-- dump date 20140619_081249 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_007379187.1 443615331 14484666 complement(61..423) 1 NC_020163.1 COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein B 423 14484666 APECO78_00005 Escherichia coli APEC O78 molybdopterin-guanine dinucleotide biosynthesis protein B YP_007379187.1 61 R 1274814 CDS YP_007379188.1 443615332 14479990 complement(541..1125) 1 NC_020163.1 COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein 1125 14479990 APECO78_00010 Escherichia coli APEC O78 molybdopterin-guanine dinucleotide biosynthesis protein YP_007379188.1 541 R 1274814 CDS YP_007379189.1 443615333 14479991 1195..1464 1 NC_020163.1 COG3084 Uncharacterized protein conserved in bacteria; hypothetical protein 1464 14479991 APECO78_00015 Escherichia coli APEC O78 hypothetical protein YP_007379189.1 1195 D 1274814 CDS YP_007379190.1 443615334 14479992 1541..2527 1 NC_020163.1 COG2334 Putative homoserine kinase type II (protein kinase fold); hypothetical protein 2527 14479992 APECO78_00020 Escherichia coli APEC O78 hypothetical protein YP_007379190.1 1541 D 1274814 CDS YP_007379191.1 443615335 14479993 2544..3170 1 NC_020163.1 COG0526 Thiol-disulfide isomerase and thioredoxins; protein disulfide isomerase I 3170 14479993 APECO78_00025 Escherichia coli APEC O78 protein disulfide isomerase I YP_007379191.1 2544 D 1274814 CDS YP_007379192.1 443615336 14479994 3325..4755 1 NC_020163.1 COG5339 Uncharacterized protein conserved in bacteria; hypothetical protein 4755 14479994 APECO78_00030 Escherichia coli APEC O78 hypothetical protein YP_007379192.1 3325 D 1274814 CDS YP_007379193.1 443615337 14479995 complement(4796..5728) 1 NC_020163.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; acyltransferase 5728 14479995 APECO78_00035 Escherichia coli APEC O78 acyltransferase YP_007379193.1 4796 R 1274814 CDS YP_007379194.1 443615338 14479996 complement(5848..6090) 1 NC_020163.1 hypothetical protein 6090 14479996 APECO78_00040 Escherichia coli APEC O78 hypothetical protein YP_007379194.1 5848 R 1274814 CDS YP_007379195.1 443615339 14479997 6092..8878 1 NC_020163.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I 8878 14479997 APECO78_00045 Escherichia coli APEC O78 DNA polymerase I YP_007379195.1 6092 D 1274814 CDS YP_007379196.1 443615340 14479998 complement(9260..9892) 1 NC_020163.1 COG0218 Predicted GTPase; GTP-binding protein YsxC 9892 engB 14479998 engB Escherichia coli APEC O78 GTP-binding protein YsxC YP_007379196.1 9260 R 1274814 CDS YP_007379197.1 443615341 14479999 10189..10266 1 NC_020163.1 hypothetical protein 10266 14479999 APECO78_00055 Escherichia coli APEC O78 hypothetical protein YP_007379197.1 10189 D 1274814 CDS YP_007379198.1 443615342 14480000 10474..10983 1 NC_020163.1 COG3078 Uncharacterized protein conserved in bacteria; GTPase activator 10983 14480000 APECO78_00060 Escherichia coli APEC O78 GTPase activator YP_007379198.1 10474 D 1274814 CDS YP_007379199.1 443615343 14480001 11172..12545 1 NC_020163.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 12545 14480001 APECO78_00065 Escherichia coli APEC O78 coproporphyrinogen III oxidase YP_007379199.1 11172 D 1274814 CDS YP_007379200.1 443615344 14480002 complement(12735..12845) 1 NC_020163.1 hypothetical protein 12845 14480002 APECO78_00070 Escherichia coli APEC O78 hypothetical protein YP_007379200.1 12735 R 1274814 CDS YP_007379201.1 443615345 14480003 complement(12957..14366) 1 NC_020163.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; nitrogen regulation protein NR(I) 14366 glnG 14480003 glnG Escherichia coli APEC O78 nitrogen regulation protein NR(I) YP_007379201.1 12957 R 1274814 CDS YP_007379202.1 443615346 14480004 complement(14378..15427) 1 NC_020163.1 COG3852 Signal transduction histidine kinase, nitrogen specific; nitrogen regulation protein NR(II) 15427 14480004 APECO78_00080 Escherichia coli APEC O78 nitrogen regulation protein NR(II) YP_007379202.1 14378 R 1274814 CDS YP_007379203.1 443615347 14480005 15526..15705 1 NC_020163.1 hypothetical protein 15705 14480005 APECO78_00085 Escherichia coli APEC O78 hypothetical protein YP_007379203.1 15526 D 1274814 CDS YP_007379204.1 443615348 14480006 complement(15746..17155) 1 NC_020163.1 COG0174 Glutamine synthetase; glutamine synthetase 17155 14480006 APECO78_00090 Escherichia coli APEC O78 glutamine synthetase YP_007379204.1 15746 R 1274814 CDS YP_007379205.1 443615349 14480007 17528..19351 1 NC_020163.1 COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein 19351 14480007 APECO78_00095 Escherichia coli APEC O78 GTP-binding protein YP_007379205.1 17528 D 1274814 CDS YP_007379206.1 443615350 14480008 19568..20278 1 NC_020163.1 COG2188 Transcriptional regulators; GntR family transcriptional regulator 20278 14480008 APECO78_00100 Escherichia coli APEC O78 GntR family transcriptional regulator YP_007379206.1 19568 D 1274814 CDS YP_007379207.1 443615351 14480009 20286..21266 1 NC_020163.1 COG1082 Sugar phosphate isomerases/epimerases; sugar phosphate isomerase 21266 14480009 APECO78_00105 Escherichia coli APEC O78 sugar phosphate isomerase YP_007379207.1 20286 D 1274814 CDS YP_007379208.1 443615352 14480010 21368..22633 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 22633 14480010 APECO78_00110 Escherichia coli APEC O78 transporter YP_007379208.1 21368 D 1274814 CDS YP_007379209.1 443615353 14480011 complement(22724..23416) 1 NC_020163.1 outer membrane porin L 23416 ompL 14480011 ompL Escherichia coli APEC O78 outer membrane porin L YP_007379209.1 22724 R 1274814 CDS YP_007379210.1 443615354 14480012 complement(23484..24887) 1 NC_020163.1 COG2211 Na+/melibiose symporter and related transporters; putative transporter 24887 14480012 APECO78_00120 Escherichia coli APEC O78 putative transporter YP_007379210.1 23484 R 1274814 CDS YP_007379211.1 443615355 14480013 complement(24930..26315) 1 NC_020163.1 COG2211 Na+/melibiose symporter and related transporters; putative transport protein 26315 14480013 APECO78_00125 Escherichia coli APEC O78 putative transport protein YP_007379211.1 24930 R 1274814 CDS YP_007379212.1 443615356 14480014 complement(26361..28397) 1 NC_020163.1 COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase 28397 14480014 APECO78_00130 Escherichia coli APEC O78 alpha-glucosidase YP_007379212.1 26361 R 1274814 CDS YP_007379213.1 443615357 14480015 complement(28596..29498) 1 NC_020163.1 COG2017 Galactose mutarotase and related enzymes; aldose-1-epimerase 29498 14480015 APECO78_00135 Escherichia coli APEC O78 aldose-1-epimerase YP_007379213.1 28596 R 1274814 CDS YP_007379214.1 443615358 14480016 complement(29636..30877) 1 NC_020163.1 COG2942 N-acyl-D-glucosamine 2-epimerase; putative glucosamine isomerase 30877 14480016 APECO78_00140 Escherichia coli APEC O78 putative glucosamine isomerase YP_007379214.1 29636 R 1274814 CDS YP_007379215.1 443615359 14480017 complement(30894..31772) 1 NC_020163.1 COG3684 Tagatose-1,6-bisphosphate aldolase; putative aldolase 31772 14480017 APECO78_00145 Escherichia coli APEC O78 putative aldolase YP_007379215.1 30894 R 1274814 CDS YP_007379216.1 443615360 14480018 complement(31796..32692) 1 NC_020163.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; NADH-dependent gamma-hydroxybutyrate dehydrogenase 32692 14480018 APECO78_00150 Escherichia coli APEC O78 NADH-dependent gamma-hydroxybutyrate dehydrogenase YP_007379216.1 31796 R 1274814 CDS YP_007379217.1 443615361 14480019 32860..33756 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; putative sugar kinase 33756 14480019 APECO78_00155 Escherichia coli APEC O78 putative sugar kinase YP_007379217.1 32860 D 1274814 CDS YP_007379218.1 443615362 14480020 33790..34575 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; transcriptional regulator 34575 14480020 APECO78_00160 Escherichia coli APEC O78 transcriptional regulator YP_007379218.1 33790 D 1274814 CDS YP_007379219.1 443615363 14480021 34674..35273 1 NC_020163.1 COG1011 Predicted hydrolase (HAD superfamily); alpha-D-glucose-1-phosphatase 35273 14480021 APECO78_00165 Escherichia coli APEC O78 alpha-D-glucose-1-phosphatase YP_007379219.1 34674 D 1274814 CDS YP_007379220.1 443615364 14480022 35267..36139 1 NC_020163.1 COG1295 Predicted membrane protein; hypothetical protein 36139 14480022 APECO78_00170 Escherichia coli APEC O78 hypothetical protein YP_007379220.1 35267 D 1274814 CDS YP_007379221.1 443615365 14480023 36136..36573 1 NC_020163.1 COG1490 D-Tyr-tRNAtyr deacylase; D-tyrosyl-tRNA(Tyr) deacylase 36573 14480023 APECO78_00175 Escherichia coli APEC O78 D-tyrosyl-tRNA(Tyr) deacylase YP_007379221.1 36136 D 1274814 CDS YP_007379222.1 443615366 14480024 36570..37559 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 37559 14480024 APECO78_00180 Escherichia coli APEC O78 acetyltransferase YP_007379222.1 36570 D 1274814 CDS YP_007379223.1 443615367 14480025 37974..38081 1 NC_020163.1 hypothetical protein 38081 14480025 APECO78_00185 Escherichia coli APEC O78 hypothetical protein YP_007379223.1 37974 D 1274814 CDS YP_007379224.1 443615368 14480026 38416..38634 1 NC_020163.1 COG3905 Predicted transcriptional regulator; transcriptional regulator 38634 14480026 APECO78_00190 Escherichia coli APEC O78 transcriptional regulator YP_007379224.1 38416 D 1274814 CDS YP_007379225.1 443615369 14480027 38852..39094 1 NC_020163.1 COG1219 ATP-dependent protease Clp, ATPase subunit; YiiF protein 39094 14480027 APECO78_00195 Escherichia coli APEC O78 YiiF protein YP_007379225.1 38852 D 1274814 CDS YP_007379226.1 443615370 14480028 complement(39110..39244) 1 NC_020163.1 hypothetical protein 39244 14480028 APECO78_00200 Escherichia coli APEC O78 hypothetical protein YP_007379226.1 39110 R 1274814 CDS YP_007379227.1 443615371 14480029 complement(39424..40353) 1 NC_020163.1 COG3058 Uncharacterized protein involved in formate dehydrogenase formation; putative formate dehydrogenase formation protein 40353 14480029 APECO78_00205 Escherichia coli APEC O78 putative formate dehydrogenase formation protein YP_007379227.1 39424 R 1274814 CDS YP_007379228.1 443615372 14480030 complement(40350..40985) 1 NC_020163.1 COG2864 Cytochrome b subunit of formate dehydrogenase; formate dehydrogenase-O subunit gamma 40985 14480030 APECO78_00210 Escherichia coli APEC O78 formate dehydrogenase-O subunit gamma YP_007379228.1 40350 R 1274814 CDS YP_007379229.1 443615373 14480031 complement(40982..41884) 1 NC_020163.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-O, iron-sulfur subunit 41884 14480031 APECO78_00215 Escherichia coli APEC O78 formate dehydrogenase-O, iron-sulfur subunit YP_007379229.1 40982 R 1274814 CDS YP_007379230.1 443615374 14480032 complement(41897..44311) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-O major subunit 44311 14480032 APECO78_00220 Escherichia coli APEC O78 formate dehydrogenase-O major subunit YP_007379230.1 41897 R 1274814 CDS YP_007379231.1 443615375 14480033 complement(44360..44947) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-O major subunit 44947 14480033 APECO78_00225 Escherichia coli APEC O78 formate dehydrogenase-O major subunit YP_007379231.1 44360 R 1274814 CDS YP_007379232.1 443615376 14480034 45141..45974 1 NC_020163.1 COG1526 Uncharacterized protein required for formate dehydrogenase activity; formate dehydrogenase accessory protein 45974 14480034 APECO78_00230 Escherichia coli APEC O78 formate dehydrogenase accessory protein YP_007379232.1 45141 D 1274814 CDS YP_007379233.1 443615377 14480035 46127..47167 1 NC_020163.1 hypothetical protein 47167 14480035 APECO78_00235 Escherichia coli APEC O78 hypothetical protein YP_007379233.1 46127 D 1274814 CDS YP_007379234.1 443615378 14480036 complement(47217..48965) 1 NC_020163.1 COG3711 Transcriptional antiterminator; frv operon regulatory protein 48965 14480036 APECO78_00240 Escherichia coli APEC O78 frv operon regulatory protein YP_007379234.1 47217 R 1274814 CDS YP_007379235.1 443615379 14480037 complement(48965..50035) 1 NC_020163.1 COG1363 Cellulase M and related proteins; peptidase 50035 14480037 APECO78_00245 Escherichia coli APEC O78 peptidase YP_007379235.1 48965 R 1274814 CDS YP_007379236.1 443615380 14480038 complement(50025..51476) 1 NC_020163.1 COG1445 Phosphotransferase system fructose-specific component IIB; PTS system subunit IIC 51476 14480038 APECO78_00250 Escherichia coli APEC O78 PTS system subunit IIC YP_007379236.1 50025 R 1274814 CDS YP_007379237.1 443615381 14480039 complement(51487..51933) 1 NC_020163.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); fructose-like phosphotransferase system subunit EIIA 51933 14480039 APECO78_00255 Escherichia coli APEC O78 fructose-like phosphotransferase system subunit EIIA YP_007379237.1 51487 R 1274814 CDS YP_007379238.1 443615382 14480040 complement(52234..52548) 1 NC_020163.1 COG3254 Uncharacterized conserved protein; L-rhamnose mutarotase 52548 14480040 APECO78_00260 Escherichia coli APEC O78 L-rhamnose mutarotase YP_007379238.1 52234 R 1274814 CDS YP_007379239.1 443615383 14480041 complement(52558..53382) 1 NC_020163.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; rhamnulose-1-phosphate aldolase 53382 14480041 APECO78_00265 Escherichia coli APEC O78 rhamnulose-1-phosphate aldolase YP_007379239.1 52558 R 1274814 CDS YP_007379240.1 443615384 14480042 complement(53465..54724) 1 NC_020163.1 COG4806 L-rhamnose isomerase; L-rhamnose isomerase 54724 14480042 APECO78_00270 Escherichia coli APEC O78 L-rhamnose isomerase YP_007379240.1 53465 R 1274814 CDS YP_007379241.1 443615385 14480043 complement(54721..56190) 1 NC_020163.1 COG1070 Sugar (pentulose and hexulose) kinases; rhamnulokinase 56190 rhaB 14480043 rhaB Escherichia coli APEC O78 rhamnulokinase YP_007379241.1 54721 R 1274814 CDS YP_007379242.1 443615386 14480044 56269..56418 1 NC_020163.1 hypothetical protein 56418 14480044 APECO78_00280 Escherichia coli APEC O78 hypothetical protein YP_007379242.1 56269 D 1274814 CDS YP_007379243.1 443615387 14480045 56478..57314 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaS 57314 14480045 APECO78_00285 Escherichia coli APEC O78 transcriptional activator RhaS YP_007379243.1 56478 D 1274814 CDS YP_007379244.1 443615388 14480046 57298..58236 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional activator RhaR 58236 14480046 APECO78_00290 Escherichia coli APEC O78 transcriptional activator RhaR YP_007379244.1 57298 D 1274814 CDS YP_007379245.1 443615389 14480047 complement(58233..59267) 1 NC_020163.1 rhamnose-proton symporter 59267 14480047 APECO78_00295 Escherichia coli APEC O78 rhamnose-proton symporter YP_007379245.1 58233 R 1274814 CDS YP_007379246.1 443615390 14480048 59552..60172 1 NC_020163.1 COG0605 Superoxide dismutase; superoxide dismutase 60172 14480048 APECO78_00300 Escherichia coli APEC O78 superoxide dismutase YP_007379246.1 59552 D 1274814 CDS YP_007379247.1 443615391 14480049 60432..61415 1 NC_020163.1 2-keto-3-deoxygluconate permease 61415 14480049 APECO78_00305 Escherichia coli APEC O78 2-keto-3-deoxygluconate permease YP_007379247.1 60432 D 1274814 CDS YP_007379248.1 443615392 14480050 61564..62238 1 NC_020163.1 COG2258 Uncharacterized protein conserved in bacteria; 6-N-hydroxylaminopurine resistance protein 62238 14480050 APECO78_00310 Escherichia coli APEC O78 6-N-hydroxylaminopurine resistance protein YP_007379248.1 61564 D 1274814 CDS YP_007379249.1 443615393 14480051 complement(62344..63717) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; two-component sensor protein 63717 cpxA 14480051 cpxA Escherichia coli APEC O78 two-component sensor protein YP_007379249.1 62344 R 1274814 CDS YP_007379250.1 443615394 14480052 complement(63714..64412) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator CpxR 64412 14480052 APECO78_00320 Escherichia coli APEC O78 DNA-binding transcriptional regulator CpxR YP_007379250.1 63714 R 1274814 CDS YP_007379251.1 443615395 14480053 64562..65062 1 NC_020163.1 COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; periplasmic repressor CpxP 65062 cpxP 14480053 cpxP Escherichia coli APEC O78 periplasmic repressor CpxP YP_007379251.1 64562 D 1274814 CDS YP_007379252.1 443615396 14480054 65211..66113 1 NC_020163.1 COG0053 Predicted Co/Zn/Cd cation transporters; ferrous iron efflux protein F 66113 fieF 14480054 fieF Escherichia coli APEC O78 ferrous iron efflux protein F YP_007379252.1 65211 D 1274814 CDS YP_007379253.1 443615397 14480055 66294..67256 1 NC_020163.1 COG0205 6-phosphofructokinase; 6-phosphofructokinase 67256 14480055 APECO78_00335 Escherichia coli APEC O78 6-phosphofructokinase YP_007379253.1 66294 D 1274814 CDS YP_007379254.1 443615398 14480056 67576..68565 1 NC_020163.1 COG1613 ABC-type sulfate transport system, periplasmic component; sulfate transporter subunit 68565 14480056 APECO78_00340 Escherichia coli APEC O78 sulfate transporter subunit YP_007379254.1 67576 D 1274814 CDS YP_007379255.1 443615399 14480057 68672..69427 1 NC_020163.1 COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 69427 14480057 APECO78_00345 Escherichia coli APEC O78 CDP-diacylglycerol pyrophosphatase YP_007379255.1 68672 D 1274814 CDS YP_007379256.1 443615400 14480058 complement(69482..70249) 1 NC_020163.1 COG0149 Triosephosphate isomerase; triosephosphate isomerase 70249 14480058 APECO78_00350 Escherichia coli APEC O78 triosephosphate isomerase YP_007379256.1 69482 R 1274814 CDS YP_007379257.1 443615401 14480059 complement(70357..70956) 1 NC_020163.1 hypothetical protein 70956 14480059 APECO78_00355 Escherichia coli APEC O78 hypothetical protein YP_007379257.1 70357 R 1274814 CDS YP_007379258.1 443615402 14480060 71057..71497 1 NC_020163.1 COG3152 Predicted membrane protein; inner membrane protein 71497 14480060 APECO78_00360 Escherichia coli APEC O78 inner membrane protein YP_007379258.1 71057 D 1274814 CDS YP_007379259.1 443615403 14480061 71709..72008 1 NC_020163.1 COG3691 Uncharacterized protein conserved in bacteria; hypothetical protein 72008 14480061 APECO78_00365 Escherichia coli APEC O78 hypothetical protein YP_007379259.1 71709 D 1274814 CDS YP_007379260.1 443615404 14480062 72035..72463 1 NC_020163.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspD 72463 14480062 APECO78_00370 Escherichia coli APEC O78 universal stress protein UspD YP_007379260.1 72035 D 1274814 CDS YP_007379261.1 443615405 14480063 complement(72468..73214) 1 NC_020163.1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; ferredoxin-NADP reductase 73214 14480063 APECO78_00375 Escherichia coli APEC O78 ferredoxin-NADP reductase YP_007379261.1 72468 R 1274814 CDS YP_007379262.1 443615406 14480064 complement(73311..74321) 1 NC_020163.1 COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; fructose 1,6-bisphosphatase II 74321 glpX 14480064 glpX Escherichia coli APEC O78 fructose 1,6-bisphosphatase II YP_007379262.1 73311 R 1274814 CDS YP_007379263.1 443615407 14480065 complement(74454..75962) 1 NC_020163.1 COG0554 Glycerol kinase; glycerol kinase 75962 14480065 APECO78_00385 Escherichia coli APEC O78 glycerol kinase YP_007379263.1 74454 R 1274814 CDS YP_007379264.1 443615408 14480066 complement(75985..76830) 1 NC_020163.1 COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein 76830 14480066 APECO78_00390 Escherichia coli APEC O78 glycerol uptake facilitator protein YP_007379264.1 75985 R 1274814 CDS YP_007379265.1 443615409 14480067 77262..77501 1 NC_020163.1 COG3074 Uncharacterized protein conserved in bacteria; hypothetical protein 77501 14480067 APECO78_00395 Escherichia coli APEC O78 hypothetical protein YP_007379265.1 77262 D 1274814 CDS YP_007379266.1 443615410 14480068 complement(77586..78071) 1 NC_020163.1 COG0684 Demethylmenaquinone methyltransferase; ribonuclease activity regulator protein RraA 78071 14480068 APECO78_00400 Escherichia coli APEC O78 ribonuclease activity regulator protein RraA YP_007379266.1 77586 R 1274814 CDS YP_007379267.1 443615411 14480069 complement(78164..79090) 1 NC_020163.1 COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoateoctaprenyltransferase 79090 14480069 APECO78_00405 Escherichia coli APEC O78 1,4-dihydroxy-2-naphthoateoctaprenyltransferase YP_007379267.1 78164 R 1274814 CDS YP_007379268.1 443615412 14480070 complement(79157..80488) 1 NC_020163.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU 80488 14480070 APECO78_00410 Escherichia coli APEC O78 ATP-dependent protease ATP-binding subunit HslU YP_007379268.1 79157 R 1274814 CDS YP_007379269.1 443615413 14480071 complement(80498..81028) 1 NC_020163.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease subunit HslV 81028 14480071 APECO78_00415 Escherichia coli APEC O78 ATP-dependent protease subunit HslV YP_007379269.1 80498 R 1274814 CDS YP_007379270.1 443615414 14480072 complement(81121..82080) 1 NC_020163.1 COG3087 Cell division protein; essential cell division protein FtsN 82080 14480072 APECO78_00420 Escherichia coli APEC O78 essential cell division protein FtsN YP_007379270.1 81121 R 1274814 CDS YP_007379271.1 443615415 14480073 complement(82172..83197) 1 NC_020163.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator CytR 83197 14480073 APECO78_00425 Escherichia coli APEC O78 DNA-binding transcriptional regulator CytR YP_007379271.1 82172 R 1274814 CDS YP_007379272.1 443615416 14480074 complement(83353..85551) 1 NC_020163.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; Primosomal protein N' 85551 14480074 APECO78_00430 Escherichia coli APEC O78 Primosomal protein N' YP_007379272.1 83353 R 1274814 CDS YP_007379273.1 443615417 14480075 85754..85966 1 NC_020163.1 COG0254 Ribosomal protein L31; 50S ribosomal protein L31 85966 14480075 APECO78_00435 Escherichia coli APEC O78 50S ribosomal protein L31 YP_007379273.1 85754 D 1274814 CDS YP_007379274.1 443615418 14480076 86126..86458 1 NC_020163.1 COG3209 Rhs family protein; rhsA element core protein RshA 86458 14480076 APECO78_00440 Escherichia coli APEC O78 rhsA element core protein RshA YP_007379274.1 86126 D 1274814 CDS YP_007379275.1 443615419 14480077 86416..90309 1 NC_020163.1 COG3209 Rhs family protein; RhsE core protein 90309 14480077 APECO78_00445 Escherichia coli APEC O78 RhsE core protein YP_007379275.1 86416 D 1274814 CDS YP_007379276.1 443615420 14480078 complement(90604..90918) 1 NC_020163.1 COG1662 Transposase and inactivated derivatives, IS1 family; iso-IS1 InsB protein, transposase 90918 14480078 APECO78_00450 Escherichia coli APEC O78 iso-IS1 InsB protein, transposase YP_007379276.1 90604 R 1274814 CDS YP_007379277.1 443615421 14480079 complement(90912..91097) 1 NC_020163.1 COG1662 Transposase and inactivated derivatives, IS1 family; transposase 91097 14480079 APECO78_00455 Escherichia coli APEC O78 transposase YP_007379277.1 90912 R 1274814 CDS YP_007379278.1 443615422 14480080 complement(91124..91396) 1 NC_020163.1 COG3677 Transposase and inactivated derivatives; hypothetical protein 91396 14480080 APECO78_00460 Escherichia coli APEC O78 hypothetical protein YP_007379278.1 91124 R 1274814 CDS YP_007379279.1 443615423 14480081 complement(91541..92149) 1 NC_020163.1 peptidoglycan peptidase 92149 14480081 APECO78_00465 Escherichia coli APEC O78 peptidoglycan peptidase YP_007379279.1 91541 R 1274814 CDS YP_007379280.1 443615424 14480082 complement(92333..92650) 1 NC_020163.1 COG3060 Transcriptional regulator of met regulon; Transcriptional repressor 92650 14480082 APECO78_00470 Escherichia coli APEC O78 Transcriptional repressor YP_007379280.1 92333 R 1274814 CDS YP_007379281.1 443615425 14480083 complement(92699..92788) 1 NC_020163.1 transcriptional repressor protein MetJ 92788 14480083 APECO78_00475 Escherichia coli APEC O78 transcriptional repressor protein MetJ YP_007379281.1 92699 R 1274814 CDS YP_007379282.1 443615426 14480084 92927..94087 1 NC_020163.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase 94087 14480084 APECO78_00480 Escherichia coli APEC O78 cystathionine gamma-synthase YP_007379282.1 92927 D 1274814 CDS YP_007379283.1 443615427 14480085 94090..96522 1 NC_020163.1 COG0527 Aspartokinases; bifunctional aspartate kinase II/homoserine dehydrogenase II 96522 metL 14480085 metL Escherichia coli APEC O78 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_007379283.1 94090 D 1274814 CDS YP_007379284.1 443615428 14480086 complement(96661..96795) 1 NC_020163.1 hypothetical protein 96795 14480086 APECO78_00490 Escherichia coli APEC O78 hypothetical protein YP_007379284.1 96661 R 1274814 CDS YP_007379285.1 443615429 14480087 96871..97761 1 NC_020163.1 COG0685 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 97761 14480087 APECO78_00495 Escherichia coli APEC O78 5,10-methylenetetrahydrofolate reductase YP_007379285.1 96871 D 1274814 CDS YP_007379286.1 443615430 14480088 98090..100270 1 NC_020163.1 COG0376 Catalase (peroxidase I); catalase/hydroperoxidase HPI(I) 100270 14480088 APECO78_00500 Escherichia coli APEC O78 catalase/hydroperoxidase HPI(I) YP_007379286.1 98090 D 1274814 CDS YP_007379287.1 443615431 14480089 100364..101269 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 101269 14480089 APECO78_00505 Escherichia coli APEC O78 hypothetical protein YP_007379287.1 100364 D 1274814 CDS YP_007379288.1 443615432 14480090 complement(101296..101913) 1 NC_020163.1 COG3738 Uncharacterized protein conserved in bacteria; hypothetical protein 101913 14480090 APECO78_00510 Escherichia coli APEC O78 hypothetical protein YP_007379288.1 101296 R 1274814 CDS YP_007379289.1 443615433 14480091 complement(102025..102156) 1 NC_020163.1 hypothetical protein 102156 14480091 APECO78_00515 Escherichia coli APEC O78 hypothetical protein YP_007379289.1 102025 R 1274814 CDS YP_007379290.1 443615434 14480092 complement(102188..103291) 1 NC_020163.1 COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase 103291 14480092 APECO78_00520 Escherichia coli APEC O78 glycerol dehydrogenase YP_007379290.1 102188 R 1274814 CDS YP_007379291.1 443615435 14480093 complement(103302..103964) 1 NC_020163.1 COG0176 Transaldolase; fructose-6-phosphate aldolase 103964 14480093 APECO78_00525 Escherichia coli APEC O78 fructose-6-phosphate aldolase YP_007379291.1 103302 R 1274814 CDS YP_007379292.1 443615436 14480094 complement(103976..106477) 1 NC_020163.1 COG1925 Phosphotransferase system, HPr-related proteins; mulitfunctional phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system fructose-like transporter subunit IIA 106477 14480094 APECO78_00530 Escherichia coli APEC O78 mulitfunctional phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system fructose-like transporter subunit IIA YP_007379292.1 103976 R 1274814 CDS YP_007379293.1 443615437 14480095 106786..107865 1 NC_020163.1 COG1299 Phosphotransferase system, fructose-specific IIC component; PTS system, fructose-like-2 IIC component 107865 14480095 APECO78_00535 Escherichia coli APEC O78 PTS system, fructose-like-2 IIC component YP_007379293.1 106786 D 1274814 CDS YP_007379294.1 443615438 14480096 107880..108200 1 NC_020163.1 COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-like transporter subunit IIB 108200 14480096 APECO78_00540 Escherichia coli APEC O78 PTS system fructose-like transporter subunit IIB YP_007379294.1 107880 D 1274814 CDS YP_007379295.1 443615439 14480097 108251..110548 1 NC_020163.1 COG1882 Pyruvate-formate lyase; formate acetyltransferase 2 110548 pflD 14480097 pflD Escherichia coli APEC O78 formate acetyltransferase 2 YP_007379295.1 108251 D 1274814 CDS YP_007379296.1 443615440 14480098 110514..111392 1 NC_020163.1 COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase II activase 111392 14480098 APECO78_00550 Escherichia coli APEC O78 pyruvate formate lyase II activase YP_007379296.1 110514 D 1274814 CDS YP_007379297.1 443615441 14480099 111394..111735 1 NC_020163.1 COG1445 Phosphotransferase system fructose-specific component IIB; PTS system fructose-like transporter subunit EIIB 111735 14480099 APECO78_00555 Escherichia coli APEC O78 PTS system fructose-like transporter subunit EIIB YP_007379297.1 111394 D 1274814 CDS YP_007379298.1 443615442 14480100 complement(111722..112573) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 112573 14480100 APECO78_00560 Escherichia coli APEC O78 AraC family transcriptional regulator YP_007379298.1 111722 R 1274814 CDS YP_007379299.1 443615443 14480101 complement(112722..114455) 1 NC_020163.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein 114455 14480101 APECO78_00565 Escherichia coli APEC O78 hypothetical protein YP_007379299.1 112722 R 1274814 CDS YP_007379300.1 443615444 14480102 complement(114638..117289) 1 NC_020163.1 COG2352 Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 117289 14480102 APECO78_00570 Escherichia coli APEC O78 phosphoenolpyruvate carboxylase YP_007379300.1 114638 R 1274814 CDS YP_007379301.1 443615445 14480103 complement(117641..118792) 1 NC_020163.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; acetylornithine deacetylase 118792 14480103 APECO78_00575 Escherichia coli APEC O78 acetylornithine deacetylase YP_007379301.1 117641 R 1274814 CDS YP_007379302.1 443615446 14480104 118946..119950 1 NC_020163.1 COG0002 Acetylglutamate semialdehyde dehydrogenase; N-acetyl-gamma-glutamyl-phosphate reductase 119950 14480104 APECO78_00580 Escherichia coli APEC O78 N-acetyl-gamma-glutamyl-phosphate reductase YP_007379302.1 118946 D 1274814 CDS YP_007379303.1 443615447 14480105 119961..120734 1 NC_020163.1 COG0548 Acetylglutamate kinase; acetylglutamate kinase 120734 14480105 APECO78_00585 Escherichia coli APEC O78 acetylglutamate kinase YP_007379303.1 119961 D 1274814 CDS YP_007379304.1 443615448 14480106 120795..122168 1 NC_020163.1 COG0165 Argininosuccinate lyase; argininosuccinate lyase 122168 14480106 APECO78_00590 Escherichia coli APEC O78 argininosuccinate lyase YP_007379304.1 120795 D 1274814 CDS YP_007379305.1 443615449 14480107 122665..123879 1 NC_020163.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; bifunctional D-altronate/D-mannonate dehydratase 123879 14480107 APECO78_00595 Escherichia coli APEC O78 bifunctional D-altronate/D-mannonate dehydratase YP_007379305.1 122665 D 1274814 CDS YP_007379306.1 443615450 14480108 123946..125229 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 125229 14480108 APECO78_00600 Escherichia coli APEC O78 transporter YP_007379306.1 123946 D 1274814 CDS YP_007379307.1 443615451 14480109 125481..126398 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator OxyR 126398 14480109 APECO78_00605 Escherichia coli APEC O78 DNA-binding transcriptional regulator OxyR YP_007379307.1 125481 D 1274814 CDS YP_007379308.1 443615452 14480110 complement(126381..127781) 1 NC_020163.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; soluble pyridine nucleotide transhydrogenase 127781 14480110 APECO78_00610 Escherichia coli APEC O78 soluble pyridine nucleotide transhydrogenase YP_007379308.1 126381 R 1274814 CDS YP_007379309.1 443615453 14480111 128058..128762 1 NC_020163.1 COG1309 Transcriptional regulator; putative transcriptional regulator 128762 14480111 APECO78_00615 Escherichia coli APEC O78 putative transcriptional regulator YP_007379309.1 128058 D 1274814 CDS YP_007379310.1 443615454 14480112 128762..129121 1 NC_020163.1 hypothetical protein 129121 14480112 APECO78_00620 Escherichia coli APEC O78 hypothetical protein YP_007379310.1 128762 D 1274814 CDS YP_007379311.1 443615455 14480113 complement(129161..130261) 1 NC_020163.1 COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (uracil-5-)-methyltransferase 130261 14480113 APECO78_00625 Escherichia coli APEC O78 tRNA (uracil-5-)-methyltransferase YP_007379311.1 129161 R 1274814 CDS YP_007379312.1 443615456 14480114 130630..132474 1 NC_020163.1 COG4206 Outer membrane cobalamin receptor protein; vitamin B12/cobalamin outer membrane transporter 132474 btuB 14480114 btuB Escherichia coli APEC O78 vitamin B12/cobalamin outer membrane transporter YP_007379312.1 130630 D 1274814 CDS YP_007379313.1 443615457 14480115 132419..133276 1 NC_020163.1 COG0796 Glutamate racemase; glutamate racemase 133276 14480115 APECO78_00635 Escherichia coli APEC O78 glutamate racemase YP_007379313.1 132419 D 1274814 CDS YP_007379314.1 443615458 14484667 138829..139857 1 NC_020163.1 COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase 139857 14484667 APECO78_00640 Escherichia coli APEC O78 UDP-N-acetylenolpyruvoylglucosamine reductase YP_007379314.1 138829 D 1274814 CDS YP_007379315.1 443615459 14480117 139854..140819 1 NC_020163.1 COG1654 Biotin operon repressor; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 140819 14480117 APECO78_00645 Escherichia coli APEC O78 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor YP_007379315.1 139854 D 1274814 CDS YP_007379316.1 443615460 14480118 complement(140848..141798) 1 NC_020163.1 COG1072 Panthothenate kinase; pantothenate kinase 141798 14480118 APECO78_00650 Escherichia coli APEC O78 pantothenate kinase YP_007379316.1 140848 R 1274814 CDS YP_007379317.1 443615461 14484582 142716..143900 1 NC_020163.1 COG0050 GTPases - translation elongation factors; elongation factor Tu 143900 14484582 APECO78_00660 Escherichia coli APEC O78 elongation factor Tu YP_007379317.1 142716 D 1274814 CDS YP_007379318.1 443615462 14480120 144130..144513 1 NC_020163.1 COG0690 Preprotein translocase subunit SecE; preprotein translocase subunit SecE 144513 14480120 APECO78_00665 Escherichia coli APEC O78 preprotein translocase subunit SecE YP_007379318.1 144130 D 1274814 CDS YP_007379319.1 443615463 14480121 144515..145060 1 NC_020163.1 COG0250 Transcription antiterminator; transcription antitermination protein NusG 145060 14480121 APECO78_00670 Escherichia coli APEC O78 transcription antitermination protein NusG YP_007379319.1 144515 D 1274814 CDS YP_007379320.1 443615464 14480122 145219..145647 1 NC_020163.1 COG0080 Ribosomal protein L11; 50S ribosomal protein L11 145647 14480122 APECO78_00675 Escherichia coli APEC O78 50S ribosomal protein L11 YP_007379320.1 145219 D 1274814 CDS YP_007379321.1 443615465 14480123 145651..146355 1 NC_020163.1 COG0081 Ribosomal protein L1; 50S ribosomal protein L1 146355 14480123 APECO78_00680 Escherichia coli APEC O78 50S ribosomal protein L1 YP_007379321.1 145651 D 1274814 CDS YP_007379322.1 443615466 14480124 146768..147265 1 NC_020163.1 COG0244 Ribosomal protein L10; 50S ribosomal protein L10 147265 14480124 APECO78_00685 Escherichia coli APEC O78 50S ribosomal protein L10 YP_007379322.1 146768 D 1274814 CDS YP_007379323.1 443615467 14480125 147332..147697 1 NC_020163.1 COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 147697 14480125 APECO78_00690 Escherichia coli APEC O78 50S ribosomal protein L7/L12 YP_007379323.1 147332 D 1274814 CDS YP_007379324.1 443615468 14480126 148017..152045 1 NC_020163.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta 152045 14480126 APECO78_00695 Escherichia coli APEC O78 DNA-directed RNA polymerase subunit beta YP_007379324.1 148017 D 1274814 CDS YP_007379325.1 443615469 14480127 152122..156345 1 NC_020163.1 COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-directed RNA polymerase subunit beta' 156345 14480127 APECO78_00700 Escherichia coli APEC O78 DNA-directed RNA polymerase subunit beta' YP_007379325.1 152122 D 1274814 CDS YP_007379326.1 443615470 14480128 156558..157097 1 NC_020163.1 stationary phase growth adaptation protein 157097 14480128 APECO78_00705 Escherichia coli APEC O78 stationary phase growth adaptation protein YP_007379326.1 156558 D 1274814 CDS YP_007379327.1 443615471 14480129 complement(157507..158640) 1 NC_020163.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; thiamine biosynthesis protein ThiH 158640 14480129 APECO78_00710 Escherichia coli APEC O78 thiamine biosynthesis protein ThiH YP_007379327.1 157507 R 1274814 CDS YP_007379328.1 443615472 14480130 complement(158637..159407) 1 NC_020163.1 COG2022 Uncharacterized enzyme of thiazole biosynthesis; thiazole biosynthesis protein 159407 14480130 APECO78_00715 Escherichia coli APEC O78 thiazole biosynthesis protein YP_007379328.1 158637 R 1274814 CDS YP_007379329.1 443615473 14480131 complement(159409..159609) 1 NC_020163.1 COG2104 Sulfur transfer protein involved in thiamine biosynthesis; sulfur carrier protein ThiS 159609 14480131 APECO78_00720 Escherichia coli APEC O78 sulfur carrier protein ThiS YP_007379329.1 159409 R 1274814 CDS YP_007379330.1 443615474 14480132 complement(159593..160348) 1 NC_020163.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; thiamin biosynthesis protein ThiF 160348 14480132 APECO78_00725 Escherichia coli APEC O78 thiamin biosynthesis protein ThiF YP_007379330.1 159593 R 1274814 CDS YP_007379331.1 443615475 14480133 complement(160341..160976) 1 NC_020163.1 COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 160976 14480133 APECO78_00730 Escherichia coli APEC O78 thiamine-phosphate pyrophosphorylase YP_007379331.1 160341 R 1274814 CDS YP_007379332.1 443615476 14480134 complement(160976..162871) 1 NC_020163.1 COG0422 Thiamine biosynthesis protein ThiC; phosphomethylpyrimidine synthase ThiC 162871 14480134 APECO78_00735 Escherichia coli APEC O78 phosphomethylpyrimidine synthase ThiC YP_007379332.1 160976 R 1274814 CDS YP_007379333.1 443615477 14480135 complement(163104..163580) 1 NC_020163.1 COG3160 Regulator of sigma D; anti-RNA polymerase sigma 70 factor 163580 14480135 APECO78_00740 Escherichia coli APEC O78 anti-RNA polymerase sigma 70 factor YP_007379333.1 163104 R 1274814 CDS YP_007379334.1 443615478 14480136 163675..164448 1 NC_020163.1 COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding; NADH pyrophosphatase 164448 14480136 APECO78_00745 Escherichia coli APEC O78 NADH pyrophosphatase YP_007379334.1 163675 D 1274814 CDS YP_007379335.1 443615479 14480137 164488..165552 1 NC_020163.1 COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 165552 14480137 APECO78_00750 Escherichia coli APEC O78 uroporphyrinogen decarboxylase YP_007379335.1 164488 D 1274814 CDS YP_007379336.1 443615480 14480138 165562..166233 1 NC_020163.1 COG1515 Deoxyinosine 3'endonuclease (endonuclease V); endonuclease V 166233 14480138 APECO78_00755 Escherichia coli APEC O78 endonuclease V YP_007379336.1 165562 D 1274814 CDS YP_007379337.1 443615481 14480139 166276..166866 1 NC_020163.1 COG3068 Uncharacterized protein conserved in bacteria; hypothetical protein 166866 14480139 APECO78_00760 Escherichia coli APEC O78 hypothetical protein YP_007379337.1 166276 D 1274814 CDS YP_007379338.1 443615482 14480140 167053..167325 1 NC_020163.1 COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit alpha 167325 14480140 APECO78_00765 Escherichia coli APEC O78 transcriptional regulator HU subunit alpha YP_007379338.1 167053 D 1274814 CDS YP_007379339.1 443615483 14480141 167338..168033 1 NC_020163.1 hypothetical protein 168033 14480141 APECO78_00770 Escherichia coli APEC O78 hypothetical protein YP_007379339.1 167338 D 1274814 CDS YP_007379340.1 443615484 14480142 complement(168035..168460) 1 NC_020163.1 COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; zinc resistance protein 168460 zraP 14480142 zraP Escherichia coli APEC O78 zinc resistance protein YP_007379340.1 168035 R 1274814 CDS YP_007379341.1 443615485 14480143 168698..170074 1 NC_020163.1 COG0642 Signal transduction histidine kinase; sensor protein ZraS 170074 14480143 APECO78_00780 Escherichia coli APEC O78 sensor protein ZraS YP_007379341.1 168698 D 1274814 CDS YP_007379342.1 443615486 14480144 170071..171396 1 NC_020163.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; transcriptional regulatory protein ZraR 171396 14480144 APECO78_00785 Escherichia coli APEC O78 transcriptional regulatory protein ZraR YP_007379342.1 170071 D 1274814 CDS YP_007379343.1 443615487 14480145 complement(171393..172682) 1 NC_020163.1 COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase 172682 14480145 APECO78_00790 Escherichia coli APEC O78 phosphoribosylamine--glycine ligase YP_007379343.1 171393 R 1274814 CDS YP_007379344.1 443615488 14480146 complement(172694..174283) 1 NC_020163.1 COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 174283 purH 14480146 purH Escherichia coli APEC O78 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_007379344.1 172694 R 1274814 CDS YP_007379345.1 443615489 14484668 180079..180462 1 NC_020163.1 COG1077 Actin-like ATPase involved in cell morphogenesis; hypothetical protein 180462 14484668 APECO78_00800 Escherichia coli APEC O78 hypothetical protein YP_007379345.1 180079 D 1274814 CDS YP_007379346.1 443615490 14480148 complement(180525..180968) 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 180968 14480148 APECO78_00805 Escherichia coli APEC O78 acetyltransferase YP_007379346.1 180525 R 1274814 CDS YP_007379347.1 443615491 14480149 181125..182054 1 NC_020163.1 COG1897 Homoserine trans-succinylase; homoserine O-succinyltransferase 182054 14480149 APECO78_00810 Escherichia coli APEC O78 homoserine O-succinyltransferase YP_007379347.1 181125 D 1274814 CDS YP_007379348.1 443615492 14480150 182323..183924 1 NC_020163.1 COG2225 Malate synthase; malate synthase 183924 14480150 APECO78_00815 Escherichia coli APEC O78 malate synthase YP_007379348.1 182323 D 1274814 CDS YP_007379349.1 443615493 14480151 183954..185258 1 NC_020163.1 COG2224 Isocitrate lyase; isocitrate lyase 185258 14480151 APECO78_00820 Escherichia coli APEC O78 isocitrate lyase YP_007379349.1 183954 D 1274814 CDS YP_007379350.1 443615494 14480152 185539..187275 1 NC_020163.1 COG4579 Isocitrate dehydrogenase kinase/phosphatase; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 187275 aceK 14480152 aceK Escherichia coli APEC O78 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_007379350.1 185539 D 1274814 CDS YP_007379351.1 443615495 14480153 complement(187244..188818) 1 NC_020163.1 T3SS effector-like protein EspL 188818 14480153 APECO78_00830 Escherichia coli APEC O78 T3SS effector-like protein EspL YP_007379351.1 187244 R 1274814 CDS YP_007379352.1 443615496 14480154 complement(189135..189959) 1 NC_020163.1 COG1414 Transcriptional regulator; Acetate operon repressor 189959 14480154 APECO78_00835 Escherichia coli APEC O78 Acetate operon repressor YP_007379352.1 189135 R 1274814 CDS YP_007379353.1 443615497 14480155 190159..193842 1 NC_020163.1 COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain; B12-dependent methionine synthase 193842 metH 14480155 metH Escherichia coli APEC O78 B12-dependent methionine synthase YP_007379353.1 190159 D 1274814 CDS YP_007379354.1 443615498 14480156 194062..195693 1 NC_020163.1 COG1283 Na+/phosphate symporter; transporter 195693 14480156 APECO78_00845 Escherichia coli APEC O78 transporter YP_007379354.1 194062 D 1274814 CDS YP_007379355.1 443615499 14480157 complement(195784..196473) 1 NC_020163.1 COG3340 Peptidase E; (alpha)-aspartyl dipeptidase 196473 14480157 APECO78_00850 Escherichia coli APEC O78 (alpha)-aspartyl dipeptidase YP_007379355.1 195784 R 1274814 CDS YP_007379356.1 443615500 14480158 196581..196736 1 NC_020163.1 hypothetical protein 196736 14480158 APECO78_00855 Escherichia coli APEC O78 hypothetical protein YP_007379356.1 196581 D 1274814 CDS YP_007379357.1 443615501 14480159 complement(196856..198085) 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; putative L-sorbose 1-phosphate dehydrogenase 198085 14480159 APECO78_00860 Escherichia coli APEC O78 putative L-sorbose 1-phosphate dehydrogenase YP_007379357.1 196856 R 1274814 CDS YP_007379358.1 443615502 14480160 complement(198137..198961) 1 NC_020163.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; sorbose permease IID component 198961 14480160 APECO78_00865 Escherichia coli APEC O78 sorbose permease IID component YP_007379358.1 198137 R 1274814 CDS YP_007379359.1 443615503 14480161 complement(198972..199769) 1 NC_020163.1 COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system mannose-specific transporter subunit IIC 199769 14480161 APECO78_00870 Escherichia coli APEC O78 PTS system mannose-specific transporter subunit IIC YP_007379359.1 198972 R 1274814 CDS YP_007379360.1 443615504 14480162 complement(199835..200329) 1 NC_020163.1 COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; sorbose-specific PTS system EIIB component 200329 14480162 APECO78_00875 Escherichia coli APEC O78 sorbose-specific PTS system EIIB component YP_007379360.1 199835 R 1274814 CDS YP_007379361.1 443615505 14480163 complement(200329..200736) 1 NC_020163.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; sorbose-permease PTS system IIA component 200736 14480163 APECO78_00880 Escherichia coli APEC O78 sorbose-permease PTS system IIA component YP_007379361.1 200329 R 1274814 CDS YP_007379362.1 443615506 14480164 complement(200746..201552) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); sorbitol-6-phosphate 2-dehydrogenase 201552 14480164 APECO78_00885 Escherichia coli APEC O78 sorbitol-6-phosphate 2-dehydrogenase YP_007379362.1 200746 R 1274814 CDS YP_007379363.1 443615507 14480165 complement(201622..202569) 1 NC_020163.1 COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; sor-operon regulator 202569 14480165 APECO78_00890 Escherichia coli APEC O78 sor-operon regulator YP_007379363.1 201622 R 1274814 CDS YP_007379364.1 443615508 14480166 202917..203789 1 NC_020163.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase F 203789 14480166 APECO78_00895 Escherichia coli APEC O78 23S rRNA pseudouridine synthase F YP_007379364.1 202917 D 1274814 CDS YP_007379365.1 443615509 14480167 complement(203790..204062) 1 NC_020163.1 hypothetical protein 204062 14480167 APECO78_00900 Escherichia coli APEC O78 hypothetical protein YP_007379365.1 203790 R 1274814 CDS YP_007379366.1 443615510 14480168 204592..205719 1 NC_020163.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 205719 14480168 APECO78_00905 Escherichia coli APEC O78 hypothetical protein YP_007379366.1 204592 D 1274814 CDS YP_007379367.1 443615511 14480169 205716..206516 1 NC_020163.1 COG3541 Predicted nucleotidyltransferase; hypothetical protein 206516 14480169 APECO78_00910 Escherichia coli APEC O78 hypothetical protein YP_007379367.1 205716 D 1274814 CDS YP_007379368.1 443615512 14480170 complement(206552..207478) 1 NC_020163.1 COG0464 ATPases of the AAA+ class; putative zeta toxin; poison-antidote element 207478 14480170 APECO78_00915 Escherichia coli APEC O78 putative zeta toxin; poison-antidote element YP_007379368.1 206552 R 1274814 CDS YP_007379369.1 443615513 14480171 complement(207623..208972) 1 NC_020163.1 COG0527 Aspartokinases; aspartate kinase III 208972 14480171 APECO78_00920 Escherichia coli APEC O78 aspartate kinase III YP_007379369.1 207623 R 1274814 CDS YP_007379370.1 443615514 14480172 209497..211146 1 NC_020163.1 COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 211146 14480172 APECO78_00925 Escherichia coli APEC O78 glucose-6-phosphate isomerase YP_007379370.1 209497 D 1274814 CDS YP_007379371.1 443615515 14480173 211501..211743 1 NC_020163.1 hypothetical protein 211743 14480173 APECO78_00930 Escherichia coli APEC O78 hypothetical protein YP_007379371.1 211501 D 1274814 CDS YP_007379372.1 443615516 14480174 211857..212495 1 NC_020163.1 hypothetical protein 212495 14480174 APECO78_00935 Escherichia coli APEC O78 hypothetical protein YP_007379372.1 211857 D 1274814 CDS YP_007379373.1 443615517 14480175 212492..213229 1 NC_020163.1 hypothetical protein 213229 14480175 APECO78_00940 Escherichia coli APEC O78 hypothetical protein YP_007379373.1 212492 D 1274814 CDS YP_007379374.1 443615518 14480176 213229..215325 1 NC_020163.1 porin 215325 14480176 APECO78_00945 Escherichia coli APEC O78 porin YP_007379374.1 213229 D 1274814 CDS YP_007379375.1 443615519 14480177 complement(215372..215650) 1 NC_020163.1 hypothetical protein 215650 14480177 APECO78_00950 Escherichia coli APEC O78 hypothetical protein YP_007379375.1 215372 R 1274814 CDS YP_007379376.1 443615520 14480178 215651..215794 1 NC_020163.1 hypothetical protein 215794 14480178 APECO78_00955 Escherichia coli APEC O78 hypothetical protein YP_007379376.1 215651 D 1274814 CDS YP_007379377.1 443615521 14480179 215920..216330 1 NC_020163.1 COG3223 Predicted membrane protein; phosphate-starvation-inducible protein PsiE 216330 14480179 APECO78_00960 Escherichia coli APEC O78 phosphate-starvation-inducible protein PsiE YP_007379377.1 215920 D 1274814 CDS YP_007379378.1 443615522 14480180 complement(216374..217849) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; D-xylose transporter XylE 217849 14480180 APECO78_00965 Escherichia coli APEC O78 D-xylose transporter XylE YP_007379378.1 216374 R 1274814 CDS YP_007379379.1 443615523 14480181 complement(218221..219111) 1 NC_020163.1 COG3833 ABC-type maltose transport systems, permease component; maltose transporter permease 219111 14480181 APECO78_00970 Escherichia coli APEC O78 maltose transporter permease YP_007379379.1 218221 R 1274814 CDS YP_007379380.1 443615524 14480182 complement(219126..220670) 1 NC_020163.1 COG1175 ABC-type sugar transport systems, permease components; maltose transport system permease protein malF 220670 14480182 APECO78_00975 Escherichia coli APEC O78 maltose transport system permease protein malF YP_007379380.1 219126 R 1274814 CDS YP_007379381.1 443615525 14480183 complement(220824..222014) 1 NC_020163.1 COG2182 Maltose-binding periplasmic proteins/domains; maltose ABC transporter substrate-binding protein 222014 14480183 APECO78_00980 Escherichia coli APEC O78 maltose ABC transporter substrate-binding protein YP_007379381.1 220824 R 1274814 CDS YP_007379382.1 443615526 14480184 complement(222107..222202) 1 NC_020163.1 hypothetical protein 222202 14480184 APECO78_00985 Escherichia coli APEC O78 hypothetical protein YP_007379382.1 222107 R 1274814 CDS YP_007379383.1 443615527 14480185 222379..223494 1 NC_020163.1 COG3839 ABC-type sugar transport systems, ATPase components; maltose/maltodextrin transporter ATP-binding protein 223494 14480185 APECO78_00990 Escherichia coli APEC O78 maltose/maltodextrin transporter ATP-binding protein YP_007379383.1 222379 D 1274814 CDS YP_007379384.1 443615528 14480186 223566..224906 1 NC_020163.1 COG4580 Maltoporin (phage lambda and maltose receptor); maltoporin 224906 lamB 14480186 lamB Escherichia coli APEC O78 maltoporin YP_007379384.1 223566 D 1274814 CDS YP_007379385.1 443615529 14480187 225149..226069 1 NC_020163.1 maltose regulon periplasmic protein 226069 14480187 APECO78_01000 Escherichia coli APEC O78 maltose regulon periplasmic protein YP_007379385.1 225149 D 1274814 CDS YP_007379386.1 443615530 14480188 226298..226492 1 NC_020163.1 hypothetical protein 226492 14480188 APECO78_01005 Escherichia coli APEC O78 hypothetical protein YP_007379386.1 226298 D 1274814 CDS YP_007379387.1 443615531 14480189 226550..227878 1 NC_020163.1 COG1357 Uncharacterized low-complexity proteins; hypothetical protein 227878 14480189 APECO78_01010 Escherichia coli APEC O78 hypothetical protein YP_007379387.1 226550 D 1274814 CDS YP_007379388.1 443615532 14480190 228101..228598 1 NC_020163.1 COG3161 4-hydroxybenzoate synthetase (chorismate lyase); chorismate pyruvate lyase 228598 ubiC 14480190 ubiC Escherichia coli APEC O78 chorismate pyruvate lyase YP_007379388.1 228101 D 1274814 CDS YP_007379389.1 443615533 14480191 228611..229483 1 NC_020163.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; 4-hydroxybenzoate octaprenyltransferase 229483 ubiA 14480191 ubiA Escherichia coli APEC O78 4-hydroxybenzoate octaprenyltransferase YP_007379389.1 228611 D 1274814 CDS YP_007379390.1 443615534 14480192 complement(229638..232061) 1 NC_020163.1 COG2937 Glycerol-3-phosphate O-acyltransferase; glycerol-3-phosphate acyltransferase 232061 14480192 APECO78_01025 Escherichia coli APEC O78 glycerol-3-phosphate acyltransferase YP_007379390.1 229638 R 1274814 CDS YP_007379391.1 443615535 14480193 232232..232600 1 NC_020163.1 COG0818 Diacylglycerol kinase; diacylglycerol kinase 232600 14480193 APECO78_01030 Escherichia coli APEC O78 diacylglycerol kinase YP_007379391.1 232232 D 1274814 CDS YP_007379392.1 443615536 14480194 232710..233318 1 NC_020163.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); LexA repressor 233318 14480194 APECO78_01035 Escherichia coli APEC O78 LexA repressor YP_007379392.1 232710 D 1274814 CDS YP_007379393.1 443615537 14480195 233391..234716 1 NC_020163.1 COG0534 Na+-driven multidrug efflux pump; DNA-damage-inducible transport protein 234716 14480195 APECO78_01040 Escherichia coli APEC O78 DNA-damage-inducible transport protein YP_007379393.1 233391 D 1274814 CDS YP_007379394.1 443615538 14480196 234832..235041 1 NC_020163.1 COG3237 Uncharacterized protein conserved in bacteria; putative general stress response protein 235041 14480196 APECO78_01045 Escherichia coli APEC O78 putative general stress response protein YP_007379394.1 234832 D 1274814 CDS YP_007379395.1 443615539 14480197 complement(235083..235598) 1 NC_020163.1 COG0735 Fe2+/Zn2+ uptake regulation proteins; zinc uptake transcriptional repressor 235598 14480197 APECO78_01050 Escherichia coli APEC O78 zinc uptake transcriptional repressor YP_007379395.1 235083 R 1274814 CDS YP_007379396.1 443615540 14480198 236225..236932 1 NC_020163.1 hypothetical protein 236932 14480198 APECO78_01055 Escherichia coli APEC O78 hypothetical protein YP_007379396.1 236225 D 1274814 CDS YP_007379397.1 443615541 14480199 237289..237417 1 NC_020163.1 phage protein 237417 14480199 APECO78_01060 Escherichia coli APEC O78 phage protein YP_007379397.1 237289 D 1274814 CDS YP_007379398.1 443615542 14480200 237704..238177 1 NC_020163.1 COG3600 Uncharacterized phage-associated protein; phage protein 238177 14480200 APECO78_01065 Escherichia coli APEC O78 phage protein YP_007379398.1 237704 D 1274814 CDS YP_007379399.1 443615543 14480201 238200..238748 1 NC_020163.1 hypothetical protein 238748 14480201 APECO78_01070 Escherichia coli APEC O78 hypothetical protein YP_007379399.1 238200 D 1274814 CDS YP_007379400.1 443615544 14480202 complement(238782..239051) 1 NC_020163.1 hypothetical protein 239051 14480202 APECO78_01075 Escherichia coli APEC O78 hypothetical protein YP_007379400.1 238782 R 1274814 CDS YP_007379401.1 443615545 14480203 complement(239088..239870) 1 NC_020163.1 hypothetical protein 239870 14480203 APECO78_01080 Escherichia coli APEC O78 hypothetical protein YP_007379401.1 239088 R 1274814 CDS YP_007379402.1 443615546 14480204 complement(240057..240881) 1 NC_020163.1 COG5532 Uncharacterized conserved protein; hypothetical protein 240881 14480204 APECO78_01085 Escherichia coli APEC O78 hypothetical protein YP_007379402.1 240057 R 1274814 CDS YP_007379403.1 443615547 14480205 complement(240946..241308) 1 NC_020163.1 hypothetical protein 241308 14480205 APECO78_01090 Escherichia coli APEC O78 hypothetical protein YP_007379403.1 240946 R 1274814 CDS YP_007379404.1 443615548 14480206 complement(241975..242649) 1 NC_020163.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); phage repressor protein 242649 14480206 APECO78_01095 Escherichia coli APEC O78 phage repressor protein YP_007379404.1 241975 R 1274814 CDS YP_007379405.1 443615549 14480207 242740..242961 1 NC_020163.1 DNA-binding transcriptional regulator 242961 14480207 APECO78_01100 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007379405.1 242740 D 1274814 CDS YP_007379406.1 443615550 14480208 243065..243664 1 NC_020163.1 hypothetical protein 243664 14480208 APECO78_01105 Escherichia coli APEC O78 hypothetical protein YP_007379406.1 243065 D 1274814 CDS YP_007379407.1 443615551 14480209 243729..247070 1 NC_020163.1 hypothetical protein 247070 14480209 APECO78_01110 Escherichia coli APEC O78 hypothetical protein YP_007379407.1 243729 D 1274814 CDS YP_007379408.1 443615552 14480210 247266..247400 1 NC_020163.1 hypothetical protein 247400 14480210 APECO78_01115 Escherichia coli APEC O78 hypothetical protein YP_007379408.1 247266 D 1274814 CDS YP_007379409.1 443615553 14480211 complement(248855..249406) 1 NC_020163.1 hypothetical protein 249406 14480211 APECO78_01130 Escherichia coli APEC O78 hypothetical protein YP_007379409.1 248855 R 1274814 CDS YP_007379410.1 443615554 14480212 249719..250084 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 250084 14480212 APECO78_01135 Escherichia coli APEC O78 IS2 repressor TnpA YP_007379410.1 249719 D 1274814 CDS YP_007379411.1 443615555 14480213 250042..250947 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 250947 14480213 APECO78_01140 Escherichia coli APEC O78 IS2 transposase TnpB YP_007379411.1 250042 D 1274814 CDS YP_007379412.1 443615556 14480214 complement(250964..251212) 1 NC_020163.1 DNA-damage-inducible protein 251212 14480214 APECO78_01145 Escherichia coli APEC O78 DNA-damage-inducible protein YP_007379412.1 250964 R 1274814 CDS YP_007379413.1 443615557 14480215 complement(251273..252370) 1 NC_020163.1 COG0582 Integrase; phage integrase 252370 14480215 APECO78_01150 Escherichia coli APEC O78 phage integrase YP_007379413.1 251273 R 1274814 CDS YP_007379414.1 443615558 14480216 252459..253496 1 NC_020163.1 COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase A 253496 14480216 APECO78_01155 Escherichia coli APEC O78 tRNA-dihydrouridine synthase A YP_007379414.1 252459 D 1274814 CDS YP_007379415.1 443615559 14480217 253630..253872 1 NC_020163.1 phage shock protein G 253872 pspG 14480217 pspG Escherichia coli APEC O78 phage shock protein G YP_007379415.1 253630 D 1274814 CDS YP_007379416.1 443615560 14480218 complement(254038..255021) 1 NC_020163.1 COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase, NADPH-dependent 255021 14480218 APECO78_01165 Escherichia coli APEC O78 quinone oxidoreductase, NADPH-dependent YP_007379416.1 254038 R 1274814 CDS YP_007379417.1 443615561 14480219 255104..256519 1 NC_020163.1 COG0305 Replicative DNA helicase; replicative DNA helicase 256519 14480219 APECO78_01170 Escherichia coli APEC O78 replicative DNA helicase YP_007379417.1 255104 D 1274814 CDS YP_007379418.1 443615562 14480220 256572..257651 1 NC_020163.1 COG0787 Alanine racemase; alanine racemase 257651 14480220 APECO78_01175 Escherichia coli APEC O78 alanine racemase YP_007379418.1 256572 D 1274814 CDS YP_007379419.1 443615563 14480221 257904..259097 1 NC_020163.1 COG1448 Aspartate/tyrosine/aromatic aminotransferase; tyrosine aminotransferase TyrB, tyrosine-repressible, PLP-dependent 259097 14480221 APECO78_01180 Escherichia coli APEC O78 tyrosine aminotransferase TyrB, tyrosine-repressible, PLP-dependent YP_007379419.1 257904 D 1274814 CDS YP_007379420.1 443615564 14480222 complement(259319..259822) 1 NC_020163.1 hypothetical protein 259822 14480222 APECO78_01185 Escherichia coli APEC O78 hypothetical protein YP_007379420.1 259319 R 1274814 CDS YP_007379421.1 443615565 14480223 260224..260937 1 NC_020163.1 COG3700 Acid phosphatase (class B); acid phosphatase/phosphotransferase 260937 aphA 14480223 aphA Escherichia coli APEC O78 acid phosphatase/phosphotransferase YP_007379421.1 260224 D 1274814 CDS YP_007379422.1 443615566 14480224 261048..261464 1 NC_020163.1 COG0432 Uncharacterized conserved protein; hypothetical protein 261464 14480224 APECO78_01195 Escherichia coli APEC O78 hypothetical protein YP_007379422.1 261048 D 1274814 CDS YP_007379423.1 443615567 14480225 261468..261824 1 NC_020163.1 COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein 261824 14480225 APECO78_01200 Escherichia coli APEC O78 hypothetical protein YP_007379423.1 261468 D 1274814 CDS YP_007379424.1 443615568 14480226 complement(261859..264681) 1 NC_020163.1 COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A 264681 uvrA 14480226 uvrA Escherichia coli APEC O78 excinuclease ABC subunit A YP_007379424.1 261859 R 1274814 CDS YP_007379425.1 443615569 14480227 264935..265471 1 NC_020163.1 COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 265471 14480227 APECO78_01210 Escherichia coli APEC O78 single-stranded DNA-binding protein YP_007379425.1 264935 D 1274814 CDS YP_007379426.1 443615570 14480228 complement(265570..265851) 1 NC_020163.1 hypothetical protein 265851 14480228 APECO78_01215 Escherichia coli APEC O78 hypothetical protein YP_007379426.1 265570 R 1274814 CDS YP_007379427.1 443615571 14480229 266281..267867 1 NC_020163.1 COG4943 Predicted signal transduction protein containing sensor and EAL domains; hypothetical protein 267867 14480229 APECO78_01220 Escherichia coli APEC O78 hypothetical protein YP_007379427.1 266281 D 1274814 CDS YP_007379428.1 443615572 14480230 complement(267870..268193) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator SoxS 268193 14480230 APECO78_01225 Escherichia coli APEC O78 DNA-binding transcriptional regulator SoxS YP_007379428.1 267870 R 1274814 CDS YP_007379429.1 443615573 14480231 268279..268743 1 NC_020163.1 COG0789 Predicted transcriptional regulators; redox-sensitivie transcriptional activator Soxr 268743 14480231 APECO78_01230 Escherichia coli APEC O78 redox-sensitivie transcriptional activator Soxr YP_007379429.1 268279 D 1274814 CDS YP_007379430.1 443615574 14480232 269289..270638 1 NC_020163.1 COG2252 Permeases; hypothetical protein 270638 14480232 APECO78_01235 Escherichia coli APEC O78 hypothetical protein YP_007379430.1 269289 D 1274814 CDS YP_007379431.1 443615575 14480233 270789..272438 1 NC_020163.1 COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; cation/proton antiporter 272438 14480233 APECO78_01240 Escherichia coli APEC O78 cation/proton antiporter YP_007379431.1 270789 D 1274814 CDS YP_007379432.1 443615576 14480234 complement(272592..273884) 1 NC_020163.1 COG1357 Uncharacterized low-complexity proteins; hypothetical protein 273884 14480234 APECO78_01245 Escherichia coli APEC O78 hypothetical protein YP_007379432.1 272592 R 1274814 CDS YP_007379433.1 443615577 14480235 complement(274062..275711) 1 NC_020163.1 COG4147 Predicted symporter; acetate permease 275711 actP 14480235 actP Escherichia coli APEC O78 acetate permease YP_007379433.1 274062 R 1274814 CDS YP_007379434.1 443615578 14480236 complement(275708..276022) 1 NC_020163.1 COG3162 Predicted membrane protein; hypothetical protein 276022 14480236 APECO78_01255 Escherichia coli APEC O78 hypothetical protein YP_007379434.1 275708 R 1274814 CDS YP_007379435.1 443615579 14480237 complement(276223..278181) 1 NC_020163.1 COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; acetyl-CoA synthetase 278181 14480237 APECO78_01260 Escherichia coli APEC O78 acetyl-CoA synthetase YP_007379435.1 276223 R 1274814 CDS YP_007379436.1 443615580 14480238 278573..280009 1 NC_020163.1 COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; cytochrome c nitrite reductase subunit c552 280009 14480238 APECO78_01265 Escherichia coli APEC O78 cytochrome c nitrite reductase subunit c552 YP_007379436.1 278573 D 1274814 CDS YP_007379437.1 443615581 14480239 280054..280620 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; cytochrome c nitrite reductase pentaheme subunit 280620 14480239 APECO78_01270 Escherichia coli APEC O78 cytochrome c nitrite reductase pentaheme subunit YP_007379437.1 280054 D 1274814 CDS YP_007379438.1 443615582 14480240 280617..281288 1 NC_020163.