APEC O78 14483882 YP_007383081.1 CDS APECO78_19600 NC_020163.1 4065717 4066757 R COG0701 Predicted permeases; putative permease complement(4065717..4066757) Escherichia coli APEC O78 14483883 YP_007383082.1 CDS APECO78_19605 NC_020163.1 4066830 4067465 R COG0702 Predicted nucleoside-diphosphate-sugar epimerases; nucleoside-diphosphate-sugar epimerase complement(4066830..4067465) Escherichia coli APEC O78 14483884 YP_007383083.1 CDS APECO78_19610 NC_020163.1 4067593 4068111 D COG0693 Putative intracellular protease/amidase; hypothetical protein 4067593..4068111 Escherichia coli APEC O78 14483885 YP_007383084.1 CDS APECO78_19615 NC_020163.1 4068091 4068534 R COG3787 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4068091..4068534) Escherichia coli APEC O78 14483886 YP_007383085.1 CDS APECO78_19620 NC_020163.1 4068585 4068887 D COG2827 Predicted endonuclease containing a URI domain; endonuclease 4068585..4068887 Escherichia coli APEC O78 14483887 YP_007383086.1 CDS APECO78_19625 NC_020163.1 4068874 4069377 R COG3153 Predicted acetyltransferase; hypothetical protein complement(4068874..4069377) Escherichia coli APEC O78 14483888 YP_007383087.1 CDS APECO78_19630 NC_020163.1 4069371 4069895 R COG3154 Putative lipid carrier protein; hypothetical protein complement(4069371..4069895) Escherichia coli APEC O78 14483889 YP_007383088.1 CDS APECO78_19635 NC_020163.1 4070104 4071099 D COG0826 Collagenase and related proteases; peptidase, U32 family protein 4070104..4071099 Escherichia coli APEC O78 14483890 YP_007383089.1 CDS APECO78_19640 NC_020163.1 4071108 4071986 D COG0826 Collagenase and related proteases; hypothetical protein 4071108..4071986 Escherichia coli APEC O78 14483891 YP_007383090.1 CDS APECO78_19645 NC_020163.1 4072192 4073199 D COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; hypothetical protein 4072192..4073199 Escherichia coli APEC O78 14483892 YP_007383091.1 CDS APECO78_19650 NC_020163.1 4073317 4074561 R COG0814 Amino acid permeases; tryptophan permease complement(4073317..4074561) Escherichia coli APEC O78 14483893 YP_007383092.1 CDS APECO78_19655 NC_020163.1 4074715 4076604 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DeaD complement(4074715..4076604) Escherichia coli APEC O78 14483894 YP_007383093.1 CDS APECO78_19660 NC_020163.1 4076784 4077668 R COG4785 Lipoprotein NlpI, contains TPR repeats; lipoprotein NlpI complement(4076784..4077668) Escherichia coli APEC O78 14483895 YP_007383094.1 CDS APECO78_19665 NC_020163.1 4077777 4079912 R COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase complement(4077777..4079912) Escherichia coli APEC O78 14483896 YP_007383095.1 CDS APECO78_19670 NC_020163.1 4080159 4080428 R COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 complement(4080159..4080428) Escherichia coli APEC O78 14483897 YP_007383096.1 CDS APECO78_19675 NC_020163.1 4080577 4081521 R COG0130 Pseudouridine synthase; tRNA pseudouridine synthase B complement(4080577..4081521) Escherichia coli APEC O78 14483898 YP_007383097.1 CDS APECO78_19680 NC_020163.1 4081521 4081922 R COG0858 Ribosome-binding factor A; ribosome-binding factor A complement(4081521..4081922) Escherichia coli APEC O78 14483899 YP_007383098.1 CDS APECO78_19685 NC_020163.1 4082086 4084758 R COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 complement(4082086..4084758) Escherichia coli APEC O78 14483900 YP_007383099.1 CDS APECO78_19690 NC_020163.1 4084783 4086270 R COG0195 Transcription elongation factor; transcription elongation factor NusA complement(4084783..4086270) Escherichia coli APEC O78 14483901 YP_007383100.1 CDS APECO78_19695 NC_020163.1 4086298 4086750 R COG0779 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4086298..4086750) Escherichia coli APEC O78 14483902 YP_007383101.1 CDS APECO78_19700 NC_020163.1 4087381 4088724 D COG0137 Argininosuccinate synthase; argininosuccinate synthase 4087381..4088724 Escherichia coli APEC O78 14484651 YP_007383102.1 CDS APECO78_19705 NC_020163.1 4088732 4090357 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; hydrolase, inner membrane complement(4088732..4090357) Escherichia coli APEC O78 14483904 YP_007383103.1 CDS APECO78_19710 NC_020163.1 4090917 4091249 R COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(4090917..4091249) Escherichia coli APEC O78 14484652 YP_007383104.1 CDS APECO78_19715 NC_020163.1 4091420 4091563 D hypothetical protein 4091420..4091563 Escherichia coli APEC O78 14483906 YP_007383105.1 CDS APECO78_19720 NC_020163.1 4091477 4092814 R COG1109 Phosphomannomutase; phosphoglucosamine mutase complement(4091477..4092814) Escherichia coli APEC O78 14483907 YP_007383106.1 CDS APECO78_19725 NC_020163.1 4092807 4093655 R COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase complement(4092807..4093655) Escherichia coli APEC O78 14483908 YP_007383107.1 CDS hflB NC_020163.1 4093745 4095679 R COG0465 ATP-dependent Zn proteases; ATP-dependent metalloprotease complement(4093745..4095679) Escherichia coli APEC O78 14483909 YP_007383108.1 CDS APECO78_19735 NC_020163.1 4095779 4096408 R COG0293 23S rRNA methylase; 23S rRNA methyltransferase J complement(4095779..4096408) Escherichia coli APEC O78 14483910 YP_007383109.1 CDS APECO78_19740 NC_020163.1 4096534 4096827 D COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; RNA-binding protein YhbY 4096534..4096827 Escherichia coli APEC O78 14483911 YP_007383110.1 CDS APECO78_19745 NC_020163.1 4096983 4097459 R COG0782 Transcription elongation factor; transcription elongation factor GreA complement(4096983..4097459) Escherichia coli APEC O78 14483912 YP_007383111.1 CDS APECO78_19750 NC_020163.1 4097707 4099140 D COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); D-alanyl-D-alanine carboxypeptidase 4097707..4099140 Escherichia coli APEC O78 14483913 YP_007383112.1 CDS APECO78_19755 NC_020163.1 4099326 4100498 R COG0536 Predicted GTPase; GTPase CgtA complement(4099326..4100498) Escherichia coli APEC O78 14483914 YP_007383113.1 CDS APECO78_19760 NC_020163.1 4100514 4101479 R COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein complement(4100514..4101479) Escherichia coli APEC O78 14483915 YP_007383114.1 CDS APECO78_19765 NC_020163.1 4101606 4101863 R COG0211 Ribosomal protein L27; 50S ribosomal protein L27 complement(4101606..4101863) Escherichia coli APEC O78 14483916 YP_007383115.1 CDS APECO78_19770 NC_020163.1 4101884 4102195 R COG0261 Ribosomal protein L21; 50S ribosomal protein L21 complement(4101884..4102195) Escherichia coli APEC O78 14483917 YP_007383116.1 CDS APECO78_19775 NC_020163.1 4102454 4103425 D COG0142 Geranylgeranyl pyrophosphate synthase; octaprenyl diphosphate synthase 4102454..4103425 Escherichia coli APEC O78 14483918 YP_007383117.1 CDS APECO78_19780 NC_020163.1 4103652 4103930 D COG3423 Predicted transcriptional regulator; DNA-binding transcriptional regulator Nlp 4103652..4103930 Escherichia coli APEC O78 14483919 YP_007383118.1 CDS APECO78_19785 NC_020163.1 4103978 4105237 R COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(4103978..4105237) Escherichia coli APEC O78 14483920 YP_007383119.1 CDS APECO78_19790 NC_020163.1 4105292 4105546 R COG5007 Predicted transcriptional regulator, BolA superfamily; DNA-binding transcriptional regulator complement(4105292..4105546) Escherichia coli APEC O78 14483921 YP_007383120.1 CDS APECO78_19795 NC_020163.1 4105706 4105999 R COG3113 Predicted NTP binding protein (contains STAS domain); putative NTP binding protein (contains STAS domain) complement(4105706..4105999) Escherichia coli APEC O78 14483922 YP_007383121.1 CDS APECO78_19800 NC_020163.1 4105999 4106634 R COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component; ABC transporter substrate-binding protein MlaC complement(4105999..4106634) Escherichia coli APEC O78 14483923 YP_007383122.1 CDS APECO78_19805 NC_020163.1 4106653 4107204 R COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; hypothetical protein complement(4106653..4107204) Escherichia coli APEC O78 14483924 YP_007383123.1 CDS APECO78_19810 NC_020163.1 4107209 4107991 R COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; toluene ABC transporter permease complement(4107209..4107991) Escherichia coli APEC O78 14483925 YP_007383124.1 CDS APECO78_19815 NC_020163.1 4107999 4108808 R COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ABC transporter ATP-binding protein complement(4107999..4108808) Escherichia coli APEC O78 14483926 YP_007383125.1 CDS APECO78_19820 NC_020163.1 4109018 4109995 D COG0530 Ca2+/Na+ antiporter; calcium/sodium:proton antiporter 4109018..4109995 Escherichia coli APEC O78 14483927 YP_007383126.1 CDS APECO78_19825 NC_020163.1 4110009 4110995 D COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 4110009..4110995 Escherichia coli APEC O78 14483928 YP_007383127.1 CDS APECO78_19830 NC_020163.1 4111016 4111582 D COG1778 Low specificity phosphatase (HAD superfamily); 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4111016..4111582 Escherichia coli APEC O78 14483929 YP_007383128.1 CDS APECO78_19835 NC_020163.1 4111579 4112154 D COG3117 Uncharacterized protein conserved in bacteria; lipopolysaccharide exporter periplasmic protein 4111579..4112154 Escherichia coli APEC O78 14483930 YP_007383129.1 CDS APECO78_19840 NC_020163.1 4112123 4112680 D COG1934 Uncharacterized protein conserved in bacteria; lipopolysaccharide transport periplasmic protein LptA 4112123..4112680 Escherichia coli APEC O78 14483931 YP_007383130.1 CDS APECO78_19845 NC_020163.1 4112687 4113412 D COG1137 ABC-type (unclassified) transport system, ATPase component; lipopolysaccharide ABC transporter ATP-binding protein 4112687..4113412 Escherichia coli APEC O78 14483932 YP_007383131.1 CDS APECO78_19850 NC_020163.1 4113460 4114893 D COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 4113460..4114893 Escherichia coli APEC O78 14483933 YP_007383132.1 CDS APECO78_19855 NC_020163.1 4114916 4115203 D COG1544 Ribosome-associated protein Y (PSrp-1); ribosome hibernation promoting factor HPF 4114916..4115203 Escherichia coli APEC O78 14483934 YP_007383133.1 CDS APECO78_19860 NC_020163.1 4115321 4115812 D COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system sugar transporter subunit IIA 4115321..4115812 Escherichia coli APEC O78 14483935 YP_007383134.1 CDS APECO78_19865 NC_020163.1 4115858 4116712 D COG1660 Predicted P-loop-containing kinase; glmZ(sRNA)-inactivating NTPase 4115858..4116712 Escherichia coli APEC O78 14483936 YP_007383135.1 CDS APECO78_19870 NC_020163.1 4116709 4116981 D COG1925 Phosphotransferase system, HPr-related proteins; PTS system phosphohistidinoprotein-hexose phosphotransferase Npr 4116709..4116981 Escherichia coli APEC O78 14483937 YP_007383136.1 CDS APECO78_19875 NC_020163.1 4117195 4117827 D hypothetical protein 4117195..4117827 Escherichia coli APEC O78 14483938 YP_007383137.1 CDS APECO78_19880 NC_020163.1 4117824 4118552 R COG0744 Membrane carboxypeptidase (penicillin-binding protein); monofunctional biosynthetic peptidoglycan transglycosylase complement(4117824..4118552) Escherichia coli APEC O78 14483939 YP_007383138.1 CDS APECO78_19885 NC_020163.1 4118549 4119202 R COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis; isoprenoid biosynthesis protein complement(4118549..4119202) Escherichia coli APEC O78 14483940 YP_007383139.1 CDS APECO78_19890 NC_020163.1 4119432 4121768 R COG0642 Signal transduction histidine kinase; aerobic respiration control sensor protein ArcB complement(4119432..4121768) Escherichia coli APEC O78 14483941 YP_007383140.1 CDS APECO78_19895 NC_020163.1 4121864 4122793 R COG1242 Predicted Fe-S oxidoreductase; Fe-S oxidoreductase complement(4121864..4122793) Escherichia coli APEC O78 14483942 YP_007383141.1 CDS APECO78_19900 NC_020163.1 4122839 4122943 R hypothetical protein complement(4122839..4122943) Escherichia coli APEC O78 14483943 YP_007383142.1 CDS gltB NC_020163.1 4123468 4127928 D COG0067 Glutamate synthase domain 1; glutamate synthase subunit alpha 4123468..4127928 Escherichia coli APEC O78 14483944 YP_007383143.1 CDS gltD NC_020163.1 4127941 4129359 D COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; glutamate synthase subunit beta 4127941..4129359 Escherichia coli APEC O78 14483945 YP_007383144.1 CDS APECO78_19915 NC_020163.1 4129543 4130670 D COG4804 Uncharacterized conserved protein; hypothetical protein 4129543..4130670 Escherichia coli APEC O78 14483946 YP_007383145.1 CDS APECO78_19920 NC_020163.1 4130730 4131194 R COG2731 Beta-galactosidase, beta subunit; hypothetical protein complement(4130730..4131194) Escherichia coli APEC O78 14483947 YP_007383146.1 CDS APECO78_19925 NC_020163.1 4131191 4132066 R COG1940 Transcriptional regulator/sugar kinase; N-acetylmannosamine kinase complement(4131191..4132066) Escherichia coli APEC O78 14483948 YP_007383147.1 CDS APECO78_19930 NC_020163.1 4132063 4132752 R COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; N-acetylmannosamine-6-phosphate 2-epimerase complement(4132063..4132752) Escherichia coli APEC O78 14483949 YP_007383148.1 CDS APECO78_19935 NC_020163.1 4132800 4134290 R COG0477 Permeases of the major facilitator superfamily; sialic acid transporter complement(4132800..4134290) Escherichia coli APEC O78 14483950 YP_007383149.1 CDS APECO78_19940 NC_020163.1 4134399 4135292 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; N-acetylneuraminate lyase complement(4134399..4135292) Escherichia coli APEC O78 14483951 YP_007383150.1 CDS APECO78_19945 NC_020163.1 4135414 4136205 R COG2186 Transcriptional regulators; transcriptional regulator NanR complement(4135414..4136205) Escherichia coli APEC O78 14483952 YP_007383151.1 CDS APECO78_19950 NC_020163.1 4136585 4137952 D COG3069 C4-dicarboxylate transporter; cryptic C4-dicarboxylate transporter DcuD 4136585..4137952 Escherichia coli APEC O78 14483953 YP_007383152.1 CDS APECO78_19955 NC_020163.1 4137995 4138492 R COG2969 Stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(4137995..4138492) Escherichia coli APEC O78 14483954 YP_007383153.1 CDS APECO78_19960 NC_020163.1 4138498 4139136 R COG0625 Glutathione S-transferase; stringent starvation protein A complement(4138498..4139136) Escherichia coli APEC O78 14483955 YP_007383154.1 CDS APECO78_19965 NC_020163.1 4139531 4139923 R COG0103 Ribosomal protein S9; 30S ribosomal protein S9 complement(4139531..4139923) Escherichia coli APEC O78 14483956 YP_007383155.1 CDS APECO78_19970 NC_020163.1 4139939 4140367 R COG0102 Ribosomal protein L13; 50S ribosomal protein L13 complement(4139939..4140367) Escherichia coli APEC O78 14483957 YP_007383156.1 CDS APECO78_19975 NC_020163.1 4140586 4141713 R COG1485 Predicted ATPase; hypothetical protein complement(4140586..4141713) Escherichia coli APEC O78 14483958 YP_007383157.1 CDS APECO78_19980 NC_020163.1 4141907 4142305 D COG3105 Uncharacterized protein conserved in bacteria; hypothetical protein 4141907..4142305 Escherichia coli APEC O78 14483959 YP_007383158.1 CDS APECO78_19985 NC_020163.1 4142459 4143826 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 4142459..4143826 Escherichia coli APEC O78 14483960 YP_007383159.1 CDS APECO78_19990 NC_020163.1 4143916 4144983 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 4143916..4144983 Escherichia coli APEC O78 14483961 YP_007383160.1 CDS APECO78_19995 NC_020163.1 4145045 4145983 R COG0039 Malate/lactate dehydrogenases; malate dehydrogenase complement(4145045..4145983) Escherichia coli APEC O78 14483962 YP_007383161.1 CDS APECO78_20000 NC_020163.1 4146418 4146888 D COG1438 Arginine repressor; arginine repressor 4146418..4146888 Escherichia coli APEC O78 14483963 YP_007383162.1 CDS APECO78_20005 NC_020163.1 4147253 4147516 D hypothetical protein 4147253..4147516 Escherichia coli APEC O78 14483964 YP_007383163.1 CDS APECO78_20010 NC_020163.1 4147572 4147844 R COG2732 Barstar, RNAse (barnase) inhibitor; hypothetical protein complement(4147572..4147844) Escherichia coli APEC O78 14483965 YP_007383164.1 CDS APECO78_20015 NC_020163.1 4147936 4149903 R COG1289 Predicted membrane protein; p-hydroxybenzoic acid efflux subunit AaeB complement(4147936..4149903) Escherichia coli APEC O78 14483966 YP_007383165.1 CDS APECO78_20020 NC_020163.1 4149909 4150841 R COG1566 Multidrug resistance efflux pump; p-hydroxybenzoic acid efflux subunit AaeA complement(4149909..4150841) Escherichia coli APEC O78 14483967 YP_007383166.1 CDS APECO78_20025 NC_020163.1 4150849 4151052 R hypothetical protein complement(4150849..4151052) Escherichia coli APEC O78 14483968 YP_007383167.1 CDS APECO78_20030 NC_020163.1 4151235 4152164 D COG0583 Transcriptional regulator; transcriptional regulator 4151235..4152164 Escherichia coli APEC O78 14483969 YP_007383168.1 CDS APECO78_20035 NC_020163.1 4152292 4153737 R COG0312 Predicted Zn-dependent proteases and their inactivated homologs; protease TldD complement(4152292..4153737) Escherichia coli APEC O78 14483970 YP_007383169.1 CDS APECO78_20040 NC_020163.1 4153893 4157693 R COG3164 Predicted membrane protein; hypothetical protein complement(4153893..4157693) Escherichia coli APEC O78 14483971 YP_007383170.1 CDS APECO78_20045 NC_020163.1 4157761 4159230 R COG1530 Ribonucleases G and E; ribonuclease G complement(4157761..4159230) Escherichia coli APEC O78 14483972 YP_007383171.1 CDS APECO78_20050 NC_020163.1 4159220 4159813 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein complement(4159220..4159813) Escherichia coli APEC O78 14483973 YP_007383172.1 CDS APECO78_20055 NC_020163.1 4159822 4160310 R COG2891 Cell shape-determining protein; rod shape-determining protein MreD complement(4159822..4160310) Escherichia coli APEC O78 14483974 YP_007383173.1 CDS APECO78_20060 NC_020163.1 4160294 4160425 R hypothetical protein complement(4160294..4160425) Escherichia coli APEC O78 14483975 YP_007383174.1 CDS APECO78_20065 NC_020163.1 4160310 4161413 R COG1792 Cell shape-determining protein; rod shape-determining protein MreC complement(4160310..4161413) Escherichia coli APEC O78 14483976 YP_007383175.1 CDS APECO78_20070 NC_020163.1 4161479 4162522 R COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB complement(4161479..4162522) Escherichia coli APEC O78 14483977 YP_007383176.1 CDS APECO78_20075 NC_020163.1 4162827 4164767 R COG2199 FOG: GGDEF domain; regulatory protein CsrD complement(4162827..4164767) Escherichia coli APEC O78 14483978 YP_007383177.1 CDS APECO78_20080 NC_020163.1 4164919 4165893 D COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase 4164919..4165893 Escherichia coli APEC O78 14483979 YP_007383178.1 CDS APECO78_20085 NC_020163.1 4166179 4166298 D hypothetical protein 4166179..4166298 Escherichia coli APEC O78 14483980 YP_007383179.1 CDS APECO78_20090 NC_020163.1 4166302 4166466 D COG2717 Predicted membrane protein; hypothetical protein 4166302..4166466 Escherichia coli APEC O78 14483981 YP_007383180.1 CDS APECO78_20095 NC_020163.1 4166871 4167341 D COG0511 Biotin carboxyl carrier protein; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 4166871..4167341 Escherichia coli APEC O78 14483982 YP_007383181.1 CDS APECO78_20100 NC_020163.1 4167352 4168701 D COG0439 Biotin carboxylase; acetyl CoA carboxylase 4167352..4168701 Escherichia coli APEC O78 14483983 YP_007383182.1 CDS APECO78_20105 NC_020163.1 4168810 4169052 D COG3924 Predicted membrane protein; hypothetical protein 4168810..4169052 Escherichia coli APEC O78 14483984 YP_007383183.1 CDS APECO78_20110 NC_020163.1 4169042 4170493 D COG4145 Na+/panthothenate symporter; sodium/panthothenate symporter 4169042..4170493 Escherichia coli APEC O78 14483985 YP_007383184.1 CDS APECO78_20115 NC_020163.1 4170505 4171386 D COG2264 Ribosomal protein L11 methylase; 50S ribosomal protein L11 methyltransferase 4170505..4171386 Escherichia coli APEC O78 14483986 YP_007383185.1 CDS APECO78_20120 NC_020163.1 4171715 4172680 D COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase B 4171715..4172680 Escherichia coli APEC O78 14483987 YP_007383186.1 CDS APECO78_20125 NC_020163.1 4172706 4173002 D COG2901 Factor for inversion stimulation Fis, transcriptional activator; global DNA-binding transcriptional dual regulator Fis 4172706..4173002 Escherichia coli APEC O78 14483988 YP_007383187.1 CDS APECO78_20130 NC_020163.1 4173088 4173972 D COG0863 DNA modification methylase; methyltransferase 4173088..4173972 Escherichia coli APEC O78 14483989 YP_007383188.1 CDS APECO78_20135 NC_020163.1 4174056 4174235 D hypothetical protein 4174056..4174235 Escherichia coli APEC O78 14483990 YP_007383189.1 CDS APECO78_20140 NC_020163.1 4174238 4174900 R COG1309 Transcriptional regulator; DNA-binding transcriptional regulator EnvR complement(4174238..4174900) Escherichia coli APEC O78 14483991 YP_007383190.1 CDS APECO78_20145 NC_020163.1 4175299 4176456 D COG0845 Membrane-fusion protein; hypothetical protein 4175299..4176456 Escherichia coli APEC O78 14483992 YP_007383191.1 CDS APECO78_20150 NC_020163.1 4176468 4179572 D COG0841 Cation/multidrug efflux pump; multidrug efflux system protein AcrF 4176468..4179572 Escherichia coli APEC O78 14483993 YP_007383192.1 CDS APECO78_20155 NC_020163.1 4179825 4180046 D hypothetical protein 4179825..4180046 Escherichia coli APEC O78 14483994 YP_007383193.1 CDS APECO78_20160 NC_020163.1 4180477 4181502 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein 4180477..4181502 Escherichia coli APEC O78 14483995 YP_007383194.1 CDS APECO78_20165 NC_020163.1 4181570 4182751 D COG4597 ABC-type amino acid transport system, permease component; putative amino-acid transporter subunit 4181570..4182751 Escherichia coli APEC O78 14483996 YP_007383195.1 CDS APECO78_20170 NC_020163.1 4182761 4183864 D COG0765 ABC-type amino acid transport system, permease component; transport system permease 4182761..4183864 Escherichia coli APEC O78 14483997 YP_007383196.1 CDS APECO78_20175 NC_020163.1 4183872 4184630 D COG1126 ABC-type polar amino acid transport system, ATPase component; amino acid ABC transporter ATP-binding protein 4183872..4184630 Escherichia coli APEC O78 14483998 YP_007383197.1 CDS APECO78_20180 NC_020163.1 4190490 4190654 R hypothetical protein complement(4190490..4190654) Escherichia coli APEC O78 14484678 YP_007383198.1 CDS APECO78_20185 NC_020163.1 4190683 4191237 D COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; hypothetical protein 4190683..4191237 Escherichia coli APEC O78 14484000 YP_007383199.1 CDS APECO78_20190 NC_020163.1 4191213 4191470 R hypothetical protein complement(4191213..4191470) Escherichia coli APEC O78 14484001 YP_007383200.1 CDS APECO78_20195 NC_020163.1 4191467 4192285 R COG0169 Shikimate 5-dehydrogenase; dehydroshikimate reductase, NAD(P)-binding protein complement(4191467..4192285) Escherichia coli APEC O78 14484002 YP_007383201.1 CDS APECO78_20200 NC_020163.1 4192290 4192862 R COG0009 Putative translation factor (SUA5); tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein complement(4192290..4192862) Escherichia coli APEC O78 14484003 YP_007383202.1 CDS APECO78_20205 NC_020163.1 4192867 4193409 R COG0551 Zn-finger domain associated with topoisomerase type I; DNA topoisomerase complement(4192867..4193409) Escherichia coli APEC O78 14484004 YP_007383203.1 CDS APECO78_20210 NC_020163.1 4193438 4193911 R COG2922 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4193438..4193911) Escherichia coli APEC O78 14484005 YP_007383204.1 CDS APECO78_20215 NC_020163.1 4193883 4195007 R COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; DNA protecting protein DprA complement(4193883..4195007) Escherichia coli APEC O78 14484006 YP_007383205.1 CDS APECO78_20220 NC_020163.1 4195137 4195646 D COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase 4195137..4195646 Escherichia coli APEC O78 14484007 YP_007383206.1 CDS fmt NC_020163.1 4195661 4196608 D COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 4195661..4196608 Escherichia coli APEC O78 14484008 YP_007383207.1 CDS APECO78_20230 NC_020163.1 4196654 4197943 D COG0144 tRNA and rRNA cytosine-C5-methylases; 16S rRNA methyltransferase B 4196654..4197943 Escherichia coli APEC O78 14484009 YP_007383208.1 CDS APECO78_20235 NC_020163.1 4197965 4199341 D COG0569 K+ transport systems, NAD-binding component; potassium transporter peripheral membrane protein 4197965..4199341 Escherichia coli APEC O78 14484010 YP_007383209.1 CDS APECO78_20240 NC_020163.1 4199471 4199881 D COG1970 Large-conductance mechanosensitive channel; large-conductance mechanosensitive channel 4199471..4199881 Escherichia coli APEC O78 14484011 YP_007383210.1 CDS APECO78_20245 NC_020163.1 4199878 4200096 R COG3036 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4199878..4200096) Escherichia coli APEC O78 14484012 YP_007383211.1 CDS APECO78_20250 NC_020163.1 4200152 4200577 R COG0789 Predicted transcriptional regulators; zinc-responsive transcriptional regulator complement(4200152..4200577) Escherichia coli APEC O78 14484013 YP_007383212.1 CDS APECO78_20255 NC_020163.1 4200588 4200956 R hypothetical protein complement(4200588..4200956) Escherichia coli APEC O78 14484014 YP_007383213.1 CDS APECO78_20260 NC_020163.1 4201063 4201446 R COG0203 Ribosomal protein L17; 50S ribosomal protein L17 complement(4201063..4201446) Escherichia coli APEC O78 14484015 YP_007383214.1 CDS APECO78_20265 NC_020163.1 4201487 4202476 R COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha complement(4201487..4202476) Escherichia coli APEC O78 14484016 YP_007383215.1 CDS APECO78_20270 NC_020163.1 4202502 4203122 R COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 complement(4202502..4203122) Escherichia coli APEC O78 14484017 YP_007383216.1 CDS APECO78_20275 NC_020163.1 4203156 4203545 R COG0100 Ribosomal protein S11; 30S ribosomal protein S11 complement(4203156..4203545) Escherichia coli APEC O78 14484018 YP_007383217.1 CDS APECO78_20280 NC_020163.1 4203562 4203918 R COG0099 Ribosomal protein S13; 30S ribosomal protein S13 complement(4203562..4203918) Escherichia coli APEC O78 14484019 YP_007383218.1 CDS APECO78_20285 NC_020163.1 4204065 4204181 R COG0257 Ribosomal protein L36; 50S ribosomal protein L36 complement(4204065..4204181) Escherichia coli APEC O78 14484020 YP_007383219.1 CDS APECO78_20290 NC_020163.1 4204213 4205544 R COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY complement(4204213..4205544) Escherichia coli APEC O78 14484021 YP_007383220.1 CDS APECO78_20295 NC_020163.1 4205552 4205986 R COG0200 Ribosomal protein L15; 50S ribosomal protein L15 complement(4205552..4205986) Escherichia coli APEC O78 14484022 YP_007383221.1 CDS APECO78_20300 NC_020163.1 4205990 4206169 R COG1841 Ribosomal protein L30/L7E; 50S ribosomal protein L30 complement(4205990..4206169) Escherichia coli APEC O78 14484023 YP_007383222.1 CDS rpsE NC_020163.1 4206173 4206676 R COG0098 Ribosomal protein S5; 30S ribosomal protein S5 complement(4206173..4206676) Escherichia coli APEC O78 14484024 YP_007383223.1 CDS APECO78_20310 NC_020163.1 4206691 4207044 R COG0256 Ribosomal protein L18; 50S ribosomal protein L18 complement(4206691..4207044) Escherichia coli APEC O78 14484025 YP_007383224.1 CDS APECO78_20315 NC_020163.1 4207054 4207587 R COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 complement(4207054..4207587) Escherichia coli APEC O78 14484026 YP_007383225.1 CDS APECO78_20320 NC_020163.1 4207600 4207992 R COG0096 Ribosomal protein S8; 30S ribosomal protein S8 complement(4207600..4207992) Escherichia coli APEC O78 14484027 YP_007383226.1 CDS APECO78_20325 NC_020163.1 4208026 4208331 R COG0199 Ribosomal protein S14; 30S ribosomal protein S14 complement(4208026..4208331) Escherichia coli APEC O78 14484028 YP_007383227.1 CDS APECO78_20330 NC_020163.1 4208346 4208885 R COG0094 Ribosomal protein L5; 50S ribosomal protein L5 complement(4208346..4208885) Escherichia coli APEC O78 14484029 YP_007383228.1 CDS APECO78_20335 NC_020163.1 4208900 4209214 R COG0198 Ribosomal protein L24; 50S ribosomal protein L24 complement(4208900..4209214) Escherichia coli APEC O78 14484030 YP_007383229.1 CDS APECO78_20340 NC_020163.1 4209225 4209596 R COG0093 Ribosomal protein L14; 50S ribosomal protein L14 complement(4209225..4209596) Escherichia coli APEC O78 14484031 YP_007383230.1 CDS APECO78_20345 NC_020163.1 4209761 4210015 R COG0186 Ribosomal protein S17; 30S ribosomal protein S17 complement(4209761..4210015) Escherichia coli APEC O78 14484032 YP_007383231.1 CDS APECO78_20350 NC_020163.1 4210015 4210206 R COG0255 Ribosomal protein L29; 50S ribosomal protein L29 complement(4210015..4210206) Escherichia coli APEC O78 14484033 YP_007383232.1 CDS APECO78_20355 NC_020163.1 4210206 4210616 R COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 complement(4210206..4210616) Escherichia coli APEC O78 14484034 YP_007383233.1 CDS APECO78_20360 NC_020163.1 4210629 4211330 R COG0092 Ribosomal protein S3; 30S ribosomal protein S3 complement(4210629..4211330) Escherichia coli APEC O78 14484035 YP_007383234.1 CDS APECO78_20365 NC_020163.1 4211348 4211680 R COG0091 Ribosomal protein L22; 50S ribosomal protein L22 complement(4211348..4211680) Escherichia coli APEC O78 14484036 YP_007383235.1 CDS APECO78_20370 NC_020163.1 4211695 4211973 R COG0185 Ribosomal protein S19; 30S ribosomal protein S19 complement(4211695..4211973) Escherichia coli APEC O78 14484037 YP_007383236.1 CDS APECO78_20375 NC_020163.1 4211990 4212811 R COG0090 Ribosomal protein L2; 50S ribosomal protein L2 complement(4211990..4212811) Escherichia coli APEC O78 14484038 YP_007383237.1 CDS APECO78_20380 NC_020163.1 4212829 4213131 R COG0089 Ribosomal protein L23; 50S ribosomal protein L23 complement(4212829..4213131) Escherichia coli APEC O78 14484039 YP_007383238.1 CDS APECO78_20385 NC_020163.1 4213128 4213733 R COG0088 Ribosomal protein L4; 50S ribosomal protein L4 complement(4213128..4213733) Escherichia coli APEC O78 14484040 YP_007383239.1 CDS APECO78_20390 NC_020163.1 4213744 4214373 R COG0087 Ribosomal protein L3; 50S ribosomal protein L3 complement(4213744..4214373) Escherichia coli APEC O78 14484041 YP_007383240.1 CDS APECO78_20395 NC_020163.1 4214406 4214717 R COG0051 Ribosomal protein S10; 30S ribosomal protein S10 complement(4214406..4214717) Escherichia coli APEC O78 14484042 YP_007383241.1 CDS APECO78_20400 NC_020163.1 4214955 4215374 R hypothetical protein complement(4214955..4215374) Escherichia coli APEC O78 14484043 YP_007383242.1 CDS APECO78_20405 NC_020163.1 4215376 4216845 R COG3409 Putative peptidoglycan-binding domain-containing protein; general secretory pathway component, cryptic complement(4215376..4216845) Escherichia coli APEC O78 14484044 YP_007383243.1 CDS APECO78_20410 NC_020163.1 4217025 4217840 D COG3031 Type II secretory pathway, component PulC; general secretory pathway component, cryptic 4217025..4217840 Escherichia coli APEC O78 14484045 YP_007383244.1 CDS APECO78_20415 NC_020163.1 4217824 4219776 D COG1450 Type II secretory pathway, component PulD; general secretion pathway protein D 4217824..4219776 Escherichia coli APEC O78 14484046 YP_007383245.1 CDS APECO78_20420 NC_020163.1 4219786 4221267 D COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; general secretory pathway component, cryptic 4219786..4221267 Escherichia coli APEC O78 14484047 YP_007383246.1 CDS APECO78_20425 NC_020163.1 4221264 4222460 D COG1459 Type II secretory pathway, component PulF; general secretory pathway component, cryptic 4221264..4222460 Escherichia coli APEC O78 14484048 YP_007383247.1 CDS APECO78_20430 NC_020163.1 4222470 4222907 D COG2165 Type II secretory pathway, pseudopilin PulG; General secretion pathway protein G 4222470..4222907 Escherichia coli APEC O78 14484049 YP_007383248.1 CDS APECO78_20435 NC_020163.1 4222915 4223424 D COG2165 Type II secretory pathway, pseudopilin PulG; general secretion pathway protein H 4222915..4223424 Escherichia coli APEC O78 14484050 YP_007383249.1 CDS APECO78_20440 NC_020163.1 4223421 4223798 D COG2165 Type II secretory pathway, pseudopilin PulG; general secretion pathway protein i precursor 4223421..4223798 Escherichia coli APEC O78 14484051 YP_007383250.1 CDS APECO78_20445 NC_020163.1 4223791 4224378 D COG4795 Type II secretory pathway, component PulJ; putative general secretory pathway component, cryptic 4223791..4224378 Escherichia coli APEC O78 14484052 YP_007383251.1 CDS APECO78_20450 NC_020163.1 4224371 4225354 D COG3156 Type II secretory pathway, component PulK; general secretion pathway protein K 4224371..4225354 Escherichia coli APEC O78 14484053 YP_007383252.1 CDS APECO78_20455 NC_020163.1 4225369 4226532 D COG3297 Type II secretory pathway, component PulL; General secretion pathway protein L 4225369..4226532 Escherichia coli APEC O78 14484054 YP_007383253.1 CDS APECO78_20460 NC_020163.1 4226529 4226990 D general secretion pathway protein M 4226529..4226990 Escherichia coli APEC O78 14484055 YP_007383254.1 CDS APECO78_20465 NC_020163.1 4226990 4227667 D COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; bifunctional transmembrane prepilin leader peptidase/ methylase 4226990..4227667 Escherichia coli APEC O78 14484056 YP_007383255.1 CDS APECO78_20470 NC_020163.1 4227696 4228172 R COG2193 Bacterioferritin (cytochrome b1); bacterioferrin complement(4227696..4228172) Escherichia coli APEC O78 14484057 YP_007383256.1 CDS APECO78_20475 NC_020163.1 4228244 4228438 R COG2906 Bacterioferritin-associated ferredoxin; hypothetical protein complement(4228244..4228438) Escherichia coli APEC O78 14484058 YP_007383257.1 CDS APECO78_20480 NC_020163.1 4228607 4231300 R COG3979 Uncharacterized protein contain chitin-binding domain type 3; periplasmic endochitinase complement(4228607..4231300) Escherichia coli APEC O78 14484059 YP_007383258.1 CDS APECO78_20485 NC_020163.1 4231592 4232776 R COG0050 GTPases - translation elongation factors; Elongation factor Tu complement(4231592..4232776) Escherichia coli APEC O78 14484060 YP_007383259.1 CDS APECO78_20490 NC_020163.1 4232847 4234961 R COG0480 Translation elongation factors (GTPases); elongation factor G complement(4232847..4234961) Escherichia coli APEC O78 14484061 YP_007383260.1 CDS APECO78_20495 NC_020163.1 4235058 4235528 R COG0049 Ribosomal protein S7; 30S ribosomal protein S7 complement(4235058..4235528) Escherichia coli APEC O78 14484062 YP_007383261.1 CDS APECO78_20500 NC_020163.1 4235625 4235999 R COG0048 Ribosomal protein S12; 30S ribosomal protein S12 complement(4235625..4235999) Escherichia coli APEC O78 14484063 YP_007383262.1 CDS APECO78_20505 NC_020163.1 4236125 4236412 R COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur; sulfur transfer complex subunit TusB complement(4236125..4236412) Escherichia coli APEC O78 14484064 YP_007383263.1 CDS APECO78_20510 NC_020163.1 4236420 4236779 R COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; sulfur relay protein TusC complement(4236420..4236779) Escherichia coli APEC O78 14484065 YP_007383264.1 CDS APECO78_20515 NC_020163.1 4236779 4237165 R COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; hypothetical protein complement(4236779..4237165) Escherichia coli APEC O78 14484066 YP_007383265.1 CDS APECO78_20520 NC_020163.1 4237165 4237887 R COG2964 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4237165..4237887) Escherichia coli APEC O78 14484067 YP_007383266.1 CDS APECO78_20525 NC_020163.1 4238054 4238866 R COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; FKBP-type peptidyl-prolyl cis-trans isomerase complement(4238054..4238866) Escherichia coli APEC O78 14484068 YP_007383267.1 CDS APECO78_20530 NC_020163.1 4239087 4239305 D COG2900 Uncharacterized protein conserved in bacteria; phi X174 lysis protein 4239087..4239305 Escherichia coli APEC O78 14484069 YP_007383268.1 CDS APECO78_20535 NC_020163.1 4239354 4239944 R COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase complement(4239354..4239944) Escherichia coli APEC O78 14484070 YP_007383269.1 CDS APECO78_20540 NC_020163.1 4240039 4240239 R COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; hypothetical protein complement(4240039..4240239) Escherichia