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; formate-dependent nitrite reductase 281288 14480240 APECO78_01275 Escherichia coli APEC O78 formate-dependent nitrite reductase YP_007379438.1 280617 D 1274814 CDS YP_007379439.1 443615583 14480241 281285..282241 1 NC_020163.1 COG3301 Formate-dependent nitrite reductase, membrane component; formate-dependent nitrite reductase complex subunit NrfD 282241 14480241 APECO78_01280 Escherichia coli APEC O78 formate-dependent nitrite reductase complex subunit NrfD YP_007379439.1 281285 D 1274814 CDS YP_007379440.1 443615584 14480242 282321..283979 1 NC_020163.1 COG1138 Cytochrome c biogenesis factor; heme lyase subunit NrfE 283979 14480242 APECO78_01285 Escherichia coli APEC O78 heme lyase subunit NrfE YP_007379440.1 282321 D 1274814 CDS YP_007379441.1 443615585 14480243 283972..284355 1 NC_020163.1 COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; formate-dependent nitrite reductase complex subunit NrfF 284355 14480243 APECO78_01290 Escherichia coli APEC O78 formate-dependent nitrite reductase complex subunit NrfF YP_007379441.1 283972 D 1274814 CDS YP_007379442.1 443615586 14480244 284352..284948 1 NC_020163.1 COG4235 Cytochrome c biogenesis factor; formate-dependent nitrite reductase complex subunit NrfG 284948 14480244 APECO78_01295 Escherichia coli APEC O78 formate-dependent nitrite reductase complex subunit NrfG YP_007379442.1 284352 D 1274814 CDS YP_007379443.1 443615587 14480245 285290..286603 1 NC_020163.1 COG1301 Na+/H+-dicarboxylate symporters; glutamate/aspartate:proton symporter 286603 14480245 APECO78_01300 Escherichia coli APEC O78 glutamate/aspartate:proton symporter YP_007379443.1 285290 D 1274814 CDS YP_007379444.1 443615588 14480246 complement(286681..287370) 1 NC_020163.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 287370 14480246 APECO78_01305 Escherichia coli APEC O78 hypothetical protein YP_007379444.1 286681 R 1274814 CDS YP_007379445.1 443615589 14480247 complement(287464..289143) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-H subunit alpha 289143 14480247 APECO78_01310 Escherichia coli APEC O78 formate dehydrogenase-H subunit alpha YP_007379445.1 287464 R 1274814 CDS YP_007379446.1 443615590 14480248 complement(289192..289611) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-H, selenopolypeptide subunit 289611 14480248 APECO78_01315 Escherichia coli APEC O78 formate dehydrogenase-H, selenopolypeptide subunit YP_007379446.1 289192 R 1274814 CDS YP_007379447.1 443615591 14480249 complement(289809..291275) 1 NC_020163.1 COG1538 Outer membrane protein; outer membrane efflux protein MdtP 291275 14480249 APECO78_01320 Escherichia coli APEC O78 outer membrane efflux protein MdtP YP_007379447.1 289809 R 1274814 CDS YP_007379448.1 443615592 14480250 complement(291272..293323) 1 NC_020163.1 COG1289 Predicted membrane protein; multidrug efflux system protein MdtO 293323 14480250 APECO78_01325 Escherichia coli APEC O78 multidrug efflux system protein MdtO YP_007379448.1 291272 R 1274814 CDS YP_007379449.1 443615593 14480251 complement(293323..294354) 1 NC_020163.1 COG1566 Multidrug resistance efflux pump; multidrug resistance protein MdtN 294354 14480251 APECO78_01330 Escherichia coli APEC O78 multidrug resistance protein MdtN YP_007379449.1 293323 R 1274814 CDS YP_007379450.1 443615594 14480252 complement(294373..294648) 1 NC_020163.1 formate dehydrogenase H 294648 14480252 APECO78_01335 Escherichia coli APEC O78 formate dehydrogenase H YP_007379450.1 294373 R 1274814 CDS YP_007379451.1 443615595 14480253 complement(294857..296842) 1 NC_020163.1 COG2015 Alkyl sulfatase and related hydrolases; hypothetical protein 296842 14480253 APECO78_01340 Escherichia coli APEC O78 hypothetical protein YP_007379451.1 294857 R 1274814 CDS YP_007379452.1 443615596 14480254 complement(297115..298044) 1 NC_020163.1 COG1940 Transcriptional regulator/sugar kinase; D-allose kinase 298044 14480254 APECO78_01345 Escherichia coli APEC O78 D-allose kinase YP_007379452.1 297115 R 1274814 CDS YP_007379453.1 443615597 14480255 complement(298028..298723) 1 NC_020163.1 COG0036 Pentose-5-phosphate-3-epimerase; allulose-6-phosphate 3-epimerase 298723 14480255 APECO78_01350 Escherichia coli APEC O78 allulose-6-phosphate 3-epimerase YP_007379453.1 298028 R 1274814 CDS YP_007379454.1 443615598 14480256 complement(298734..299714) 1 NC_020163.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; D-allose transporter subunit 299714 14480256 APECO78_01355 Escherichia coli APEC O78 D-allose transporter subunit YP_007379454.1 298734 R 1274814 CDS YP_007379455.1 443615599 14480257 complement(299693..301225) 1 NC_020163.1 COG1129 ABC-type sugar transport system, ATPase component; D-allose transporter ATP-binding protein 301225 14480257 APECO78_01360 Escherichia coli APEC O78 D-allose transporter ATP-binding protein YP_007379455.1 299693 R 1274814 CDS YP_007379456.1 443615600 14480258 complement(301352..302287) 1 NC_020163.1 COG1879 ABC-type sugar transport system, periplasmic component; D-allose transporter subunit 302287 14480258 APECO78_01365 Escherichia coli APEC O78 D-allose transporter subunit YP_007379456.1 301352 R 1274814 CDS YP_007379457.1 443615601 14480259 complement(302346..303236) 1 NC_020163.1 COG1737 Transcriptional regulators; DNA-binding transcriptional repressor RpiR 303236 14480259 APECO78_01370 Escherichia coli APEC O78 DNA-binding transcriptional repressor RpiR YP_007379457.1 302346 R 1274814 CDS YP_007379458.1 443615602 14480260 303596..304045 1 NC_020163.1 COG0698 Ribose 5-phosphate isomerase RpiB; ribose-5-phosphate isomerase B 304045 14480260 APECO78_01375 Escherichia coli APEC O78 ribose-5-phosphate isomerase B YP_007379458.1 303596 D 1274814 CDS YP_007379459.1 443615603 14480261 304114..304443 1 NC_020163.1 hypothetical protein 304443 14480261 APECO78_01380 Escherichia coli APEC O78 hypothetical protein YP_007379459.1 304114 D 1274814 CDS YP_007379460.1 443615604 14480262 complement(304590..305348) 1 NC_020163.1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I; carbon-phosphorus lyase complex accessory protein 305348 phnP 14480262 phnP Escherichia coli APEC O78 carbon-phosphorus lyase complex accessory protein YP_007379460.1 304590 R 1274814 CDS YP_007379461.1 443615605 14480263 complement(305350..305784) 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; aminoalkylphosphonic acid N-acetyltransferase 305784 14480263 APECO78_01390 Escherichia coli APEC O78 aminoalkylphosphonic acid N-acetyltransferase YP_007379461.1 305350 R 1274814 CDS YP_007379462.1 443615606 14480264 complement(305771..306328) 1 NC_020163.1 COG3709 Uncharacterized component of phosphonate metabolism; ribose 1,5-bisphosphokinase 306328 14480264 APECO78_01395 Escherichia coli APEC O78 ribose 1,5-bisphosphokinase YP_007379462.1 305771 R 1274814 CDS YP_007379463.1 443615607 14480265 complement(306328..307464) 1 NC_020163.1 COG3454 Metal-dependent hydrolase involved in phosphonate metabolism; phosphonate metabolism protein PhnM 307464 14480265 APECO78_01400 Escherichia coli APEC O78 phosphonate metabolism protein PhnM YP_007379463.1 306328 R 1274814 CDS YP_007379464.1 443615608 14480266 complement(307461..308141) 1 NC_020163.1 COG4778 ABC-type phosphonate transport system, ATPase component; phosphonate transport ATP-binding protein 308141 14480266 APECO78_01405 Escherichia coli APEC O78 phosphonate transport ATP-binding protein YP_007379464.1 307461 R 1274814 CDS YP_007379465.1 443615609 14480267 complement(308318..309076) 1 NC_020163.1 COG4107 ABC-type phosphonate transport system, ATPase component; phosphonate C-P lyase system protein PhnK 309076 phnK 14480267 phnK Escherichia coli APEC O78 phosphonate C-P lyase system protein PhnK YP_007379465.1 308318 R 1274814 CDS YP_007379466.1 443615610 14480268 complement(309073..309918) 1 NC_020163.1 COG3627 Uncharacterized enzyme of phosphonate metabolism; hypothetical protein 309918 14480268 APECO78_01415 Escherichia coli APEC O78 hypothetical protein YP_007379466.1 309073 R 1274814 CDS YP_007379467.1 443615611 14480269 complement(309911..310975) 1 NC_020163.1 COG3626 Uncharacterized enzyme of phosphonate metabolism; carbon-phosphorus lyase complex subunit PhnI 310975 14480269 APECO78_01420 Escherichia coli APEC O78 carbon-phosphorus lyase complex subunit PhnI YP_007379467.1 309911 R 1274814 CDS YP_007379468.1 443615612 14480270 complement(310975..311559) 1 NC_020163.1 COG3625 Uncharacterized enzyme of phosphonate metabolism; carbon-phosphorus lyase complex subunit 311559 phnH 14480270 phnH Escherichia coli APEC O78 carbon-phosphorus lyase complex subunit YP_007379468.1 310975 R 1274814 CDS YP_007379469.1 443615613 14480271 complement(311556..312008) 1 NC_020163.1 COG3624 Uncharacterized enzyme of phosphonate metabolism; carbon-phosphorus lyase complex subunit PhnG 312008 14480271 APECO78_01430 Escherichia coli APEC O78 carbon-phosphorus lyase complex subunit PhnG YP_007379469.1 311556 R 1274814 CDS YP_007379470.1 443615614 14480272 complement(312009..312734) 1 NC_020163.1 COG2188 Transcriptional regulators; phosphonate metabolism transcriptional regulator PhnF 312734 14480272 APECO78_01435 Escherichia coli APEC O78 phosphonate metabolism transcriptional regulator PhnF YP_007379470.1 312009 R 1274814 CDS YP_007379471.1 443615615 14480273 complement(312755..313534) 1 NC_020163.1 COG3639 ABC-type phosphate/phosphonate transport system, permease component; phosphonate ABC transporter permease 313534 14480273 APECO78_01440 Escherichia coli APEC O78 phosphonate ABC transporter permease YP_007379471.1 312755 R 1274814 CDS YP_007379472.1 443615616 14480274 complement(313596..314612) 1 NC_020163.1 COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component; alkylphosphonate ABC transporter periplasmic phosphonates-binding protein 314612 14480274 APECO78_01445 Escherichia coli APEC O78 alkylphosphonate ABC transporter periplasmic phosphonates-binding protein YP_007379472.1 313596 R 1274814 CDS YP_007379473.1 443615617 14480275 complement(314637..315425) 1 NC_020163.1 COG3638 ABC-type phosphate/phosphonate transport system, ATPase component; phosphonate ABC transporter ATPase 315425 14480275 APECO78_01450 Escherichia coli APEC O78 phosphonate ABC transporter ATPase YP_007379473.1 314637 R 1274814 CDS YP_007379474.1 443615618 14480276 complement(315558..316001) 1 NC_020163.1 COG2764 Uncharacterized protein conserved in bacteria; hypothetical protein 316001 14480276 APECO78_01455 Escherichia coli APEC O78 hypothetical protein YP_007379474.1 315558 R 1274814 CDS YP_007379475.1 443615619 14480277 complement(316161..316496) 1 NC_020163.1 COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; PhnA protein 316496 14480277 APECO78_01460 Escherichia coli APEC O78 PhnA protein YP_007379475.1 316161 R 1274814 CDS YP_007379476.1 443615620 14480278 316898..319126 1 NC_020163.1 COG0699 Predicted GTPases (dynamin-related); hypothetical protein 319126 14480278 APECO78_01465 Escherichia coli APEC O78 hypothetical protein YP_007379476.1 316898 D 1274814 CDS YP_007379477.1 443615621 14480279 319123..320001 1 NC_020163.1 hypothetical protein 320001 14480279 APECO78_01470 Escherichia coli APEC O78 hypothetical protein YP_007379477.1 319123 D 1274814 CDS YP_007379478.1 443615622 14480280 320265..321767 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; proline/glycine betaine transporter 321767 14480280 APECO78_01475 Escherichia coli APEC O78 proline/glycine betaine transporter YP_007379478.1 320265 D 1274814 CDS YP_007379479.1 443615623 14480281 321879..321968 1 NC_020163.1 regulator of BasS activity, membrane protein 321968 14480281 APECO78_01480 Escherichia coli APEC O78 regulator of BasS activity, membrane protein YP_007379479.1 321879 D 1274814 CDS YP_007379480.1 443615624 14480282 complement(321944..323035) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; sensor protein BasS/PmrB 323035 14480282 APECO78_01485 Escherichia coli APEC O78 sensor protein BasS/PmrB YP_007379480.1 321944 R 1274814 CDS YP_007379481.1 443615625 14480283 complement(323045..323713) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 323713 14480283 APECO78_01490 Escherichia coli APEC O78 two-component response regulator YP_007379481.1 323045 R 1274814 CDS YP_007379482.1 443615626 14480284 complement(323710..325353) 1 NC_020163.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; Putative sulfatase 325353 14480284 APECO78_01495 Escherichia coli APEC O78 Putative sulfatase YP_007379482.1 323710 R 1274814 CDS YP_007379483.1 443615627 14480285 complement(325457..326794) 1 NC_020163.1 COG0531 Amino acid transporters; arginine:agmatin antiporter 326794 14480285 APECO78_01500 Escherichia coli APEC O78 arginine:agmatin antiporter YP_007379483.1 325457 R 1274814 CDS YP_007379484.1 443615628 14480286 complement(326931..327692) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator AdiY 327692 14480286 APECO78_01505 Escherichia coli APEC O78 DNA-binding transcriptional activator AdiY YP_007379484.1 326931 R 1274814 CDS YP_007379485.1 443615629 14480287 complement(328017..330287) 1 NC_020163.1 COG1982 Arginine/lysine/ornithine decarboxylases; arginine decarboxylase 330287 14480287 APECO78_01510 Escherichia coli APEC O78 arginine decarboxylase YP_007379485.1 328017 R 1274814 CDS YP_007379486.1 443615630 14480288 complement(330483..331391) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator MelR 331391 14480288 APECO78_01515 Escherichia coli APEC O78 DNA-binding transcriptional regulator MelR YP_007379486.1 330483 R 1274814 CDS YP_007379487.1 443615631 14480289 331423..331584 1 NC_020163.1 hypothetical protein 331584 14480289 APECO78_01520 Escherichia coli APEC O78 hypothetical protein YP_007379487.1 331423 D 1274814 CDS YP_007379488.1 443615632 14480290 331674..333029 1 NC_020163.1 COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; alpha-galactosidase 333029 14480290 APECO78_01525 Escherichia coli APEC O78 alpha-galactosidase YP_007379488.1 331674 D 1274814 CDS YP_007379489.1 443615633 14480291 333132..334553 1 NC_020163.1 COG2211 Na+/melibiose symporter and related transporters; melibiose:sodium symporter 334553 14480291 APECO78_01530 Escherichia coli APEC O78 melibiose:sodium symporter YP_007379489.1 333132 D 1274814 CDS YP_007379490.1 443615634 14480292 complement(334692..335321) 1 NC_020163.1 COG3647 Predicted membrane protein; hypothetical protein 335321 14480292 APECO78_01535 Escherichia coli APEC O78 hypothetical protein YP_007379490.1 334692 R 1274814 CDS YP_007379491.1 443615635 14480293 complement(335444..337090) 1 NC_020163.1 COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase FumB 337090 14480293 APECO78_01540 Escherichia coli APEC O78 fumarate hydratase FumB YP_007379491.1 335444 R 1274814 CDS YP_007379492.1 443615636 14480294 complement(337168..338508) 1 NC_020163.1 COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 338508 14480294 APECO78_01545 Escherichia coli APEC O78 anaerobic C4-dicarboxylate transporter YP_007379492.1 337168 R 1274814 CDS YP_007379493.1 443615637 14480295 complement(339079..339798) 1 NC_020163.1 COG4565 Response regulator of citrate/malate metabolism; DNA-binding transcriptional activator DcuR 339798 14480295 APECO78_01550 Escherichia coli APEC O78 DNA-binding transcriptional activator DcuR YP_007379493.1 339079 R 1274814 CDS YP_007379494.1 443615638 14480296 complement(339795..341426) 1 NC_020163.1 COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensory histidine kinase DcuS 341426 14480296 APECO78_01555 Escherichia coli APEC O78 sensory histidine kinase DcuS YP_007379494.1 339795 R 1274814 CDS YP_007379495.1 443615639 14480297 341607..341837 1 NC_020163.1 COG3592 Uncharacterized conserved protein; hypothetical protein 341837 14480297 APECO78_01560 Escherichia coli APEC O78 hypothetical protein YP_007379495.1 341607 D 1274814 CDS YP_007379496.1 443615640 14480298 341849..342121 1 NC_020163.1 COG2388 Predicted acetyltransferase; acyltransferase 342121 14480298 APECO78_01565 Escherichia coli APEC O78 acyltransferase YP_007379496.1 341849 D 1274814 CDS YP_007379497.1 443615641 14480299 342348..342644 1 NC_020163.1 hypothetical protein 342644 14480299 APECO78_01570 Escherichia coli APEC O78 hypothetical protein YP_007379497.1 342348 D 1274814 CDS YP_007379498.1 443615642 14480300 342672..342845 1 NC_020163.1 hypothetical protein 342845 14480300 APECO78_01575 Escherichia coli APEC O78 hypothetical protein YP_007379498.1 342672 D 1274814 CDS YP_007379499.1 443615643 14480301 complement(342964..344481) 1 NC_020163.1 COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA ligase 344481 14480301 APECO78_01580 Escherichia coli APEC O78 lysyl-tRNA ligase YP_007379499.1 342964 R 1274814 CDS YP_007379500.1 443615644 14480302 complement(344718..346175) 1 NC_020163.1 COG3104 Dipeptide/tripeptide permease; transporter 346175 14480302 APECO78_01585 Escherichia coli APEC O78 transporter YP_007379500.1 344718 R 1274814 CDS YP_007379501.1 443615645 14480303 complement(346234..348381) 1 NC_020163.1 COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase CadA 348381 14480303 APECO78_01590 Escherichia coli APEC O78 lysine decarboxylase CadA YP_007379501.1 346234 R 1274814 CDS YP_007379502.1 443615646 14480304 complement(348461..349795) 1 NC_020163.1 COG0531 Amino acid transporters; lysine/cadaverine antiporter 349795 14480304 APECO78_01595 Escherichia coli APEC O78 lysine/cadaverine antiporter YP_007379502.1 348461 R 1274814 CDS YP_007379503.1 443615647 14480305 complement(350161..351141) 1 NC_020163.1 COG0457 FOG: TPR repeat; DNA-binding transcriptional activator CadC 351141 14480305 APECO78_01600 Escherichia coli APEC O78 DNA-binding transcriptional activator CadC YP_007379503.1 350161 R 1274814 CDS YP_007379504.1 443615648 14480306 complement(351192..351698) 1 NC_020163.1 COG3710 DNA-binding winged-HTH domains; DNA-binding transcriptional activator CadC 351698 14480306 APECO78_01605 Escherichia coli APEC O78 DNA-binding transcriptional activator CadC YP_007379504.1 351192 R 1274814 CDS YP_007379505.1 443615649 14484585 352488..352607 1 NC_020163.1 hypothetical protein 352607 14484585 APECO78_01610 Escherichia coli APEC O78 hypothetical protein YP_007379505.1 352488 D 1274814 CDS YP_007379506.1 443615650 14480308 complement(352497..353072) 1 NC_020163.1 COG1309 Transcriptional regulator; transcriptional regulator 353072 14480308 APECO78_01615 Escherichia coli APEC O78 transcriptional regulator YP_007379506.1 352497 R 1274814 CDS YP_007379507.1 443615651 14480309 complement(353109..354806) 1 NC_020163.1 COG4232 Thiol:disulfide interchange protein; thiol:disulfide interchange protein precursor 354806 dipZ 14480309 dipZ Escherichia coli APEC O78 thiol:disulfide interchange protein precursor YP_007379507.1 353109 R 1274814 CDS YP_007379508.1 443615652 14480310 complement(354782..355120) 1 NC_020163.1 COG1324 Uncharacterized protein involved in tolerance to divalent cations; divalent-cation tolerance protein CutA 355120 14480310 APECO78_01625 Escherichia coli APEC O78 divalent-cation tolerance protein CutA YP_007379508.1 354782 R 1274814 CDS YP_007379509.1 443615653 14480311 complement(355236..356537) 1 NC_020163.1 COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 356537 14480311 APECO78_01630 Escherichia coli APEC O78 anaerobic C4-dicarboxylate transporter YP_007379509.1 355236 R 1274814 CDS YP_007379510.1 443615654 14480312 complement(356655..358091) 1 NC_020163.1 COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase 358091 14480312 APECO78_01635 Escherichia coli APEC O78 aspartate ammonia-lyase YP_007379510.1 356655 R 1274814 CDS YP_007379511.1 443615655 14480313 358428..358904 1 NC_020163.1 COG3030 Protein affecting phage T7 exclusion by the F plasmid; phage T7 F exclusion suppressor FxsA 358904 14480313 APECO78_01640 Escherichia coli APEC O78 phage T7 F exclusion suppressor FxsA YP_007379511.1 358428 D 1274814 CDS YP_007379512.1 443615656 14480314 complement(358920..360176) 1 NC_020163.1 COG0531 Amino acid transporters; transporter 360176 14480314 APECO78_01645 Escherichia coli APEC O78 transporter YP_007379512.1 358920 R 1274814 CDS YP_007379513.1 443615657 14480315 360452..360745 1 NC_020163.1 COG0234 Co-chaperonin GroES (HSP10); co-chaperonin GroES 360745 14480315 APECO78_01650 Escherichia coli APEC O78 co-chaperonin GroES YP_007379513.1 360452 D 1274814 CDS YP_007379514.1 443615658 14480316 360789..362435 1 NC_020163.1 COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL 362435 14480316 APECO78_01655 Escherichia coli APEC O78 chaperonin GroEL YP_007379514.1 360789 D 1274814 CDS YP_007379515.1 443615659 14480317 362573..362926 1 NC_020163.1 hypothetical protein 362926 14480317 APECO78_01660 Escherichia coli APEC O78 hypothetical protein YP_007379515.1 362573 D 1274814 CDS YP_007379516.1 443615660 14480318 complement(363119..363988) 1 NC_020163.1 COG5257 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase); hypothetical protein 363988 14480318 APECO78_01665 Escherichia coli APEC O78 hypothetical protein YP_007379516.1 363119 R 1274814 CDS YP_007379517.1 443615661 14480319 complement(364215..364352) 1 NC_020163.1 hypothetical protein 364352 14480319 APECO78_01670 Escherichia coli APEC O78 hypothetical protein YP_007379517.1 364215 R 1274814 CDS YP_007379518.1 443615662 14480320 complement(364383..365411) 1 NC_020163.1 COG1509 Lysine 2,3-aminomutase; KamA family protein 365411 14480320 APECO78_01675 Escherichia coli APEC O78 KamA family protein YP_007379518.1 364383 R 1274814 CDS YP_007379519.1 443615663 14480321 365453..366019 1 NC_020163.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 366019 14480321 APECO78_01680 Escherichia coli APEC O78 elongation factor P YP_007379519.1 365453 D 1274814 CDS YP_007379520.1 443615664 14480322 366071..366196 1 NC_020163.1 entericidin A 366196 14480322 APECO78_01685 Escherichia coli APEC O78 entericidin A YP_007379520.1 366071 D 1274814 CDS YP_007379521.1 443615665 14480323 366307..366453 1 NC_020163.1 COG5510 Predicted small secreted protein; entericidin B membrane lipoprotein 366453 14480323 APECO78_01690 Escherichia coli APEC O78 entericidin B membrane lipoprotein YP_007379521.1 366307 D 1274814 CDS YP_007379522.1 443615666 14480324 366628..366945 1 NC_020163.1 COG2076 Membrane transporters of cations and cationic drugs; small multidrug resistance protein 366945 14480324 APECO78_01695 Escherichia coli APEC O78 small multidrug resistance protein YP_007379522.1 366628 D 1274814 CDS YP_007379523.1 443615667 14480325 complement(366942..367475) 1 NC_020163.1 COG3040 Bacterial lipocalin; outer membrane lipoprotein Blc 367475 14480325 APECO78_01700 Escherichia coli APEC O78 outer membrane lipoprotein Blc YP_007379523.1 366942 R 1274814 CDS YP_007379524.1 443615668 14480326 complement(367564..368697) 1 NC_020163.1 COG1680 Beta-lactamase class C and other penicillin binding proteins; beta-lactamase/D-alanine carboxypeptidase 368697 ampC 14480326 ampC Escherichia coli APEC O78 beta-lactamase/D-alanine carboxypeptidase YP_007379524.1 367564 R 1274814 CDS YP_007379525.1 443615669 14480327 complement(368760..369119) 1 NC_020163.1 COG3080 Fumarate reductase subunit D; fumarate reductase subunit D 369119 14480327 APECO78_01710 Escherichia coli APEC O78 fumarate reductase subunit D YP_007379525.1 368760 R 1274814 CDS YP_007379526.1 443615670 14480328 complement(369130..369525) 1 NC_020163.1 COG3029 Fumarate reductase subunit C; fumarate reductase subunit C 369525 14480328 APECO78_01715 Escherichia coli APEC O78 fumarate reductase subunit C YP_007379526.1 369130 R 1274814 CDS YP_007379527.1 443615671 14480329 complement(369536..370270) 1 NC_020163.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit 370270 14480329 APECO78_01720 Escherichia coli APEC O78 fumarate reductase iron-sulfur subunit YP_007379527.1 369536 R 1274814 CDS YP_007379528.1 443615672 14480330 complement(370263..372071) 1 NC_020163.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit 372071 14480330 APECO78_01725 Escherichia coli APEC O78 fumarate reductase flavoprotein subunit YP_007379528.1 370263 R 1274814 CDS YP_007379529.1 443615673 14480331 372396..373373 1 NC_020163.1 COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II); EF-P-lysine aminoacylase 373373 14480331 APECO78_01730 Escherichia coli APEC O78 EF-P-lysine aminoacylase YP_007379529.1 372396 D 1274814 CDS YP_007379530.1 443615674 14480332 373592..375094 1 NC_020163.1 COG0531 Amino acid transporters; YjeM APC transporter 375094 14480332 APECO78_01735 Escherichia coli APEC O78 YjeM APC transporter YP_007379530.1 373592 D 1274814 CDS YP_007379531.1 443615675 14480333 complement(375245..378568) 1 NC_020163.1 COG3264 Small-conductance mechanosensitive channel; mechanosensitive channel protein 378568 14480333 APECO78_01740 Escherichia coli APEC O78 mechanosensitive channel protein YP_007379531.1 375245 R 1274814 CDS YP_007379532.1 443615676 14480334 complement(378590..379558) 1 NC_020163.1 COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 379558 14480334 APECO78_01745 Escherichia coli APEC O78 phosphatidylserine decarboxylase YP_007379532.1 378590 R 1274814 CDS YP_007379533.1 443615677 14480335 complement(379655..380707) 1 NC_020163.1 COG1162 Predicted GTPases; GTPase RsgA 380707 14480335 APECO78_01750 Escherichia coli APEC O78 GTPase RsgA YP_007379533.1 379655 R 1274814 CDS YP_007379534.1 443615678 14480336 380802..381347 1 NC_020163.1 COG1949 Oligoribonuclease (3'->5' exoribonuclease); oligoribonuclease 381347 14480336 APECO78_01755 Escherichia coli APEC O78 oligoribonuclease YP_007379534.1 380802 D 1274814 CDS YP_007379535.1 443615679 14484588 complement(382126..383265) 1 NC_020163.1 COG1600 Uncharacterized Fe-S protein; Fe-S electron transport protein 383265 14484588 APECO78_01760 Escherichia coli APEC O78 Fe-S electron transport protein YP_007379535.1 382126 R 1274814 CDS YP_007379536.1 443615680 14480338 383264..384811 1 NC_020163.1 COG0062 Uncharacterized conserved protein; carbohydrate kinase 384811 14480338 APECO78_01765 Escherichia coli APEC O78 carbohydrate kinase YP_007379536.1 383264 D 1274814 CDS YP_007379537.1 443615681 14480339 384783..385244 1 NC_020163.1 COG0802 Predicted ATPase or kinase; ADP-binding protein 385244 14480339 APECO78_01770 Escherichia coli APEC O78 ADP-binding protein YP_007379537.1 384783 D 1274814 CDS YP_007379538.1 443615682 14480340 385263..386600 1 NC_020163.1 COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase II 386600 14480340 APECO78_01775 Escherichia coli APEC O78 N-acetylmuramoyl-l-alanine amidase II YP_007379538.1 385263 D 1274814 CDS YP_007379539.1 443615683 14480341 386610..388457 1 NC_020163.1 COG0323 DNA mismatch repair enzyme (predicted ATPase); MutL, subunit of MutHLS complex, methyl-directed mismatch repair 388457 14480341 APECO78_01780 Escherichia coli APEC O78 MutL, subunit of MutHLS complex, methyl-directed mismatch repair YP_007379539.1 386610 D 1274814 CDS YP_007379540.1 443615684 14480342 388450..389400 1 NC_020163.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 389400 14480342 APECO78_01785 Escherichia coli APEC O78 tRNA delta(2)-isopentenylpyrophosphate transferase YP_007379540.1 388450 D 1274814 CDS YP_007379541.1 443615685 14480343 389486..389794 1 NC_020163.1 COG1923 Uncharacterized host factor I protein; RNA-binding protein Hfq 389794 14480343 APECO78_01790 Escherichia coli APEC O78 RNA-binding protein Hfq YP_007379541.1 389486 D 1274814 CDS YP_007379542.1 443615686 14480344 389871..391151 1 NC_020163.1 COG2262 GTPases; GTPase HflX 391151 14480344 APECO78_01795 Escherichia coli APEC O78 GTPase HflX YP_007379542.1 389871 D 1274814 CDS YP_007379543.1 443615687 14480345 391237..392496 1 NC_020163.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflK 392496 14480345 APECO78_01800 Escherichia coli APEC O78 FtsH protease regulator HflK YP_007379543.1 391237 D 1274814 CDS YP_007379544.1 443615688 14480346 392499..393503 1 NC_020163.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; FtsH protease regulator HflC 393503 14480346 APECO78_01805 Escherichia coli APEC O78 FtsH protease regulator HflC YP_007379544.1 392499 D 1274814 CDS YP_007379545.1 443615689 14480347 393585..393782 1 NC_020163.1 COG3242 Uncharacterized protein conserved in bacteria; inner membrane protein 393782 14480347 APECO78_01810 Escherichia coli APEC O78 inner membrane protein YP_007379545.1 393585 D 1274814 CDS YP_007379546.1 443615690 14480348 393886..395184 1 NC_020163.1 COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 395184 14480348 APECO78_01815 Escherichia coli APEC O78 adenylosuccinate synthetase YP_007379546.1 393886 D 1274814 CDS YP_007379547.1 443615691 14480349 395389..395814 1 NC_020163.1 COG1959 Predicted transcriptional regulator; transcriptional repressor NsrR 395814 14480349 APECO78_01820 Escherichia coli APEC O78 transcriptional repressor NsrR YP_007379547.1 395389 D 1274814 CDS YP_007379548.1 443615692 14480350 395853..398294 1 NC_020163.1 COG0557 Exoribonuclease R; exoribonuclease R 398294 14480350 APECO78_01825 Escherichia coli APEC O78 exoribonuclease R YP_007379548.1 395853 D 1274814 CDS YP_007379549.1 443615693 14480351 398474..399205 1 NC_020163.1 COG0566 rRNA methylases; 23S rRNA (guanosine-2'-O-)-methyltransferase 399205 14480351 APECO78_01830 Escherichia coli APEC O78 23S rRNA (guanosine-2'-O-)-methyltransferase YP_007379549.1 398474 D 1274814 CDS YP_007379550.1 443615694 14480352 399331..399732 1 NC_020163.1 COG3789 Uncharacterized protein conserved in bacteria; cytoplasmic protein 399732 14480352 APECO78_01835 Escherichia coli APEC O78 cytoplasmic protein YP_007379550.1 399331 D 1274814 CDS YP_007379551.1 443615695 14480353 399751..400449 1 NC_020163.1 COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; transcriptional regulator effector protein 400449 14480353 APECO78_01840 Escherichia coli APEC O78 transcriptional regulator effector protein YP_007379551.1 399751 D 1274814 CDS YP_007379552.1 443615696 14480354 400500..401159 1 NC_020163.1 hypothetical protein 401159 14480354 APECO78_01845 Escherichia coli APEC O78 hypothetical protein YP_007379552.1 400500 D 1274814 CDS YP_007379553.1 443615697 14480355 401177..401575 1 NC_020163.1 COG3766 Predicted membrane protein; hypothetical protein 401575 14480355 APECO78_01850 Escherichia coli APEC O78 hypothetical protein YP_007379553.1 401177 D 1274814 CDS YP_007379554.1 443615698 14480356 401585..402223 1 NC_020163.1 hypothetical protein 402223 14480356 APECO78_01855 Escherichia coli APEC O78 hypothetical protein YP_007379554.1 401585 D 1274814 CDS YP_007379555.1 443615699 14480357 402226..403389 1 NC_020163.1 COG0754 Glutathionylspermidine synthase; synthetase/amidase 403389 14480357 APECO78_01860 Escherichia coli APEC O78 synthetase/amidase YP_007379555.1 402226 D 1274814 CDS YP_007379556.1 443615700 14480358 403473..405098 1 NC_020163.1 COG1960 Acyl-CoA dehydrogenases; isovaleryl CoA dehydrogenase 405098 14480358 APECO78_01865 Escherichia coli APEC O78 isovaleryl CoA dehydrogenase YP_007379556.1 403473 D 1274814 CDS YP_007379557.1 443615701 14480359 complement(405215..405490) 1 NC_020163.1 hypothetical protein 405490 14480359 APECO78_01870 Escherichia coli APEC O78 hypothetical protein YP_007379557.1 405215 R 1274814 CDS YP_007379558.1 443615702 14480360 complement(405639..405968) 1 NC_020163.1 biofilm stress and motility protein A 405968 14480360 APECO78_01875 Escherichia coli APEC O78 biofilm stress and motility protein A YP_007379558.1 405639 R 1274814 CDS YP_007379559.1 443615703 14480361 406150..406899 1 NC_020163.1 COG1073 Hydrolases of the alpha/beta superfamily; esterase 406899 14480361 APECO78_01880 Escherichia coli APEC O78 esterase YP_007379559.1 406150 D 1274814 CDS YP_007379560.1 443615704 14480362 complement(406896..407651) 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; transcriptional repressor UlaR 407651 14480362 APECO78_01885 Escherichia coli APEC O78 transcriptional repressor UlaR YP_007379560.1 406896 R 1274814 CDS YP_007379561.1 443615705 14480363 complement(407759..408823) 1 NC_020163.1 COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; L-ascorbate 6-phosphate lactonase 408823 14480363 APECO78_01890 Escherichia coli APEC O78 L-ascorbate 6-phosphate lactonase YP_007379561.1 407759 R 1274814 CDS YP_007379562.1 443615706 14480364 409178..410575 1 NC_020163.1 COG3037 Uncharacterized protein conserved in bacteria; PTS system ascorbate-specific transporter subunit IIC 410575 14480364 APECO78_01895 Escherichia coli APEC O78 PTS system ascorbate-specific transporter subunit IIC YP_007379562.1 409178 D 1274814 CDS YP_007379563.1 443615707 14480365 410591..410896 1 NC_020163.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system L-ascorbate-specific transporter subunit IIB 410896 14480365 APECO78_01900 Escherichia coli APEC O78 PTS system L-ascorbate-specific transporter subunit IIB YP_007379563.1 410591 D 1274814 CDS YP_007379564.1 443615708 14480366 410906..411370 1 NC_020163.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system L-ascorbate-specific transporter subunit IIA 411370 14480366 APECO78_01905 Escherichia coli APEC O78 PTS system L-ascorbate-specific transporter subunit IIA YP_007379564.1 410906 D 1274814 CDS YP_007379565.1 443615709 14480367 411384..412034 1 NC_020163.1 COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 412034 ulaD 14480367 ulaD Escherichia coli APEC O78 3-keto-L-gulonate-6-phosphate decarboxylase YP_007379565.1 411384 D 1274814 CDS YP_007379566.1 443615710 14480368 412044..412898 1 NC_020163.1 COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 412898 14480368 APECO78_01915 Escherichia coli APEC O78 L-xylulose 5-phosphate 3-epimerase YP_007379566.1 412044 D 1274814 CDS YP_007379567.1 443615711 14480369 412898..413584 1 NC_020163.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 413584 sgaE 14480369 sgaE Escherichia coli APEC O78 L-ribulose-5-phosphate 4-epimerase YP_007379567.1 412898 D 1274814 CDS YP_007379568.1 443615712 14480370 complement(413713..413988) 1 NC_020163.1 hypothetical protein 413988 14480370 APECO78_01925 Escherichia coli APEC O78 hypothetical protein YP_007379568.1 413713 R 1274814 CDS YP_007379569.1 443615713 14480371 414315..414710 1 NC_020163.1 COG0360 Ribosomal protein S6; 30S ribosomal protein S6 414710 rpsF 14480371 rpsF Escherichia coli APEC O78 30S ribosomal protein S6 YP_007379569.1 414315 D 1274814 CDS YP_007379570.1 443615714 14480372 414717..415031 1 NC_020163.1 COG2965 Primosomal replication protein N; primosomal replication protein N 415031 14480372 APECO78_01935 Escherichia coli APEC O78 primosomal replication protein N YP_007379570.1 414717 D 1274814 CDS YP_007379571.1 443615715 14480373 415036..415263 1 NC_020163.1 COG0238 Ribosomal protein S18; 30S ribosomal protein S18 415263 14480373 APECO78_01940 Escherichia coli APEC O78 30S ribosomal protein S18 YP_007379571.1 415036 D 1274814 CDS YP_007379572.1 443615716 14480374 415305..415754 1 NC_020163.1 COG0359 Ribosomal protein L9; 50S ribosomal protein L9 415754 14480374 APECO78_01945 Escherichia coli APEC O78 50S ribosomal protein L9 YP_007379572.1 415305 D 1274814 CDS YP_007379573.1 443615717 14480375 complement(415866..416837) 1 NC_020163.1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; hypothetical protein 416837 14480375 APECO78_01950 Escherichia coli APEC O78 hypothetical protein YP_007379573.1 415866 R 1274814 CDS YP_007379574.1 443615718 14480376 complement(416890..418191) 1 NC_020163.1 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; transporter 418191 14480376 APECO78_01955 Escherichia coli APEC O78 transporter YP_007379574.1 416890 R 1274814 CDS YP_007379575.1 443615719 14480377 complement(418234..418734) 1 NC_020163.1 COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; TRAP dicarboxylate transporter subunit DctQ 418734 14480377 APECO78_01960 Escherichia coli APEC O78 TRAP dicarboxylate transporter subunit DctQ YP_007379575.1 418234 R 1274814 CDS YP_007379576.1 443615720 14480378 complement(418731..420812) 1 NC_020163.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; hypothetical protein 420812 14480378 APECO78_01965 Escherichia coli APEC O78 hypothetical protein YP_007379576.1 418731 R 1274814 CDS YP_007379577.1 443615721 14480379 complement(420809..422350) 1 NC_020163.1 COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; hypothetical protein 422350 14480379 APECO78_01970 Escherichia coli APEC O78 hypothetical protein YP_007379577.1 420809 R 1274814 CDS YP_007379578.1 443615722 14480380 complement(422360..423136) 1 NC_020163.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; hypothetical protein 423136 14480380 APECO78_01975 Escherichia coli APEC O78 hypothetical protein YP_007379578.1 422360 R 1274814 CDS YP_007379579.1 443615723 14480381 complement(423146..423988) 1 NC_020163.1 COG1082 Sugar phosphate isomerases/epimerases; hypothetical protein 423988 14480381 APECO78_01980 Escherichia coli APEC O78 hypothetical protein YP_007379579.1 423146 R 1274814 CDS YP_007379580.1 443615724 14480382 complement(423998..424789) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); hypothetical protein 424789 14480382 APECO78_01985 Escherichia coli APEC O78 hypothetical protein YP_007379580.1 423998 R 1274814 CDS YP_007379581.1 443615725 14480383 425002..425649 1 NC_020163.1 COG1309 Transcriptional regulator; putative transcriptional regulator 425649 14480383 APECO78_01990 Escherichia coli APEC O78 putative transcriptional regulator YP_007379581.1 425002 D 1274814 CDS YP_007379582.1 443615726 14480384 complement(425633..426271) 1 NC_020163.1 COG3061 Cell envelope opacity-associated protein A; cell envelope opacity-associated protein 426271 14480384 APECO78_01995 Escherichia coli APEC O78 cell envelope opacity-associated protein YP_007379582.1 425633 R 1274814 CDS YP_007379583.1 443615727 14480385 426490..427110 1 NC_020163.1 COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; peptidyl-prolyl cis-trans isomerase 427110 14480385 APECO78_02000 Escherichia coli APEC O78 peptidyl-prolyl cis-trans isomerase YP_007379583.1 426490 D 1274814 CDS YP_007379584.1 443615728 14480386 427419..428822 1 NC_020163.1 COG1113 Gamma-aminobutyrate permease and related permeases; D-alanine/D-serine/glycine permease 428822 14480386 APECO78_02005 Escherichia coli APEC O78 D-alanine/D-serine/glycine permease YP_007379584.1 427419 D 1274814 CDS YP_007379585.1 443615729 14480387 428863..429096 1 NC_020163.1 hypothetical protein 429096 14480387 APECO78_02010 Escherichia coli APEC O78 hypothetical protein YP_007379585.1 428863 D 1274814 CDS YP_007379586.1 443615730 14480388 429089..429523 1 NC_020163.1 hypothetical protein 429523 14480388 APECO78_02015 Escherichia coli APEC O78 hypothetical protein YP_007379586.1 429089 D 1274814 CDS YP_007379587.1 443615731 14480389 429667..430689 1 NC_020163.1 hypothetical protein 430689 14480389 APECO78_02020 Escherichia coli APEC O78 hypothetical protein YP_007379587.1 429667 D 1274814 CDS YP_007379588.1 443615732 14480390 complement(430936..431598) 1 NC_020163.1 COG2846 Regulator of cell morphogenesis and NO signaling; iron-sulfur cluster repair di-iron protein 431598 14480390 APECO78_02025 Escherichia coli APEC O78 iron-sulfur cluster repair di-iron protein YP_007379588.1 430936 R 1274814 CDS YP_007379589.1 443615733 14480391 complement(431706..432671) 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 432671 14480391 APECO78_02030 Escherichia coli APEC O78 hypothetical protein YP_007379589.1 431706 R 1274814 CDS YP_007379590.1 443615734 14480392 complement(432779..433639) 1 NC_020163.1 COG0702 Predicted nucleoside-diphosphate-sugar epimerases; NAD(P)H:quinone oxidoreductase 433639 14480392 APECO78_02035 Escherichia coli APEC O78 NAD(P)H:quinone oxidoreductase YP_007379590.1 432779 R 1274814 CDS YP_007379591.1 443615735 14480393 433728..434108 1 NC_020163.1 COG1733 Predicted transcriptional regulators; hypothetical protein 434108 14480393 APECO78_02040 Escherichia coli APEC O78 hypothetical protein YP_007379591.1 433728 D 1274814 CDS YP_007379592.1 443615736 14480394 complement(434237..436180) 1 NC_020163.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 436180 cpdB 14480394 cpdB Escherichia coli APEC O78 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_007379592.1 434237 R 1274814 CDS YP_007379593.1 443615737 14480395 436370..437110 1 NC_020163.1 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; adenosine-3'(2'),5'-bisphosphate nucleotidase 437110 14480395 APECO78_02050 Escherichia coli APEC O78 adenosine-3'(2'),5'-bisphosphate nucleotidase YP_007379593.1 436370 D 1274814 CDS YP_007379594.1 443615738 14480396 complement(437100..437657) 1 NC_020163.1 COG3054 Predicted transcriptional regulator; hypothetical protein 437657 14480396 APECO78_02055 Escherichia coli APEC O78 hypothetical protein YP_007379594.1 437100 R 1274814 CDS YP_007379595.1 443615739 14480397 437982..438188 1 NC_020163.1 COG1117 ABC-type phosphate transport system, ATPase component; hypothetical protein 438188 14480397 APECO78_02060 Escherichia coli APEC O78 hypothetical protein YP_007379595.1 437982 D 1274814 CDS YP_007379596.1 443615740 14480398 complement(438250..439593) 1 NC_020163.1 COG1253 Hemolysins and related proteins containing CBS domains; inner membrane protein 439593 14480398 APECO78_02065 Escherichia coli APEC O78 inner membrane protein YP_007379596.1 438250 R 1274814 CDS YP_007379597.1 443615741 14480399 complement(439916..440554) 1 NC_020163.1 COG0225 Peptide methionine sulfoxide reductase; Methionine sulfoxide reductase A 440554 14480399 APECO78_02070 Escherichia coli APEC O78 Methionine sulfoxide reductase A YP_007379597.1 439916 R 1274814 CDS YP_007379598.1 443615742 14480400 440662..440790 1 NC_020163.1 COG1131 ABC-type multidrug transport system, ATPase component; hypothetical protein 440790 14480400 APECO78_02075 Escherichia coli APEC O78 hypothetical protein YP_007379598.1 440662 D 1274814 CDS YP_007379599.1 443615743 14480401 440760..442493 1 NC_020163.1 COG0729 Outer membrane protein; surface antigen (D15) 442493 14480401 APECO78_02080 Escherichia coli APEC O78 surface antigen (D15) YP_007379599.1 440760 D 1274814 CDS YP_007379600.1 443615744 14480402 442490..446269 1 NC_020163.1 COG2911 Uncharacterized protein conserved in bacteria; hypothetical protein 446269 14480402 APECO78_02085 Escherichia coli APEC O78 hypothetical protein YP_007379600.1 442490 D 1274814 CDS YP_007379601.1 443615745 14480403 446272..446613 1 NC_020163.1 COG2105 Uncharacterized conserved protein; hypothetical protein 446613 14480403 APECO78_02090 Escherichia coli APEC O78 hypothetical protein YP_007379601.1 446272 D 1274814 CDS YP_007379602.1 443615746 14480404 446826..447077 1 NC_020163.1 COG2336 Growth regulator; antitoxin ChpS 447077 14480404 APECO78_02095 Escherichia coli APEC O78 antitoxin ChpS YP_007379602.1 446826 D 1274814 CDS YP_007379603.1 443615747 14480405 447071..447421 1 NC_020163.1 COG2337 Growth inhibitor; toxin ChpB 447421 14480405 APECO78_02100 Escherichia coli APEC O78 toxin ChpB YP_007379603.1 447071 D 1274814 CDS YP_007379604.1 443615748 14480406 complement(447501..448031) 1 NC_020163.1 COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase 448031 14480406 APECO78_02105 Escherichia coli APEC O78 inorganic pyrophosphatase YP_007379604.1 447501 R 1274814 CDS YP_007379605.1 443615749 14480407 448341..449297 1 NC_020163.1 COG1879 ABC-type sugar transport system, periplasmic component; sugar transporter subunit 449297 14480407 APECO78_02110 Escherichia coli APEC O78 sugar transporter subunit YP_007379605.1 448341 D 1274814 CDS YP_007379606.1 443615750 14480408 449607..451109 1 NC_020163.1 COG1129 ABC-type sugar transport system, ATPase component; putative sugar transporter subunit 451109 14480408 APECO78_02115 Escherichia coli APEC O78 putative sugar transporter subunit YP_007379606.1 449607 D 1274814 CDS YP_007379607.1 443615751 14480409 451123..452145 1 NC_020163.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; putative sugar transporter subunit 452145 14480409 APECO78_02120 Escherichia coli APEC O78 putative sugar transporter subunit YP_007379607.1 451123 D 1274814 CDS YP_007379608.1 443615752 14480410 452132..453127 1 NC_020163.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; inner membrane ABC transporter permease YjfF 453127 14480410 APECO78_02125 Escherichia coli APEC O78 inner membrane ABC transporter permease YjfF YP_007379608.1 452132 D 1274814 CDS YP_007379609.1 443615753 14480411 complement(453160..454158) 1 NC_020163.1 COG0158 Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase 454158 14480411 APECO78_02130 Escherichia coli APEC O78 fructose-1,6-bisphosphatase YP_007379609.1 453160 R 1274814 CDS YP_007379610.1 443615754 14480412 454334..455707 1 NC_020163.1 COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelat e ligase 455707 14480412 APECO78_02135 Escherichia coli APEC O78 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelat e ligase YP_007379610.1 454334 D 1274814 CDS YP_007379611.1 443615755 14480413 complement(455863..456414) 1 NC_020163.1 COG3028 Uncharacterized protein conserved in bacteria; hypothetical protein 456414 14480413 APECO78_02140 Escherichia coli APEC O78 hypothetical protein YP_007379611.1 455863 R 1274814 CDS YP_007379612.1 443615756 14480414 456520..457860 1 NC_020163.1 COG0312 Predicted Zn-dependent proteases and their inactivated homologs; peptidase PmbA 457860 14480414 APECO78_02145 Escherichia coli APEC O78 peptidase PmbA YP_007379612.1 456520 D 1274814 CDS YP_007379613.1 443615757 14480415 457915..458301 1 NC_020163.1 COG3783 Soluble cytochrome b562; cytochrome b562 458301 14480415 APECO78_02150 Escherichia coli APEC O78 cytochrome b562 YP_007379613.1 457915 D 1274814 CDS YP_007379614.1 443615758 14480416 complement(458346..458810) 1 NC_020163.1 COG0602 Organic radical activating enzymes; anaerobic ribonucleotide reductase-activating protein 458810 nrdG 14480416 nrdG Escherichia coli APEC O78 anaerobic ribonucleotide reductase-activating protein YP_007379614.1 458346 R 1274814 CDS YP_007379615.1 443615759 14480417 complement(458969..461107) 1 NC_020163.1 COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; anaerobic ribonucleoside triphosphate reductase 461107 14480417 APECO78_02160 Escherichia coli APEC O78 anaerobic ribonucleoside triphosphate reductase YP_007379615.1 458969 R 1274814 CDS YP_007379616.1 443615760 14480418 complement(461501..463156) 1 NC_020163.1 COG0366 Glycosidases; trehalose-6-phosphate hydrolase 463156 14480418 APECO78_02165 Escherichia coli APEC O78 trehalose-6-phosphate hydrolase YP_007379616.1 461501 R 1274814 CDS YP_007379617.1 443615761 14480419 complement(463206..464624) 1 NC_020163.1 COG1264 Phosphotransferase system IIB components; PTS system trehalose(maltose)-specific transporter subunits IIBC 464624 14480419 APECO78_02170 Escherichia coli APEC O78 PTS system trehalose(maltose)-specific transporter subunits IIBC YP_007379617.1 463206 R 1274814 CDS YP_007379618.1 443615762 14480420 complement(464746..465693) 1 NC_020163.1 COG1609 Transcriptional regulators; trehalose repressor 465693 14480420 APECO78_02175 Escherichia coli APEC O78 trehalose repressor YP_007379618.1 464746 R 1274814 CDS YP_007379619.1 443615763 14480421 466072..468768 1 NC_020163.1 COG0474 Cation transport ATPase; magnesium-transporting ATPase MgtA 468768 14480421 APECO78_02180 Escherichia coli APEC O78 magnesium-transporting ATPase MgtA YP_007379619.1 466072 D 1274814 CDS YP_007379620.1 443615764 14480422 complement(468974..469360) 1 NC_020163.1 COG0251 Putative translation initiation inhibitor, yjgF family; hypothetical protein 469360 14480422 APECO78_02185 Escherichia coli APEC O78 hypothetical protein YP_007379620.1 468974 R 1274814 CDS YP_007379621.1 443615765 14480423 complement(469433..469894) 1 NC_020163.1 COG1781 Aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase regulatory subunit 469894 14480423 APECO78_02190 Escherichia coli APEC O78 aspartate carbamoyltransferase regulatory subunit YP_007379621.1 469433 R 1274814 CDS YP_007379622.1 443615766 14480424 complement(469907..470842) 1 NC_020163.1 COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit 470842 14480424 APECO78_02195 Escherichia coli APEC O78 aspartate carbamoyltransferase catalytic subunit YP_007379622.1 469907 R 1274814 CDS YP_007379623.1 443615767 14480425 complement(470846..471037) 1 NC_020163.1 pyrBI operon leader peptide 471037 14480425 APECO78_02200 Escherichia coli APEC O78 pyrBI operon leader peptide YP_007379623.1 470846 R 1274814 CDS YP_007379624.1 443615768 14480426 complement(471019..471156) 1 NC_020163.1 hypothetical protein 471156 14480426 APECO78_02205 Escherichia coli APEC O78 hypothetical protein YP_007379624.1 471019 R 1274814 CDS YP_007379625.1 443615769 14480427 complement(471261..471656) 1 NC_020163.1 COG0251 Putative translation initiation inhibitor, yjgF family; mRNA endoribonuclease 471656 14480427 APECO78_02210 Escherichia coli APEC O78 mRNA endoribonuclease YP_007379625.1 471261 R 1274814 CDS YP_007379626.1 443615770 14480428 complement(471787..472461) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 472461 14480428 APECO78_02215 Escherichia coli APEC O78 oxidoreductase YP_007379626.1 471787 R 1274814 CDS YP_007379627.1 443615771 14480429 472532..473125 1 NC_020163.1 COG1309 Transcriptional regulator; TetR family transcriptional regulator 473125 14480429 APECO78_02220 Escherichia coli APEC O78 TetR family transcriptional regulator YP_007379627.1 472532 D 1274814 CDS YP_007379628.1 443615772 14480430 473270..473722 1 NC_020163.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 473722 14480430 APECO78_02225 Escherichia coli APEC O78 hypothetical protein YP_007379628.1 473270 D 1274814 CDS YP_007379629.1 443615773 14480431 473845..474423 1 NC_020163.1 hypothetical protein 474423 14480431 APECO78_02230 Escherichia coli APEC O78 hypothetical protein YP_007379629.1 473845 D 1274814 CDS YP_007379630.1 443615774 14480432 474424..475443 1 NC_020163.1 hypothetical protein 475443 14480432 APECO78_02235 Escherichia coli APEC O78 hypothetical protein YP_007379630.1 474424 D 1274814 CDS YP_007379631.1 443615775 14480433 complement(475501..476505) 1 NC_020163.1 COG0078 Ornithine carbamoyltransferase; ornithine carbamoyltransferase subunit I 476505 14480433 APECO78_02240 Escherichia coli APEC O78 ornithine carbamoyltransferase subunit I YP_007379631.1 475501 R 1274814 CDS YP_007379632.1 443615776 14480434 476667..477083 1 NC_020163.1 COG3076 Uncharacterized protein conserved in bacteria; RNase E inhibitor protein 477083 14480434 APECO78_02245 Escherichia coli APEC O78 RNase E inhibitor protein YP_007379632.1 476667 D 1274814 CDS YP_007379633.1 443615777 14480435 complement(477130..477633) 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 477633 14480435 APECO78_02250 Escherichia coli APEC O78 acetyltransferase YP_007379633.1 477130 R 1274814 CDS YP_007379634.1 443615778 14480436 477826..479022 1 NC_020163.1 COG4269 Predicted membrane protein; hypothetical protein 479022 14480436 APECO78_02255 Escherichia coli APEC O78 hypothetical protein YP_007379634.1 477826 D 1274814 CDS YP_007379635.1 443615779 14480437 complement(479076..481931) 1 NC_020163.1 COG0525 Valyl-tRNA synthetase; valyl-tRNA ligase 481931 valS 14480437 valS Escherichia coli APEC O78 valyl-tRNA ligase YP_007379635.1 479076 R 1274814 CDS YP_007379636.1 443615780 14480438 complement(481931..482374) 1 NC_020163.1 COG2927 DNA polymerase III, chi subunit; DNA polymerase III subunit chi 482374 14480438 APECO78_02265 Escherichia coli APEC O78 DNA polymerase III subunit chi YP_007379636.1 481931 R 1274814 CDS YP_007379637.1 443615781 14480439 complement(482635..484146) 1 NC_020163.1 COG0260 Leucyl aminopeptidase; multifunctional aminopeptidase A 484146 14480439 APECO78_02270 Escherichia coli APEC O78 multifunctional aminopeptidase A YP_007379637.1 482635 R 1274814 CDS YP_007379638.1 443615782 14480440 484413..485513 1 NC_020163.1 COG0795 Predicted permeases; lipopolysaccharide ABC transporter permease LptF 485513 14480440 APECO78_02275 Escherichia coli APEC O78 lipopolysaccharide ABC transporter permease LptF YP_007379638.1 484413 D 1274814 CDS YP_007379639.1 443615783 14480441 485513..486595 1 NC_020163.1 COG0795 Predicted permeases; hypothetical protein 486595 14480441 APECO78_02280 Escherichia coli APEC O78 hypothetical protein YP_007379639.1 485513 D 1274814 CDS YP_007379640.1 443615784 14480442 complement(486756..488258) 1 NC_020163.1 COG0433 Predicted ATPase; hypothetical protein 488258 14480442 APECO78_02285 Escherichia coli APEC O78 hypothetical protein YP_007379640.1 486756 R 1274814 CDS YP_007379641.1 443615785 14480443 complement(488336..489334) 1 NC_020163.1 COG1609 Transcriptional regulators; L-idonate regulatory protein 489334 14480443 APECO78_02290 Escherichia coli APEC O78 L-idonate regulatory protein YP_007379641.1 488336 R 1274814 CDS YP_007379642.1 443615786 14480444 complement(489401..490720) 1 NC_020163.1 COG2610 H+/gluconate symporter and related permeases; Gnt-II system L-idonate transporter IdnT 490720 14480444 APECO78_02295 Escherichia coli APEC O78 Gnt-II system L-idonate transporter IdnT YP_007379642.1 489401 R 1274814 CDS YP_007379643.1 443615787 14480445 complement(490785..491549) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 5-keto-D-gluconate-5-reductase 491549 14480445 APECO78_02300 Escherichia coli APEC O78 5-keto-D-gluconate-5-reductase YP_007379643.1 490785 R 1274814 CDS YP_007379644.1 443615788 14480446 complement(491573..492604) 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-idonate 5-dehydrogenase 492604 14480446 APECO78_02305 Escherichia coli APEC O78 L-idonate 5-dehydrogenase YP_007379644.1 491573 R 1274814 CDS YP_007379645.1 443615789 14480447 492821..493384 1 NC_020163.1 COG3265 Gluconate kinase; thermosensitive gluconokinase 493384 14480447 APECO78_02310 Escherichia coli APEC O78 thermosensitive gluconokinase YP_007379645.1 492821 D 1274814 CDS YP_007379646.1 443615790 14480448 complement(493388..494407) 1 NC_020163.1 COG1064 Zn-dependent alcohol dehydrogenases; putative zinc-binding dehydrogenase 494407 14480448 APECO78_02315 Escherichia coli APEC O78 putative zinc-binding dehydrogenase YP_007379646.1 493388 R 1274814 CDS YP_007379647.1 443615791 14484589 494874..496139 1 NC_020163.1 COG0582 Integrase; phage integrase family site specific recombinase 496139 14484589 APECO78_02320 Escherichia coli APEC O78 phage integrase family site specific recombinase YP_007379647.1 494874 D 1274814 CDS YP_007379648.1 443615792 14480450 complement(496540..497655) 1 NC_020163.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative sulfatase 497655 14480450 APECO78_02325 Escherichia coli APEC O78 putative sulfatase YP_007379648.1 496540 R 1274814 CDS YP_007379649.1 443615793 14480451 complement(497652..497882) 1 NC_020163.1 hypothetical protein 497882 14480451 APECO78_02330 Escherichia coli APEC O78 hypothetical protein YP_007379649.1 497652 R 1274814 CDS YP_007379650.1 443615794 14480452 498146..498367 1 NC_020163.1 COG3436 Transposase and inactivated derivatives; hypothetical protein 498367 14480452 APECO78_02335 Escherichia coli APEC O78 hypothetical protein YP_007379650.1 498146 D 1274814 CDS YP_007379651.1 443615795 14480453 498796..498939 1 NC_020163.1 hypothetical protein 498939 14480453 APECO78_02340 Escherichia coli APEC O78 hypothetical protein YP_007379651.1 498796 D 1274814 CDS YP_007379652.1 443615796 14480454 complement(498967..500313) 1 NC_020163.1 COG3385 FOG: Transposase and inactivated derivatives; putative IS4 transposase; KpLE2 phage-like element 500313 14480454 APECO78_02345 Escherichia coli APEC O78 putative IS4 transposase; KpLE2 phage-like element YP_007379652.1 498967 R 1274814 CDS YP_007379653.1 443615797 14480455 500922..502139 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; KpLE2 phage-like element transporter 502139 14480455 APECO78_02350 Escherichia coli APEC O78 KpLE2 phage-like element transporter YP_007379653.1 500922 D 1274814 CDS YP_007379654.1 443615798 14480456 502151..503269 1 NC_020163.1 COG0673 Predicted dehydrogenases and related proteins; KpLE2 phage-like element; predicted oxidoreductase 503269 14480456 APECO78_02355 Escherichia coli APEC O78 KpLE2 phage-like element; predicted oxidoreductase YP_007379654.1 502151 D 1274814 CDS YP_007379655.1 443615799 14480457 503312..503437 1 NC_020163.1 small predicted membrane protein 503437 14480457 APECO78_02360 Escherichia coli APEC O78 small predicted membrane protein YP_007379655.1 503312 D 1274814 CDS YP_007379656.1 443615800 14480458 complement(503490..503747) 1 NC_020163.1 hypothetical protein 503747 14480458 APECO78_02365 Escherichia coli APEC O78 hypothetical protein YP_007379656.1 503490 R 1274814 CDS YP_007379657.1 443615801 14480459 503770..503973 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; hypothetical protein 503973 14480459 APECO78_02370 Escherichia coli APEC O78 hypothetical protein YP_007379657.1 503770 D 1274814 CDS YP_007379658.1 443615802 14480460 504061..504333 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS911 protein 504333 14480460 APECO78_02375 Escherichia coli APEC O78 IS911 protein YP_007379658.1 504061 D 1274814 CDS YP_007379659.1 443615803 14480461 504575..504988 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; transposase 504988 14480461 APECO78_02380 Escherichia coli APEC O78 transposase YP_007379659.1 504575 D 1274814 CDS YP_007379660.1 443615804 14480462 504985..505227 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; putative transposase 505227 14480462 APECO78_02385 Escherichia coli APEC O78 putative transposase YP_007379660.1 504985 D 1274814 CDS YP_007379661.1 443615805 14480463 505154..505567 1 NC_020163.1 COG2085 Predicted dinucleotide-binding enzymes; hypothetical protein 505567 14480463 APECO78_02390 Escherichia coli APEC O78 hypothetical protein YP_007379661.1 505154 D 1274814 CDS YP_007379662.1 443615806 14480464 complement(506086..506892) 1 NC_020163.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-dicitrate transporter ATP-binding subunit 506892 14480464 APECO78_02395 Escherichia coli APEC O78 iron-dicitrate transporter ATP-binding subunit YP_007379662.1 506086 R 1274814 CDS YP_007379663.1 443615807 14480465 complement(506893..507849) 1 NC_020163.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-dicitrate transporter subunit FecD 507849 14480465 APECO78_02400 Escherichia coli APEC O78 iron-dicitrate transporter subunit FecD YP_007379663.1 506893 R 1274814 CDS YP_007379664.1 443615808 14480466 complement(507846..508844) 1 NC_020163.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; fecC 508844 14480466 APECO78_02405 Escherichia coli APEC O78 fecC YP_007379664.1 507846 R 1274814 CDS YP_007379665.1 443615809 14480467 complement(508841..509743) 1 NC_020163.1 COG4594 ABC-type Fe3+-citrate transport system, periplasmic component; iron-dicitrate transporter subunit 509743 14480467 APECO78_02410 Escherichia coli APEC O78 iron-dicitrate transporter subunit YP_007379665.1 508841 R 1274814 CDS YP_007379666.1 443615810 14480468 complement(509788..512112) 1 NC_020163.1 COG4772 Outer membrane receptor for Fe3+-dicitrate; ferric citrate outer membrane transporter 512112 14480468 APECO78_02415 Escherichia coli APEC O78 ferric citrate outer membrane transporter YP_007379666.1 509788 R 1274814 CDS YP_007379667.1 443615811 14480469 complement(512199..513152) 1 NC_020163.1 COG3712 Fe2+-dicitrate sensor, membrane component; fec operon regulator FecR 513152 14480469 APECO78_02420 Escherichia coli APEC O78 fec operon regulator FecR YP_007379667.1 512199 R 1274814 CDS YP_007379668.1 443615812 14480470 complement(513149..513670) 1 NC_020163.1 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; RNA polymerase sigma factor FecI 513670 14480470 APECO78_02425 Escherichia coli APEC O78 RNA polymerase sigma factor FecI YP_007379668.1 513149 R 1274814 CDS YP_007379669.1 443615813 14480471 513962..514237 1 NC_020163.1 COG3677 Transposase and inactivated derivatives; transposase 514237 14480471 APECO78_02430 Escherichia coli APEC O78 transposase YP_007379669.1 513962 D 1274814 CDS YP_007379670.1 443615814 14480472 514264..514449 1 NC_020163.1 insertion element protein 514449 14480472 APECO78_02435 Escherichia coli APEC O78 insertion element protein YP_007379670.1 514264 D 1274814 CDS YP_007379671.1 443615815 14480473 514450..514659 1 NC_020163.1 COG1662 Transposase and inactivated derivatives, IS1 family; transposase 514659 14480473 APECO78_02440 Escherichia coli APEC O78 transposase YP_007379671.1 514450 D 1274814 CDS YP_007379672.1 443615816 14480474 complement(515175..516080) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 516080 14480474 APECO78_02445 Escherichia coli APEC O78 IS2 transposase TnpB YP_007379672.1 515175 R 1274814 CDS YP_007379673.1 443615817 14480475 complement(516038..516403) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 516403 14480475 APECO78_02450 Escherichia coli APEC O78 IS2 repressor TnpA YP_007379673.1 516038 R 1274814 CDS YP_007379674.1 443615818 14480476 516756..517013 1 NC_020163.1 hypothetical protein 517013 14480476 APECO78_02455 Escherichia coli APEC O78 hypothetical protein YP_007379674.1 516756 D 1274814 CDS YP_007379675.1 443615819 14480477 complement(517176..517385) 1 NC_020163.1 hypothetical protein 517385 14480477 APECO78_02460 Escherichia coli APEC O78 hypothetical protein YP_007379675.1 517176 R 1274814 CDS YP_007379676.1 443615820 14480478 517764..519122 1 NC_020163.1 COG4222 Uncharacterized protein conserved in bacteria; hypothetical protein 519122 14480478 APECO78_02465 Escherichia coli APEC O78 hypothetical protein YP_007379676.1 517764 D 1274814 CDS YP_007379677.1 443615821 14480479 complement(519361..520746) 1 NC_020163.1 COG3436 Transposase and inactivated derivatives; putative transposase 520746 14480479 APECO78_02470 Escherichia coli APEC O78 putative transposase YP_007379677.1 519361 R 1274814 CDS YP_007379678.1 443615822 14480480 complement(520796..521143) 1 NC_020163.1 COG3436 Transposase and inactivated derivatives; putative transposase 521143 14480480 APECO78_02475 Escherichia coli APEC O78 putative transposase YP_007379678.1 520796 R 1274814 CDS YP_007379679.1 443615823 14480481 complement(521140..521541) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; putative transposase, IS3 family protein 521541 14480481 APECO78_02480 Escherichia coli APEC O78 putative transposase, IS3 family protein YP_007379679.1 521140 R 1274814 CDS YP_007379680.1 443615824 14480482 complement(521875..522309) 1 NC_020163.1 hypothetical protein 522309 14480482 APECO78_02485 Escherichia coli APEC O78 hypothetical protein YP_007379680.1 521875 R 1274814 CDS YP_007379681.1 443615825 14480483 complement(522297..522704) 1 NC_020163.