coli APEC O78 14484071 YP_007383270.1 CDS APECO78_20545 NC_020163.1 4240249 4242054 R COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein KefB complement(4240249..4242054) Escherichia coli APEC O78 14484072 YP_007383271.1 CDS APECO78_20550 NC_020163.1 4242054 4242605 R COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefG complement(4242054..4242605) Escherichia coli APEC O78 14484073 YP_007383272.1 CDS APECO78_20555 NC_020163.1 4242736 4244649 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 4242736..4244649 Escherichia coli APEC O78 14484074 YP_007383273.1 CDS APECO78_20560 NC_020163.1 4244649 4245671 D COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold; hydrolase 4244649..4245671 Escherichia coli APEC O78 14484075 YP_007383274.1 CDS APECO78_20565 NC_020163.1 4245665 4245883 D COG3089 Uncharacterized protein conserved in bacteria; hypothetical protein 4245665..4245883 Escherichia coli APEC O78 14484076 YP_007383275.1 CDS APECO78_20570 NC_020163.1 4245937 4246806 D COG3954 Phosphoribulokinase; phosphoribulokinase 4245937..4246806 Escherichia coli APEC O78 14484077 YP_007383276.1 CDS APECO78_20575 NC_020163.1 4246861 4247265 R COG1765 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein complement(4246861..4247265) Escherichia coli APEC O78 14484078 YP_007383277.1 CDS APECO78_20580 NC_020163.1 4247567 4248199 D COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; DNA-binding transcriptional dual regulator Crp 4247567..4248199 Escherichia coli APEC O78 14484079 YP_007383278.1 CDS APECO78_20585 NC_020163.1 4248250 4250340 D COG1289 Predicted membrane protein; hypothetical protein 4248250..4250340 Escherichia coli APEC O78 14484080 YP_007383279.1 CDS argD NC_020163.1 4250407 4251627 R COG4992 Ornithine/acetylornithine aminotransferase; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(4250407..4251627) Escherichia coli APEC O78 14484081 YP_007383280.1 CDS APECO78_20595 NC_020163.1 4251713 4252276 R COG0512 Anthranilate/para-aminobenzoate synthases component II; para-aminobenzoate synthase component II complement(4251713..4252276) Escherichia coli APEC O78 14484082 YP_007383281.1 CDS APECO78_20600 NC_020163.1 4252308 4252910 R COG2184 Protein involved in cell division; cell filamentation protein Fic complement(4252308..4252910) Escherichia coli APEC O78 14484083 YP_007383282.1 CDS APECO78_20605 NC_020163.1 4252900 4253067 R hypothetical protein complement(4252900..4253067) Escherichia coli APEC O78 14484084 YP_007383283.1 CDS APECO78_20610 NC_020163.1 4253172 4253744 R COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase A (rotamase A) complement(4253172..4253744) Escherichia coli APEC O78 14484085 YP_007383284.1 CDS APECO78_20615 NC_020163.1 4254015 4255196 D COG0477 Permeases of the major facilitator superfamily; transporter 4254015..4255196 Escherichia coli APEC O78 14484086 YP_007383285.1 CDS APECO78_20620 NC_020163.1 4255458 4258001 D COG1251 NAD(P)H-nitrite reductase; nitrite reductase subunit NirD 4255458..4258001 Escherichia coli APEC O78 14484087 YP_007383286.1 CDS APECO78_20625 NC_020163.1 4257998 4258324 D COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; nitrite reductase small subunit 4257998..4258324 Escherichia coli APEC O78 14484088 YP_007383287.1 CDS APECO78_20630 NC_020163.1 4258451 4259257 D COG2116 Formate/nitrite family of transporters; nitrite transporter NirC 4258451..4259257 Escherichia coli APEC O78 14484089 YP_007383288.1 CDS APECO78_20635 NC_020163.1 4259276 4260649 D COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); siroheme synthase 4259276..4260649 Escherichia coli APEC O78 14484090 YP_007383289.1 CDS APECO78_20640 NC_020163.1 4260896 4261063 D lipoprotein 4260896..4261063 Escherichia coli APEC O78 14484091 YP_007383290.1 CDS APECO78_20645 NC_020163.1 4261358 4262695 D COG0531 Amino acid transporters; fructoselysine transporter 4261358..4262695 Escherichia coli APEC O78 14484092 YP_007383291.1 CDS APECO78_20650 NC_020163.1 4262716 4263738 D COG2222 Predicted phosphosugar isomerases; SIS family protein 4262716..4263738 Escherichia coli APEC O78 14484093 YP_007383292.1 CDS APECO78_20655 NC_020163.1 4263788 4264618 D COG1082 Sugar phosphate isomerases/epimerases; fructoselysine 3-epimerase 4263788..4264618 Escherichia coli APEC O78 14484094 YP_007383293.1 CDS APECO78_20660 NC_020163.1 4264615 4265400 D COG0524 Sugar kinases, ribokinase family; fructoselysine 6-kinase 4264615..4265400 Escherichia coli APEC O78 14484095 YP_007383294.1 CDS APECO78_20665 NC_020163.1 4265500 4266231 D COG2188 Transcriptional regulators; DNA-binding transcriptional regulator FrlR 4265500..4266231 Escherichia coli APEC O78 14484096 YP_007383295.1 CDS APECO78_20670 NC_020163.1 4266383 4267468 R hypothetical protein complement(4266383..4267468) Escherichia coli APEC O78 14484097 YP_007383296.1 CDS APECO78_20675 NC_020163.1 4267480 4268784 R hypothetical protein complement(4267480..4268784) Escherichia coli APEC O78 14484098 YP_007383297.1 CDS APECO78_20680 NC_020163.1 4268796 4269149 R COG0698 Ribose 5-phosphate isomerase RpiB; hypothetical protein complement(4268796..4269149) Escherichia coli APEC O78 14484099 YP_007383298.1 CDS APECO78_20685 NC_020163.1 4269160 4270038 R COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold; hydrolase complement(4269160..4270038) Escherichia coli APEC O78 14484100 YP_007383299.1 CDS APECO78_20690 NC_020163.1 4270035 4271261 R COG1015 Phosphopentomutase; putative mutase complement(4270035..4271261) Escherichia coli APEC O78 14484101 YP_007383300.1 CDS APECO78_20695 NC_020163.1 4271261 4272424 R COG3457 Predicted amino acid racemase; amino acid racemase complement(4271261..4272424) Escherichia coli APEC O78 14484102 YP_007383301.1 CDS APECO78_20700 NC_020163.1 4272508 4272870 R hypothetical protein complement(4272508..4272870) Escherichia coli APEC O78 14484103 YP_007383302.1 CDS APECO78_20705 NC_020163.1 4272887 4273792 R hypothetical protein complement(4272887..4273792) Escherichia coli APEC O78 14484104 YP_007383303.1 CDS APECO78_20710 NC_020163.1 4274061 4275065 R COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA ligase complement(4274061..4275065) Escherichia coli APEC O78 14484105 YP_007383304.1 CDS APECO78_20715 NC_020163.1 4275058 4275816 R COG0546 Predicted phosphatases; phosphoglycolate phosphatase complement(4275058..4275816) Escherichia coli APEC O78 14484106 YP_007383305.1 CDS APECO78_20720 NC_020163.1 4275809 4276486 R COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase complement(4275809..4276486) Escherichia coli APEC O78 14484107 YP_007383306.1 CDS APECO78_20725 NC_020163.1 4276504 4277340 R COG0338 Site-specific DNA methylase; DNA adenine methylase complement(4276504..4277340) Escherichia coli APEC O78 14484108 YP_007383307.1 CDS APECO78_20730 NC_020163.1 4277447 4278733 R COG3266 Uncharacterized protein conserved in bacteria; cell division protein DamX complement(4277447..4278733) Escherichia coli APEC O78 14484109 YP_007383308.1 CDS APECO78_20735 NC_020163.1 4278825 4279913 R COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase complement(4278825..4279913) Escherichia coli APEC O78 14484110 YP_007383309.1 CDS aroK NC_020163.1 4279970 4280491 R COG0703 Shikimate kinase; shikimate kinase I complement(4279970..4280491) Escherichia coli APEC O78 14484111 YP_007383310.1 CDS APECO78_20745 NC_020163.1 4280892 4282130 R COG4796 Type II secretory pathway, component HofQ; fimbrial transporter complement(4280892..4282130) Escherichia coli APEC O78 14484112 YP_007383311.1 CDS APECO78_20750 NC_020163.1 4282042 4282446 R hypothetical protein complement(4282042..4282446) Escherichia coli APEC O78 14484113 YP_007383312.1 CDS APECO78_20755 NC_020163.1 4282436 4282876 R hypothetical protein complement(4282436..4282876) Escherichia coli APEC O78 14484114 YP_007383313.1 CDS APECO78_20760 NC_020163.1 4282860 4283399 R PilN family protein complement(4282860..4283399) Escherichia coli APEC O78 14484115 YP_007383314.1 CDS APECO78_20765 NC_020163.1 4283444 4284178 R putative pilus assembly protein complement(4283444..4284178) Escherichia coli APEC O78 14484116 YP_007383315.1 CDS mrcA NC_020163.1 4284298 4286850 D COG5009 Membrane carboxypeptidase/penicillin-binding protein; penicillin-binding protein 1a 4284298..4286850 Escherichia coli APEC O78 14484117 YP_007383316.1 CDS APECO78_20775 NC_020163.1 4287015 4287575 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; adenosine nucleotide hydrolase NudE complement(4287015..4287575) Escherichia coli APEC O78 14484118 YP_007383317.1 CDS APECO78_20780 NC_020163.1 4287895 4290030 D putative inner membrane protein 4287895..4290030 Escherichia coli APEC O78 14484119 YP_007383318.1 CDS APECO78_20785 NC_020163.1 4290095 4290763 D COG1011 Predicted hydrolase (HAD superfamily); GMP/IMP nucleotidase 4290095..4290763 Escherichia coli APEC O78 14484120 YP_007383319.1 CDS APECO78_20790 NC_020163.1 4290774 4291175 D COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); ribosome-associated heat shock protein Hsp15 4290774..4291175 Escherichia coli APEC O78 14484121 YP_007383320.1 CDS APECO78_20795 NC_020163.1 4291200 4292078 D COG1281 Disulfide bond chaperones of the HSP33 family; Hsp33-like chaperonin 4291200..4292078 Escherichia coli APEC O78 14484122 YP_007383321.1 CDS APECO78_20800 NC_020163.1 4292213 4293937 R putative inner membrane protein complement(4292213..4293937) Escherichia coli APEC O78 14484123 YP_007383322.1 CDS APECO78_20805 NC_020163.1 4294316 4295938 D COG1866 Phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase 4294316..4295938 Escherichia coli APEC O78 14484124 YP_007383323.1 CDS envZ NC_020163.1 4296014 4297366 R COG0642 Signal transduction histidine kinase; osmolarity sensor protein complement(4296014..4297366) Escherichia coli APEC O78 14484125 YP_007383324.1 CDS ompR NC_020163.1 4297363 4298082 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; osmolarity response regulator complement(4297363..4298082) Escherichia coli APEC O78 14484126 YP_007383325.1 CDS greB NC_020163.1 4298310 4298786 D COG0782 Transcription elongation factor; transcription elongation factor GreB 4298310..4298786 Escherichia coli APEC O78 14484127 YP_007383326.1 CDS APECO78_20825 NC_020163.1 4298883 4301204 D COG2183 Transcriptional accessory protein; transcriptional accessory protein 4298883..4301204 Escherichia coli APEC O78 14484128 YP_007383327.1 CDS APECO78_20830 NC_020163.1 4301642 4301869 D COG1918 Fe2+ transport system protein A; ferrous iron transport protein A 4301642..4301869 Escherichia coli APEC O78 14484129 YP_007383328.1 CDS APECO78_20835 NC_020163.1 4301886 4304207 D COG0370 Fe2+ transport system protein B; ferrous iron transport protein B 4301886..4304207 Escherichia coli APEC O78 14484130 YP_007383329.1 CDS APECO78_20840 NC_020163.1 4304207 4304443 D ferrous iron transport protein FeoC 4304207..4304443 Escherichia coli APEC O78 14484131 YP_007383330.1 CDS APECO78_20845 NC_020163.1 4304646 4305524 D transposase 4304646..4305524 Escherichia coli APEC O78 14484132 YP_007383331.1 CDS APECO78_20850 NC_020163.1 4305553 4306323 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); carboxylesterase BioH complement(4305553..4306323) Escherichia coli APEC O78 14484133 YP_007383332.1 CDS APECO78_20855 NC_020163.1 4306361 4307044 D COG1040 Predicted amidophosphoribosyltransferases; DNA utilization protein GntX 4306361..4307044 Escherichia coli APEC O78 14484134 YP_007383333.1 CDS APECO78_20860 NC_020163.1 4307103 4307678 D COG0316 Uncharacterized conserved protein; Fe/S biogenesis protein NfuA 4307103..4307678 Escherichia coli APEC O78 14484135 YP_007383334.1 CDS APECO78_20865 NC_020163.1 4308039 4309355 D COG2610 H+/gluconate symporter and related permeases; high-affinity gluconate transporter 4308039..4309355 Escherichia coli APEC O78 14484136 YP_007383335.1 CDS malQ NC_020163.1 4309400 4311484 R COG1640 4-alpha-glucanotransferase; 4-alpha-glucanotransferase complement(4309400..4311484) Escherichia coli APEC O78 14484137 YP_007383336.1 CDS APECO78_20875 NC_020163.1 4311494 4313887 R COG0058 Glucan phosphorylase; maltodextrin phosphorylase complement(4311494..4313887) Escherichia coli APEC O78 14484138 YP_007383337.1 CDS APECO78_20880 NC_020163.1 4314499 4317204 D COG2909 ATP-dependent transcriptional regulator; transcriptional regulator MalT 4314499..4317204 Escherichia coli APEC O78 14484139 YP_007383338.1 CDS APECO78_20885 NC_020163.1 4317247 4318263 R COG0430 RNA 3'-terminal phosphate cyclase; RNA 3'-terminal-phosphate cyclase complement(4317247..4318263) Escherichia coli APEC O78 14484140 YP_007383339.1 CDS APECO78_20890 NC_020163.1 4318267 4319493 R COG1690 Uncharacterized conserved protein; hypothetical protein complement(4318267..4319493) Escherichia coli APEC O78 14484141 YP_007383340.1 CDS APECO78_20895 NC_020163.1 4319682 4321280 D COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; transcriptional regulatory protein RtcR 4319682..4321280 Escherichia coli APEC O78 14484142 YP_007383341.1 CDS APECO78_20900 NC_020163.1 4321262 4322020 R COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor GlpR complement(4321262..4322020) Escherichia coli APEC O78 14484143 YP_007383342.1 CDS APECO78_20905 NC_020163.1 4322037 4322867 R COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); intramembrane serine protease GlpG complement(4322037..4322867) Escherichia coli APEC O78 14484144 YP_007383343.1 CDS APECO78_20910 NC_020163.1 4322912 4323238 R COG0607 Rhodanese-related sulfurtransferase; thiosulfate sulfurtransferase complement(4322912..4323238) Escherichia coli APEC O78 14484145 YP_007383344.1 CDS APECO78_20915 NC_020163.1 4323428 4324933 D COG0578 Glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 4323428..4324933 Escherichia coli APEC O78 14484146 YP_007383345.1 CDS APECO78_20920 NC_020163.1 4324987 4325592 R hypothetical protein complement(4324987..4325592) Escherichia coli APEC O78 14484147 YP_007383346.1 CDS APECO78_20925 NC_020163.1 4326365 4327075 R hypothetical protein complement(4326365..4327075) Escherichia coli APEC O78 14484148 YP_007383347.1 CDS APECO78_20930 NC_020163.1 4327090 4328607 R COG0226 ABC-type phosphate transport system, periplasmic component; membrane protein; ATP binding protein of ABC transporter complement(4327090..4328607) Escherichia coli APEC O78 14484149 YP_007383348.1 CDS APECO78_20935 NC_020163.1 4328723 4331170 R COG0058 Glucan phosphorylase; glycogen phosphorylase complement(4328723..4331170) Escherichia coli APEC O78 14484150 YP_007383349.1 CDS APECO78_20940 NC_020163.1 4331189 4332622 R COG0297 Glycogen synthase; glycogen synthase complement(4331189..4332622) Escherichia coli APEC O78 14484151 YP_007383350.1 CDS APECO78_20945 NC_020163.1 4332622 4333917 R COG0448 ADP-glucose pyrophosphorylase; glucose-1-phosphate adenylyltransferase complement(4332622..4333917) Escherichia coli APEC O78 14484152 YP_007383351.1 CDS APECO78_20950 NC_020163.1 4333935 4335908 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; glycogen debranching enzyme complement(4333935..4335908) Escherichia coli APEC O78 14484153 YP_007383352.1 CDS APECO78_20955 NC_020163.1 4335905 4338091 R COG0296 1,4-alpha-glucan branching enzyme; glycogen branching protein complement(4335905..4338091) Escherichia coli APEC O78 14484154 YP_007383353.1 CDS APECO78_20960 NC_020163.1 4338364 4339467 R COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase complement(4338364..4339467) Escherichia coli APEC O78 14484155 YP_007383354.1 CDS APECO78_20965 NC_020163.1 4339660 4340253 D COG2095 Multiple antibiotic transporter; antibiotic transporter 4339660..4340253 Escherichia coli APEC O78 14484156 YP_007383355.1 CDS APECO78_20970 NC_020163.1 4340310 4341650 R COG2610 H+/gluconate symporter and related permeases; low affinity gluconate transporter complement(4340310..4341650) Escherichia coli APEC O78 14484157 YP_007383356.1 CDS APECO78_20975 NC_020163.1 4341654 4342181 R COG3265 Gluconate kinase; gluconate kinase complement(4341654..4342181) Escherichia coli APEC O78 14484158 YP_007383357.1 CDS APECO78_20980 NC_020163.1 4342320 4343315 R COG1609 Transcriptional regulators; gluconate operon transcriptional regulator complement(4342320..4343315) Escherichia coli APEC O78 14484159 YP_007383358.1 CDS APECO78_20985 NC_020163.1 4343539 4344234 R COG1741 Pirin-related protein; protein yhhW complement(4343539..4344234) Escherichia coli APEC O78 14484160 YP_007383359.1 CDS APECO78_20990 NC_020163.1 4344357 4345394 R COG0673 Predicted dehydrogenases and related proteins; oxidoreductase complement(4344357..4345394) Escherichia coli APEC O78 14484161 YP_007383360.1 CDS APECO78_20995 NC_020163.1 4345727 4346215 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase YhhY 4345727..4346215 Escherichia coli APEC O78 14484162 YP_007383361.1 CDS APECO78_21000 NC_020163.1 4346325 4346609 D hypothetical protein 4346325..4346609 Escherichia coli APEC O78 14484163 YP_007383362.1 CDS ggt NC_020163.1 4346647 4348380 R COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase complement(4346647..4348380) Escherichia coli APEC O78 14484164 YP_007383363.1 CDS APECO78_21010 NC_020163.1 4348501 4348941 D hypothetical protein 4348501..4348941 Escherichia coli APEC O78 14484165 YP_007383364.1 CDS ugpQ NC_020163.1 4348928 4349671 R COG0584 Glycerophosphoryl diester phosphodiesterase; cytoplasmic glycerophosphodiester phosphodiesterase complement(4348928..4349671) Escherichia coli APEC O78 14484166 YP_007383365.1 CDS ugpC NC_020163.1 4349668 4350738 R COG3839 ABC-type sugar transport systems, ATPase components; glycerol-3-phosphate transporter ATP-binding subunit complement(4349668..4350738) Escherichia coli APEC O78 14484167 YP_007383366.1 CDS APECO78_21025 NC_020163.1 4350740 4351585 R COG0395 ABC-type sugar transport system, permease component; glycerol-3-phosphate transporter membrane protein complement(4350740..4351585) Escherichia coli APEC O78 14484168 YP_007383367.1 CDS APECO78_21030 