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; hypothetical protein 522704 14480483 APECO78_02490 Escherichia coli APEC O78 hypothetical protein YP_007379681.1 522297 R 1274814 CDS YP_007379682.1 443615826 14480484 complement(522958..523527) 1 NC_020163.1 hypothetical protein 523527 14480484 APECO78_02495 Escherichia coli APEC O78 hypothetical protein YP_007379682.1 522958 R 1274814 CDS YP_007379683.1 443615827 14480485 523730..523924 1 NC_020163.1 hypothetical protein 523924 14480485 APECO78_02500 Escherichia coli APEC O78 hypothetical protein YP_007379683.1 523730 D 1274814 CDS YP_007379684.1 443615828 14480486 complement(524257..524397) 1 NC_020163.1 hemolysin expression modulating protein 524397 14480486 APECO78_02505 Escherichia coli APEC O78 hemolysin expression modulating protein YP_007379684.1 524257 R 1274814 CDS YP_007379685.1 443615829 14480487 524578..524931 1 NC_020163.1 COG4584 Transposase and inactivated derivatives; transposase 524931 14480487 APECO78_02510 Escherichia coli APEC O78 transposase YP_007379685.1 524578 D 1274814 CDS YP_007379686.1 443615830 14480488 524943..525692 1 NC_020163.1 COG1484 DNA replication protein; transposase 525692 14480488 APECO78_02515 Escherichia coli APEC O78 transposase YP_007379686.1 524943 D 1274814 CDS YP_007379687.1 443615831 14480489 526106..527728 1 NC_020163.1 COG0286 Type I restriction-modification system methyltransferase subunit; methyltransferase 527728 14480489 APECO78_02520 Escherichia coli APEC O78 methyltransferase YP_007379687.1 526106 D 1274814 CDS YP_007379688.1 443615832 14480490 527721..528911 1 NC_020163.1 COG0270 Site-specific DNA methylase; methyltransferase 528911 14480490 APECO78_02525 Escherichia coli APEC O78 methyltransferase YP_007379688.1 527721 D 1274814 CDS YP_007379689.1 443615833 14480491 complement(528924..530663) 1 NC_020163.1 COG1403 Restriction endonuclease; restriction endonuclease 530663 14480491 APECO78_02530 Escherichia coli APEC O78 restriction endonuclease YP_007379689.1 528924 R 1274814 CDS YP_007379690.1 443615834 14480492 complement(530773..532059) 1 NC_020163.1 COG4268 McrBC 5-methylcytosine restriction system component; hypothetical protein 532059 14480492 APECO78_02535 Escherichia coli APEC O78 hypothetical protein YP_007379690.1 530773 R 1274814 CDS YP_007379691.1 443615835 14480493 complement(532052..534127) 1 NC_020163.1 COG1401 GTPase subunit of restriction endonuclease; putative endonuclease 534127 14480493 APECO78_02540 Escherichia coli APEC O78 putative endonuclease YP_007379691.1 532052 R 1274814 CDS YP_007379692.1 443615836 14480494 complement(534548..534655) 1 NC_020163.1 hypothetical protein 534655 14480494 APECO78_02545 Escherichia coli APEC O78 hypothetical protein YP_007379692.1 534548 R 1274814 CDS YP_007379693.1 443615837 14480495 complement(535231..535485) 1 NC_020163.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; putative glycosyltransferase 535485 14480495 APECO78_02550 Escherichia coli APEC O78 putative glycosyltransferase YP_007379693.1 535231 R 1274814 CDS YP_007379694.1 443615838 14480496 complement(535492..535659) 1 NC_020163.1 hypothetical protein 535659 14480496 APECO78_02555 Escherichia coli APEC O78 hypothetical protein YP_007379694.1 535492 R 1274814 CDS YP_007379695.1 443615839 14480497 536285..537544 1 NC_020163.1 COG4857 Predicted kinase; methylthioribose kinase 537544 mtnK 14480497 mtnK Escherichia coli APEC O78 methylthioribose kinase YP_007379695.1 536285 D 1274814 CDS YP_007379696.1 443615840 14480498 537554..538669 1 NC_020163.1 COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family; putative translation initiation factor subunit protein 538669 14480498 APECO78_02565 Escherichia coli APEC O78 putative translation initiation factor subunit protein YP_007379696.1 537554 D 1274814 CDS YP_007379697.1 443615841 14480499 538700..539341 1 NC_020163.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-fuculose phosphate aldolase 539341 14480499 APECO78_02570 Escherichia coli APEC O78 L-fuculose phosphate aldolase YP_007379697.1 538700 D 1274814 CDS YP_007379698.1 443615842 14480500 539445..540449 1 NC_020163.1 COG4975 Putative glucose uptake permease; hypothetical protein 540449 14480500 APECO78_02575 Escherichia coli APEC O78 hypothetical protein YP_007379698.1 539445 D 1274814 CDS YP_007379699.1 443615843 14480501 complement(540490..541476) 1 NC_020163.1 COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; putative transcriptional regulator 541476 14480501 APECO78_02580 Escherichia coli APEC O78 putative transcriptional regulator YP_007379699.1 540490 R 1274814 CDS YP_007379700.1 443615844 14480502 complement(541514..541636) 1 NC_020163.1 hypothetical protein 541636 14480502 APECO78_02585 Escherichia coli APEC O78 hypothetical protein YP_007379700.1 541514 R 1274814 CDS YP_007379701.1 443615845 14480503 complement(541823..543172) 1 NC_020163.1 COG2610 H+/gluconate symporter and related permeases; putative transport protein 543172 14480503 APECO78_02590 Escherichia coli APEC O78 putative transport protein YP_007379701.1 541823 R 1274814 CDS YP_007379702.1 443615846 14480504 complement(543279..545246) 1 NC_020163.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dehydratase 545246 14480504 APECO78_02595 Escherichia coli APEC O78 dehydratase YP_007379702.1 543279 R 1274814 CDS YP_007379703.1 443615847 14480505 complement(545257..546162) 1 NC_020163.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; putative dihydrodipicolinate synthetase 546162 14480505 APECO78_02600 Escherichia coli APEC O78 putative dihydrodipicolinate synthetase YP_007379703.1 545257 R 1274814 CDS YP_007379704.1 443615848 14480506 complement(546167..546955) 1 NC_020163.1 COG1414 Transcriptional regulator; putative transcriptional regulator 546955 14480506 APECO78_02605 Escherichia coli APEC O78 putative transcriptional regulator YP_007379704.1 546167 R 1274814 CDS YP_007379705.1 443615849 14480507 complement(547258..548040) 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; putative transcriptional repressor 548040 14480507 APECO78_02610 Escherichia coli APEC O78 putative transcriptional repressor YP_007379705.1 547258 R 1274814 CDS YP_007379706.1 443615850 14480508 complement(548057..548689) 1 NC_020163.1 COG0036 Pentose-5-phosphate-3-epimerase; putative ribulose-phosphate 3-epimerase 548689 14480508 APECO78_02615 Escherichia coli APEC O78 putative ribulose-phosphate 3-epimerase YP_007379706.1 548057 R 1274814 CDS YP_007379707.1 443615851 14480509 complement(548701..549132) 1 NC_020163.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system IIA component 549132 14480509 APECO78_02620 Escherichia coli APEC O78 PTS system IIA component YP_007379707.1 548701 R 1274814 CDS YP_007379708.1 443615852 14480510 complement(549263..550069) 1 NC_020163.1 COG0434 Predicted TIM-barrel enzyme; nucleoside triphosphatase 550069 14480510 APECO78_02625 Escherichia coli APEC O78 nucleoside triphosphatase YP_007379708.1 549263 R 1274814 CDS YP_007379709.1 443615853 14480511 complement(550082..551395) 1 NC_020163.1 COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system IIC component 551395 14480511 APECO78_02630 Escherichia coli APEC O78 PTS system IIC component YP_007379709.1 550082 R 1274814 CDS YP_007379710.1 443615854 14480512 complement(551407..551685) 1 NC_020163.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system IIB component 551685 14480512 APECO78_02635 Escherichia coli APEC O78 PTS system IIB component YP_007379710.1 551407 R 1274814 CDS YP_007379711.1 443615855 14480513 complement(551682..552803) 1 NC_020163.1 COG1363 Cellulase M and related proteins; hypothetical protein 552803 14480513 APECO78_02640 Escherichia coli APEC O78 hypothetical protein YP_007379711.1 551682 R 1274814 CDS YP_007379713.1 443615857 14480515 complement(553202..553462) 1 NC_020163.1 hypothetical protein 553462 14480515 APECO78_02650 Escherichia coli APEC O78 hypothetical protein YP_007379713.1 553202 R 1274814 CDS YP_007379714.1 443615858 14480516 complement(553590..554336) 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 554336 14480516 APECO78_02655 Escherichia coli APEC O78 hypothetical protein YP_007379714.1 553590 R 1274814 CDS YP_007379715.1 443615859 14480517 complement(554388..554939) 1 NC_020163.1 COG3153 Predicted acetyltransferase; putative acetyltransferase 554939 14480517 APECO78_02660 Escherichia coli APEC O78 putative acetyltransferase YP_007379715.1 554388 R 1274814 CDS YP_007379716.1 443615860 14480518 complement(554951..555208) 1 NC_020163.1 COG3811 Uncharacterized protein conserved in bacteria; hypothetical protein 555208 14480518 APECO78_02665 Escherichia coli APEC O78 hypothetical protein YP_007379716.1 554951 R 1274814 CDS YP_007379717.1 443615861 14480519 complement(555585..555848) 1 NC_020163.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; hypothetical protein 555848 14480519 APECO78_02670 Escherichia coli APEC O78 hypothetical protein YP_007379717.1 555585 R 1274814 CDS YP_007379718.1 443615862 14480520 555995..557188 1 NC_020163.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits; Putative phospholipase D 557188 14480520 APECO78_02675 Escherichia coli APEC O78 Putative phospholipase D YP_007379718.1 555995 D 1274814 CDS YP_007379719.1 443615863 14480521 complement(557771..558751) 1 NC_020163.1 hypothetical protein 558751 14480521 APECO78_02680 Escherichia coli APEC O78 hypothetical protein YP_007379719.1 557771 R 1274814 CDS YP_007379720.1 443615864 14480522 complement(558815..559921) 1 NC_020163.1 COG3055 Uncharacterized protein conserved in bacteria; hypothetical protein 559921 14480522 APECO78_02685 Escherichia coli APEC O78 hypothetical protein YP_007379720.1 558815 R 1274814 CDS YP_007379721.1 443615865 14480523 complement(559941..560657) 1 NC_020163.1 hypothetical protein 560657 14480523 APECO78_02690 Escherichia coli APEC O78 hypothetical protein YP_007379721.1 559941 R 1274814 CDS YP_007379722.1 443615866 14480524 complement(561455..561700) 1 NC_020163.1 hypothetical protein 561700 14480524 APECO78_02695 Escherichia coli APEC O78 hypothetical protein YP_007379722.1 561455 R 1274814 CDS YP_007379723.1 443615867 14480525 562111..562713 1 NC_020163.1 COG0582 Integrase; tyrosine recombinase 562713 14480525 APECO78_02700 Escherichia coli APEC O78 tyrosine recombinase YP_007379723.1 562111 D 1274814 CDS YP_007379724.1 443615868 14480526 563191..563787 1 NC_020163.1 COG0582 Integrase; type 1 fimbriae regulator 563787 14480526 APECO78_02705 Escherichia coli APEC O78 type 1 fimbriae regulator YP_007379724.1 563191 D 1274814 CDS YP_007379725.1 443615869 14480527 564268..564816 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; type 1 fimbriae major subunit FimA 564816 14480527 APECO78_02710 Escherichia coli APEC O78 type 1 fimbriae major subunit FimA YP_007379725.1 564268 D 1274814 CDS YP_007379726.1 443615870 14480528 564881..565420 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein involved in type 1 pilus biosynthesis 565420 14480528 APECO78_02715 Escherichia coli APEC O78 fimbrial protein involved in type 1 pilus biosynthesis YP_007379726.1 564881 D 1274814 CDS YP_007379727.1 443615871 14480529 565457..566182 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; chaperone FimC, periplasmic 566182 14480529 APECO78_02720 Escherichia coli APEC O78 chaperone FimC, periplasmic YP_007379727.1 565457 D 1274814 CDS YP_007379728.1 443615872 14480530 566249..568885 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein, type 1 fimbrial synthesis 568885 14480530 APECO78_02725 Escherichia coli APEC O78 outer membrane usher protein, type 1 fimbrial synthesis YP_007379728.1 566249 D 1274814 CDS YP_007379729.1 443615873 14480531 568895..569425 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; minor component of type 1 fimbriae 569425 14480531 APECO78_02730 Escherichia coli APEC O78 minor component of type 1 fimbriae YP_007379729.1 568895 D 1274814 CDS YP_007379730.1 443615874 14480532 569438..569941 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; minor component of type 1 fimbriae 569941 14480532 APECO78_02735 Escherichia coli APEC O78 minor component of type 1 fimbriae YP_007379730.1 569438 D 1274814 CDS YP_007379731.1 443615875 14480533 569961..570863 1 NC_020163.1 adhesin 570863 14480533 APECO78_02740 Escherichia coli APEC O78 adhesin YP_007379731.1 569961 D 1274814 CDS YP_007379732.1 443615876 14480534 complement(571106..572449) 1 NC_020163.1 COG2610 H+/gluconate symporter and related permeases; fructuronate transporter 572449 14480534 APECO78_02745 Escherichia coli APEC O78 fructuronate transporter YP_007379732.1 571106 R 1274814 CDS YP_007379733.1 443615877 14480535 572789..573973 1 NC_020163.1 COG1312 D-mannonate dehydratase; mannonate dehydratase 573973 14480535 APECO78_02750 Escherichia coli APEC O78 mannonate dehydratase YP_007379733.1 572789 D 1274814 CDS YP_007379734.1 443615878 14480536 574054..575514 1 NC_020163.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; D-mannonate oxidoreductase 575514 14480536 APECO78_02755 Escherichia coli APEC O78 D-mannonate oxidoreductase YP_007379734.1 574054 D 1274814 CDS YP_007379735.1 443615879 14480537 complement(575536..575730) 1 NC_020163.1 hypothetical protein 575730 14480537 APECO78_02760 Escherichia coli APEC O78 hypothetical protein YP_007379735.1 575536 R 1274814 CDS YP_007379736.1 443615880 14480538 575729..576502 1 NC_020163.1 COG2186 Transcriptional regulators; DNA-binding transcriptional repressor UxuR 576502 14480538 APECO78_02765 Escherichia coli APEC O78 DNA-binding transcriptional repressor UxuR YP_007379736.1 575729 D 1274814 CDS YP_007379737.1 443615881 14480539 complement(576643..577473) 1 NC_020163.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; hypothetical protein 577473 14480539 APECO78_02770 Escherichia coli APEC O78 hypothetical protein YP_007379737.1 576643 R 1274814 CDS YP_007379738.1 443615882 14480540 578146..578538 1 NC_020163.1 DNA replication/recombination/repair protein 578538 14480540 APECO78_02775 Escherichia coli APEC O78 DNA replication/recombination/repair protein YP_007379738.1 578146 D 1274814 CDS YP_007379739.1 443615883 14480541 complement(578531..579442) 1 NC_020163.1 COG0583 Transcriptional regulator; cell density-dependent motility repressor 579442 14480541 APECO78_02780 Escherichia coli APEC O78 cell density-dependent motility repressor YP_007379739.1 578531 R 1274814 CDS YP_007379740.1 443615884 14480542 complement(579507..580679) 1 NC_020163.1 COG0044 Dihydroorotase and related cyclic amidohydrolases; isoaspartyl dipeptidase 580679 14480542 APECO78_02785 Escherichia coli APEC O78 isoaspartyl dipeptidase YP_007379740.1 579507 R 1274814 CDS YP_007379741.1 443615885 14480543 complement(580692..581153) 1 NC_020163.1 COG0700 Uncharacterized membrane protein; hypothetical protein 581153 14480543 APECO78_02790 Escherichia coli APEC O78 hypothetical protein YP_007379741.1 580692 R 1274814 CDS YP_007379742.1 443615886 14480544 complement(581150..581833) 1 NC_020163.1 COG3314 Uncharacterized protein conserved in bacteria; hypothetical protein 581833 14480544 APECO78_02795 Escherichia coli APEC O78 hypothetical protein YP_007379742.1 581150 R 1274814 CDS YP_007379743.1 443615887 14480545 582083..582637 1 NC_020163.1 COG1859 RNA:NAD 2'-phosphotransferase; RNA 2'-phosphotransferase 582637 14480545 APECO78_02800 Escherichia coli APEC O78 RNA 2'-phosphotransferase YP_007379743.1 582083 D 1274814 CDS YP_007379744.1 443615888 14480546 complement(582650..583828) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; inner membrane protein 583828 14480546 APECO78_02805 Escherichia coli APEC O78 inner membrane protein YP_007379744.1 582650 R 1274814 CDS YP_007379745.1 443615889 14480547 complement(583896..584867) 1 NC_020163.1 COG3204 Uncharacterized protein conserved in bacteria; hypothetical protein 584867 14480547 APECO78_02810 Escherichia coli APEC O78 hypothetical protein YP_007379745.1 583896 R 1274814 CDS YP_007379746.1 443615890 14480548 complement(584821..585078) 1 NC_020163.1 hypothetical protein 585078 14480548 APECO78_02815 Escherichia coli APEC O78 hypothetical protein YP_007379746.1 584821 R 1274814 CDS YP_007379747.1 443615891 14480549 complement(585075..585842) 1 NC_020163.1 COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); hypothetical protein 585842 14480549 APECO78_02820 Escherichia coli APEC O78 hypothetical protein YP_007379747.1 585075 R 1274814 CDS YP_007379748.1 443615892 14480550 complement(585852..587003) 1 NC_020163.1 COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; putative 2-hydroxyglutaryl-CoA dehydratase 587003 14480550 APECO78_02825 Escherichia coli APEC O78 putative 2-hydroxyglutaryl-CoA dehydratase YP_007379748.1 585852 R 1274814 CDS YP_007379749.1 443615893 14480551 complement(587119..588399) 1 NC_020163.1 COG2733 Predicted membrane protein; inner membrane protein 588399 14480551 APECO78_02830 Escherichia coli APEC O78 inner membrane protein YP_007379749.1 587119 R 1274814 CDS YP_007379750.1 443615894 14480552 complement(588440..589672) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtM 589672 14480552 APECO78_02835 Escherichia coli APEC O78 multidrug efflux system protein MdtM YP_007379750.1 588440 R 1274814 CDS YP_007379751.1 443615895 14480553 590139..591095 1 NC_020163.1 hypothetical protein 591095 14480553 APECO78_02840 Escherichia coli APEC O78 hypothetical protein YP_007379751.1 590139 D 1274814 CDS YP_007379752.1 443615896 14480554 complement(591338..592750) 1 NC_020163.1 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; fused putative DNA-binding transcriptional regulator/putative amino transferase 592750 14480554 APECO78_02845 Escherichia coli APEC O78 fused putative DNA-binding transcriptional regulator/putative amino transferase YP_007379752.1 591338 R 1274814 CDS YP_007379753.1 443615897 14480555 592927..593091 1 NC_020163.1 protein YjiS 593091 14480555 APECO78_02850 Escherichia coli APEC O78 protein YjiS YP_007379753.1 592927 D 1274814 CDS YP_007379754.1 443615898 14480556 593443..595983 1 NC_020163.1 COG2366 Protein related to penicillin acylase; penicillin G acylase 595983 14480556 APECO78_02855 Escherichia coli APEC O78 penicillin G acylase YP_007379754.1 593443 D 1274814 CDS YP_007379755.1 443615899 14480557 complement(596061..597017) 1 NC_020163.1 COG0523 Putative GTPases (G3E family); GTP-binding protein YjiA 597017 14480557 APECO78_02860 Escherichia coli APEC O78 GTP-binding protein YjiA YP_007379755.1 596061 R 1274814 CDS YP_007379756.1 443615900 14480558 complement(597028..597231) 1 NC_020163.1 COG2879 Uncharacterized small protein; hypothetical protein 597231 14480558 APECO78_02865 Escherichia coli APEC O78 hypothetical protein YP_007379756.1 597028 R 1274814 CDS YP_007379757.1 443615901 14480559 complement(597281..599431) 1 NC_020163.1 COG1966 Carbon starvation protein, predicted membrane protein; putative carbon starvation protein 599431 14480559 APECO78_02870 Escherichia coli APEC O78 putative carbon starvation protein YP_007379757.1 597281 R 1274814 CDS YP_007379758.1 443615902 14480560 complement(599824..600336) 1 NC_020163.1 COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; 4-hydroxyphenylacetate 3-monooxygenase, reductase component 600336 14480560 APECO78_02875 Escherichia coli APEC O78 4-hydroxyphenylacetate 3-monooxygenase, reductase component YP_007379758.1 599824 R 1274814 CDS YP_007379759.1 443615903 14480561 complement(600354..601916) 1 NC_020163.1 COG2368 Aromatic ring hydroxylase; 4-hydroxyphenylacetic hydroxylase 601916 14480561 APECO78_02880 Escherichia coli APEC O78 4-hydroxyphenylacetic hydroxylase YP_007379759.1 600354 R 1274814 CDS YP_007379760.1 443615904 14480562 complement(602167..603057) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; regulator of the 4HPA-hydroxylase operon 603057 14480562 APECO78_02885 Escherichia coli APEC O78 regulator of the 4HPA-hydroxylase operon YP_007379760.1 602167 R 1274814 CDS YP_007379761.1 443615905 14480563 complement(603067..604443) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative 4-hydroxyphenylacetate permease 604443 14480563 APECO78_02890 Escherichia coli APEC O78 putative 4-hydroxyphenylacetate permease YP_007379761.1 603067 R 1274814 CDS YP_007379762.1 443615906 14480564 complement(604618..605406) 1 NC_020163.1 COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 605406 14480564 APECO78_02895 Escherichia coli APEC O78 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_007379762.1 604618 R 1274814 CDS YP_007379763.1 443615907 14480565 complement(605417..606220) 1 NC_020163.1 COG3971 2-keto-4-pentenoate hydratase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 606220 14480565 APECO78_02900 Escherichia coli APEC O78 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_007379763.1 605417 R 1274814 CDS YP_007379764.1 443615908 14480566 complement(606288..606668) 1 NC_020163.1 COG3232 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 606668 14480566 APECO78_02905 Escherichia coli APEC O78 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_007379764.1 606288 R 1274814 CDS YP_007379765.1 443615909 14480567 complement(606678..607529) 1 NC_020163.1 COG3384 Uncharacterized conserved protein; Homoprotocatechuate dyoxygenase 607529 14480567 APECO78_02910 Escherichia coli APEC O78 Homoprotocatechuate dyoxygenase YP_007379765.1 606678 R 1274814 CDS YP_007379766.1 443615910 14480568 complement(607531..608997) 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 608997 14480568 APECO78_02915 Escherichia coli APEC O78 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_007379766.1 607531 R 1274814 CDS YP_007379767.1 443615911 14480569 complement(608994..610283) 1 NC_020163.1 COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase 610283 14480569 APECO78_02920 Escherichia coli APEC O78 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase YP_007379767.1 608994 R 1274814 CDS YP_007379768.1 443615912 14480570 610555..611001 1 NC_020163.1 COG1846 Transcriptional regulators; homoprotocatechuate degradation operon regulator 611001 14480570 APECO78_02925 Escherichia coli APEC O78 homoprotocatechuate degradation operon regulator YP_007379768.1 610555 D 1274814 CDS YP_007379769.1 443615913 14480571 611120..612775 1 NC_020163.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein I, serine sensor receptor 612775 14480571 APECO78_02930 Escherichia coli APEC O78 methyl-accepting chemotaxis protein I, serine sensor receptor YP_007379769.1 611120 D 1274814 CDS YP_007379770.1 443615914 14480572 complement(612824..614185) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative transporter 614185 14480572 APECO78_02935 Escherichia coli APEC O78 putative transporter YP_007379770.1 612824 R 1274814 CDS YP_007379771.1 443615915 14480573 complement(614400..615314) 1 NC_020163.1 COG1802 Transcriptional regulators; GntR family transcriptional regulator 615314 14480573 APECO78_02940 Escherichia coli APEC O78 GntR family transcriptional regulator YP_007379771.1 614400 R 1274814 CDS YP_007379772.1 443615916 14480574 615453..616475 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase 616475 14480574 APECO78_02945 Escherichia coli APEC O78 oxidoreductase YP_007379772.1 615453 D 1274814 CDS YP_007379773.1 443615917 14480575 complement(616615..618906) 1 NC_020163.1 COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; phosphoglycerol transferase I 618906 14480575 APECO78_02950 Escherichia coli APEC O78 phosphoglycerol transferase I YP_007379773.1 616615 R 1274814 CDS YP_007379774.1 443615918 14480576 complement(619160..619657) 1 NC_020163.1 hypothetical protein 619657 14480576 APECO78_02955 Escherichia coli APEC O78 hypothetical protein YP_007379774.1 619160 R 1274814 CDS YP_007379775.1 443615919 14480577 complement(619703..620440) 1 NC_020163.1 COG1484 DNA replication protein; DNA replication protein DnaC 620440 14480577 APECO78_02960 Escherichia coli APEC O78 DNA replication protein DnaC YP_007379775.1 619703 R 1274814 CDS YP_007379776.1 443615920 14480578 complement(620443..620982) 1 NC_020163.1 Primosomal protein 1 620982 14480578 APECO78_02965 Escherichia coli APEC O78 Primosomal protein 1 YP_007379776.1 620443 R 1274814 CDS YP_007379777.1 443615921 14480579 complement(621089..621562) 1 NC_020163.1 COG3610 Uncharacterized conserved protein; hypothetical protein 621562 14480579 APECO78_02970 Escherichia coli APEC O78 hypothetical protein YP_007379777.1 621089 R 1274814 CDS YP_007379778.1 443615922 14480580 complement(621553..622323) 1 NC_020163.1 COG2966 Uncharacterized conserved protein; hypothetical protein 622323 14480580 APECO78_02975 Escherichia coli APEC O78 hypothetical protein YP_007379778.1 621553 R 1274814 CDS YP_007379779.1 443615923 14480581 622942..623667 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional regulator 623667 14480581 APECO78_02980 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007379779.1 622942 D 1274814 CDS YP_007379780.1 443615924 14480582 623679..624302 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; LuxR family transcriptional regulator 624302 14480582 APECO78_02985 Escherichia coli APEC O78 LuxR family transcriptional regulator YP_007379780.1 623679 D 1274814 CDS YP_007379781.1 443615925 14480583 complement(624340..625128) 1 NC_020163.1 COG4114 Uncharacterized Fe-S protein; ferric iron reductase involved in ferric hydroximate transport 625128 14480583 APECO78_02990 Escherichia coli APEC O78 ferric iron reductase involved in ferric hydroximate transport YP_007379781.1 624340 R 1274814 CDS YP_007379782.1 443615926 14480584 625269..625505 1 NC_020163.1 hypothetical protein 625505 14480584 APECO78_02995 Escherichia coli APEC O78 hypothetical protein YP_007379782.1 625269 D 1274814 CDS YP_007379783.1 443615927 14484592 complement(626134..627165) 1 NC_020163.1 COG2813 16S RNA G1207 methylase RsmC; 16S ribosomal RNA m2G1207 methyltransferase 627165 rsmC 14484592 rsmC Escherichia coli APEC O78 16S ribosomal RNA m2G1207 methyltransferase YP_007379783.1 626134 R 1274814 CDS YP_007379784.1 443615928 14480586 627268..627681 1 NC_020163.1 COG3050 DNA polymerase III, psi subunit; DNA polymerase III subunit psi 627681 14480586 APECO78_03005 Escherichia coli APEC O78 DNA polymerase III subunit psi YP_007379784.1 627268 D 1274814 CDS YP_007379785.1 443615929 14480587 627650..628096 1 NC_020163.1 COG0456 Acetyltransferases; ribosomal-protein-alanine N-acetyltransferase 628096 rimI 14480587 rimI Escherichia coli APEC O78 ribosomal-protein-alanine N-acetyltransferase YP_007379785.1 627650 D 1274814 CDS YP_007379786.1 443615930 14480588 628111..628788 1 NC_020163.1 COG1011 Predicted hydrolase (HAD superfamily); dUMP phosphatase 628788 14480588 APECO78_03015 Escherichia coli APEC O78 dUMP phosphatase YP_007379786.1 628111 D 1274814 CDS YP_007379787.1 443615931 14480589 629174..630397 1 NC_020163.1 COG0582 Integrase; site-specific recombinase, phage integrase family protein 630397 14480589 APECO78_03020 Escherichia coli APEC O78 site-specific recombinase, phage integrase family protein YP_007379787.1 629174 D 1274814 CDS YP_007379788.1 443615932 14480590 630582..631823 1 NC_020163.1 hypothetical protein 631823 14480590 APECO78_03025 Escherichia coli APEC O78 hypothetical protein YP_007379788.1 630582 D 1274814 CDS YP_007379789.1 443615933 14480591 complement(632300..632647) 1 NC_020163.1 hypothetical protein 632647 14480591 APECO78_03030 Escherichia coli APEC O78 hypothetical protein YP_007379789.1 632300 R 1274814 CDS YP_007379790.1 443615934 14480592 complement(632644..633522) 1 NC_020163.1 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; phosphoadenosine phosphosulfate reductase family protein 633522 14480592 APECO78_03035 Escherichia coli APEC O78 phosphoadenosine phosphosulfate reductase family protein YP_007379790.1 632644 R 1274814 CDS YP_007379791.1 443615935 14480593 complement(633513..634049) 1 NC_020163.1 COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 634049 14480593 APECO78_03040 Escherichia coli APEC O78 hypothetical protein YP_007379791.1 633513 R 1274814 CDS YP_007379792.1 443615936 14480594 complement(634178..635002) 1 NC_020163.1 COG5532 Uncharacterized conserved protein; hypothetical protein 635002 14480594 APECO78_03045 Escherichia coli APEC O78 hypothetical protein YP_007379792.1 634178 R 1274814 CDS YP_007379793.1 443615937 14480595 complement(635067..635429) 1 NC_020163.1 hypothetical protein 635429 14480595 APECO78_03050 Escherichia coli APEC O78 hypothetical protein YP_007379793.1 635067 R 1274814 CDS YP_007379794.1 443615938 14480596 635620..635718 1 NC_020163.1 hypothetical protein 635718 14480596 APECO78_03055 Escherichia coli APEC O78 hypothetical protein YP_007379794.1 635620 D 1274814 CDS YP_007379795.1 443615939 14480597 complement(636175..636849) 1 NC_020163.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); peptidase, S-24 domain protein 636849 14480597 APECO78_03060 Escherichia coli APEC O78 peptidase, S-24 domain protein YP_007379795.1 636175 R 1274814 CDS YP_007379796.1 443615940 14480598 636940..637140 1 NC_020163.1 DNA-binding transcriptional regulator 637140 14480598 APECO78_03065 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007379796.1 636940 D 1274814 CDS YP_007379797.1 443615941 14480599 637184..637735 1 NC_020163.1 hypothetical protein 637735 14480599 APECO78_03070 Escherichia coli APEC O78 hypothetical protein YP_007379797.1 637184 D 1274814 CDS YP_007379798.1 443615942 14480600 637732..638568 1 NC_020163.1 Immunity region from phage 638568 14480600 APECO78_03075 Escherichia coli APEC O78 Immunity region from phage YP_007379798.1 637732 D 1274814 CDS YP_007379799.1 443615943 14480601 638573..638797 1 NC_020163.1 hypothetical protein 638797 14480601 APECO78_03080 Escherichia coli APEC O78 hypothetical protein YP_007379799.1 638573 D 1274814 CDS YP_007379800.1 443615944 14480602 638794..639612 1 NC_020163.1 replication protein 639612 14480602 APECO78_03085 Escherichia coli APEC O78 replication protein YP_007379800.1 638794 D 1274814 CDS YP_007379801.1 443615945 14480603 639609..640103 1 NC_020163.1 hypothetical protein 640103 14480603 APECO78_03090 Escherichia coli APEC O78 hypothetical protein YP_007379801.1 639609 D 1274814 CDS YP_007379802.1 443615946 14480604 640103..640756 1 NC_020163.1 phage AdoMet-dependent methyltransferase 640756 14480604 APECO78_03095 Escherichia coli APEC O78 phage AdoMet-dependent methyltransferase YP_007379802.1 640103 D 1274814 CDS YP_007379803.1 443615947 14480605 640753..641079 1 NC_020163.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein 641079 14480605 APECO78_03100 Escherichia coli APEC O78 hypothetical protein YP_007379803.1 640753 D 1274814 CDS YP_007379804.1 443615948 14480606 641076..641465 1 NC_020163.1 COG4570 Holliday junction resolvase; holliday junction resolvase 641465 14480606 APECO78_03105 Escherichia coli APEC O78 holliday junction resolvase YP_007379804.1 641076 D 1274814 CDS YP_007379805.1 443615949 14480607 641485..642294 1 NC_020163.1 KilA-N domain protein 642294 14480607 APECO78_03110 Escherichia coli APEC O78 KilA-N domain protein YP_007379805.1 641485 D 1274814 CDS YP_007379806.1 443615950 14480608 642296..643291 1 NC_020163.1 hypothetical protein 643291 14480608 APECO78_03115 Escherichia coli APEC O78 hypothetical protein YP_007379806.1 642296 D 1274814 CDS YP_007379807.1 443615951 14480609 643305..644057 1 NC_020163.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; prophage antitermination protein 644057 14480609 APECO78_03120 Escherichia coli APEC O78 prophage antitermination protein YP_007379807.1 643305 D 1274814 CDS YP_007379808.1 443615952 14480610 644208..644465 1 NC_020163.1 phage membrane protein 644465 14480610 APECO78_03125 Escherichia coli APEC O78 phage membrane protein YP_007379808.1 644208 D 1274814 CDS YP_007379809.1 443615953 14480611 644545..644931 1 NC_020163.1 phage membrane protein 644931 14480611 APECO78_03130 Escherichia coli APEC O78 phage membrane protein YP_007379809.1 644545 D 1274814 CDS YP_007379810.1 443615954 14480612 644918..645199 1 NC_020163.1 phage membrane protein 645199 14480612 APECO78_03135 Escherichia coli APEC O78 phage membrane protein YP_007379810.1 644918 D 1274814 CDS YP_007379811.1 443615955 14480613 645199..645813 1 NC_020163.1 COG3179 Predicted chitinase; phage endolysin 645813 14480613 APECO78_03140 Escherichia coli APEC O78 phage endolysin YP_007379811.1 645199 D 1274814 CDS YP_007379812.1 443615956 14480614 645810..646271 1 NC_020163.1 Putative endopeptidase 646271 14480614 APECO78_03145 Escherichia coli APEC O78 Putative endopeptidase YP_007379812.1 645810 D 1274814 CDS YP_007379813.1 443615957 14480615 646474..647004 1 NC_020163.1 hypothetical protein 647004 14480615 APECO78_03150 Escherichia coli APEC O78 hypothetical protein YP_007379813.1 646474 D 1274814 CDS YP_007379814.1 443615958 14480616 647320..647670 1 NC_020163.1 COG1403 Restriction endonuclease; phage protein 647670 14480616 APECO78_03155 Escherichia coli APEC O78 phage protein YP_007379814.1 647320 D 1274814 CDS YP_007379815.1 443615959 14480617 647796..648281 1 NC_020163.1 COG3747 Phage terminase, small subunit; phage terminase small subunit 648281 14480617 APECO78_03160 Escherichia coli APEC O78 phage terminase small subunit YP_007379815.1 647796 D 1274814 CDS YP_007379816.1 443615960 14480618 648295..650028 1 NC_020163.1 COG4626 Phage terminase-like protein, large subunit; putative terminase, large subunit 650028 14480618 APECO78_03165 Escherichia coli APEC O78 putative terminase, large subunit YP_007379816.1 648295 D 1274814 CDS YP_007379817.1 443615961 14480619 650025..650186 1 NC_020163.1 hypothetical protein 650186 14480619 APECO78_03170 Escherichia coli APEC O78 hypothetical protein YP_007379817.1 650025 D 1274814 CDS YP_007379818.1 443615962 14480620 650176..651402 1 NC_020163.1 COG4695 Phage-related protein; putative phage portal protein 651402 14480620 APECO78_03175 Escherichia coli APEC O78 putative phage portal protein YP_007379818.1 650176 D 1274814 CDS YP_007379819.1 443615963 14480621 651395..651997 1 NC_020163.1 COG3740 Phage head maturation protease; putative capsid protease 651997 14480621 APECO78_03180 Escherichia coli APEC O78 putative capsid protease YP_007379819.1 651395 D 1274814 CDS YP_007379820.1 443615964 14480622 652008..653237 1 NC_020163.1 COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; phage capsid protein 653237 14480622 APECO78_03185 Escherichia coli APEC O78 phage capsid protein YP_007379820.1 652008 D 1274814 CDS YP_007379821.1 443615965 14480623 653316..653639 1 NC_020163.1 hypothetical protein 653639 14480623 APECO78_03190 Escherichia coli APEC O78 hypothetical protein YP_007379821.1 653316 D 1274814 CDS YP_007379822.1 443615966 14480624 653636..654046 1 NC_020163.1 hypothetical protein 654046 14480624 APECO78_03195 Escherichia coli APEC O78 hypothetical protein YP_007379822.1 653636 D 1274814 CDS YP_007379823.1 443615967 14480625 654021..654527 1 NC_020163.1 prophage protein 654527 14480625 APECO78_03200 Escherichia coli APEC O78 prophage protein YP_007379823.1 654021 D 1274814 CDS YP_007379824.1 443615968 14480626 654524..655084 1 NC_020163.1 bacteriophage protein 655084 14480626 APECO78_03205 Escherichia coli APEC O78 bacteriophage protein YP_007379824.1 654524 D 1274814 CDS YP_007379825.1 443615969 14480627 655093..655263 1 NC_020163.1 hypothetical protein 655263 14480627 APECO78_03210 Escherichia coli APEC O78 hypothetical protein YP_007379825.1 655093 D 1274814 CDS YP_007379826.1 443615970 14480628 655247..656743 1 NC_020163.1 COG4386 Mu-like prophage tail sheath protein gpL; sheath protein 656743 14480628 APECO78_03215 Escherichia coli APEC O78 sheath protein YP_007379826.1 655247 D 1274814 CDS YP_007379827.1 443615971 14480629 656743..657099 1 NC_020163.1 phage protein 657099 14480629 APECO78_03220 Escherichia coli APEC O78 phage protein YP_007379827.1 656743 D 1274814 CDS YP_007379828.1 443615972 14480630 657099..657368 1 NC_020163.1 bacteriophage protein 657368 14480630 APECO78_03225 Escherichia coli APEC O78 bacteriophage protein YP_007379828.1 657099 D 1274814 CDS YP_007379829.1 443615973 14480631 657510..659345 1 NC_020163.1 tail protein 659345 14480631 APECO78_03230 Escherichia coli APEC O78 tail protein YP_007379829.1 657510 D 1274814 CDS YP_007379830.1 443615974 14480632 659406..660734 1 NC_020163.1 COG4228 Mu-like prophage DNA circulation protein; tail/DNA circulation protein 660734 14480632 APECO78_03235 Escherichia coli APEC O78 tail/DNA circulation protein YP_007379830.1 659406 D 1274814 CDS YP_007379831.1 443615975 14480633 660731..661810 1 NC_020163.1 COG4379 Mu-like prophage tail protein gpP; putative phage tail protein 661810 14480633 APECO78_03240 Escherichia coli APEC O78 putative phage tail protein YP_007379831.1 660731 D 1274814 CDS YP_007379832.1 443615976 14480634 661810..662358 1 NC_020163.1 COG4384 Mu-like prophage protein gp45; putative baseplate assembly phage protein 662358 14480634 APECO78_03245 Escherichia coli APEC O78 putative baseplate assembly phage protein YP_007379832.1 661810 D 1274814 CDS YP_007379833.1 443615977 14480635 662355..662783 1 NC_020163.1 COG4381 Mu-like prophage protein gp46; bacteriophage v tail protein 662783 14480635 APECO78_03250 Escherichia coli APEC O78 bacteriophage v tail protein YP_007379833.1 662355 D 1274814 CDS YP_007379834.1 443615978 14480636 662770..663828 1 NC_020163.1 COG3299 Uncharacterized homolog of phage Mu protein gp47; bacteriophage v tail protein 663828 14480636 APECO78_03255 Escherichia coli APEC O78 bacteriophage v tail protein YP_007379834.1 662770 D 1274814 CDS YP_007379835.1 443615979 14480637 663819..664403 1 NC_020163.1 COG3778 Uncharacterized protein conserved in bacteria; putative phage tail protein 664403 14480637 APECO78_03260 Escherichia coli APEC O78 putative phage tail protein YP_007379835.1 663819 D 1274814 CDS YP_007379836.1 443615980 14480638 664407..665057 1 NC_020163.1 tail fiber protein 665057 14480638 APECO78_03265 Escherichia coli APEC O78 tail fiber protein YP_007379836.1 664407 D 1274814 CDS YP_007379837.1 443615981 14480639 665061..665480 1 NC_020163.1 putative phage tail assembly chaperone 665480 14480639 APECO78_03270 Escherichia coli APEC O78 putative phage tail assembly chaperone YP_007379837.1 665061 D 1274814 CDS YP_007379838.1 443615982 14480640 complement(665452..666045) 1 NC_020163.1 hypothetical protein 666045 14480640 APECO78_03275 Escherichia coli APEC O78 hypothetical protein YP_007379838.1 665452 R 1274814 CDS YP_007379839.1 443615983 14480641 complement(666045..666539) 1 NC_020163.1 putative tail fiber protein 666539 14480641 APECO78_03280 Escherichia coli APEC O78 putative tail fiber protein YP_007379839.1 666045 R 1274814 CDS YP_007379840.1 443615984 14480642 complement(666569..667474) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 667474 14480642 APECO78_03285 Escherichia coli APEC O78 IS2 transposase TnpB YP_007379840.1 666569 R 1274814 CDS YP_007379841.1 443615985 14480643 complement(667432..667797) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 667797 14480643 APECO78_03290 Escherichia coli APEC O78 IS2 repressor TnpA YP_007379841.1 667432 R 1274814 CDS YP_007379842.1 443615986 14480644 667905..668261 1 NC_020163.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; putative pinE invertase/site-specific DNA recombinase 668261 14480644 APECO78_03295 Escherichia coli APEC O78 putative pinE invertase/site-specific DNA recombinase YP_007379842.1 667905 D 1274814 CDS YP_007379843.1 443615987 14480645 complement(668475..669479) 1 NC_020163.1 COG0616 Periplasmic serine proteases (ClpP class); hypothetical protein 669479 14480645 APECO78_03300 Escherichia coli APEC O78 hypothetical protein YP_007379843.1 668475 R 1274814 CDS YP_007379844.1 443615988 14480646 complement(669788..670036) 1 NC_020163.1 DNA-damage-inducible protein 670036 14480646 APECO78_03305 Escherichia coli APEC O78 DNA-damage-inducible protein YP_007379844.1 669788 R 1274814 CDS YP_007379845.1 443615989 14480647 670256..671842 1 NC_020163.1 COG4108 Peptide chain release factor RF-3; peptide chain release factor 3 671842 prfC 14480647 prfC Escherichia coli APEC O78 peptide chain release factor 3 YP_007379845.1 670256 D 1274814 CDS YP_007379846.1 443615990 14480648 672235..672840 1 NC_020163.1 COG2823 Predicted periplasmic or secreted lipoprotein; hypothetical protein 672840 14480648 APECO78_03315 Escherichia coli APEC O78 hypothetical protein YP_007379846.1 672235 D 1274814 CDS YP_007379847.1 443615991 14480649 672967..673128 1 NC_020163.1 hypothetical protein 673128 14480649 APECO78_03320 Escherichia coli APEC O78 hypothetical protein YP_007379847.1 672967 D 1274814 CDS YP_007379848.1 443615992 14480650 673250..674323 1 NC_020163.1 COG4667 Predicted esterase of the alpha-beta hydrolase superfamily; hypothetical protein 674323 14480650 APECO78_03325 Escherichia coli APEC O78 hypothetical protein YP_007379848.1 673250 D 1274814 CDS YP_007379849.1 443615993 14480651 674320..675102 1 NC_020163.1 COG0084 Mg-dependent DNase; deoxyribonuclease YjjV 675102 14480651 APECO78_03330 Escherichia coli APEC O78 deoxyribonuclease YjjV YP_007379849.1 674320 D 1274814 CDS YP_007379850.1 443615994 14480652 complement(675417..676280) 1 NC_020163.1 COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase activating enzyme 676280 14480652 APECO78_03335 Escherichia coli APEC O78 pyruvate formate lyase activating enzyme YP_007379850.1 675417 R 1274814 CDS YP_007379851.1 443615995 14480653 complement(676252..677802) 1 NC_020163.1 hypothetical protein 677802 14480653 APECO78_03340 Escherichia coli APEC O78 hypothetical protein YP_007379851.1 676252 R 1274814 CDS YP_007379852.1 443615996 14480654 677854..677955 1 NC_020163.1 hypothetical protein 677955 14480654 APECO78_03345 Escherichia coli APEC O78 hypothetical protein YP_007379852.1 677854 D 1274814 CDS YP_007379853.1 443615997 14480655 678060..678839 1 NC_020163.1 COG0274 Deoxyribose-phosphate aldolase; deoxyribose-phosphate aldolase 678839 14480655 APECO78_03350 Escherichia coli APEC O78 deoxyribose-phosphate aldolase YP_007379853.1 678060 D 1274814 CDS YP_007379854.1 443615998 14480656 678966..679697 1 NC_020163.1 COG0213 Thymidine phosphorylase; thymidine phosphorylase 679697 deoA 14480656 deoA Escherichia coli APEC O78 thymidine phosphorylase YP_007379854.1 678966 D 1274814 CDS YP_007379855.1 443615999 14480657 679743..680288 1 NC_020163.1 COG0213 Thymidine phosphorylase; thymidine phosphorylase 680288 14480657 APECO78_03360 Escherichia coli APEC O78 thymidine phosphorylase YP_007379855.1 679743 D 1274814 CDS YP_007379856.1 443616000 14480658 680340..681563 1 NC_020163.1 COG1015 Phosphopentomutase; phosphopentomutase 681563 14480658 APECO78_03365 Escherichia coli APEC O78 phosphopentomutase YP_007379856.1 680340 D 1274814 CDS YP_007379857.1 443616001 14480659 681643..682362 1 NC_020163.1 COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase 682362 deoD 14480659 deoD Escherichia coli APEC O78 purine nucleoside phosphorylase YP_007379857.1 681643 D 1274814 CDS YP_007379858.1 443616002 14480660 complement(682637..682786) 1 NC_020163.1 hypothetical protein 682786 14480660 APECO78_03375 Escherichia coli APEC O78 hypothetical protein YP_007379858.1 682637 R 1274814 CDS YP_007379859.1 443616003 14480661 complement(682818..683834) 1 NC_020163.1 COG0095 Lipoate-protein ligase A; lipoate-protein ligase A 683834 14480661 APECO78_03380 Escherichia coli APEC O78 lipoate-protein ligase A YP_007379859.1 682818 R 1274814 CDS YP_007379860.1 443616004 14480662 complement(683862..684506) 1 NC_020163.1 COG3726 Uncharacterized membrane protein affecting hemolysin expression; hypothetical protein 684506 14480662 APECO78_03385 Escherichia coli APEC O78 hypothetical protein YP_007379860.1 683862 R 1274814 CDS YP_007379861.1 443616005 14480663 684612..685580 1 NC_020163.1 COG0560 Phosphoserine phosphatase; phosphoserine phosphatase 685580 serB 14480663 serB Escherichia coli APEC O78 phosphoserine phosphatase YP_007379861.1 684612 D 1274814 CDS YP_007379862.1 443616006 14480664 685629..687011 1 NC_020163.1 COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 687011 14480664 APECO78_03395 Escherichia coli APEC O78 DNA repair protein RadA YP_007379862.1 685629 D 1274814 CDS YP_007379863.1 443616007 14480665 687032..688264 1 NC_020163.1 COG1396 Predicted transcriptional regulators; bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase 688264 14480665 APECO78_03400 Escherichia coli APEC O78 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase YP_007379863.1 687032 D 1274814 CDS YP_007379864.1 443616008 14480666 complement(688571..690238) 1 NC_020163.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 690238 14480666 APECO78_03405 Escherichia coli APEC O78 ABC transporter ATP-binding protein YP_007379864.1 688571 R 1274814 CDS YP_007379865.1 443616009 14480667 690449..692386 1 NC_020163.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein transglycosylase 692386 14480667 APECO78_03410 Escherichia coli APEC O78 lytic murein transglycosylase YP_007379865.1 690449 D 1274814 CDS YP_007379866.1 443616010 14480668 692476..692802 1 NC_020163.1 COG2973 Trp operon repressor; Trp operon repressor 692802 14480668 APECO78_03415 Escherichia coli APEC O78 Trp operon repressor YP_007379866.1 692476 D 1274814 CDS YP_007379867.1 443616011 14480669 complement(692845..693357) 1 NC_020163.1 COG1986 Uncharacterized conserved protein; inosine/xanthosine triphosphatase 693357 14480669 APECO78_03420 Escherichia coli APEC O78 inosine/xanthosine triphosphatase YP_007379867.1 692845 R 1274814 CDS YP_007379868.1 443616012 14480670 693409..694056 1 NC_020163.1 COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 694056 14480670 APECO78_03425 Escherichia coli APEC O78 phosphoglycerate mutase YP_007379868.1 693409 D 1274814 CDS YP_007379869.1 443616013 14480671 complement(694053..694922) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; right oriC-binding transcriptional activator 694922 14480671 APECO78_03430 Escherichia coli APEC O78 right oriC-binding transcriptional activator YP_007379869.1 694053 R 1274814 CDS YP_007379870.1 443616014 14480672 695133..695606 1 NC_020163.1 COG3045 Uncharacterized protein conserved in bacteria; hypothetical protein 695606 14480672 APECO78_03435 Escherichia coli APEC O78 hypothetical protein YP_007379870.1 695133 D 1274814 CDS YP_007379871.1 443616015 14480673 695619..696308 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding response regulator CreB 696308 14480673 APECO78_03440 Escherichia coli APEC O78 DNA-binding response regulator CreB YP_007379871.1 695619 D 1274814 CDS YP_007379872.1 443616016 14480674 696308..697732 1 NC_020163.1 COG0642 Signal transduction histidine kinase; two-component system sensor kinase 697732 14480674 APECO78_03445 Escherichia coli APEC O78 two-component system sensor kinase YP_007379872.1 696308 D 1274814 CDS YP_007379873.1 443616017 14480675 697790..699142 1 NC_020163.1 COG4452 Inner membrane protein involved in colicin E2 resistance; hypothetical protein 699142 14480675 APECO78_03450 Escherichia coli APEC O78 hypothetical protein YP_007379873.1 697790 D 1274814 CDS YP_007379874.1 443616018 14480676 complement(699201..699917) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 699917 14480676 APECO78_03455 Escherichia coli APEC O78 two-component response regulator YP_007379874.1 699201 R 1274814 CDS YP_007379875.1 443616019 14480677 700553..701239 1 NC_020163.1 COG0565 rRNA methylase; RNA methyltransferase 701239 14480677 APECO78_03460 Escherichia coli APEC O78 RNA methyltransferase YP_007379875.1 700553 D 1274814 CDS YP_007379876.1 443616020 14480678 701599..704061 1 NC_020163.1 COG0527 Aspartokinases; bifunctional aspartokinase I/homoserine dehydrogenase I 704061 14480678 APECO78_03465 Escherichia coli APEC O78 bifunctional aspartokinase I/homoserine dehydrogenase I YP_007379876.1 701599 D 1274814 CDS YP_007379877.1 443616021 14480679 704063..704995 1 NC_020163.1 COG0083 Homoserine kinase; homoserine kinase 704995 14480679 APECO78_03470 Escherichia coli APEC O78 homoserine kinase YP_007379877.1 704063 D 1274814 CDS YP_007379878.1 443616022 14480680 704996..706282 1 NC_020163.1 COG0498 Threonine synthase; threonine synthase 706282 14480680 APECO78_03475 Escherichia coli APEC O78 threonine synthase YP_007379878.1 704996 D 1274814 CDS YP_007379879.1 443616023 14480681 706496..706792 1 NC_020163.1 hypothetical protein 706792 14480681 APECO78_03480 Escherichia coli APEC O78 hypothetical protein YP_007379879.1 706496 D 1274814 CDS YP_007379880.1 443616024 14480682 complement(706945..707721) 1 NC_020163.1 COG3022 Uncharacterized protein conserved in bacteria; hypothetical protein 707721 14480682 APECO78_03485 Escherichia coli APEC O78 hypothetical protein YP_007379880.1 706945 R 1274814 CDS YP_007379881.1 443616025 14480683 complement(707791..709221) 1 NC_020163.1 COG1115 Na+/alanine symporter; transporter 709221 14480683 APECO78_03490 Escherichia coli APEC O78 transporter YP_007379881.1 707791 R 1274814 CDS YP_007379882.1 443616026 14480684 709500..710453 1 NC_020163.1 COG0176 Transaldolase; transaldolase B 710453 14480684 APECO78_03495 Escherichia coli APEC O78 transaldolase B YP_007379882.1 709500 D 1274814 CDS YP_007379883.1 443616027 14480685 710568..711155 1 NC_020163.1 COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA 711155 14480685 APECO78_03500 Escherichia coli APEC O78 molybdenum cofactor biosynthesis protein MogA YP_007379883.1 710568 D 1274814 CDS YP_007379884.1 443616028 14480686 complement(711190..711756) 1 NC_020163.1 COG1584 Predicted membrane protein; hypothetical protein 711756 14480686 APECO78_03505 Escherichia coli APEC O78 hypothetical protein YP_007379884.1 711190 R 1274814 CDS YP_007379885.1 443616029 14480687 complement(711905..712618) 1 NC_020163.1 COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein 712618 14480687 APECO78_03510 Escherichia coli APEC O78 hypothetical protein YP_007379885.1 711905 R 1274814 CDS YP_007379886.1 443616030 14480688 complement(712644..713048) 1 NC_020163.1 hypothetical protein 713048 14480688 APECO78_03515 Escherichia coli APEC O78 hypothetical protein YP_007379886.1 712644 R 1274814 CDS YP_007379887.1 443616031 14480689 713425..715341 1 NC_020163.1 COG0443 Molecular chaperone; molecular chaperone DnaK 715341 14480689 APECO78_03520 Escherichia coli APEC O78 molecular chaperone DnaK YP_007379887.1 713425 D 1274814 CDS YP_007379888.1 443616032 14480690 715430..716560 1 NC_020163.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ 716560 14480690 APECO78_03525 Escherichia coli APEC O78 chaperone protein DnaJ YP_007379888.1 715430 D 1274814 CDS YP_007379889.1 443616033 14480691 complement(716664..716873) 1 NC_020163.1 overlaps CDS of hokC; regulatory protein for HokC 716873 14480691 APECO78_03530 Escherichia coli APEC O78 regulatory protein for HokC YP_007379889.1 716664 R 1274814 CDS YP_007379890.1 443616034 14480692 717238..717360 1 NC_020163.1 hypothetical protein 717360 14480692 APECO78_03535 Escherichia coli APEC O78 hypothetical protein YP_007379890.1 717238 D 1274814 CDS YP_007379891.1 443616035 14480693 717402..718568 1 NC_020163.1 COG3004 Na+/H+ antiporter; pH-dependent sodium/proton antiporter 718568 14480693 APECO78_03540 Escherichia coli APEC O78 pH-dependent sodium/proton antiporter YP_007379891.1 717402 D 1274814 CDS YP_007379892.1 443616036 14480694 718628..719533 1 NC_020163.1 COG0583 Transcriptional regulator; transcriptional activator NhaR 719533 14480694 APECO78_03545 Escherichia coli APEC O78 transcriptional activator NhaR YP_007379892.1 718628 D 1274814 CDS YP_007379893.1 443616037 14480695 complement(719572..719997) 1 NC_020163.1 hypothetical protein 719997 14480695 APECO78_03550 Escherichia coli APEC O78 hypothetical protein YP_007379893.1 719572 R 1274814 CDS YP_007379894.1 443616038 14480696 complement(720312..720530) 1 NC_020163.1 hypothetical protein 720530 14480696 APECO78_03555 Escherichia coli APEC O78 hypothetical protein YP_007379894.1 720312 R 1274814 CDS YP_007379895.1 443616039 14480697 complement(722121..722408) 1 NC_020163.1 T3SS effector EspX 722408 14480697 APECO78_03570 Escherichia coli APEC O78 T3SS effector EspX YP_007379895.1 722121 R 1274814 CDS YP_007379896.1 443616040 14480698 complement(724025..724288) 1 NC_020163.1 COG0268 Ribosomal protein S20; 30S ribosomal protein S20 724288 14480698 APECO78_03575 Escherichia coli APEC O78 30S ribosomal protein S20 YP_007379896.1 724025 R 1274814 CDS YP_007379897.1 443616041 14480699 724391..724609 1 NC_020163.1 hypothetical protein 724609 14480699 APECO78_03580 Escherichia coli APEC O78 hypothetical protein YP_007379897.1 724391 D 1274814 CDS YP_007379898.1 443616042 14480700 724617..725558 1 NC_020163.1 COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase 725558 14480700 APECO78_03585 Escherichia coli APEC O78 bifunctional riboflavin kinase/FMN adenylyltransferase YP_007379898.1 724617 D 1274814 CDS YP_007379899.1 443616043 14480701 725601..728417 1 NC_020163.1 COG0060 Isoleucyl-tRNA synthetase; isoleucyl-tRNA ligase 728417 ileS 14480701 ileS Escherichia coli APEC O78 isoleucyl-tRNA ligase YP_007379899.1 725601 D 1274814 CDS YP_007379900.1 443616044 14480702 728417..728911 1 NC_020163.1 COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase 728911 lspA 14480702 lspA Escherichia coli APEC O78 lipoprotein signal peptidase YP_007379900.1 728417 D 1274814 CDS YP_007379901.1 443616045 14480703 729036..729485 1 NC_020163.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase 729485 14480703 APECO78_03600 Escherichia coli APEC O78 FKBP-type peptidyl-prolyl cis-trans isomerase YP_007379901.1 729036 D 1274814 CDS YP_007379902.1 443616046 14480704 729487..730437 1 NC_020163.1 COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 730437 ispH 14480704 ispH Escherichia coli APEC O78 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_007379902.1 729487 D 1274814 CDS YP_007379903.1 443616047 14480705 730503..731417 1 NC_020163.1 COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase RihC 731417 14480705 APECO78_03610 Escherichia coli APEC O78 ribonucleoside hydrolase RihC YP_007379903.1 730503 D 1274814 CDS YP_007379904.1 443616048 14480706 731584..732405 1 NC_020163.1 COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 732405 14480706 APECO78_03615 Escherichia coli APEC O78 dihydrodipicolinate reductase YP_007379904.1 731584 D 1274814 CDS YP_007379905.1 443616049 14480707 732861..734009 1 NC_020163.1 COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 734009 14480707 APECO78_03620 Escherichia coli APEC O78 carbamoyl phosphate synthase small subunit YP_007379905.1 732861 D 1274814 CDS YP_007379906.1 443616050 14480708 734027..737248 1 NC_020163.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit 737248 14480708 APECO78_03625 Escherichia coli APEC O78 carbamoyl phosphate synthase large subunit YP_007379906.1 734027 D 1274814 CDS YP_007379907.1 443616051 14480709 737509..737904 1 NC_020163.1 DNA-binding transcriptional activator CaiF 737904 14480709 APECO78_03630 Escherichia coli APEC O78 DNA-binding transcriptional activator CaiF YP_007379907.1 737509 D 1274814 CDS YP_007379908.1 443616052 14480710 complement(737990..738580) 1 NC_020163.1 COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; carnitine operon protein CaiE 738580 14480710 APECO78_03635 Escherichia coli APEC O78 carnitine operon protein CaiE YP_007379908.1 737990 R 1274814 CDS YP_007379909.1 443616053 14480711 complement(738586..739371) 1 NC_020163.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; carnitinyl-CoA dehydratase 739371 14480711 APECO78_03640 Escherichia coli APEC O78 carnitinyl-CoA dehydratase YP_007379909.1 738586 R 1274814 CDS YP_007379910.1 443616054 14480712 complement(739480..741033) 1 NC_020163.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; crotonobetaine/carnitine-CoA ligase 741033 caiC 14480712 caiC Escherichia coli APEC O78 crotonobetaine/carnitine-CoA ligase YP_007379910.1 739480 R 1274814 CDS YP_007379911.1 443616055 14480713 complement(741107..742324) 1 NC_020163.1 COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; crotonobetainyl-CoA:carnitine CoA-transferase 742324 14480713 APECO78_03650 Escherichia coli APEC O78 crotonobetainyl-CoA:carnitine CoA-transferase YP_007379911.1 741107 R 1274814 CDS YP_007379912.1 443616056 14480714 complement(742453..743595) 1 NC_020163.1 COG1960 Acyl-CoA dehydrogenases; crotonobetainyl-CoA dehydrogenase 743595 14480714 APECO78_03655 Escherichia coli APEC O78 crotonobetainyl-CoA dehydrogenase YP_007379912.1 742453 R 1274814 CDS YP_007379913.1 443616057 14480715 complement(743626..745140) 1 NC_020163.1 COG1292 Choline-glycine betaine transporter; L-carnitine/gamma-butyrobetaine antiporter 745140 14480715 APECO78_03660 Escherichia coli APEC O78 L-carnitine/gamma-butyrobetaine antiporter YP_007379913.1 743626 R 1274814 CDS YP_007379914.1 443616058 14480716 745614..746384 1 NC_020163.1 COG2086 Electron transfer flavoprotein, beta subunit; hypothetical protein 746384 14480716 APECO78_03665 Escherichia coli APEC O78 hypothetical protein YP_007379914.1 745614 D 1274814 CDS YP_007379915.1 443616059 14480717 746399..747340 1 NC_020163.1 COG2025 Electron transfer flavoprotein, alpha subunit; putative electron transfer flavoprotein FixB 747340 14480717 APECO78_03670 Escherichia coli APEC O78 putative electron transfer flavoprotein FixB YP_007379915.1 746399 D 1274814 CDS YP_007379916.1 443616060 14480718 747391..748677 1 NC_020163.1 COG0644 Dehydrogenases (flavoproteins); flavoprotein FixC 748677 14480718 APECO78_03675 Escherichia coli APEC O78 flavoprotein FixC YP_007379916.1 747391 D 1274814 CDS YP_007379917.1 443616061 14480719 748674..748961 1 NC_020163.1 COG2440 Ferredoxin-like protein; ferredoxin-like protein FixX 748961 14480719 APECO78_03680 Escherichia coli APEC O78 ferredoxin-like protein FixX YP_007379917.1 748674 D 1274814 CDS YP_007379918.1 443616062 14480720 749019..750350 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative transport protein 750350 14480720 APECO78_03685 Escherichia coli APEC O78 putative transport protein YP_007379918.1 749019 D 1274814 CDS YP_007379919.1 443616063 14480721 750458..750988 1 NC_020163.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefF 750988 14480721 APECO78_03690 Escherichia coli APEC O78 glutathione-regulated potassium-efflux system ancillary protein KefF YP_007379919.1 750458 D 1274814 CDS YP_007379920.1 443616064 14480722 750981..752843 1 NC_020163.1 COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein 752843 14480722 APECO78_03695 Escherichia coli APEC O78 glutathione-regulated potassium-efflux system protein YP_007379920.1 750981 D 1274814 CDS YP_007379921.1 443616065 14480723 753035..753514 1 NC_020163.1 COG0262 Dihydrofolate reductase; dihydrofolate reductase 753514 14480723 APECO78_03700 Escherichia coli APEC O78 dihydrofolate reductase YP_007379921.1 753035 D 1274814 CDS YP_007379922.1 443616066 14480724 complement(753592..754434) 1 NC_020163.1 COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; diadenosine tetraphosphatase 754434 14480724 APECO78_03705 Escherichia coli APEC O78 diadenosine tetraphosphatase YP_007379922.1 753592 R 1274814 CDS YP_007379923.1 443616067 14480725 complement(754441..754818) 1 NC_020163.1 COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; CO2+/MG2+ efflux protein ApaG 754818 14480725 APECO78_03710 Escherichia coli APEC O78 CO2+/MG2+ efflux protein ApaG YP_007379923.1 754441 R 1274814 CDS YP_007379924.1 443616068 14480726 complement(754821..755642) 1 NC_020163.1 COG0030 Dimethyladenosine transferase (rRNA methylation); dimethyladenosine transferase 755642 14480726 APECO78_03715 Escherichia coli APEC O78 dimethyladenosine transferase YP_007379924.1 754821 R 1274814 CDS YP_007379925.1 443616069 14480727 complement(755639..756628) 1 NC_020163.1 COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 756628 pdxA 14480727 pdxA Escherichia coli APEC O78 4-hydroxythreonine-4-phosphate dehydrogenase YP_007379925.1 755639 R 1274814 CDS YP_007379926.1 443616070 14480728 complement(756628..757914) 1 NC_020163.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase SurA 757914 14480728 APECO78_03725 Escherichia coli APEC O78 peptidyl-prolyl cis-trans isomerase SurA YP_007379926.1 756628 R 1274814 CDS YP_007379927.1 443616071 14480729 complement(757967..760321) 1 NC_020163.1 COG1452 Organic solvent tolerance protein OstA; LPS assembly outer membrane complex protein LptD 760321 14480729 APECO78_03730 Escherichia coli APEC O78 LPS assembly outer membrane complex protein LptD YP_007379927.1 757967 R 1274814 CDS YP_007379928.1 443616072 14480730 760576..761391 1 NC_020163.1 COG1076 DnaJ-domain-containing proteins 1; Dna-J like membrane chaperone protein 761391 djlA 14480730 djlA Escherichia coli APEC O78 Dna-J like membrane chaperone protein YP_007379928.1 760576 D 1274814 CDS YP_007379929.1 443616073 14480731 complement(761508..762167) 1 NC_020163.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; Ribosomal large subunit pseudouridine synthase A 762167 14480731 APECO78_03740 Escherichia coli APEC O78 Ribosomal large subunit pseudouridine synthase A YP_007379929.1 761508 R 1274814 CDS YP_007379930.1 443616074 14480732 complement(762179..765085) 1 NC_020163.1 COG0553 Superfamily II DNA/RNA helicases, SNF2 family; ATP-dependent helicase HepA 765085 14480732 APECO78_03745 Escherichia coli APEC O78 ATP-dependent helicase HepA YP_007379930.1 762179 R 1274814 CDS YP_007379931.1 443616075 14480733 complement(765250..767601) 1 NC_020163.1 COG0417 DNA polymerase elongation subunit (family B); DNA polymerase II 767601 14480733 APECO78_03750 Escherichia coli APEC O78 DNA polymerase II YP_007379931.1 765250 R 1274814 CDS YP_007379932.1 443616076 14480734 complement(767676..768371) 1 NC_020163.