NC_020163.1 4351582 4352469 R COG1175 ABC-type sugar transport systems, permease components; glycerol-3-phosphate transporter permease complement(4351582..4352469) Escherichia coli APEC O78 14484169 YP_007383368.1 CDS APECO78_21035 NC_020163.1 4352567 4353883 R COG1653 ABC-type sugar transport system, periplasmic component; glycerol-3-phosphate transporter periplasmic binding protein complement(4352567..4353883) Escherichia coli APEC O78 14484170 YP_007383369.1 CDS APECO78_21040 NC_020163.1 4354097 4354213 R hypothetical protein complement(4354097..4354213) Escherichia coli APEC O78 14484171 YP_007383370.1 CDS APECO78_21045 NC_020163.1 4354116 4354244 R hypothetical protein complement(4354116..4354244) Escherichia coli APEC O78 14484172 YP_007383371.1 CDS APECO78_21050 NC_020163.1 4354280 4354981 R COG0410 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine transporter complement(4354280..4354981) Escherichia coli APEC O78 14484173 YP_007383372.1 CDS APECO78_21055 NC_020163.1 4354995 4355762 R COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine transporter ATP-binding subunit complement(4354995..4355762) Escherichia coli APEC O78 14484174 YP_007383373.1 CDS livM NC_020163.1 4355759 4357036 R COG4177 ABC-type branched-chain amino acid transport system, permease component; leucine/isoleucine/valine transporter permease subunit complement(4355759..4357036) Escherichia coli APEC O78 14484175 YP_007383374.1 CDS APECO78_21065 NC_020163.1 4357033 4357959 R COG0559 Branched-chain amino acid ABC-type transport system, permease components; branched-chain amino acid transporter permease subunit LivH complement(4357033..4357959) Escherichia coli APEC O78 14484176 YP_007383375.1 CDS APECO78_21070 NC_020163.1 4358007 4359116 R COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine ABC transporter subunit substrate-binding protein LivK complement(4358007..4359116) Escherichia coli APEC O78 14484177 YP_007383376.1 CDS APECO78_21075 NC_020163.1 4359540 4359923 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 4359540..4359923 Escherichia coli APEC O78 14484178 YP_007383377.1 CDS APECO78_21080 NC_020163.1 4359920 4360447 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein complement(4359920..4360447) Escherichia coli APEC O78 14484179 YP_007383378.1 CDS APECO78_21085 NC_020163.1 4360454 4360720 R COG4453 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4360454..4360720) Escherichia coli APEC O78 14484180 YP_007383379.1 CDS APECO78_21090 NC_020163.1 4360870 4361973 R COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine ABC transporter subunit substrate-binding protein LivK complement(4360870..4361973) Escherichia coli APEC O78 14484181 YP_007383380.1 CDS APECO78_21095 NC_020163.1 4362245 4363099 R COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase factor sigma-32 complement(4362245..4363099) Escherichia coli APEC O78 14484182 YP_007383381.1 CDS APECO78_21100 NC_020163.1 4363344 4364402 R COG2177 Cell division protein; cell division protein complement(4363344..4364402) Escherichia coli APEC O78 14484183 YP_007383382.1 CDS APECO78_21105 NC_020163.1 4364395 4365063 R COG2884 Predicted ATPase involved in cell division; cell division protein FtsE complement(4364395..4365063) Escherichia coli APEC O78 14484184 YP_007383383.1 CDS APECO78_21110 NC_020163.1 4365066 4366559 R COG0552 Signal recognition particle GTPase; signal recognition particle-docking protein FtsY complement(4365066..4366559) Escherichia coli APEC O78 14484185 YP_007383384.1 CDS rsmD NC_020163.1 4366709 4367305 D COG0742 N6-adenine-specific methylase; 16S rRNA m(2)G966-methyltransferase 4366709..4367305 Escherichia coli APEC O78 14484186 YP_007383385.1 CDS APECO78_21120 NC_020163.1 4367295 4367564 D COG3776 Predicted membrane protein; hypothetical protein 4367295..4367564 Escherichia coli APEC O78 14484187 YP_007383386.1 CDS APECO78_21125 NC_020163.1 4367567 4367926 R hypothetical protein complement(4367567..4367926) Escherichia coli APEC O78 14484188 YP_007383387.1 CDS APECO78_21130 NC_020163.1 4368067 4368693 D COG3714 Predicted membrane protein; hypothetical protein 4368067..4368693 Escherichia coli APEC O78 14484189 YP_007383388.1 CDS zntA NC_020163.1 4368767 4370965 D COG2217 Cation transport ATPase; zinc/cadmium/mercury/lead-transporting ATPase 4368767..4370965 Escherichia coli APEC O78 14484190 YP_007383389.1 CDS APECO78_21140 NC_020163.1 4371067 4371312 R COG0425 Predicted redox protein, regulator of disulfide bond formation; sulfur transfer protein SirA complement(4371067..4371312) Escherichia coli APEC O78 14484191 YP_007383390.1 CDS APECO78_21145 NC_020163.1 4371533 4372198 D COG1738 Uncharacterized conserved protein; hypothetical protein 4371533..4372198 Escherichia coli APEC O78 14484192 YP_007383391.1 CDS APECO78_21150 NC_020163.1 4372271 4372828 D hypothetical protein 4372271..4372828 Escherichia coli APEC O78 14484193 YP_007383392.1 CDS APECO78_21155 NC_020163.1 4372832 4374049 R COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily transporter complement(4372832..4374049) Escherichia coli APEC O78 14484194 YP_007383393.1 CDS APECO78_21160 NC_020163.1 4374181 4375230 D COG0628 Predicted permease; inner membrane protein 4374181..4375230 Escherichia coli APEC O78 14484195 YP_007383394.1 CDS APECO78_21165 NC_020163.1 4375285 4375872 D COG2091 Phosphopantetheinyl transferase; holo-ACP synthase 4375285..4375872 Escherichia coli APEC O78 14484196 YP_007383395.1 CDS APECO78_21170 NC_020163.1 4375983 4377557 D COG0747 ABC-type dipeptide transport system, periplasmic component; nickel ABC transporter periplasmic-binding protein 4375983..4377557 Escherichia coli APEC O78 14484197 YP_007383396.1 CDS APECO78_21175 NC_020163.1 4377557 4378501 D COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; nickel transporter permease NikB 4377557..4378501 Escherichia coli APEC O78 14484198 YP_007383397.1 CDS APECO78_21180 NC_020163.1 4378498 4379331 D COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; nickel transporter permease NikC 4378498..4379331 Escherichia coli APEC O78 14484199 YP_007383398.1 CDS APECO78_21185 NC_020163.1 4379331 4380095 D COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; nickel transporter subunit 4379331..4380095 Escherichia coli APEC O78 14484200 YP_007383399.1 CDS nikE NC_020163.1 4380092 4380898 D COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; nickel transporter ATP-binding protein NikE 4380092..4380898 Escherichia coli APEC O78 14484201 YP_007383400.1 CDS APECO78_21195 NC_020163.1 4380904 4381305 D COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator 4380904..4381305 Escherichia coli APEC O78 14484202 YP_007383401.1 CDS APECO78_21200 NC_020163.1 4381425 4381784 R COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters; HicB family protein complement(4381425..4381784) Escherichia coli APEC O78 14484203 YP_007383402.1 CDS APECO78_21205 NC_020163.1 4382115 4383239 R COG0842 ABC-type multidrug transport system, permease component; putative transport protein complement(4382115..4383239) Escherichia coli APEC O78 14484204 YP_007383403.1 CDS APECO78_21210 NC_020163.1 4383239 4385974 R COG1131 ABC-type multidrug transport system, ATPase component; putative ABC transporter ATP-binding protein complement(4383239..4385974) Escherichia coli APEC O78 14484205 YP_007383404.1 CDS APECO78_21215 NC_020163.1 4385971 4387038 R COG0845 Membrane-fusion protein; HlyD family secretion protein complement(4385971..4387038) Escherichia coli APEC O78 14484206 YP_007383405.1 CDS APECO78_21220 NC_020163.1 4387404 4389026 R hypothetical protein complement(4387404..4389026) Escherichia coli APEC O78 14484207 YP_007383406.1 CDS APECO78_21225 NC_020163.1 4389288 4390877 R hypothetical protein complement(4389288..4390877) Escherichia coli APEC O78 14484208 YP_007383407.1 CDS APECO78_21230 NC_020163.1 4391261 4392313 D hypothetical protein 4391261..4392313 Escherichia coli APEC O78 14484209 YP_007383408.1 CDS APECO78_21235 NC_020163.1 4392407 4392493 R hypothetical protein complement(4392407..4392493) Escherichia coli APEC O78 14484210 YP_007383409.1 CDS APECO78_21240 NC_020163.1 4392628 4393830 R COG2081 Predicted flavoproteins; putative oxidoreductase complement(4392628..4393830) Escherichia coli APEC O78 14484211 YP_007383410.1 CDS APECO78_21245 NC_020163.1 4394062 4395561 D COG0306 Phosphate/sulphate permeases; Low-affinity inorganic phosphate transporter 1 4394062..4395561 Escherichia coli APEC O78 14484212 YP_007383411.1 CDS APECO78_21250 NC_020163.1 4395632 4395967 R universal stress protein UspB complement(4395632..4395967) Escherichia coli APEC O78 14484213 YP_007383412.1 CDS APECO78_21255 NC_020163.1 4396358 4396792 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein A 4396358..4396792 Escherichia coli APEC O78 14484214 YP_007383413.1 CDS APECO78_21260 NC_020163.1 4397110 4398579 D COG3104 Dipeptide/tripeptide permease; dipeptide/tripeptide permease B 4397110..4398579 Escherichia coli APEC O78 14484215 YP_007383414.1 CDS APECO78_21265 NC_020163.1 4398628 4399380 R COG0500 SAM-dependent methyltransferases; methyltransferase complement(4398628..4399380) Escherichia coli APEC O78 14484216 YP_007383415.1 CDS APECO78_21270 NC_020163.1 4399388 4401430 R COG0339 Zn-dependent oligopeptidases; oligopeptidase A complement(4399388..4401430) Escherichia coli APEC O78 14484217 YP_007383416.1 CDS APECO78_21275 NC_020163.1 4401633 4402475 D COG2961 Protein involved in catabolism of external DNA; DNA processing protein 4401633..4402475 Escherichia coli APEC O78 14484218 YP_007383417.1 CDS APECO78_21280 NC_020163.1 4402547 4403899 D COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; glutathione reductase 4402547..4403899 Escherichia coli APEC O78 14484219 YP_007383418.1 CDS APECO78_21285 NC_020163.1 4403953 4404102 R hypothetical protein complement(4403953..4404102) Escherichia coli APEC O78 14484220 YP_007383419.1 CDS APECO78_21290 NC_020163.1 4404776 4405129 D COG0640 Predicted transcriptional regulators; DNA-binding transcriptional repressor ArsR 4404776..4405129 Escherichia coli APEC O78 14484221 YP_007383420.1 CDS APECO78_21295 NC_020163.1 4405183 4406472 D COG1055 Na+/H+ antiporter NhaD and related arsenite permeases; arsenical pump membrane protein 4405183..4406472 Escherichia coli APEC O78 14484222 YP_007383421.1 CDS APECO78_21300 NC_020163.1 4406485 4406910 D COG1393 Arsenate reductase and related proteins, glutaredoxin family; arsenate reductase 4406485..4406910 Escherichia coli APEC O78 14484223 YP_007383422.1 CDS APECO78_21305 NC_020163.1 4407535 4408380 D hypothetical protein 4407535..4408380 Escherichia coli APEC O78 14484224 YP_007383423.1 CDS APECO78_21310 NC_020163.1 4409005 4409571 D COG3065 Starvation-inducible outer membrane lipoprotein; outer membrane lipoprotein 4409005..4409571 Escherichia coli APEC O78 14484225 YP_007383424.1 CDS APECO78_21315 NC_020163.1 4409727 4410257 D COG0055 F0F1-type ATP synthase, beta subunit; hypothetical protein 4409727..4410257 Escherichia coli APEC O78 14484226 YP_007383425.1 CDS APECO78_21320 NC_020163.1 4410299 4410946 R COG1285 Uncharacterized membrane protein; putative Mg(2+) transport ATPase complement(4410299..4410946) Escherichia coli APEC O78 14484227 YP_007383426.1 CDS hdeB NC_020163.1 4411010 4411348 R acid-resistance protein complement(4411010..4411348) Escherichia coli APEC O78 14484228 YP_007383427.1 CDS APECO78_21330 NC_020163.1 4411452 4411784 R acid-resistance protein complement(4411452..4411784) Escherichia coli APEC O78 14484229 YP_007383428.1 CDS APECO78_21335 NC_020163.1 4412039 4412611 D COG3247 Uncharacterized conserved protein; acid-resistance membrane protein 4412039..4412611 Escherichia coli APEC O78 14484230 YP_007383429.1 CDS APECO78_21340 NC_020163.1 4413410 4413937 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator 4413410..4413937 Escherichia coli APEC O78 14484231 YP_007383430.1 CDS APECO78_21345 NC_020163.1 4413938 4414216 R hypothetical protein complement(4413938..4414216) Escherichia coli APEC O78 14484232 YP_007383431.1 CDS APECO78_21350 NC_020163.1 4414254 4414370 R hypothetical protein complement(4414254..4414370) Escherichia coli APEC O78 14484233 YP_007383432.1 CDS APECO78_21355 NC_020163.1 4414276 4415433 D COG0845 Membrane-fusion protein; multidrug efflux system protein MdtE 4414276..4415433 Escherichia coli APEC O78 14484234 YP_007383433.1 CDS APECO78_21360 NC_020163.1 4415458 4418571 D COG0841 Cation/multidrug efflux pump; multidrug transporter MdtF, RpoS-dependent 4415458..4418571 Escherichia coli APEC O78 14484235 YP_007383434.1 CDS APECO78_21365 NC_020163.1 4418934 4419662 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator GadW complement(4418934..4419662) Escherichia coli APEC O78 14484236 YP_007383435.1 CDS APECO78_21370 NC_020163.1 4420030 4420854 R COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator GadX complement(4420030..4420854) Escherichia coli APEC O78 14484237 YP_007383436.1 CDS APECO78_21375 NC_020163.1 4421224 4422624 R COG0076 Glutamate decarboxylase and related PLP-dependent proteins; glutamate decarboxylase complement(4421224..4422624) Escherichia coli APEC O78 14484238 YP_007383437.1 CDS APECO78_21380 NC_020163.1 4422835 4424232 R COG1858 Cytochrome c peroxidase; cytochrome C peroxidase complement(4422835..4424232) Escherichia coli APEC O78 14484239 YP_007383438.1 CDS APECO78_21385 NC_020163.1 4424637 4426286 D COG1626 Neutral trehalase; cytoplasmic trehalase 4424637..4426286 Escherichia coli APEC O78 14484240 YP_007383439.1 CDS APECO78_21390 NC_020163.1 4426337 4426939 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; HTH-type transcriptional regulator yhjB complement(4426337..4426939) Escherichia coli APEC O78 14484241 YP_007383440.1 CDS APECO78_21395 NC_020163.1 4427387 4428358 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 4427387..4428358 Escherichia coli APEC O78 14484242 YP_007383441.1 CDS APECO78_21400 NC_020163.1 4428407 4429420 D COG1295 Predicted membrane protein; ribonuclease 4428407..4429420 Escherichia coli APEC O78 14484243 YP_007383442.1 CDS APECO78_21405 NC_020163.1 4429831 4431153 D COG0477 Permeases of the major facilitator superfamily; putative transporter 4429831..4431153 Escherichia coli APEC O78 14484244 YP_007383443.1 CDS APECO78_21410 NC_020163.1 4431387 4433447 R COG2982 Uncharacterized protein involved in outer membrane biogenesis; outer membrane biogenesis protein complement(4431387..4433447) Escherichia coli APEC O78 14484245 YP_007383444.1 CDS APECO78_21415 NC_020163.1 4433517 4434284 R COG2200 FOG: EAL domain; cyclic-di-GMP phosphodiesterase complement(4433517..4434284) Escherichia coli APEC O78 14484246 YP_007383445.1 CDS APECO78_21420 NC_020163.1 4434516 4435445 D COG0524 Sugar kinases, ribokinase family; ketodeoxygluconokinase KdgK 4434516..4435445 Escherichia coli APEC O78 14484247 YP_007383446.1 CDS APECO78_21425 NC_020163.1 4435541 4437037 R COG0612 Predicted Zn-dependent peptidases; hypothetical protein complement(4435541..4437037) Escherichia coli APEC O78 14484248 YP_007383447.1 CDS APECO78_21430 NC_020163.1 4437258 4438544 R COG1301 Na+/H+-dicarboxylate symporters; C4-dicarboxylate transporter DctA complement(4437258..4438544) Escherichia coli APEC O78 14484249 YP_007383448.1 CDS APECO78_21435 NC_020163.1 4438727 4440682 R COG2199 FOG: GGDEF domain; diguanylate cyclase complement(4438727..4440682) Escherichia coli APEC O78 14484250 YP_007383449.1 CDS APECO78_21440 NC_020163.1 4440797 4444270 R COG0457 FOG: TPR repeat; Cellulose synthase operon C domain protein precursor complement(4440797..4444270) Escherichia coli APEC O78 14484251 YP_007383450.1 CDS APECO78_21445 NC_020163.1 4444252 4445358 R COG3405 Endoglucanase Y; endo-1,4-D-glucanase complement(4444252..4445358) Escherichia coli APEC O78 14484252 YP_007383451.1 CDS APECO78_21450 NC_020163.1 4445365 4447704 R cellulose synthase regulator protein complement(4445365..4447704) Escherichia coli APEC O78 14484253 YP_007383452.1 CDS bcsA NC_020163.1 4447715 4450333 R COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; cellulose synthase catalytic subunit complement(4447715..4450333) Escherichia coli APEC O78 14484254 YP_007383453.1 CDS APECO78_21460 NC_020163.1 4450330 4451082 R COG1192 ATPases involved in chromosome partitioning; cell division protein complement(4450330..4451082) Escherichia coli APEC O78 14484255 YP_007383454.1 CDS APECO78_21465 NC_020163.1 4451094 4451282 R hypothetical protein complement(4451094..4451282) Escherichia coli APEC O78 14484256 YP_007383455.1 CDS APECO78_21470 NC_020163.1 4451555 4453126 D hypothetical protein 4451555..4453126 Escherichia coli APEC O78 14484257 YP_007383456.1 CDS APECO78_21475 NC_020163.1 4453123 4453314 D hypothetical protein 4453123..4453314 Escherichia coli APEC O78 14484258 YP_007383457.1 CDS APECO78_21480 NC_020163.1 4453311 4454990 D hypothetical protein 4453311..4454990 Escherichia coli APEC O78 14484259 YP_007383458.1 CDS APECO78_21485 NC_020163.1 4455077 4455184 R hypothetical protein complement(4455077..4455184) Escherichia coli APEC O78 14484260 YP_007383459.1 CDS APECO78_21490 NC_020163.1 4455560 4455667 R hypothetical protein complement(4455560..4455667) Escherichia coli APEC O78 14484261 YP_007383460.1 CDS APECO78_21495 NC_020163.1 4456043 4456150 R hypothetical protein complement(4456043..4456150) Escherichia coli APEC O78 14484262 YP_007383461.1 CDS APECO78_21500 NC_020163.1 4456526 4456633 R hypothetical protein complement(4456526..4456633) Escherichia coli APEC O78 14484263 YP_007383462.1 CDS APECO78_21505 NC_020163.1 4457109 4458380 D COG0814 Amino acid permeases; putative transporter 4457109..4458380 Escherichia coli APEC O78 14484264 YP_007383463.1 CDS dppF NC_020163.1 4458410 4459414 R COG4608 ABC-type oligopeptide transport system, ATPase component; dipeptide transporter ATP-binding subunit complement(4458410..4459414) Escherichia coli APEC O78 14484265 YP_007383464.1 CDS APECO78_21515 NC_020163.1 4459411 4460394 R COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; dipeptide transporter ATP-binding subunit complement(4459411..4460394) Escherichia coli APEC O78 14484266 YP_007383465.1 CDS APECO78_21520 NC_020163.1 4460405 4461307 R COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transporter complement(4460405..4461307) Escherichia coli APEC O78 14484267 YP_007383466.1 CDS APECO78_21525 NC_020163.1 4461317 4462336 R COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transporter permease DppB complement(4461317..4462336) Escherichia coli APEC O78 14484268 YP_007383467.1 CDS APECO78_21530 NC_020163.1 4462507 4462581 D hypothetical protein 4462507..4462581 Escherichia coli APEC O78 14484269 YP_007383468.1 CDS APECO78_21535 NC_020163.1 4462644 4464251 R COG0747 ABC-type dipeptide transport system, periplasmic component; dipeptide transport protein complement(4462644..4464251) Escherichia coli APEC O78 14484270 YP_007383469.1 CDS APECO78_21540 NC_020163.1 4465333 4467024 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; phosphoethanolamine transferase complement(4465333..4467024) Escherichia coli APEC O78 14484656 YP_007383470.1 CDS APECO78_21545 NC_020163.1 4467348 4468556 R COG0477 Permeases of the major facilitator superfamily; oxalate/formate antiporter protein complement(4467348..4468556) Escherichia coli APEC O78 14484272 YP_007383471.1 CDS APECO78_21550 NC_020163.1 4468785 4469483 R putative lipase complement(4468785..4469483) Escherichia coli APEC O78 14484273 YP_007383472.1 CDS APECO78_21555 NC_020163.1 4469641 4470204 D COG2818 3-methyladenine DNA glycosylase; 3-methyl-adenine DNA glycosylase I 4469641..4470204 Escherichia coli APEC O78 14484274 YP_007383473.1 CDS APECO78_21560 NC_020163.1 4470201 4470641 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 4470201..4470641 Escherichia coli APEC O78 14484275 YP_007383474.1 CDS bisC NC_020163.1 4470610 4472943 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; biotin sulfoxide reductase complement(4470610..4472943) Escherichia coli APEC O78 14484276 YP_007383475.1 CDS APECO78_21570 NC_020163.1 4473096 4473755 D COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane lipoprotein 4473096..4473755 Escherichia coli APEC O78 14484277 YP_007383476.1 CDS APECO78_21575 NC_020163.1 4473859 4474833 D COG1052 Lactate dehydrogenase and related dehydrogenases; 2-ketoaldonate reductase/glyoxylate reductase B 4473859..4474833 Escherichia coli APEC O78 14484278 YP_007383477.1 CDS APECO78_21580 NC_020163.1 4474883 4475593 R hypothetical protein complement(4474883..4475593) Escherichia coli APEC O78 14484279 YP_007383478.1 CDS APECO78_21585 NC_020163.1 4476027 4476317 D COG2944 Predicted transcriptional regulator; transcriptional regulator 4476027..4476317 Escherichia coli APEC O78 14484280 YP_007383479.1 CDS APECO78_21590 NC_020163.1 4476598 4476810 D COG1278 Cold shock proteins; RNA chaperone/anti-terminator 4476598..4476810 Escherichia coli APEC O78 14484281 YP_007383480.1 CDS APECO78_21595 NC_020163.1 4476998 4477210 R small toxic polypeptide complement(4476998..4477210) Escherichia coli APEC O78 14484282 YP_007383481.1 CDS glyS NC_020163.1 4477476 4479545 R COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA ligase subunit beta complement(4477476..4479545) Escherichia coli APEC O78 14484283 YP_007383482.1 CDS APECO78_21605 NC_020163.1 4479555 4480466 R COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase subunit alpha complement(4479555..4480466) Escherichia coli APEC O78 14484284 YP_007383483.1 CDS APECO78_21610 NC_020163.1 4480561 4480860 R outer membrane lipoprotein complement(4480561..4480860) Escherichia coli APEC O78 14484285 YP_007383484.1 CDS APECO78_21615 NC_020163.1 4481035 4482030 D COG3274 Uncharacterized protein conserved in bacteria; O-acetyltransferase 4481035..4482030 Escherichia coli APEC O78 14484286 YP_007383485.1 CDS APECO78_21620 NC_020163.1 4482072 4482509 R COG4682 Predicted membrane protein; Inner membrane protein yiaA complement(4482072..4482509) Escherichia coli APEC O78 14484287 YP_007383486.1 CDS APECO78_21625 NC_020163.1 4482555 4482896 R COG4682 Predicted membrane protein; hypothetical protein complement(4482555..4482896) Escherichia coli APEC O78 14484288 YP_007383487.1 CDS APECO78_21630 NC_020163.1 4483065 4484519 R COG1070 Sugar (pentulose and hexulose) kinases; xylulokinase complement(4483065..4484519) Escherichia coli APEC O78 14484289 YP_007383488.1 CDS APECO78_21635 NC_020163.1 4484591 4485913 R COG2115 Xylose isomerase; xylose isomerase complement(4484591..4485913) Escherichia coli APEC O78 14484290 YP_007383489.1 CDS xylF NC_020163.1 4486279 4487271 D COG4213 ABC-type xylose transport system, periplasmic component; D-xylose transporter subunit XylF 4486279..4487271 Escherichia coli APEC O78 14484291 YP_007383490.1 CDS APECO78_21645 NC_020163.1 4487349 4488890 D COG1129 ABC-type sugar transport system, ATPase component; xylose transporter ATP-binding subunit 4487349..4488890 Escherichia coli APEC O78 14484292 YP_007383491.1 CDS APECO78_21650 NC_020163.1 4488868 4490049 D COG4214 ABC-type xylose transport system, permease component; putative membrane component of xylose transport system 4488868..4490049 Escherichia coli APEC O78 14484293 YP_007383492.1 CDS APECO78_21655 NC_020163.1 4490127 4491305 D COG1609 Transcriptional regulators; putative xyl operon regulator 4490127..4491305 Escherichia coli APEC O78 14484294 YP_007383493.1 CDS APECO78_21660 NC_020163.1 4491413 4492237 R COG2992 Uncharacterized FlgJ-related protein; hypothetical protein complement(4491413..4492237) Escherichia coli APEC O78 14484295 YP_007383494.1 CDS malS NC_020163.1 4492557 4494587 D COG0366 Glycosidases; alpha-amylase 4492557..4494587 Escherichia coli APEC O78 14484296 YP_007383495.1 CDS avtA NC_020163.1 4494765 4496018 D COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase; valine--pyruvate transaminase 4494765..4496018 Escherichia coli APEC O78 14484297 YP_007383496.1 CDS APECO78_21675 NC_020163.1 4496022 4496150 D hypothetical protein 4496022..4496150 Escherichia coli APEC O78 14484298 YP_007383497.1 CDS APECO78_21680 NC_020163.1 4496169 4496642 R COG1142 Fe-S-cluster-containing hydrogenase components 2; hydrogenase, 4Fe-4S ferredoxin-type component complement(4496169..4496642) Escherichia coli APEC O78 14484299 YP_007383498.1 CDS APECO78_21685 NC_020163.1 4496744 4497592 R COG1414 Transcriptional regulator; DNA-binding transcriptional repressor complement(4496744..4497592) Escherichia coli APEC O78 14484300 YP_007383499.1 CDS APECO78_21690 NC_020163.1 4497793 4498791 D COG2055 Malate/L-lactate dehydrogenases; 2,3-diketo-L-gulonate reductase 4497793..4498791 Escherichia coli APEC O78 14484301 YP_007383500.1 CDS APECO78_21695 NC_020163.1 4498803 4499270 D COG2731 Beta-galactosidase, beta subunit; hypothetical protein 4498803..4499270 Escherichia coli APEC O78 14484302 YP_007383501.1 CDS APECO78_21700 NC_020163.1 4499388 4499861 D COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; 2,3-diketo-L-gulonate TRAP transporter small permease 4499388..4499861 Escherichia coli APEC O78 14484303 YP_007383502.1 CDS APECO78_21705 NC_020163.1 4499864 4501141 D COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; L-dehydroascorbate transporter large permease subunit 4499864..4501141 Escherichia coli APEC O78 14484304 YP_007383503.1 CDS APECO78_21710 NC_020163.1 4501154 4502140 D COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; TRAP family 2,3-diketo-L-gulonate transporter periplasmic 2,3-diketo-L-gulonate-binding protein 4501154..4502140 Escherichia coli APEC O78 14484305 YP_007383504.1 CDS APECO78_21715 NC_020163.1 4502144 4503640 D COG1070 Sugar (pentulose and hexulose) kinases; L-xylulose/3-keto-L-gulonate kinase 4502144..4503640 Escherichia coli APEC O78 14484306 YP_007383505.1 CDS sgbH NC_020163.1 4503637 4504299 D COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 4503637..4504299 Escherichia coli APEC O78 14484307 YP_007383506.1 CDS APECO78_21725 NC_020163.1 4504292 4505152 D COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 4504292..4505152 Escherichia coli APEC O78 14484308 YP_007383507.1 CDS APECO78_21730 NC_020163.1 4505146 4505841 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 4505146..4505841 Escherichia coli APEC O78 14484309 YP_007383508.1 CDS APECO78_21735 NC_020163.1 4506008 4506148 R hypothetical protein complement(4506008..4506148) Escherichia coli APEC O78 14484310 YP_007383509.1 CDS APECO78_21740 NC_020163.1 4506188 4506928 R COG3713 Outer membrane protein V; outer membrane protein complement(4506188..4506928) Escherichia coli APEC O78 14484311 YP_007383510.1 CDS APECO78_21745 NC_020163.1 4507052 4508026 D COG0583 Transcriptional regulator; putative DNA-binding transcriptional regulator 4507052..4508026 Escherichia coli APEC O78 14484312 YP_007383511.1 CDS APECO78_21750 NC_020163.1 4508023 4509159 R COG1566 Multidrug resistance efflux pump; membrane fusion protein (MFP) component of efflux pump, signal anchor complement(4508023..4509159) Escherichia coli APEC O78 14484313 YP_007383512.1 CDS APECO78_21755 NC_020163.1 4509165 4509488 R hypothetical protein complement(4509165..4509488) Escherichia coli APEC O78 14484314 YP_007383513.1 CDS APECO78_21760 NC_020163.1 4510033 4511571 R COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase B complement(4510033..4511571) Escherichia coli APEC O78 14484315 YP_007383514.1 CDS APECO78_21765 NC_020163.1 4511736 4512887 R COG1454 Alcohol dehydrogenase, class IV; alcohol dehydrogenase complement(4511736..4512887) Escherichia coli APEC O78 14484316 YP_007383515.1 CDS APECO78_21770 NC_020163.1 4513077 4514921 R COG3276 Selenocysteine-specific translation elongation factor; selenocysteinyl-tRNA-specific translation factor complement(4513077..4514921) Escherichia coli APEC O78 14484317 YP_007383516.1 CDS APECO78_21775 NC_020163.1 4514918 4516309 R COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase complement(4514918..4516309) Escherichia coli APEC O78 14484318 YP_007383517.1 CDS APECO78_21780 NC_020163.1 4516407 4517015 R COG0625 Glutathione S-transferase; glutathione S-transferase complement(4516407..4517015) Escherichia coli APEC O78 14484319 YP_007383518.1 CDS APECO78_21785 NC_020163.1 4517244 4517576 D COG3209 Rhs family protein; rhsA element core protein RshA 4517244..4517576 Escherichia coli APEC O78 14484320 YP_007383519.1 CDS APECO78_21790 NC_020163.1 4517534 4521376 D COG3209 Rhs family protein; rhsA element core protein RshA 4517534..4521376 Escherichia coli APEC O78 14484321 YP_007383520.1 CDS APECO78_21795 NC_020163.1 4521397 4522140 D COG1413 FOG: HEAT repeat; lyase 4521397..4522140 Escherichia coli APEC O78 14484322 YP_007383521.1 CDS APECO78_21800 NC_020163.1 4522280 4523224 D COG3209 Rhs family protein; Rhs family protein 4522280..4523224 Escherichia coli APEC O78 14484323 YP_007383522.1 CDS APECO78_21805 NC_020163.1 4523236 4523697 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 4523236..4523697 Escherichia coli APEC O78 14484324 YP_007383523.1 CDS APECO78_21810 NC_020163.1 4524404 4524841 D hypothetical protein 4524404..4524841 Escherichia coli APEC O78 14484325 YP_007383524.1 CDS APECO78_21815 NC_020163.1 4525301 4526437 R COG1566 Multidrug resistance efflux pump; hypothetical protein complement(4525301..4526437) Escherichia coli APEC O78 14484326 YP_007383525.1 CDS APECO78_21820 NC_020163.1 4526440 4526802 R hypothetical protein complement(4526440..4526802) Escherichia coli APEC O78 14484327 YP_007383526.1 CDS APECO78_21825 NC_020163.1 4527339 4529252 D COG2213 Phosphotransferase system, mannitol-specific IIBC component; PTS system mannitol-specific transporter subunit IICBA 4527339..4529252 Escherichia coli APEC O78 14484328 YP_007383527.1 CDS APECO78_21830 NC_020163.1 4529482 4530630 D COG0246 Mannitol-1-phosphate/altronate dehydrogenases; mannitol-1-phosphate 5-dehydrogenase 4529482..4530630 Escherichia coli APEC O78 14484329 YP_007383528.1 CDS mtlR NC_020163.1 4530630 4531217 D COG3722 Transcriptional regulator; mannitol repressor protein 4530630..4531217 Escherichia coli APEC O78 14484330 YP_007383529.1 CDS APECO78_21840 NC_020163.1 4531229 4531438 R hypothetical protein complement(4531229..4531438) Escherichia coli APEC O78 14484331 YP_007383530.1 CDS APECO78_21845 NC_020163.1 4531723 4532085 D hypothetical protein 4531723..4532085 Escherichia coli APEC O78 14484332 YP_007383531.1 CDS APECO78_21850 NC_020163.1 4532628 4533311 D hypothetical protein 4532628..4533311 Escherichia coli APEC O78 14484333 YP_007383532.1 CDS APECO78_21855 NC_020163.1 4533355 4538205 D COG5295 Autotransporter adhesin; adhesin 4533355..4538205 Escherichia coli APEC O78 14484334 YP_007383533.1 CDS APECO78_21860 NC_020163.1 4538573 4540228 D COG1620 L-lactate permease; L-lactate permease 4538573..4540228 Escherichia coli APEC O78 14484335 YP_007383534.1 CDS APECO78_21865 NC_020163.1 4540228 4541004 D COG2186 Transcriptional regulators; putative L-lactate dehydrogenase operon regulatory protein 4540228..4541004 Escherichia coli APEC O78 14484336 YP_007383535.1 CDS lldD NC_020163.1 4541001 4542191 D COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; L-lactate dehydrogenase 4541001..4542191 Escherichia coli APEC O78 14484337 YP_007383536.1 CDS APECO78_21875 NC_020163.1 4542377 4542850 D COG0219 Predicted rRNA methylase (SpoU class); rRNA methylase 4542377..4542850 Escherichia coli APEC O78 14484338 YP_007383537.1 CDS APECO78_21880 NC_020163.1 4542903 4543724 R COG1045 Serine acetyltransferase; serine acetyltransferase complement(4542903..4543724) Escherichia coli APEC O78 14484339 YP_007383538.1 CDS APECO78_21885 NC_020163.1 4543804 4544823 R COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4543804..4544823) Escherichia coli APEC O78 14484340 YP_007383539.1 CDS APECO78_21890 NC_020163.1 4544823 4545290 R COG1952 Preprotein translocase subunit SecB; preprotein translocase subunit SecB complement(4544823..4545290) Escherichia coli APEC O78 14484341 YP_007383540.1 CDS APECO78_21895 NC_020163.1 4545353 4545604 R COG0695 Glutaredoxin and related proteins; glutaredoxin 3 complement(4545353..4545604) Escherichia coli APEC O78 14484342 YP_007383541.1 CDS APECO78_21900 NC_020163.1 4545746 4546177 R COG0607 Rhodanese-related sulfurtransferase; hypothetical protein complement(4545746..4546177) Escherichia coli APEC O78 14484343 YP_007383542.1 CDS APECO78_21905 NC_020163.1 4546422 4547966 D COG0696 Phosphoglyceromutase; phosphoglycerate mutase 4546422..4547966 Escherichia coli APEC O78 14484344 YP_007383543.1 CDS APECO78_21910 NC_020163.1 4547976 4549259 D COG4942 Membrane-bound metallopeptidase; AmiB activator 4547976..4549259 Escherichia coli APEC O78 14484345 YP_007383544.1 CDS APECO78_21915 NC_020163.1 4549263 4550222 D COG2861 Uncharacterized protein conserved in bacteria; hypothetical protein 4549263..4550222 Escherichia coli APEC O78 14484346 YP_007383545.1 CDS APECO78_21920 NC_020163.1 4550209 4551243 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase complement(4550209..4551243) Escherichia coli APEC O78 14484347 YP_007383546.1 CDS APECO78_21925 NC_020163.1 4551482 4552507 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-threonine 3-dehydrogenase complement(4551482..4552507) Escherichia coli APEC O78 14484348 YP_007383547.1 CDS APECO78_21930 NC_020163.1 4552517 4553713 R COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 2-amino-3-ketobutyrate coenzyme A ligase complement(4552517..4553713) Escherichia coli APEC O78 14484349 YP_007383548.1 CDS rfaD NC_020163.1 4553927 4554859 D COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-L-glycero-D-mannoheptose-6-epimerase 4553927..4554859 Escherichia coli APEC O78 14484350 YP_007383549.1 CDS APECO78_21940 NC_020163.1 4554869 4555915 D COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose:LPS heptosyltransferase II 4554869..4555915 Escherichia coli APEC O78 14484351 YP_007383550.1 CDS APECO78_21945 NC_020163.1 4555919 4556890 D COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose:LPS heptosyl transferase I 4555919..4556890 Escherichia coli APEC O78 14484352 YP_007383551.1 CDS APECO78_21950 NC_020163.1 4556960 4558213 R COG3307 Lipid A core - O-antigen ligase and related enzymes; O-antigen ligase complement(4556960..4558213) Escherichia coli APEC O78 14484353 YP_007383552.1 CDS APECO78_21955 NC_020163.1 4558259 4559242 R COG0463 Glycosyltransferases involved in cell wall biogenesis; putative beta1,3-glucosyltransferase complement(4558259..4559242) Escherichia coli APEC O78 14484354 YP_007383553.1 CDS APECO78_21960 NC_020163.1 4559327 4560352 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase complement(4559327..4560352) Escherichia coli APEC O78 14484355 YP_007383554.1 CDS APECO78_21965 NC_020163.1 4560378 4561070 R COG0661 Predicted unusual protein kinase; lipopolysaccharide core biosynthesis protein complement(4560378..4561070) Escherichia coli APEC O78 14484356 YP_007383555.1 CDS APECO78_21970 NC_020163.1 4561080 4562075 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide 1,2-glucosyltransferase complement(4561080..4562075) Escherichia coli APEC O78 14484357 YP_007383556.1 CDS APECO78_21975 NC_020163.1 4562092 4563108 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1, 3-D-galactosyltransferase complement(4562092..4563108) Escherichia coli APEC O78 14484358 YP_007383557.1 CDS APECO78_21980 NC_020163.1 4563124 4563921 R COG0515 Serine/threonine protein kinase; lipopolysaccharide core heptose(I) kinase RfaP complement(4563124..4563921) Escherichia coli APEC O78 14484359 YP_007383558.1 CDS APECO78_21985 NC_020163.1 4563914 4565038 R COG0438 Glycosyltransferase; glucosyltransferase I RfaG complement(4563914..4565038) Escherichia coli APEC O78 14484360 YP_007383559.1 CDS APECO78_21990 NC_020163.1 4565035 4566093 R COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide core heptosyltransferase RfaQ complement(4565035..4566093) Escherichia coli APEC O78 14484361 YP_007383560.1 