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 768371 araD 14480734 araD Escherichia coli APEC O78 L-ribulose-5-phosphate 4-epimerase YP_007379932.1 767676 R 1274814 CDS YP_007379933.1 443616077 14480735 complement(768571..770073) 1 NC_020163.1 COG2160 L-arabinose isomerase; L-arabinose isomerase 770073 14480735 APECO78_03760 Escherichia coli APEC O78 L-arabinose isomerase YP_007379933.1 768571 R 1274814 CDS YP_007379934.1 443616078 14480736 complement(770084..771784) 1 NC_020163.1 COG1069 Ribulose kinase; ribulokinase 771784 14480736 APECO78_03765 Escherichia coli APEC O78 ribulokinase YP_007379934.1 770084 R 1274814 CDS YP_007379935.1 443616079 14480737 772123..773001 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; arabinose operon regulatory protein 773001 14480737 APECO78_03770 Escherichia coli APEC O78 arabinose operon regulatory protein YP_007379935.1 772123 D 1274814 CDS YP_007379936.1 443616080 14480738 773087..773851 1 NC_020163.1 COG0586 Uncharacterized membrane-associated protein; inner membrane protein 773851 14480738 APECO78_03775 Escherichia coli APEC O78 inner membrane protein YP_007379936.1 773087 D 1274814 CDS YP_007379937.1 443616081 14480739 complement(773965..774663) 1 NC_020163.1 COG3840 ABC-type thiamine transport system, ATPase component; thiamine transporter ATP-binding subunit 774663 thiQ 14480739 thiQ Escherichia coli APEC O78 thiamine transporter ATP-binding subunit YP_007379937.1 773965 R 1274814 CDS YP_007379938.1 443616082 14480740 complement(774647..776257) 1 NC_020163.1 COG0555 ABC-type sulfate transport system, permease component; thiamine transporter membrane protein 776257 thiP 14480740 thiP Escherichia coli APEC O78 thiamine transporter membrane protein YP_007379938.1 774647 R 1274814 CDS YP_007379939.1 443616083 14480741 complement(776233..777216) 1 NC_020163.1 COG4143 ABC-type thiamine transport system, periplasmic component; thiamine transporter substrate binding subunit 777216 tbpA 14480741 tbpA Escherichia coli APEC O78 thiamine transporter substrate binding subunit YP_007379939.1 776233 R 1274814 CDS YP_007379940.1 443616084 14480742 complement(777380..779035) 1 NC_020163.1 COG4533 ABC-type uncharacterized transport system, periplasmic component; transcriptional regulator SgrR 779035 14480742 APECO78_03795 Escherichia coli APEC O78 transcriptional regulator SgrR YP_007379940.1 777380 R 1274814 CDS YP_007379941.1 443616085 14480743 779124..779255 1 NC_020163.1 hypothetical protein 779255 14480743 APECO78_03800 Escherichia coli APEC O78 hypothetical protein YP_007379941.1 779124 D 1274814 CDS YP_007379942.1 443616086 14480744 779357..780535 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; broad specificity sugar efflux system SetA 780535 14480744 APECO78_03805 Escherichia coli APEC O78 broad specificity sugar efflux system SetA YP_007379942.1 779357 D 1274814 CDS YP_007379943.1 443616087 14480745 complement(780584..781189) 1 NC_020163.1 COG0066 3-isopropylmalate dehydratase small subunit; isopropylmalate isomerase small subunit 781189 14480745 APECO78_03810 Escherichia coli APEC O78 isopropylmalate isomerase small subunit YP_007379943.1 780584 R 1274814 CDS YP_007379944.1 443616088 14480746 complement(781200..782600) 1 NC_020163.1 COG0065 3-isopropylmalate dehydratase large subunit; 3-isopropylmalate dehydratase large subunit 782600 14480746 APECO78_03815 Escherichia coli APEC O78 3-isopropylmalate dehydratase large subunit YP_007379944.1 781200 R 1274814 CDS YP_007379945.1 443616089 14480747 complement(782603..783694) 1 NC_020163.1 COG0473 Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 783694 14480747 APECO78_03820 Escherichia coli APEC O78 3-isopropylmalate dehydrogenase YP_007379945.1 782603 R 1274814 CDS YP_007379946.1 443616090 14480748 complement(783694..785265) 1 NC_020163.1 COG0119 Isopropylmalate/homocitrate/citramalate synthases; 2-isopropylmalate synthase 785265 14480748 APECO78_03825 Escherichia coli APEC O78 2-isopropylmalate synthase YP_007379946.1 783694 R 1274814 CDS YP_007379947.1 443616091 14480749 complement(785358..785444) 1 NC_020163.1 leu operon leader peptide 785444 14480749 APECO78_03830 Escherichia coli APEC O78 leu operon leader peptide YP_007379947.1 785358 R 1274814 CDS YP_007379948.1 443616092 14480750 786104..787048 1 NC_020163.1 COG0583 Transcriptional regulator; leucine transcriptional activator 787048 leuO 14480750 leuO Escherichia coli APEC O78 leucine transcriptional activator YP_007379948.1 786104 D 1274814 CDS YP_007379949.1 443616093 14480751 787366..789090 1 NC_020163.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 3 catalytic subunit 789090 14480751 APECO78_03840 Escherichia coli APEC O78 acetolactate synthase 3 catalytic subunit YP_007379949.1 787366 D 1274814 CDS YP_007379950.1 443616094 14480752 789093..789584 1 NC_020163.1 COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 3 regulatory subunit 789584 ilvH 14480752 ilvH Escherichia coli APEC O78 acetolactate synthase 3 regulatory subunit YP_007379950.1 789093 D 1274814 CDS YP_007379951.1 443616095 14480753 789764..790768 1 NC_020163.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator FruR 790768 14480753 APECO78_03850 Escherichia coli APEC O78 DNA-binding transcriptional regulator FruR YP_007379951.1 789764 D 1274814 CDS YP_007379952.1 443616096 14480754 791370..791828 1 NC_020163.1 COG2001 Uncharacterized protein conserved in bacteria; cell division protein MraZ 791828 14480754 APECO78_03855 Escherichia coli APEC O78 cell division protein MraZ YP_007379952.1 791370 D 1274814 CDS YP_007379953.1 443616097 14480755 791830..792771 1 NC_020163.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 792771 14480755 APECO78_03860 Escherichia coli APEC O78 S-adenosyl-methyltransferase MraW YP_007379953.1 791830 D 1274814 CDS YP_007379954.1 443616098 14480756 792768..793133 1 NC_020163.1 COG3116 Cell division protein; cell division protein FtsL 793133 14480756 APECO78_03865 Escherichia coli APEC O78 cell division protein FtsL YP_007379954.1 792768 D 1274814 CDS YP_007379955.1 443616099 14480757 793149..794915 1 NC_020163.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; peptidoglycan synthase FtsI 794915 14480757 APECO78_03870 Escherichia coli APEC O78 peptidoglycan synthase FtsI YP_007379955.1 793149 D 1274814 CDS YP_007379956.1 443616100 14480758 794902..796389 1 NC_020163.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 796389 murE 14480758 murE Escherichia coli APEC O78 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_007379956.1 794902 D 1274814 CDS YP_007379957.1 443616101 14480759 796386..797744 1 NC_020163.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 797744 14480759 APECO78_03880 Escherichia coli APEC O78 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_007379957.1 796386 D 1274814 CDS YP_007379958.1 443616102 14480760 797738..798820 1 NC_020163.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 798820 14480760 APECO78_03885 Escherichia coli APEC O78 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_007379958.1 797738 D 1274814 CDS YP_007379959.1 443616103 14480761 798823..800139 1 NC_020163.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 800139 14480761 APECO78_03890 Escherichia coli APEC O78 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_007379959.1 798823 D 1274814 CDS YP_007379960.1 443616104 14480762 800139..801383 1 NC_020163.1 COG0772 Bacterial cell division membrane protein; cell division protein FtsW 801383 14480762 APECO78_03895 Escherichia coli APEC O78 cell division protein FtsW YP_007379960.1 800139 D 1274814 CDS YP_007379961.1 443616105 14480763 801380..802447 1 NC_020163.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 802447 murG 14480763 murG Escherichia coli APEC O78 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_007379961.1 801380 D 1274814 CDS YP_007379962.1 443616106 14480764 802501..803976 1 NC_020163.1 COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 803976 murC 14480764 murC Escherichia coli APEC O78 UDP-N-acetylmuramate--L-alanine ligase YP_007379962.1 802501 D 1274814 CDS YP_007379963.1 443616107 14480765 803969..804889 1 NC_020163.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanine--D-alanine ligase 804889 ddl 14480765 ddl Escherichia coli APEC O78 D-alanine--D-alanine ligase YP_007379963.1 803969 D 1274814 CDS YP_007379964.1 443616108 14480766 804891..805721 1 NC_020163.1 COG1589 Cell division septal protein; cell division protein FtsQ 805721 14480766 APECO78_03915 Escherichia coli APEC O78 cell division protein FtsQ YP_007379964.1 804891 D 1274814 CDS YP_007379965.1 443616109 14480767 805718..806980 1 NC_020163.1 COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 806980 14480767 APECO78_03920 Escherichia coli APEC O78 cell division protein FtsA YP_007379965.1 805718 D 1274814 CDS YP_007379966.1 443616110 14480768 807041..808192 1 NC_020163.1 COG0206 Cell division GTPase; cell division protein FtsZ 808192 14480768 APECO78_03925 Escherichia coli APEC O78 cell division protein FtsZ YP_007379966.1 807041 D 1274814 CDS YP_007379967.1 443616111 14480769 808293..809210 1 NC_020163.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 809210 14480769 APECO78_03930 Escherichia coli APEC O78 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_007379967.1 808293 D 1274814 CDS YP_007379968.1 443616112 14480770 809441..809953 1 NC_020163.1 SecA regulator SecM 809953 14480770 APECO78_03935 Escherichia coli APEC O78 SecA regulator SecM YP_007379968.1 809441 D 1274814 CDS YP_007379969.1 443616113 14480771 810015..812720 1 NC_020163.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 812720 14480771 APECO78_03940 Escherichia coli APEC O78 preprotein translocase subunit SecA YP_007379969.1 810015 D 1274814 CDS YP_007379970.1 443616114 14480772 812780..813169 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Mutator mutT protein 813169 14480772 APECO78_03945 Escherichia coli APEC O78 Mutator mutT protein YP_007379970.1 812780 D 1274814 CDS YP_007379971.1 443616115 14480773 complement(813385..813582) 1 NC_020163.1 COG3024 Uncharacterized protein conserved in bacteria; DNA gyrase inhibitor 813582 14480773 APECO78_03950 Escherichia coli APEC O78 DNA gyrase inhibitor YP_007379971.1 813385 R 1274814 CDS YP_007379972.1 443616116 14480774 complement(813592..814335) 1 NC_020163.1 COG4582 Uncharacterized protein conserved in bacteria; hypothetical protein 814335 14480774 APECO78_03955 Escherichia coli APEC O78 hypothetical protein YP_007379972.1 813592 R 1274814 CDS YP_007379973.1 443616117 14480775 complement(814335..814955) 1 NC_020163.1 COG0237 Dephospho-CoA kinase; dephospho-CoA kinase 814955 14480775 APECO78_03960 Escherichia coli APEC O78 dephospho-CoA kinase YP_007379973.1 814335 R 1274814 CDS YP_007379974.1 443616118 14480776 815180..816223 1 NC_020163.1 COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 816223 14480776 APECO78_03965 Escherichia coli APEC O78 guanosine 5'-monophosphate oxidoreductase YP_007379974.1 815180 D 1274814 CDS YP_007379975.1 443616119 14480777 complement(816258..817460) 1 NC_020163.1 COG1459 Type II secretory pathway, component PulF; type IV pilin biogenesis protein 817460 14480777 APECO78_03970 Escherichia coli APEC O78 type IV pilin biogenesis protein YP_007379975.1 816258 R 1274814 CDS YP_007379976.1 443616120 14480778 complement(817450..818835) 1 NC_020163.1 COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; hypothetical protein 818835 14480778 APECO78_03975 Escherichia coli APEC O78 hypothetical protein YP_007379976.1 817450 R 1274814 CDS YP_007379977.1 443616121 14480779 complement(818845..819285) 1 NC_020163.1 COG4969 Tfp pilus assembly protein, major pilin PilA; major pilin subunit 819285 14480779 APECO78_03980 Escherichia coli APEC O78 major pilin subunit YP_007379977.1 818845 R 1274814 CDS YP_007379978.1 443616122 14480780 complement(819488..820381) 1 NC_020163.1 COG0157 Nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase 820381 14480780 APECO78_03985 Escherichia coli APEC O78 quinolinate phosphoribosyltransferase YP_007379978.1 819488 R 1274814 CDS YP_007379979.1 443616123 14480781 820469..821020 1 NC_020163.1 COG3023 Negative regulator of beta-lactamase expression; N-acetyl-anhydromuranmyl-L-alanine amidase 821020 14480781 APECO78_03990 Escherichia coli APEC O78 N-acetyl-anhydromuranmyl-L-alanine amidase YP_007379979.1 820469 D 1274814 CDS YP_007379980.1 443616124 14480782 821017..821871 1 NC_020163.1 COG1270 Cobalamin biosynthesis protein CobD/CbiB; ampE 821871 14480782 APECO78_03995 Escherichia coli APEC O78 ampE YP_007379980.1 821017 D 1274814 CDS YP_007379981.1 443616125 14480783 complement(821914..823284) 1 NC_020163.1 COG1113 Gamma-aminobutyrate permease and related permeases; aromatic amino acid transporter 823284 14480783 APECO78_04000 Escherichia coli APEC O78 aromatic amino acid transporter YP_007379981.1 821914 R 1274814 CDS YP_007379982.1 443616126 14480784 823828..824592 1 NC_020163.1 COG2186 Transcriptional regulators; transcriptional regulator PdhR 824592 14480784 APECO78_04005 Escherichia coli APEC O78 transcriptional regulator PdhR YP_007379982.1 823828 D 1274814 CDS YP_007379983.1 443616127 14480785 824753..827416 1 NC_020163.1 COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component; pyruvate dehydrogenase subunit E1 827416 aceE 14480785 aceE Escherichia coli APEC O78 pyruvate dehydrogenase subunit E1 YP_007379983.1 824753 D 1274814 CDS YP_007379984.1 443616128 14480786 827431..829323 1 NC_020163.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide acetyltransferase 829323 14480786 APECO78_04015 Escherichia coli APEC O78 dihydrolipoamide acetyltransferase YP_007379984.1 827431 D 1274814 CDS YP_007379985.1 443616129 14480787 829531..830955 1 NC_020163.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; dihydrolipoamide dehydrogenase 830955 14480787 APECO78_04020 Escherichia coli APEC O78 dihydrolipoamide dehydrogenase YP_007379985.1 829531 D 1274814 CDS YP_007379986.1 443616130 14480788 complement(831026..832840) 1 NC_020163.1 hypothetical protein 832840 14480788 APECO78_04025 Escherichia coli APEC O78 hypothetical protein YP_007379986.1 831026 R 1274814 CDS YP_007379987.1 443616131 14480789 833195..835792 1 NC_020163.1 COG1049 Aconitase B; aconitate hydratase AcnB 835792 14480789 APECO78_04030 Escherichia coli APEC O78 aconitate hydratase AcnB YP_007379987.1 833195 D 1274814 CDS YP_007379988.1 443616132 14480790 835967..836329 1 NC_020163.1 COG3112 Uncharacterized protein conserved in bacteria; hypothetical protein 836329 14480790 APECO78_04035 Escherichia coli APEC O78 hypothetical protein YP_007379988.1 835967 D 1274814 CDS YP_007379989.1 443616133 14480791 complement(836367..837161) 1 NC_020163.1 COG1586 S-adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase 837161 14480791 APECO78_04040 Escherichia coli APEC O78 S-adenosylmethionine decarboxylase YP_007379989.1 836367 R 1274814 CDS YP_007379990.1 443616134 14480792 complement(837177..838043) 1 NC_020163.1 COG0421 Spermidine synthase; spermidine synthase 838043 14480792 APECO78_04045 Escherichia coli APEC O78 spermidine synthase YP_007379990.1 837177 R 1274814 CDS YP_007379991.1 443616135 14480793 complement(838149..838496) 1 NC_020163.1 hypothetical protein 838496 14480793 APECO78_04050 Escherichia coli APEC O78 hypothetical protein YP_007379991.1 838149 R 1274814 CDS YP_007379992.1 443616136 14480794 838662..840212 1 NC_020163.1 COG2132 Putative multicopper oxidases; multicopper oxidase 840212 14480794 APECO78_04055 Escherichia coli APEC O78 multicopper oxidase YP_007379992.1 838662 D 1274814 CDS YP_007379993.1 443616137 14480795 complement(840414..842804) 1 NC_020163.1 COG4993 Glucose dehydrogenase; glucose dehydrogenase 842804 14480795 APECO78_04060 Escherichia coli APEC O78 glucose dehydrogenase YP_007379993.1 840414 R 1274814 CDS YP_007379994.1 443616138 14480796 843010..843546 1 NC_020163.1 COG0634 Hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 843546 14480796 APECO78_04065 Escherichia coli APEC O78 hypoxanthine phosphoribosyltransferase YP_007379994.1 843010 D 1274814 CDS YP_007379995.1 443616139 14480797 complement(843587..844249) 1 NC_020163.1 COG0288 Carbonic anhydrase; carbonic anhydrase 844249 14480797 APECO78_04070 Escherichia coli APEC O78 carbonic anhydrase YP_007379995.1 843587 R 1274814 CDS YP_007379996.1 443616140 14480798 844358..845284 1 NC_020163.1 COG1131 ABC-type multidrug transport system, ATPase component; transporter subunit 845284 14480798 APECO78_04075 Escherichia coli APEC O78 transporter subunit YP_007379996.1 844358 D 1274814 CDS YP_007379997.1 443616141 14480799 845281..846051 1 NC_020163.1 COG0842 ABC-type multidrug transport system, permease component; inner membrane transport permease 846051 14480799 APECO78_04080 Escherichia coli APEC O78 inner membrane transport permease YP_007379997.1 845281 D 1274814 CDS YP_007379998.1 443616142 14480800 846156..846596 1 NC_020163.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; putative PTS Enzyme IIA 846596 14480800 APECO78_04085 Escherichia coli APEC O78 putative PTS Enzyme IIA YP_007379998.1 846156 D 1274814 CDS YP_007379999.1 443616143 14480801 846660..847889 1 NC_020163.1 COG0726 Predicted xylanase/chitin deacetylase; polysaccharide deacetylase 847889 14480801 APECO78_04090 Escherichia coli APEC O78 polysaccharide deacetylase YP_007379999.1 846660 D 1274814 CDS YP_007380000.1 443616144 14480802 complement(847893..848273) 1 NC_020163.1 COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase 848273 14480802 APECO78_04095 Escherichia coli APEC O78 aspartate alpha-decarboxylase YP_007380000.1 847893 R 1274814 CDS YP_007380001.1 443616145 14480803 848547..849449 1 NC_020163.1 putative transposase 849449 14480803 APECO78_04100 Escherichia coli APEC O78 putative transposase YP_007380001.1 848547 D 1274814 CDS YP_007380002.1 443616146 14480804 complement(849523..850374) 1 NC_020163.1 COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase 850374 panC 14480804 panC Escherichia coli APEC O78 pantoate--beta-alanine ligase YP_007380002.1 849523 R 1274814 CDS YP_007380003.1 443616147 14480805 complement(850386..851180) 1 NC_020163.1 COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 851180 panB 14480805 panB Escherichia coli APEC O78 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_007380003.1 850386 R 1274814 CDS YP_007380004.1 443616148 14480806 complement(851293..852567) 1 NC_020163.1 fimbrial-like adhesin protein 852567 14480806 APECO78_04115 Escherichia coli APEC O78 fimbrial-like adhesin protein YP_007380004.1 851293 R 1274814 CDS YP_007380005.1 443616149 14480807 complement(852620..853216) 1 NC_020163.1 fimbrial protein StaF 853216 14480807 APECO78_04120 Escherichia coli APEC O78 fimbrial protein StaF YP_007380005.1 852620 R 1274814 CDS YP_007380006.1 443616150 14480808 complement(853243..853845) 1 NC_020163.1 fimbrial protein StaE 853845 14480808 APECO78_04125 Escherichia coli APEC O78 fimbrial protein StaE YP_007380006.1 853243 R 1274814 CDS YP_007380007.1 443616151 14480809 complement(853860..854429) 1 NC_020163.1 fimbrial protein 854429 14480809 APECO78_04130 Escherichia coli APEC O78 fimbrial protein YP_007380007.1 853860 R 1274814 CDS YP_007380008.1 443616152 14480810 complement(854446..857046) 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein 857046 14480810 APECO78_04135 Escherichia coli APEC O78 fimbrial outer membrane usher protein YP_007380008.1 854446 R 1274814 CDS YP_007380009.1 443616153 14480811 complement(857081..857821) 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; chaperone protein EcpD 857821 14480811 APECO78_04140 Escherichia coli APEC O78 chaperone protein EcpD YP_007380009.1 857081 R 1274814 CDS YP_007380010.1 443616154 14480812 complement(857926..858510) 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein 858510 14480812 APECO78_04145 Escherichia coli APEC O78 fimbrial-like protein YP_007380010.1 857926 R 1274814 CDS YP_007380011.1 443616155 14480813 complement(858880..859359) 1 NC_020163.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 859359 14480813 APECO78_04150 Escherichia coli APEC O78 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_007380011.1 858880 R 1274814 CDS YP_007380012.1 443616156 14480814 complement(859356..860774) 1 NC_020163.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; poly(A) polymerase I 860774 pcnB 14480814 pcnB Escherichia coli APEC O78 poly(A) polymerase I YP_007380012.1 859356 R 1274814 CDS YP_007380013.1 443616157 14480815 complement(860813..861739) 1 NC_020163.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-Q tRNA(Asp) ligase 861739 14480815 APECO78_04160 Escherichia coli APEC O78 glutamyl-Q tRNA(Asp) ligase YP_007380013.1 860813 R 1274814 CDS YP_007380014.1 443616158 14480816 complement(861776..862231) 1 NC_020163.1 COG1734 DnaK suppressor protein; DnaK transcriptional regulator DksA 862231 14480816 APECO78_04165 Escherichia coli APEC O78 DnaK transcriptional regulator DksA YP_007380014.1 861776 R 1274814 CDS YP_007380015.1 443616159 14480817 complement(862409..863113) 1 NC_020163.1 COG1489 DNA-binding protein, stimulates sugar fermentation; DNA-binding transcriptional regulator 863113 14480817 APECO78_04170 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007380015.1 862409 R 1274814 CDS YP_007380016.1 443616160 14480818 complement(863128..863658) 1 NC_020163.1 COG1514 2'-5' RNA ligase; 2'-5' RNA ligase 863658 14480818 APECO78_04175 Escherichia coli APEC O78 2'-5' RNA ligase YP_007380016.1 863128 R 1274814 CDS YP_007380017.1 443616161 14480819 863732..866161 1 NC_020163.1 COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpB 866161 14480819 APECO78_04180 Escherichia coli APEC O78 ATP-dependent RNA helicase HrpB YP_007380017.1 863732 D 1274814 CDS YP_007380018.1 443616162 14480820 866357..868879 1 NC_020163.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein); penicillin-binding protein 1b 868879 14480820 APECO78_04185 Escherichia coli APEC O78 penicillin-binding protein 1b YP_007380018.1 866357 D 1274814 CDS YP_007380019.1 443616163 14480821 869099..871288 1 NC_020163.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; ferrichrome outer membrane transporter 871288 14480821 APECO78_04190 Escherichia coli APEC O78 ferrichrome outer membrane transporter YP_007380019.1 869099 D 1274814 CDS YP_007380020.1 443616164 14480822 871339..872136 1 NC_020163.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron-hydroxamate transporter ATP-binding subunit 872136 14480822 APECO78_04195 Escherichia coli APEC O78 iron-hydroxamate transporter ATP-binding subunit YP_007380020.1 871339 D 1274814 CDS YP_007380021.1 443616165 14480823 872136..873026 1 NC_020163.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron-hydroxamate transporter substrate-binding subunit 873026 14480823 APECO78_04200 Escherichia coli APEC O78 iron-hydroxamate transporter substrate-binding subunit YP_007380021.1 872136 D 1274814 CDS YP_007380022.1 443616166 14480824 873023..875005 1 NC_020163.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-hydroxamate transporter permease subunit 875005 14480824 APECO78_04205 Escherichia coli APEC O78 iron-hydroxamate transporter permease subunit YP_007380022.1 873023 D 1274814 CDS YP_007380023.1 443616167 14480825 complement(875040..876320) 1 NC_020163.1 COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase 876320 14480825 APECO78_04210 Escherichia coli APEC O78 glutamate-1-semialdehyde aminotransferase YP_007380023.1 875040 R 1274814 CDS YP_007380024.1 443616168 14480826 876545..877966 1 NC_020163.1 COG0038 Chloride channel protein EriC; chloride channel protein 877966 14480826 APECO78_04215 Escherichia coli APEC O78 chloride channel protein YP_007380024.1 876545 D 1274814 CDS YP_007380025.1 443616169 14480827 878048..878392 1 NC_020163.1 COG0316 Uncharacterized conserved protein; iron-sulfur cluster insertion protein ErpA 878392 14480827 APECO78_04220 Escherichia coli APEC O78 iron-sulfur cluster insertion protein ErpA YP_007380025.1 878048 D 1274814 CDS YP_007380026.1 443616170 14480828 complement(878439..879062) 1 NC_020163.1 COG2860 Predicted membrane protein; hypothetical protein 879062 14480828 APECO78_04225 Escherichia coli APEC O78 hypothetical protein YP_007380026.1 878439 R 1274814 CDS YP_007380027.1 443616171 14480829 complement(879100..879900) 1 NC_020163.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; vitamin B12-transporter protein BtuF 879900 14480829 APECO78_04230 Escherichia coli APEC O78 vitamin B12-transporter protein BtuF YP_007380027.1 879100 R 1274814 CDS YP_007380028.1 443616172 14480830 complement(879893..880591) 1 NC_020163.1 COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 880591 14480830 APECO78_04235 Escherichia coli APEC O78 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_007380028.1 879893 R 1274814 CDS YP_007380029.1 443616173 14480831 880675..882192 1 NC_020163.1 COG0232 dGTP triphosphohydrolase; deoxyguanosinetriphosphate triphosphohydrolase 882192 dgt 14480831 dgt Escherichia coli APEC O78 deoxyguanosinetriphosphate triphosphohydrolase YP_007380029.1 880675 D 1274814 CDS YP_007380030.1 443616174 14480832 882322..883746 1 NC_020163.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 883746 14480832 APECO78_04245 Escherichia coli APEC O78 serine endoprotease YP_007380030.1 882322 D 1274814 CDS YP_007380031.1 443616175 14480833 883901..885058 1 NC_020163.1 COG3835 Sugar diacid utilization regulator; carbohydrate diacid transcriptional activator CdaR 885058 14480833 APECO78_04250 Escherichia coli APEC O78 carbohydrate diacid transcriptional activator CdaR YP_007380031.1 883901 D 1274814 CDS YP_007380032.1 443616176 14480834 complement(885147..885533) 1 NC_020163.1 hypothetical protein 885533 14480834 APECO78_04255 Escherichia coli APEC O78 hypothetical protein YP_007380032.1 885147 R 1274814 CDS YP_007380033.1 443616177 14480835 complement(885848..886672) 1 NC_020163.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 886672 14480835 APECO78_04260 Escherichia coli APEC O78 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_007380033.1 885848 R 1274814 CDS YP_007380034.1 443616178 14480836 complement(886703..889375) 1 NC_020163.1 COG2844 UTP:GlnB (protein PII) uridylyltransferase; PII uridylyl-transferase 889375 14480836 APECO78_04265 Escherichia coli APEC O78 PII uridylyl-transferase YP_007380034.1 886703 R 1274814 CDS YP_007380035.1 443616179 14480837 complement(889437..890231) 1 NC_020163.1 COG0024 Methionine aminopeptidase; methionine aminopeptidase 890231 14480837 APECO78_04270 Escherichia coli APEC O78 methionine aminopeptidase YP_007380035.1 889437 R 1274814 CDS YP_007380036.1 443616180 14480838 890599..891324 1 NC_020163.1 COG0052 Ribosomal protein S2; 30S ribosomal protein S2 891324 rpsB 14480838 rpsB Escherichia coli APEC O78 30S ribosomal protein S2 YP_007380036.1 890599 D 1274814 CDS YP_007380037.1 443616181 14480839 891582..892433 1 NC_020163.1 COG0264 Translation elongation factor Ts; elongation factor Ts 892433 14480839 APECO78_04280 Escherichia coli APEC O78 elongation factor Ts YP_007380037.1 891582 D 1274814 CDS YP_007380038.1 443616182 14480840 892580..893305 1 NC_020163.1 COG0528 Uridylate kinase; uridylate kinase 893305 14480840 APECO78_04285 Escherichia coli APEC O78 uridylate kinase YP_007380038.1 892580 D 1274814 CDS YP_007380039.1 443616183 14480841 893455..894012 1 NC_020163.1 COG0233 Ribosome recycling factor; ribosome recycling factor 894012 14480841 APECO78_04290 Escherichia coli APEC O78 ribosome recycling factor YP_007380039.1 893455 D 1274814 CDS YP_007380040.1 443616184 14480842 894104..895300 1 NC_020163.1 COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 895300 14480842 APECO78_04295 Escherichia coli APEC O78 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_007380040.1 894104 D 1274814 CDS YP_007380041.1 443616185 14480843 895489..896247 1 NC_020163.1 COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase 896247 14480843 APECO78_04300 Escherichia coli APEC O78 undecaprenyl pyrophosphate synthase YP_007380041.1 895489 D 1274814 CDS YP_007380042.1 443616186 14480844 896260..897117 1 NC_020163.1 COG0575 CDP-diglyceride synthetase; CDP-diglyceride synthase 897117 14480844 APECO78_04305 Escherichia coli APEC O78 CDP-diglyceride synthase YP_007380042.1 896260 D 1274814 CDS YP_007380043.1 443616187 14480845 897129..898481 1 NC_020163.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1; zinc metallopeptidase RseP 898481 14480845 APECO78_04310 Escherichia coli APEC O78 zinc metallopeptidase RseP YP_007380043.1 897129 D 1274814 CDS YP_007380044.1 443616188 14480846 898511..900943 1 NC_020163.1 COG4775 Outer membrane protein/protective antigen OMA87; outer membrane protein assembly factor YaeT 900943 14480846 APECO78_04315 Escherichia coli APEC O78 outer membrane protein assembly factor YaeT YP_007380044.1 898511 D 1274814 CDS YP_007380045.1 443616189 14480847 901065..901550 1 NC_020163.1 COG2825 Outer membrane protein; periplasmic chaperone 901550 14480847 APECO78_04320 Escherichia coli APEC O78 periplasmic chaperone YP_007380045.1 901065 D 1274814 CDS YP_007380046.1 443616190 14480848 901554..902579 1 NC_020163.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 902579 lpxD 14480848 lpxD Escherichia coli APEC O78 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_007380046.1 901554 D 1274814 CDS YP_007380047.1 443616191 14480849 902684..903139 1 NC_020163.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase 903139 14480849 APECO78_04330 Escherichia coli APEC O78 (3R)-hydroxymyristoyl-ACP dehydratase YP_007380047.1 902684 D 1274814 CDS YP_007380048.1 443616192 14480850 903143..903931 1 NC_020163.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase 903931 14480850 APECO78_04335 Escherichia coli APEC O78 UDP-N-acetylglucosamine acyltransferase YP_007380048.1 903143 D 1274814 CDS YP_007380049.1 443616193 14480851 903931..905079 1 NC_020163.1 COG0763 Lipid A disaccharide synthetase; lipid-A-disaccharide synthase 905079 lpxB 14480851 lpxB Escherichia coli APEC O78 lipid-A-disaccharide synthase YP_007380049.1 903931 D 1274814 CDS YP_007380050.1 443616194 14480852 905076..905672 1 NC_020163.1 COG0164 Ribonuclease HII; ribonuclease HII 905672 14480852 APECO78_04345 Escherichia coli APEC O78 ribonuclease HII YP_007380050.1 905076 D 1274814 CDS YP_007380051.1 443616195 14480853 905707..909189 1 NC_020163.1 COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha 909189 dnaE 14480853 dnaE Escherichia coli APEC O78 DNA polymerase III subunit alpha YP_007380051.1 905707 D 1274814 CDS YP_007380052.1 443616196 14480854 909202..910161 1 NC_020163.1 COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha 910161 14480854 APECO78_04355 Escherichia coli APEC O78 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_007380052.1 909202 D 1274814 CDS YP_007380053.1 443616197 14480855 910260..912401 1 NC_020163.1 COG1982 Arginine/lysine/ornithine decarboxylases; lysine decarboxylase LdcC 912401 14480855 APECO78_04360 Escherichia coli APEC O78 lysine decarboxylase LdcC YP_007380053.1 910260 D 1274814 CDS YP_007380054.1 443616198 14480856 912458..912847 1 NC_020163.1 COG0346 Lactoylglutathione lyase and related lyases; lyase 912847 14480856 APECO78_04365 Escherichia coli APEC O78 lyase YP_007380054.1 912458 D 1274814 CDS YP_007380055.1 443616199 14480857 912912..914210 1 NC_020163.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine ligase 914210 tilS 14480857 tilS Escherichia coli APEC O78 tRNA(Ile)-lysidine ligase YP_007380055.1 912912 D 1274814 CDS YP_007380056.1 443616200 14480858 complement(914259..914519) 1 NC_020163.1 COG4568 Transcriptional antiterminator; Rho-binding antiterminator 914519 14480858 APECO78_04375 Escherichia coli APEC O78 Rho-binding antiterminator YP_007380056.1 914259 R 1274814 CDS YP_007380057.1 443616201 14480859 complement(914506..914706) 1 NC_020163.1 hypothetical protein 914706 14480859 APECO78_04380 Escherichia coli APEC O78 hypothetical protein YP_007380057.1 914506 R 1274814 CDS YP_007380058.1 443616202 14480860 914872..915417 1 NC_020163.1 COG4681 Uncharacterized protein conserved in bacteria; hypothetical protein 915417 14480860 APECO78_04385 Escherichia coli APEC O78 hypothetical protein YP_007380058.1 914872 D 1274814 CDS YP_007380059.1 443616203 14480861 915414..915836 1 NC_020163.1 COG1186 Protein chain release factor B; hypothetical protein 915836 14480861 APECO78_04390 Escherichia coli APEC O78 hypothetical protein YP_007380059.1 915414 D 1274814 CDS YP_007380060.1 443616204 14480862 915850..916560 1 NC_020163.1 COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance; lipoprotein involved with copper homeostasis and adhesion 916560 14480862 APECO78_04395 Escherichia coli APEC O78 lipoprotein involved with copper homeostasis and adhesion YP_007380060.1 915850 D 1274814 CDS YP_007380061.1 443616205 14480863 916590..916721 1 NC_020163.1 LivJ protein 916721 14480863 APECO78_04400 Escherichia coli APEC O78 LivJ protein YP_007380061.1 916590 D 1274814 CDS YP_007380062.1 443616206 14480864 complement(916715..916951) 1 NC_020163.1 hypothetical protein 916951 14480864 APECO78_04405 Escherichia coli APEC O78 hypothetical protein YP_007380062.1 916715 R 1274814 CDS YP_007380063.1 443616207 14480865 complement(916957..917538) 1 NC_020163.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein 917538 14480865 APECO78_04410 Escherichia coli APEC O78 hypothetical protein YP_007380063.1 916957 R 1274814 CDS YP_007380064.1 443616208 14480866 complement(917591..919309) 1 NC_020163.1 COG0442 Prolyl-tRNA synthetase; prolyl-tRNA synthetase 919309 14480866 APECO78_04415 Escherichia coli APEC O78 prolyl-tRNA synthetase YP_007380064.1 917591 R 1274814 CDS YP_007380065.1 443616209 14480867 complement(919421..920128) 1 NC_020163.1 COG1720 Uncharacterized conserved protein; hypothetical protein 920128 14480867 APECO78_04420 Escherichia coli APEC O78 hypothetical protein YP_007380065.1 919421 R 1274814 CDS YP_007380066.1 443616210 14480868 complement(920125..920529) 1 NC_020163.1 outer membrane lipoprotein 920529 14480868 APECO78_04425 Escherichia coli APEC O78 outer membrane lipoprotein YP_007380066.1 920125 R 1274814 CDS YP_007380067.1 443616211 14480869 complement(920647..921462) 1 NC_020163.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; DL-methionine transporter substrate-binding subunit 921462 14480869 APECO78_04430 Escherichia coli APEC O78 DL-methionine transporter substrate-binding subunit YP_007380067.1 920647 R 1274814 CDS YP_007380068.1 443616212 14480870 complement(921502..922155) 1 NC_020163.1 COG2011 ABC-type metal ion transport system, permease component; DL-methionine transporter permease 922155 14480870 APECO78_04435 Escherichia coli APEC O78 DL-methionine transporter permease YP_007380068.1 921502 R 1274814 CDS YP_007380069.1 443616213 14480871 complement(922148..923179) 1 NC_020163.1 COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine transporter ATP-binding subunit 923179 14480871 APECO78_04440 Escherichia coli APEC O78 DL-methionine transporter ATP-binding subunit YP_007380069.1 922148 R 1274814 CDS YP_007380070.1 443616214 14480872 923367..923942 1 NC_020163.1 COG0241 Histidinol phosphatase and related phosphatases; D,D-heptose 1,7-bisphosphate phosphatase 923942 14480872 APECO78_04445 Escherichia coli APEC O78 D,D-heptose 1,7-bisphosphate phosphatase YP_007380070.1 923367 D 1274814 CDS YP_007380071.1 443616215 14484595 929705..930508 1 NC_020163.1 COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase B 930508 dkgB 14484595 dkgB Escherichia coli APEC O78 2,5-diketo-D-gluconate reductase B YP_007380071.1 929705 D 1274814 CDS YP_007380072.1 443616216 14480874 complement(930505..931419) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 931419 14480874 APECO78_04455 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007380072.1 930505 R 1274814 CDS YP_007380073.1 443616217 14480875 931660..932460 1 NC_020163.1 COG3021 Uncharacterized protein conserved in bacteria; hypothetical protein 932460 14480875 APECO78_04460 Escherichia coli APEC O78 hypothetical protein YP_007380073.1 931660 D 1274814 CDS YP_007380074.1 443616218 14480876 932538..933308 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; putative methyltransferase 933308 14480876 APECO78_04465 Escherichia coli APEC O78 putative methyltransferase YP_007380074.1 932538 D 1274814 CDS YP_007380075.1 443616219 14480877 complement(933356..934714) 1 NC_020163.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); membrane-bound lytic murein transglycosylase D 934714 14480877 APECO78_04470 Escherichia coli APEC O78 membrane-bound lytic murein transglycosylase D YP_007380075.1 933356 R 1274814 CDS YP_007380076.1 443616220 14480878 complement(934786..935541) 1 NC_020163.1 COG0491 Zn-dependent hydrolases, including glyoxylases; hydroxyacylglutathione hydrolase 935541 14480878 APECO78_04475 Escherichia coli APEC O78 hydroxyacylglutathione hydrolase YP_007380076.1 934786 R 1274814 CDS YP_007380077.1 443616221 14480879 935575..936297 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 936297 14480879 APECO78_04480 Escherichia coli APEC O78 hypothetical protein YP_007380077.1 935575 D 1274814 CDS YP_007380078.1 443616222 14480880 complement(936294..936761) 1 NC_020163.1 COG0328 Ribonuclease HI; RNase HI 936761 14480880 APECO78_04485 Escherichia coli APEC O78 RNase HI YP_007380078.1 936294 R 1274814 CDS YP_007380079.1 443616223 14480881 936826..937557 1 NC_020163.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III, epsilon subunit-related 3-5 exonuclease 937557 14480881 APECO78_04490 Escherichia coli APEC O78 DNA polymerase III, epsilon subunit-related 3-5 exonuclease YP_007380079.1 936826 D 1274814 CDS YP_007380080.1 443616224 14484596 938094..938879 1 NC_020163.1 aminopeptidase 938879 14484596 APECO78_04495 Escherichia coli APEC O78 aminopeptidase YP_007380080.1 938094 D 1274814 CDS YP_007380081.1 443616225 14480883 complement(939016..939495) 1 NC_020163.1 hypothetical protein 939495 14480883 APECO78_04500 Escherichia coli APEC O78 hypothetical protein YP_007380081.1 939016 R 1274814 CDS YP_007380082.1 443616226 14480884 complement(939505..940419) 1 NC_020163.1 hypothetical protein 940419 14480884 APECO78_04505 Escherichia coli APEC O78 hypothetical protein YP_007380082.1 939505 R 1274814 CDS YP_007380083.1 443616227 14480885 complement(940463..940945) 1 NC_020163.1 COG3157 Hemolysin-coregulated protein (uncharacterized); Hcp-like protein 940945 14480885 APECO78_04510 Escherichia coli APEC O78 Hcp-like protein YP_007380083.1 940463 R 1274814 CDS YP_007380084.1 443616228 14480886 complement(940969..941124) 1 NC_020163.1 hypothetical protein 941124 14480886 APECO78_04515 Escherichia coli APEC O78 hypothetical protein YP_007380084.1 940969 R 1274814 CDS YP_007380085.1 443616229 14480887 941343..943979 1 NC_020163.1 COG3209 Rhs family protein; putative protein rhsD 943979 14480887 APECO78_04520 Escherichia coli APEC O78 putative protein rhsD YP_007380085.1 941343 D 1274814 CDS YP_007380086.1 443616230 14480888 943994..944440 1 NC_020163.1 hypothetical protein 944440 14480888 APECO78_04525 Escherichia coli APEC O78 hypothetical protein YP_007380086.1 943994 D 1274814 CDS YP_007380087.1 443616231 14480889 944794..945837 1 NC_020163.1 COG5433 Transposase; transposase 945837 14480889 APECO78_04530 Escherichia coli APEC O78 transposase YP_007380087.1 944794 D 1274814 CDS YP_007380088.1 443616232 14480890 complement(945879..946649) 1 NC_020163.1 COG0388 Predicted amidohydrolase; C-N hydrolase family amidase 946649 14480890 APECO78_04535 Escherichia coli APEC O78 C-N hydrolase family amidase YP_007380088.1 945879 R 1274814 CDS YP_007380089.1 443616233 14480891 946803..947276 1 NC_020163.1 C-lysozyme inhibitor 947276 14480891 APECO78_04540 Escherichia coli APEC O78 C-lysozyme inhibitor YP_007380089.1 946803 D 1274814 CDS YP_007380090.1 443616234 14480892 complement(947319..949763) 1 NC_020163.1 COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase 949763 fadE 14480892 fadE Escherichia coli APEC O78 acyl-CoA dehydrogenase YP_007380090.1 947319 R 1274814 CDS YP_007380091.1 443616235 14480893 950003..950581 1 NC_020163.1 COG0279 Phosphoheptose isomerase; phosphoheptose isomerase 950581 14480893 APECO78_04550 Escherichia coli APEC O78 phosphoheptose isomerase YP_007380091.1 950003 D 1274814 CDS YP_007380092.1 443616236 14480894 950787..951554 1 NC_020163.1 COG0121 Predicted glutamine amidotransferase; amidotransferase 951554 14480894 APECO78_04555 Escherichia coli APEC O78 amidotransferase YP_007380092.1 950787 D 1274814 CDS YP_007380093.1 443616237 14480895 complement(951525..952265) 1 NC_020163.1 COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein 952265 14480895 APECO78_04560 Escherichia coli APEC O78 hypothetical protein YP_007380093.1 951525 R 1274814 CDS YP_007380094.1 443616238 14480896 952566..953315 1 NC_020163.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein 953315 14480896 APECO78_04565 Escherichia coli APEC O78 hypothetical protein YP_007380094.1 952566 D 1274814 CDS YP_007380095.1 443616239 14480897 953491..953988 1 NC_020163.1 COG1943 Transposase and inactivated derivatives; hypothetical protein 953988 14480897 APECO78_04570 Escherichia coli APEC O78 hypothetical protein YP_007380095.1 953491 D 1274814 CDS YP_007380096.1 443616240 14480898 954130..954252 1 NC_020163.1 Mannitol-1-phosphate 5-dehydrogenase 954252 14480898 APECO78_04575 Escherichia coli APEC O78 Mannitol-1-phosphate 5-dehydrogenase YP_007380096.1 954130 D 1274814 CDS YP_007380097.1 443616241 14480899 complement(954306..956045) 1 NC_020163.1 COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA 956045 14480899 APECO78_04580 Escherichia coli APEC O78 flagellar biosynthesis protein FlhA YP_007380097.1 954306 R 1274814 CDS YP_007380098.1 443616242 14480900 955990..956775 1 NC_020163.1 COG1360 Flagellar motor protein; hypothetical protein 956775 14480900 APECO78_04585 Escherichia coli APEC O78 hypothetical protein YP_007380098.1 955990 D 1274814 CDS YP_007380099.1 443616243 14480901 956846..957901 1 NC_020163.1 COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase IV 957901 14480901 APECO78_04590 Escherichia coli APEC O78 DNA polymerase IV YP_007380099.1 956846 D 1274814 CDS YP_007380100.1 443616244 14480902 957898..958350 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acyltransferase 958350 14480902 APECO78_04595 Escherichia coli APEC O78 acyltransferase YP_007380100.1 957898 D 1274814 CDS YP_007380101.1 443616245 14480903 958657..958923 1 NC_020163.1 COG1690 Uncharacterized conserved protein; hypothetical protein 958923 14480903 APECO78_04600 Escherichia coli APEC O78 hypothetical protein YP_007380101.1 958657 D 1274814 CDS YP_007380102.1 443616246 14480904 958892..959089 1 NC_020163.1 COG1186 Protein chain release factor B; peptide chain release factor-like protein 959089 14480904 APECO78_04605 Escherichia coli APEC O78 peptide chain release factor-like protein YP_007380102.1 958892 D 1274814 CDS YP_007380103.1 443616247 14480905 958966..959223 1 NC_020163.1 COG1186 Protein chain release factor B; peptide chain release factor-like protein 959223 prfH 14480905 prfH Escherichia coli APEC O78 peptide chain release factor-like protein YP_007380103.1 958966 D 1274814 CDS YP_007380104.1 443616248 14480906 complement(959280..960737) 1 NC_020163.1 COG2195 Di- and tripeptidases; aminoacyl-histidine dipeptidase 960737 14480906 APECO78_04615 Escherichia coli APEC O78 aminoacyl-histidine dipeptidase YP_007380104.1 959280 R 1274814 CDS YP_007380105.1 443616249 14480907 960998..961456 1 NC_020163.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; xanthine-guanine phosphoribosyltransferase 961456 14480907 APECO78_04620 Escherichia coli APEC O78 xanthine-guanine phosphoribosyltransferase YP_007380105.1 960998 D 1274814 CDS YP_007380106.1 443616250 14480908 961548..962792 1 NC_020163.1 COG1073 Hydrolases of the alpha/beta superfamily; fermentation/respiration switch protein 962792 frsA 14480908 frsA Escherichia coli APEC O78 fermentation/respiration switch protein YP_007380106.1 961548 D 1274814 CDS YP_007380107.1 443616251 14480909 962850..963182 1 NC_020163.1 DNA-binding transcriptional regulator Crl 963182 14480909 APECO78_04630 Escherichia coli APEC O78 DNA-binding transcriptional regulator Crl YP_007380107.1 962850 D 1274814 CDS YP_007380108.1 443616252 14480910 complement(963289..964344) 1 NC_020163.1 COG3203 Outer membrane protein (porin); outer membrane phosphoporin protein E 964344 14480910 APECO78_04635 Escherichia coli APEC O78 outer membrane phosphoporin protein E YP_007380108.1 963289 R 1274814 CDS YP_007380109.1 443616253 14480911 964632..965735 1 NC_020163.1 COG0263 Glutamate 5-kinase; gamma-glutamyl kinase 965735 14480911 APECO78_04640 Escherichia coli APEC O78 gamma-glutamyl kinase YP_007380109.1 964632 D 1274814 CDS YP_007380110.1 443616254 14480912 965747..967000 1 NC_020163.1 COG0014 Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 967000 proA 14480912 proA Escherichia coli APEC O78 gamma-glutamyl phosphate reductase YP_007380110.1 965747 D 1274814 CDS YP_007380111.1 443616255 14484597 complement(967205..968368) 1 NC_020163.1 COG0582 Integrase; hypothetical protein 968368 14484597 APECO78_04650 Escherichia coli APEC O78 hypothetical protein YP_007380111.1 967205 R 1274814 CDS YP_007380112.1 443616256 14480914 complement(968595..968900) 1 NC_020163.1 hypothetical protein 968900 14480914 APECO78_04655 Escherichia coli APEC O78 hypothetical protein YP_007380112.1 968595 R 1274814 CDS YP_007380113.1 443616257 14480915 complement(968900..969262) 1 NC_020163.1 hypothetical protein 969262 14480915 APECO78_04660 Escherichia coli APEC O78 hypothetical protein YP_007380113.1 968900 R 1274814 CDS YP_007380114.1 443616258 14480916 complement(969253..969789) 1 NC_020163.1 COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 969789 14480916 APECO78_04665 Escherichia coli APEC O78 hypothetical protein YP_007380114.1 969253 R 1274814 CDS YP_007380115.1 443616259 14480917 complement(969917..970741) 1 NC_020163.1 COG5532 Uncharacterized conserved protein; hypothetical protein 970741 14480917 APECO78_04670 Escherichia coli APEC O78 hypothetical protein YP_007380115.1 969917 R 1274814 CDS YP_007380116.1 443616260 14480918 complement(970806..971168) 1 NC_020163.1 hypothetical protein 971168 14480918 APECO78_04675 Escherichia coli APEC O78 hypothetical protein YP_007380116.1 970806 R 1274814 CDS YP_007380117.1 443616261 14480919 971376..971465 1 NC_020163.1 hypothetical protein 971465 14480919 APECO78_04680 Escherichia coli APEC O78 hypothetical protein YP_007380117.1 971376 D 1274814 CDS YP_007380118.1 443616262 14480920 971637..972071 1 NC_020163.1 hypothetical protein 972071 14480920 APECO78_04685 Escherichia coli APEC O78 hypothetical protein YP_007380118.1 971637 D 1274814 CDS YP_007380119.1 443616263 14480921 complement(972043..972249) 1 NC_020163.1 hypothetical protein 972249 14480921 APECO78_04690 Escherichia coli APEC O78 hypothetical protein YP_007380119.1 972043 R 1274814 CDS YP_007380120.1 443616264 14480922 complement(972497..973123) 1 NC_020163.1 COG1396 Predicted transcriptional regulators; Repressor protein C2 973123 14480922 APECO78_04695 Escherichia coli APEC O78 Repressor protein C2 YP_007380120.1 972497 R 1274814 CDS YP_007380121.1 443616265 14480923 973221..973421 1 NC_020163.1 hypothetical protein 973421 14480923 APECO78_04700 Escherichia coli APEC O78 hypothetical protein YP_007380121.1 973221 D 1274814 CDS YP_007380122.1 443616266 14480924 973459..974010 1 NC_020163.1 hypothetical protein 974010 14480924 APECO78_04705 Escherichia coli APEC O78 hypothetical protein YP_007380122.1 973459 D 1274814 CDS YP_007380123.1 443616267 14480925 974186..974365 1 NC_020163.1 hypothetical protein 974365 14480925 APECO78_04710 Escherichia coli APEC O78 hypothetical protein YP_007380123.1 974186 D 1274814 CDS YP_007380124.1 443616268 14480926 974355..975296 1 NC_020163.1 phage replication protein O 975296 14480926 APECO78_04715 Escherichia coli APEC O78 phage replication protein O YP_007380124.1 974355 D 1274814 CDS YP_007380125.1 443616269 14480927 975299..975787 1 NC_020163.1 hypothetical protein 975787 14480927 APECO78_04720 Escherichia coli APEC O78 hypothetical protein YP_007380125.1 975299 D 1274814 CDS YP_007380126.1 443616270 14480928 975787..976440 1 NC_020163.1 phage AdoMet-dependent methyltransferase 976440 14480928 APECO78_04725 Escherichia coli APEC O78 phage AdoMet-dependent methyltransferase YP_007380126.1 975787 D 1274814 CDS YP_007380127.1 443616271 14480929 976437..976763 1 NC_020163.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein 976763 14480929 APECO78_04730 Escherichia coli APEC O78 hypothetical protein YP_007380127.1 976437 D 1274814 CDS YP_007380128.1 443616272 14480930 976760..977149 1 NC_020163.1 COG4570 Holliday junction resolvase; crossover junction endodeoxyribonuclease (holliday junction resolvase) 977149 14480930 APECO78_04735 Escherichia coli APEC O78 crossover junction endodeoxyribonuclease (holliday junction resolvase) YP_007380128.1 976760 D 1274814 CDS YP_007380129.1 443616273 14480931 977169..977978 1 NC_020163.1 phage protein 977978 14480931 APECO78_04740 Escherichia coli APEC O78 phage protein YP_007380129.1 977169 D 1274814 CDS YP_007380130.1 443616274 14480932 977980..978975 1 NC_020163.1 hypothetical protein 978975 14480932 APECO78_04745 Escherichia coli APEC O78 hypothetical protein YP_007380130.1 977980 D 1274814 CDS YP_007380131.1 443616275 14480933 978993..979358 1 NC_020163.1 putative phage antiterminator 979358 14480933 APECO78_04750 Escherichia coli APEC O78 putative phage antiterminator YP_007380131.1 978993 D 1274814 CDS YP_007380132.1 443616276 14480934 complement(979394..979843) 1 NC_020163.1 hypothetical protein 979843 14480934 APECO78_04755 Escherichia coli APEC O78 hypothetical protein YP_007380132.1 979394 R 1274814 CDS YP_007380133.1 443616277 14480935 complement(979865..980806) 1 NC_020163.1 hypothetical protein 980806 14480935 APECO78_04760 Escherichia coli APEC O78 hypothetical protein YP_007380133.1 979865 R 1274814 CDS YP_007380134.1 443616278 14480936 980836..981030 1 NC_020163.1 hypothetical protein 981030 14480936 APECO78_04765 Escherichia coli APEC O78 hypothetical protein YP_007380134.1 980836 D 1274814 CDS YP_007380135.1 443616279 14480937 981074..981277 1 NC_020163.1 hypothetical protein 981277 14480937 APECO78_04770 Escherichia coli APEC O78 hypothetical protein YP_007380135.1 981074 D 1274814 CDS YP_007380136.1 443616280 14480938 981428..982480 1 NC_020163.1 COG0863 DNA modification methylase; putative methyltransferase 982480 14480938 APECO78_04775 Escherichia coli APEC O78 putative methyltransferase YP_007380136.1 981428 D 1274814 CDS YP_007380137.1 443616281 14480939 982461..982883 1 NC_020163.1 putative transmembrane phage holin 982883 14480939 APECO78_04780 Escherichia coli APEC O78 putative transmembrane phage holin YP_007380137.1 982461 D 1274814 CDS YP_007380138.1 443616282 14480940 982887..983363 1 NC_020163.1 COG4678 Muramidase (phage lambda lysozyme); phage lysozyme 983363 14480940 APECO78_04785 Escherichia coli APEC O78 phage lysozyme YP_007380138.1 982887 D 1274814 CDS YP_007380139.1 443616283 14480941 984453..984803 1 NC_020163.1 COG1403 Restriction endonuclease; phage protein 984803 14480941 APECO78_04790 Escherichia coli APEC O78 phage protein YP_007380139.1 984453 D 1274814 CDS YP_007380140.1 443616284 14480942 984929..985423 1 NC_020163.1 COG3747 Phage terminase, small subunit; phage terminase small subunit 985423 14480942 APECO78_04795 Escherichia coli APEC O78 phage terminase small subunit YP_007380140.1 984929 D 1274814 CDS YP_007380141.1 443616285 14480943 985420..987153 1 NC_020163.1 COG4626 Phage terminase-like protein, large subunit; phage terminase, large subunit 987153 14480943 APECO78_04800 Escherichia coli APEC O78 phage terminase, large subunit YP_007380141.1 985420 D 1274814 CDS YP_007380142.1 443616286 14480944 987165..987347 1 NC_020163.1 hypothetical protein 987347 14480944 APECO78_04805 Escherichia coli APEC O78 hypothetical protein YP_007380142.1 987165 D 1274814 CDS YP_007380143.1 443616287 14480945 987347..988588 1 NC_020163.1 COG4695 Phage-related protein; phage portal protein 988588 14480945 APECO78_04810 Escherichia coli APEC O78 phage portal protein YP_007380143.1 987347 D 1274814 CDS YP_007380144.1 443616288 14480946 988530..989216 1 NC_020163.1 COG3740 Phage head maturation protease; phage pro-head protease 989216 14480946 APECO78_04815 Escherichia coli APEC O78 phage pro-head protease YP_007380144.1 988530 D 1274814 CDS YP_007380145.1 443616289 14480947 989231..990436 1 NC_020163.1 COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; putative major capsid protein 990436 14480947 APECO78_04820 Escherichia coli APEC O78 putative major capsid protein YP_007380145.1 989231 D 1274814 CDS YP_007380146.1 443616290 14480948 990486..990686 1 NC_020163.1 hypothetical protein 990686 14480948 APECO78_04825 Escherichia coli APEC O78 hypothetical protein YP_007380146.1 990486 D 1274814 CDS YP_007380147.1 443616291 14480949 990689..991012 1 NC_020163.1 phage protein 991012 14480949 APECO78_04830 Escherichia coli APEC O78 phage protein YP_007380147.1 990689 D 1274814 CDS YP_007380148.1 443616292 14480950 991009..991419 1 NC_020163.1 COG5614 Bacteriophage head-tail adaptor; bacteriophage protein 991419 14480950 APECO78_04835 Escherichia coli APEC O78 bacteriophage protein YP_007380148.1 991009 D 1274814 CDS YP_007380149.1 443616293 14480951 991394..991900 1 NC_020163.1 prophage protein 991900 14480951 APECO78_04840 Escherichia coli APEC O78 prophage protein YP_007380149.1 991394 D 1274814 CDS YP_007380150.1 443616294 14480952 991897..992457 1 NC_020163.1 hypothetical protein 992457 14480952 APECO78_04845 Escherichia coli APEC O78 hypothetical protein YP_007380150.1 991897 D 1274814 CDS YP_007380151.1 443616295 14480953 992466..992636 1 NC_020163.1 hypothetical protein 992636 14480953 APECO78_04850 Escherichia coli APEC O78 hypothetical protein YP_007380151.1 992466 D 1274814 CDS YP_007380152.1 443616296 14480954 992620..994116 1 NC_020163.1 COG4386 Mu-like prophage tail sheath protein gpL; sheath protein 994116 14480954 APECO78_04855 Escherichia coli APEC O78 sheath protein YP_007380152.1 992620 D 1274814 CDS YP_007380153.1 443616297 14480955 994116..994472 1 NC_020163.1 phage protein 994472 14480955 APECO78_04860 Escherichia coli APEC O78 phage protein YP_007380153.1 994116 D 1274814 CDS YP_007380154.1 443616298 14480956 994472..994741 1 NC_020163.1 phage protein 994741 14480956 APECO78_04865 Escherichia coli APEC O78 phage protein YP_007380154.1 994472 D 1274814 CDS YP_007380155.1 443616299 14480957 994883..996718 1 NC_020163.1 tail protein 996718 14480957 APECO78_04870 Escherichia coli APEC O78 tail protein YP_007380155.1 994883 D 1274814 CDS YP_007380156.1 443616300 14480958 996779..998107 1 NC_020163.1 COG4228 Mu-like prophage DNA circulation protein; tail/DNA circulation protein 998107 14480958 APECO78_04875 Escherichia coli APEC O78 tail/DNA circulation protein YP_007380156.1 996779 D 1274814 CDS YP_007380157.1 443616301 14480959 998104..999183 1 NC_020163.1 COG4379 Mu-like prophage tail protein gpP; putative phage tail protein 999183 14480959 APECO78_04880 Escherichia coli APEC O78 putative phage tail protein YP_007380157.1 998104 D 1274814 CDS YP_007380158.1 443616302 14480960 999183..999731 1 NC_020163.1 COG4384 Mu-like prophage protein gp45; putative phage tail protein 999731 14480960 APECO78_04885 Escherichia coli APEC O78 putative phage tail protein YP_007380158.1 999183 D 1274814 CDS YP_007380159.1 443616303 14480961 999728..1000156 1 NC_020163.1 COG4381 Mu-like prophage protein gp46; putative phage tail protein 1000156 14480961 APECO78_04890 Escherichia coli APEC O78 putative phage tail protein YP_007380159.1 999728 D 1274814 CDS YP_007380160.1 443616304 14480962 1000143..1001201 1 NC_020163.1 COG3299 Uncharacterized homolog of phage Mu protein gp47; putative tail protein 1001201 14480962 APECO78_04895 Escherichia coli APEC O78 putative tail protein YP_007380160.1 1000143 D 1274814 CDS YP_007380161.1 443616305 14480963 1001192..1001776 1 NC_020163.1 COG3778 Uncharacterized protein conserved in bacteria; putative tail protein 1001776 14480963 APECO78_04900 Escherichia coli APEC O78 putative tail protein YP_007380161.1 1001192 D 1274814 CDS YP_007380162.1 443616306 14480964 1001780..1002541 1 NC_020163.1 putative tail fiber/collar phage protein 1002541 14480964 APECO78_04905 Escherichia coli APEC O78 putative tail fiber/collar phage protein YP_007380162.1 1001780 D 1274814 CDS YP_007380163.1 443616307 14480965 1002538..1003143 1 NC_020163.1 tail fiber assembly 1003143 14480965 APECO78_04910 Escherichia coli APEC O78 tail fiber assembly YP_007380163.1 1002538 D 1274814 CDS YP_007380164.1 443616308 14480966 complement(1003707..1004216) 1 NC_020163.1 variable tail fiber protein 1004216 14480966 APECO78_04915 Escherichia coli APEC O78 variable tail fiber protein YP_007380164.1 1003707 R 1274814 CDS YP_007380165.1 443616309 14480967 1004246..1004800 1 NC_020163.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA-invertase 1004800 14480967 APECO78_04920 Escherichia coli APEC O78 DNA-invertase YP_007380165.1 1004246 D 1274814 CDS YP_007380166.1 443616310 14480968 complement(1005143..1005640) 1 NC_020163.1 hypothetical protein 1005640 14480968 APECO78_04925 Escherichia coli APEC O78 hypothetical protein YP_007380166.1 1005143 R 1274814 CDS YP_007380167.1 443616311 14480969 1006029..1006133 1 NC_020163.1 hypothetical protein 1006133 14480969 APECO78_04930 Escherichia coli APEC O78 hypothetical protein YP_007380167.1 1006029 D 1274814 CDS YP_007380168.1 443616312 14480970 complement(1006240..1008993) 1 NC_020163.1 COG0613 Predicted metal-dependent phosphoesterases (PHP family); hypothetical protein 1008993 14480970 APECO78_04935 Escherichia coli APEC O78 hypothetical protein YP_007380168.1 1006240 R 1274814 CDS YP_007380169.1 443616313 14480971 complement(1009528..1009938) 1 NC_020163.1 COG0583 Transcriptional regulator; putative transcriptional regulator 1009938 14480971 APECO78_04940 Escherichia coli APEC O78 putative transcriptional regulator YP_007380169.1 1009528 R 1274814 CDS YP_007380170.1 443616314 14480972 complement(1009917..1010873) 1 NC_020163.1 COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; hypothetical protein 1010873 14480972 APECO78_04945 Escherichia coli APEC O78 hypothetical protein YP_007380170.1 1009917 R 1274814 CDS YP_007380171.1 443616315 14480973 complement(1010883..1013081) 1 NC_020163.1 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; oxidoreductase with molybdenum-binding domain 1013081 14480973 APECO78_04950 Escherichia coli APEC O78 oxidoreductase with molybdenum-binding domain YP_007380171.1 1010883 R 1274814 CDS YP_007380172.1 443616316 14480974 complement(1013078..1014034) 1 NC_020163.1 COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; oxidoreductase 1014034 14480974 APECO78_04955 Escherichia coli APEC O78 oxidoreductase YP_007380172.1 1013078 R 1274814 CDS YP_007380173.1 443616317 14480975 complement(1014031..1014720) 1 NC_020163.1 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; aldehyde oxidoreductase 2Fe-2S subunit 1014720 14480975 APECO78_04960 Escherichia coli APEC O78 aldehyde oxidoreductase 2Fe-2S subunit YP_007380173.1 1014031 R 1274814 CDS YP_007380174.1 443616318 14480976 1015138..1015752 1 NC_020163.1 COG3477 Predicted periplasmic/secreted protein; hypothetical protein 1015752 14480976 APECO78_04965 Escherichia coli APEC O78 hypothetical protein YP_007380174.1 1015138 D 1274814 CDS YP_007380175.1 443616319 14480977 complement(1016000..1016329) 1 NC_020163.1 COG0727 Predicted Fe-S-cluster oxidoreductase; ferredoxin 1016329 14480977 APECO78_04970 Escherichia coli APEC O78 ferredoxin YP_007380175.1 1016000 R 1274814 CDS YP_007380176.1 443616320 14480978 complement(1016642..1017352) 1 NC_020163.1 hypothetical protein 1017352 14480978 APECO78_04975 Escherichia coli APEC O78 hypothetical protein YP_007380176.1 1016642 R 1274814 CDS YP_007380177.1 443616321 14480979 complement(1017321..1018964) 1 NC_020163.1 hypothetical protein 1018964 14480979 APECO78_04980 Escherichia coli APEC O78 hypothetical protein YP_007380177.1 1017321 R 1274814 CDS YP_007380178.1 443616322 14480980 complement(1018954..1021479) 1 NC_020163.1 hypothetical protein 1021479 14480980 APECO78_04985 Escherichia coli APEC O78 hypothetical protein YP_007380178.1 1018954 R 1274814 CDS YP_007380179.1 443616323 14480981 complement(1021491..1022159) 1 NC_020163.1 chaperone 1022159 14480981 APECO78_04990 Escherichia coli APEC O78 chaperone YP_007380179.1 1021491 R 1274814 CDS YP_007380180.1 443616324 14480982 complement(1022217..1022804) 1 NC_020163.1 common pilus ECP 1022804 14480982 APECO78_04995 Escherichia coli APEC O78 common pilus ECP YP_007380180.1 1022217 R 1274814 CDS YP_007380181.1 443616325 14480983 complement(1022879..1023469) 1 NC_020163.1 COG2771 DNA-binding HTH domain-containing proteins; transcriptional regulator 1023469 14480983 APECO78_05000 Escherichia coli APEC O78 transcriptional regulator YP_007380181.1 1022879 R 1274814 CDS YP_007380182.1 443616326 14480984 1024244..1024471 1 NC_020163.1 hypothetical protein 1024471 14480984 APECO78_05005 Escherichia coli APEC O78 hypothetical protein YP_007380182.1 1024244 D 1274814 CDS YP_007380183.1 443616327 14480985 complement(1024506..1024646) 1 NC_020163.1 COG0257 Ribosomal protein L36; 50S ribosomal protein L36 1024646 14480985 APECO78_05010 Escherichia coli APEC O78 50S ribosomal protein L36 YP_007380183.1 1024506 R 1274814 CDS YP_007380184.1 443616328 14480986 complement(1024646..1024909) 1 NC_020163.1 COG0254 Ribosomal protein L31; 50S ribosomal protein L31 type B 1024909 rpmE2 14480986 rpmE2 Escherichia coli APEC O78 50S ribosomal protein L31 type B YP_007380184.1 1024646 R 1274814 CDS YP_007380185.1 443616329 14480987 complement(1025273..1025374) 1 NC_020163.1 hypothetical protein 1025374 14480987 APECO78_05020 Escherichia coli APEC O78 hypothetical protein YP_007380185.1 1025273 R 1274814 CDS YP_007380186.1 443616330 14480988 complement(1025499..1025618) 1 NC_020163.1 hypothetical protein 1025618 14480988 APECO78_05025 Escherichia coli APEC O78 hypothetical protein YP_007380186.1 1025499 R 1274814 CDS YP_007380187.1 443616331 14480989 1026489..1030739 1 NC_020163.1 putative adhesin/invasin 1030739 14480989 APECO78_05030 Escherichia coli APEC O78 putative adhesin/invasin YP_007380187.1 1026489 D 1274814 CDS YP_007380188.1 443616332 14480990 complement(1030879..1031730) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator, AraC family protein 1031730 14480990 APECO78_05035 Escherichia coli APEC O78 transcriptional regulator, AraC family protein YP_007380188.1 1030879 R 1274814 CDS YP_007380189.1 443616333 14480991 complement(1032321..1032914) 1 NC_020163.1 COG3059 Predicted membrane protein; hypothetical protein 1032914 14480991 APECO78_05040 Escherichia coli APEC O78 hypothetical protein YP_007380189.1 1032321 R 1274814 CDS YP_007380190.1 443616334 14480992 complement(1032926..1033162) 1 NC_020163.1 hypothetical protein 1033162 14480992 APECO78_05045 Escherichia coli APEC O78 hypothetical protein YP_007380190.1 1032926 R 1274814 CDS YP_007380191.1 443616335 14480993 complement(1033271..1034596) 1 NC_020163.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; pyridine nucleotide-disulfide oxidoreductase 1034596 14480993 APECO78_05050 Escherichia coli APEC O78 pyridine nucleotide-disulfide oxidoreductase YP_007380191.1 1033271 R 1274814 CDS YP_007380192.1 443616336 14480994 1034822..1035676 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator, ARAC-type 1035676 14480994 APECO78_05055 Escherichia coli APEC O78 DNA-binding transcriptional regulator, ARAC-type YP_007380192.1 1034822 D 1274814 CDS YP_007380193.1 443616337 14480995 1036204..1036923 1 NC_020163.1 COG0247 Fe-S oxidoreductase; oxidoreductase 1036923 14480995 APECO78_05060 Escherichia coli APEC O78 oxidoreductase YP_007380193.1 1036204 D 1274814 CDS YP_007380194.1 443616338 14480996 1036934..1038361 1 NC_020163.1 COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain; electron transport protein with ferredoxin-like domai 1038361 14480996 APECO78_05065 Escherichia coli APEC O78 electron transport protein with ferredoxin-like domai YP_007380194.1 1036934 D 1274814 CDS YP_007380195.1 443616339 14480997 1038354..1039049 1 NC_020163.1 COG1556 Uncharacterized conserved protein; transporter 1039049 14480997 APECO78_05070 Escherichia coli APEC O78 transporter YP_007380195.1 1038354 D 1274814 CDS YP_007380196.1 443616340 14480998 complement(1039292..1039960) 1 NC_020163.1 inner membrane protein 1039960 14480998 APECO78_05075 Escherichia coli APEC O78 inner membrane protein YP_007380196.1 1039292 R 1274814 CDS YP_007380197.1 443616341 14480999 complement(1040173..1041843) 1 NC_020163.1 COG2303 Choline dehydrogenase and related flavoproteins; choline dehydrogenase 1041843 14480999 APECO78_05080 Escherichia coli APEC O78 choline dehydrogenase YP_007380197.1 1040173 R 1274814 CDS YP_007380198.1 443616342 14481000 complement(1041857..1043329) 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; betaine aldehyde dehydrogenase 1043329 14481000 APECO78_05085 Escherichia coli APEC O78 betaine aldehyde dehydrogenase YP_007380198.1 1041857 R 1274814 CDS YP_007380199.1 443616343 14481001 complement(1043343..1043930) 1 NC_020163.1 COG1309 Transcriptional regulator; transcriptional regulator BetI 1043930 14481001 APECO78_05090 Escherichia coli APEC O78 transcriptional regulator BetI YP_007380199.1 1043343 R 1274814 CDS YP_007380200.1 443616344 14481002 1044059..1046092 1 NC_020163.1 COG1292 Choline-glycine betaine transporter; choline transport protein BetT 1046092 14481002 APECO78_05095 Escherichia coli APEC O78 choline transport protein BetT YP_007380200.1 1044059 D 1274814 CDS YP_007380201.1 443616345 14481003 complement(1048097..1049029) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 1049029 14481003 APECO78_05110 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007380201.1 1048097 R 1274814 CDS YP_007380202.1 443616346 14481004 complement(1049121..1049618) 1 NC_020163.1 hypothetical protein 1049618 14481004 APECO78_05115 Escherichia coli APEC O78 hypothetical protein YP_007380202.1 1049121 R 1274814 CDS YP_007380203.1 443616347 14481005 1049876..1050481 1 NC_020163.1 COG0666 FOG: Ankyrin repeat; putative transcription factor 1050481 14481005 APECO78_05120 Escherichia coli APEC O78 putative transcription factor YP_007380203.1 1049876 D 1274814 CDS YP_007380204.1 443616348 14481006 1050521..1051384 1 NC_020163.1 COG0097 Ribosomal protein L6P/L9E; hypothetical protein 1051384 14481006 APECO78_05125 Escherichia coli APEC O78 hypothetical protein YP_007380204.1 1050521 D 1274814 CDS YP_007380205.1 443616349 14481007 1051374..1052921 1 NC_020163.1 COG0074 Succinyl-CoA synthetase, alpha subunit; acyl-CoA synthetase 1052921 14481007 APECO78_05130 Escherichia coli APEC O78 acyl-CoA synthetase YP_007380205.1 1051374 D 1274814 CDS YP_007380206.1 443616350 14481008 1052921..1054339 1 NC_020163.1 hypothetical protein 1054339 14481008 APECO78_05135 Escherichia coli APEC O78 hypothetical protein YP_007380206.1 1052921 D 1274814 CDS YP_007380207.1 443616351 14481009 1054482..1055432 1 NC_020163.1 COG0549 Carbamate kinase; carbamate kinase 1055432 14481009 APECO78_05140 Escherichia coli APEC O78 carbamate kinase YP_007380207.1 1054482 D 1274814 CDS YP_007380208.1 443616352 14481010 1055442..1056824 1 NC_020163.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases; deaminase 1056824 14481010 APECO78_05145 Escherichia coli APEC O78 deaminase YP_007380208.1 1055442 D 1274814 CDS YP_007380209.1 443616353 14481011 1057201..1058250 1 NC_020163.1 COG1064 Zn-dependent alcohol dehydrogenases; putative oxidoreductase 1058250 14481011 APECO78_05150 Escherichia coli APEC O78 putative oxidoreductase YP_007380209.1 1057201 D 1274814 CDS YP_007380210.1 443616354 14481012 1058493..1059308 1 NC_020163.1 hypothetical protein 1059308 14481012 APECO78_05155 Escherichia coli APEC O78 hypothetical protein YP_007380210.1 1058493 D 1274814 CDS YP_007380211.1 443616355 14484598 1059720..1059965 1 NC_020163.1 hypothetical protein 1059965 14484598 APECO78_05160 Escherichia coli APEC O78 hypothetical protein YP_007380211.1 1059720 D 1274814 CDS YP_007380212.1 443616356 14481014 complement(1059982..1060614) 1 NC_020163.1 COG1280 Putative threonine efflux protein; neutral amino-acid efflux system 1060614 14481014 APECO78_05165 Escherichia coli APEC O78 neutral amino-acid efflux system YP_007380212.1 1059982 R 1274814 CDS YP_007380213.1 443616357 14481015 1060800..1061075 1 NC_020163.1 hypothetical protein 1061075 14481015 APECO78_05170 Escherichia coli APEC O78 hypothetical protein YP_007380213.1 1060800 D 1274814 CDS YP_007380214.1 443616358 14481016 complement(1061173..1062759) 1 NC_020163.1 COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; propionate catabolism operon regulatory protein PrpR 1062759 14481016 APECO78_05175 Escherichia coli APEC O78 propionate catabolism operon regulatory protein PrpR YP_007380214.1 1061173 R 1274814 CDS YP_007380215.1 443616359 14481017 1062997..1063887 1 NC_020163.1 COG2513 PEP phosphonomutase and related enzymes; 2-methylisocitrate lyase 1063887 prpB 14481017 prpB Escherichia coli APEC O78 2-methylisocitrate lyase YP_007380215.1 1062997 D 1274814 CDS YP_007380216.1 443616360 14481018 1063932..1065101 1 NC_020163.1 COG0372 Citrate synthase; methylcitrate synthase 1065101 14481018 APECO78_05185 Escherichia coli APEC O78 methylcitrate synthase YP_007380216.1 1063932 D 1274814 CDS YP_007380217.1 443616361 14481019 1065135..1066586 1 NC_020163.1 COG2079 Uncharacterized protein involved in propionate catabolism; 2-methylcitrate dehydratase 1066586 prpD 14481019 prpD Escherichia coli APEC O78 2-methylcitrate dehydratase YP_007380217.1 1065135 D 1274814 CDS YP_007380218.1 443616362 14481020 1066626..1068416 1 NC_020163.1 COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; propionyl-CoA synthetase 1068416 prpE 14481020 prpE Escherichia coli APEC O78 propionyl-CoA synthetase YP_007380218.1 1066626 D 1274814 CDS YP_007380219.1 443616363 14481021 1068794..1070053 1 NC_020163.1 COG1457 Purine-cytosine permease and related proteins; cytosine permease 1070053 codB 14481021 codB Escherichia coli APEC O78 cytosine permease YP_007380219.1 1068794 D 1274814 CDS YP_007380220.1 443616364 14481022 1070043..1071326 1 NC_020163.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases; cytosine deaminase 1071326 14481022 APECO78_05205 Escherichia coli APEC O78 cytosine deaminase YP_007380220.1 1070043 D 1274814 CDS YP_007380221.1 443616365 14481023 complement(1071366..1072265) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator CynR 1072265 14481023 APECO78_05210 Escherichia coli APEC O78 DNA-binding transcriptional regulator CynR YP_007380221.1 1071366 R 1274814 CDS YP_007380222.1 443616366 14481024 1072375..1073034 1 NC_020163.1 COG0288 Carbonic anhydrase; carbonate dehydratase 1073034 14481024 APECO78_05215 Escherichia coli APEC O78 carbonate dehydratase YP_007380222.1 1072375 D 1274814 CDS YP_007380223.1 443616367 14481025 1073065..1073535 1 NC_020163.1 COG1513 Cyanate lyase; cyanate hydratase 1073535 14481025 APECO78_05220 Escherichia coli APEC O78 cyanate hydratase YP_007380223.1 1073065 D 1274814 CDS YP_007380224.1 443616368 14481026 1073541..1074722 1 NC_020163.1 COG2807 Cyanate permease; cyanate transporter 1074722 cynX 14481026 cynX Escherichia coli APEC O78 cyanate transporter YP_007380224.1 1073541 D 1274814 CDS YP_007380225.1 443616369 14481027 complement(1074825..1075436) 1 NC_020163.1 COG0110 Acetyltransferase (isoleucine patch superfamily); galactoside O-acetyltransferase 1075436 lacA 14481027 lacA Escherichia coli APEC O78 galactoside O-acetyltransferase YP_007380225.1 1074825 R 1274814 CDS YP_007380226.1 443616370 14481028 complement(1075502..1076755) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; LacY lactose MFS transporter 1076755 14481028 APECO78_05235 Escherichia coli APEC O78 LacY lactose MFS transporter YP_007380226.1 1075502 R 1274814 CDS YP_007380227.1 443616371 14481029 complement(1076807..1079881) 1 NC_020163.1 COG3250 Beta-galactosidase/beta-glucuronidase; beta-D-galactosidase 1079881 14481029 APECO78_05240 Escherichia coli APEC O78 beta-D-galactosidase YP_007380227.1 1076807 R 1274814 CDS YP_007380228.1 443616372 14481030 complement(1080004..1081086) 1 NC_020163.1 COG1609 Transcriptional regulators; lac repressor 1081086 lacI 14481030 lacI Escherichia coli APEC O78 lac repressor YP_007380228.1 1080004 R 1274814 CDS YP_007380229.1 443616373 14481031 complement(1081163..1082110) 1 NC_020163.1 COG1414 Transcriptional regulator; DNA-binding transcriptional activator MhpR 1082110 14481031 APECO78_05250 Escherichia coli APEC O78 DNA-binding transcriptional activator MhpR YP_007380229.1 1081163 R 1274814 CDS YP_007380230.1 443616374 14481032 1082187..1083851 1 NC_020163.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 3-(3-hydroxyphenyl)propionate hydroxylase 1083851 14481032 APECO78_05255 Escherichia coli APEC O78 3-(3-hydroxyphenyl)propionate hydroxylase YP_007380230.1 1082187 D 1274814 CDS YP_007380231.1 443616375 14481033 1083853..1084797 1 NC_020163.1 3-(2,3-dihydroxyphenyl)propionate dioxygenase 1084797 mhpB 14481033 mhpB Escherichia coli APEC O78 3-(2,3-dihydroxyphenyl)propionate dioxygenase YP_007380231.1 1083853 D 1274814 CDS YP_007380232.1 443616376 14481034 1084800..1085681 1 NC_020163.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase 1085681 14481034 APECO78_05265 Escherichia coli APEC O78 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase YP_007380232.1 1084800 D 1274814 CDS YP_007380233.1 443616377 14481035 1085691..1086500 1 NC_020163.1 COG3971 2-keto-4-pentenoate hydratase; 2-keto-4-pentenoate hydratase 1086500 mhpD 14481035 mhpD Escherichia coli APEC O78 2-keto-4-pentenoate hydratase YP_007380233.1 1085691 D 1274814 CDS YP_007380234.1 443616378 14481036 1086497..1087447 1 NC_020163.1 COG4569 Acetaldehyde dehydrogenase (acetylating); acetaldehyde dehydrogenase 1087447 14481036 APECO78_05275 Escherichia coli APEC O78 acetaldehyde dehydrogenase YP_007380234.1 1086497 D 1274814 CDS YP_007380235.1 443616379 14481037 1087444..1088457 1 NC_020163.1 COG0119 Isopropylmalate/homocitrate/citramalate synthases; 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase 1088457 14481037 APECO78_05280 Escherichia coli APEC O78 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase YP_007380235.1 1087444 D 1274814 CDS YP_007380236.1 443616380 14481038 1088633..1089844 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; 3-hydroxyphenylpropionic transporter MhpT 1089844 14481038 APECO78_05285 Escherichia coli APEC O78 3-hydroxyphenylpropionic transporter MhpT YP_007380236.1 1088633 D 1274814 CDS YP_007380237.1 443616381 14481039 1089946..1090485 1 NC_020163.1 COG3122 Uncharacterized protein conserved in bacteria; nucleoprotein/polynucleotide-associated enzyme 1090485 14481039 APECO78_05290 Escherichia coli APEC O78 nucleoprotein/polynucleotide-associated enzyme YP_007380237.1 1089946 D 1274814 CDS YP_007380238.1 443616382 14481040 complement(1090610..1091443) 1 NC_020163.1 COG0627 Predicted esterase; S-formylglutathione hydrolase 1091443 14481040 APECO78_05295 Escherichia coli APEC O78 S-formylglutathione hydrolase YP_007380238.1 1090610 R 1274814 CDS YP_007380239.1 443616383 14481041 complement(1091536..1092645) 1 NC_020163.1 COG1062 Zn-dependent alcohol dehydrogenases, class III; S-(hydroxymethyl)glutathione dehydrogenase 1092645 14481041 APECO78_05300 Escherichia coli APEC O78 S-(hydroxymethyl)glutathione dehydrogenase YP_007380239.1 1091536 R 1274814 CDS YP_007380240.1 443616384 14481042 complement(1092680..1092955) 1 NC_020163.1 COG1937 Uncharacterized protein conserved in bacteria; regulator protein FrmR 1092955 14481042 APECO78_05305 Escherichia coli APEC O78 regulator protein FrmR YP_007380240.1 1092680 R 1274814 CDS YP_007380241.1 443616385 14481043 complement(1093140..1093913) 1 NC_020163.1 hypothetical protein 1093913 14481043 APECO78_05310 Escherichia coli APEC O78 hypothetical protein YP_007380241.1 1093140 R 1274814 CDS YP_007380242.1 443616386 14481044 complement(1093915..1094355) 1 NC_020163.1 COG0110 Acetyltransferase (isoleucine patch superfamily); transferase 1094355 14481044 APECO78_05315 Escherichia coli APEC O78 transferase YP_007380242.1 1093915 R 1274814 CDS YP_007380243.1 443616387 14481045 complement(1094474..1095670) 1 NC_020163.1 COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; glucosyltransferase 1095670 14481045 APECO78_05320 Escherichia coli APEC O78 glucosyltransferase YP_007380243.1 1094474 R 1274814 CDS YP_007380244.1 443616388 14481046 complement(1095680..1096351) 1 NC_020163.1 COG2120 Uncharacterized proteins, LmbE homologs; hypothetical protein 1096351 14481046 APECO78_05325 Escherichia coli APEC O78 hypothetical protein YP_007380244.1 1095680 R 1274814 CDS YP_007380245.1 443616389 14481047 1096967..1097929 1 NC_020163.1 COG4521 ABC-type taurine transport system, periplasmic component; taurine transporter substrate binding subunit 1097929 tauA 14481047 tauA Escherichia coli APEC O78 taurine transporter substrate binding subunit YP_007380245.1 1096967 D 1274814 CDS YP_007380246.1 443616390 14481048 1097942..1098709 1 NC_020163.1 COG4525 ABC-type taurine transport system, ATPase component; taurine transporter ATP-binding subunit 1098709 tauB 14481048 tauB Escherichia coli APEC O78 taurine transporter ATP-binding subunit YP_007380246.1 1097942 D 1274814 CDS YP_007380247.1 443616391 14481049 1098706..1099533 1 NC_020163.1 COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; taurine transporter subunit 1099533 14481049 APECO78_05340 Escherichia coli APEC O78 taurine transporter subunit YP_007380247.1 1098706 D 1274814 CDS YP_007380248.1 443616392 14481050 1099530..1100381 1 NC_020163.1 COG2175 Probable taurine catabolism dioxygenase; taurine dioxygenase 1100381 14481050 APECO78_05345 Escherichia coli APEC O78 taurine dioxygenase YP_007380248.1 1099530 D 1274814 CDS YP_007380249.1 443616393 14481051 complement(1100487..1101461) 1 NC_020163.1 COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase 1101461 14481051 APECO78_05350 Escherichia coli APEC O78 delta-aminolevulinic acid dehydratase YP_007380249.1 1100487 R 1274814 CDS YP_007380250.1 443616394 14481052 complement(1102283..1103188) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 1103188 14481052 APECO78_05355 Escherichia coli APEC O78 IS2 transposase TnpB YP_007380250.1 1102283 R 1274814 CDS YP_007380251.1 443616395 14481053 complement(1103146..1103511) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 1103511 14481053 APECO78_05360 Escherichia coli APEC O78 IS2 repressor TnpA YP_007380251.1 1103146 R 1274814 CDS YP_007380252.1 443616396 14481054 1103627..1105939 1 NC_020163.1 flagellar protein 1105939 14481054 APECO78_05365 Escherichia coli APEC O78 flagellar protein YP_007380252.1 1103627 D 1274814 CDS YP_007380253.1 443616397 14481055 1105952..1106272 1 NC_020163.1 COG3468 Type V secretory pathway, adhesin AidA; Putative flagellin structural protein ; putative exported protein 1106272 14481055 APECO78_05370 Escherichia coli APEC O78 Putative flagellin structural protein ; putative exported protein YP_007380253.1 1105952 D 1274814 CDS YP_007380254.1 443616398 14481056 1106360..1106983 1 NC_020163.1 COG2186 Transcriptional regulators; DNA-binding transcriptional regulator 1106983 14481056 APECO78_05375 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007380254.1 1106360 D 1274814 CDS YP_007380255.1 443616399 14481057 complement(1106984..1108141) 1 NC_020163.1 COG1680 Beta-lactamase class C and other penicillin binding proteins; beta-lactam binding protein AmpH 1108141 14481057 APECO78_05380 Escherichia coli APEC O78 beta-lactam binding protein AmpH YP_007380255.1 1106984 R 1274814 CDS YP_007380256.1 443616400 14481058 1108493..1109713 1 NC_020163.1 COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components; microcin B17 transporter 1109713 14481058 APECO78_05385 Escherichia coli APEC O78 microcin B17 transporter YP_007380256.1 1108493 D 1274814 CDS YP_007380257.1 443616401 14481059 1109726..1110820 1 NC_020163.1 DNA-binding transcriptional regulator 1110820 14481059 APECO78_05390 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007380257.1 1109726 D 1274814 CDS YP_007380258.1 443616402 14481060 complement(1110879..1111187) 1 NC_020163.1 hypothetical protein 1111187 14481060 APECO78_05395 Escherichia coli APEC O78 hypothetical protein YP_007380258.1 1110879 R 1274814 CDS YP_007380259.1 443616403 14481061 1111447..1111659 1 NC_020163.1 hypothetical protein 1111659 14481061 APECO78_05400 Escherichia coli APEC O78 hypothetical protein YP_007380259.1 1111447 D 1274814 CDS YP_007380260.1 443616404 14481062 complement(1111683..1112777) 1 NC_020163.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanyl-alanine synthetase A 1112777 14481062 APECO78_05405 Escherichia coli APEC O78 D-alanyl-alanine synthetase A YP_007380260.1 1111683 R 1274814 CDS YP_007380261.1 443616405 14481063 complement(1113089..1113241) 1 NC_020163.1 hypothetical protein 1113241 14481063 APECO78_05410 Escherichia coli APEC O78 hypothetical protein YP_007380261.1 1113089 R 1274814 CDS YP_007380262.1 443616406 14481064 1113240..1113500 1 NC_020163.1 anti-RssB factor 1113500 14481064 APECO78_05415 Escherichia coli APEC O78 anti-RssB factor YP_007380262.1 1113240 D 1274814 CDS YP_007380263.1 443616407 14481065 1113601..1115016 1 NC_020163.1 COG1785 Alkaline phosphatase; alkaline phosphatase 1115016 14481065 APECO78_05420 Escherichia coli APEC O78 alkaline phosphatase YP_007380263.1 1113601 D 1274814 CDS YP_007380264.1 443616408 14481066 1115135..1115455 1 NC_020163.1 hypothetical protein 1115455 14481066 APECO78_05425 Escherichia coli APEC O78 hypothetical protein YP_007380264.1 1115135 D 1274814 CDS YP_007380265.1 443616409 14481067 1115557..1116672 1 NC_020163.1 COG2199 FOG: GGDEF domain; hypothetical protein 1116672 14481067 APECO78_05430 Escherichia coli APEC O78 hypothetical protein YP_007380265.1 1115557 D 1274814 CDS YP_007380266.1 443616410 14481068 complement(1116689..1117498) 1 NC_020163.1 COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 1117498 14481068 APECO78_05435 Escherichia coli APEC O78 pyrroline-5-carboxylate reductase YP_007380266.1 1116689 R 1274814 CDS YP_007380267.1 443616411 14481069 1117618..1118082 1 NC_020163.1 COG1671 Uncharacterized protein conserved in bacteria; hypothetical protein 1118082 14481069 APECO78_05440 Escherichia coli APEC O78 hypothetical protein YP_007380267.1 1117618 D 1274814 CDS YP_007380268.1 443616412 14481070 1118259..1118783 1 NC_020163.1 COG0703 Shikimate kinase; shikimate kinase 1118783 14481070 APECO78_05445 Escherichia coli APEC O78 shikimate kinase YP_007380268.1 1118259 D 1274814 CDS YP_007380269.1 443616413 14481071 1118833..1119024 1 NC_020163.1 hypothetical protein 1119024 14481071 APECO78_05450 Escherichia coli APEC O78 hypothetical protein YP_007380269.1 1118833 D 1274814 CDS YP_007380270.1 443616414 14481072 1119282..1119959 1 NC_020163.1 hypothetical protein 1119959 14481072 APECO78_05455 Escherichia coli APEC O78 hypothetical protein YP_007380270.1 1119282 D 1274814 CDS YP_007380271.1 443616415 14481073 1120031..1120315 1 NC_020163.1 COG3123 Uncharacterized protein conserved in bacteria; hypothetical protein 1120315 14481073 APECO78_05460 Escherichia coli APEC O78 hypothetical protein YP_007380271.1 1120031 D 1274814 CDS YP_007380272.1 443616416 14481074 complement(1120483..1120602) 1 NC_020163.1 hypothetical protein 1120602 14481074 APECO78_05465 Escherichia coli APEC O78 hypothetical protein YP_007380272.1 1120483 R 1274814 CDS YP_007380273.1 443616417 14481075 1120524..1120805 1 NC_020163.1 hypothetical protein 1120805 14481075 APECO78_05470 Escherichia coli APEC O78 hypothetical protein YP_007380273.1 1120524 D 1274814 CDS YP_007380274.1 443616418 14481076 complement(1120963..1121874) 1 NC_020163.1 COG2974 DNA recombination-dependent growth factor C; nonspecific DNA binding protein 1121874 14481076 APECO78_05475 Escherichia coli APEC O78 nonspecific DNA binding protein YP_007380274.1 1120963 R 1274814 CDS YP_007380275.1 443616419 14481077 1121999..1122907 1 NC_020163.1 COG1940 Transcriptional regulator/sugar kinase; fructokinase 1122907 14481077 APECO78_05480 Escherichia coli APEC O78 fructokinase YP_007380275.1 1121999 D 1274814 CDS YP_007380276.1 443616420 14481078 complement(1123050..1124234) 1 NC_020163.1 COG2814 Arabinose efflux permease; MFS transport protein AraJ 1124234 14481078 APECO78_05485 Escherichia coli APEC O78 MFS transport protein AraJ YP_007380276.1 1123050 R 1274814 CDS YP_007380277.1 443616421 14481079 complement(1124360..1127503) 1 NC_020163.1 COG0419 ATPase involved in DNA repair; exonuclease subunit SbcC 1127503 14481079 APECO78_05490 Escherichia coli APEC O78 exonuclease subunit SbcC YP_007380277.1 1124360 R 1274814 CDS YP_007380278.1 443616422 14481080 complement(1127500..1128702) 1 NC_020163.1 COG0420 DNA repair exonuclease; Nuclease sbcCD subunit D 1128702 14481080 APECO78_05495 Escherichia coli APEC O78 Nuclease sbcCD subunit D YP_007380278.1 1127500 R 1274814 CDS YP_007380279.1 443616423 14481081 1128892..1129581 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator PhoB 1129581 14481081 APECO78_05500 Escherichia coli APEC O78 transcriptional regulator PhoB YP_007380279.1 1128892 D 1274814 CDS YP_007380280.1 443616424 14481082 1129639..1130934 1 NC_020163.1 COG0642 Signal transduction histidine kinase; phosphate regulon sensor protein 1130934 phoR 14481082 phoR Escherichia coli APEC O78 phosphate regulon sensor protein YP_007380280.1 1129639 D 1274814 CDS YP_007380281.1 443616425 14481083 1131341..1132660 1 NC_020163.1 COG1114 Branched-chain amino acid permeases; branched chain amino acid transport system II carrier protein 1132660 14481083 APECO78_05510 Escherichia coli APEC O78 branched chain amino acid transport system II carrier protein YP_007380281.1 1131341 D 1274814 CDS YP_007380282.1 443616426 14481084 1132736..1134109 1 NC_020163.1 COG1113 Gamma-aminobutyrate permease and related permeases; putative proline-specific permease 1134109 14481084 APECO78_05515 Escherichia coli APEC O78 putative proline-specific permease YP_007380282.1 1132736 D 1274814 CDS YP_007380283.1 443616427 14481085 1134265..1136082 1 NC_020163.1 COG0366 Glycosidases; maltodextrin glucosidase 1136082 14481085 APECO78_05520 Escherichia coli APEC O78 maltodextrin glucosidase YP_007380283.1 1134265 D 1274814 CDS YP_007380284.1 443616428 14481086 complement(1136087..1136668) 1 NC_020163.1 COG3124 Uncharacterized protein conserved in bacteria; acyl carrier protein phosphodiesterase 1136668 14481086 APECO78_05525 Escherichia coli APEC O78 acyl carrier protein phosphodiesterase YP_007380284.1 1136087 R 1274814 CDS YP_007380285.1 443616429 14481087 1136761..1137831 1 NC_020163.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1137831 14481087 APECO78_05530 Escherichia coli APEC O78 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_007380285.1 1136761 D 1274814 CDS YP_007380286.1 443616430 14481088 1137887..1139014 1 NC_020163.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1139014 14481088 APECO78_05535 Escherichia coli APEC O78 queuine tRNA-ribosyltransferase YP_007380286.1 1137887 D 1274814 CDS YP_007380287.1 443616431 14481089 1139037..1139369 1 NC_020163.1 COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC 1139369 14481089 APECO78_05540 Escherichia coli APEC O78 preprotein translocase subunit YajC YP_007380287.1 1139037 D 1274814 CDS YP_007380288.1 443616432 14481090 1139397..1141244 1 NC_020163.1 COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD 1141244 14481090 APECO78_05545 Escherichia coli APEC O78 preprotein translocase subunit SecD YP_007380288.1 1139397 D 1274814 CDS YP_007380289.1 443616433 14481091 1141255..1142226 1 NC_020163.1 COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF 1142226 14481091 APECO78_05550 Escherichia coli APEC O78 preprotein translocase subunit SecF YP_007380289.1 1141255 D 1274814 CDS YP_007380290.1 443616434 14481092 1142355..1142702 1 NC_020163.1 COG1403 Restriction endonuclease; hypothetical protein 1142702 14481092 APECO78_05555 Escherichia coli APEC O78 hypothetical protein YP_007380290.1 1142355 D 1274814 CDS YP_007380291.1 443616435 14481093 1142716..1142838 1 NC_020163.1 hypothetical protein 1142838 14481093 APECO78_05560 Escherichia coli APEC O78 hypothetical protein YP_007380291.1 1142716 D 1274814 CDS YP_007380292.1 443616436 14481094 complement(1142879..1143763) 1 NC_020163.1 COG3248 Nucleoside-binding outer membrane protein; nucleoside-specific channel-forming protein Tsx 1143763 14481094 APECO78_05565 Escherichia coli APEC O78 nucleoside-specific channel-forming protein Tsx YP_007380292.1 1142879 R 1274814 CDS YP_007380293.1 443616437 14481095 complement(1144062..1144601) 1 NC_020163.1 hypothetical protein 1144601 14481095 APECO78_05570 Escherichia coli APEC O78 hypothetical protein YP_007380293.1 1144062 R 1274814 CDS YP_007380294.1 443616438 14481096 1144752..1145201 1 NC_020163.1 COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; transcriptional regulator NrdR 1145201 14481096 APECO78_05575 Escherichia coli APEC O78 transcriptional regulator NrdR YP_007380294.1 1144752 D 1274814 CDS YP_007380295.1 443616439 14481097 1145205..1146308 1 NC_020163.1 COG0117 Pyrimidine deaminase; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 1146308 ribD 14481097 ribD Escherichia coli APEC O78 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_007380295.1 1145205 D 1274814 CDS YP_007380296.1 443616440 14481098 1146397..1146867 1 NC_020163.1 COG0054 Riboflavin synthase beta-chain; 6,7-dimethyl-8-ribityllumazine synthase 1146867 14481098 APECO78_05585 Escherichia coli APEC O78 6,7-dimethyl-8-ribityllumazine synthase YP_007380296.1 1146397 D 1274814 CDS YP_007380297.1 443616441 14481099 1146887..1147306 1 NC_020163.1 COG0781 Transcription termination factor; transcription antitermination protein NusB 1147306 14481099 APECO78_05590 Escherichia coli APEC O78 transcription antitermination protein NusB YP_007380297.1 1146887 D 1274814 CDS YP_007380298.1 443616442 14481100 1147384..1148361 1 NC_020163.1 COG0611 Thiamine monophosphate kinase; thiamine monophosphate kinase 1148361 14481100 APECO78_05595 Escherichia coli APEC O78 thiamine monophosphate kinase YP_007380298.1 1147384 D 1274814 CDS YP_007380299.1 443616443 14481101 1148339..1148857 1 NC_020163.1 COG1267 Phosphatidylglycerophosphatase A and related proteins; phosphatidylglycerophosphatase A 1148857 14481101 APECO78_05600 Escherichia coli APEC O78 phosphatidylglycerophosphatase A YP_007380299.1 1148339 D 1274814 CDS YP_007380300.1 443616444 14481102 complement(1148911..1149885) 1 NC_020163.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); oxidoreductase, NAD(P)-binding protein 1149885 14481102 APECO78_05605 Escherichia coli APEC O78 oxidoreductase, NAD(P)-binding protein YP_007380300.1 1148911 R 1274814 CDS YP_007380301.1 443616445 14481103 complement(1150065..1151927) 1 NC_020163.1 COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 1151927 14481103 APECO78_05610 Escherichia coli APEC O78 1-deoxy-D-xylulose-5-phosphate synthase YP_007380301.1 1150065 R 1274814 CDS YP_007380302.1 443616446 14481104 complement(1151952..1152851) 1 NC_020163.1 COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 1152851 14481104 APECO78_05615 Escherichia coli APEC O78 geranyltranstransferase YP_007380302.1 1151952 R 1274814 CDS YP_007380303.1 443616447 14481105 complement(1152851..1153093) 1 NC_020163.1 COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 1153093 14481105 APECO78_05620 Escherichia coli APEC O78 exodeoxyribonuclease VII small subunit YP_007380303.1 1152851 R 1274814 CDS YP_007380304.1 443616448 14481106 1153299..1154747 1 NC_020163.1 COG0301 Thiamine biosynthesis ATP pyrophosphatase; tRNA s(4)U8 sulfurtransferase 1154747 14481106 APECO78_05625 Escherichia coli APEC O78 tRNA s(4)U8 sulfurtransferase YP_007380304.1 1153299 D 1274814 CDS YP_007380305.1 443616449 14481107 complement(1154801..1155391) 1 NC_020163.1 COG0693 Putative intracellular protease/amidase; hypothetical protein 1155391 14481107 APECO78_05630 Escherichia coli APEC O78 hypothetical protein YP_007380305.1 1154801 R 1274814 CDS YP_007380306.1 443616450 14481108 complement(1155354..1156265) 1 NC_020163.1 COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase 1156265 14481108 APECO78_05635 Escherichia coli APEC O78 2-dehydropantoate 2-reductase YP_007380306.1 1155354 R 1274814 CDS YP_007380307.1 443616451 14481109 1156433..1156924 1 NC_020163.1 COG1666 Uncharacterized protein conserved in bacteria; putative nucleotide-binding protein 1156924 14481109 APECO78_05640 Escherichia coli APEC O78 putative nucleotide-binding protein YP_007380307.1 1156433 D 1274814 CDS YP_007380308.1 443616452 14481110 complement(1157052..1158416) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 1158416 14481110 APECO78_05645 Escherichia coli APEC O78 transporter YP_007380308.1 1157052 R 1274814 CDS YP_007380309.1 443616453 14481111 complement(1158565..1159455) 1 NC_020163.1 COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); protoheme IX farnesyltransferase 1159455 14481111 APECO78_05650 Escherichia coli APEC O78 protoheme IX farnesyltransferase YP_007380309.1 1158565 R 1274814 CDS YP_007380310.1 443616454 14481112 complement(1159467..1159796) 1 NC_020163.1 COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4; cytochrome o ubiquinol oxidase subunit IV 1159796 14481112 APECO78_05655 Escherichia coli APEC O78 cytochrome o ubiquinol oxidase subunit IV YP_007380310.1 1159467 R 1274814 CDS YP_007380311.1 443616455 14481113 complement(1159796..1160410) 1 NC_020163.1 COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome o ubiquinol oxidase subunit III 1160410 14481113 APECO78_05660 Escherichia coli APEC O78 cytochrome o ubiquinol oxidase subunit III YP_007380311.1 1159796 R 1274814 CDS YP_007380312.1 443616456 14481114 complement(1160400..1162391) 1 NC_020163.1 COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; cytochrome o ubiquinol oxidase subunit I 1162391 14481114 APECO78_05665 Escherichia coli APEC O78 cytochrome o ubiquinol oxidase subunit I YP_007380312.1 1160400 R 1274814 CDS YP_007380313.1 443616457 14481115 complement(1162413..1163360) 1 NC_020163.1 COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; cytochrome o ubiquinol oxidase subunit II 1163360 14481115 APECO78_05670 Escherichia coli APEC O78 cytochrome o ubiquinol oxidase subunit II YP_007380313.1 1162413 R 1274814 CDS YP_007380314.1 443616458 14481116 complement(1163820..1165295) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; muropeptide transporter 1165295 ampG 14481116 ampG Escherichia coli APEC O78 muropeptide transporter YP_007380314.1 1163820 R 1274814 CDS YP_007380315.1 443616459 14481117 complement(1165339..1165917) 1 NC_020163.1 COG3056 Uncharacterized lipoprotein; hypothetical protein 1165917 14481117 APECO78_05680 Escherichia coli APEC O78 hypothetical protein YP_007380315.1 1165339 R 1274814 CDS YP_007380316.1 443616460 14481118 1166222..1166539 1 NC_020163.1 COG0271 Stress-induced morphogen (activity unknown); regulator of murein genes 1166539 14481118 APECO78_05685 Escherichia coli APEC O78 regulator of murein genes YP_007380316.1 1166222 D 1274814 CDS YP_007380317.1 443616461 14481119 1166548..1166736 1 NC_020163.1 hypothetical protein 1166736 14481119 APECO78_05690 Escherichia coli APEC O78 hypothetical protein YP_007380317.1 1166548 D 1274814 CDS YP_007380318.1 443616462 14481120 1166883..1168181 1 NC_020163.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor 1168181 14481120 APECO78_05695 Escherichia coli APEC O78 trigger factor YP_007380318.1 1166883 D 1274814 CDS YP_007380319.1 443616463 14481121 1168320..1168562 1 NC_020163.1 ATP-dependent Clp protease proteolytic subunit 1168562 14481121 APECO78_05700 Escherichia coli APEC O78 ATP-dependent Clp protease proteolytic subunit YP_007380319.1 1168320 D 1274814 CDS YP_007380320.1 443616464 14481122 1168427..1169050 1 NC_020163.1 COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 1169050 14481122 APECO78_05705 Escherichia coli APEC O78 ATP-dependent Clp protease proteolytic subunit YP_007380320.1 1168427 D 1274814 CDS YP_007380321.1 443616465 14481123 complement(1168949..1169128) 1 NC_020163.1 hypothetical protein 1169128 14481123 APECO78_05710 Escherichia coli APEC O78 hypothetical protein YP_007380321.1 1168949 R 1274814 CDS YP_007380322.1 443616466 14481124 1169176..1170450 1 NC_020163.1 COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent protease ATP-binding subunit ClpX 1170450 14481124 APECO78_05715 Escherichia coli APEC O78 ATP-dependent protease ATP-binding subunit ClpX YP_007380322.1 1169176 D 1274814 CDS YP_007380323.1 443616467 14481125 1170638..1172992 1 NC_020163.1 COG0466 ATP-dependent Lon protease, bacterial type; DNA-binding ATP-dependent protease La 1172992 14481125 APECO78_05720 Escherichia coli APEC O78 DNA-binding ATP-dependent protease La YP_007380323.1 1170638 D 1274814 CDS YP_007380324.1 443616468 14481126 1173201..1173473 1 NC_020163.1 COG0776 Bacterial nucleoid DNA-binding protein; transcriptional regulator HU subunit beta 1173473 14481126 APECO78_05725 Escherichia coli APEC O78 transcriptional regulator HU subunit beta YP_007380324.1 1173201 D 1274814 CDS YP_007380325.1 443616469 14481127 1173665..1175536 1 NC_020163.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; periplasmic folding chaperone 1175536 14481127 APECO78_05730 Escherichia coli APEC O78 periplasmic folding chaperone YP_007380325.1 1173665 D 1274814 CDS YP_007380326.1 443616470 14481128 1175687..1176058 1 NC_020163.1 COG1555 DNA uptake protein and related DNA-binding proteins; hypothetical protein 1176058 14481128 APECO78_05735 Escherichia coli APEC O78 hypothetical protein YP_007380326.1 1175687 D 1274814 CDS YP_007380327.1 443616471 14481129 1176152..1176550 1 NC_020163.1 COG0824 Predicted thioesterase; thioesterase superfamily protein 1176550 14481129 APECO78_05740 Escherichia coli APEC O78 thioesterase superfamily protein YP_007380327.1 1176152 D 1274814 CDS YP_007380328.1 443616472 14481130 complement(1176602..1177297) 1 NC_020163.1 COG0603 Predicted PP-loop superfamily ATPase; queuosine biosynthesis protein QueC 1177297 14481130 APECO78_05745 Escherichia coli APEC O78 queuosine biosynthesis protein QueC YP_007380328.1 1176602 R 1274814 CDS YP_007380329.1 443616473 14481131 complement(1177362..1179062) 1 NC_020163.1 COG4533 ABC-type uncharacterized transport system, periplasmic component; putative substrate-binding protein 1179062 14481131 APECO78_05750 Escherichia coli APEC O78 putative substrate-binding protein YP_007380329.1 1177362 R 1274814 CDS YP_007380330.1 443616474 14481132 1179162..1179980 1 NC_020163.1 COG0561 Predicted hydrolases of the HAD superfamily; cof family hydrolase 1179980 14481132 APECO78_05755 Escherichia coli APEC O78 cof family hydrolase YP_007380330.1 1179162 D 1274814 CDS YP_007380331.1 443616475 14481133 1180133..1180591 1 NC_020163.1 COG1522 Transcriptional regulators; LRP-like transcriptional regulator 1180591 14481133 APECO78_05760 Escherichia coli APEC O78 LRP-like transcriptional regulator YP_007380331.1 1180133 D 1274814 CDS YP_007380332.1 443616476 14481134 1180621..1182393 1 NC_020163.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATP-binding protein 1182393 14481134 APECO78_05765 Escherichia coli APEC O78 multidrug ABC transporter ATP-binding protein YP_007380332.1 1180621 D 1274814 CDS YP_007380333.1 443616477 14481135 1182386..1184167 1 NC_020163.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug transporter membrane\ATP-binding components 1184167 14481135 APECO78_05770 Escherichia coli APEC O78 multidrug transporter membrane\ATP-binding components YP_007380333.1 1182386 D 1274814 CDS YP_007380334.1 443616478 14481136 1184348..1184686 1 NC_020163.1 COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 2 1184686 14481136 APECO78_05775 Escherichia coli APEC O78 nitrogen regulatory protein P-II 2 YP_007380334.1 1184348 D 1274814 CDS YP_007380335.1 443616479 14481137 1184716..1186002 1 NC_020163.1 COG0004 Ammonia permease; ammonium transporter 1186002 14481137 APECO78_05780 Escherichia coli APEC O78 ammonium transporter YP_007380335.1 1184716 D 1274814 CDS YP_007380336.1 443616480 14481138 complement(1186051..1186911) 1 NC_020163.1 COG1946 Acyl-CoA thioesterase; acyl-CoA thioesterase II 1186911 14481138 APECO78_05785 Escherichia coli APEC O78 acyl-CoA thioesterase II YP_007380336.1 1186051 R 1274814 CDS YP_007380337.1 443616481 14481139 1187129..1187701 1 NC_020163.1 COG3126 Uncharacterized protein conserved in bacteria; lipoprotein 1187701 14481139 APECO78_05790 Escherichia coli APEC O78 lipoprotein YP_007380337.1 1187129 D 1274814 CDS YP_007380338.1 443616482 14481140 complement(1187732..1188121) 1 NC_020163.1 COG3695 Predicted methylated DNA-protein cysteine methyltransferase; methylated-DNA-[protein]-cysteine S-methyltransferase 1188121 14481140 APECO78_05795 Escherichia coli APEC O78 methylated-DNA-[protein]-cysteine S-methyltransferase YP_007380338.1 1187732 R 1274814 CDS YP_007380339.1 443616483 14481141 1188485..1188775 1 NC_020163.1 COG5507 Uncharacterized conserved protein; hypothetical protein 1188775 14481141 APECO78_05800 Escherichia coli APEC O78 hypothetical protein YP_007380339.1 1188485 D 1274814 CDS YP_007380340.1 443616484 14481142 complement(1188817..1190367) 1 NC_020163.1 COG4943 Predicted signal transduction protein containing sensor and EAL domains; hypothetical protein 1190367 14481142 APECO78_05805 Escherichia coli APEC O78 hypothetical protein YP_007380340.1 1188817 R 1274814 CDS YP_007380341.1 443616485 14481143 complement(1190531..1191001) 1 NC_020163.1 hypothetical protein 1191001 14481143 APECO78_05810 Escherichia coli APEC O78 hypothetical protein YP_007380341.1 1190531 R 1274814 CDS YP_007380342.1 443616486 14481144 complement(1191117..1191668) 1 NC_020163.1 COG0110 Acetyltransferase (isoleucine patch superfamily); maltose O-acetyltransferase 1191668 14481144 APECO78_05815 Escherichia coli APEC O78 maltose O-acetyltransferase YP_007380342.1 1191117 R 1274814 CDS YP_007380343.1 443616487 14481145 complement(1191840..1192058) 1 NC_020163.1 modulator of gene expression, with H-NS 1192058 14481145 APECO78_05820 Escherichia coli APEC O78 modulator of gene expression, with H-NS YP_007380343.1 1191840 R 1274814 CDS YP_007380344.1 443616488 14481146 complement(1192084..1192458) 1 NC_020163.1 Hha toxicity attenuator 1192458 14481146 APECO78_05825 Escherichia coli APEC O78 Hha toxicity attenuator YP_007380344.1 1192084 R 1274814 CDS YP_007380345.1 443616489 14481147 complement(1193004..1196153) 1 NC_020163.1 COG0841 Cation/multidrug efflux pump; multidrug efflux system protein AcrB 1196153 14481147 APECO78_05830 Escherichia coli APEC O78 multidrug efflux system protein AcrB YP_007380345.1 1193004 R 1274814 CDS YP_007380346.1 443616490 14481148 complement(1196176..1197369) 1 NC_020163.1 COG0845 Membrane-fusion protein; acriflavine resistance protein A 1197369 14481148 APECO78_05835 Escherichia coli APEC O78 acriflavine resistance protein A YP_007380346.1 1196176 R 1274814 CDS YP_007380347.1 443616491 14481149 1197511..1198158 1 NC_020163.1 COG1309 Transcriptional regulator; DNA-binding transcriptional repressor AcrR 1198158 14481149 APECO78_05840 Escherichia coli APEC O78 DNA-binding transcriptional repressor AcrR YP_007380347.1 1197511 D 1274814 CDS YP_007380348.1 443616492 14481150 1198286..1201648 1 NC_020163.1 COG3264 Small-conductance mechanosensitive channel; hypothetical protein 1201648 14481150 APECO78_05845 Escherichia coli APEC O78 hypothetical protein YP_007380348.1 1198286 D 1274814 CDS YP_007380349.1 443616493 14481151 complement(1201860..1202021) 1 NC_020163.1 hypothetical protein 1202021 14481151 APECO78_05850 Escherichia coli APEC O78 hypothetical protein YP_007380349.1 1201860 R 1274814 CDS YP_007380350.1 443616494 14481152 complement(1202035..1202562) 1 NC_020163.1 COG3923 Primosomal replication protein N''; primosomal replication protein N'' 1202562 14481152 APECO78_05855 Escherichia coli APEC O78 primosomal replication protein N'' YP_007380350.1 1202035 R 1274814 CDS YP_007380351.1 443616495 14481153 1202632..1203009 1 NC_020163.1 COG2832 Uncharacterized protein conserved in bacteria; hypothetical protein 1203009 14481153 APECO78_05860 Escherichia coli APEC O78 hypothetical protein YP_007380351.1 1202632 D 1274814 CDS YP_007380352.1 443616496 14481154 1203162..1203713 1 NC_020163.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase 1203713 14481154 APECO78_05865 Escherichia coli APEC O78 adenine phosphoribosyltransferase YP_007380352.1 1203162 D 1274814 CDS YP_007380353.1 443616497 14481155 1203842..1205773 1 NC_020163.1 COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau 1205773 14481155 APECO78_05870 Escherichia coli APEC O78 DNA polymerase III subunits gamma and tau YP_007380353.1 1203842 D 1274814 CDS YP_007380354.1 443616498 14481156 1205826..1206155 1 NC_020163.1 COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 1206155 14481156 APECO78_05875 Escherichia coli APEC O78 hypothetical protein YP_007380354.1 1205826 D 1274814 CDS YP_007380355.1 443616499 14481157 1206155..1206760 1 NC_020163.1 COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR 1206760 14481157 APECO78_05880 Escherichia coli APEC O78 recombination protein RecR YP_007380355.1 1206155 D 1274814 CDS YP_007380356.1 443616500 14481158 1206870..1208744 1 NC_020163.1 COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 1208744 14481158 APECO78_05885 Escherichia coli APEC O78 heat shock protein 90 YP_007380356.1 1206870 D 1274814 CDS YP_007380357.1 443616501 14481159 1208925..1209569 1 NC_020163.1 COG0563 Adenylate kinase and related kinases; adenylate kinase 1209569 14481159 APECO78_05890 Escherichia coli APEC O78 adenylate kinase YP_007380357.1 1208925 D 1274814 CDS YP_007380358.1 443616502 14481160 1209805..1210767 1 NC_020163.1 COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase 1210767 hemH 14481160 hemH Escherichia coli APEC O78 ferrochelatase YP_007380358.1 1209805 D 1274814 CDS YP_007380359.1 443616503 14481161 complement(1210764..1211723) 1 NC_020163.1 COG0657 Esterase/lipase; acetyl esterase 1211723 14481161 APECO78_05900 Escherichia coli APEC O78 acetyl esterase YP_007380359.1 1210764 R 1274814 CDS YP_007380360.1 443616504 14481162 1211875..1213179 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; inosine/guanosine kinase 1213179 14481162 APECO78_05905 Escherichia coli APEC O78 inosine/guanosine kinase YP_007380360.1 1211875 D 1274814 CDS YP_007380361.1 443616505 14481163 complement(1213312..1214988) 1 NC_020163.1 COG4651 Kef-type K+ transport system, predicted NAD-binding component; cation:proton antiport protein 1214988 14481163 APECO78_05910 Escherichia coli APEC O78 cation:proton antiport protein YP_007380361.1 1213312 R 1274814 CDS YP_007380362.1 443616506 14481164 complement(1215226..1216446) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; fosmidomycin efflux system protein Fsr 1216446 14481164 APECO78_05915 Escherichia coli APEC O78 fosmidomycin efflux system protein Fsr YP_007380362.1 1215226 R 1274814 CDS YP_007380363.1 443616507 14481165 1216664..1218316 1 NC_020163.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 1218316 ushA 14481165 ushA Escherichia coli APEC O78 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_007380363.1 1216664 D 1274814 CDS YP_007380364.1 443616508 14481166 complement(1218353..1218832) 1 NC_020163.1 COG2606 Uncharacterized conserved protein; hypothetical protein 1218832 14481166 APECO78_05925 Escherichia coli APEC O78 hypothetical protein YP_007380364.1 1218353 R 1274814 CDS YP_007380365.1 443616509 14481167 complement(1219036..1219830) 1 NC_020163.1 COG3735 Uncharacterized protein conserved in bacteria; hypothetical protein 1219830 14481167 APECO78_05930 Escherichia coli APEC O78 hypothetical protein YP_007380365.1 1219036 R 1274814 CDS YP_007380366.1 443616510 14481168 1219968..1220309 1 NC_020163.1 COG3093 Plasmid maintenance system antidote protein; DNA-binding transcriptional regulator 1220309 14481168 APECO78_05935 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007380366.1 1219968 D 1274814 CDS YP_007380367.1 443616511 14481169 complement(1220423..1222927) 1 NC_020163.1 COG2217 Cation transport ATPase; copper exporting ATPase 1222927 copA 14481169 copA Escherichia coli APEC O78 copper exporting ATPase YP_007380367.1 1220423 R 1274814 CDS YP_007380368.1 443616512 14481170 1223189..1224121 1 NC_020163.1 COG2066 Glutaminase; glutaminase 1224121 14481170 APECO78_05945 Escherichia coli APEC O78 glutaminase YP_007380368.1 1223189 D 1274814 CDS YP_007380369.1 443616513 14481171 1224124..1225416 1 NC_020163.1 COG0531 Amino acid transporters; transporter 1225416 14481171 APECO78_05950 Escherichia coli APEC O78 transporter YP_007380369.1 1224124 D 1274814 CDS YP_007380370.1 443616514 14481172 1225541..1225948 1 NC_020163.1 COG0789 Predicted transcriptional regulators; DNA-binding transcriptional regulator CueR 1225948 14481172 APECO78_05955 Escherichia coli APEC O78 DNA-binding transcriptional regulator CueR YP_007380370.1 1225541 D 1274814 CDS YP_007380371.1 443616515 14481173 complement(1225949..1226407) 1 NC_020163.1 COG1585 Membrane protein implicated in regulation of membrane protease activity; nodulation efficiency family protein 1226407 14481173 APECO78_05960 Escherichia coli APEC O78 nodulation efficiency family protein YP_007380371.1 1225949 R 1274814 CDS YP_007380372.1 443616516 14481174 complement(1226404..1227321) 1 NC_020163.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; protease 1227321 14481174 APECO78_05965 Escherichia coli APEC O78 protease YP_007380372.1 1226404 R 1274814 CDS YP_007380373.1 443616517 14481175 1227467..1228144 1 NC_020163.1 COG4619 ABC-type uncharacterized transport system, ATPase component; putative ABC transporter ATP-binding protein YbbL 1228144 14481175 APECO78_05970 Escherichia coli APEC O78 putative ABC transporter ATP-binding protein YbbL YP_007380373.1 1227467 D 1274814 CDS YP_007380374.1 443616518 14481176 1228131..1228910 1 NC_020163.1 COG0390 ABC-type uncharacterized transport system, permease component; metal resistance protein 1228910 14481176 APECO78_05975 Escherichia coli APEC O78 metal resistance protein YP_007380374.1 1228131 D 1274814 CDS YP_007380375.1 443616519 14481177 complement(1228973..1229827) 1 NC_020163.1 COG3118 Thioredoxin domain-containing protein; thioredoxin-like protein 1229827 14481177 APECO78_05980 Escherichia coli APEC O78 thioredoxin-like protein YP_007380375.1 1228973 R 1274814 CDS YP_007380376.1 443616520 14481178 complement(1229888..1230658) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 1230658 14481178 APECO78_05985 Escherichia coli APEC O78 oxidoreductase YP_007380376.1 1229888 R 1274814 CDS YP_007380377.1 443616521 14481179 complement(1230687..1231313) 1 NC_020163.1 COG2755 Lysophospholipase L1 and related esterases; esterase 1231313 14481179 APECO78_05990 Escherichia coli APEC O78 esterase YP_007380377.1 1230687 R 1274814 CDS YP_007380378.1 443616522 14481180 1231281..1231967 1 NC_020163.1 COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; ABC transporter ATP-binding protein 1231967 14481180 APECO78_05995 Escherichia coli APEC O78 ABC transporter ATP-binding protein YP_007380378.1 1231281 D 1274814 CDS YP_007380379.1 443616523 14481181 1231964..1234378 1 NC_020163.1 COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component; putative inner membrane protein 1234378 14481181 APECO78_06000 Escherichia coli APEC O78 putative inner membrane protein YP_007380379.1 1231964 D 1274814 CDS YP_007380380.1 443616524 14481182 1234378..1234518 1 NC_020163.1 hypothetical protein 1234518 14481182 APECO78_06005 Escherichia coli APEC O78 hypothetical protein YP_007380380.1 1234378 D 1274814 CDS YP_007380381.1 443616525 14481183 complement(1235090..1236184) 1 NC_020163.1 COG2603 Predicted ATPase; tRNA 2-selenouridine synthase SelU 1236184 14481183 APECO78_06010 Escherichia coli APEC O78 tRNA 2-selenouridine synthase SelU YP_007380381.1 1235090 R 1274814 CDS YP_007380382.1 443616526 14481184 complement(1236253..1237179) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator AllS 1237179 14481184 APECO78_06015 Escherichia coli APEC O78 DNA-binding transcriptional activator AllS YP_007380382.1 1236253 R 1274814 CDS YP_007380383.1 443616527 14481185 1237409..1237891 1 NC_020163.1 COG3194 Ureidoglycolate hydrolase; ureidoglycolate hydrolase 1237891 14481185 APECO78_06020 Escherichia coli APEC O78 ureidoglycolate hydrolase YP_007380383.1 1237409 D 1274814 CDS YP_007380384.1 443616528 14481186 1237969..1238784 1 NC_020163.1 COG1414 Transcriptional regulator; DNA-binding transcriptional repressor AllR 1238784 14481186 APECO78_06025 Escherichia coli APEC O78 DNA-binding transcriptional repressor AllR YP_007380384.1 1237969 D 1274814 CDS YP_007380385.1 443616529 14481187 1238874..1240655 1 NC_020163.1 COG3960 Glyoxylate carboligase; glyoxylate carboligase 1240655 14481187 APECO78_06030 Escherichia coli APEC O78 glyoxylate carboligase YP_007380385.1 1238874 D 1274814 CDS YP_007380386.1 443616530 14481188 1240668..1241444 1 NC_020163.1 COG3622 Hydroxypyruvate isomerase; hydroxypyruvate isomerase 1241444 14481188 APECO78_06035 Escherichia coli APEC O78 hydroxypyruvate isomerase YP_007380386.1 1240668 D 1274814 CDS YP_007380387.1 443616531 14481189 1241544..1242422 1 NC_020163.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase 1242422 14481189 APECO78_06040 Escherichia coli APEC O78 tartronate semialdehyde reductase YP_007380387.1 1241544 D 1274814 CDS YP_007380388.1 443616532 14481190 1244105..1245466 1 NC_020163.1 COG0044 Dihydroorotase and related cyclic amidohydrolases; allantoinase 1245466 14481190 APECO78_06055 Escherichia coli APEC O78 allantoinase YP_007380388.1 1244105 D 1274814 CDS YP_007380389.1 443616533 14481191 1245523..1246824 1 NC_020163.1 COG2233 Xanthine/uracil permeases; uracil/xanthine transporter 1246824 14481191 APECO78_06060 Escherichia coli APEC O78 uracil/xanthine transporter YP_007380389.1 1245523 D 1274814 CDS YP_007380390.1 443616534 14481192 1246846..1247991 1 NC_020163.1 COG1929 Glycerate kinase; glycerate kinase 1247991 14481192 APECO78_06065 Escherichia coli APEC O78 glycerate kinase YP_007380390.1 1246846 D 1274814 CDS YP_007380391.1 443616535 14481193 complement(1248219..1249004) 1 NC_020163.1 COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization; hypothetical protein 1249004 14481193 APECO78_06070 Escherichia coli APEC O78 hypothetical protein YP_007380391.1 1248219 R 1274814 CDS YP_007380392.1 443616536 14481194 complement(1249015..1250250) 1 NC_020163.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; allantoate amidohydrolase 1250250 14481194 APECO78_06075 Escherichia coli APEC O78 allantoate amidohydrolase YP_007380392.1 1249015 R 1274814 CDS YP_007380393.1 443616537 14481195 complement(1250272..1251321) 1 NC_020163.1 COG2055 Malate/L-lactate dehydrogenases; ureidoglycolate dehydrogenase 1251321 14481195 APECO78_06080 Escherichia coli APEC O78 ureidoglycolate dehydrogenase YP_007380393.1 1250272 R 1274814 CDS YP_007380394.1 443616538 14481196 1251638..1253305 1 NC_020163.1 COG0074 Succinyl-CoA synthetase, alpha subunit; acyl-CoA synthetase 1253305 14481196 APECO78_06085 Escherichia coli APEC O78 acyl-CoA synthetase YP_007380394.1 1251638 D 1274814 CDS YP_007380395.1 443616539 14481197 1253315..1254574 1 NC_020163.1 hypothetical protein 1254574 14481197 APECO78_06090 Escherichia coli APEC O78 hypothetical protein YP_007380395.1 1253315 D 1274814 CDS YP_007380396.1 443616540 14481198 1254585..1255400 1 NC_020163.1 hypothetical protein 1255400 14481198 APECO78_06095 Escherichia coli APEC O78 hypothetical protein YP_007380396.1 1254585 D 1274814 CDS YP_007380397.1 443616541 14481199 1255397..1256290 1 NC_020163.1 COG0549 Carbamate kinase; carbamate kinase 1256290 14481199 APECO78_06100 Escherichia coli APEC O78 carbamate kinase YP_007380397.1 1255397 D 1274814 CDS YP_007380398.1 443616542 14481200 1256320..1256418 1 NC_020163.1 hypothetical protein 1256418 14481200 APECO78_06105 Escherichia coli APEC O78 hypothetical protein YP_007380398.1 1256320 D 1274814 CDS YP_007380399.1 443616543 14481201 complement(1256427..1257494) 1 NC_020163.1 COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); N5-carboxyaminoimidazole ribonucleotide synthase 1257494 14481201 APECO78_06110 Escherichia coli APEC O78 N5-carboxyaminoimidazole ribonucleotide synthase YP_007380399.1 1256427 R 1274814 CDS YP_007380400.1 443616544 14481202 complement(1257491..1258000) 1 NC_020163.1 COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1258000 14481202 APECO78_06115 Escherichia coli APEC O78 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_007380400.1 1257491 R 1274814 CDS YP_007380401.1 443616545 14481203 complement(1258118..1258840) 1 NC_020163.1 COG2908 Uncharacterized protein conserved in bacteria; UDP-2,3-diacylglucosamine hydrolase 1258840 14481203 APECO78_06120 Escherichia coli APEC O78 UDP-2,3-diacylglucosamine hydrolase YP_007380401.1 1258118 R 1274814 CDS YP_007380402.1 443616546 14481204 complement(1258843..1259337) 1 NC_020163.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B 1259337 14481204 APECO78_06125 Escherichia coli APEC O78 peptidyl-prolyl cis-trans isomerase B YP_007380402.1 1258843 R 1274814 CDS YP_007380403.1 443616547 14481205 1259511..1260896 1 NC_020163.1 COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 1260896 14481205 APECO78_06130 Escherichia coli APEC O78 cysteinyl-tRNA synthetase YP_007380403.1 1259511 D 1274814 CDS YP_007380404.1 443616548 14481206 complement(1260932..1261453) 1 NC_020163.1 COG1988 Predicted membrane-bound metal-dependent hydrolases; membrane-bound metal-dependent hydrolase 1261453 14481206 APECO78_06135 Escherichia coli APEC O78 membrane-bound metal-dependent hydrolase YP_007380404.1 1260932 R 1274814 CDS YP_007380405.1 443616549 14481207 complement(1261561..1261773) 1 NC_020163.1 COG2501 Uncharacterized conserved protein; hypothetical protein 1261773 14481207 APECO78_06140 Escherichia coli APEC O78 hypothetical protein YP_007380405.1 1261561 R 1274814 CDS YP_007380406.1 443616550 14481208 complement(1261775..1262641) 1 NC_020163.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5,10-methylene-tetrahydrofolatedehydrogenase/ 5,10-methylene-tetrahydrofolatecyclohydrolase 1262641 14481208 APECO78_06145 Escherichia coli APEC O78 bifunctional 5,10-methylene-tetrahydrofolatedehydrogenase/ 5,10-methylene-tetrahydrofolatecyclohydrolase YP_007380406.1 1261775 R 1274814 CDS YP_007380407.1 443616551 14481209 1263112..1263654 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein 1263654 14481209 APECO78_06150 Escherichia coli APEC O78 fimbrial-like protein YP_007380407.1 1263112 D 1274814 CDS YP_007380408.1 443616552 14481210 1263874..1264566 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein FimC 1264566 14481210 APECO78_06155 Escherichia coli APEC O78 fimbrial chaperone protein FimC YP_007380408.1 1263874 D 1274814 CDS YP_007380409.1 443616553 14481211 1264795..1267059 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; outer membrane export usher protein SfmD 1267059 14481211 APECO78_06160 Escherichia coli APEC O78 outer membrane export usher protein SfmD YP_007380409.1 1264795 D 1274814 CDS YP_007380410.1 443616554 14481212 1267032..1267205 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein FimD 1267205 14481212 APECO78_06165 Escherichia coli APEC O78 outer membrane usher protein FimD YP_007380410.1 1267032 D 1274814 CDS YP_007380411.1 443616555 14481213 1267218..1268225 1 NC_020163.1 fimbrial-like adhesin 1268225 fimH 14481213 fimH Escherichia coli APEC O78 fimbrial-like adhesin YP_007380411.1 1267218 D 1274814 CDS YP_007380412.1 443616556 14481214 1268236..1268751 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial-like adhesin protein 1268751 14481214 APECO78_06175 Escherichia coli APEC O78 fimbrial-like adhesin protein YP_007380412.1 1268236 D 1274814 CDS YP_007380413.1 443616557 14481215 complement(1268754..1269386) 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator FimZ 1269386 14481215 APECO78_06180 Escherichia coli APEC O78 transcriptional regulator FimZ YP_007380413.1 1268754 R 1274814 CDS YP_007380414.1 443616558 14484599 complement(1269721..1270884) 1 NC_020163.1 COG0582 Integrase; site-specific recombinase, phage integrase family protein 1270884 14484599 APECO78_06185 Escherichia coli APEC O78 site-specific recombinase, phage integrase family protein YP_007380414.1 1269721 R 1274814 CDS YP_007380415.1 443616559 14481217 complement(1271111..1271416) 1 NC_020163.1 hypothetical protein 1271416 14481217 APECO78_06190 Escherichia coli APEC O78 hypothetical protein YP_007380415.1 1271111 R 1274814 CDS YP_007380416.1 443616560 14481218 complement(1271416..1271778) 1 NC_020163.1 hypothetical protein 1271778 14481218 APECO78_06195 Escherichia coli APEC O78 hypothetical protein YP_007380416.1 1271416 R 1274814 CDS YP_007380417.1 443616561 14481219 complement(1271769..1272305) 1 NC_020163.1 COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 1272305 14481219 APECO78_06200 Escherichia coli APEC O78 hypothetical protein YP_007380417.1 1271769 R 1274814 CDS YP_007380418.1 443616562 14481220 complement(1272433..1273257) 1 NC_020163.1 COG5532 Uncharacterized conserved protein; hypothetical protein 1273257 14481220 APECO78_06205 Escherichia coli APEC O78 hypothetical protein YP_007380418.1 1272433 R 1274814 CDS YP_007380419.1 443616563 14481221 complement(1273322..1273684) 1 NC_020163.1 hypothetical protein 1273684 14481221 APECO78_06210 Escherichia coli APEC O78 hypothetical protein YP_007380419.1 1273322 R 1274814 CDS YP_007380420.1 443616564 14481222 complement(1273782..1274327) 1 NC_020163.1 COG4220 Phage DNA packaging protein, Nu1 subunit of terminase; DNA packaging Nu1 1274327 14481222 APECO78_06215 Escherichia coli APEC O78 DNA packaging Nu1 YP_007380420.1 1273782 R 1274814 CDS YP_007380421.1 443616565 14481223 complement(1274892..1275074) 1 NC_020163.1 hypothetical protein 1275074 14481223 APECO78_06220 Escherichia coli APEC O78 hypothetical protein YP_007380421.1 1274892 R 1274814 CDS YP_007380422.1 443616566 14481224 complement(1275281..1275607) 1 NC_020163.1 COG0810 Periplasmic protein TonB, links inner and outer membranes; tonB-like membrane protein 1275607 14481224 APECO78_06225 Escherichia coli APEC O78 tonB-like membrane protein YP_007380422.1 1275281 R 1274814 CDS YP_007380423.1 443616567 14481225 1276088..1276381 1 NC_020163.1 Iss 1276381 14481225 APECO78_06230 Escherichia coli APEC O78 Iss YP_007380423.1 1276088 D 1274814 CDS YP_007380424.1 443616568 14481226 complement(1276413..1276874) 1 NC_020163.1 bacteriophage lysis protein 1276874 14481226 APECO78_06235 Escherichia coli APEC O78 bacteriophage lysis protein YP_007380424.1 1276413 R 1274814 CDS YP_007380425.1 443616569 14481227 complement(1276871..1277404) 1 NC_020163.1 COG3772 Phage-related lysozyme (muraminidase); Qin prophage lysozyme 1277404 14481227 APECO78_06240 Escherichia coli APEC O78 Qin prophage lysozyme YP_007380425.1 1276871 R 1274814 CDS YP_007380426.1 443616570 14481228 complement(1277748..1278092) 1 NC_020163.1 hypothetical protein 1278092 14481228 APECO78_06245 Escherichia coli APEC O78 hypothetical protein YP_007380426.1 1277748 R 1274814 CDS YP_007380427.1 443616571 14481229 complement(1278097..1278312) 1 NC_020163.1 hypothetical protein 1278312 14481229 APECO78_06250 Escherichia coli APEC O78 hypothetical protein YP_007380427.1 1278097 R 1274814 CDS YP_007380428.1 443616572 14481230 complement(1278335..1278463) 1 NC_020163.1 hypothetical protein 1278463 14481230 APECO78_06255 Escherichia coli APEC O78 hypothetical protein YP_007380428.1 1278335 R 1274814 CDS YP_007380429.1 443616573 14481231 1278854..1279048 1 NC_020163.1 hypothetical protein 1279048 14481231 APECO78_06260 Escherichia coli APEC O78 hypothetical protein YP_007380429.1 1278854 D 1274814 CDS YP_007380430.1 443616574 14481232 complement(1279406..1280497) 1 NC_020163.1 COG0863 DNA modification methylase; DNA methylase 1280497 14481232 APECO78_06265 Escherichia coli APEC O78 DNA methylase YP_007380430.1 1279406 R 1274814 CDS YP_007380431.1 443616575 14481233 complement(1280617..1280820) 1 NC_020163.1 hypothetical protein 1280820 14481233 APECO78_06270 Escherichia coli APEC O78 hypothetical protein YP_007380431.1 1280617 R 1274814 CDS YP_007380432.1 443616576 14481234 1281140..1282159 1 NC_020163.1 hypothetical protein 1282159 14481234 APECO78_06275 Escherichia coli APEC O78 hypothetical protein YP_007380432.1 1281140 D 1274814 CDS YP_007380433.1 443616577 14481235 complement(1282174..1282551) 1 NC_020163.1 antitermination protein Q from phage origin 1282551 14481235 APECO78_06280 Escherichia coli APEC O78 antitermination protein Q from phage origin YP_007380433.1 1282174 R 1274814 CDS YP_007380434.1 443616578 14481236 complement(1282569..1283564) 1 NC_020163.1 hypothetical protein 1283564 14481236 APECO78_06285 Escherichia coli APEC O78 hypothetical protein YP_007380434.1 1282569 R 1274814 CDS YP_007380435.1 443616579 14481237 complement(1283566..1284363) 1 NC_020163.1 hypothetical protein 1284363 14481237 APECO78_06290 Escherichia coli APEC O78 hypothetical protein YP_007380435.1 1283566 R 1274814 CDS YP_007380436.1 443616580 14481238 complement(1284383..1284772) 1 NC_020163.1 COG4570 Holliday junction resolvase; crossover junction endodeoxyribonuclease (holliday junction resolvase) 1284772 14481238 APECO78_06295 Escherichia coli APEC O78 crossover junction endodeoxyribonuclease (holliday junction resolvase) YP_007380436.1 1284383 R 1274814 CDS YP_007380437.1 443616581 14481239 complement(1284769..1285095) 1 NC_020163.