CDS APECO78_21995 NC_020163.1 4566506 4567783 D COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase 4566506..4567783 Escherichia coli APEC O78 14484362 YP_007383561.1 CDS APECO78_22000 NC_020163.1 4567791 4568270 D COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 4567791..4568270 Escherichia coli APEC O78 14484363 YP_007383562.1 CDS APECO78_22005 NC_020163.1 4568309 4569118 R COG0266 Formamidopyrimidine-DNA glycosylase; formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase complement(4568309..4569118) Escherichia coli APEC O78 14484364 YP_007383563.1 CDS APECO78_22010 NC_020163.1 4569216 4569383 R COG0267 Ribosomal protein L33; 50S ribosomal protein L33 complement(4569216..4569383) Escherichia coli APEC O78 14484365 YP_007383564.1 CDS APECO78_22015 NC_020163.1 4569404 4569640 R COG0227 Ribosomal protein L28; 50S ribosomal protein L28 complement(4569404..4569640) Escherichia coli APEC O78 14484366 YP_007383565.1 CDS APECO78_22020 NC_020163.1 4569857 4570525 R COG2003 DNA repair proteins; hypothetical protein complement(4569857..4570525) Escherichia coli APEC O78 14484367 YP_007383566.1 CDS APECO78_22025 NC_020163.1 4570697 4571917 D COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 4570697..4571917 Escherichia coli APEC O78 14484368 YP_007383567.1 CDS dut NC_020163.1 4571898 4572353 D COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase 4571898..4572353 Escherichia coli APEC O78 14484369 YP_007383568.1 CDS APECO78_22035 NC_020163.1 4572460 4573056 D COG1309 Transcriptional regulator; division inhibitor protein 4572460..4573056 Escherichia coli APEC O78 14484370 YP_007383569.1 CDS APECO78_22040 NC_020163.1 4573102 4574061 R COG3344 Retron-type reverse transcriptase; putative RNA-directed DNA polymerase complement(4573102..4574061) Escherichia coli APEC O78 14484371 YP_007383570.1 CDS APECO78_22045 NC_020163.1 4574359 4575000 R COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase complement(4574359..4575000) Escherichia coli APEC O78 14484372 YP_007383571.1 CDS APECO78_22050 NC_020163.1 4575065 4575781 R COG0689 RNase PH; ribonuclease PH complement(4575065..4575781) Escherichia coli APEC O78 14484373 YP_007383572.1 CDS APECO78_22055 NC_020163.1 4575908 4576771 D COG1561 Uncharacterized stress-induced protein; hypothetical protein 4575908..4576771 Escherichia coli APEC O78 14484374 YP_007383573.1 CDS APECO78_22060 NC_020163.1 4576992 4577594 D DNA-damage-inducible protein D 4576992..4577594 Escherichia coli APEC O78 14484375 YP_007383574.1 CDS APECO78_22065 NC_020163.1 4577885 4578502 D COG2860 Predicted membrane protein; hypothetical protein 4577885..4578502 Escherichia coli APEC O78 14484376 YP_007383575.1 CDS APECO78_22070 NC_020163.1 4578499 4580016 R COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigB complement(4578499..4580016) Escherichia coli APEC O78 14484377 YP_007383576.1 CDS APECO78_22075 NC_020163.1 4580038 4580301 R hypothetical protein complement(4580038..4580301) Escherichia coli APEC O78 14484378 YP_007383577.1 CDS APECO78_22080 NC_020163.1 4580435 4581058 D COG0194 Guanylate kinase; guanylate kinase 4580435..4581058 Escherichia coli APEC O78 14484379 YP_007383578.1 CDS APECO78_22085 NC_020163.1 4581113 4581388 D COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega 4581113..4581388 Escherichia coli APEC O78 14484380 YP_007383579.1 CDS APECO78_22090 NC_020163.1 4581407 4583515 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4581407..4583515 Escherichia coli APEC O78 14484381 YP_007383580.1 CDS APECO78_22095 NC_020163.1 4583522 4584211 D COG0566 rRNA methylases; tRNA guanosine-2'-O-methyltransferase 4583522..4584211 Escherichia coli APEC O78 14484382 YP_007383581.1 CDS APECO78_22100 NC_020163.1 4584217 4586298 D COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG 4584217..4586298 Escherichia coli APEC O78 14484383 YP_007383582.1 CDS APECO78_22105 NC_020163.1 4586283 4587149 R hypothetical protein complement(4586283..4587149) Escherichia coli APEC O78 14484384 YP_007383583.1 CDS APECO78_22110 NC_020163.1 4587152 4588357 R COG0786 Na+/glutamate symporter; sodium/glutamate symport carrier protein GltS complement(4587152..4588357) Escherichia coli APEC O78 14484385 YP_007383584.1 CDS APECO78_22115 NC_020163.1 4588637 4590028 D COG2233 Xanthine/uracil permeases; putative purine permease yicE 4588637..4590028 Escherichia coli APEC O78 14484386 YP_007383585.1 CDS APECO78_22120 NC_020163.1 4590149 4591858 D hypothetical protein 4590149..4591858 Escherichia coli APEC O78 14484387 YP_007383586.1 CDS APECO78_22125 NC_020163.1 4591910 4594228 R COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase complement(4591910..4594228) Escherichia coli APEC O78 14484388 YP_007383587.1 CDS APECO78_22130 NC_020163.1 4594238 4595620 R COG2211 Na+/melibiose symporter and related transporters; transporter complement(4594238..4595620) Escherichia coli APEC O78 14484389 YP_007383588.1 CDS APECO78_22135 NC_020163.1 4596116 4596256 D COG3943 Virulence protein; hypothetical protein 4596116..4596256 Escherichia coli APEC O78 14484657 YP_007383589.1 CDS APECO78_22140 NC_020163.1 4596644 4597828 D COG0477 Permeases of the major facilitator superfamily; sugar efflux transporter C 4596644..4597828 Escherichia coli APEC O78 14484391 YP_007383590.1 CDS APECO78_22145 NC_020163.1 4597939 4598862 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative transport protein YicL 4597939..4598862 Escherichia coli APEC O78 14484392 YP_007383591.1 CDS APECO78_22150 NC_020163.1 4598866 4599684 R COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; cytoplasmic membrane lipoprotein-28 complement(4598866..4599684) Escherichia coli APEC O78 14484393 YP_007383592.1 CDS APECO78_22155 NC_020163.1 4599906 4600199 D hypothetical protein 4599906..4600199 Escherichia coli APEC O78 14484394 YP_007383593.1 CDS nepI NC_020163.1 4600240 4601430 R COG2814 Arabinose efflux permease; ribonucleoside transporter complement(4600240..4601430) Escherichia coli APEC O78 14484395 YP_007383594.1 CDS APECO78_22165 NC_020163.1 4601641 4602093 R COG0442 Prolyl-tRNA synthetase; hypothetical protein complement(4601641..4602093) Escherichia coli APEC O78 14484396 YP_007383595.1 CDS APECO78_22170 NC_020163.1 4602146 4603480 R COG2252 Permeases; putative adenine permease complement(4602146..4603480) Escherichia coli APEC O78 14484397 YP_007383596.1 CDS APECO78_22175 NC_020163.1 4603655 4605421 D COG1001 Adenine deaminase; cryptic adenine deaminase 4603655..4605421 Escherichia coli APEC O78 14484398 YP_007383597.1 CDS APECO78_22180 NC_020163.1 4605466 4606857 R COG2271 Sugar phosphate permease; sugar phosphate antiporter complement(4605466..4606857) Escherichia coli APEC O78 14484399 YP_007383598.1 CDS APECO78_22185 NC_020163.1 4606995 4608314 R COG2271 Sugar phosphate permease; regulatory protein UhpC complement(4606995..4608314) Escherichia coli APEC O78 14484400 YP_007383599.1 CDS APECO78_22190 NC_020163.1 4608324 4609826 R COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific; sensory histidine kinase UhpB complement(4608324..4609826) Escherichia coli APEC O78 14484401 YP_007383600.1 CDS APECO78_22195 NC_020163.1 4609826 4610416 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator UhpA complement(4609826..4610416) Escherichia coli APEC O78 14484402 YP_007383601.1 CDS APECO78_22200 NC_020163.1 4610387 4610497 D hypothetical protein 4610387..4610497 Escherichia coli APEC O78 14484403 YP_007383602.1 CDS APECO78_22205 NC_020163.1 4610491 4610781 R COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 1 regulatory subunit complement(4610491..4610781) Escherichia coli APEC O78 14484404 YP_007383603.1 CDS APECO78_22210 NC_020163.1 4610785 4612473 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase catalytic subunit complement(4610785..4612473) Escherichia coli APEC O78 14484405 YP_007383604.1 CDS APECO78_22215 NC_020163.1 4612472 4612954 D hypothetical protein 4612472..4612954 Escherichia coli APEC O78 14484406 YP_007383605.1 CDS APECO78_22220 NC_020163.1 4613242 4613331 D toxic peptide TisB 4613242..4613331 Escherichia coli APEC O78 14484407 YP_007383606.1 CDS APECO78_22225 NC_020163.1 4613750 4614934 D COG0477 Permeases of the major facilitator superfamily; Multidrug resistance protein D 4613750..4614934 Escherichia coli APEC O78 14484408 YP_007383607.1 CDS APECO78_22230 NC_020163.1 4614942 4615439 R COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); transcriptional regulator complement(4614942..4615439) Escherichia coli APEC O78 14484409 YP_007383608.1 CDS APECO78_22235 NC_020163.1 4615436 4615798 R hypothetical protein complement(4615436..4615798) Escherichia coli APEC O78 14484410 YP_007383609.1 CDS APECO78_22240 NC_020163.1 4615788 4616135 R COG2149 Predicted membrane protein; inner membrane protein complement(4615788..4616135) Escherichia coli APEC O78 14484411 YP_007383610.1 CDS APECO78_22245 NC_020163.1 4616245 4616694 D inner membrane protein 4616245..4616694 Escherichia coli APEC O78 14484412 YP_007383611.1 CDS APECO78_22250 NC_020163.1 4616741 4618234 R COG3119 Arylsulfatase A and related enzymes; sulfatase/phosphatase complement(4616741..4618234) Escherichia coli APEC O78 14484413 YP_007383612.1 CDS APECO78_22255 NC_020163.1 4618231 4619946 R COG4146 Predicted symporter; transporter complement(4618231..4619946) Escherichia coli APEC O78 14484414 YP_007383613.1 CDS APECO78_22260 NC_020163.1 4620083 4621006 D COG2207 AraC-type DNA-binding domain-containing proteins; putative DNA-binding transcriptional regulator 4620083..4621006 Escherichia coli APEC O78 14484415 YP_007383614.1 CDS APECO78_22265 NC_020163.1 4621105 4621179 R 6-phospho-alpha-glucosidase complement(4621105..4621179) Escherichia coli APEC O78 14484416 YP_007383615.1 CDS APECO78_22270 NC_020163.1 4621179 4621817 R COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; putative 6-phospho-beta-glucosidase, NAD(P)-binding protein complement(4621179..4621817) Escherichia coli APEC O78 14484417 YP_007383616.1 CDS APECO78_22275 NC_020163.1 4621817 4623433 R COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system alpha-glucoside-specific transporter subunit IICB complement(4621817..4623433) Escherichia coli APEC O78 14484418 YP_007383617.1 CDS APECO78_22280 NC_020163.1 4623728 4624444 D COG2188 Transcriptional regulators; DNA-binding transcriptional regulator 4623728..4624444 Escherichia coli APEC O78 14484419 YP_007383618.1 CDS APECO78_22285 NC_020163.1 4624441 4626102 R COG2985 Predicted permease; transporter complement(4624441..4626102) Escherichia coli APEC O78 14484420 YP_007383619.1 CDS APECO78_22290 NC_020163.1 4626299 4626727 R COG0071 Molecular chaperone (small heat shock protein); small heat shock protein B complement(4626299..4626727) Escherichia coli APEC O78 14484421 YP_007383620.1 CDS APECO78_22295 NC_020163.1 4626839 4627252 R COG0071 Molecular chaperone (small heat shock protein); small heat shock protein A complement(4626839..4627252) Escherichia coli APEC O78 14484422 YP_007383621.1 CDS APECO78_22300 NC_020163.1 4627558 4627890 D COG5645 Predicted periplasmic lipoprotein; hypothetical protein 4627558..4627890 Escherichia coli APEC O78 14484423 YP_007383622.1 CDS APECO78_22305 NC_020163.1 4627892 4629106 R COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; hypothetical protein complement(4627892..4629106) Escherichia coli APEC O78 14484424 YP_007383623.1 CDS APECO78_22310 NC_020163.1 4629207 4630271 D COG0644 Dehydrogenases (flavoproteins); putative oxidoreductase 4629207..4630271 Escherichia coli APEC O78 14484425 YP_007383624.1 CDS APECO78_22315 NC_020163.1 4630268 4631560 R COG0477 Permeases of the major facilitator superfamily; D-galactonate transporter DgoT complement(4630268..4631560) Escherichia coli APEC O78 14484426 YP_007383625.1 CDS APECO78_22320 NC_020163.1 4631680 4632828 R COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; galactonate dehydratase complement(4631680..4632828) Escherichia coli APEC O78 14484427 YP_007383626.1 CDS APECO78_22325 NC_020163.1 4632825 4633442 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4632825..4633442) Escherichia coli APEC O78 14484428 YP_007383627.1 CDS APECO78_22330 NC_020163.1 4633426 4634304 R COG3734 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase complement(4633426..4634304) Escherichia coli APEC O78 14484429 YP_007383628.1 CDS APECO78_22335 NC_020163.1 4634301 4634990 R COG2186 Transcriptional regulators; DNA-binding transcriptional regulator complement(4634301..4634990) Escherichia coli APEC O78 14484430 YP_007383629.1 CDS APECO78_22340 NC_020163.1 4635268 4635924 D hypothetical protein 4635268..4635924 Escherichia coli APEC O78 14484431 YP_007383630.1 CDS APECO78_22345 NC_020163.1 4635970 4636782 R COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphate phosphatase complement(4635970..4636782) Escherichia coli APEC O78 14484432 YP_007383631.1 CDS APECO78_22350 NC_020163.1 4636897 4637295 R COG3753 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4636897..4637295) Escherichia coli APEC O78 14484433 YP_007383632.1 CDS APECO78_22355 NC_020163.1 4637315 4637515 R hypothetical protein complement(4637315..4637515) Escherichia coli APEC O78 14484434 YP_007383633.1 CDS APECO78_22360 NC_020163.1 4637535 4639949 R COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B complement(4637535..4639949) Escherichia coli APEC O78 14484435 YP_007383634.1 CDS APECO78_22365 NC_020163.1 4639978 4641051 R COG1195 Recombinational DNA repair ATPase (RecF pathway); recombination protein F complement(4639978..4641051) Escherichia coli APEC O78 14484436 YP_007383635.1 CDS APECO78_22370 NC_020163.1 4641051 4642151 R COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta complement(4641051..4642151) Escherichia coli APEC O78 14484437 YP_007383636.1 CDS APECO78_22375 NC_020163.1 4642156 4643559 R COG0593 ATPase involved in DNA replication initiation; DNA replication initiation factor complement(4642156..4643559) Escherichia coli APEC O78 14484438 YP_007383637.1 CDS APECO78_22380 NC_020163.1 4644166 4644306 D COG0230 Ribosomal protein L34; 50S ribosomal protein L34 4644166..4644306 Escherichia coli APEC O78 14484439 YP_007383638.1 CDS APECO78_22385 NC_020163.1 4644323 4644682 D COG0594 RNase P protein component; ribonuclease P 4644323..4644682 Escherichia coli APEC O78 14484440 YP_007383639.1 CDS APECO78_22390 NC_020163.1 4644646 4644903 D COG0759 Uncharacterized conserved protein; hypothetical protein 4644646..4644903 Escherichia coli APEC O78 14484441 YP_007383640.1 CDS APECO78_22395 NC_020163.1 4644906 4646552 D COG0706 Preprotein translocase subunit YidC; membrane protein insertase 4644906..4646552 Escherichia coli APEC O78 14484442 YP_007383641.1 CDS trmE NC_020163.1 4646658 4648022 D COG0486 Predicted GTPase; tRNA modification GTPase TrmE 4646658..4648022 Escherichia coli APEC O78 14484443 YP_007383642.1 CDS APECO78_22405 NC_020163.1 4648241 4648339 D tryptophanase leader peptide 4648241..4648339 Escherichia coli APEC O78 14484444 YP_007383643.1 CDS APECO78_22410 NC_020163.1 4648560 4649975 D COG3033 Tryptophanase; tryptophanase/L-cysteine desulfhydrase, PLP-dependent 4648560..4649975 Escherichia coli APEC O78 14484445 YP_007383644.1 CDS APECO78_22415 NC_020163.1 4650066 4651313 D COG0814 Amino acid permeases; tryptophan permease TnaB 4650066..4651313 Escherichia coli APEC O78 14484446 YP_007383645.1 CDS APECO78_22420 NC_020163.1 4651446 4652621 D COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtL 4651446..4652621 Escherichia coli APEC O78 14484447 YP_007383646.1 CDS APECO78_22425 NC_020163.1 4652596 4653555 D COG0583 Transcriptional regulator; DNA-binding transcriptional regulator YidZ 4652596..4653555 Escherichia coli APEC O78 14484448 YP_007383647.1 CDS APECO78_22430 NC_020163.1 4653712 4654461 D COG2091 Phosphopantetheinyl transferase; hypothetical protein 4653712..4654461 Escherichia coli APEC O78 14484449 YP_007383648.1 CDS APECO78_22435 NC_020163.1 4654483 4655049 D COG0431 Predicted flavoprotein; hypothetical protein 4654483..4655049 Escherichia coli APEC O78 14484450 YP_007383649.1 CDS APECO78_22440 NC_020163.1 4655103 4656440 R COG2252 Permeases; hypothetical protein complement(4655103..4656440) Escherichia coli APEC O78 14484451 YP_007383650.1 CDS APECO78_22445 NC_020163.1 4656607 4657272 D COG0637 Predicted phosphatase/phosphohexomutase; 6-phosphogluconate phosphatase 4656607..4657272 Escherichia coli APEC O78 14484452 YP_007383651.1 CDS APECO78_22450 NC_020163.1 4657339 4657812 D hypothetical protein 4657339..4657812 Escherichia coli APEC O78 14484453 YP_007383652.1 CDS APECO78_22455 NC_020163.1 4657861 4658448 D COG3196 Uncharacterized protein conserved in bacteria; hypothetical protein 4657861..4658448 Escherichia coli APEC O78 14484454 YP_007383653.1 CDS APECO78_22460 NC_020163.1 4658510 4659232 R COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; putative 6-phosphogluconolactonase complement(4658510..4659232) Escherichia coli APEC O78 14484455 YP_007383654.1 CDS APECO78_22465 NC_020163.1 4659247 4660416 R COG2382 Enterochelin esterase and related enzymes; xylanase complement(4659247..4660416) Escherichia coli APEC O78 14484456 YP_007383655.1 CDS APECO78_22470 NC_020163.1 4660443 4662059 R COG4580 Maltoporin (phage lambda and maltose receptor); carbohydrate-specific outer membrane porin, cryptic complement(4660443..4662059) Escherichia coli APEC O78 14484457 YP_007383656.1 CDS APECO78_22475 NC_020163.1 4662145 4663539 R COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; cryptic phospho-beta-glucosidase B complement(4662145..4663539) Escherichia coli APEC O78 14484458 YP_007383657.1 CDS APECO78_22480 NC_020163.1 4663558 4665435 R COG1264 Phosphotransferase system IIB components; PTS system beta-glucoside-specific transporter subunits IIABC complement(4663558..4665435) Escherichia coli APEC O78 14484459 YP_007383658.1 CDS APECO78_22485 NC_020163.1 4665567 4666403 R COG3711 Transcriptional antiterminator; transcriptional antiterminator