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein 1285095 14481239 APECO78_06300 Escherichia coli APEC O78 hypothetical protein YP_007380437.1 1284769 R 1274814 CDS YP_007380438.1 443616582 14481240 complement(1285092..1285745) 1 NC_020163.1 phage AdoMet-dependent methyltransferase 1285745 14481240 APECO78_06305 Escherichia coli APEC O78 phage AdoMet-dependent methyltransferase YP_007380438.1 1285092 R 1274814 CDS YP_007380439.1 443616583 14481241 complement(1285745..1286239) 1 NC_020163.1 hypothetical protein 1286239 14481241 APECO78_06310 Escherichia coli APEC O78 hypothetical protein YP_007380439.1 1285745 R 1274814 CDS YP_007380440.1 443616584 14481242 complement(1286236..1287009) 1 NC_020163.1 phage replication protein O 1287009 14481242 APECO78_06315 Escherichia coli APEC O78 phage replication protein O YP_007380440.1 1286236 R 1274814 CDS YP_007380441.1 443616585 14481243 1287019..1287345 1 NC_020163.1 putative outer membrane protein Lom precursor 1287345 14481243 APECO78_06320 Escherichia coli APEC O78 putative outer membrane protein Lom precursor YP_007380441.1 1287019 D 1274814 CDS YP_007380442.1 443616586 14481244 1287410..1291012 1 NC_020163.1 hypothetical protein 1291012 14481244 APECO78_06325 Escherichia coli APEC O78 hypothetical protein YP_007380442.1 1287410 D 1274814 CDS YP_007380443.1 443616587 14481245 1291097..1291186 1 NC_020163.1 Tail fiber assembly protein from lambdoid prophage Qin 1291186 14481245 APECO78_06330 Escherichia coli APEC O78 Tail fiber assembly protein from lambdoid prophage Qin YP_007380443.1 1291097 D 1274814 CDS YP_007380444.1 443616588 14481246 complement(1291284..1291874) 1 NC_020163.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; Site-specific recombinase resolvase family protein PinR 1291874 14481246 APECO78_06335 Escherichia coli APEC O78 Site-specific recombinase resolvase family protein PinR YP_007380444.1 1291284 R 1274814 CDS YP_007380445.1 443616589 14481247 complement(1292249..1292515) 1 NC_020163.1 hypothetical protein 1292515 14481247 APECO78_06340 Escherichia coli APEC O78 hypothetical protein YP_007380445.1 1292249 R 1274814 CDS YP_007380446.1 443616590 14481248 complement(1293030..1293686) 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; methylase 1293686 14481248 APECO78_06345 Escherichia coli APEC O78 methylase YP_007380446.1 1293030 R 1274814 CDS YP_007380447.1 443616591 14481249 1293755..1294060 1 NC_020163.1 hypothetical protein 1294060 14481249 APECO78_06350 Escherichia coli APEC O78 hypothetical protein YP_007380447.1 1293755 D 1274814 CDS YP_007380448.1 443616592 14481250 complement(1294244..1295728) 1 NC_020163.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative protease 1295728 14481250 APECO78_06355 Escherichia coli APEC O78 putative protease YP_007380448.1 1294244 R 1274814 CDS YP_007380449.1 443616593 14481251 complement(1295915..1296868) 1 NC_020163.1 COG4571 Outer membrane protease; outer membrane protease 1296868 14481251 APECO78_06360 Escherichia coli APEC O78 outer membrane protease YP_007380449.1 1295915 R 1274814 CDS YP_007380450.1 443616594 14481252 complement(1297381..1298142) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator EnvY 1298142 14481252 APECO78_06365 Escherichia coli APEC O78 DNA-binding transcriptional activator EnvY YP_007380450.1 1297381 R 1274814 CDS YP_007380451.1 443616595 14481253 complement(1298325..1299215) 1 NC_020163.1 hypothetical protein 1299215 14481253 APECO78_06370 Escherichia coli APEC O78 hypothetical protein YP_007380451.1 1298325 R 1274814 CDS YP_007380452.1 443616596 14481254 1299222..1299566 1 NC_020163.1 hypothetical protein 1299566 14481254 APECO78_06375 Escherichia coli APEC O78 hypothetical protein YP_007380452.1 1299222 D 1274814 CDS YP_007380453.1 443616597 14481255 complement(1299579..1302188) 1 NC_020163.1 COG0457 FOG: TPR repeat; bacteriophage N4 receptor, outer membrane subunit 1302188 14481255 APECO78_06380 Escherichia coli APEC O78 bacteriophage N4 receptor, outer membrane subunit YP_007380453.1 1299579 R 1274814 CDS YP_007380454.1 443616598 14481256 complement(1302175..1304412) 1 NC_020163.1 COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; bacteriophage N4 adsorption protein B 1304412 nfrB 14481256 nfrB Escherichia coli APEC O78 bacteriophage N4 adsorption protein B YP_007380454.1 1302175 R 1274814 CDS YP_007380455.1 443616599 14481257 complement(1304681..1305817) 1 NC_020163.1 COG5433 Transposase; putative H repeat-associated protein 1305817 14481257 APECO78_06390 Escherichia coli APEC O78 putative H repeat-associated protein YP_007380455.1 1304681 R 1274814 CDS YP_007380456.1 443616600 14481258 complement(1305921..1306232) 1 NC_020163.1 hypothetical protein 1306232 14481258 APECO78_06395 Escherichia coli APEC O78 hypothetical protein YP_007380456.1 1305921 R 1274814 CDS YP_007380457.1 443616601 14481259 complement(1306347..1306598) 1 NC_020163.1 hypothetical protein 1306598 14481259 APECO78_06400 Escherichia coli APEC O78 hypothetical protein YP_007380457.1 1306347 R 1274814 CDS YP_007380458.1 443616602 14481260 complement(1306595..1307929) 1 NC_020163.1 COG3209 Rhs family protein; Rhs core protein with extension 1307929 14481260 APECO78_06405 Escherichia coli APEC O78 Rhs core protein with extension YP_007380458.1 1306595 R 1274814 CDS YP_007380459.1 443616603 14481261 complement(1309361..1311457) 1 NC_020163.1 COG3209 Rhs family protein; Rhs core protein 1311457 14481261 APECO78_06410 Escherichia coli APEC O78 Rhs core protein YP_007380459.1 1309361 R 1274814 CDS YP_007380460.1 443616604 14481262 complement(1311477..1311938) 1 NC_020163.1 COG5435 Uncharacterized conserved protein; hypothetical protein 1311938 14481262 APECO78_06415 Escherichia coli APEC O78 hypothetical protein YP_007380460.1 1311477 R 1274814 CDS YP_007380461.1 443616605 14481263 complement(1311966..1313867) 1 NC_020163.1 COG3501 Uncharacterized protein conserved in bacteria; Vgr protein 1313867 14481263 APECO78_06420 Escherichia coli APEC O78 Vgr protein YP_007380461.1 1311966 R 1274814 CDS YP_007380462.1 443616606 14481264 complement(1314604..1316052) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; sensor kinase CusS 1316052 14481264 APECO78_06425 Escherichia coli APEC O78 sensor kinase CusS YP_007380462.1 1314604 R 1274814 CDS YP_007380463.1 443616607 14481265 complement(1316042..1316725) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional activator CusR 1316725 14481265 APECO78_06430 Escherichia coli APEC O78 DNA-binding transcriptional activator CusR YP_007380463.1 1316042 R 1274814 CDS YP_007380464.1 443616608 14481266 1316882..1318264 1 NC_020163.1 COG1538 Outer membrane protein; copper/silver efflux system outer membrane protein CusC 1318264 14481266 APECO78_06435 Escherichia coli APEC O78 copper/silver efflux system outer membrane protein CusC YP_007380464.1 1316882 D 1274814 CDS YP_007380465.1 443616609 14481267 1318288..1318620 1 NC_020163.1 COG5569 Uncharacterized conserved protein; copper-binding protein 1318620 14481267 APECO78_06440 Escherichia coli APEC O78 copper-binding protein YP_007380465.1 1318288 D 1274814 CDS YP_007380466.1 443616610 14481268 1318636..1319859 1 NC_020163.1 COG0845 Membrane-fusion protein; copper/silver efflux system membrane fusionprotein CusB 1319859 14481268 APECO78_06445 Escherichia coli APEC O78 copper/silver efflux system membrane fusionprotein CusB YP_007380466.1 1318636 D 1274814 CDS YP_007380467.1 443616611 14481269 1319871..1323014 1 NC_020163.1 COG3696 Putative silver efflux pump; copper/silver efflux system, membrane component 1323014 14481269 APECO78_06450 Escherichia coli APEC O78 copper/silver efflux system, membrane component YP_007380467.1 1319871 D 1274814 CDS YP_007380468.1 443616612 14481270 1323116..1324492 1 NC_020163.1 COG1113 Gamma-aminobutyrate permease and related permeases; phenylalanine transporter 1324492 14481270 APECO78_06455 Escherichia coli APEC O78 phenylalanine transporter YP_007380468.1 1323116 D 1274814 CDS YP_007380469.1 443616613 14481271 complement(1324560..1325807) 1 NC_020163.1 COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel 1325807 14481271 APECO78_06460 Escherichia coli APEC O78 mechanosensitive channel YP_007380469.1 1324560 R 1274814 CDS YP_007380470.1 443616614 14481272 complement(1325915..1326568) 1 NC_020163.1 COG0778 Nitroreductase; dihydropteridine reductase 1326568 14481272 APECO78_06465 Escherichia coli APEC O78 dihydropteridine reductase YP_007380470.1 1325915 R 1274814 CDS YP_007380471.1 443616615 14481273 complement(1326662..1327030) 1 NC_020163.1 COG2315 Uncharacterized protein conserved in bacteria; hypothetical protein 1327030 14481273 APECO78_06470 Escherichia coli APEC O78 hypothetical protein YP_007380471.1 1326662 R 1274814 CDS YP_007380472.1 443616616 14481274 complement(1327095..1327343) 1 NC_020163.1 inner membrane protein 1327343 14481274 APECO78_06475 Escherichia coli APEC O78 inner membrane protein YP_007380472.1 1327095 R 1274814 CDS YP_007380473.1 443616617 14481275 complement(1327409..1328527) 1 NC_020163.1 COG2170 Uncharacterized conserved protein; carboxylate-amine ligase 1328527 14481275 APECO78_06480 Escherichia coli APEC O78 carboxylate-amine ligase YP_007380473.1 1327409 R 1274814 CDS YP_007380474.1 443616618 14481276 1328980..1329132 1 NC_020163.1 hypothetical protein 1329132 14481276 APECO78_06485 Escherichia coli APEC O78 hypothetical protein YP_007380474.1 1328980 D 1274814 CDS YP_007380475.1 443616619 14481277 complement(1329254..1329883) 1 NC_020163.1 COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; 4'-phosphopantetheinyl transferase 1329883 14481277 APECO78_06490 Escherichia coli APEC O78 4'-phosphopantetheinyl transferase YP_007380475.1 1329254 R 1274814 CDS YP_007380476.1 443616620 14481278 complement(1330049..1332289) 1 NC_020163.1 COG4771 Outer membrane receptor for ferrienterochelin and colicins; outer membrane receptor FepA 1332289 14481278 APECO78_06495 Escherichia coli APEC O78 outer membrane receptor FepA YP_007380476.1 1330049 R 1274814 CDS YP_007380477.1 443616621 14481279 1332610..1333734 1 NC_020163.1 COG2382 Enterochelin esterase and related enzymes; enterobactin/ferric enterobactin esterase 1333734 14481279 APECO78_06500 Escherichia coli APEC O78 enterobactin/ferric enterobactin esterase YP_007380477.1 1332610 D 1274814 CDS YP_007380478.1 443616622 14481280 1333737..1333955 1 NC_020163.1 COG3251 Uncharacterized protein conserved in bacteria; hypothetical protein 1333955 14481280 APECO78_06505 Escherichia coli APEC O78 hypothetical protein YP_007380478.1 1333737 D 1274814 CDS YP_007380479.1 443616623 14481281 1333952..1337833 1 NC_020163.1 COG1020 Non-ribosomal peptide synthetase modules and related proteins; enterobactin synthase subunit F 1337833 entF 14481281 entF Escherichia coli APEC O78 enterobactin synthase subunit F YP_007380479.1 1333952 D 1274814 CDS YP_007380480.1 443616624 14481282 1338048..1339181 1 NC_020163.1 COG3765 Chain length determinant protein; LPS O-antigen length regulator 1339181 14481282 APECO78_06515 Escherichia coli APEC O78 LPS O-antigen length regulator YP_007380480.1 1338048 D 1274814 CDS YP_007380481.1 443616625 14481283 complement(1339178..1339993) 1 NC_020163.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; Ferric enterobactin transport ATP-binding protein 1339993 14481283 APECO78_06520 Escherichia coli APEC O78 Ferric enterobactin transport ATP-binding protein YP_007380481.1 1339178 R 1274814 CDS YP_007380482.1 443616626 14481284 complement(1339990..1340982) 1 NC_020163.1 COG4779 ABC-type enterobactin transport system, permease component; iron-enterobactin transporter permease 1340982 14481284 APECO78_06525 Escherichia coli APEC O78 iron-enterobactin transporter permease YP_007380482.1 1339990 R 1274814 CDS YP_007380483.1 443616627 14481285 complement(1340979..1341983) 1 NC_020163.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron-enterobactin transporter membrane protein 1341983 14481285 APECO78_06530 Escherichia coli APEC O78 iron-enterobactin transporter membrane protein YP_007380483.1 1340979 R 1274814 CDS YP_007380484.1 443616628 14481286 1342094..1343344 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; enterobactin exporter EntS 1343344 14481286 APECO78_06535 Escherichia coli APEC O78 enterobactin exporter EntS YP_007380484.1 1342094 D 1274814 CDS YP_007380485.1 443616629 14481287 complement(1343348..1344304) 1 NC_020163.1 COG4592 ABC-type Fe2+-enterobactin transport system, periplasmic component; iron-enterobactin transporter periplasmic binding protein 1344304 14481287 APECO78_06540 Escherichia coli APEC O78 iron-enterobactin transporter periplasmic binding protein YP_007380485.1 1343348 R 1274814 CDS YP_007380486.1 443616630 14481288 1344679..1345854 1 NC_020163.1 COG1169 Isochorismate synthase; isochorismate synthase EntC 1345854 14481288 APECO78_06545 Escherichia coli APEC O78 isochorismate synthase EntC YP_007380486.1 1344679 D 1274814 CDS YP_007380487.1 443616631 14481289 1345864..1347474 1 NC_020163.1 COG1021 Peptide arylation enzymes; enterobactin synthase subunit E 1347474 entE 14481289 entE Escherichia coli APEC O78 enterobactin synthase subunit E YP_007380487.1 1345864 D 1274814 CDS YP_007380488.1 443616632 14481290 1347488..1348345 1 NC_020163.1 COG1535 Isochorismate hydrolase; isochorismatase 1348345 14481290 APECO78_06555 Escherichia coli APEC O78 isochorismatase YP_007380488.1 1347488 D 1274814 CDS YP_007380489.1 443616633 14481291 1348345..1349091 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2,3-dihydroxybenzoate-2,3-dehydrogenase 1349091 14481291 APECO78_06560 Escherichia coli APEC O78 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_007380489.1 1348345 D 1274814 CDS YP_007380490.1 443616634 14481292 1349094..1349507 1 NC_020163.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; thioesterase 1349507 14481292 APECO78_06565 Escherichia coli APEC O78 thioesterase YP_007380490.1 1349094 D 1274814 CDS YP_007380491.1 443616635 14481293 1349688..1351793 1 NC_020163.1 COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein A 1351793 14481293 APECO78_06570 Escherichia coli APEC O78 carbon starvation protein A YP_007380491.1 1349688 D 1274814 CDS YP_007380492.1 443616636 14481294 1351975..1352172 1 NC_020163.1 COG2879 Uncharacterized small protein; hypothetical protein 1352172 14481294 APECO78_06575 Escherichia coli APEC O78 hypothetical protein YP_007380492.1 1351975 D 1274814 CDS YP_007380493.1 443616637 14481295 complement(1352182..1353270) 1 NC_020163.1 COG0371 Glycerol dehydrogenase and related enzymes; oxidoreductase 1353270 14481295 APECO78_06580 Escherichia coli APEC O78 oxidoreductase YP_007380493.1 1352182 R 1274814 CDS YP_007380494.1 443616638 14481296 1353379..1354539 1 NC_020163.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; methionine aminotransferase 1354539 14481296 APECO78_06585 Escherichia coli APEC O78 methionine aminotransferase YP_007380494.1 1353379 D 1274814 CDS YP_007380495.1 443616639 14481297 complement(1354540..1355157) 1 NC_020163.1 COG1475 Predicted transcriptional regulators; hypothetical protein 1355157 14481297 APECO78_06590 Escherichia coli APEC O78 hypothetical protein YP_007380495.1 1354540 R 1274814 CDS YP_007380496.1 443616640 14481298 complement(1355142..1356362) 1 NC_020163.1 COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase; hypothetical protein 1356362 14481298 APECO78_06595 Escherichia coli APEC O78 hypothetical protein YP_007380496.1 1355142 R 1274814 CDS YP_007380497.1 443616641 14481299 complement(1356510..1357412) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 1357412 14481299 APECO78_06600 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007380497.1 1356510 R 1274814 CDS YP_007380498.1 443616642 14481300 complement(1357621..1358367) 1 NC_020163.1 COG1651 Protein-disulfide isomerase; disulfide isomerase/thiol-disulfide oxidase 1358367 dsbG 14481300 dsbG Escherichia coli APEC O78 disulfide isomerase/thiol-disulfide oxidase YP_007380498.1 1357621 R 1274814 CDS YP_007380499.1 443616643 14481301 1358738..1359301 1 NC_020163.1 COG0450 Peroxiredoxin; alkyl hydroperoxide reductase subunit C 1359301 14481301 APECO78_06610 Escherichia coli APEC O78 alkyl hydroperoxide reductase subunit C YP_007380499.1 1358738 D 1274814 CDS YP_007380500.1 443616644 14481302 1359472..1361037 1 NC_020163.1 COG3634 Alkyl hydroperoxide reductase, large subunit; alkyl hydroperoxide reductase subunit F 1361037 14481302 APECO78_06615 Escherichia coli APEC O78 alkyl hydroperoxide reductase subunit F YP_007380500.1 1359472 D 1274814 CDS YP_007380501.1 443616645 14481303 complement(1361158..1361586) 1 NC_020163.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspG 1361586 14481303 APECO78_06620 Escherichia coli APEC O78 universal stress protein UspG YP_007380501.1 1361158 R 1274814 CDS YP_007380502.1 443616646 14481304 1361807..1363045 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; putative oxidoreductase, Zn-dependent and NAD(P)-binding protein 1363045 14481304 APECO78_06625 Escherichia coli APEC O78 putative oxidoreductase, Zn-dependent and NAD(P)-binding protein YP_007380502.1 1361807 D 1274814 CDS YP_007380503.1 443616647 14481305 complement(1363276..1363686) 1 NC_020163.1 COG0782 Transcription elongation factor; nucleoside diphosphate kinase regulator 1363686 14481305 APECO78_06630 Escherichia coli APEC O78 nucleoside diphosphate kinase regulator YP_007380503.1 1363276 R 1274814 CDS YP_007380504.1 443616648 14481306 complement(1363916..1364722) 1 NC_020163.1 COG3719 Ribonuclease I; ribonuclease I 1364722 14481306 APECO78_06635 Escherichia coli APEC O78 ribonuclease I YP_007380504.1 1363916 R 1274814 CDS YP_007380505.1 443616649 14481307 complement(1364836..1366299) 1 NC_020163.1 COG0471 Di- and tricarboxylate transporters; citrate/succinate antiporter CitT 1366299 14481307 APECO78_06640 Escherichia coli APEC O78 citrate/succinate antiporter CitT YP_007380505.1 1364836 R 1274814 CDS YP_007380506.1 443616650 14481308 complement(1366350..1367228) 1 NC_020163.1 COG1767 Triphosphoribosyl-dephospho-CoA synthetase; triphosphoribosyl-dephospho-CoA synthase 1367228 14481308 APECO78_06645 Escherichia coli APEC O78 triphosphoribosyl-dephospho-CoA synthase YP_007380506.1 1366350 R 1274814 CDS YP_007380507.1 443616651 14481309 complement(1367203..1367754) 1 NC_020163.1 COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase); 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 1367754 14481309 APECO78_06650 Escherichia coli APEC O78 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase YP_007380507.1 1367203 R 1274814 CDS YP_007380508.1 443616652 14481310 complement(1367758..1369290) 1 NC_020163.1 COG3051 Citrate lyase, alpha subunit; citrate lyase subunit alpha 1369290 14481310 APECO78_06655 Escherichia coli APEC O78 citrate lyase subunit alpha YP_007380508.1 1367758 R 1274814 CDS YP_007380509.1 443616653 14481311 complement(1369301..1370209) 1 NC_020163.1 COG2301 Citrate lyase beta subunit; citrate lyase beta subunit 1370209 14481311 APECO78_06660 Escherichia coli APEC O78 citrate lyase beta subunit YP_007380509.1 1369301 R 1274814 CDS YP_007380510.1 443616654 14481312 complement(1370206..1370502) 1 NC_020163.1 COG3052 Citrate lyase, gamma subunit; citrate lyase subunit gamma 1370502 14481312 APECO78_06665 Escherichia coli APEC O78 citrate lyase subunit gamma YP_007380510.1 1370206 R 1274814 CDS YP_007380511.1 443616655 14481313 complement(1370517..1371575) 1 NC_020163.1 COG3053 Citrate lyase synthetase; [citrate [pro-3S]-lyase] ligase 1371575 14481313 APECO78_06670 Escherichia coli APEC O78 [citrate [pro-3S]-lyase] ligase YP_007380511.1 1370517 R 1274814 CDS YP_007380512.1 443616656 14481314 1371955..1373613 1 NC_020163.1 COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; sensor histidine kinase DpiB 1373613 dpiB 14481314 dpiB Escherichia coli APEC O78 sensor histidine kinase DpiB YP_007380512.1 1371955 D 1274814 CDS YP_007380513.1 443616657 14481315 1373582..1374262 1 NC_020163.1 COG4565 Response regulator of citrate/malate metabolism; two-component response regulator DpiA 1374262 14481315 APECO78_06680 Escherichia coli APEC O78 two-component response regulator DpiA YP_007380513.1 1373582 D 1274814 CDS YP_007380514.1 443616658 14481316 complement(1374303..1375688) 1 NC_020163.1 COG3069 C4-dicarboxylate transporter; C4-dicarboxylate transporter DcuC 1375688 14481316 APECO78_06685 Escherichia coli APEC O78 C4-dicarboxylate transporter DcuC YP_007380514.1 1374303 R 1274814 CDS YP_007380515.1 443616659 14481317 1376277..1376837 1 NC_020163.1 phospholipid:lipid A palmitoyltransferase 1376837 14481317 APECO78_06690 Escherichia coli APEC O78 phospholipid:lipid A palmitoyltransferase YP_007380515.1 1376277 D 1274814 CDS YP_007380516.1 443616660 14481318 1377012..1377221 1 NC_020163.1 COG1278 Cold shock proteins; cold shock protein CspE 1377221 14481318 APECO78_06695 Escherichia coli APEC O78 cold shock protein CspE YP_007380516.1 1377012 D 1274814 CDS YP_007380517.1 443616661 14481319 complement(1377275..1377658) 1 NC_020163.1 COG0239 Integral membrane protein possibly involved in chromosome condensation; chromosome condensation membrane protein 1377658 14481319 APECO78_06700 Escherichia coli APEC O78 chromosome condensation membrane protein YP_007380517.1 1377275 R 1274814 CDS YP_007380518.1 443616662 14481320 1377751..1378539 1 NC_020163.1 COG0388 Predicted amidohydrolase; hypothetical protein 1378539 14481320 APECO78_06705 Escherichia coli APEC O78 hypothetical protein YP_007380518.1 1377751 D 1274814 CDS YP_007380519.1 443616663 14481321 1378668..1378871 1 NC_020163.1 COG1826 Sec-independent protein secretion pathway components; twin arginine translocase protein E 1378871 tatE 14481321 tatE Escherichia coli APEC O78 twin arginine translocase protein E YP_007380519.1 1378668 D 1274814 CDS YP_007380520.1 443616664 14481322 complement(1378972..1379937) 1 NC_020163.1 COG0320 Lipoate synthase; lipoyl synthase 1379937 14481322 APECO78_06715 Escherichia coli APEC O78 lipoyl synthase YP_007380520.1 1378972 R 1274814 CDS YP_007380521.1 443616665 14481323 complement(1380146..1381099) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 1381099 14481323 APECO78_06720 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007380521.1 1380146 R 1274814 CDS YP_007380522.1 443616666 14481324 1381157..1381306 1 NC_020163.1 COG0474 Cation transport ATPase; hypothetical protein 1381306 14481324 APECO78_06725 Escherichia coli APEC O78 hypothetical protein YP_007380522.1 1381157 D 1274814 CDS YP_007380523.1 443616667 14481325 complement(1381358..1381999) 1 NC_020163.1 COG0321 Lipoate-protein ligase B; lipoate-protein ligase B 1381999 14481325 APECO78_06730 Escherichia coli APEC O78 lipoate-protein ligase B YP_007380523.1 1381358 R 1274814 CDS YP_007380524.1 443616668 14481326 complement(1382100..1382363) 1 NC_020163.1 COG2921 Uncharacterized conserved protein; hypothetical protein 1382363 14481326 APECO78_06735 Escherichia coli APEC O78 hypothetical protein YP_007380524.1 1382100 R 1274814 CDS YP_007380525.1 443616669 14481327 complement(1382474..1383685) 1 NC_020163.1 COG1686 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 1383685 14481327 APECO78_06740 Escherichia coli APEC O78 serine-type D-Ala-D-Ala carboxypeptidase YP_007380525.1 1382474 R 1274814 CDS YP_007380526.1 443616670 14481328 complement(1383825..1384913) 1 NC_020163.1 COG0797 Lipoproteins; rare lipoprotein A 1384913 14481328 APECO78_06745 Escherichia coli APEC O78 rare lipoprotein A YP_007380526.1 1383825 R 1274814 CDS YP_007380527.1 443616671 14481329 complement(1384924..1385979) 1 NC_020163.1 COG0772 Bacterial cell division membrane protein; Rod shape-determining protein rodA 1385979 14481329 APECO78_06750 Escherichia coli APEC O78 Rod shape-determining protein rodA YP_007380527.1 1384924 R 1274814 CDS YP_007380528.1 443616672 14481330 complement(1386038..1387939) 1 NC_020163.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 1387939 14481330 APECO78_06755 Escherichia coli APEC O78 penicillin-binding protein 2 YP_007380528.1 1386038 R 1274814 CDS YP_007380529.1 443616673 14481331 complement(1387970..1388437) 1 NC_020163.1 COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase 1388437 14481331 APECO78_06760 Escherichia coli APEC O78 rRNA large subunit methyltransferase YP_007380529.1 1387970 R 1274814 CDS YP_007380530.1 443616674 14481332 complement(1388441..1388758) 1 NC_020163.1 COG0799 Uncharacterized homolog of plant Iojap protein; ribosome-associated protein 1388758 14481332 APECO78_06765 Escherichia coli APEC O78 ribosome-associated protein YP_007380530.1 1388441 R 1274814 CDS YP_007380531.1 443616675 14481333 complement(1389018..1389629) 1 NC_020163.1 COG0406 Fructose-2,6-bisphosphatase; alpha-ribazole phosphatase 1389629 14481333 APECO78_06770 Escherichia coli APEC O78 alpha-ribazole phosphatase YP_007380531.1 1389018 R 1274814 CDS YP_007380532.1 443616676 14481334 complement(1389653..1390294) 1 NC_020163.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase; nicotinic acid mononucleotide adenylyltransferase 1390294 14481334 APECO78_06775 Escherichia coli APEC O78 nicotinic acid mononucleotide adenylyltransferase YP_007380532.1 1389653 R 1274814 CDS YP_007380533.1 443616677 14481335 complement(1390296..1391327) 1 NC_020163.1 COG1466 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 1391327 holA 14481335 holA Escherichia coli APEC O78 DNA polymerase III subunit delta YP_007380533.1 1390296 R 1274814 CDS YP_007380534.1 443616678 14481336 complement(1391327..1391908) 1 NC_020163.1 COG2980 Rare lipoprotein B; LPS-assembly lipoprotein RlpB 1391908 14481336 APECO78_06785 Escherichia coli APEC O78 LPS-assembly lipoprotein RlpB YP_007380534.1 1391327 R 1274814 CDS YP_007380535.1 443616679 14481337 complement(1391923..1394505) 1 NC_020163.1 COG0495 Leucyl-tRNA synthetase; leucyl-tRNA ligase 1394505 leuS 14481337 leuS Escherichia coli APEC O78 leucyl-tRNA ligase YP_007380535.1 1391923 R 1274814 CDS YP_007380536.1 443616680 14481338 1394740..1395222 1 NC_020163.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; hypothetical protein 1395222 14481338 APECO78_06795 Escherichia coli APEC O78 hypothetical protein YP_007380536.1 1394740 D 1274814 CDS YP_007380537.1 443616681 14481339 complement(1395292..1396269) 1 NC_020163.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 1396269 14481339 APECO78_06800 Escherichia coli APEC O78 hypothetical protein YP_007380537.1 1395292 R 1274814 CDS YP_007380538.1 443616682 14481340 1396433..1397140 1 NC_020163.1 hypothetical protein 1397140 14481340 APECO78_06805 Escherichia coli APEC O78 hypothetical protein YP_007380538.1 1396433 D 1274814 CDS YP_007380539.1 443616683 14481341 1397137..1398564 1 NC_020163.1 COG2214 DnaJ-class molecular chaperone; heat shock protein DnaJ domain-containing protein 1398564 14481341 APECO78_06810 Escherichia coli APEC O78 heat shock protein DnaJ domain-containing protein YP_007380539.1 1397137 D 1274814 CDS YP_007380540.1 443616684 14481342 complement(1398574..1399128) 1 NC_020163.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 1399128 14481342 APECO78_06815 Escherichia coli APEC O78 hypothetical protein YP_007380540.1 1398574 R 1274814 CDS YP_007380541.1 443616685 14481343 1399230..1399937 1 NC_020163.1 hypothetical protein 1399937 14481343 APECO78_06820 Escherichia coli APEC O78 hypothetical protein YP_007380541.1 1399230 D 1274814 CDS YP_007380542.1 443616686 14481344 1399934..1401103 1 NC_020163.1 Hsc56 co-chaperone of HscC 1401103 14481344 APECO78_06825 Escherichia coli APEC O78 Hsc56 co-chaperone of HscC YP_007380542.1 1399934 D 1274814 CDS YP_007380543.1 443616687 14481345 1401130..1401384 1 NC_020163.1 Hsc56 co-chaperone of HscC 1401384 14481345 APECO78_06830 Escherichia coli APEC O78 Hsc56 co-chaperone of HscC YP_007380543.1 1401130 D 1274814 CDS YP_007380544.1 443616688 14481346 complement(1403198..1404133) 1 NC_020163.1 COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase 1 1404133 rihA 14481346 rihA Escherichia coli APEC O78 ribonucleoside hydrolase 1 YP_007380544.1 1403198 R 1274814 CDS YP_007380545.1 443616689 14481347 complement(1404251..1404976) 1 NC_020163.1 COG1126 ABC-type polar amino acid transport system, ATPase component; glutamate/aspartate transport ATP-binding protein gltL 1404976 14481347 APECO78_06850 Escherichia coli APEC O78 glutamate/aspartate transport ATP-binding protein gltL YP_007380545.1 1404251 R 1274814 CDS YP_007380546.1 443616690 14481348 complement(1404976..1405650) 1 NC_020163.1 COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate transport system permease GltK 1405650 14481348 APECO78_06855 Escherichia coli APEC O78 glutamate/aspartate transport system permease GltK YP_007380546.1 1404976 R 1274814 CDS YP_007380547.1 443616691 14481349 complement(1405650..1406390) 1 NC_020163.1 COG0765 ABC-type amino acid transport system, permease component; glutamate/aspartate ABC transporter permease component 1406390 14481349 APECO78_06860 Escherichia coli APEC O78 glutamate/aspartate ABC transporter permease component YP_007380547.1 1405650 R 1274814 CDS YP_007380548.1 443616692 14481350 complement(1406560..1407468) 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamate and aspartate transporter subunit 1407468 14481350 APECO78_06865 Escherichia coli APEC O78 glutamate and aspartate transporter subunit YP_007380548.1 1406560 R 1274814 CDS YP_007380549.1 443616693 14481351 1407923..1409800 1 NC_020163.1 COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); hypothetical protein 1409800 14481351 APECO78_06870 Escherichia coli APEC O78 hypothetical protein YP_007380549.1 1407923 D 1274814 CDS YP_007380550.1 443616694 14481352 complement(1409878..1411416) 1 NC_020163.1 COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 1411416 lnt 14481352 lnt Escherichia coli APEC O78 apolipoprotein N-acyltransferase YP_007380550.1 1409878 R 1274814 CDS YP_007380551.1 443616695 14481353 complement(1411441..1412319) 1 NC_020163.1 COG4535 Putative Mg2+ and Co2+ transporter CorC; magnesium/cobalt efflux protein CorC 1412319 14481353 APECO78_06880 Escherichia coli APEC O78 magnesium/cobalt efflux protein CorC YP_007380551.1 1411441 R 1274814 CDS YP_007380552.1 443616696 14481354 complement(1412409..1412876) 1 NC_020163.1 COG0319 Predicted metal-dependent hydrolase; hypothetical protein 1412876 14481354 APECO78_06885 Escherichia coli APEC O78 hypothetical protein YP_007380552.1 1412409 R 1274814 CDS YP_007380553.1 443616697 14481355 complement(1412873..1413913) 1 NC_020163.1 COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH family protein 1413913 14481355 APECO78_06890 Escherichia coli APEC O78 PhoH family protein YP_007380553.1 1412873 R 1274814 CDS YP_007380554.1 443616698 14481356 complement(1414066..1415490) 1 NC_020163.1 COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase 1415490 14481356 APECO78_06895 Escherichia coli APEC O78 (dimethylallyl)adenosine tRNA methylthiotransferase YP_007380554.1 1414066 R 1274814 CDS YP_007380555.1 443616699 14481357 1415636..1416811 1 NC_020163.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1416811 14481357 APECO78_06900 Escherichia coli APEC O78 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_007380555.1 1415636 D 1274814 CDS YP_007380556.1 443616700 14484606 complement(1418047..1419711) 1 NC_020163.1 COG0367 Asparagine synthase (glutamine-hydrolyzing); asparagine synthetase B 1419711 asnB 14484606 asnB Escherichia coli APEC O78 asparagine synthetase B YP_007380556.1 1418047 R 1274814 CDS YP_007380557.1 443616701 14481359 complement(1419912..1420082) 1 NC_020163.1 hypothetical protein 1420082 14481359 APECO78_06910 Escherichia coli APEC O78 hypothetical protein YP_007380557.1 1419912 R 1274814 CDS YP_007380558.1 443616702 14481360 complement(1420108..1420860) 1 NC_020163.1 COG0647 Predicted sugar phosphatases of the HAD superfamily; UMP phosphatase 1420860 14481360 APECO78_06915 Escherichia coli APEC O78 UMP phosphatase YP_007380558.1 1420108 R 1274814 CDS YP_007380559.1 443616703 14481361 complement(1420908..1422128) 1 NC_020163.1 COG1940 Transcriptional regulator/sugar kinase; N-acetylglucosamine repressor 1422128 14481361 APECO78_06920 Escherichia coli APEC O78 N-acetylglucosamine repressor YP_007380559.1 1420908 R 1274814 CDS YP_007380560.1 443616704 14481362 complement(1422137..1423285) 1 NC_020163.1 COG1820 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 1423285 nagA 14481362 nagA Escherichia coli APEC O78 N-acetylglucosamine-6-phosphate deacetylase YP_007380560.1 1422137 R 1274814 CDS YP_007380561.1 443616705 14481363 complement(1423345..1424145) 1 NC_020163.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; glucosamine-6-phosphate deaminase 1424145 14481363 APECO78_06930 Escherichia coli APEC O78 glucosamine-6-phosphate deaminase YP_007380561.1 1423345 R 1274814 CDS YP_007380562.1 443616706 14481364 1424478..1426424 1 NC_020163.1 COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system N-acetyl glucosamine specific transporter subunits IIABC 1426424 14481364 APECO78_06935 Escherichia coli APEC O78 PTS system N-acetyl glucosamine specific transporter subunits IIABC YP_007380562.1 1424478 D 1274814 CDS YP_007380563.1 443616707 14481365 1426692..1428356 1 NC_020163.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutaminyl-tRNA synthetase 1428356 14481365 APECO78_06940 Escherichia coli APEC O78 glutaminyl-tRNA synthetase YP_007380563.1 1426692 D 1274814 CDS YP_007380564.1 443616708 14481366 1428936..1430342 1 NC_020163.1 outer membrane porin 1430342 14481366 APECO78_06945 Escherichia coli APEC O78 outer membrane porin YP_007380564.1 1428936 D 1274814 CDS YP_007380565.1 443616709 14481367 1430392..1430718 1 NC_020163.1 hypothetical protein 1430718 14481367 APECO78_06950 Escherichia coli APEC O78 hypothetical protein YP_007380565.1 1430392 D 1274814 CDS YP_007380566.1 443616710 14481368 complement(1430803..1431249) 1 NC_020163.1 COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulator 1431249 14481368 APECO78_06955 Escherichia coli APEC O78 ferric uptake regulator YP_007380566.1 1430803 R 1274814 CDS YP_007380567.1 443616711 14481369 complement(1431242..1431328) 1 NC_020163.1 ryhB-regulated fur leader peptide 1431328 14481369 APECO78_06960 Escherichia coli APEC O78 ryhB-regulated fur leader peptide YP_007380567.1 1431242 R 1274814 CDS YP_007380568.1 443616712 14481370 complement(1431538..1432068) 1 NC_020163.1 COG0716 Flavodoxins; flavodoxin FldA 1432068 14481370 APECO78_06965 Escherichia coli APEC O78 flavodoxin FldA YP_007380568.1 1431538 R 1274814 CDS YP_007380569.1 443616713 14481371 complement(1432208..1432501) 1 NC_020163.1 LexA regulated protein 1432501 14481371 APECO78_06970 Escherichia coli APEC O78 LexA regulated protein YP_007380569.1 1432208 R 1274814 CDS YP_007380570.1 443616714 14481372 complement(1432641..1433405) 1 NC_020163.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); putative esterase/lipase 1433405 14481372 APECO78_06975 Escherichia coli APEC O78 putative esterase/lipase YP_007380570.1 1432641 R 1274814 CDS YP_007380571.1 443616715 14481373 1433590..1434135 1 NC_020163.1 COG3057 Negative regulator of replication initiationR; replication initiation regulator SeqA 1434135 14481373 APECO78_06980 Escherichia coli APEC O78 replication initiation regulator SeqA YP_007380571.1 1433590 D 1274814 CDS YP_007380572.1 443616716 14481374 1434161..1435801 1 NC_020163.1 COG0033 Phosphoglucomutase; phosphoglucomutase 1435801 14481374 APECO78_06985 Escherichia coli APEC O78 phosphoglucomutase YP_007380572.1 1434161 D 1274814 CDS YP_007380573.1 443616717 14481375 complement(1435857..1437176) 1 NC_020163.1 COG0531 Amino acid transporters; putrescine transporter 1437176 14481375 APECO78_06990 Escherichia coli APEC O78 putrescine transporter YP_007380573.1 1435857 R 1274814 CDS YP_007380574.1 443616718 14481376 complement(1437173..1439371) 1 NC_020163.1 COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 1439371 14481376 APECO78_06995 Escherichia coli APEC O78 ornithine decarboxylase YP_007380574.1 1437173 R 1274814 CDS YP_007380575.1 443616719 14481377 complement(1440061..1440738) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional activator KdpE 1440738 14481377 APECO78_07000 Escherichia coli APEC O78 DNA-binding transcriptional activator KdpE YP_007380575.1 1440061 R 1274814 CDS YP_007380576.1 443616720 14481378 complement(1440735..1443419) 1 NC_020163.1 COG2205 Osmosensitive K+ channel histidine kinase; sensor protein KdpD 1443419 14481378 APECO78_07005 Escherichia coli APEC O78 sensor protein KdpD YP_007380576.1 1440735 R 1274814 CDS YP_007380577.1 443616721 14481379 complement(1443412..1443984) 1 NC_020163.1 COG2156 K+-transporting ATPase, c chain; potassium-transporting ATPase subunit C 1443984 14481379 APECO78_07010 Escherichia coli APEC O78 potassium-transporting ATPase subunit C YP_007380577.1 1443412 R 1274814 CDS YP_007380578.1 443616722 14481380 complement(1443993..1446041) 1 NC_020163.1 COG2216 High-affinity K+ transport system, ATPase chain B; potassium-transporting ATPase subunit B 1446041 14481380 APECO78_07015 Escherichia coli APEC O78 potassium-transporting ATPase subunit B YP_007380578.1 1443993 R 1274814 CDS YP_007380579.1 443616723 14481381 complement(1446064..1447737) 1 NC_020163.1 COG2060 K+-transporting ATPase, A chain; potassium-transporting ATPase subunit A 1447737 14481381 APECO78_07020 Escherichia coli APEC O78 potassium-transporting ATPase subunit A YP_007380579.1 1446064 R 1274814 CDS YP_007380580.1 443616724 14481382 complement(1447737..1447826) 1 NC_020163.1 high-affinity potassium-transporting ATPase A chain 1447826 14481382 APECO78_07025 Escherichia coli APEC O78 high-affinity potassium-transporting ATPase A chain YP_007380580.1 1447737 R 1274814 CDS YP_007380581.1 443616725 14481383 1448139..1448345 1 NC_020163.1 hypothetical protein 1448345 14481383 APECO78_07030 Escherichia coli APEC O78 hypothetical protein YP_007380581.1 1448139 D 1274814 CDS YP_007380582.1 443616726 14481384 1448588..1452781 1 NC_020163.1 COG3209 Rhs family protein; YD repeat protein 1452781 14481384 APECO78_07035 Escherichia coli APEC O78 YD repeat protein YP_007380582.1 1448588 D 1274814 CDS YP_007380583.1 443616727 14481385 1453224..1454657 1 NC_020163.1 COG3209 Rhs family protein; RhsC core protein 1454657 14481385 APECO78_07040 Escherichia coli APEC O78 RhsC core protein YP_007380583.1 1453224 D 1274814 CDS YP_007380584.1 443616728 14481386 1454654..1455223 1 NC_020163.1 hypothetical protein 1455223 14481386 APECO78_07045 Escherichia coli APEC O78 hypothetical protein YP_007380584.1 1454654 D 1274814 CDS YP_007380585.1 443616729 14481387 1455449..1455703 1 NC_020163.1 COG5433 Transposase; transposase 1455703 14481387 APECO78_07050 Escherichia coli APEC O78 transposase YP_007380585.1 1455449 D 1274814 CDS YP_007380586.1 443616730 14481388 1455922..1456965 1 NC_020163.1 COG5433 Transposase; transposase, is4 family protein 1456965 14481388 APECO78_07055 Escherichia coli APEC O78 transposase, is4 family protein YP_007380586.1 1455922 D 1274814 CDS YP_007380587.1 443616731 14481389 1457392..1457901 1 NC_020163.1 COG3272 Uncharacterized conserved protein; hypothetical protein 1457901 14481389 APECO78_07060 Escherichia coli APEC O78 hypothetical protein YP_007380587.1 1457392 D 1274814 CDS YP_007380588.1 443616732 14481390 1457898..1459316 1 NC_020163.1 COG0415 Deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase 1459316 14481390 APECO78_07065 Escherichia coli APEC O78 deoxyribodipyrimidine photolyase YP_007380588.1 1457898 D 1274814 CDS YP_007380589.1 443616733 14481391 complement(1459358..1460839) 1 NC_020163.1 COG3104 Dipeptide/tripeptide permease; dipeptide/tripeptide permease D 1460839 14481391 APECO78_07070 Escherichia coli APEC O78 dipeptide/tripeptide permease D YP_007380589.1 1459358 R 1274814 CDS YP_007380590.1 443616734 14481392 1461110..1461853 1 NC_020163.1 COG0327 Uncharacterized conserved protein; metal-binding protein 1461853 14481392 APECO78_07075 Escherichia coli APEC O78 metal-binding protein YP_007380590.1 1461110 D 1274814 CDS YP_007380591.1 443616735 14481393 1461876..1462532 1 NC_020163.1 COG2049 Allophanate hydrolase subunit 1; carboxylase 1462532 14481393 APECO78_07080 Escherichia coli APEC O78 carboxylase YP_007380591.1 1461876 D 1274814 CDS YP_007380592.1 443616736 14481394 1462526..1463458 1 NC_020163.1 COG1984 Allophanate hydrolase subunit 2; hydrolase subunit 1463458 14481394 APECO78_07085 Escherichia coli APEC O78 hydrolase subunit YP_007380592.1 1462526 D 1274814 CDS YP_007380593.1 443616737 14481395 1463448..1464182 1 NC_020163.1 COG1540 Uncharacterized proteins, homologs of lactam utilization protein B; LamB/YcsF family protein 1464182 14481395 APECO78_07090 Escherichia coli APEC O78 LamB/YcsF family protein YP_007380593.1 1463448 D 1274814 CDS YP_007380594.1 443616738 14481396 1464218..1465009 1 NC_020163.1 COG0266 Formamidopyrimidine-DNA glycosylase; endonuclease VIII 1465009 14481396 APECO78_07095 Escherichia coli APEC O78 endonuclease VIII YP_007380594.1 1464218 D 1274814 CDS YP_007380595.1 443616739 14481397 complement(1465006..1466052) 1 NC_020163.1 COG3180 Putative ammonia monooxygenase; aidB regulatorAbrB 1466052 14481397 APECO78_07100 Escherichia coli APEC O78 aidB regulatorAbrB YP_007380595.1 1465006 R 1274814 CDS YP_007380596.1 443616740 14481398 complement(1466204..1467265) 1 NC_020163.1 putative fimbrial-like adhesin protein 1467265 14481398 APECO78_07105 Escherichia coli APEC O78 putative fimbrial-like adhesin protein YP_007380596.1 1466204 R 1274814 CDS YP_007380597.1 443616741 14481399 complement(1467262..1467993) 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; chaperone, PapD family protein 1467993 14481399 APECO78_07110 Escherichia coli APEC O78 chaperone, PapD family protein YP_007380597.1 1467262 R 1274814 CDS YP_007380598.1 443616742 14481400 complement(1468008..1470458) 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; fimbrial biogenesis outer membrane usher protein 1470458 14481400 APECO78_07115 Escherichia coli APEC O78 fimbrial biogenesis outer membrane usher protein YP_007380598.1 1468008 R 1274814 CDS YP_007380599.1 443616743 14481401 complement(1470518..1471084) 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein 1471084 14481401 APECO78_07120 Escherichia coli APEC O78 fimbrial-like protein YP_007380599.1 1470518 R 1274814 CDS YP_007380600.1 443616744 14481402 complement(1471474..1472757) 1 NC_020163.1 COG0372 Citrate synthase; type II citrate synthase 1472757 14481402 APECO78_07125 Escherichia coli APEC O78 type II citrate synthase YP_007380600.1 1471474 R 1274814 CDS YP_007380601.1 443616745 14481403 1473466..1473855 1 NC_020163.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 large membrane subunit 1473855 14481403 APECO78_07130 Escherichia coli APEC O78 succinate dehydrogenase cytochrome b556 large membrane subunit YP_007380601.1 1473466 D 1274814 CDS YP_007380602.1 443616746 14481404 1473849..1474196 1 NC_020163.1 COG2142 Succinate dehydrogenase, hydrophobic anchor subunit; succinate dehydrogenase hydrophobic subunit 1474196 14481404 APECO78_07135 Escherichia coli APEC O78 succinate dehydrogenase hydrophobic subunit YP_007380602.1 1473849 D 1274814 CDS YP_007380603.1 443616747 14481405 1474196..1475962 1 NC_020163.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; succinate dehydrogenase flavoprotein subunit 1475962 14481405 APECO78_07140 Escherichia coli APEC O78 succinate dehydrogenase flavoprotein subunit YP_007380603.1 1474196 D 1274814 CDS YP_007380604.1 443616748 14481406 1475978..1476694 1 NC_020163.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; succinate dehydrogenase iron-sulfur subunit 1476694 sdhB 14481406 sdhB Escherichia coli APEC O78 succinate dehydrogenase iron-sulfur subunit YP_007380604.1 1475978 D 1274814 CDS YP_007380605.1 443616749 14481407 complement(1476728..1476859) 1 NC_020163.1 hypothetical protein 1476859 14481407 APECO78_07150 Escherichia coli APEC O78 hypothetical protein YP_007380605.1 1476728 R 1274814 CDS YP_007380606.1 443616750 14481408 1476995..1479796 1 NC_020163.1 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes; 2-oxoglutarate dehydrogenase E1 component 1479796 14481408 APECO78_07155 Escherichia coli APEC O78 2-oxoglutarate dehydrogenase E1 component YP_007380606.1 1476995 D 1274814 CDS YP_007380607.1 443616751 14481409 1479811..1481028 1 NC_020163.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide succinyltransferase 1481028 14481409 APECO78_07160 Escherichia coli APEC O78 dihydrolipoamide succinyltransferase YP_007380607.1 1479811 D 1274814 CDS YP_007380608.1 443616752 14481410 1481122..1482288 1 NC_020163.1 COG0045 Succinyl-CoA synthetase, beta subunit; succinyl-CoA synthetase subunit beta 1482288 14481410 APECO78_07165 Escherichia coli APEC O78 succinyl-CoA synthetase subunit beta YP_007380608.1 1481122 D 1274814 CDS YP_007380609.1 443616753 14481411 1482288..1483157 1 NC_020163.1 COG0074 Succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 1483157 14481411 APECO78_07170 Escherichia coli APEC O78 succinyl-CoA synthetase subunit alpha YP_007380609.1 1482288 D 1274814 CDS YP_007380610.1 443616754 14481412 complement(1483261..1483983) 1 NC_020163.1 COG2188 Transcriptional regulators; DNA-binding transcriptional repressor MngR 1483983 14481412 APECO78_07175 Escherichia coli APEC O78 DNA-binding transcriptional repressor MngR YP_007380610.1 1483261 R 1274814 CDS YP_007380611.1 443616755 14481413 1484092..1486068 1 NC_020163.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC 1486068 14481413 APECO78_07180 Escherichia coli APEC O78 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC YP_007380611.1 1484092 D 1274814 CDS YP_007380612.1 443616756 14481414 1486086..1488719 1 NC_020163.1 COG0383 Alpha-mannosidase; alpha-mannosidase 1488719 14481414 APECO78_07185 Escherichia coli APEC O78 alpha-mannosidase YP_007380612.1 1486086 D 1274814 CDS YP_007380613.1 443616757 14481415 1489566..1491134 1 NC_020163.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d terminal oxidase subunit 1 1491134 14481415 APECO78_07190 Escherichia coli APEC O78 cytochrome d terminal oxidase subunit 1 YP_007380613.1 1489566 D 1274814 CDS YP_007380614.1 443616758 14481416 1491150..1492289 1 NC_020163.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit 2 1492289 14481416 APECO78_07195 Escherichia coli APEC O78 cytochrome d ubiquinol oxidase subunit 2 YP_007380614.1 1491150 D 1274814 CDS YP_007380615.1 443616759 14481417 1492304..1492417 1 NC_020163.1 COG4890 Predicted outer membrane lipoprotein; cyd operon protein YbgT 1492417 14481417 APECO78_07200 Escherichia coli APEC O78 cyd operon protein YbgT YP_007380615.1 1492304 D 1274814 CDS YP_007380616.1 443616760 14481418 1492417..1492710 1 NC_020163.1 COG3790 Predicted membrane protein; hypothetical protein 1492710 14481418 APECO78_07205 Escherichia coli APEC O78 hypothetical protein YP_007380616.1 1492417 D 1274814 CDS YP_007380617.1 443616761 14481419 1492860..1493264 1 NC_020163.1 COG0824 Predicted thioesterase; acyl-CoA thioesterase YbgC 1493264 14481419 APECO78_07210 Escherichia coli APEC O78 acyl-CoA thioesterase YbgC YP_007380617.1 1492860 D 1274814 CDS YP_007380618.1 443616762 14481420 1493261..1493953 1 NC_020163.1 COG0811 Biopolymer transport proteins; colicin uptake protein TolQ 1493953 14481420 APECO78_07215 Escherichia coli APEC O78 colicin uptake protein TolQ YP_007380618.1 1493261 D 1274814 CDS YP_007380619.1 443616763 14481421 1493957..1494385 1 NC_020163.1 COG0848 Biopolymer transport protein; colicin uptake protein TolR 1494385 14481421 APECO78_07220 Escherichia coli APEC O78 colicin uptake protein TolR YP_007380619.1 1493957 D 1274814 CDS YP_007380620.1 443616764 14481422 1494450..1495715 1 NC_020163.1 COG3064 Membrane protein involved in colicin uptake; cell envelope integrity inner membrane protein TolA 1495715 14481422 APECO78_07225 Escherichia coli APEC O78 cell envelope integrity inner membrane protein TolA YP_007380620.1 1494450 D 1274814 CDS YP_007380621.1 443616765 14481423 1495848..1497140 1 NC_020163.1 COG0823 Periplasmic component of the Tol biopolymer transport system; translocation protein TolB 1497140 14481423 APECO78_07230 Escherichia coli APEC O78 translocation protein TolB YP_007380621.1 1495848 D 1274814 CDS YP_007380622.1 443616766 14481424 1497175..1497696 1 NC_020163.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated outer membrane lipoprotein 1497696 14481424 APECO78_07235 Escherichia coli APEC O78 peptidoglycan-associated outer membrane lipoprotein YP_007380622.1 1497175 D 1274814 CDS YP_007380623.1 443616767 14481425 1497706..1498497 1 NC_020163.1 COG1729 Uncharacterized protein conserved in bacteria; tol-pal system protein YbgF 1498497 14481425 APECO78_07240 Escherichia coli APEC O78 tol-pal system protein YbgF YP_007380623.1 1497706 D 1274814 CDS YP_007380624.1 443616768 14484613 1500066..1501109 1 NC_020163.1 COG0379 Quinolinate synthase; quinolinate synthetase 1501109 14484613 APECO78_07245 Escherichia coli APEC O78 quinolinate synthetase YP_007380624.1 1500066 D 1274814 CDS YP_007380625.1 443616769 14481427 1501147..1501866 1 NC_020163.1 COG3201 Nicotinamide mononucleotide transporter; nicotinamide riboside transporter PnuC 1501866 14481427 APECO78_07250 Escherichia coli APEC O78 nicotinamide riboside transporter PnuC YP_007380625.1 1501147 D 1274814 CDS YP_007380626.1 443616770 14481428 complement(1501863..1502804) 1 NC_020163.1 COG1230 Co/Zn/Cd efflux system component; zinc transporter ZitB 1502804 14481428 APECO78_07255 Escherichia coli APEC O78 zinc transporter ZitB YP_007380626.1 1501863 R 1274814 CDS YP_007380627.1 443616771 14481429 complement(1502918..1503298) 1 NC_020163.1 hypothetical protein 1503298 14481429 APECO78_07260 Escherichia coli APEC O78 hypothetical protein YP_007380627.1 1502918 R 1274814 CDS YP_007380628.1 443616772 14481430 1503614..1504666 1 NC_020163.1 COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 1504666 14481430 APECO78_07265 Escherichia coli APEC O78 phospho-2-dehydro-3-deoxyheptonate aldolase YP_007380628.1 1503614 D 1274814 CDS YP_007380629.1 443616773 14481431 complement(1504824..1505576) 1 NC_020163.1 COG0588 Phosphoglycerate mutase 1; phosphoglyceromutase 1505576 14481431 APECO78_07270 Escherichia coli APEC O78 phosphoglyceromutase YP_007380629.1 1504824 R 1274814 CDS YP_007380630.1 443616774 14481432 complement(1505781..1506821) 1 NC_020163.1 COG2017 Galactose mutarotase and related enzymes; galactose-1-epimerase 1506821 galM 14481432 galM Escherichia coli APEC O78 galactose-1-epimerase YP_007380630.1 1505781 R 1274814 CDS YP_007380631.1 443616775 14481433 complement(1506815..1507963) 1 NC_020163.1 COG0153 Galactokinase; galactokinase 1507963 14481433 APECO78_07280 Escherichia coli APEC O78 galactokinase YP_007380631.1 1506815 R 1274814 CDS YP_007380632.1 443616776 14481434 complement(1507967..1509013) 1 NC_020163.1 COG1085 Galactose-1-phosphate uridylyltransferase; galactose-1-phosphate uridylyltransferase 1509013 14481434 APECO78_07285 Escherichia coli APEC O78 galactose-1-phosphate uridylyltransferase YP_007380632.1 1507967 R 1274814 CDS YP_007380633.1 443616777 14481435 complement(1509023..1510039) 1 NC_020163.1 COG1087 UDP-glucose 4-epimerase; UDP-galactose-4-epimerase 1510039 14481435 APECO78_07290 Escherichia coli APEC O78 UDP-galactose-4-epimerase YP_007380633.1 1509023 R 1274814 CDS YP_007380634.1 443616778 14481436 complement(1510300..1511772) 1 NC_020163.1 COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; molybdenum transport ATP-binding protein ModF 1511772 14481436 APECO78_07295 Escherichia coli APEC O78 molybdenum transport ATP-binding protein ModF YP_007380634.1 1510300 R 1274814 CDS YP_007380635.1 443616779 14481437 complement(1511840..1512628) 1 NC_020163.1 COG2005 N-terminal domain of molybdenum-binding protein; DNA-binding transcriptional regulator ModE 1512628 14481437 APECO78_07300 Escherichia coli APEC O78 DNA-binding transcriptional regulator ModE YP_007380635.1 1511840 R 1274814 CDS YP_007380636.1 443616780 14481438 1512757..1512906 1 NC_020163.1 hypothetical protein 1512906 14481438 APECO78_07305 Escherichia coli APEC O78 hypothetical protein YP_007380636.1 1512757 D 1274814 CDS YP_007380637.1 443616781 14481439 1513073..1513846 1 NC_020163.1 COG0725 ABC-type molybdate transport system, periplasmic component; molybdate transporter periplasmic protein 1513846 modA 14481439 modA Escherichia coli APEC O78 molybdate transporter periplasmic protein YP_007380637.1 1513073 D 1274814 CDS YP_007380638.1 443616782 14481440 1513846..1514535 1 NC_020163.1 COG4149 ABC-type molybdate transport system, permease component; molybdate ABC transporter permease protein 1514535 modB 14481440 modB Escherichia coli APEC O78 molybdate ABC transporter permease protein YP_007380638.1 1513846 D 1274814 CDS YP_007380639.1 443616783 14481441 1514538..1515596 1 NC_020163.1 COG4148 ABC-type molybdate transport system, ATPase component; molybdate transporter ATP-binding protein 1515596 modC 14481441 modC Escherichia coli APEC O78 molybdate transporter ATP-binding protein YP_007380639.1 1514538 D 1274814 CDS YP_007380640.1 443616784 14481442 complement(1515597..1516415) 1 NC_020163.1 COG0561 Predicted hydrolases of the HAD superfamily; pyridoxal phosphate (PLP) phosphatase 1516415 14481442 APECO78_07325 Escherichia coli APEC O78 pyridoxal phosphate (PLP) phosphatase YP_007380640.1 1515597 R 1274814 CDS YP_007380641.1 443616785 14481443 1516570..1517565 1 NC_020163.1 COG2706 3-carboxymuconate cyclase; 6-phosphogluconolactonase 1517565 14481443 APECO78_07330 Escherichia coli APEC O78 6-phosphogluconolactonase YP_007380641.1 1516570 D 1274814 CDS YP_007380642.1 443616786 14481444 complement(1517606..1518559) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 1518559 14481444 APECO78_07335 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007380642.1 1517606 R 1274814 CDS YP_007380643.1 443616787 14481445 1518743..1519795 1 NC_020163.1 COG2828 Uncharacterized protein conserved in bacteria; hypothetical protein 1519795 14481445 APECO78_07340 Escherichia coli APEC O78 hypothetical protein YP_007380643.1 1518743 D 1274814 CDS YP_007380644.1 443616788 14481446 1519871..1521304 1 NC_020163.1 COG0471 Di- and tricarboxylate transporters; transporter 1521304 14481446 APECO78_07345 Escherichia coli APEC O78 transporter YP_007380644.1 1519871 D 1274814 CDS YP_007380645.1 443616789 14481447 1521487..1523748 1 NC_020163.1 COG1048 Aconitase A; hydratase 1523748 14481447 APECO78_07350 Escherichia coli APEC O78 hydratase YP_007380645.1 1521487 D 1274814 CDS YP_007380646.1 443616790 14481448 complement(1523982..1525265) 1 NC_020163.1 COG4677 Pectin methylesterase; acyl-CoA thioesterase 1525265 14481448 APECO78_07355 Escherichia coli APEC O78 acyl-CoA thioesterase YP_007380646.1 1523982 R 1274814 CDS YP_007380647.1 443616791 14481449 complement(1525400..1526470) 1 NC_020163.1 COG0582 Integrase; Integrase from phage 1526470 14481449 APECO78_07360 Escherichia coli APEC O78 Integrase from phage YP_007380647.1 1525400 R 1274814 CDS YP_007380648.1 443616792 14481450 complement(1526448..1526666) 1 NC_020163.1 excisionase 1526666 14481450 APECO78_07365 Escherichia coli APEC O78 excisionase YP_007380648.1 1526448 R 1274814 CDS YP_007380649.1 443616793 14481451 complement(1526706..1526873) 1 NC_020163.1 hypothetical protein 1526873 14481451 APECO78_07370 Escherichia coli APEC O78 hypothetical protein YP_007380649.1 1526706 R 1274814 CDS YP_007380650.1 443616794 14481452 1527146..1527511 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 1527511 14481452 APECO78_07375 Escherichia coli APEC O78 IS2 repressor TnpA YP_007380650.1 1527146 D 1274814 CDS YP_007380651.1 443616795 14481453 1527469..1528374 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 1528374 14481453 APECO78_07380 Escherichia coli APEC O78 IS2 transposase TnpB YP_007380651.1 1527469 D 1274814 CDS YP_007380652.1 443616796 14481454 complement(1528694..1529491) 1 NC_020163.1 COG0515 Serine/threonine protein kinase; Eaa prophage protein 1529491 14481454 APECO78_07385 Escherichia coli APEC O78 Eaa prophage protein YP_007380652.1 1528694 R 1274814 CDS YP_007380653.1 443616797 14481455 complement(1529502..1530257) 1 NC_020163.1 hypothetical protein 1530257 14481455 APECO78_07390 Escherichia coli APEC O78 hypothetical protein YP_007380653.1 1529502 R 1274814 CDS YP_007380654.1 443616798 14481456 complement(1530259..1530666) 1 NC_020163.1 hypothetical protein 1530666 14481456 APECO78_07395 Escherichia coli APEC O78 hypothetical protein YP_007380654.1 1530259 R 1274814 CDS YP_007380655.1 443616799 14481457 complement(1530663..1530884) 1 NC_020163.1 COG1734 DnaK suppressor protein; putative C4-type zinc finger protein 1530884 14481457 APECO78_07400 Escherichia coli APEC O78 putative C4-type zinc finger protein YP_007380655.1 1530663 R 1274814 CDS YP_007380656.1 443616800 14481458 complement(1530983..1531264) 1 NC_020163.1 hypothetical protein 1531264 14481458 APECO78_07405 Escherichia coli APEC O78 hypothetical protein YP_007380656.1 1530983 R 1274814 CDS YP_007380657.1 443616801 14481459 complement(1531195..1531278) 1 NC_020163.1 hypothetical protein 1531278 14481459 APECO78_07410 Escherichia coli APEC O78 hypothetical protein YP_007380657.1 1531195 R 1274814 CDS YP_007380658.1 443616802 14481460 complement(1531275..1531466) 1 NC_020163.1 phage protein 1531466 14481460 APECO78_07415 Escherichia coli APEC O78 phage protein YP_007380658.1 1531275 R 1274814 CDS YP_007380659.1 443616803 14481461 complement(1531439..1531630) 1 NC_020163.1 phage protein 1531630 14481461 APECO78_07420 Escherichia coli APEC O78 phage protein YP_007380659.1 1531439 R 1274814 CDS YP_007380660.1 443616804 14481462 complement(1531621..1532301) 1 NC_020163.1 phage exonuclease 1532301 14481462 APECO78_07425 Escherichia coli APEC O78 phage exonuclease YP_007380660.1 1531621 R 1274814 CDS YP_007380661.1 443616805 14481463 complement(1532298..1532480) 1 NC_020163.1 Bet protein 1532480 14481463 APECO78_07430 Escherichia coli APEC O78 Bet protein YP_007380661.1 1532298 R 1274814 CDS YP_007380662.1 443616806 14481464 complement(1532491..1532769) 1 NC_020163.1 Kil protein 1532769 14481464 APECO78_07435 Escherichia coli APEC O78 Kil protein YP_007380662.1 1532491 R 1274814 CDS YP_007380663.1 443616807 14481465 complement(1532849..1533217) 1 NC_020163.1 Lambda prophage-derived protein ea10 1533217 14481465 APECO78_07440 Escherichia coli APEC O78 Lambda prophage-derived protein ea10 YP_007380663.1 1532849 R 1274814 CDS YP_007380664.1 443616808 14481466 complement(1533400..1533600) 1 NC_020163.1 restriction alleviation protein 1533600 14481466 APECO78_07445 Escherichia coli APEC O78 restriction alleviation protein YP_007380664.1 1533400 R 1274814 CDS YP_007380665.1 443616809 14481467 complement(1533584..1533670) 1 NC_020163.1 hypothetical protein 1533670 14481467 APECO78_07450 Escherichia coli APEC O78 hypothetical protein YP_007380665.1 1533584 R 1274814 CDS YP_007380666.1 443616810 14481468 1533712..1533927 1 NC_020163.1 antitermination protein Q 1533927 14481468 APECO78_07455 Escherichia coli APEC O78 antitermination protein Q YP_007380666.1 1533712 D 1274814 CDS YP_007380667.1 443616811 14481469 complement(1534116..1535198) 1 NC_020163.1 COG3203 Outer membrane protein (porin); outer membrane porin, DLP12 prophage 1535198 14481469 APECO78_07460 Escherichia coli APEC O78 outer membrane porin, DLP12 prophage YP_007380667.1 1534116 R 1274814 CDS YP_007380668.1 443616812 14481470 1535788..1536003 1 NC_020163.1 phage lysis protein 1536003 14481470 APECO78_07465 Escherichia coli APEC O78 phage lysis protein YP_007380668.1 1535788 D 1274814 CDS YP_007380669.1 443616813 14481471 1536003..1536500 1 NC_020163.1 COG3772 Phage-related lysozyme (muraminidase); lysozyme 1536500 14481471 APECO78_07470 Escherichia coli APEC O78 lysozyme YP_007380669.1 1536003 D 1274814 CDS YP_007380670.1 443616814 14481472 1536497..1536958 1 NC_020163.1 Rz endopeptidase from lambdoid prophage DLP12 1536958 14481472 APECO78_07475 Escherichia coli APEC O78 Rz endopeptidase from lambdoid prophage DLP12 YP_007380670.1 1536497 D 1274814 CDS YP_007380671.1 443616815 14481473 complement(1536990..1537283) 1 NC_020163.1 Lambdoid prophage DLP12 Bor-like protein 1537283 14481473 APECO78_07480 Escherichia coli APEC O78 Lambdoid prophage DLP12 Bor-like protein YP_007380671.1 1536990 R 1274814 CDS YP_007380672.1 443616816 14481474 complement(1537574..1537984) 1 NC_020163.1 COG5562 Phage envelope protein; putative envelope protein 1537984 14481474 APECO78_07485 Escherichia coli APEC O78 putative envelope protein YP_007380672.1 1537574 R 1274814 CDS YP_007380673.1 443616817 14481475 1538270..1538476 1 NC_020163.1 hypothetical protein 1538476 14481475 APECO78_07490 Escherichia coli APEC O78 hypothetical protein YP_007380673.1 1538270 D 1274814 CDS YP_007380674.1 443616818 14481476 1539224..1539769 1 NC_020163.1 COG4220 Phage DNA packaging protein, Nu1 subunit of terminase; phage terminase small subunit (DNA packaging protein) 1539769 14481476 APECO78_07495 Escherichia coli APEC O78 phage terminase small subunit (DNA packaging protein) YP_007380674.1 1539224 D 1274814 CDS YP_007380675.1 443616819 14481477 1539744..1540847 1 NC_020163.1 COG5525 Bacteriophage tail assembly protein; phage terminase, large subunit 1540847 14481477 APECO78_07500 Escherichia coli APEC O78 phage terminase, large subunit YP_007380675.1 1539744 D 1274814 CDS YP_007380676.1 443616820 14481478 1540909..1541724 1 NC_020163.1 COG4733 Phage-related protein, tail component; phage-related protein, tail component 1541724 14481478 APECO78_07505 Escherichia coli APEC O78 phage-related protein, tail component YP_007380676.1 1540909 D 1274814 CDS YP_007380677.1 443616821 14481479 1541791..1542390 1 NC_020163.1 hypothetical protein 1542390 14481479 APECO78_07510 Escherichia coli APEC O78 hypothetical protein YP_007380677.1 1541791 D 1274814 CDS YP_007380678.1 443616822 14481480 1542455..1545760 1 NC_020163.1 hypothetical protein 1545760 14481480 APECO78_07515 Escherichia coli APEC O78 hypothetical protein YP_007380678.1 1542455 D 1274814 CDS YP_007380679.1 443616823 14481481 1547446..1548189 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; Putative AraC-type regulatory protein 1548189 14481481 APECO78_07520 Escherichia coli APEC O78 Putative AraC-type regulatory protein YP_007380679.1 1547446 D 1274814 CDS YP_007380680.1 443616824 14481482 complement(1548231..1548596) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; hypothetical protein 1548596 14481482 APECO78_07525 Escherichia coli APEC O78 hypothetical protein YP_007380680.1 1548231 R 1274814 CDS YP_007380681.1 443616825 14481483 1548747..1548962 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; Transposase IS3/IS911 family protein 1548962 14481483 APECO78_07530 Escherichia coli APEC O78 Transposase IS3/IS911 family protein YP_007380681.1 1548747 D 1274814 CDS YP_007380682.1 443616826 14481484 complement(1549292..1549768) 1 NC_020163.1 COG1881 Phospholipid-binding protein; kinase inhibitor protein 1549768 14481484 APECO78_07535 Escherichia coli APEC O78 kinase inhibitor protein YP_007380682.1 1549292 R 1274814 CDS YP_007380683.1 443616827 14481485 complement(1549827..1551116) 1 NC_020163.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diaminopelargonic acid synthetase 1551116 14481485 APECO78_07540 Escherichia coli APEC O78 7,8-diaminopelargonic acid synthetase YP_007380683.1 1549827 R 1274814 CDS YP_007380684.1 443616828 14481486 1551203..1552243 1 NC_020163.1 COG0502 Biotin synthase and related enzymes; biotin synthase 1552243 14481486 APECO78_07545 Escherichia coli APEC O78 biotin synthase YP_007380684.1 1551203 D 1274814 CDS YP_007380685.1 443616829 14481487 1552240..1553394 1 NC_020163.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase 1553394 14481487 APECO78_07550 Escherichia coli APEC O78 8-amino-7-oxononanoate synthase YP_007380685.1 1552240 D 1274814 CDS YP_007380686.1 443616830 14481488 1553381..1554136 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; biotin biosynthesis protein BioC 1554136 14481488 APECO78_07555 Escherichia coli APEC O78 biotin biosynthesis protein BioC YP_007380686.1 1553381 D 1274814 CDS YP_007380687.1 443616831 14481489 1554129..1554806 1 NC_020163.1 COG0132 Dethiobiotin synthetase; dithiobiotin synthetase 1554806 bioD 14481489 bioD Escherichia coli APEC O78 dithiobiotin synthetase YP_007380687.1 1554129 D 1274814 CDS YP_007380688.1 443616832 14481490 1555385..1557406 1 NC_020163.1 COG0556 Helicase subunit of the DNA excision repair complex; UvrABC system protein B 1557406 14481490 APECO78_07565 Escherichia coli APEC O78 UvrABC system protein B YP_007380688.1 1555385 D 1274814 CDS YP_007380689.1 443616833 14481491 complement(1557598..1558506) 1 NC_020163.1 COG0391 Uncharacterized conserved protein; transferase with NAD(P)-binding Rossmann-fold domain 1558506 14481491 APECO78_07570 Escherichia coli APEC O78 transferase with NAD(P)-binding Rossmann-fold domain YP_007380689.1 1557598 R 1274814 CDS YP_007380690.1 443616834 14481492 1558903..1559892 1 NC_020163.1 COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A 1559892 14481492 APECO78_07575 Escherichia coli APEC O78 molybdenum cofactor biosynthesis protein A YP_007380690.1 1558903 D 1274814 CDS YP_007380691.1 443616835 14481493 1559914..1560426 1 NC_020163.1 COG0521 Molybdopterin biosynthesis enzymes; molybdopterin biosynthesis protein B 1560426 14481493 APECO78_07580 Escherichia coli APEC O78 molybdopterin biosynthesis protein B YP_007380691.1 1559914 D 1274814 CDS YP_007380692.1 443616836 14481494 1560429..1560914 1 NC_020163.1 COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC 1560914 14481494 APECO78_07585 Escherichia coli APEC O78 molybdenum cofactor biosynthesis protein MoaC YP_007380692.1 1560429 D 1274814 CDS YP_007380693.1 443616837 14481495 1560907..1561152 1 NC_020163.1 COG1977 Molybdopterin converting factor, small subunit; molybdopterin synthase small subunit 1561152 moaD 14481495 moaD Escherichia coli APEC O78 molybdopterin synthase small subunit YP_007380693.1 1560907 D 1274814 CDS YP_007380694.1 443616838 14481496 1561154..1561606 1 NC_020163.1 COG0314 Molybdopterin converting factor, large subunit; molybdopterin guanine dinucleotide biosynthesis protein MoaE 1561606 moaE 14481496 moaE Escherichia coli APEC O78 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_007380694.1 1561154 D 1274814 CDS YP_007380695.1 443616839 14481497 1561743..1562447 1 NC_020163.1 COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein 1562447 14481497 APECO78_07600 Escherichia coli APEC O78 hypothetical protein YP_007380695.1 1561743 D 1274814 CDS YP_007380696.1 443616840 14481498 1562652..1563365 1 NC_020163.1 COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein 1563365 14481498 APECO78_07605 Escherichia coli APEC O78 hypothetical protein YP_007380696.1 1562652 D 1274814 CDS YP_007380697.1 443616841 14481499 complement(1563401..1564357) 1 NC_020163.1 COG0392 Predicted integral membrane protein; hypothetical protein 1564357 14481499 APECO78_07610 Escherichia coli APEC O78 hypothetical protein YP_007380697.1 1563401 R 1274814 CDS YP_007380698.1 443616842 14481500 complement(1564357..1565598) 1 NC_020163.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthase 2 1565598 14481500 APECO78_07615 Escherichia coli APEC O78 cardiolipin synthase 2 YP_007380698.1 1564357 R 1274814 CDS YP_007380699.1 443616843 14481501 complement(1565595..1566356) 1 NC_020163.1 COG3568 Metal-dependent hydrolase; hypothetical protein 1566356 14481501 APECO78_07620 Escherichia coli APEC O78 hypothetical protein YP_007380699.1 1565595 R 1274814 CDS YP_007380700.1 443616844 14481502 1566489..1566899 1 NC_020163.1 COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; hypothetical protein 1566899 14481502 APECO78_07625 Escherichia coli APEC O78 hypothetical protein YP_007380700.1 1566489 D 1274814 CDS YP_007380701.1 443616845 14481503 complement(1566861..1567967) 1 NC_020163.1 COG0842 ABC-type multidrug transport system, permease component; hypothetical protein 1567967 14481503 APECO78_07630 Escherichia coli APEC O78 hypothetical protein YP_007380701.1 1566861 R 1274814 CDS YP_007380702.1 443616846 14481504 complement(1567978..1569111) 1 NC_020163.1 COG0842 ABC-type multidrug transport system, permease component; ABC transporter permease 1569111 14481504 APECO78_07635 Escherichia coli APEC O78 ABC transporter permease YP_007380702.1 1567978 R 1274814 CDS YP_007380703.1 443616847 14481505 complement(1569104..1570840) 1 NC_020163.1 COG1131 ABC-type multidrug transport system, ATPase component; ATP-binding component of a transporter 1570840 14481505 APECO78_07640 Escherichia coli APEC O78 ATP-binding component of a transporter YP_007380703.1 1569104 R 1274814 CDS YP_007380704.1 443616848 14481506 complement(1570833..1571828) 1 NC_020163.1 COG0845 Membrane-fusion protein; efflux pump membrane fusion protein 1571828 14481506 APECO78_07645 Escherichia coli APEC O78 efflux pump membrane fusion protein YP_007380704.1 1570833 R 1274814 CDS YP_007380705.1 443616849 14481507 complement(1571831..1572502) 1 NC_020163.1 COG1309 Transcriptional regulator; DNA-binding transcriptional regulator 1572502 14481507 APECO78_07650 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007380705.1 1571831 R 1274814 CDS YP_007380706.1 443616850 14481508 1572731..1574095 1 NC_020163.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlE 1574095 14481508 APECO78_07655 Escherichia coli APEC O78 ATP-dependent RNA helicase RhlE YP_007380706.1 1572731 D 1274814 CDS YP_007380707.1 443616851 14481509 complement(1574327..1574809) 1 NC_020163.1 COG3236 Uncharacterized protein conserved in bacteria; hypothetical protein 1574809 14481509 APECO78_07660 Escherichia coli APEC O78 hypothetical protein YP_007380707.1 1574327 R 1274814 CDS YP_007380708.1 443616852 14481510 1574929..1577079 1 NC_020163.1 COG1199 Rad3-related DNA helicases; ATP-dependent DNA helicase DinG 1577079 14481510 APECO78_07665 Escherichia coli APEC O78 ATP-dependent DNA helicase DinG YP_007380708.1 1574929 D 1274814 CDS YP_007380709.1 443616853 14481511 1577107..1578069 1 NC_020163.1 COG0547 Anthranilate phosphoribosyltransferase; glycosyl transferase family protein 1578069 14481511 APECO78_07670 Escherichia coli APEC O78 glycosyl transferase family protein YP_007380709.1 1577107 D 1274814 CDS YP_007380710.1 443616854 14481512 1578210..1579295 1 NC_020163.1 COG2055 Malate/L-lactate dehydrogenases; dehydrogenase 1579295 14481512 APECO78_07675 Escherichia coli APEC O78 dehydrogenase YP_007380710.1 1578210 D 1274814 CDS YP_007380711.1 443616855 14481513 complement(1579524..1579784) 1 NC_020163.1 hypothetical protein 1579784 14481513 APECO78_07680 Escherichia coli APEC O78 hypothetical protein YP_007380711.1 1579524 R 1274814 CDS YP_007380712.1 443616856 14481514 complement(1580049..1580315) 1 NC_020163.1 COG1734 DnaK suppressor protein; hypothetical protein 1580315 14481514 APECO78_07685 Escherichia coli APEC O78 hypothetical protein YP_007380712.1 1580049 R 1274814 CDS YP_007380713.1 443616857 14481515 complement(1580389..1581066) 1 NC_020163.1 COG3128 Uncharacterized iron-regulated protein; putative hydroxylase 1581066 14481515 APECO78_07690 Escherichia coli APEC O78 putative hydroxylase YP_007380713.1 1580389 R 1274814 CDS YP_007380714.1 443616858 14481516 complement(1581108..1583390) 1 NC_020163.1 COG4774 Outer membrane receptor for monomeric catechols; catecholate siderophore receptor Fiu 1583390 14481516 APECO78_07695 Escherichia coli APEC O78 catecholate siderophore receptor Fiu YP_007380714.1 1581108 R 1274814 CDS YP_007380715.1 443616859 14481517 complement(1583655..1584059) 1 NC_020163.1 hypothetical protein 1584059 14481517 APECO78_07700 Escherichia coli APEC O78 hypothetical protein YP_007380715.1 1583655 R 1274814 CDS YP_007380716.1 443616860 14481518 1584191..1585117 1 NC_020163.1 COG3129 Predicted SAM-dependent methyltransferase; 23S rRNA mA1618 methyltransferase 1585117 14481518 APECO78_07705 Escherichia coli APEC O78 23S rRNA mA1618 methyltransferase YP_007380716.1 1584191 D 1274814 CDS YP_007380717.1 443616861 14481519 complement(1585114..1587339) 1 NC_020163.1 COG0668 Small-conductance mechanosensitive channel; hypothetical protein 1587339 14481519 APECO78_07710 Escherichia coli APEC O78 hypothetical protein YP_007380717.1 1585114 R 1274814 CDS YP_007380718.1 443616862 14481520 complement(1587600..1588322) 1 NC_020163.1 COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter ATP-binding protein 1588322 14481520 APECO78_07715 Escherichia coli APEC O78 glutamine ABC transporter ATP-binding protein YP_007380718.1 1587600 R 1274814 CDS YP_007380719.1 443616863 14481521 complement(1588319..1588978) 1 NC_020163.1 COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter permease 1588978 14481521 APECO78_07720 Escherichia coli APEC O78 glutamine ABC transporter permease YP_007380719.1 1588319 R 1274814 CDS YP_007380720.1 443616864 14481522 complement(1589117..1589863) 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter substrate-binding protein 1589863 14481522 APECO78_07725 Escherichia coli APEC O78 glutamine ABC transporter substrate-binding protein YP_007380720.1 1589117 R 1274814 CDS YP_007380721.1 443616865 14481523 complement(1590267..1590770) 1 NC_020163.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Global regulator, starvation conditions 1590770 14481523 APECO78_07730 Escherichia coli APEC O78 Global regulator, starvation conditions YP_007380721.1 1590267 R 1274814 CDS YP_007380722.1 443616866 14481524 complement(1591069..1591956) 1 NC_020163.1 COG5006 Predicted permease, DMT superfamily; threonine and homoserine efflux system 1591956 14481524 APECO78_07735 Escherichia coli APEC O78 threonine and homoserine efflux system YP_007380722.1 1591069 R 1274814 CDS YP_007380723.1 443616867 14481525 1592309..1592824 1 NC_020163.1 COG3637 Opacity protein and related surface antigens; outer membrane protein X 1592824 14481525 APECO78_07740 Escherichia coli APEC O78 outer membrane protein X YP_007380723.1 1592309 D 1274814 CDS YP_007380724.1 443616868 14481526 complement(1592873..1594456) 1 NC_020163.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative hydrolase, inner membrane 1594456 14481526 APECO78_07745 Escherichia coli APEC O78 putative hydrolase, inner membrane YP_007380724.1 1592873 R 1274814 CDS YP_007380725.1 443616869 14481527 complement(1594728..1594856) 1 NC_020163.1 hypothetical protein 1594856 14481527 APECO78_07750 Escherichia coli APEC O78 hypothetical protein YP_007380725.1 1594728 R 1274814 CDS YP_007380726.1 443616870 14481528 1595042..1595509 1 NC_020163.1 COG1321 Mn-dependent transcriptional regulator; manganese transport regulator MntR 1595509 14481528 APECO78_07755 Escherichia coli APEC O78 manganese transport regulator MntR YP_007380726.1 1595042 D 1274814 CDS YP_007380727.1 443616871 14481529 1595506..1596624 1 NC_020163.1 COG0471 Di- and tricarboxylate transporters; transporter 1596624 14481529 APECO78_07760 Escherichia coli APEC O78 transporter YP_007380727.1 1595506 D 1274814 CDS YP_007380728.1 443616872 14481530 complement(1596683..1597603) 1 NC_020163.1 COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase 1597603 14481530 APECO78_07765 Escherichia coli APEC O78 L,D-transpeptidase YP_007380728.1 1596683 R 1274814 CDS YP_007380729.1 443616873 14481531 1597822..1599414 1 NC_020163.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 1599414 14481531 APECO78_07770 Escherichia coli APEC O78 ABC transporter ATP-binding protein YP_007380729.1 1597822 D 1274814 CDS YP_007380730.1 443616874 14481532 complement(1599655..1600920) 1 NC_020163.1 hypothetical protein 1600920 14481532 APECO78_07775 Escherichia coli APEC O78 hypothetical protein YP_007380730.1 1599655 R 1274814 CDS YP_007380731.1 443616875 14481533 complement(1601072..1601887) 1 NC_020163.1 COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphatase SupH 1601887 14481533 APECO78_07780 Escherichia coli APEC O78 sugar phosphatase SupH YP_007380731.1 1601072 R 1274814 CDS YP_007380732.1 443616876 14481534 complement(1602033..1604465) 1 NC_020163.1 COG1882 Pyruvate-formate lyase; putative pyruvate formate lyase 1604465 14481534 APECO78_07785 Escherichia coli APEC O78 putative pyruvate formate lyase YP_007380732.1 1602033 R 1274814 CDS YP_007380733.1 443616877 14481535 complement(1604471..1605370) 1 NC_020163.1 COG1180 Pyruvate-formate lyase-activating enzyme; glycyl-radical enzyme activating protein family 1605370 14481535 APECO78_07790 Escherichia coli APEC O78 glycyl-radical enzyme activating protein family YP_007380733.1 1604471 R 1274814 CDS YP_007380734.1 443616878 14481536 1605501..1606163 1 NC_020163.1 COG0176 Transaldolase; fructose-6-phosphate aldolase 1606163 14481536 APECO78_07795 Escherichia coli APEC O78 fructose-6-phosphate aldolase YP_007380734.1 1605501 D 1274814 CDS YP_007380735.1 443616879 14481537 complement(1606239..1606988) 1 NC_020163.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; molybdopterin biosynthesis protein MoeB 1606988 14481537 APECO78_07800 Escherichia coli APEC O78 molybdopterin biosynthesis protein MoeB YP_007380735.1 1606239 R 1274814 CDS YP_007380736.1 443616880 14481538 complement(1606988..1608223) 1 NC_020163.1 COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein MoeA 1608223 14481538 APECO78_07805 Escherichia coli APEC O78 molybdopterin biosynthesis protein MoeA YP_007380736.1 1606988 R 1274814 CDS YP_007380737.1 443616881 14481539 1608427..1609392 1 NC_020163.1 COG1446 Asparaginase; isoaspartyl peptidase 1609392 14481539 APECO78_07810 Escherichia coli APEC O78 isoaspartyl peptidase YP_007380737.1 1608427 D 1274814 CDS YP_007380738.1 443616882 14481540 1609379..1611250 1 NC_020163.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; glutathione transporter ATP-binding protein 1611250 14481540 APECO78_07815 Escherichia coli APEC O78 glutathione transporter ATP-binding protein YP_007380738.1 1609379 D 1274814 CDS YP_007380739.1 443616883 14481541 1611270..1612808 1 NC_020163.1 COG0747 ABC-type dipeptide transport system, periplasmic component; glutathione ABC transporter substrate-binding protein GsiB 1612808 14481541 APECO78_07820 Escherichia coli APEC O78 glutathione ABC transporter substrate-binding protein GsiB YP_007380739.1 1611270 D 1274814 CDS YP_007380740.1 443616884 14481542 1612826..1613746 1 NC_020163.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease GsiC 1613746 14481542 APECO78_07825 Escherichia coli APEC O78 glutathione ABC transporter permease GsiC YP_007380740.1 1612826 D 1274814 CDS YP_007380741.1 443616885 14481543 1613749..1614660 1 NC_020163.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; glutathione ABC transporter permease GsiD 1614660 14481543 APECO78_07830 Escherichia coli APEC O78 glutathione ABC transporter permease GsiD YP_007380741.1 1613749 D 1274814 CDS YP_007380742.1 443616886 14481544 1614838..1617186 1 NC_020163.1 COG2200 FOG: EAL domain; hypothetical protein 1617186 14481544 APECO78_07835 Escherichia coli APEC O78 hypothetical protein YP_007380742.1 1614838 D 1274814 CDS YP_007380743.1 443616887 14481545 1617194..1618522 1 NC_020163.1 COG2199 FOG: GGDEF domain; diguanylate cyclase 1618522 14481545 APECO78_07840 Escherichia coli APEC O78 diguanylate cyclase YP_007380743.1 1617194 D 1274814 CDS YP_007380744.1 443616888 14481546 complement(1618569..1619894) 1 NC_020163.1 COG0621 2-methylthioadenine synthetase; 30S ribosomal protein S12 methylthiotransferase 1619894 14481546 APECO78_07845 Escherichia coli APEC O78 30S ribosomal protein S12 methylthiotransferase YP_007380744.1 1618569 R 1274814 CDS YP_007380745.1 443616889 14481547 1620107..1620490 1 NC_020163.1 biofilm regulator BssR 1620490 14481547 APECO78_07850 Escherichia coli APEC O78 biofilm regulator BssR YP_007380745.1 1620107 D 1274814 CDS YP_007380746.1 443616890 14481548 1620601..1621716 1 NC_020163.1 COG2133 Glucose/sorbosone dehydrogenases; putative dehydrogenase 1621716 14481548 APECO78_07855 Escherichia coli APEC O78 putative dehydrogenase YP_007380746.1 1620601 D 1274814 CDS YP_007380747.1 443616891 14481549 complement(1621713..1622339) 1 NC_020163.1 COG0625 Glutathione S-transferase; GST-like protein yliJ 1622339 14481549 APECO78_07860 Escherichia coli APEC O78 GST-like protein yliJ YP_007380747.1 1621713 R 1274814 CDS YP_007380748.1 443616892 14481550 1622586..1623788 1 NC_020163.1 COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase fraction C 1623788 14481550 APECO78_07865 Escherichia coli APEC O78 D-alanyl-D-alanine carboxypeptidase fraction C YP_007380748.1 1622586 D 1274814 CDS YP_007380749.1 443616893 14481551 complement(1623835..1624593) 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; deoxyribose operon repressor 1624593 14481551 APECO78_07870 Escherichia coli APEC O78 deoxyribose operon repressor YP_007380749.1 1623835 R 1274814 CDS YP_007380750.1 443616894 14481552 complement(1624651..1625247) 1 NC_020163.1 COG0671 Membrane-associated phospholipid phosphatase; undecaprenyl pyrophosphate phosphatase 1625247 14481552 APECO78_07875 Escherichia coli APEC O78 undecaprenyl pyrophosphate phosphatase YP_007380750.1 1624651 R 1274814 CDS YP_007380751.1 443616895 14481553 1625532..1626764 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein 1626764 14481553 APECO78_07880 Escherichia coli APEC O78 multidrug efflux system protein YP_007380751.1 1625532 D 1274814 CDS YP_007380752.1 443616896 14481554 complement(1626805..1627089) 1 NC_020163.1 hypothetical protein 1627089 14481554 APECO78_07885 Escherichia coli APEC O78 hypothetical protein YP_007380752.1 1626805 R 1274814 CDS YP_007380753.1 443616897 14481555 complement(1627175..1627990) 1 NC_020163.1 COG0561 Predicted hydrolases of the HAD superfamily; phosphatase 1627990 14481555 APECO78_07890 Escherichia coli APEC O78 phosphatase YP_007380753.1 1627175 R 1274814 CDS YP_007380754.1 443616898 14481556 complement(1627990..1629198) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative transporter 1629198 14481556 APECO78_07895 Escherichia coli APEC O78 putative transporter YP_007380754.1 1627990 R 1274814 CDS YP_007380755.1 443616899 14481557 1629282..1629818 1 NC_020163.1 COG3226 Uncharacterized protein conserved in bacteria; putative DEOR-type transcriptional regulator 1629818 14481557 APECO78_07900 Escherichia coli APEC O78 putative DEOR-type transcriptional regulator YP_007380755.1 1629282 D 1274814 CDS YP_007380756.1 443616900 14481558 complement(1629923..1630975) 1 NC_020163.1 COG0582 Integrase; integrase 1630975 14481558 APECO78_07905 Escherichia coli APEC O78 integrase YP_007380756.1 1629923 R 1274814 CDS YP_007380757.1 443616901 14481559 complement(1631162..1631353) 1 NC_020163.1 hypothetical protein 1631353 14481559 APECO78_07910 Escherichia coli APEC O78 hypothetical protein YP_007380757.1 1631162 R 1274814 CDS YP_007380758.1 443616902 14481560 complement(1631369..1631938) 1 NC_020163.1 COG2932 Predicted transcriptional regulator; repressor protein 1631938 14481560 APECO78_07915 Escherichia coli APEC O78 repressor protein YP_007380758.1 1631369 R 1274814 CDS YP_007380759.1 443616903 14481561 1632064..1632285 1 NC_020163.1 hypothetical protein 1632285 14481561 APECO78_07920 Escherichia coli APEC O78 hypothetical protein YP_007380759.1 1632064 D 1274814 CDS YP_007380760.1 443616904 14481562 1632318..1632827 1 NC_020163.1 phage regulatory protein CII 1632827 14481562 APECO78_07925 Escherichia coli APEC O78 phage regulatory protein CII YP_007380760.1 1632318 D 1274814 CDS YP_007380761.1 443616905 14481563 1632835..1633035 1 NC_020163.1 hypothetical protein 1633035 14481563 APECO78_07930 Escherichia coli APEC O78 hypothetical protein YP_007380761.1 1632835 D 1274814 CDS YP_007380762.1 443616906 14481564 1632999..1633340 1 NC_020163.1 hypothetical protein 1633340 14481564 APECO78_07935 Escherichia coli APEC O78 hypothetical protein YP_007380762.1 1632999 D 1274814 CDS YP_007380763.1 443616907 14481565 1633408..1633641 1 NC_020163.1 hypothetical protein 1633641 14481565 APECO78_07940 Escherichia coli APEC O78 hypothetical protein YP_007380763.1 1633408 D 1274814 CDS YP_007380764.1 443616908 14481566 1633641..1633868 1 NC_020163.1 COG1734 DnaK suppressor protein; hypothetical protein 1633868 14481566 APECO78_07945 Escherichia coli APEC O78 hypothetical protein YP_007380764.1 1633641 D 1274814 CDS YP_007380765.1 443616909 14481567 1633865..1634719 1 NC_020163.1 COG0338 Site-specific DNA methylase; DNA adenine methylase 1634719 14481567 APECO78_07950 Escherichia coli APEC O78 DNA adenine methylase YP_007380765.1 1633865 D 1274814 CDS YP_007380766.1 443616910 14481568 1634716..1635546 1 NC_020163.1 hypothetical protein 1635546 14481568 APECO78_07955 Escherichia coli APEC O78 hypothetical protein YP_007380766.1 1634716 D 1274814 CDS YP_007380767.1 443616911 14481569 1635546..1637918 1 NC_020163.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; replication protein A 1637918 14481569 APECO78_07960 Escherichia coli APEC O78 replication protein A YP_007380767.1 1635546 D 1274814 CDS YP_007380768.1 443616912 14481570 1638072..1638260 1 NC_020163.1 hypothetical protein 1638260 14481570 APECO78_07965 Escherichia coli APEC O78 hypothetical protein YP_007380768.1 1638072 D 1274814 CDS YP_007380769.1 443616913 14481571 1638271..1638504 1 NC_020163.1 COG1158 Transcription termination factor; Prophage protein 1638504 14481571 APECO78_07970 Escherichia coli APEC O78 Prophage protein YP_007380769.1 1638271 D 1274814 CDS YP_007380770.1 443616914 14481572 1638880..1639611 1 NC_020163.1 hypothetical protein 1639611 14481572 APECO78_07975 Escherichia coli APEC O78 hypothetical protein YP_007380770.1 1638880 D 1274814 CDS YP_007380771.1 443616915 14481573 1639611..1640228 1 NC_020163.1 hypothetical protein 1640228 14481573 APECO78_07980 Escherichia coli APEC O78 hypothetical protein YP_007380771.1 1639611 D 1274814 CDS YP_007380772.1 443616916 14481574 complement(1640269..1640772) 1 NC_020163.1 COG5518 Bacteriophage capsid portal protein; capsid portal protein 1640772 14481574 APECO78_07985 Escherichia coli APEC O78 capsid portal protein YP_007380772.1 1640269 R 1274814 CDS YP_007380773.1 443616917 14481575 1640793..1641200 1 NC_020163.1 hypothetical protein 1641200 14481575 APECO78_07990 Escherichia coli APEC O78 hypothetical protein YP_007380773.1 1640793 D 1274814 CDS YP_007380774.1 443616918 14481576 1641197..1641682 1 NC_020163.1 COG3499 Phage protein U; bacteriophage tail protein GpU 1641682 14481576 APECO78_07995 Escherichia coli APEC O78 bacteriophage tail protein GpU YP_007380774.1 1641197 D 1274814 CDS YP_007380775.1 443616919 14481577 1641679..1642779 1 NC_020163.1 COG3500 Phage protein D; Late control protein D protein 1642779 14481577 APECO78_08000 Escherichia coli APEC O78 Late control protein D protein YP_007380775.1 1641679 D 1274814 CDS YP_007380776.1 443616920 14481578 1642870..1643088 1 NC_020163.1 prophage P2 OGR-like protein 1643088 14481578 APECO78_08005 Escherichia coli APEC O78 prophage P2 OGR-like protein YP_007380776.1 1642870 D 1274814 CDS YP_007380777.1 443616921 14481579 complement(1643324..1645009) 1 NC_020163.1 COG2985 Predicted permease; transporter 1645009 14481579 APECO78_08010 Escherichia coli APEC O78 transporter YP_007380777.1 1643324 R 1274814 CDS YP_007380778.1 443616922 14481580 1645279..1645656 1 NC_020163.1 hypothetical protein 1645656 14481580 APECO78_08015 Escherichia coli APEC O78 hypothetical protein YP_007380778.1 1645279 D 1274814 CDS YP_007380779.1 443616923 14481581 complement(1645686..1645943) 1 NC_020163.1 COG0695 Glutaredoxin and related proteins; Glutaredoxin 1 1645943 14481581 APECO78_08020 Escherichia coli APEC O78 Glutaredoxin 1 YP_007380779.1 1645686 R 1274814 CDS YP_007380780.1 443616924 14481582 1646103..1646390 1 NC_020163.1 hypothetical protein 1646390 14481582 APECO78_08025 Escherichia coli APEC O78 hypothetical protein YP_007380780.1 1646103 D 1274814 CDS YP_007380781.1 443616925 14481583 1646374..1647096 1 NC_020163.1 COG0778 Nitroreductase; nitroreductase A 1647096 14481583 APECO78_08030 Escherichia coli APEC O78 nitroreductase A YP_007380781.1 1646374 D 1274814 CDS YP_007380782.1 443616926 14481584 1647157..1648059 1 NC_020163.1 COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); ribosomal protein S6 modification protein 1648059 14481584 APECO78_08035 Escherichia coli APEC O78 ribosomal protein S6 modification protein YP_007380782.1 1647157 D 1274814 CDS YP_007380783.1 443616927 14481585 1648147..1648623 1 NC_020163.1 hypothetical protein 1648623 14481585 APECO78_08040 Escherichia coli APEC O78 hypothetical protein YP_007380783.1 1648147 D 1274814 CDS YP_007380784.1 443616928 14481586 1648974..1650086 1 NC_020163.1 COG0687 Spermidine/putrescine-binding periplasmic protein; putrescine transporter subunit: periplasmic-binding component of ABC superfamily 1650086 14481586 APECO78_08045 Escherichia coli APEC O78 putrescine transporter subunit: periplasmic-binding component of ABC superfamily YP_007380784.1 1648974 D 1274814 CDS YP_007380785.1 443616929 14481587 1650181..1651314 1 NC_020163.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine transporter ATP-binding subunit 1651314 potG 14481587 potG Escherichia coli APEC O78 putrescine transporter ATP-binding subunit YP_007380785.1 1650181 D 1274814 CDS YP_007380786.1 443616930 14481588 1651324..1652277 1 NC_020163.1 COG1176 ABC-type spermidine/putrescine transport system, permease component I; putrescine transporter subunit: membrane component of ABC superfamily 1652277 14481588 APECO78_08055 Escherichia coli APEC O78 putrescine transporter subunit: membrane component of ABC superfamily YP_007380786.1 1651324 D 1274814 CDS YP_007380787.1 443616931 14481589 1652274..1653119 1 NC_020163.1 COG1177 ABC-type spermidine/putrescine transport system, permease component II; putrescine transporter subunit: membrane component of ABC superfamily 1653119 14481589 APECO78_08060 Escherichia coli APEC O78 putrescine transporter subunit: membrane component of ABC superfamily YP_007380787.1 1652274 D 1274814 CDS YP_007380788.1 443616932 14481590 1653179..1653667 1 NC_020163.1 inner membrane protein 1653667 14481590 APECO78_08065 Escherichia coli APEC O78 inner membrane protein YP_007380788.1 1653179 D 1274814 CDS YP_007380789.1 443616933 14481591 1653708..1654835 1 NC_020163.1 COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA methyluridine methyltransferase 1654835 rumB 14481591 rumB Escherichia coli APEC O78 23S rRNA methyluridine methyltransferase YP_007380789.1 1653708 D 1274814 CDS YP_007380790.1 443616934 14481592 complement(1655010..1655741) 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine 3rd transport system periplasmic binding protein ArtJ 1655741 14481592 APECO78_08075 Escherichia coli APEC O78 arginine 3rd transport system periplasmic binding protein ArtJ YP_007380790.1 1655010 R 1274814 CDS YP_007380791.1 443616935 14481593 complement(1656033..1656701) 1 NC_020163.1 COG4160 ABC-type arginine/histidine transport system, permease component; arginine transporter permease subunit ArtM 1656701 14481593 APECO78_08080 Escherichia coli APEC O78 arginine transporter permease subunit ArtM YP_007380791.1 1656033 R 1274814 CDS YP_007380792.1 443616936 14481594 complement(1656701..1657417) 1 NC_020163.1 COG4215 ABC-type arginine transport system, permease component; arginine transporter permease subunit ArtQ 1657417 14481594 APECO78_08085 Escherichia coli APEC O78 arginine transporter permease subunit ArtQ YP_007380792.1 1656701 R 1274814 CDS YP_007380793.1 443616937 14481595 complement(1657424..1658155) 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; arginine ABC transporter substrate-binding protein 1658155 14481595 APECO78_08090 Escherichia coli APEC O78 arginine ABC transporter substrate-binding protein YP_007380793.1 1657424 R 1274814 CDS YP_007380794.1 443616938 14481596 complement(1658173..1658901) 1 NC_020163.1 COG4161 ABC-type arginine transport system, ATPase component; arginine transport system ATP-binding protein 1658901 14481596 APECO78_08095 Escherichia coli APEC O78 arginine transport system ATP-binding protein YP_007380794.1 1658173 R 1274814 CDS YP_007380795.1 443616939 14481597 complement(1659119..1659634) 1 NC_020163.1 lipoprotein 1659634 14481597 APECO78_08100 Escherichia coli APEC O78 lipoprotein YP_007380795.1 1659119 R 1274814 CDS YP_007380796.1 443616940 14481598 1659760..1660083 1 NC_020163.1 COG0393 Uncharacterized conserved protein; hypothetical protein 1660083 14481598 APECO78_08105 Escherichia coli APEC O78 hypothetical protein YP_007380796.1 1659760 D 1274814 CDS YP_007380797.1 443616941 14481599 1660080..1660910 1 NC_020163.1 COG3023 Negative regulator of beta-lactamase expression; N-acetylmuramoyl-L-alanine amidase AmiD 1660910 14481599 APECO78_08110 Escherichia coli APEC O78 N-acetylmuramoyl-L-alanine amidase AmiD YP_007380797.1 1660080 D 1274814 CDS YP_007380798.1 443616942 14481600 complement(1660907..1661920) 1 NC_020163.1 COG0451 Nucleoside-diphosphate-sugar epimerases; putative nucleotide di-P-sugar epimerase or dehydratase 1661920 14481600 APECO78_08115 Escherichia coli APEC O78 putative nucleotide di-P-sugar epimerase or dehydratase YP_007380798.1 1660907 R 1274814 CDS YP_007380799.1 443616943 14481601 complement(1662019..1663449) 1 NC_020163.1 COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein 1663449 14481601 APECO78_08120 Escherichia coli APEC O78 hypothetical protein YP_007380799.1 1662019 R 1274814 CDS YP_007380800.1 443616944 14481602 complement(1663460..1664461) 1 NC_020163.1 COG2008 Threonine aldolase; L-threonine aldolase 1664461 14481602 APECO78_08125 Escherichia coli APEC O78 L-threonine aldolase YP_007380800.1 1663460 R 1274814 CDS YP_007380801.1 443616945 14481603 complement(1664498..1666216) 1 NC_020163.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate dehydrogenase 1666216 14481603 APECO78_08130 Escherichia coli APEC O78 pyruvate dehydrogenase YP_007380801.1 1664498 R 1274814 CDS YP_007380802.1 443616946 14481604 complement(1666349..1667317) 1 NC_020163.1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; HCP oxidoreductase 1667317 14481604 APECO78_08135 Escherichia coli APEC O78 HCP oxidoreductase YP_007380802.1 1666349 R 1274814 CDS YP_007380803.1 443616947 14481605 complement(1667329..1668981) 1 NC_020163.1 COG1151 6Fe-6S prismane cluster-containing protein; hybrid cluster protein 1668981 14481605 APECO78_08140 Escherichia coli APEC O78 hybrid cluster protein YP_007380803.1 1667329 R 1274814 CDS YP_007380804.1 443616948 14481606 complement(1669125..1670024) 1 NC_020163.1 COG2431 Predicted membrane protein; transporter 1670024 14481606 APECO78_08145 Escherichia coli APEC O78 transporter YP_007380804.1 1669125 R 1274814 CDS YP_007380805.1 443616949 14481607 complement(1670519..1671214) 1 NC_020163.1 COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); aquaporin Z 1671214 14481607 APECO78_08150 Escherichia coli APEC O78 aquaporin Z YP_007380805.1 1670519 R 1274814 CDS YP_007380806.1 443616950 14481608 1671640..1673298 1 NC_020163.1 COG3593 Predicted ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease 1673298 14481608 APECO78_08155 Escherichia coli APEC O78 ATP-dependent OLD family endonuclease YP_007380806.1 1671640 D 1274814 CDS YP_007380807.1 443616951 14481609 complement(1673295..1674287) 1 NC_020163.1 COG2990 Uncharacterized protein conserved in bacteria; hypothetical protein 1674287 14481609 APECO78_08160 Escherichia coli APEC O78 hypothetical protein YP_007380807.1 1673295 R 1274814 CDS YP_007380808.1 443616952 14481610 1674402..1675517 1 NC_020163.1 COG0845 Membrane-fusion protein; macrolide transporter subunit MacA 1675517 14481610 APECO78_08165 Escherichia coli APEC O78 macrolide transporter subunit MacA YP_007380808.1 1674402 D 1274814 CDS YP_007380809.1 443616953 14481611 1675514..1677460 1 NC_020163.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; macrolide ABC transporter ATP-binding protein/membrane protein 1677460 14481611 APECO78_08170 Escherichia coli APEC O78 macrolide ABC transporter ATP-binding protein/membrane protein YP_007380809.1 1675514 D 1274814 CDS YP_007380810.1 443616954 14481612 complement(1677533..1677757) 1 NC_020163.1 COG1278 Cold shock proteins; Cold shock-like protein cspD 1677757 14481612 APECO78_08175 Escherichia coli APEC O78 Cold shock-like protein cspD YP_007380810.1 1677533 R 1274814 CDS YP_007380811.1 443616955 14481613 1678080..1678400 1 NC_020163.1 COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adaptor protein ClpS 1678400 14481613 APECO78_08180 Escherichia coli APEC O78 ATP-dependent Clp protease adaptor protein ClpS YP_007380811.1 1678080 D 1274814 CDS YP_007380812.1 443616956 14481614 1678431..1680707 1 NC_020163.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit 1680707 clpA 14481614 clpA Escherichia coli APEC O78 ATP-dependent Clp protease ATP-binding subunit YP_007380812.1 1678431 D 1274814 CDS YP_007380813.1 443616957 14484614 complement(1681392..1681610) 1 NC_020163.1 COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 1681610 14484614 APECO78_08190 Escherichia coli APEC O78 translation initiation factor IF-1 YP_007380813.1 1681392 R 1274814 CDS YP_007380814.1 443616958 14481616 complement(1681895..1682599) 1 NC_020163.1 COG2360 Leu/Phe-tRNA-protein transferase; leucyl/phenylalanyl-tRNA--protein transferase 1682599 14481616 APECO78_08195 Escherichia coli APEC O78 leucyl/phenylalanyl-tRNA--protein transferase YP_007380814.1 1681895 R 1274814 CDS YP_007380815.1 443616959 14481617 complement(1682641..1684362) 1 NC_020163.1 COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components; cysteine/glutathione ABC transporter membrane/ATP-binding component 1684362 14481617 APECO78_08200 Escherichia coli APEC O78 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_007380815.1 1682641 R 1274814 CDS YP_007380816.1 443616960 14481618 complement(1684363..1686129) 1 NC_020163.1 COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; cysteine/glutathione ABC transporter membrane/ATP-binding component 1686129 14481618 APECO78_08205 Escherichia coli APEC O78 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_007380816.1 1684363 R 1274814 CDS YP_007380817.1 443616961 14481619 complement(1686252..1687217) 1 NC_020163.1 COG0492 Thioredoxin reductase; thioredoxin reductase 1687217 14481619 APECO78_08210 Escherichia coli APEC O78 thioredoxin reductase YP_007380817.1 1686252 R 1274814 CDS YP_007380818.1 443616962 14481620 1687761..1688255 1 NC_020163.1 COG1522 Transcriptional regulators; leucine-responsive transcriptional regulator 1688255 14481620 APECO78_08215 Escherichia coli APEC O78 leucine-responsive transcriptional regulator YP_007380818.1 1687761 D 1274814 CDS YP_007380819.1 443616963 14481621 1688390..1692496 1 NC_020163.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; DNA translocase FtsK 1692496 14481621 APECO78_08220 Escherichia coli APEC O78 DNA translocase FtsK YP_007380819.1 1688390 D 1274814 CDS YP_007380820.1 443616964 14481622 1692651..1693262 1 NC_020163.1 COG2834 Outer membrane lipoprotein-sorting protein; outer-membrane lipoprotein carrier protein 1693262 14481622 APECO78_08225 Escherichia coli APEC O78 outer-membrane lipoprotein carrier protein YP_007380820.1 1692651 D 1274814 CDS YP_007380821.1 443616965 14481623 1693273..1694616 1 NC_020163.1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA 1694616 14481623 APECO78_08230 Escherichia coli APEC O78 recombination factor protein RarA YP_007380821.1 1693273 D 1274814 CDS YP_007380822.1 443616966 14481624 1694707..1695999 1 NC_020163.1 COG0172 Seryl-tRNA synthetase; seryl-tRNA synthetase 1695999 14481624 APECO78_08235 Escherichia coli APEC O78 seryl-tRNA synthetase YP_007380822.1 1694707 D 1274814 CDS YP_007380823.1 443616967 14481625 1696238..1698682 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; anaerobic dimethyl sulfoxide reductase subunit A 1698682 14481625 APECO78_08240 Escherichia coli APEC O78 anaerobic dimethyl sulfoxide reductase subunit A YP_007380823.1 1696238 D 1274814 CDS YP_007380824.1 443616968 14481626 1698693..1699310 1 NC_020163.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; anaerobic dimethyl sulfoxide reductase subunit B 1699310 14481626 APECO78_08245 Escherichia coli APEC O78 anaerobic dimethyl sulfoxide reductase subunit B YP_007380824.1 1698693 D 1274814 CDS YP_007380825.1 443616969 14481627 1699312..1700175 1 NC_020163.1 COG3302 DMSO reductase anchor subunit; dimethyl sulfoxide reductase, anaerobic subunit C 1700175 14481627 APECO78_08250 Escherichia coli APEC O78 dimethyl sulfoxide reductase, anaerobic subunit C YP_007380825.1 1699312 D 1274814 CDS YP_007380826.1 443616970 14481628 complement(1700211..1700837) 1 NC_020163.1 COG1335 Amidases related to nicotinamidase; hydrolase 1700837 14481628 APECO78_08255 Escherichia coli APEC O78 hydrolase YP_007380826.1 1700211 R 1274814 CDS YP_007380827.1 443616971 14481629 1701151..1702299 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; MFS family transporter protein 1702299 14481629 APECO78_08260 Escherichia coli APEC O78 MFS family transporter protein YP_007380827.1 1701151 D 1274814 CDS YP_007380828.1 443616972 14481630 1702509..1703939 1 NC_020163.1 COG0531 Amino acid transporters; transporter 1703939 14481630 APECO78_08265 Escherichia coli APEC O78 transporter YP_007380828.1 1702509 D 1274814 CDS YP_007380829.1 443616973 14481631 complement(1703940..1704848) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 1704848 14481631 APECO78_08270 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007380829.1 1703940 R 1274814 CDS YP_007380830.1 443616974 14481632 1704948..1705538 1 NC_020163.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); hypothetical protein 1705538 14481632 APECO78_08275 Escherichia coli APEC O78 hypothetical protein YP_007380830.1 1704948 D 1274814 CDS YP_007380831.1 443616975 14481633 complement(1705620..1706417) 1 NC_020163.1 COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate lyase-activating enzyme 1 1706417 pflA 14481633 pflA Escherichia coli APEC O78 pyruvate formate lyase-activating enzyme 1 YP_007380831.1 1705620 R 1274814 CDS YP_007380832.1 443616976 14481634 complement(1706449..1707444) 1 NC_020163.1 COG0582 Integrase; site-specific recombinase, phage integrase family protein 1707444 14481634 APECO78_08285 Escherichia coli APEC O78 site-specific recombinase, phage integrase family protein YP_007380832.1 1706449 R 1274814 CDS YP_007380833.1 443616977 14481635 complement(1707538..1707786) 1 NC_020163.1 Phage protein C 1707786 14481635 APECO78_08290 Escherichia coli APEC O78 Phage protein C YP_007380833.1 1707538 R 1274814 CDS YP_007380834.1 443616978 14481636 1707954..1708310 1 NC_020163.1 COG0184 Ribosomal protein S15P/S13E; phage regulatory protein 1708310 14481636 APECO78_08295 Escherichia coli APEC O78 phage regulatory protein YP_007380834.1 1707954 D 1274814 CDS YP_007380835.1 443616979 14481637 1708321..1708491 1 NC_020163.1 hypothetical protein 1708491 14481637 APECO78_08300 Escherichia coli APEC O78 hypothetical protein YP_007380835.1 1708321 D 1274814 CDS YP_007380836.1 443616980 14481638 1708488..1708988 1 NC_020163.1 replication protein B 1708988 14481638 APECO78_08305 Escherichia coli APEC O78 replication protein B YP_007380836.1 1708488 D 1274814 CDS YP_007380837.1 443616981 14481639 1709052..1709264 1 NC_020163.1 hypothetical protein 1709264 14481639 APECO78_08310 Escherichia coli APEC O78 hypothetical protein YP_007380837.1 1709052 D 1274814 CDS YP_007380838.1 443616982 14481640 1709279..1709524 1 NC_020163.1 COG2238 Ribosomal protein S19E (S16A); hypothetical protein 1709524 14481640 APECO78_08315 Escherichia coli APEC O78 hypothetical protein YP_007380838.1 1709279 D 1274814 CDS YP_007380839.1 443616983 14481641 1709521..1709811 1 NC_020163.1 hypothetical protein 1709811 14481641 APECO78_08320 Escherichia coli APEC O78 hypothetical protein YP_007380839.1 1709521 D 1274814 CDS YP_007380840.1 443616984 14481642 1709811..1710035 1 NC_020163.1 COG1734 DnaK suppressor protein; C4-type zinc finger protein, DksA/TraR family 1710035 14481642 APECO78_08325 Escherichia coli APEC O78 C4-type zinc finger protein, DksA/TraR family YP_007380840.1 1709811 D 1274814 CDS YP_007380841.1 443616985 14481643 1710032..1710307 1 NC_020163.1 hypothetical protein 1710307 14481643 APECO78_08330 Escherichia coli APEC O78 hypothetical protein YP_007380841.1 1710032 D 1274814 CDS YP_007380842.1 443616986 14481644 1710297..1712582 1 NC_020163.1 replication protein A 1712582 14481644 APECO78_08335 Escherichia coli APEC O78 replication protein A YP_007380842.1 1710297 D 1274814 CDS YP_007380843.1 443616987 14481645 1712582..1713034 1 NC_020163.1 hypothetical protein 1713034 14481645 APECO78_08340 Escherichia coli APEC O78 hypothetical protein YP_007380843.1 1712582 D 1274814 CDS YP_007380844.1 443616988 14481646 1713034..1713240 1 NC_020163.1 hypothetical protein 1713240 14481646 APECO78_08345 Escherichia coli APEC O78 hypothetical protein YP_007380844.1 1713034 D 1274814 CDS YP_007380845.1 443616989 14481647 1713464..1714195 1 NC_020163.1 hypothetical protein 1714195 14481647 APECO78_08350 Escherichia coli APEC O78 hypothetical protein YP_007380845.1 1713464 D 1274814 CDS YP_007380846.1 443616990 14481648 1714306..1715088 1 NC_020163.1 COG0058 Glucan phosphorylase; hypothetical protein 1715088 14481648 APECO78_08355 Escherichia coli APEC O78 hypothetical protein YP_007380846.1 1714306 D 1274814 CDS YP_007380847.1 443616991 14481649 complement(1715437..1716471) 1 NC_020163.1 COG5518 Bacteriophage capsid portal protein; phage capsid protein 1716471 14481649 APECO78_08360 Escherichia coli APEC O78 phage capsid protein YP_007380847.1 1715437 R 1274814 CDS YP_007380848.1 443616992 14481650 complement(1716471..1718243) 1 NC_020163.1 Terminase, ATPase subunit (GpP) 1718243 14481650 APECO78_08365 Escherichia coli APEC O78 Terminase, ATPase subunit (GpP) YP_007380848.1 1716471 R 1274814 CDS YP_007380849.1 443616993 14481651 1718417..1719271 1 NC_020163.1 Phage capsid scaffolding protein 1719271 14481651 APECO78_08370 Escherichia coli APEC O78 Phage capsid scaffolding protein YP_007380849.1 1718417 D 1274814 CDS YP_007380850.1 443616994 14481652 1719330..1720403 1 NC_020163.1 major capsid protein 1720403 14481652 APECO78_08375 Escherichia coli APEC O78 major capsid protein YP_007380850.1 1719330 D 1274814 CDS YP_007380851.1 443616995 14481653 1720407..1721150 1 NC_020163.1 small terminase subunit 1721150 14481653 APECO78_08380 Escherichia coli APEC O78 small terminase subunit YP_007380851.1 1720407 D 1274814 CDS YP_007380852.1 443616996 14481654 1721253..1721912 1 NC_020163.1 Head completion/stabilization protein (GpL) 1721912 14481654 APECO78_08385 Escherichia coli APEC O78 Head completion/stabilization protein (GpL) YP_007380852.1 1721253 D 1274814 CDS YP_007380853.1 443616997 14481655 1722159..1722584 1 NC_020163.1 putative Protein lysB from bacteriophage P2 1722584 14481655 APECO78_08390 Escherichia coli APEC O78 putative Protein lysB from bacteriophage P2 YP_007380853.1 1722159 D 1274814 CDS YP_007380854.1 443616998 14481656 1722571..1722729 1 NC_020163.1 phage lysis protein 1722729 14481656 APECO78_08395 Escherichia coli APEC O78 phage lysis protein YP_007380854.1 1722571 D 1274814 CDS YP_007380855.1 443616999 14481657 1722692..1723159 1 NC_020163.1 P2 phage tail completion protein R, GpR 1723159 14481657 APECO78_08400 Escherichia coli APEC O78 P2 phage tail completion protein R, GpR YP_007380855.1 1722692 D 1274814 CDS YP_007380856.1 443617000 14481658 1723152..1723604 1 NC_020163.1 Phage tail completion protein 1723604 14481658 APECO78_08405 Escherichia coli APEC O78 Phage tail completion protein YP_007380856.1 1723152 D 1274814 CDS YP_007380857.1 443617001 14481659 complement(1723676..1724461) 1 NC_020163.1 hypothetical protein 1724461 14481659 APECO78_08410 Escherichia coli APEC O78 hypothetical protein YP_007380857.1 1723676 R 1274814 CDS YP_007380858.1 443617002 14481660 1724545..1725174 1 NC_020163.1 COG4540 Phage P2 baseplate assembly protein gpV; Baseplate assembly protein GpV 1725174 14481660 APECO78_08415 Escherichia coli APEC O78 Baseplate assembly protein GpV YP_007380858.1 1724545 D 1274814 CDS YP_007380859.1 443617003 14481661 1725233..1725928 1 NC_020163.1 COG3948 Phage-related baseplate assembly protein; baseplate assembly protein J 1725928 14481661 APECO78_08420 Escherichia coli APEC O78 baseplate assembly protein J YP_007380859.1 1725233 D 1274814 CDS YP_007380860.1 443617004 14481662 1725921..1726451 1 NC_020163.1 COG4385 Bacteriophage P2-related tail formation protein; phage tail protein I 1726451 14481662 APECO78_08425 Escherichia coli APEC O78 phage tail protein I YP_007380860.1 1725921 D 1274814 CDS YP_007380861.1 443617005 14481663 1726462..1728708 1 NC_020163.1 COG5301 Phage-related tail fibre protein; putative tail fiber protein (GpH) 1728708 14481663 APECO78_08430 Escherichia coli APEC O78 putative tail fiber protein (GpH) YP_007380861.1 1726462 D 1274814 CDS YP_007380862.1 443617006 14481664 1728712..1729239 1 NC_020163.1 tail assembly chaperone gp38 1729239 14481664 APECO78_08435 Escherichia coli APEC O78 tail assembly chaperone gp38 YP_007380862.1 1728712 D 1274814 CDS YP_007380863.1 443617007 14481665 complement(1729463..1729741) 1 NC_020163.1 putative SinR-like protein 1729741 14481665 APECO78_08440 Escherichia coli APEC O78 putative SinR-like protein YP_007380863.1 1729463 R 1274814 CDS YP_007380864.1 443617008 14481666 complement(1729794..1729973) 1 NC_020163.1 hypothetical protein 1729973 14481666 APECO78_08445 Escherichia coli APEC O78 hypothetical protein YP_007380864.1 1729794 R 1274814 CDS YP_007380865.1 443617009 14481667 1730465..1731157 1 NC_020163.1 hypothetical protein 1731157 14481667 APECO78_08450 Escherichia coli APEC O78 hypothetical protein YP_007380865.1 1730465 D 1274814 CDS YP_007380866.1 443617010 14481668 1731418..1732608 1 NC_020163.1 COG3497 Phage tail sheath protein FI; major tail sheath protein FI 1732608 14481668 APECO78_08455 Escherichia coli APEC O78 major tail sheath protein FI YP_007380866.1 1731418 D 1274814 CDS YP_007380867.1 443617011 14481669 1732621..1733139 1 NC_020163.1 COG3498 Phage tail tube protein FII; phage major tail tube protein FII 1733139 14481669 APECO78_08460 Escherichia coli APEC O78 phage major tail tube protein FII YP_007380867.1 1732621 D 1274814 CDS YP_007380868.1 443617012 14481670 1733196..1733471 1 NC_020163.1 hypothetical protein 1733471 14481670 APECO78_08465 Escherichia coli APEC O78 hypothetical protein YP_007380868.1 1733196 D 1274814 CDS YP_007380869.1 443617013 14481671 1733504..1733623 1 NC_020163.1 putative prophage tail protein 1733623 14481671 APECO78_08470 Escherichia coli APEC O78 putative prophage tail protein YP_007380869.1 1733504 D 1274814 CDS YP_007380870.1 443617014 14481672 1733616..1736063 1 NC_020163.1 COG0419 ATPase involved in DNA repair; hypothetical protein 1736063 14481672 APECO78_08475 Escherichia coli APEC O78 hypothetical protein YP_007380870.1 1733616 D 1274814 CDS YP_007380871.1 443617015 14481673 1736078..1736557 1 NC_020163.1 COG3499 Phage protein U; gpU phage protein 1736557 14481673 APECO78_08480 Escherichia coli APEC O78 gpU phage protein YP_007380871.1 1736078 D 1274814 CDS YP_007380872.1 443617016 14481674 1736557..1737720 1 NC_020163.1 COG3500 Phage protein D; Putative phage late control protein D 1737720 14481674 APECO78_08485 Escherichia coli APEC O78 Putative phage late control protein D YP_007380872.1 1736557 D 1274814 CDS YP_007380873.1 443617017 14481675 1737766..1738020 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); DNA-binding transcriptional regulator 1738020 14481675 APECO78_08490 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007380873.1 1737766 D 1274814 CDS YP_007380874.1 443617018 14481676 complement(1738339..1740621) 1 NC_020163.1 COG1882 Pyruvate-formate lyase; pyruvate formate-lyase 1740621 14481676 APECO78_08495 Escherichia coli APEC O78 pyruvate formate-lyase YP_007380874.1 1738339 R 1274814 CDS YP_007380875.1 443617019 14481677 complement(1740676..1741533) 1 NC_020163.1 COG2116 Formate/nitrite family of transporters; formate transporter 1741533 14481677 APECO78_08500 Escherichia coli APEC O78 formate transporter YP_007380875.1 1740676 R 1274814 CDS YP_007380876.1 443617020 14481678 complement(1741939..1743699) 1 NC_020163.1 COG1944 Uncharacterized conserved protein; hypothetical protein 1743699 14481678 APECO78_08505 Escherichia coli APEC O78 hypothetical protein YP_007380876.1 1741939 R 1274814 CDS YP_007380877.1 443617021 14481679 1743829..1744521 1 NC_020163.1 COG2323 Predicted membrane protein; hypothetical protein 1744521 14481679 APECO78_08510 Escherichia coli APEC O78 hypothetical protein YP_007380877.1 1743829 D 1274814 CDS YP_007380878.1 443617022 14481680 1744720..1745808 1 NC_020163.1 COG1932 Phosphoserine aminotransferase; 3-phosphoserine/phosphohydroxythreonine aminotransferase 1745808 14481680 APECO78_08515 Escherichia coli APEC O78 3-phosphoserine/phosphohydroxythreonine aminotransferase YP_007380878.1 1744720 D 1274814 CDS YP_007380879.1 443617023 14481681 1745879..1747162 1 NC_020163.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 1747162 14481681 APECO78_08520 Escherichia coli APEC O78 3-phosphoshikimate 1-carboxyvinyltransferase YP_007380879.1 1745879 D 1274814 CDS YP_007380880.1 443617024 14481682 1747331..1748095 1 NC_020163.1 COG0501 Zn-dependent protease with chaperone function; putative heat shock protein 1748095 14481682 APECO78_08525 Escherichia coli APEC O78 putative heat shock protein YP_007380880.1 1747331 D 1274814 CDS YP_007380881.1 443617025 14481683 1748268..1748951 1 NC_020163.1 COG0283 Cytidylate kinase; cytidylate kinase 1748951 14481683 APECO78_08530 Escherichia coli APEC O78 cytidylate kinase YP_007380881.1 1748268 D 1274814 CDS YP_007380882.1 443617026 14481684 1749062..1750735 1 NC_020163.1 COG0539 Ribosomal protein S1; 30S ribosomal protein S1 1750735 14481684 APECO78_08535 Escherichia coli APEC O78 30S ribosomal protein S1 YP_007380882.1 1749062 D 1274814 CDS YP_007380883.1 443617027 14481685 1750895..1751179 1 NC_020163.1 COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit beta 1751179 14481685 APECO78_08540 Escherichia coli APEC O78 integration host factor subunit beta YP_007380883.1 1750895 D 1274814 CDS YP_007380884.1 443617028 14481686 1751386..1753650 1 NC_020163.1 COG0658 Predicted membrane metal-binding protein; ComEC family competence protein 1753650 14481686 APECO78_08545 Escherichia coli APEC O78 ComEC family competence protein YP_007380884.1 1751386 D 1274814 CDS YP_007380885.1 443617029 14481687 1753687..1755435 1 NC_020163.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; lipid transporter ATP-binding protein/permease 1755435 14481687 APECO78_08550 Escherichia coli APEC O78 lipid transporter ATP-binding protein/permease YP_007380885.1 1753687 D 1274814 CDS YP_007380886.1 443617030 14481688 1755432..1756418 1 NC_020163.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 1756418 lpxK 14481688 lpxK Escherichia coli APEC O78 tetraacyldisaccharide 4'-kinase YP_007380886.1 1755432 D 1274814 CDS YP_007380887.1 443617031 14481689 1756455..1757687 1 NC_020163.1 COG3214 Uncharacterized protein conserved in bacteria; hypothetical protein 1757687 14481689 APECO78_08560 Escherichia coli APEC O78 hypothetical protein YP_007380887.1 1756455 D 1274814 CDS YP_007380888.1 443617032 14481690 1757739..1757921 1 NC_020163.1 COG2835 Uncharacterized conserved protein; hypothetical protein 1757921 14481690 APECO78_08565 Escherichia coli APEC O78 hypothetical protein YP_007380888.1 1757739 D 1274814 CDS YP_007380889.1 443617033 14481691 1757918..1758664 1 NC_020163.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-manno-octulosonate cytidylyltransferase 1758664 14481691 APECO78_08570 Escherichia coli APEC O78 3-deoxy-manno-octulosonate cytidylyltransferase YP_007380889.1 1757918 D 1274814 CDS YP_007380890.1 443617034 14481692 1758818..1759711 1 NC_020163.1 hypothetical protein 1759711 14481692 APECO78_08575 Escherichia coli APEC O78 hypothetical protein YP_007380890.1 1758818 D 1274814 CDS YP_007380891.1 443617035 14481693 complement(1759688..1760467) 1 NC_020163.1 COG1434 Uncharacterized conserved protein; hypothetical protein 1760467 14481693 APECO78_08580 Escherichia coli APEC O78 hypothetical protein YP_007380891.1 1759688 R 1274814 CDS YP_007380892.1 443617036 14481694 1760603..1761388 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; putative metallothionein SmtA 1761388 14481694 APECO78_08585 Escherichia coli APEC O78 putative metallothionein SmtA YP_007380892.1 1760603 D 1274814 CDS YP_007380893.1 443617037 14481695 1761385..1762707 1 NC_020163.1 COG3006 Uncharacterized protein involved in chromosome partitioning; condesin subunit F 1762707 14481695 APECO78_08590 Escherichia coli APEC O78 condesin subunit F YP_007380893.1 1761385 D 1274814 CDS YP_007380894.1 443617038 14481696 1762688..1763392 1 NC_020163.1 COG3095 Uncharacterized protein involved in chromosome partitioning; condesin subunit E 1763392 14481696 APECO78_08595 Escherichia coli APEC O78 condesin subunit E YP_007380894.1 1762688 D 1274814 CDS YP_007380895.1 443617039 14481697 1763392..1767852 1 NC_020163.1 COG3096 Uncharacterized protein involved in chromosome partitioning; cell division protein MukB 1767852 mukB 14481697 mukB Escherichia coli APEC O78 cell division protein MukB YP_007380895.1 1763392 D 1274814 CDS YP_007380896.1 443617040 14481698 1768113..1769960 1 NC_020163.1 COG2989 Uncharacterized protein conserved in bacteria; murein L,D-transpeptidase 1769960 14481698 APECO78_08605 Escherichia coli APEC O78 murein L,D-transpeptidase YP_007380896.1 1768113 D 1274814 CDS YP_007380897.1 443617041 14481699 1770141..1770689 1 NC_020163.1 COG3108 Uncharacterized protein conserved in bacteria; hypothetical protein 1770689 14481699 APECO78_08610 Escherichia coli APEC O78 hypothetical protein YP_007380897.1 1770141 D 1274814 CDS YP_007380898.1 443617042 14481700 1770716..1771363 1 NC_020163.1 COG0491 Zn-dependent hydrolases, including glyoxylases; metal-binding enzyme 1771363 14481700 APECO78_08615 Escherichia coli APEC O78 metal-binding enzyme YP_007380898.1 1770716 D 1274814 CDS YP_007380899.1 443617043 14481701 complement(1771278..1771526) 1 NC_020163.1 hypothetical protein 1771526 14481701 APECO78_08620 Escherichia coli APEC O78 hypothetical protein YP_007380899.1 1771278 R 1274814 CDS YP_007380900.1 443617044 14481702 complement(1771585..1772775) 1 NC_020163.1 COG1448 Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase 1772775 14481702 APECO78_08625 Escherichia coli APEC O78 aromatic amino acid aminotransferase YP_007380900.1 1771585 R 1274814 CDS YP_007380901.1 443617045 14481703 1772774..1772944 1 NC_020163.1 hypothetical protein 1772944 14481703 APECO78_08630 Escherichia coli APEC O78 hypothetical protein YP_007380901.1 1772774 D 1274814 CDS YP_007380902.1 443617046 14481704 complement(1772960..1774048) 1 NC_020163.1 COG3203 Outer membrane protein (porin); outer membrane protein F 1774048 14481704 APECO78_08635 Escherichia coli APEC O78 outer membrane protein F YP_007380902.1 1772960 R 1274814 CDS YP_007380903.1 443617047 14481705 complement(1774650..1776050) 1 NC_020163.1 COG0017 Aspartyl/asparaginyl-tRNA synthetases; asparaginyl-tRNA synthetase 1776050 14481705 APECO78_08640 Escherichia coli APEC O78 asparaginyl-tRNA synthetase YP_007380903.1 1774650 R 1274814 CDS YP_007380904.1 443617048 14481706 complement(1776219..1777421) 1 NC_020163.1 COG1488 Nicotinic acid phosphoribosyltransferase; nicotinate phosphoribosyltransferase 1777421 14481706 APECO78_08645 Escherichia coli APEC O78 nicotinate phosphoribosyltransferase YP_007380904.1 1776219 R 1274814 CDS YP_007380905.1 443617049 14481707 1777687..1780299 1 NC_020163.1 COG0308 Aminopeptidase N; aminopeptidase N 1780299 pepN 14481707 pepN Escherichia coli APEC O78 aminopeptidase N YP_007380905.1 1777687 D 1274814 CDS YP_007380906.1 443617050 14481708 complement(1780506..1781273) 1 NC_020163.1 COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; aliphatic sulfonates transport ATP-binding subunit 1781273 ssuB 14481708 ssuB Escherichia coli APEC O78 aliphatic sulfonates transport ATP-binding subunit YP_007380906.1 1780506 R 1274814 CDS YP_007380907.1 443617051 14481709 complement(1781270..1782061) 1 NC_020163.1 COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; alkanesulfonate transporter permease 1782061 14481709 APECO78_08660 Escherichia coli APEC O78 alkanesulfonate transporter permease YP_007380907.1 1781270 R 1274814 CDS YP_007380908.1 443617052 14481710 complement(1782072..1783217) 1 NC_020163.1 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; alkanesulfonate monooxygenase 1783217 14481710 APECO78_08665 Escherichia coli APEC O78 alkanesulfonate monooxygenase YP_007380908.1 1782072 R 1274814 CDS YP_007380909.1 443617053 14481711 complement(1783214..1784173) 1 NC_020163.1 COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; alkanesulfonate transporter subunit 1784173 14481711 APECO78_08670 Escherichia coli APEC O78 alkanesulfonate transporter subunit YP_007380909.1 1783214 R 1274814 CDS YP_007380910.1 443617054 14481712 complement(1784166..1784741) 1 NC_020163.1 COG0431 Predicted flavoprotein; NAD(P)H-dependent FMN reductase 1784741 14481712 APECO78_08675 Escherichia coli APEC O78 NAD(P)H-dependent FMN reductase YP_007380910.1 1784166 R 1274814 CDS YP_007380911.1 443617055 14481713 1785097..1785639 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein 1785639 14481713 APECO78_08680 Escherichia coli APEC O78 fimbrial-like protein YP_007380911.1 1785097 D 1274814 CDS YP_007380912.1 443617056 14481714 1785722..1786423 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; periplasmic pilin chaperone 1786423 14481714 APECO78_08685 Escherichia coli APEC O78 periplasmic pilin chaperone YP_007380912.1 1785722 D 1274814 CDS YP_007380913.1 443617057 14481715 1786448..1789048 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein 1789048 14481715 APECO78_08690 Escherichia coli APEC O78 outer membrane usher protein YP_007380913.1 1786448 D 1274814 CDS YP_007380914.1 443617058 14481716 1789039..1790109 1 NC_020163.1 fimbrial-like adhesin protein 1790109 14481716 APECO78_08695 Escherichia coli APEC O78 fimbrial-like adhesin protein YP_007380914.1 1789039 D 1274814 CDS YP_007380915.1 443617059 14481717 1790121..1790663 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial-like adhesin protein 1790663 14481717 APECO78_08700 Escherichia coli APEC O78 fimbrial-like adhesin protein YP_007380915.1 1790121 D 1274814 CDS YP_007380916.1 443617060 14481718 1790671..1791186 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like adhesin protein 1791186 14481718 APECO78_08705 Escherichia coli APEC O78 putative fimbrial-like adhesin protein YP_007380916.1 1790671 D 1274814 CDS YP_007380917.1 443617061 14481719 1791179..1791889 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; putativi pili assembly chaperone 1791889 14481719 APECO78_08710 Escherichia coli APEC O78 putativi pili assembly chaperone YP_007380917.1 1791179 D 1274814 CDS YP_007380918.1 443617062 14481720 1792000..1793010 1 NC_020163.1 COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 2 1793010 14481720 APECO78_08715 Escherichia coli APEC O78 dihydroorotate dehydrogenase 2 YP_007380918.1 1792000 D 1274814 CDS YP_007380919.1 443617063 14481721 1793184..1793726 1 NC_020163.1 hypothetical protein 1793726 14481721 APECO78_08720 Escherichia coli APEC O78 hypothetical protein YP_007380919.1 1793184 D 1274814 CDS YP_007380920.1 443617064 14481722 complement(1793723..1794832) 1 NC_020163.1 COG3217 Uncharacterized Fe-S protein; 2Fe-2S cluster-containing protein 1794832 14481722 APECO78_08725 Escherichia coli APEC O78 2Fe-2S cluster-containing protein YP_007380920.1 1793723 R 1274814 CDS YP_007380921.1 443617065 14481723 1795076..1797184 1 NC_020163.1 COG0116 Predicted N6-adenine-specific DNA methylase; 23S rRNA m(2)G2445 methyltransferase 1797184 rlmL 14481723 rlmL Escherichia coli APEC O78 23S rRNA m(2)G2445 methyltransferase YP_007380921.1 1795076 D 1274814 CDS YP_007380922.1 443617066 14481724 1797196..1799103 1 NC_020163.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATPase component 1799103 14481724 APECO78_08735 Escherichia coli APEC O78 ABC transporter ATPase component YP_007380922.1 1797196 D 1274814 CDS YP_007380923.1 443617067 14481725 1799233..1800486 1 NC_020163.1 COG2995 Uncharacterized paraquat-inducible protein A; paraquat-inducible membrane protein A 1800486 14481725 APECO78_08740 Escherichia coli APEC O78 paraquat-inducible membrane protein A YP_007380923.1 1799233 D 1274814 CDS YP_007380924.1 443617068 14481726 1800491..1802131 1 NC_020163.1 COG3008 Paraquat-inducible protein B; paraquat-inducible protein B 1802131 14481726 APECO78_08745 Escherichia coli APEC O78 paraquat-inducible protein B YP_007380924.1 1800491 D 1274814 CDS YP_007380925.1 443617069 14481727 1802128..1802691 1 NC_020163.1 COG3009 Uncharacterized protein conserved in bacteria; lipoprotein 1802691 14481727 APECO78_08750 Escherichia coli APEC O78 lipoprotein YP_007380925.1 1802128 D 1274814 CDS YP_007380926.1 443617070 14481728 1802947..1803114 1 NC_020163.1 COG3130 Ribosome modulation factor; ribosome modulation factor 1803114 14481728 APECO78_08755 Escherichia coli APEC O78 ribosome modulation factor YP_007380926.1 1802947 D 1274814 CDS YP_007380927.1 443617071 14481729 complement(1803184..1803702) 1 NC_020163.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; hypothetical protein 1803702 14481729 APECO78_08760 Escherichia coli APEC O78 hypothetical protein YP_007380927.1 1803184 R 1274814 CDS YP_007380928.1 443617072 14481730 complement(1803771..1805531) 1 NC_020163.1 COG1067 Predicted ATP-dependent protease; peptidase, S16 (Lon protease) family protein 1805531 14481730 APECO78_08765 Escherichia coli APEC O78 peptidase, S16 (Lon protease) family protein YP_007380928.1 1803771 R 1274814 CDS YP_007380929.1 443617073 14481731 1805717..1806169 1 NC_020163.1 COG3120 Uncharacterized protein conserved in bacteria; Ter macrodomain organizer matS-binding protein 1806169 14481731 APECO78_08770 Escherichia coli APEC O78 Ter macrodomain organizer matS-binding protein YP_007380929.1 1805717 D 1274814 CDS YP_007380930.1 443617074 14481732 complement(1806245..1807297) 1 NC_020163.