BglG complement(4665567..4666403) Escherichia coli APEC O78 14484460 YP_007383659.1 CDS APECO78_22490 NC_020163.1 4666689 4667414 R COG0704 Phosphate uptake regulator; transcriptional regulator PhoU complement(4666689..4667414) Escherichia coli APEC O78 14484461 YP_007383660.1 CDS APECO78_22495 NC_020163.1 4667429 4668202 R COG1117 ABC-type phosphate transport system, ATPase component; phosphate transporter ATP-binding protein complement(4667429..4668202) Escherichia coli APEC O78 14484462 YP_007383661.1 CDS pstA NC_020163.1 4668293 4669183 R COG0581 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PtsA complement(4668293..4669183) Escherichia coli APEC O78 14484463 YP_007383662.1 CDS APECO78_22505 NC_020163.1 4669183 4670142 R COG0573 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PstC complement(4669183..4670142) Escherichia coli APEC O78 14484464 YP_007383663.1 CDS APECO78_22510 NC_020163.1 4670229 4671269 R COG0226 ABC-type phosphate transport system, periplasmic component; phosphate ABC transporter substrate-binding protein complement(4670229..4671269) Escherichia coli APEC O78 14484465 YP_007383664.1 CDS APECO78_22515 NC_020163.1 4671517 4672590 R putative fimbrial protein LpfD; putative adhesin complement(4671517..4672590) Escherichia coli APEC O78 14484466 YP_007383665.1 CDS APECO78_22520 NC_020163.1 4672601 4675123 R COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein complement(4672601..4675123) Escherichia coli APEC O78 14484467 YP_007383666.1 CDS lfpB NC_020163.1 4675148 4675879 R COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein complement(4675148..4675879) Escherichia coli APEC O78 14484468 YP_007383667.1 CDS lpfA NC_020163.1 4675927 4676499 R COG3539 P pilus assembly protein, pilin FimA; fimbrial protein complement(4675927..4676499) Escherichia coli APEC O78 14484469 YP_007383668.1 CDS APECO78_22535 NC_020163.1 4676801 4678630 R COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase complement(4676801..4678630) Escherichia coli APEC O78 14484470 YP_007383669.1 CDS APECO78_22540 NC_020163.1 4678792 4680162 R COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4678792..4680162) Escherichia coli APEC O78 14484471 YP_007383670.1 CDS APECO78_22545 NC_020163.1 4680513 4680932 R COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon complement(4680513..4680932) Escherichia coli APEC O78 14484472 YP_007383671.1 CDS APECO78_22550 NC_020163.1 4680953 4682335 R COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta complement(4680953..4682335) Escherichia coli APEC O78 14484473 YP_007383672.1 CDS APECO78_22555 NC_020163.1 4682362 4683225 R COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma complement(4682362..4683225) Escherichia coli APEC O78 14484474 YP_007383673.1 CDS APECO78_22560 NC_020163.1 4683276 4684817 R COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha complement(4683276..4684817) Escherichia coli APEC O78 14484475 YP_007383674.1 CDS APECO78_22565 NC_020163.1 4684830 4685363 R COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); F0F1 ATP synthase subunit delta complement(4684830..4685363) Escherichia coli APEC O78 14484476 YP_007383675.1 CDS APECO78_22570 NC_020163.1 4685378 4685848 R COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B complement(4685378..4685848) Escherichia coli APEC O78 14484477 YP_007383676.1 CDS APECO78_22575 NC_020163.1 4685910 4686149 R COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; F0F1 ATP synthase subunit C complement(4685910..4686149) Escherichia coli APEC O78 14484478 YP_007383677.1 CDS APECO78_22580 NC_020163.1 4686196 4687011 R COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A complement(4686196..4687011) Escherichia coli APEC O78 14484479 YP_007383678.1 CDS APECO78_22585 NC_020163.1 4687020 4687400 R F0F1 ATP synthase subunit I complement(4687020..4687400) Escherichia coli APEC O78 14484480 YP_007383679.1 CDS APECO78_22590 NC_020163.1 4688017 4688640 R COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB complement(4688017..4688640) Escherichia coli APEC O78 14484481 YP_007383680.1 CDS APECO78_22595 NC_020163.1 4688704 4690593 R COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(4688704..4690593) Escherichia coli APEC O78 14484482 YP_007383681.1 CDS APECO78_22600 NC_020163.1 4690972 4691415 R COG0716 Flavodoxins; flavodoxin complement(4690972..4691415) Escherichia coli APEC O78 14484483 YP_007383682.1 CDS APECO78_22605 NC_020163.1 4691505 4691963 R COG1522 Transcriptional regulators; hypothetical protein complement(4691505..4691963) Escherichia coli APEC O78 14484484 YP_007383683.1 CDS APECO78_22610 NC_020163.1 4692115 4693107 D COG2502 Asparagine synthetase A; asparagine synthetase AsnA 4692115..4693107 Escherichia coli APEC O78 14484485 YP_007383684.1 CDS APECO78_22615 NC_020163.1 4693112 4694563 R COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; hypothetical protein complement(4693112..4694563) Escherichia coli APEC O78 14484486 YP_007383685.1 CDS APECO78_22620 NC_020163.1 4694557 4696053 R COG0714 MoxR-like ATPases; regulatory ATPase RavA complement(4694557..4696053) Escherichia coli APEC O78 14484487 YP_007383686.1 CDS APECO78_22625 NC_020163.1 4696276 4698144 D COG3158 K+ transporter; potassium transport protein Kup 4696276..4698144 Escherichia coli APEC O78 14484488 YP_007383687.1 CDS APECO78_22630 NC_020163.1 4698311 4698730 D COG1869 ABC-type ribose transport system, auxiliary component; D-ribose pyranase 4698311..4698730 Escherichia coli APEC O78 14484489 YP_007383688.1 CDS APECO78_22635 NC_020163.1 4698738 4700243 D COG1129 ABC-type sugar transport system, ATPase component; D-ribose ABC transporter ATP-binding protein 4698738..4700243 Escherichia coli APEC O78 14484490 YP_007383689.1 CDS APECO78_22640 NC_020163.1 4700248 4701213 D COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; ribose ABC transporter permease 4700248..4701213 Escherichia coli APEC O78 14484491 YP_007383690.1 CDS APECO78_22645 NC_020163.1 4701238 4702128 D COG1879 ABC-type sugar transport system, periplasmic component; D-ribose transporter subunit RbsB 4701238..4702128 Escherichia coli APEC O78 14484492 YP_007383691.1 CDS APECO78_22650 NC_020163.1 4702254 4703183 D COG0524 Sugar kinases, ribokinase family; ribokinase 4702254..4703183 Escherichia coli APEC O78 14484493 YP_007383692.1 CDS APECO78_22655 NC_020163.1 4703187 4704179 D COG1609 Transcriptional regulators; transcriptional repressor RbsR 4703187..4704179 Escherichia coli APEC O78 14484494 YP_007383693.1 CDS APECO78_22660 NC_020163.1 4704145 4705572 R COG0477 Permeases of the major facilitator superfamily; multidrug or homocysteine efflux system complement(4704145..4705572) Escherichia coli APEC O78 14484495 YP_007383694.1 CDS APECO78_22665 NC_020163.1 4705595 4706287 R COG2186 Transcriptional regulators; GntR family transcriptional regulator complement(4705595..4706287) Escherichia coli APEC O78 14484496 YP_007383695.1 CDS APECO78_22670 NC_020163.1 4712183 4713022 R COG0583 Transcriptional regulator; transcriptional regulator HdfR complement(4712183..4713022) Escherichia coli APEC O78 14484661 YP_007383696.1 CDS APECO78_22675 NC_020163.1 4713141 4713479 D COG3085 Uncharacterized protein conserved in bacteria; hypothetical protein 4713141..4713479 Escherichia coli APEC O78 14484498 YP_007383697.1 CDS APECO78_22680 NC_020163.1 4713504 4715024 R COG0606 Predicted ATPase with chaperone activity; ATP-dependent protease complement(4713504..4715024) Escherichia coli APEC O78 14484499 YP_007383698.1 CDS APECO78_22685 NC_020163.1 4715615 4717261 D COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 2 catalytic subunit 4715615..4717261 Escherichia coli APEC O78 14484500 YP_007383699.1 CDS APECO78_22690 NC_020163.1 4717258 4717521 D COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit; acetolactate synthase 2 regulatory subunit 4717258..4717521 Escherichia coli APEC O78 14484501 YP_007383700.1 CDS APECO78_22695 NC_020163.1 4717541 4718470 D COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase 4717541..4718470 Escherichia coli APEC O78 14484502 YP_007383701.1 CDS APECO78_22700 NC_020163.1 4718535 4720385 D COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dihydroxy-acid dehydratase 4718535..4720385 Escherichia coli APEC O78 14484503 YP_007383702.1 CDS APECO78_22705 NC_020163.1 4720388 4721932 D COG1171 Threonine dehydratase; threonine dehydratase 4720388..4721932 Escherichia coli APEC O78 14484504 YP_007383703.1 CDS APECO78_22710 NC_020163.1 4721929 4722819 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator IlvY complement(4721929..4722819) Escherichia coli APEC O78 14484505 YP_007383704.1 CDS APECO78_22715 NC_020163.1 4722969 4724444 D COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 4722969..4724444 Escherichia coli APEC O78 14484506 YP_007383705.1 CDS APECO78_22720 NC_020163.1 4724531 4724812 R COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase C complement(4724531..4724812) Escherichia coli APEC O78 14484507 YP_007383706.1 CDS APECO78_22725 NC_020163.1 4725011 4725460 R COG3692 Uncharacterized protein conserved in bacteria; hypothetical protein complement(4725011..4725460) Escherichia coli APEC O78 14484508 YP_007383707.1 CDS APECO78_22730 NC_020163.1 4725677 4727698 D COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase Rep 4725677..4727698 Escherichia coli APEC O78 14484509 YP_007383708.1 CDS APECO78_22735 NC_020163.1 4727745 4729229 R COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase complement(4727745..4729229) Escherichia coli APEC O78 14484510 YP_007383709.1 CDS APECO78_22740 NC_020163.1 4729363 4730628 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlB complement(4729363..4730628) Escherichia coli APEC O78 14484511 YP_007383710.1 CDS trxA NC_020163.1 4730759 4731088 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 4730759..4731088 Escherichia coli APEC O78 14484512 YP_007383711.1 CDS APECO78_22750 NC_020163.1 4731229 4731330 D rho operon leader peptide 4731229..4731330 Escherichia coli APEC O78 14484513 YP_007383712.1 CDS rho NC_020163.1 4731415 4732674 D COG1158 Transcription termination factor; transcription termination factor Rho 4731415..4732674 Escherichia coli APEC O78 14484514 YP_007383713.1 CDS APECO78_22760 NC_020163.1 4732684 4732902 D hypothetical protein 4732684..4732902 Escherichia coli APEC O78 14484515 YP_007383714.1 CDS APECO78_22765 NC_020163.1 4732914 4734017 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4732914..4734017 Escherichia coli APEC O78 14484516 YP_007383715.1 CDS APECO78_22770 NC_020163.1 4734029 4735075 D COG3765 Chain length determinant protein; lipopolysaccharide biosynthesis protein WzzE 4734029..4735075 Escherichia coli APEC O78 14484517 YP_007383716.1 CDS APECO78_22775 NC_020163.1 4735131 4736261 D COG0381 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetyl glucosamine-2-epimerase 4735131..4736261 Escherichia coli APEC O78 14484518 YP_007383717.1 CDS APECO78_22780 NC_020163.1 4736258 4737520 D COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; UDP-N-acetyl-D-mannosamine dehydrogenase 4736258..4737520 Escherichia coli APEC O78 14484519 YP_007383718.1 CDS APECO78_22785 NC_020163.1 4737520 4738587 D COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4737520..4738587 Escherichia coli APEC O78 14484520 YP_007383719.1 CDS APECO78_22790 NC_020163.1 4738606 4739487 D COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase 4738606..4739487 Escherichia coli APEC O78 14484521 YP_007383720.1 CDS APECO78_22795 NC_020163.1 4739465 4740139 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; TDP-fucosamine acetyltransferase 4739465..4740139 Escherichia coli APEC O78 14484522 YP_007383721.1 CDS APECO78_22800 NC_020163.1 4740144 4741274 D COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4740144..4741274 Escherichia coli APEC O78 14484523 YP_007383722.1 CDS APECO78_22805 NC_020163.1 4741276 4742526 D COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; O-antigen translocase 4741276..4742526 Escherichia coli APEC O78 14484524 YP_007383723.1 CDS APECO78_22810 NC_020163.1 4742523 4743602 D 4-alpha-L-fucosyltransferase 4742523..4743602 Escherichia coli APEC O78 14484525 YP_007383724.1 CDS APECO78_22815 NC_020163.1 4743599 4744951 D common antigen polymerase 4743599..4744951 Escherichia coli APEC O78 14484526 YP_007383725.1 CDS APECO78_22820 NC_020163.1 4744954 4745694 D COG1922 Teichoic acid biosynthesis proteins; UDP-N-acetyl-D-mannosaminuronic acid transferase 4744954..4745694 Escherichia coli APEC O78 14484527 YP_007383726.1 CDS APECO78_22825 NC_020163.1 4745885 4747270 D COG1113 Gamma-aminobutyrate permease and related permeases; transport protein YifK 4745885..4747270 Escherichia coli APEC O78 14484528 YP_007383727.1 CDS APECO78_22830 NC_020163.1 4747956 4749191 D COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); arylsulfatase regulator 4747956..4749191 Escherichia coli APEC O78 14484665 YP_007383728.1 CDS APECO78_22835 NC_020163.1 4749275 4749436 R hypothetical protein complement(4749275..4749436) Escherichia coli APEC O78 14484530 YP_007383729.1 CDS APECO78_22840 NC_020163.1 4750115 4751311 R COG3071 Uncharacterized enzyme of heme biosynthesis; putative protoheme IX biogenesis protein complement(4750115..4751311) Escherichia coli APEC O78 14484531 YP_007383730.1 CDS APECO78_22845 NC_020163.1 4751314 4752519 R COG2959 Uncharacterized enzyme of heme biosynthesis; uroporphyrinogen III C-methyltransferase complement(4751314..4752519) Escherichia coli APEC O78 14484532 YP_007383731.1 CDS hemD NC_020163.1 4752541 4753281 R COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase complement(4752541..4753281) Escherichia coli APEC O78 14484533 YP_007383732.1 CDS hemC NC_020163.1 4753278 4754219 R COG0181 Porphobilinogen deaminase; porphobilinogen deaminase complement(4753278..4754219) Escherichia coli APEC O78 14484534 YP_007383733.1 CDS cyaA NC_020163.1 4754606 4757152 D COG3072 Adenylate cyclase; adenylate cyclase 4754606..4757152 Escherichia coli APEC O78 14484535 YP_007383734.1 CDS cyaY NC_020163.1 4757192 4757512 R COG1965 Protein implicated in iron transport, frataxin homolog; frataxin-like protein complement(4757192..4757512) Escherichia coli APEC O78 14484536 YP_007383735.1 CDS APECO78_22870 NC_020163.1 4757627 4757788 D hypothetical protein 4757627..4757788 Escherichia coli APEC O78 14484537 YP_007383736.1 CDS APECO78_22875 NC_020163.1 4757975 4758178 D COG5567 Predicted small periplasmic lipoprotein; hypothetical protein 4757975..4758178 Escherichia coli APEC O78 14484538 YP_007383737.1 CDS APECO78_22880 NC_020163.1 4758215 4759039 D COG0253 Diaminopimelate epimerase; diaminopimelate epimerase 4758215..4759039 Escherichia coli APEC O78 14484539 YP_007383738.1 CDS APECO78_22885 NC_020163.1 4759036 4759743 D COG3159 Uncharacterized protein conserved in bacteria; hypothetical protein 4759036..4759743 Escherichia coli APEC O78 14484540 YP_007383739.1 CDS APECO78_22890 NC_020163.1 4759740 4760636 D COG4973 Site-specific recombinase XerC; site-specific tyrosine recombinase XerC 4759740..4760636 Escherichia coli APEC O78 14484541 YP_007383740.1 CDS APECO78_22895 NC_020163.1 4760636 4761352 D COG1011 Predicted hydrolase (HAD superfamily); flavin mononucleotide phosphatase 4760636..4761352 Escherichia coli APEC O78 14484542 YP_007383741.1 CDS APECO78_22900 NC_020163.1 4761436 4763598 D COG0210 Superfamily I DNA and RNA helicases; DNA-dependent helicase II 4761436..4763598 Escherichia coli APEC O78 14484543 YP_007383742.1 CDS APECO78_22905 NC_020163.1 4763745 4764509 R COG3698 Predicted periplasmic protein; hypothetical protein complement(4763745..4764509) Escherichia coli APEC O78 14484544 YP_007383743.1 CDS APECO78_22910 NC_020163.1 4764879 4765829 D COG0598 Mg2+ and Co2+ transporters; magnesium/nickel/cobalt transporter CorA 4764879..4765829 Escherichia coli APEC O78 14484545 YP_007383744.1 CDS APECO78_22915 NC_020163.1 4765872 4766252 R COG0342 Preprotein translocase subunit SecD; hypothetical protein complement(4765872..4766252) Escherichia coli APEC O78 14484546 YP_007383745.1 CDS APECO78_22920 NC_020163.1 4766266 4766646 R hypothetical protein complement(4766266..4766646) Escherichia coli APEC O78 14484547 YP_007383746.1 CDS APECO78_22925 NC_020163.1 4766741 4767631 R COG2962 Predicted permeases; putative chloramphenicol resistance permease complement(4766741..4767631) Escherichia coli APEC O78 14484548 YP_007383747.1 CDS APECO78_22930 NC_020163.1 4767683 4768150 R COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein complement(4767683..4768150) Escherichia coli APEC O78 14484549 YP_007383748.1 CDS APECO78_22935 NC_020163.1 4768315 4769184 D COG2829 Outer membrane phospholipase A; phospholipase A 4768315..4769184 Escherichia coli APEC O78 14484550 YP_007383749.1 CDS APECO78_22940 NC_020163.1 4769317 4771146 D COG0514 Superfamily II DNA helicase; ATP-dependent DNA helicase RecQ 4769317..4771146 Escherichia coli APEC O78 14484551 YP_007383750.1 CDS APECO78_22945 NC_020163.1 4771210 4771830 D COG1280 Putative threonine efflux protein; threonine efflux system 4771210..4771830 Escherichia coli APEC O78 14484552 YP_007383751.1 CDS APECO78_22950 NC_020163.1 4771892 4772512 R COG1280 Putative threonine efflux protein; homoserine/homoserine lactone efflux protein complement(4771892..4772512) Escherichia coli APEC O78 14484553 YP_007383752.1 CDS APECO78_22955 NC_020163.1 4772623 4773645 D COG2267 Lysophospholipase; lysophospholipase L2 4772623..4773645 Escherichia coli APEC O78 14484554 YP_007383753.1 CDS APECO78_22960 NC_020163.1 4773653 4774453 D COG0561 Predicted hydrolases of the HAD superfamily; hydrolase 4773653..4774453 Escherichia coli APEC O78 14484555 YP_007383754.1 CDS APECO78_22965 NC_020163.1 4774529 4775428 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; membrane protein YigM 4774529..4775428 Escherichia coli APEC O78 14484556 YP_007383755.1 CDS APECO78_22970 NC_020163.1 4775316 4776269 R COG0583 Transcriptional regulator; DNA-binding transcriptional regulator MetR complement(4775316..4776269) Escherichia coli APEC O78 14484557 YP_007383756.1 CDS APECO78_22975 NC_020163.1 4776387 4778648 D COG0620 Methionine synthase II (cobalamin-independent); 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 4776387..4778648 Escherichia coli APEC O78 14484558 YP_007383757.1 CDS APECO78_22980 NC_020163.1 4778687 4779502 R COG0412 Dienelactone hydrolase and related enzymes; putative dienelactone hydrolase-like enzyme complement(4778687..4779502) Escherichia coli APEC O78 14484559 YP_007383758.1 CDS APECO78_22985 NC_020163.1 4779764 4780525 D COG2820 Uridine phosphorylase; uridine phosphorylase 4779764..4780525 Escherichia coli APEC O78 14484560 YP_007383759.1 CDS APECO78_22990 NC_020163.1 4780666 4782093 D COG1322 Uncharacterized protein conserved in bacteria; DNA recombination protein RmuC 4780666..4782093 Escherichia coli APEC O78 14484561 YP_007383760.1 CDS ubiE NC_020163.1 4782188 4782943 D COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase 4782188..4782943 Escherichia coli APEC O78 14484562 YP_007383761.1 CDS APECO78_23000 NC_020163.1 4782957 4783562 D COG3165 Uncharacterized protein conserved in bacteria; hypothetical protein 4782957..4783562 Escherichia coli APEC O78 14484563 YP_007383762.1 CDS APECO78_23005 NC_020163.1 4783559 4785199 D COG0661 Predicted unusual protein kinase; ubiquinone biosynthesis protein UbiB 4783559..4785199 Escherichia coli APEC O78 14484564 YP_007383763.1 CDS tatA NC_020163.1 4785278 4785547 D COG1826 Sec-independent protein secretion pathway components; twin arginine translocase protein A 4785278..4785547 Escherichia coli APEC O78 14484565 YP_007383764.1 CDS APECO78_23015 NC_020163.1 4785551 4786066 D COG1826 Sec-independent protein secretion pathway components; sec-independent translocase 4785551..4786066 Escherichia coli APEC O78 14484566 YP_007383765.1 CDS APECO78_23020 NC_020163.1 4786069 4786845 D COG0805 Sec-independent protein secretion pathway component TatC; twin-arginine protein translocation system subunit TatC 4786069..4786845 Escherichia coli APEC O78 14484567 YP_007383766.1 CDS APECO78_23025 NC_020163.1 4786887 4787669 D COG0084 Mg-dependent DNase; DNase TatD 4786887..4787669 Escherichia coli APEC O78 14484568 YP_007383767.1 CDS APECO78_23030 NC_020163.1 4787666 4788154 R COG0250 Transcription antiterminator; transcriptional activator RfaH complement(4787666..4788154) Escherichia coli APEC O78 14484569 YP_007383768.1 CDS APECO78_23035 NC_020163.1 4788321 4789814 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4-hydroxybenzoate decarboxylase 4788321..4789814 Escherichia coli APEC O78 14484570 YP_007383769.1 CDS APECO78_23040 NC_020163.1 4789860 4790561 D COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; FMN reductase 4789860..4790561 Escherichia coli APEC O78 14484571 YP_007383770.1 CDS fadA NC_020163.1 4790745 4791908 R COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase complement(4790745..4791908) Escherichia coli APEC O78 14484572 YP_007383771.1 CDS fadB NC_020163.1 4791918 4794107 R COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha complement(4791918..4794107) Escherichia coli APEC O78 14484573 YP_007383772.1 CDS APECO78_23055 NC_020163.1 4794297 4795628 D COG0006 Xaa-Pro aminopeptidase; proline dipeptidase 4794297..4795628 Escherichia coli APEC O78 14484574 YP_007383773.1 CDS APECO78_23060 NC_020163.1 4795628 4796242 D COG1739 Uncharacterized conserved protein; hypothetical protein 4795628..4796242 Escherichia coli APEC O78 14484575 YP_007383774.1 CDS APECO78_23065 NC_020163.1 4796281 4797732 D COG0168 Trk-type K+ transport systems, membrane components; potassium transporter 4796281..4797732 Escherichia coli APEC O78 14484576 YP_007383775.1 CDS APECO78_23070 NC_020163.1 4797744 4798289 D COG4635 Flavodoxin; protoporphyrinogen oxidase 4797744..4798289 Escherichia coli APEC O78 14484577 APECO78_t23077 tRNA APECO78_t23077 NC_020163.1 135261 135337 D tRNA-Ile 135261..135337 Escherichia coli APEC O78 14484674 APECO78_t23079 tRNA APECO78_t23079 NC_020163.1 142160 142235 D tRNA-Thr 142160..142235 Escherichia coli APEC O78 14480119 APECO78_t23081 tRNA APECO78_t23081 NC_020163.1 142244 142328 D tRNA-Tyr 142244..142328 Escherichia coli APEC O78 14484579 APECO78_t23083 tRNA APECO78_t23083 NC_020163.1 142445 142519 D tRNA-Gly 142445..142519 Escherichia coli APEC O78 14484580 APECO78_t23085 tRNA APECO78_t23085 NC_020163.1 142526 142601 D tRNA-Thr 142526..142601 Escherichia coli APEC O78 14484581 APECO78_t23087 tRNA APECO78_t23087 NC_020163.1 176509 176585 D tRNA-Ile 176509..176585 Escherichia coli APEC O78 14484675 APECO78_t23089 tRNA APECO78_t23089 NC_020163.1 176628 176703 D tRNA-Ala 176628..176703 Escherichia coli APEC O78 14484583 APECO78_t23091 tRNA APECO78_t23091 NC_020163.1 352315 352390 R tRNA-Phe complement(352315..352390) Escherichia coli APEC O78 14480307 APECO78_t23093 tRNA APECO78_t23093 NC_020163.1 381558 381633 D tRNA-Gly 381558..381633 Escherichia coli APEC O78 14480337 APECO78_t23095 tRNA APECO78_t23095 NC_020163.1 381670 381745 D tRNA-Gly 381670..381745 Escherichia coli APEC O78 14484586 APECO78_t23097 tRNA APECO78_t23097 NC_020163.1 381781 381856 D tRNA-Gly 381781..381856 Escherichia coli APEC O78 14484587 APECO78_t23099 tRNA APECO78_t23099 NC_020163.1 494603 494687 D tRNA-Leu 494603..494687 Escherichia coli APEC O78 14480449 APECO78_t23101 tRNA APECO78_t23101 NC_020163.1 625544 625630 R tRNA-Leu complement(625544..625630) Escherichia coli APEC O78 14480585 APECO78_t23103 tRNA APECO78_t23103 NC_020163.1 625665 625751 R tRNA-Leu complement(625665..625751) Escherichia coli APEC O78 14484590 APECO78_t23105 tRNA APECO78_t23105 NC_020163.1 625780 625866 R tRNA-Leu complement(625780..625866) Escherichia coli APEC O78 14484591 APECO78_t23107 tRNA APECO78_t23107 NC_020163.1 925918 925994 D tRNA-Ile 925918..925994 Escherichia coli APEC O78 14484676 APECO78_t23109 tRNA APECO78_t23109 NC_020163.1 926037 926112 D tRNA-Ala 926037..926112 Escherichia coli APEC O78 14484593 APECO78_t23111 tRNA APECO78_t23111 NC_020163.1 929466 929542 D tRNA-Asp 929466..929542 Escherichia coli APEC O78 14484669 APECO78_t23113 tRNA APECO78_t23113 NC_020163.1 937690 937766 D tRNA-Asp 937690..937766 Escherichia coli APEC O78 14480882 APECO78_t23115 tRNA APECO78_t23115 NC_020163.1 967115 967190 D tRNA-Thr 967115..967190 Escherichia coli APEC O78 14480913 APECO78_t23117 tRNA APECO78_t23117 NC_020163.1 1059650 1059730 D tRNA-OTHER 1059650..1059730 Escherichia coli APEC O78 14481013 APECO78_t23119 tRNA APECO78_t23119 NC_020163.1 1269629 1269705 D tRNA-Arg 1269629..1269705 Escherichia coli APEC O78 14481216 APECO78_t23121 tRNA APECO78_t23121 NC_020163.1 1416965 1417039 R tRNA-Gln complement(1416965..1417039) Escherichia coli APEC O78 14481358 APECO78_t23123 tRNA APECO78_t23123 NC_020163.1 1417077 1417151 R tRNA-Gln complement(1417077..1417151) Escherichia coli APEC O78 14484600 APECO78_t23125 tRNA APECO78_t23125 NC_020163.1 1417200 1417276 R tRNA-Met complement(1417200..1417276) Escherichia coli APEC O78 14484601 APECO78_t23127 tRNA APECO78_t23127 NC_020163.1 1417292 1417366 R tRNA-Gln complement(1417292..1417366) Escherichia coli APEC O78 14484602 APECO78_t23129 tRNA APECO78_t23129 NC_020163.1 1417401 1417475 R tRNA-Gln complement(1417401..1417475) Escherichia coli APEC O78 14484603 APECO78_t23131 tRNA APECO78_t23131 NC_020163.1 1417499 1417583 R tRNA-Leu complement(1417499..1417583) Escherichia coli APEC O78 14484604 APECO78_t23133 tRNA APECO78_t23133 NC_020163.1 1417592 1417668 R tRNA-Met complement(1417592..1417668) Escherichia coli APEC O78 14484605 APECO78_t23135 tRNA APECO78_t23135 NC_020163.1 1498662 1498737 D tRNA-Lys 1498662..1498737 Escherichia coli APEC O78 14481426 APECO78_t23137 tRNA APECO78_t23137 NC_020163.1 1498873 1498948 D tRNA-Val 1498873..1498948 Escherichia coli APEC O78 14484607 APECO78_t23139 tRNA APECO78_t23139 NC_020163.1 1498951 1499026 D tRNA-Lys 1498951..1499026 Escherichia coli APEC O78 14484608 APECO78_t23141 tRNA APECO78_t23141 NC_020163.1 1499176 1499251 D tRNA-Val 1499176..1499251 Escherichia coli APEC O78 14484609 APECO78_t23143 tRNA APECO78_t23143 NC_020163.1 1499255 1499330 D tRNA-Lys 1499255..1499330 Escherichia coli APEC O78 14484610 APECO78_t23145 tRNA APECO78_t23145 NC_020163.1 1499477 1499552 D tRNA-Lys 1499477..1499552 Escherichia coli APEC O78 14484611 APECO78_t23147 tRNA APECO78_t23147 NC_020163.1 1499586 1499661 D tRNA-Lys 1499586..1499661 Escherichia coli APEC O78 14484612 APECO78_t23149 tRNA APECO78_t23149 NC_020163.1 1681051 1681138 R tRNA-Ser complement(1681051..1681138) Escherichia coli APEC O78 14481615 APECO78_t23151 tRNA APECO78_t23151 NC_020163.1 1818869 1818956 R tRNA-Ser complement(1818869..1818956) Escherichia coli APEC O78 14481746 APECO78_t23153 tRNA APECO78_t23153 NC_020163.1 1883626 1883713 R tRNA-Ser complement(1883626..1883713) Escherichia coli APEC O78 14481804 APECO78_t23155 tRNA APECO78_t23155 NC_020163.1 2058554 2058638 R tRNA-Tyr complement(2058554..2058638) Escherichia coli APEC O78 14481981 APECO78_t23157 tRNA APECO78_t23157 NC_020163.1 2058673 2058757 R tRNA-Tyr complement(2058673..2058757) Escherichia coli APEC O78 14484617 APECO78_t23159 tRNA APECO78_t23159 NC_020163.1 2504378 2504454 D tRNA-Val 2504378..2504454 Escherichia coli APEC O78 14482405 APECO78_t23161 tRNA APECO78_t23161 NC_020163.1 2504459 2504535 D tRNA-Val 2504459..2504535 Escherichia coli APEC O78 14484619 APECO78_t23163 tRNA APECO78_t23163 NC_020163.1 2739960 2740046 R tRNA-Leu complement(2739960..2740046) Escherichia coli APEC O78 14482643 APECO78_t23165 tRNA APECO78_t23165 NC_020163.1 2740059 2740132 R tRNA-Cys complement(2740059..2740132) Escherichia coli APEC O78 14484621 APECO78_t23167 tRNA APECO78_t23167 NC_020163.1 2740187 2740262 R tRNA-Gly complement(2740187..2740262) Escherichia coli APEC O78 14484622 APECO78_t23169 tRNA APECO78_t23169 NC_020163.1 2796075 2796164 R tRNA-Ser complement(2796075..2796164) Escherichia coli APEC O78 14482706 APECO78_t23171 tRNA APECO78_t23171 NC_020163.1 2797156 2797231 D tRNA-Asn 2797156..2797231 Escherichia coli APEC O78 14482707 APECO78_t23173 tRNA APECO78_t23173 NC_020163.1 2822216 2822291 R tRNA-Asn complement(2822216..2822291) Escherichia coli APEC O78 14482719 APECO78_t23175 tRNA APECO78_t23175 NC_020163.1 2824040 2824115 D tRNA-Asn 2824040..2824115 Escherichia coli APEC O78 14482720 APECO78_t23177 tRNA APECO78_t23177 NC_020163.1 2826449 2826524 D tRNA-Asn 2826449..2826524 Escherichia coli APEC O78 14482722 APECO78_t23179 tRNA APECO78_t23179 NC_020163.1 3037935 3038011 D tRNA-Pro 3037935..3038011 Escherichia coli APEC O78 14482905 APECO78_t23181 tRNA APECO78_t23181 NC_020163.1 3054020 3054097 D tRNA-Pro 3054020..3054097 Escherichia coli APEC O78 14482929 APECO78_t23183 tRNA APECO78_t23183 NC_020163.1 3227421 3227495 D tRNA-Arg 3227421..3227495 Escherichia coli APEC O78 14483080 APECO78_t23185 tRNA APECO78_t23185 NC_020163.1 3270787 3270862 R tRNA-Ala complement(3270787..3270862) Escherichia coli APEC O78 14483114 APECO78_t23187 tRNA APECO78_t23187 NC_020163.1 3270902 3270977 R tRNA-Ala complement(3270902..3270977) Escherichia coli APEC O78 14484632 APECO78_t23189 tRNA APECO78_t23189 NC_020163.1 3273677 3273752 D tRNA-Val 3273677..3273752 Escherichia coli APEC O78 14483117 APECO78_t23191 tRNA APECO78_t23191 NC_020163.1 3273797 3273872 D tRNA-Val 3273797..3273872 Escherichia coli APEC O78 14484634 APECO78_t23193 tRNA APECO78_t23193 NC_020163.1 3273919 3273994 D tRNA-Val 3273919..3273994 Escherichia coli APEC O78 14484635 APECO78_t23195 tRNA APECO78_t23195 NC_020163.1 3273999 3274074 D tRNA-Lys 3273999..3274074 Escherichia coli APEC O78 14484636 APECO78_t23197 tRNA APECO78_t23197 NC_020163.1 3473886 3473961 R tRNA-Ala complement(3473886..3473961) Escherichia coli APEC O78 14484683 APECO78_t23199 tRNA APECO78_t23199 NC_020163.1 3474004 3474080 R tRNA-Ile complement(3474004..3474080) Escherichia coli APEC O78 14484638 APECO78_t23201 tRNA APECO78_t23201 NC_020163.1 3548076 3548152 R tRNA-Arg complement(3548076..3548152) Escherichia coli APEC O78 14483375 APECO78_t23203 tRNA APECO78_t23203 NC_020163.1 3548351 3548427 R tRNA-Arg complement(3548351..3548427) Escherichia coli APEC O78 14484640 APECO78_t23205 tRNA APECO78_t23205 NC_020163.1 3548491 3548567 R tRNA-Arg complement(3548491..3548567) Escherichia coli APEC O78 14484641 APECO78_t23207 tRNA APECO78_t23207 NC_020163.1 3548765 3548841 R tRNA-Arg complement(3548765..3548841) Escherichia coli APEC O78 14484642 APECO78_t23209 tRNA APECO78_t23209 NC_020163.1 3548845 3548937 R tRNA-Ser complement(3548845..3548937) Escherichia coli APEC O78 14484643 APECO78_t23211 tRNA APECO78_t23211 NC_020163.1 3679581 3679657 D tRNA-Met 3679581..3679657 Escherichia coli APEC O78 14483505 APECO78_t23213 tRNA APECO78_t23213 NC_020163.1 3679691 3679767 D tRNA-Met 3679691..3679767 Escherichia coli APEC O78 14484645 APECO78_t23215 tRNA APECO78_t23215 NC_020163.1 3679801 3679877 D tRNA-Met 3679801..3679877 Escherichia coli APEC O78 14484646 APECO78_t23217 tRNA APECO78_t23217 NC_020163.1 3743241 3743314 R tRNA-Gly complement(3743241..3743314) Escherichia coli APEC O78 14483572 APECO78_t23219 tRNA APECO78_t23219 NC_020163.1 3858714 3858789 D tRNA-Phe 3858714..3858789 Escherichia coli APEC O78 14483680 APECO78_t23221 tRNA APECO78_t23221 NC_020163.1 3975590 3975665 D tRNA-Met 3975590..3975665 Escherichia coli APEC O78 14483794 APECO78_t23223 tRNA APECO78_t23223 NC_020163.1 4086957 4087033 R tRNA-Met complement(4086957..4087033) Escherichia coli APEC O78 14483903 APECO78_t23225 tRNA APECO78_t23225 NC_020163.1 4090816 4090902 R tRNA-Leu complement(4090816..4090902) Escherichia coli APEC O78 14483905 APECO78_t23227 tRNA APECO78_t23227 NC_020163.1 4185017 4185092 R tRNA-Thr complement(4185017..4185092) Escherichia coli APEC O78 14484671 APECO78_t23229 tRNA APECO78_t23229 NC_020163.1 4188405 4188480 R tRNA-Ala complement(4188405..4188480) Escherichia coli APEC O78 14484684 APECO78_t23231 tRNA APECO78_t23231 NC_020163.1 4188523 4188599 R tRNA-Ile complement(4188523..4188599) Escherichia coli APEC O78 14484654 APECO78_t23233 tRNA APECO78_t23233 NC_020163.1 4465165 4465241 R tRNA-Pro complement(4465165..4465241) Escherichia coli APEC O78 14484271 APECO78_t23235 tRNA APECO78_t23235 NC_020163.1 4595913 4596007 D tRNA-Sec 4595913..4596007 Escherichia coli APEC O78 14484390 APECO78_t23237 tRNA APECO78_t23237 NC_020163.1 4708379 4708455 D tRNA-Ile 4708379..4708455 Escherichia coli APEC O78 14484679 APECO78_t23239 tRNA APECO78_t23239 NC_020163.1 4708498 4708573 D tRNA-Ala 4708498..4708573 Escherichia coli APEC O78 14484658 APECO78_t23241 tRNA APECO78_t23241 NC_020163.1 4711927 4712003 D tRNA-Asp 4711927..4712003 Escherichia coli APEC O78 14484673 APECO78_t23243 tRNA APECO78_t23243 NC_020163.1 4712012 4712087 D tRNA-Trp 4712012..4712087 Escherichia coli APEC O78 14484660 APECO78_t23245 tRNA APECO78_t23245 NC_020163.1 4747373 4747449 D tRNA-Arg 4747373..4747449 Escherichia coli APEC O78 14484529 APECO78_t23247 tRNA APECO78_t23247 NC_020163.1 4747508 4747583 D tRNA-His 4747508..4747583 Escherichia coli APEC O78 14484662 APECO78_t23249 tRNA APECO78_t23249 NC_020163.1 4747604 4747690 D tRNA-Leu 4747604..4747690 Escherichia coli APEC O78 14484663 APECO78_t23251 tRNA APECO78_t23251 NC_020163.1 4747733 4747809 D tRNA-Pro 4747733..4747809 Escherichia coli APEC O78 14484664 APECO78_r23267 rRNA APECO78_r23267 NC_020163.1 133650 135204 D 16S ribosomal RNA 133650..135204 Escherichia coli APEC O78 14480116 APECO78_r23279 rRNA APECO78_r23279 NC_020163.1 135579 138485 D 23S ribosomal RNA 135579..138485 Escherichia coli APEC O78 14484578 APECO78_r23253 rRNA APECO78_r23253 NC_020163.1 138579 138694 D 5S ribosomal RNA 138579..138694 Escherichia coli APEC O78 14484680 APECO78_r23269 rRNA APECO78_r23269 NC_020163.1 174898 176452 D 16S ribosomal RNA 174898..176452 Escherichia coli APEC O78 14480147 APECO78_r23281 rRNA APECO78_r23281 NC_020163.1 176887 179793 D 23S ribosomal RNA 176887..179793 Escherichia coli APEC O78 14484584 APECO78_r23255 rRNA APECO78_r23255 NC_020163.1 179887 180002 D 5S ribosomal RNA 179887..180002 Escherichia coli APEC O78 14484681 APECO78_r23271 rRNA APECO78_r23271 NC_020163.1 924307 925861 D 16S ribosomal RNA 924307..925861 Escherichia coli APEC O78 14480873 APECO78_r23283 rRNA APECO78_r23283 NC_020163.1 926296 929202 D 23S ribosomal RNA 926296..929202 Escherichia coli APEC O78 14484594 APECO78_r23257 rRNA APECO78_r23257 NC_020163.1 929296 929411 D 5S ribosomal RNA 929296..929411 Escherichia coli APEC O78 14484682 APECO78_r23259 rRNA APECO78_r23259 NC_020163.1 3470588 3470703 R 5S ribosomal RNA complement(3470588..3470703) Escherichia coli APEC O78 14483305 APECO78_r23285 rRNA APECO78_r23285 NC_020163.1 3470797 3473702 R 23S ribosomal RNA complement(3470797..3473702) Escherichia coli APEC O78 14484670 APECO78_r23273 rRNA APECO78_r23273 NC_020163.1 3474137 3475691 R 16S ribosomal RNA complement(3474137..3475691) Escherichia coli APEC O78 14484639 APECO78_r23261 rRNA APECO78_r23261 NC_020163.1 4184862 4184977 R 5S ribosomal RNA complement(4184862..4184977) Escherichia coli APEC O78 14483999 APECO78_r23263 rRNA APECO78_r23263 NC_020163.1 4185107 4185222 R 5S ribosomal RNA complement(4185107..4185222) Escherichia coli APEC O78 14484653 APECO78_r23287 rRNA APECO78_r23287 NC_020163.1 4185316 4188221 R 23S ribosomal RNA complement(4185316..4188221) Escherichia coli APEC O78 14484672 APECO78_r23275 rRNA APECO78_r23275 NC_020163.1 4188656 4190210 R 16S ribosomal RNA complement(4188656..4190210) Escherichia coli APEC O78 14484655 APECO78_r23277 rRNA APECO78_r23277 NC_020163.1 4706768 4708322 D 16S ribosomal RNA 4706768..4708322 Escherichia coli APEC O78 14484497 APECO78_r23289 rRNA APECO78_r23289 NC_020163.1 4708757 4711663 D 23S ribosomal RNA 4708757..4711663 Escherichia coli APEC O78 14484659 APECO78_r23265 rRNA APECO78_r23265 NC_020163.1 4711757 4711872 D 5S ribosomal RNA 4711757..4711872 Escherichia coli APEC O78 14484685