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane protein A 1807297 14481732 APECO78_08775 Escherichia coli APEC O78 outer membrane protein A YP_007380930.1 1806245 R 1274814 CDS YP_007380931.1 443617075 14481733 complement(1807654..1808163) 1 NC_020163.1 COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation; SOS cell division inhibitor 1808163 14481733 APECO78_08780 Escherichia coli APEC O78 SOS cell division inhibitor YP_007380931.1 1807654 R 1274814 CDS YP_007380932.1 443617076 14481734 1808382..1809011 1 NC_020163.1 COG3070 Regulator of competence-specific genes; hypothetical protein 1809011 14481734 APECO78_08785 Escherichia coli APEC O78 hypothetical protein YP_007380932.1 1808382 D 1274814 CDS YP_007380933.1 443617077 14481735 complement(1808974..1811136) 1 NC_020163.1 COG1289 Predicted membrane protein; hypothetical protein 1811136 14481735 APECO78_08790 Escherichia coli APEC O78 hypothetical protein YP_007380933.1 1808974 R 1274814 CDS YP_007380934.1 443617078 14481736 complement(1811146..1811592) 1 NC_020163.1 COG3304 Predicted membrane protein; hypothetical protein 1811592 14481736 APECO78_08795 Escherichia coli APEC O78 hypothetical protein YP_007380934.1 1811146 R 1274814 CDS YP_007380935.1 443617079 14481737 1811715..1813769 1 NC_020163.1 COG0210 Superfamily I DNA and RNA helicases; DNA helicase IV 1813769 helD 14481737 helD Escherichia coli APEC O78 DNA helicase IV YP_007380935.1 1811715 D 1274814 CDS YP_007380936.1 443617080 14481738 complement(1813801..1814259) 1 NC_020163.1 COG1803 Methylglyoxal synthase; methylglyoxal synthase 1814259 14481738 APECO78_08805 Escherichia coli APEC O78 methylglyoxal synthase YP_007380936.1 1813801 R 1274814 CDS YP_007380937.1 443617081 14481739 complement(1814355..1815017) 1 NC_020163.1 COG3110 Uncharacterized protein conserved in bacteria; hypothetical protein 1815017 14481739 APECO78_08810 Escherichia coli APEC O78 hypothetical protein YP_007380937.1 1814355 R 1274814 CDS YP_007380938.1 443617082 14481740 1815190..1815603 1 NC_020163.1 COG1832 Predicted CoA-binding protein; CoA-binding protein 1815603 14481740 APECO78_08815 Escherichia coli APEC O78 CoA-binding protein YP_007380938.1 1815190 D 1274814 CDS YP_007380939.1 443617083 14481741 complement(1815648..1815965) 1 NC_020163.1 COG3785 Uncharacterized conserved protein; heat shock protein HspQ 1815965 14481741 APECO78_08820 Escherichia coli APEC O78 heat shock protein HspQ YP_007380939.1 1815648 R 1274814 CDS YP_007380940.1 443617084 14481742 complement(1816023..1817213) 1 NC_020163.1 COG1092 Predicted SAM-dependent methyltransferases; 23S rRNA m(5)C1962 methyltransferase 1817213 14481742 APECO78_08825 Escherichia coli APEC O78 23S rRNA m(5)C1962 methyltransferase YP_007380940.1 1816023 R 1274814 CDS YP_007380941.1 443617085 14481743 1817308..1817586 1 NC_020163.1 COG1254 Acylphosphatases; acylphosphatase 1817586 14481743 APECO78_08830 Escherichia coli APEC O78 acylphosphatase YP_007380941.1 1817308 D 1274814 CDS YP_007380942.1 443617086 14481744 complement(1817583..1817912) 1 NC_020163.1 COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit; sulfur transfer protein TusE 1817912 14481744 APECO78_08835 Escherichia coli APEC O78 sulfur transfer protein TusE YP_007380942.1 1817583 R 1274814 CDS YP_007380943.1 443617087 14481745 complement(1818003..1818662) 1 NC_020163.1 COG0670 Integral membrane protein, interacts with FtsH; HflBKC-binding inner membrane protein 1818662 14481745 APECO78_08840 Escherichia coli APEC O78 HflBKC-binding inner membrane protein YP_007380943.1 1818003 R 1274814 CDS YP_007380944.1 443617088 14484615 1819383..1820501 1 NC_020163.1 COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase-1 small chain 1820501 14484615 APECO78_08845 Escherichia coli APEC O78 hydrogenase-1 small chain YP_007380944.1 1819383 D 1274814 CDS YP_007380945.1 443617089 14481747 1820498..1822291 1 NC_020163.1 COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 1 large subunit 1822291 14481747 APECO78_08850 Escherichia coli APEC O78 hydrogenase 1 large subunit YP_007380945.1 1820498 D 1274814 CDS YP_007380946.1 443617090 14481748 1822310..1823017 1 NC_020163.1 COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; hydrogenase 1 b-type cytochrome subunit 1823017 14481748 APECO78_08855 Escherichia coli APEC O78 hydrogenase 1 b-type cytochrome subunit YP_007380946.1 1822310 D 1274814 CDS YP_007380947.1 443617091 14481749 1823014..1823601 1 NC_020163.1 COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 1 maturation protease 1823601 14481749 APECO78_08860 Escherichia coli APEC O78 hydrogenase 1 maturation protease YP_007380947.1 1823014 D 1274814 CDS YP_007380948.1 443617092 14481750 1823598..1823996 1 NC_020163.1 COG0526 Thiol-disulfide isomerase and thioredoxins; hydrogenase-1 operon protein HyaE 1823996 14481750 APECO78_08865 Escherichia coli APEC O78 hydrogenase-1 operon protein HyaE YP_007380948.1 1823598 D 1274814 CDS YP_007380949.1 443617093 14481751 1823993..1824850 1 NC_020163.1 hydrogenase-1 operon protein HyaF 1824850 14481751 APECO78_08870 Escherichia coli APEC O78 hydrogenase-1 operon protein HyaF YP_007380949.1 1823993 D 1274814 CDS YP_007380950.1 443617094 14481752 1824984..1826528 1 NC_020163.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome bd-II oxidase subunit 1 1826528 14481752 APECO78_08875 Escherichia coli APEC O78 cytochrome bd-II oxidase subunit 1 YP_007380950.1 1824984 D 1274814 CDS YP_007380951.1 443617095 14481753 1826540..1827676 1 NC_020163.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome bd-II oxidase subunit 2 1827676 14481753 APECO78_08880 Escherichia coli APEC O78 cytochrome bd-II oxidase subunit 2 YP_007380951.1 1826540 D 1274814 CDS YP_007380952.1 443617096 14481754 1827689..1827781 1 NC_020163.1 hypothetical protein 1827781 14481754 APECO78_08885 Escherichia coli APEC O78 hypothetical protein YP_007380952.1 1827689 D 1274814 CDS YP_007380953.1 443617097 14481755 1827861..1829159 1 NC_020163.1 phosphoanhydride phosphorylase 1829159 14481755 APECO78_08890 Escherichia coli APEC O78 phosphoanhydride phosphorylase YP_007380953.1 1827861 D 1274814 CDS YP_007380954.1 443617098 14481756 complement(1829279..1831459) 1 NC_020163.1 COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; cryptic autophosphorylating protein tyrosine kinase Etk 1831459 14481756 APECO78_08895 Escherichia coli APEC O78 cryptic autophosphorylating protein tyrosine kinase Etk YP_007380954.1 1829279 R 1274814 CDS YP_007380955.1 443617099 14481757 complement(1831479..1831925) 1 NC_020163.1 COG0394 Protein-tyrosine-phosphatase; phosphotyrosine-protein phosphatase 1831925 14481757 APECO78_08900 Escherichia coli APEC O78 phosphotyrosine-protein phosphatase YP_007380955.1 1831479 R 1274814 CDS YP_007380956.1 443617100 14481758 complement(1831913..1833052) 1 NC_020163.1 COG1596 Periplasmic protein involved in polysaccharide export; putative polysaccharide export protein gfcE precursor 1833052 14481758 APECO78_08905 Escherichia coli APEC O78 putative polysaccharide export protein gfcE precursor YP_007380956.1 1831913 R 1274814 CDS YP_007380957.1 443617101 14481759 complement(1833098..1835194) 1 NC_020163.1 hypothetical protein 1835194 14481759 APECO78_08910 Escherichia coli APEC O78 hypothetical protein YP_007380957.1 1833098 R 1274814 CDS YP_007380958.1 443617102 14481760 complement(1835194..1835940) 1 NC_020163.1 hypothetical protein 1835940 14481760 APECO78_08915 Escherichia coli APEC O78 hypothetical protein YP_007380958.1 1835194 R 1274814 CDS YP_007380959.1 443617103 14481761 complement(1835937..1836581) 1 NC_020163.1 putative outer membrane lipoprotein 1836581 14481761 APECO78_08920 Escherichia coli APEC O78 putative outer membrane lipoprotein YP_007380959.1 1835937 R 1274814 CDS YP_007380960.1 443617104 14481762 complement(1836688..1836993) 1 NC_020163.1 hypothetical protein 1836993 14481762 APECO78_08925 Escherichia coli APEC O78 hypothetical protein YP_007380960.1 1836688 R 1274814 CDS YP_007380961.1 443617105 14481763 complement(1837435..1837647) 1 NC_020163.1 COG1278 Cold shock proteins; cold shock-like protein CspH 1837647 14481763 APECO78_08930 Escherichia coli APEC O78 cold shock-like protein CspH YP_007380961.1 1837435 R 1274814 CDS YP_007380962.1 443617106 14481764 1837933..1838145 1 NC_020163.1 COG1278 Cold shock proteins; cold shock protein CspG 1838145 14481764 APECO78_08935 Escherichia coli APEC O78 cold shock protein CspG YP_007380962.1 1837933 D 1274814 CDS YP_007380963.1 443617107 14481765 1838286..1838549 1 NC_020163.1 cold shock gene 1838549 14481765 APECO78_08940 Escherichia coli APEC O78 cold shock gene YP_007380963.1 1838286 D 1274814 CDS YP_007380964.1 443617108 14481766 1838539..1838712 1 NC_020163.1 regulator of phosphatidylethanolamine synthesis 1838712 14481766 APECO78_08945 Escherichia coli APEC O78 regulator of phosphatidylethanolamine synthesis YP_007380964.1 1838539 D 1274814 CDS YP_007380965.1 443617109 14481767 complement(1838761..1839834) 1 NC_020163.1 COG0348 Polyferredoxin; putative 4Fe-4S membrane protein 1839834 14481767 APECO78_08950 Escherichia coli APEC O78 putative 4Fe-4S membrane protein YP_007380965.1 1838761 R 1274814 CDS YP_007380966.1 443617110 14481768 complement(1839906..1842650) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; hybrid sensory histidine kinase TorS 1842650 14481768 APECO78_08955 Escherichia coli APEC O78 hybrid sensory histidine kinase TorS YP_007380966.1 1839906 R 1274814 CDS YP_007380967.1 443617111 14481769 1842733..1843761 1 NC_020163.1 COG1879 ABC-type sugar transport system, periplasmic component; TMAO reductase system periplasmic protein TorT 1843761 14481769 APECO78_08960 Escherichia coli APEC O78 TMAO reductase system periplasmic protein TorT YP_007380967.1 1842733 D 1274814 CDS YP_007380968.1 443617112 14481770 complement(1843734..1844426) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator TorR 1844426 14481770 APECO78_08965 Escherichia coli APEC O78 DNA-binding transcriptional regulator TorR YP_007380968.1 1843734 R 1274814 CDS YP_007380969.1 443617113 14481771 1844556..1845728 1 NC_020163.1 COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; trimethylamine N-oxide reductase cytochrome c-type subunit 1845728 14481771 APECO78_08970 Escherichia coli APEC O78 trimethylamine N-oxide reductase cytochrome c-type subunit YP_007380969.1 1844556 D 1274814 CDS YP_007380970.1 443617114 14481772 1845728..1848274 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; trimethylamine N-oxide reductase I catalytic subunit 1848274 14481772 APECO78_08975 Escherichia coli APEC O78 trimethylamine N-oxide reductase I catalytic subunit YP_007380970.1 1845728 D 1274814 CDS YP_007380971.1 443617115 14481773 1848271..1848870 1 NC_020163.1 COG3381 Uncharacterized component of anaerobic dehydrogenases; chaperone protein TorD 1848870 torD 14481773 torD Escherichia coli APEC O78 chaperone protein TorD YP_007380971.1 1848271 D 1274814 CDS YP_007380972.1 443617116 14481774 complement(1848963..1849268) 1 NC_020163.1 chaperone-modulator protein CbpM 1849268 14481774 APECO78_08985 Escherichia coli APEC O78 chaperone-modulator protein CbpM YP_007380972.1 1848963 R 1274814 CDS YP_007380973.1 443617117 14481775 complement(1849268..1850188) 1 NC_020163.1 COG2214 DnaJ-class molecular chaperone; curved DNA-binding protein CbpA 1850188 14481775 APECO78_08990 Escherichia coli APEC O78 curved DNA-binding protein CbpA YP_007380973.1 1849268 R 1274814 CDS YP_007380974.1 443617118 14481776 1850448..1851707 1 NC_020163.1 hypothetical protein 1851707 14481776 APECO78_08995 Escherichia coli APEC O78 hypothetical protein YP_007380974.1 1850448 D 1274814 CDS YP_007380975.1 443617119 14481777 1851999..1853240 1 NC_020163.1 glucose-1-phosphatase/inositol phosphatase 1853240 14481777 APECO78_09000 Escherichia coli APEC O78 glucose-1-phosphatase/inositol phosphatase YP_007380975.1 1851999 D 1274814 CDS YP_007380976.1 443617120 14481778 complement(1853278..1853505) 1 NC_020163.1 hypothetical protein 1853505 14481778 APECO78_09005 Escherichia coli APEC O78 hypothetical protein YP_007380976.1 1853278 R 1274814 CDS YP_007380977.1 443617121 14481779 complement(1853526..1854122) 1 NC_020163.1 COG0655 Multimeric flavodoxin WrbA; Trp repressor binding protein 1854122 14481779 APECO78_09010 Escherichia coli APEC O78 Trp repressor binding protein YP_007380977.1 1853526 R 1274814 CDS YP_007380978.1 443617122 14481780 1854495..1854668 1 NC_020163.1 COG3729 General stress protein; Stress-induced protein, KGG, repeat protein 1854668 14481780 APECO78_09015 Escherichia coli APEC O78 Stress-induced protein, KGG, repeat protein YP_007380978.1 1854495 D 1274814 CDS YP_007380979.1 443617123 14481781 complement(1854751..1856079) 1 NC_020163.1 COG2233 Xanthine/uracil permeases; putative transport protein 1856079 14481781 APECO78_09020 Escherichia coli APEC O78 putative transport protein YP_007380979.1 1854751 R 1274814 CDS YP_007380980.1 443617124 14481782 complement(1856100..1856594) 1 NC_020163.1 COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; putative oxidoreductase, flavin:NADH component 1856594 14481782 APECO78_09025 Escherichia coli APEC O78 putative oxidoreductase, flavin:NADH component YP_007380980.1 1856100 R 1274814 CDS YP_007380981.1 443617125 14481783 complement(1856605..1857195) 1 NC_020163.1 COG0778 Nitroreductase; malonic semialdehyde reductase 1857195 14481783 APECO78_09030 Escherichia coli APEC O78 malonic semialdehyde reductase YP_007380981.1 1856605 R 1274814 CDS YP_007380982.1 443617126 14481784 complement(1857205..1858005) 1 NC_020163.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); enzyme of the alternative pyrimidine degradation pathway 1858005 14481784 APECO78_09035 Escherichia coli APEC O78 enzyme of the alternative pyrimidine degradation pathway YP_007380982.1 1857205 R 1274814 CDS YP_007380983.1 443617127 14481785 complement(1858013..1858399) 1 NC_020163.1 COG0251 Putative translation initiation inhibitor, yjgF family; hypothetical protein 1858399 14481785 APECO78_09040 Escherichia coli APEC O78 hypothetical protein YP_007380983.1 1858013 R 1274814 CDS YP_007380984.1 443617128 14481786 complement(1858411..1859103) 1 NC_020163.1 COG1335 Amidases related to nicotinamidase; synthetase 1859103 14481786 APECO78_09045 Escherichia coli APEC O78 synthetase YP_007380984.1 1858411 R 1274814 CDS YP_007380985.1 443617129 14481787 complement(1859103..1860194) 1 NC_020163.1 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; monooxygenase of the alternative pyrimidine degradation pathway 1860194 14481787 APECO78_09050 Escherichia coli APEC O78 monooxygenase of the alternative pyrimidine degradation pathway YP_007380985.1 1859103 R 1274814 CDS YP_007380986.1 443617130 14481788 1860482..1861120 1 NC_020163.1 COG1309 Transcriptional regulator; RutR transcriptional dual regulator 1861120 14481788 APECO78_09055 Escherichia coli APEC O78 RutR transcriptional dual regulator YP_007380986.1 1860482 D 1274814 CDS YP_007380987.1 443617131 14481789 complement(1861160..1865122) 1 NC_020163.1 COG0506 Proline dehydrogenase; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1865122 putA 14481789 putA Escherichia coli APEC O78 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_007380987.1 1861160 R 1274814 CDS YP_007380988.1 443617132 14481790 1865544..1867052 1 NC_020163.1 COG0591 Na+/proline symporter; proline:sodium symporter PutP 1867052 14481790 APECO78_09065 Escherichia coli APEC O78 proline:sodium symporter PutP YP_007380988.1 1865544 D 1274814 CDS YP_007380989.1 443617133 14481791 1867595..1868425 1 NC_020163.1 COG0672 High-affinity Fe2+/Pb2+ permease; high-affinity Fe2+/Pb2+ permease 1868425 14481791 APECO78_09070 Escherichia coli APEC O78 high-affinity Fe2+/Pb2+ permease YP_007380989.1 1867595 D 1274814 CDS YP_007380990.1 443617134 14481792 1868483..1869610 1 NC_020163.1 COG2822 Predicted periplasmic lipoprotein involved in iron transport; inactive ferrous ion transporter periplasmic protein EfeO 1869610 14481792 APECO78_09075 Escherichia coli APEC O78 inactive ferrous ion transporter periplasmic protein EfeO YP_007380990.1 1868483 D 1274814 CDS YP_007380991.1 443617135 14481793 1869616..1870887 1 NC_020163.1 COG2837 Predicted iron-dependent peroxidase; hypothetical protein 1870887 14481793 APECO78_09080 Escherichia coli APEC O78 hypothetical protein YP_007380991.1 1869616 D 1274814 CDS YP_007380992.1 443617136 14481794 1871506..1872294 1 NC_020163.1 COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; hypothetical protein 1872294 14481794 APECO78_09085 Escherichia coli APEC O78 hypothetical protein YP_007380992.1 1871506 D 1274814 CDS YP_007380993.1 443617137 14481795 complement(1872344..1872757) 1 NC_020163.1 PGA biosynthesis protein 1872757 14481795 APECO78_09090 Escherichia coli APEC O78 PGA biosynthesis protein YP_007380993.1 1872344 R 1274814 CDS YP_007380994.1 443617138 14481796 complement(1872759..1874084) 1 NC_020163.1 COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; N-glycosyltransferase 1874084 14481796 APECO78_09095 Escherichia coli APEC O78 N-glycosyltransferase YP_007380994.1 1872759 R 1274814 CDS YP_007380995.1 443617139 14481797 complement(1874077..1876095) 1 NC_020163.1 COG0726 Predicted xylanase/chitin deacetylase; outer membrane N-deacetylase 1876095 14481797 APECO78_09100 Escherichia coli APEC O78 outer membrane N-deacetylase YP_007380995.1 1874077 R 1274814 CDS YP_007380996.1 443617140 14481798 complement(1876104..1878527) 1 NC_020163.1 COG0457 FOG: TPR repeat; outer membrane protein PgaA 1878527 14481798 APECO78_09105 Escherichia coli APEC O78 outer membrane protein PgaA YP_007380996.1 1876104 R 1274814 CDS YP_007380997.1 443617141 14481799 1879114..1880472 1 NC_020163.1 COG2199 FOG: GGDEF domain; diguanylate cyclase 1880472 14481799 APECO78_09110 Escherichia coli APEC O78 diguanylate cyclase YP_007380997.1 1879114 D 1274814 CDS YP_007380998.1 443617142 14481800 complement(1880513..1881379) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS3 element transposase 1881379 14481800 APECO78_09115 Escherichia coli APEC O78 IS3 element transposase YP_007380998.1 1880513 R 1274814 CDS YP_007380999.1 443617143 14481801 complement(1881376..1881675) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS3 element protein InsE 1881675 14481801 APECO78_09120 Escherichia coli APEC O78 IS3 element protein InsE YP_007380999.1 1881376 R 1274814 CDS YP_007381000.1 443617144 14481802 1881778..1882269 1 NC_020163.1 COG0331 (acyl-carrier-protein) S-malonyltransferase; hypothetical protein 1882269 14481802 APECO78_09125 Escherichia coli APEC O78 hypothetical protein YP_007381000.1 1881778 D 1274814 CDS YP_007381001.1 443617145 14481803 1882266..1883252 1 NC_020163.1 inner membrane protein 1883252 14481803 APECO78_09130 Escherichia coli APEC O78 inner membrane protein YP_007381001.1 1882266 D 1274814 CDS YP_007381002.1 443617146 14484616 1883947..1884885 1 NC_020163.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; 2-ketoacid reductase 1884885 14484616 APECO78_09135 Escherichia coli APEC O78 2-ketoacid reductase YP_007381002.1 1883947 D 1274814 CDS YP_007381003.1 443617147 14481805 1884940..1885677 1 NC_020163.1 COG1387 Histidinol phosphatase and related hydrolases of the PHP family; hydrolase 1885677 14481805 APECO78_09140 Escherichia coli APEC O78 hydrolase YP_007381003.1 1884940 D 1274814 CDS YP_007381004.1 443617148 14481806 1885701..1886255 1 NC_020163.1 COG3381 Uncharacterized component of anaerobic dehydrogenases; hypothetical protein 1886255 14481806 APECO78_09145 Escherichia coli APEC O78 hypothetical protein YP_007381004.1 1885701 D 1274814 CDS YP_007381005.1 443617149 14481807 1886357..1886848 1 NC_020163.1 inner membrane protein 1886848 14481807 APECO78_09150 Escherichia coli APEC O78 inner membrane protein YP_007381005.1 1886357 D 1274814 CDS YP_007381006.1 443617150 14481808 complement(1886912..1887745) 1 NC_020163.1 COG1462 Uncharacterized protein involved in formation of curli polymers; curli production assembly/transport protein CsgG 1887745 14481808 APECO78_09155 Escherichia coli APEC O78 curli production assembly/transport protein CsgG YP_007381006.1 1886912 R 1274814 CDS YP_007381007.1 443617151 14481809 complement(1887772..1888188) 1 NC_020163.1 curli assembly protein CsgF 1888188 14481809 APECO78_09160 Escherichia coli APEC O78 curli assembly protein CsgF YP_007381007.1 1887772 R 1274814 CDS YP_007381008.1 443617152 14481810 complement(1888213..1888602) 1 NC_020163.1 COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; curli assembly protein CsgE 1888602 14481810 APECO78_09165 Escherichia coli APEC O78 curli assembly protein CsgE YP_007381008.1 1888213 R 1274814 CDS YP_007381009.1 443617153 14481811 complement(1888607..1889257) 1 NC_020163.1 COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional regulator CsgD 1889257 14481811 APECO78_09170 Escherichia coli APEC O78 DNA-binding transcriptional regulator CsgD YP_007381009.1 1888607 R 1274814 CDS YP_007381010.1 443617154 14481812 1890011..1890466 1 NC_020163.1 curlin minor subunit CsgB 1890466 14481812 APECO78_09175 Escherichia coli APEC O78 curlin minor subunit CsgB YP_007381010.1 1890011 D 1274814 CDS YP_007381011.1 443617155 14481813 1890507..1890962 1 NC_020163.1 major curlin subunit 1890962 14481813 APECO78_09180 Escherichia coli APEC O78 major curlin subunit YP_007381011.1 1890507 D 1274814 CDS YP_007381012.1 443617156 14481814 1891021..1891353 1 NC_020163.1 curli assembly protein CsgC 1891353 csgC 14481814 csgC Escherichia coli APEC O78 curli assembly protein CsgC YP_007381012.1 1891021 D 1274814 CDS YP_007381013.1 443617157 14481815 1891474..1891785 1 NC_020163.1 COG0551 Zn-finger domain associated with topoisomerase type I; hypothetical protein 1891785 14481815 APECO78_09190 Escherichia coli APEC O78 hypothetical protein YP_007381013.1 1891474 D 1274814 CDS YP_007381014.1 443617158 14481816 1891880..1892413 1 NC_020163.1 COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; RNase III inhibitor 1892413 14481816 APECO78_09195 Escherichia coli APEC O78 RNase III inhibitor YP_007381014.1 1891880 D 1274814 CDS YP_007381015.1 443617159 14481817 1892415..1893836 1 NC_020163.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; Putative synthase 1893836 14481817 APECO78_09200 Escherichia coli APEC O78 Putative synthase YP_007381015.1 1892415 D 1274814 CDS YP_007381016.1 443617160 14481818 complement(1893844..1895001) 1 NC_020163.1 glucans biosynthesis protein 1895001 opgC 14481818 opgC Escherichia coli APEC O78 glucans biosynthesis protein YP_007381016.1 1893844 R 1274814 CDS YP_007381017.1 443617161 14481819 1895395..1896930 1 NC_020163.1 COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein G 1896930 mdoG 14481819 mdoG Escherichia coli APEC O78 glucan biosynthesis protein G YP_007381017.1 1895395 D 1274814 CDS YP_007381018.1 443617162 14481820 1896923..1899466 1 NC_020163.1 COG2943 Membrane glycosyltransferase; glucosyltransferase MdoH 1899466 14481820 APECO78_09215 Escherichia coli APEC O78 glucosyltransferase MdoH YP_007381018.1 1896923 D 1274814 CDS YP_007381019.1 443617163 14481821 1899639..1899866 1 NC_020163.1 COG5645 Predicted periplasmic lipoprotein; hypothetical protein 1899866 14481821 APECO78_09220 Escherichia coli APEC O78 hypothetical protein YP_007381019.1 1899639 D 1274814 CDS YP_007381020.1 443617164 14481822 complement(1899867..1900241) 1 NC_020163.1 secY/secA suppressor protein 1900241 14481822 APECO78_09225 Escherichia coli APEC O78 secY/secA suppressor protein YP_007381020.1 1899867 R 1274814 CDS YP_007381021.1 443617165 14481823 complement(1900324..1901550) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein mdtG 1901550 14481823 APECO78_09230 Escherichia coli APEC O78 multidrug resistance protein mdtG YP_007381021.1 1900324 R 1274814 CDS YP_007381022.1 443617166 14481824 complement(1901722..1902642) 1 NC_020163.1 COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase 1902642 14481824 APECO78_09235 Escherichia coli APEC O78 lipid A biosynthesis lauroyl acyltransferase YP_007381022.1 1901722 R 1274814 CDS YP_007381023.1 443617167 14481825 1902867..1903919 1 NC_020163.1 COG1054 Predicted sulfurtransferase; rhodanese-related sulfurtransferase 1903919 14481825 APECO78_09240 Escherichia coli APEC O78 rhodanese-related sulfurtransferase YP_007381023.1 1902867 D 1274814 CDS YP_007381024.1 443617168 14481826 complement(1903961..1904536) 1 NC_020163.1 COG2353 Uncharacterized conserved protein; hypothetical protein 1904536 14481826 APECO78_09245 Escherichia coli APEC O78 hypothetical protein YP_007381024.1 1903961 R 1274814 CDS YP_007381025.1 443617169 14481827 complement(1904540..1905106) 1 NC_020163.1 COG3038 Cytochrome B561; cytochrome 1905106 14481827 APECO78_09250 Escherichia coli APEC O78 cytochrome YP_007381025.1 1904540 R 1274814 CDS YP_007381026.1 443617170 14481828 complement(1905367..1905480) 1 NC_020163.1 hypothetical protein 1905480 14481828 APECO78_09255 Escherichia coli APEC O78 hypothetical protein YP_007381026.1 1905367 R 1274814 CDS YP_007381027.1 443617171 14481829 complement(1905528..1906646) 1 NC_020163.1 COG0665 Glycine/D-amino acid oxidases (deaminating); N-methyltryptophan oxidase 1906646 solA 14481829 solA Escherichia coli APEC O78 N-methyltryptophan oxidase YP_007381027.1 1905528 R 1274814 CDS YP_007381028.1 443617172 14481830 complement(1906761..1907015) 1 NC_020163.1 biofilm formation regulatory protein BssS 1907015 14481830 APECO78_09265 Escherichia coli APEC O78 biofilm formation regulatory protein BssS YP_007381028.1 1906761 R 1274814 CDS YP_007381029.1 443617173 14481831 complement(1907305..1907550) 1 NC_020163.1 DNA-damage-inducible protein I 1907550 14481831 APECO78_09270 Escherichia coli APEC O78 DNA-damage-inducible protein I YP_007381029.1 1907305 R 1274814 CDS YP_007381030.1 443617174 14481832 complement(1907624..1908670) 1 NC_020163.1 COG0418 Dihydroorotase; dihydroorotase 1908670 14481832 APECO78_09275 Escherichia coli APEC O78 dihydroorotase YP_007381030.1 1907624 R 1274814 CDS YP_007381031.1 443617175 14481833 complement(1908776..1909336) 1 NC_020163.1 putative lipoprotein yceB 1909336 14481833 APECO78_09280 Escherichia coli APEC O78 putative lipoprotein yceB YP_007381031.1 1908776 R 1274814 CDS YP_007381032.1 443617176 14481834 complement(1909470..1910117) 1 NC_020163.1 COG2999 Glutaredoxin 2; glutaredoxin 1910117 14481834 APECO78_09285 Escherichia coli APEC O78 glutaredoxin YP_007381032.1 1909470 R 1274814 CDS YP_007381033.1 443617177 14481835 complement(1910181..1911389) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative transport protein 1911389 14481835 APECO78_09290 Escherichia coli APEC O78 putative transport protein YP_007381033.1 1910181 R 1274814 CDS YP_007381034.1 443617178 14481836 1911625..1912209 1 NC_020163.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-S5-alanine N-acetyltransferase 1912209 14481836 APECO78_09295 Escherichia coli APEC O78 ribosomal-protein-S5-alanine N-acetyltransferase YP_007381034.1 1911625 D 1274814 CDS YP_007381035.1 443617179 14481837 1912220..1912867 1 NC_020163.1 COG3132 Uncharacterized protein conserved in bacteria; hypothetical protein 1912867 14481837 APECO78_09300 Escherichia coli APEC O78 hypothetical protein YP_007381035.1 1912220 D 1274814 CDS YP_007381036.1 443617180 14481838 1912869..1913792 1 NC_020163.1 COG0673 Predicted dehydrogenases and related proteins; oxidoreductase 1913792 14481838 APECO78_09305 Escherichia coli APEC O78 oxidoreductase YP_007381036.1 1912869 D 1274814 CDS YP_007381037.1 443617181 14481839 1913902..1915437 1 NC_020163.1 COG0728 Uncharacterized membrane protein, putative virulence factor; hypothetical protein 1915437 14481839 APECO78_09310 Escherichia coli APEC O78 hypothetical protein YP_007381037.1 1913902 D 1274814 CDS YP_007381038.1 443617182 14481840 complement(1915477..1915893) 1 NC_020163.1 COG3418 Flagellar biosynthesis/type III secretory pathway chaperone; flagella synthesis chaperone protein FlgN 1915893 14481840 APECO78_09315 Escherichia coli APEC O78 flagella synthesis chaperone protein FlgN YP_007381038.1 1915477 R 1274814 CDS YP_007381039.1 443617183 14481841 complement(1915898..1916191) 1 NC_020163.1 COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor); anti-sigma-28 factor FlgM 1916191 14481841 APECO78_09320 Escherichia coli APEC O78 anti-sigma-28 factor FlgM YP_007381039.1 1915898 R 1274814 CDS YP_007381040.1 443617184 14481842 complement(1916267..1916926) 1 NC_020163.1 COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA 1916926 flgA 14481842 flgA Escherichia coli APEC O78 flagellar basal body P-ring biosynthesis protein FlgA YP_007381040.1 1916267 R 1274814 CDS YP_007381041.1 443617185 14481843 1917081..1917497 1 NC_020163.1 COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB 1917497 flgB 14481843 flgB Escherichia coli APEC O78 flagellar basal body rod protein FlgB YP_007381041.1 1917081 D 1274814 CDS YP_007381042.1 443617186 14481844 1917501..1917905 1 NC_020163.1 COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC 1917905 14481844 APECO78_09335 Escherichia coli APEC O78 flagellar basal body rod protein FlgC YP_007381042.1 1917501 D 1274814 CDS YP_007381043.1 443617187 14481845 1917917..1918612 1 NC_020163.1 COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 1918612 flgD 14481845 flgD Escherichia coli APEC O78 flagellar basal body rod modification protein YP_007381043.1 1917917 D 1274814 CDS YP_007381044.1 443617188 14481846 1918637..1919842 1 NC_020163.1 COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 1919842 14481846 APECO78_09345 Escherichia coli APEC O78 flagellar hook protein FlgE YP_007381044.1 1918637 D 1274814 CDS YP_007381045.1 443617189 14481847 1919862..1920617 1 NC_020163.1 COG4787 Flagellar basal body rod protein; flagellar basal body rod protein FlgF 1920617 14481847 APECO78_09350 Escherichia coli APEC O78 flagellar basal body rod protein FlgF YP_007381045.1 1919862 D 1274814 CDS YP_007381046.1 443617190 14481848 1920789..1921571 1 NC_020163.1 COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG 1921571 14481848 APECO78_09355 Escherichia coli APEC O78 flagellar basal body rod protein FlgG YP_007381046.1 1920789 D 1274814 CDS YP_007381047.1 443617191 14481849 1921624..1922322 1 NC_020163.1 COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 1922322 14481849 APECO78_09360 Escherichia coli APEC O78 flagellar basal body L-ring protein YP_007381047.1 1921624 D 1274814 CDS YP_007381048.1 443617192 14481850 1922334..1923431 1 NC_020163.1 COG1706 Flagellar basal-body P-ring protein; flagellar basal-body P-ring protein FlgI 1923431 14481850 APECO78_09365 Escherichia coli APEC O78 flagellar basal-body P-ring protein FlgI YP_007381048.1 1922334 D 1274814 CDS YP_007381049.1 443617193 14481851 1923431..1924372 1 NC_020163.1 COG3951 Rod binding protein; flagellar rod assembly protein/muramidase FlgJ 1924372 14481851 APECO78_09370 Escherichia coli APEC O78 flagellar rod assembly protein/muramidase FlgJ YP_007381049.1 1923431 D 1274814 CDS YP_007381050.1 443617194 14481852 1924438..1926081 1 NC_020163.1 COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK 1926081 flgK 14481852 flgK Escherichia coli APEC O78 flagellar hook-associated protein FlgK YP_007381050.1 1924438 D 1274814 CDS YP_007381051.1 443617195 14481853 1926093..1927046 1 NC_020163.1 COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL 1927046 14481853 APECO78_09380 Escherichia coli APEC O78 flagellar hook-associated protein FlgL YP_007381051.1 1926093 D 1274814 CDS YP_007381052.1 443617196 14481854 complement(1927243..1930428) 1 NC_020163.1 COG1530 Ribonucleases G and E; ribonuclease E 1930428 rne 14481854 rne Escherichia coli APEC O78 ribonuclease E YP_007381052.1 1927243 R 1274814 CDS YP_007381053.1 443617197 14481855 1931001..1931960 1 NC_020163.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridylate synthase C 1931960 14481855 APECO78_09390 Escherichia coli APEC O78 23S rRNA pseudouridylate synthase C YP_007381053.1 1931001 D 1274814 CDS YP_007381054.1 443617198 14481856 complement(1932072..1932656) 1 NC_020163.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein 1932656 14481856 APECO78_09395 Escherichia coli APEC O78 Maf-like protein YP_007381054.1 1932072 R 1274814 CDS YP_007381055.1 443617199 14481857 1932855..1933376 1 NC_020163.1 COG1399 Predicted metal-binding, possibly nucleic acid-binding protein; hypothetical protein 1933376 14481857 APECO78_09400 Escherichia coli APEC O78 hypothetical protein YP_007381055.1 1932855 D 1274814 CDS YP_007381056.1 443617200 14481858 1933428..1933601 1 NC_020163.1 COG0333 Ribosomal protein L32; 50S ribosomal protein L32 1933601 14481858 APECO78_09405 Escherichia coli APEC O78 50S ribosomal protein L32 YP_007381056.1 1933428 D 1274814 CDS YP_007381057.1 443617201 14481859 1933682..1934752 1 NC_020163.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme; putative glycerol-3-phosphate acyltransferase PlsX 1934752 14481859 APECO78_09410 Escherichia coli APEC O78 putative glycerol-3-phosphate acyltransferase PlsX YP_007381057.1 1933682 D 1274814 CDS YP_007381058.1 443617202 14481860 1934820..1935773 1 NC_020163.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-(acyl carrier protein) synthase III 1935773 14481860 APECO78_09415 Escherichia coli APEC O78 3-oxoacyl-(acyl carrier protein) synthase III YP_007381058.1 1934820 D 1274814 CDS YP_007381059.1 443617203 14481861 1935789..1936718 1 NC_020163.1 COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl-CoA-[acyl-carrier-protein] transacylase 1936718 14481861 APECO78_09420 Escherichia coli APEC O78 malonyl-CoA-[acyl-carrier-protein] transacylase YP_007381059.1 1935789 D 1274814 CDS YP_007381060.1 443617204 14481862 1936731..1937465 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-(acyl-carrier-protein) reductase 1937465 fabG 14481862 fabG Escherichia coli APEC O78 3-ketoacyl-(acyl-carrier-protein) reductase YP_007381060.1 1936731 D 1274814 CDS YP_007381061.1 443617205 14481863 1937676..1937912 1 NC_020163.1 COG0236 Acyl carrier protein; hypothetical protein 1937912 14481863 APECO78_09430 Escherichia coli APEC O78 hypothetical protein YP_007381061.1 1937676 D 1274814 CDS YP_007381062.1 443617206 14481864 1938000..1939241 1 NC_020163.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase II 1939241 14481864 APECO78_09435 Escherichia coli APEC O78 3-oxoacyl-(acyl carrier protein) synthase II YP_007381062.1 1938000 D 1274814 CDS YP_007381063.1 443617207 14481865 1939361..1940170 1 NC_020163.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; 4-amino-4-deoxychorismate lyase 1940170 14481865 APECO78_09440 Escherichia coli APEC O78 4-amino-4-deoxychorismate lyase YP_007381063.1 1939361 D 1274814 CDS YP_007381064.1 443617208 14481866 1940173..1941195 1 NC_020163.1 COG1559 Predicted periplasmic solute-binding protein; putative thymidylate kinase 1941195 14481866 APECO78_09445 Escherichia coli APEC O78 putative thymidylate kinase YP_007381064.1 1940173 D 1274814 CDS YP_007381065.1 443617209 14481867 1941185..1941826 1 NC_020163.1 COG0125 Thymidylate kinase; thymidylate kinase 1941826 14481867 APECO78_09450 Escherichia coli APEC O78 thymidylate kinase YP_007381065.1 1941185 D 1274814 CDS YP_007381066.1 443617210 14481868 1941823..1942827 1 NC_020163.1 COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 1942827 14481868 APECO78_09455 Escherichia coli APEC O78 DNA polymerase III subunit delta' YP_007381066.1 1941823 D 1274814 CDS YP_007381067.1 443617211 14481869 1942838..1943635 1 NC_020163.1 COG0084 Mg-dependent DNase; DNAse 1943635 14481869 APECO78_09460 Escherichia coli APEC O78 DNAse YP_007381067.1 1942838 D 1274814 CDS YP_007381068.1 443617212 14481870 1943930..1945363 1 NC_020163.1 COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system glucose-specific transporter subunit IIBC 1945363 14481870 APECO78_09465 Escherichia coli APEC O78 PTS system glucose-specific transporter subunit IIBC YP_007381068.1 1943930 D 1274814 CDS YP_007381069.1 443617213 14481871 complement(1945423..1947612) 1 NC_020163.1 COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; ferric-rhodotorulic acid outer membrane transporter 1947612 14481871 APECO78_09470 Escherichia coli APEC O78 ferric-rhodotorulic acid outer membrane transporter YP_007381069.1 1945423 R 1274814 CDS YP_007381070.1 443617214 14481872 1947946..1948305 1 NC_020163.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; purine nucleoside phosphoramidase 1948305 14481872 APECO78_09475 Escherichia coli APEC O78 purine nucleoside phosphoramidase YP_007381070.1 1947946 D 1274814 CDS YP_007381071.1 443617215 14481873 1948308..1948685 1 NC_020163.1 COG5633 Predicted periplasmic lipoprotein; hypothetical protein 1948685 14481873 APECO78_09480 Escherichia coli APEC O78 hypothetical protein YP_007381071.1 1948308 D 1274814 CDS YP_007381072.1 443617216 14481874 1948699..1949340 1 NC_020163.1 COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family); hypothetical protein 1949340 14481874 APECO78_09485 Escherichia coli APEC O78 hypothetical protein YP_007381072.1 1948699 D 1274814 CDS YP_007381073.1 443617217 14481875 1949321..1950145 1 NC_020163.1 COG0510 Predicted choline kinase involved in LPS biosynthesis; thiamine kinase 1950145 thiK 14481875 thiK Escherichia coli APEC O78 thiamine kinase YP_007381073.1 1949321 D 1274814 CDS YP_007381074.1 443617218 14481876 1950156..1951181 1 NC_020163.1 COG1472 Beta-glucosidase-related glycosidases; beta-hexosaminidase 1951181 14481876 APECO78_09495 Escherichia coli APEC O78 beta-hexosaminidase YP_007381074.1 1950156 D 1274814 CDS YP_007381075.1 443617219 14481877 1951204..1951746 1 NC_020163.1 COG3150 Predicted esterase; hypothetical protein 1951746 14481877 APECO78_09500 Escherichia coli APEC O78 hypothetical protein YP_007381075.1 1951204 D 1274814 CDS YP_007381076.1 443617220 14481878 1952154..1953458 1 NC_020163.1 COG1252 NADH dehydrogenase, FAD-containing subunit; respiratory NADH dehydrogenase 2/cupric reductase 1953458 14481878 APECO78_09505 Escherichia coli APEC O78 respiratory NADH dehydrogenase 2/cupric reductase YP_007381076.1 1952154 D 1274814 CDS YP_007381077.1 443617221 14481879 1953685..1954224 1 NC_020163.1 COG3134 Predicted outer membrane lipoprotein; hypothetical protein 1954224 14481879 APECO78_09510 Escherichia coli APEC O78 hypothetical protein YP_007381077.1 1953685 D 1274814 CDS YP_007381078.1 443617222 14481880 complement(1954286..1954918) 1 NC_020163.1 COG1309 Transcriptional regulator; hypothetical protein 1954918 14481880 APECO78_09515 Escherichia coli APEC O78 hypothetical protein YP_007381078.1 1954286 R 1274814 CDS YP_007381079.1 443617223 14481881 1955159..1955416 1 NC_020163.1 hypothetical protein 1955416 14481881 APECO78_09520 Escherichia coli APEC O78 hypothetical protein YP_007381079.1 1955159 D 1274814 CDS YP_007381080.1 443617224 14481882 complement(1955499..1956461) 1 NC_020163.1 COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase 1956461 14481882 APECO78_09525 Escherichia coli APEC O78 L,D-transpeptidase YP_007381080.1 1955499 R 1274814 CDS YP_007381081.1 443617225 14481883 complement(1956605..1960051) 1 NC_020163.1 COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor 1960051 14481883 APECO78_09530 Escherichia coli APEC O78 transcription-repair coupling factor YP_007381081.1 1956605 R 1274814 CDS YP_007381082.1 443617226 14481884 complement(1960179..1961252) 1 NC_020163.1 COG4763 Predicted membrane protein; putative inner membrane protein 1961252 14481884 APECO78_09535 Escherichia coli APEC O78 putative inner membrane protein YP_007381082.1 1960179 R 1274814 CDS YP_007381083.1 443617227 14481885 1961514..1962713 1 NC_020163.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolC 1962713 14481885 APECO78_09540 Escherichia coli APEC O78 outer membrane-specific lipoprotein transporter subunit LolC YP_007381083.1 1961514 D 1274814 CDS YP_007381084.1 443617228 14481886 1962706..1963407 1 NC_020163.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; lipoprotein transporter ATP-binding subunit 1963407 14481886 APECO78_09545 Escherichia coli APEC O78 lipoprotein transporter ATP-binding subunit YP_007381084.1 1962706 D 1274814 CDS YP_007381085.1 443617229 14481887 1963407..1964651 1 NC_020163.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component; outer membrane-specific lipoprotein transporter subunit LolE 1964651 14481887 APECO78_09550 Escherichia coli APEC O78 outer membrane-specific lipoprotein transporter subunit LolE YP_007381085.1 1963407 D 1274814 CDS YP_007381086.1 443617230 14481888 1964680..1965591 1 NC_020163.1 COG1940 Transcriptional regulator/sugar kinase; N-acetyl-D-glucosamine kinase 1965591 14481888 APECO78_09555 Escherichia coli APEC O78 N-acetyl-D-glucosamine kinase YP_007381086.1 1964680 D 1274814 CDS YP_007381087.1 443617231 14481889 1965607..1966428 1 NC_020163.1 COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 1966428 14481889 APECO78_09560 Escherichia coli APEC O78 NAD-dependent deacetylase YP_007381087.1 1965607 D 1274814 CDS YP_007381088.1 443617232 14481890 complement(1966567..1967355) 1 NC_020163.1 inner membrane protein 1967355 14481890 APECO78_09565 Escherichia coli APEC O78 inner membrane protein YP_007381088.1 1966567 R 1274814 CDS YP_007381089.1 443617233 14481891 complement(1967352..1967813) 1 NC_020163.1 inner membrane protein 1967813 14481891 APECO78_09570 Escherichia coli APEC O78 inner membrane protein YP_007381089.1 1967352 R 1274814 CDS YP_007381090.1 443617234 14481892 complement(1967871..1968917) 1 NC_020163.1 COG0687 Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine-binding periplasmic protein precursor 1968917 14481892 APECO78_09575 Escherichia coli APEC O78 spermidine/putrescine-binding periplasmic protein precursor YP_007381090.1 1967871 R 1274814 CDS YP_007381091.1 443617235 14481893 complement(1968914..1969708) 1 NC_020163.1 COG1177 ABC-type spermidine/putrescine transport system, permease component II; spermidine/putrescine ABC transporter permease 1969708 14481893 APECO78_09580 Escherichia coli APEC O78 spermidine/putrescine ABC transporter permease YP_007381091.1 1968914 R 1274814 CDS YP_007381092.1 443617236 14481894 complement(1969705..1970562) 1 NC_020163.1 COG1176 ABC-type spermidine/putrescine transport system, permease component I; spermidine/putrescine ABC transporter membrane protein 1970562 potB 14481894 potB Escherichia coli APEC O78 spermidine/putrescine ABC transporter membrane protein YP_007381092.1 1969705 R 1274814 CDS YP_007381093.1 443617237 14481895 complement(1970546..1971682) 1 NC_020163.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putrescine/spermidine ABC transporter ATPase 1971682 14481895 APECO78_09590 Escherichia coli APEC O78 putrescine/spermidine ABC transporter ATPase YP_007381093.1 1970546 R 1274814 CDS YP_007381094.1 443617238 14481896 1971932..1973158 1 NC_020163.1 COG2195 Di- and tripeptidases; peptidase T 1973158 14481896 APECO78_09595 Escherichia coli APEC O78 peptidase T YP_007381094.1 1971932 D 1274814 CDS YP_007381095.1 443617239 14481897 complement(1973207..1974328) 1 NC_020163.1 COG2850 Uncharacterized conserved protein; hypothetical protein 1974328 14481897 APECO78_09600 Escherichia coli APEC O78 hypothetical protein YP_007381095.1 1973207 R 1274814 CDS YP_007381096.1 443617240 14481898 complement(1974404..1975864) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; sensor protein PhoQ 1975864 14481898 APECO78_09605 Escherichia coli APEC O78 sensor protein PhoQ YP_007381096.1 1974404 R 1274814 CDS YP_007381097.1 443617241 14481899 complement(1975864..1976535) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator PhoP 1976535 14481899 APECO78_09610 Escherichia coli APEC O78 DNA-binding transcriptional regulator PhoP YP_007381097.1 1975864 R 1274814 CDS YP_007381098.1 443617242 14481900 complement(1976704..1978074) 1 NC_020163.1 COG0015 Adenylosuccinate lyase; adenylosuccinate lyase 1978074 14481900 APECO78_09615 Escherichia coli APEC O78 adenylosuccinate lyase YP_007381098.1 1976704 R 1274814 CDS YP_007381099.1 443617243 14481901 complement(1978078..1978719) 1 NC_020163.1 COG2915 Uncharacterized protein involved in purine metabolism; hypothetical protein 1978719 14481901 APECO78_09620 Escherichia coli APEC O78 hypothetical protein YP_007381099.1 1978078 R 1274814 CDS YP_007381100.1 443617244 14481902 complement(1978755..1979861) 1 NC_020163.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; trmU 1979861 14481902 APECO78_09625 Escherichia coli APEC O78 trmU YP_007381100.1 1978755 R 1274814 CDS YP_007381101.1 443617245 14481903 complement(1979915..1980376) 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; putative phosphohydrolase 1980376 14481903 APECO78_09630 Escherichia coli APEC O78 putative phosphohydrolase YP_007381101.1 1979915 R 1274814 CDS YP_007381102.1 443617246 14481904 complement(1980386..1981039) 1 NC_020163.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridine synthase E 1981039 14481904 APECO78_09635 Escherichia coli APEC O78 23S rRNA pseudouridine synthase E YP_007381102.1 1980386 R 1274814 CDS YP_007381103.1 443617247 14481905 1981211..1982461 1 NC_020163.1 COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 1982461 14481905 APECO78_09640 Escherichia coli APEC O78 isocitrate dehydrogenase YP_007381103.1 1981211 D 1274814 CDS YP_007381104.1 443617248 14481906 complement(1982564..1982887) 1 NC_020163.1 anti-adapter protein IraM 1982887 14481906 APECO78_09645 Escherichia coli APEC O78 anti-adapter protein IraM YP_007381104.1 1982564 R 1274814 CDS YP_007381105.1 443617249 14481907 complement(1983583..1983987) 1 NC_020163.1 COG5562 Phage envelope protein; hypothetical protein 1983987 14481907 APECO78_09650 Escherichia coli APEC O78 hypothetical protein YP_007381105.1 1983583 R 1274814 CDS YP_007381106.1 443617250 14481908 complement(1984208..1984939) 1 NC_020163.1 COG0789 Predicted transcriptional regulators; MerR family transcriptional regulator 1984939 14481908 APECO78_09655 Escherichia coli APEC O78 MerR family transcriptional regulator YP_007381106.1 1984208 R 1274814 CDS YP_007381107.1 443617251 14481909 complement(1985144..1986355) 1 NC_020163.1 COG2200 FOG: EAL domain; putative FAD-binding phosphodiesterase 1986355 14481909 APECO78_09660 Escherichia coli APEC O78 putative FAD-binding phosphodiesterase YP_007381107.1 1985144 R 1274814 CDS YP_007381108.1 443617252 14481910 1986669..1986905 1 NC_020163.1 hypothetical protein 1986905 14481910 APECO78_09665 Escherichia coli APEC O78 hypothetical protein YP_007381108.1 1986669 D 1274814 CDS YP_007381109.1 443617253 14481911 1986948..1987220 1 NC_020163.1 hypothetical protein 1987220 14481911 APECO78_09670 Escherichia coli APEC O78 hypothetical protein YP_007381109.1 1986948 D 1274814 CDS YP_007381110.1 443617254 14481912 1987249..1987515 1 NC_020163.1 hypothetical protein 1987515 14481912 APECO78_09675 Escherichia coli APEC O78 hypothetical protein YP_007381110.1 1987249 D 1274814 CDS YP_007381111.1 443617255 14481913 1987628..1987876 1 NC_020163.1 hypothetical protein 1987876 14481913 APECO78_09680 Escherichia coli APEC O78 hypothetical protein YP_007381111.1 1987628 D 1274814 CDS YP_007381112.1 443617256 14481914 1988208..1989731 1 NC_020163.1 COG2200 FOG: EAL domain; hypothetical protein 1989731 14481914 APECO78_09685 Escherichia coli APEC O78 hypothetical protein YP_007381112.1 1988208 D 1274814 CDS YP_007381113.1 443617257 14481915 1989863..1990081 1 NC_020163.1 hypothetical protein 1990081 14481915 APECO78_09690 Escherichia coli APEC O78 hypothetical protein YP_007381113.1 1989863 D 1274814 CDS YP_007381114.1 443617258 14481916 1990481..1990690 1 NC_020163.1 hypothetical protein 1990690 14481916 APECO78_09695 Escherichia coli APEC O78 hypothetical protein YP_007381114.1 1990481 D 1274814 CDS YP_007381115.1 443617259 14481917 1990807..1993128 1 NC_020163.1 COG3468 Type V secretory pathway, adhesin AidA; putative outer membrane autotransporter barrel pectin lyase fold protein 1993128 14481917 APECO78_09700 Escherichia coli APEC O78 putative outer membrane autotransporter barrel pectin lyase fold protein YP_007381115.1 1990807 D 1274814 CDS YP_007381116.1 443617260 14481918 complement(1993185..1993514) 1 NC_020163.1 hypothetical protein 1993514 14481918 APECO78_09705 Escherichia coli APEC O78 hypothetical protein YP_007381116.1 1993185 R 1274814 CDS YP_007381117.1 443617261 14481919 complement(1993524..1993808) 1 NC_020163.1 hypothetical protein 1993808 14481919 APECO78_09710 Escherichia coli APEC O78 hypothetical protein YP_007381117.1 1993524 R 1274814 CDS YP_007381118.1 443617262 14481920 1994576..1994788 1 NC_020163.1 adhesin 1994788 14481920 APECO78_09715 Escherichia coli APEC O78 adhesin YP_007381118.1 1994576 D 1274814 CDS YP_007381119.1 443617263 14481921 complement(1995160..1995426) 1 NC_020163.1 COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE 1995426 14481921 APECO78_09720 Escherichia coli APEC O78 cell division topological specificity factor MinE YP_007381119.1 1995160 R 1274814 CDS YP_007381120.1 443617264 14481922 complement(1995430..1996242) 1 NC_020163.1 COG2894 Septum formation inhibitor-activating ATPase; cell division inhibitor MinD 1996242 14481922 APECO78_09725 Escherichia coli APEC O78 cell division inhibitor MinD YP_007381120.1 1995430 R 1274814 CDS YP_007381121.1 443617265 14481923 complement(1996266..1996961) 1 NC_020163.1 COG0850 Septum formation inhibitor; septum formation inhibitor 1996961 minC 14481923 minC Escherichia coli APEC O78 septum formation inhibitor YP_007381121.1 1996266 R 1274814 CDS YP_007381122.1 443617266 14481924 1997340..1997705 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 1997705 14481924 APECO78_09735 Escherichia coli APEC O78 IS2 repressor TnpA YP_007381122.1 1997340 D 1274814 CDS YP_007381123.1 443617267 14481925 1997663..1998568 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 1998568 14481925 APECO78_09740 Escherichia coli APEC O78 IS2 transposase TnpB YP_007381123.1 1997663 D 1274814 CDS YP_007381124.1 443617268 14481926 1998817..1999185 1 NC_020163.1 hypothetical protein 1999185 14481926 APECO78_09745 Escherichia coli APEC O78 hypothetical protein YP_007381124.1 1998817 D 1274814 CDS YP_007381125.1 443617269 14481927 complement(1999305..1999706) 1 NC_020163.1 hypothetical protein 1999706 14481927 APECO78_09750 Escherichia coli APEC O78 hypothetical protein YP_007381125.1 1999305 R 1274814 CDS YP_007381126.1 443617270 14481928 1999915..2000241 1 NC_020163.1 COG3100 Uncharacterized protein conserved in bacteria; hypothetical protein 2000241 14481928 APECO78_09755 Escherichia coli APEC O78 hypothetical protein YP_007381126.1 1999915 D 1274814 CDS YP_007381127.1 443617271 14481929 2000313..2000972 1 NC_020163.1 COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); hypothetical protein 2000972 14481929 APECO78_09760 Escherichia coli APEC O78 hypothetical protein YP_007381127.1 2000313 D 1274814 CDS YP_007381128.1 443617272 14481930 2001064..2001510 1 NC_020163.1 COG2983 Uncharacterized conserved protein; hypothetical protein 2001510 14481930 APECO78_09765 Escherichia coli APEC O78 hypothetical protein YP_007381128.1 2001064 D 1274814 CDS YP_007381129.1 443617273 14481931 complement(2001717..2001998) 1 NC_020163.1 hemolysin E 2001998 hlyE 14481931 hlyE Escherichia coli APEC O78 hemolysin E YP_007381129.1 2001717 R 1274814 CDS YP_007381130.1 443617274 14481932 complement(2002118..2002627) 1 NC_020163.1 COG1511 Predicted membrane protein; hemolysin E 2002627 14481932 APECO78_09775 Escherichia coli APEC O78 hemolysin E YP_007381130.1 2002118 R 1274814 CDS YP_007381131.1 443617275 14481933 2003000..2003419 1 NC_020163.1 COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); DNA polymerase V subunit UmuD 2003419 14481933 APECO78_09780 Escherichia coli APEC O78 DNA polymerase V subunit UmuD YP_007381131.1 2003000 D 1274814 CDS YP_007381132.1 443617276 14481934 2003419..2004687 1 NC_020163.1 COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase V subunit UmuC 2004687 14481934 APECO78_09785 Escherichia coli APEC O78 DNA polymerase V subunit UmuC YP_007381132.1 2003419 D 1274814 CDS YP_007381133.1 443617277 14481935 complement(2004733..2005263) 1 NC_020163.1 COG1495 Disulfide bond formation protein DsbB; disulfide bond formation protein B 2005263 14481935 APECO78_09790 Escherichia coli APEC O78 disulfide bond formation protein B YP_007381133.1 2004733 R 1274814 CDS YP_007381134.1 443617278 14481936 complement(2005409..2006950) 1 NC_020163.1 COG3067 Na+/H+ antiporter; sodium/proton antiporter 2006950 14481936 APECO78_09795 Escherichia coli APEC O78 sodium/proton antiporter YP_007381134.1 2005409 R 1274814 CDS YP_007381135.1 443617279 14481937 2007171..2007890 1 NC_020163.1 COG2186 Transcriptional regulators; Fatty acid metabolism regulator protein 2007890 14481937 APECO78_09800 Escherichia coli APEC O78 Fatty acid metabolism regulator protein YP_007381135.1 2007171 D 1274814 CDS YP_007381136.1 443617280 14481938 complement(2007942..2009474) 1 NC_020163.1 COG2719 Uncharacterized conserved protein; SpoVR family protein 2009474 14481938 APECO78_09805 Escherichia coli APEC O78 SpoVR family protein YP_007381136.1 2007942 R 1274814 CDS YP_007381137.1 443617281 14481939 2009804..2011102 1 NC_020163.1 COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase small subunit 2011102 14481939 APECO78_09810 Escherichia coli APEC O78 D-amino acid dehydrogenase small subunit YP_007381137.1 2009804 D 1274814 CDS YP_007381138.1 443617282 14481940 2011112..2012182 1 NC_020163.1 COG0787 Alanine racemase; alanine racemase 2012182 dadX 14481940 dadX Escherichia coli APEC O78 alanine racemase YP_007381138.1 2011112 D 1274814 CDS YP_007381139.1 443617283 14481941 complement(2012568..2014304) 1 NC_020163.1 COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain; potassium/proton antiporter 2014304 14481941 APECO78_09820 Escherichia coli APEC O78 potassium/proton antiporter YP_007381139.1 2012568 R 1274814 CDS YP_007381140.1 443617284 14481942 complement(2014399..2015313) 1 NC_020163.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; L,D-carboxypeptidase A 2015313 ldcA 14481942 ldcA Escherichia coli APEC O78 L,D-carboxypeptidase A YP_007381140.1 2014399 R 1274814 CDS YP_007381141.1 443617285 14481943 2015413..2016024 1 NC_020163.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein endotransglycosylase E 2016024 emtA 14481943 emtA Escherichia coli APEC O78 lytic murein endotransglycosylase E YP_007381141.1 2015413 D 1274814 CDS YP_007381142.1 443617286 14481944 complement(2016026..2016760) 1 NC_020163.1 COG5581 Predicted glycosyltransferase; YcgR protein 2016760 14481944 APECO78_09835 Escherichia coli APEC O78 YcgR protein YP_007381142.1 2016026 R 1274814 CDS YP_007381143.1 443617287 14481945 2016961..2017215 1 NC_020163.1 COG2261 Predicted membrane protein; inner membrane protein 2017215 14481945 APECO78_09840 Escherichia coli APEC O78 inner membrane protein YP_007381143.1 2016961 D 1274814 CDS YP_007381144.1 443617288 14481946 2017393..2017833 1 NC_020163.1 hypothetical protein 2017833 14481946 APECO78_09845 Escherichia coli APEC O78 hypothetical protein YP_007381144.1 2017393 D 1274814 CDS YP_007381145.1 443617289 14481947 complement(2017912..2019609) 1 NC_020163.1 COG1626 Neutral trehalase; trehalase 2019609 treA 14481947 treA Escherichia coli APEC O78 trehalase YP_007381145.1 2017912 R 1274814 CDS YP_007381146.1 443617290 14481948 complement(2019929..2021347) 1 NC_020163.1 COG3412 Uncharacterized protein conserved in bacteria; dihydroxyacetone kinase subunit M 2021347 14481948 APECO78_09855 Escherichia coli APEC O78 dihydroxyacetone kinase subunit M YP_007381146.1 2019929 R 1274814 CDS YP_007381147.1 443617291 14481949 complement(2021358..2021990) 1 NC_020163.1 COG2376 Dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaL 2021990 14481949 APECO78_09860 Escherichia coli APEC O78 dihydroxyacetone kinase subunit DhaL YP_007381147.1 2021358 R 1274814 CDS YP_007381148.1 443617292 14481950 complement(2022001..2023071) 1 NC_020163.1 COG2376 Dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 2023071 14481950 APECO78_09865 Escherichia coli APEC O78 dihydroxyacetone kinase subunit DhaK YP_007381148.1 2022001 R 1274814 CDS YP_007381149.1 443617293 14481951 2023299..2025218 1 NC_020163.1 COG3284 Transcriptional activator of acetoin/glycerol metabolism; DNA-binding transcriptional regulator DhaR 2025218 14481951 APECO78_09870 Escherichia coli APEC O78 DNA-binding transcriptional regulator DhaR YP_007381149.1 2023299 D 1274814 CDS YP_007381150.1 443617294 14481952 2028548..2028751 1 NC_020163.1 hypothetical protein 2028751 14481952 APECO78_09885 Escherichia coli APEC O78 hypothetical protein YP_007381150.1 2028548 D 1274814 CDS YP_007381151.1 443617295 14481953 complement(2029044..2030135) 1 NC_020163.1 COG0012 Predicted GTPase, probable translation factor; GTP-binding protein YchF 2030135 14481953 APECO78_09890 Escherichia coli APEC O78 GTP-binding protein YchF YP_007381151.1 2029044 R 1274814 CDS YP_007381152.1 443617296 14481954 complement(2030252..2030836) 1 NC_020163.1 COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 2030836 14481954 APECO78_09895 Escherichia coli APEC O78 peptidyl-tRNA hydrolase YP_007381152.1 2030252 R 1274814 CDS YP_007381153.1 443617297 14481955 2031114..2031392 1 NC_020163.1 hypothetical protein 2031392 14481955 APECO78_09900 Escherichia coli APEC O78 hypothetical protein YP_007381153.1 2031114 D 1274814 CDS YP_007381154.1 443617298 14481956 complement(2031447..2033126) 1 NC_020163.1 COG0659 Sulfate permease and related transporters (MFS superfamily); transporter 2033126 14481956 APECO78_09905 Escherichia coli APEC O78 transporter YP_007381154.1 2031447 R 1274814 CDS YP_007381155.1 443617299 14481957 complement(2033251..2034198) 1 NC_020163.1 COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 2034198 14481957 APECO78_09910 Escherichia coli APEC O78 ribose-phosphate pyrophosphokinase YP_007381155.1 2033251 R 1274814 CDS YP_007381156.1 443617300 14481958 complement(2034349..2035200) 1 NC_020163.1 COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2035200 ipk 14481958 ipk Escherichia coli APEC O78 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_007381156.1 2034349 R 1274814 CDS YP_007381157.1 443617301 14481959 complement(2035200..2035823) 1 NC_020163.1 COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis; outer membrane lipoprotein LolB 2035823 14481959 APECO78_09920 Escherichia coli APEC O78 outer membrane lipoprotein LolB YP_007381157.1 2035200 R 1274814 CDS YP_007381158.1 443617302 14481960 2036037..2037293 1 NC_020163.1 COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase 2037293 hemA 14481960 hemA Escherichia coli APEC O78 glutamyl-tRNA reductase YP_007381158.1 2036037 D 1274814 CDS YP_007381159.1 443617303 14481961 2037335..2038417 1 NC_020163.1 COG0216 Protein chain release factor A; peptide chain release factor 1 2038417 14481961 APECO78_09930 Escherichia coli APEC O78 peptide chain release factor 1 YP_007381159.1 2037335 D 1274814 CDS YP_007381160.1 443617304 14481962 2038417..2039250 1 NC_020163.1 COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2039250 14481962 APECO78_09935 Escherichia coli APEC O78 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_007381160.1 2038417 D 1274814 CDS YP_007381161.1 443617305 14481963 2039247..2039639 1 NC_020163.1 COG3094 Uncharacterized protein conserved in bacteria; hypothetical protein 2039639 14481963 APECO78_09940 Escherichia coli APEC O78 hypothetical protein YP_007381161.1 2039247 D 1274814 CDS YP_007381162.1 443617306 14481964 2039643..2040452 1 NC_020163.1 COG2912 Uncharacterized conserved protein; hypothetical protein 2040452 14481964 APECO78_09945 Escherichia coli APEC O78 hypothetical protein YP_007381162.1 2039643 D 1274814 CDS YP_007381163.1 443617307 14481965 2040488..2041342 1 NC_020163.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase 2041342 14481965 APECO78_09950 Escherichia coli APEC O78 2-dehydro-3-deoxyphosphooctonate aldolase YP_007381163.1 2040488 D 1274814 CDS YP_007381164.1 443617308 14481966 complement(2041490..2041597) 1 NC_020163.1 hypothetical protein 2041597 14481966 APECO78_09955 Escherichia coli APEC O78 hypothetical protein YP_007381164.1 2041490 R 1274814 CDS YP_007381165.1 443617309 14481967 complement(2042026..2042133) 1 NC_020163.1 hypothetical protein 2042133 14481967 APECO78_09960 Escherichia coli APEC O78 hypothetical protein YP_007381165.1 2042026 R 1274814 CDS YP_007381166.1 443617310 14481968 complement(2042538..2043638) 1 NC_020163.1 COG0387 Ca2+/H+ antiporter; calcium/sodium:proton antiporter 2043638 14481968 APECO78_09965 Escherichia coli APEC O78 calcium/sodium:proton antiporter YP_007381166.1 2042538 R 1274814 CDS YP_007381167.1 443617311 14481969 2043908..2044138 1 NC_020163.1 COG4572 Putative cation transport regulator; cation transport regulator 2044138 chaB 14481969 chaB Escherichia coli APEC O78 cation transport regulator YP_007381167.1 2043908 D 1274814 CDS YP_007381168.1 443617312 14481970 2044275..2044991 1 NC_020163.1 COG3703 Uncharacterized protein involved in cation transport; regulatory protein for cation transport 2044991 14481970 APECO78_09975 Escherichia coli APEC O78 regulatory protein for cation transport YP_007381168.1 2044275 D 1274814 CDS YP_007381169.1 443617313 14481971 complement(2045035..2045388) 1 NC_020163.1 COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; hypothetical protein 2045388 14481971 APECO78_09980 Escherichia coli APEC O78 hypothetical protein YP_007381169.1 2045035 R 1274814 CDS YP_007381170.1 443617314 14481972 2045714..2046967 1 NC_020163.1 invasin 2046967 14481972 APECO78_09985 Escherichia coli APEC O78 invasin YP_007381170.1 2045714 D 1274814 CDS YP_007381171.1 443617315 14481973 complement(2046968..2047618) 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; fused DNA-binding response regulator NarL and sensory histidine kinase NarX in two-component regulatory system 2047618 14481973 APECO78_09990 Escherichia coli APEC O78 fused DNA-binding response regulator NarL and sensory histidine kinase NarX in two-component regulatory system YP_007381171.1 2046968 R 1274814 CDS YP_007381172.1 443617316 14481974 complement(2047611..2049407) 1 NC_020163.1 COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarX 2049407 14481974 APECO78_09995 Escherichia coli APEC O78 nitrate/nitrite sensor protein NarX YP_007381172.1 2047611 R 1274814 CDS YP_007381173.1 443617317 14481975 2049746..2051137 1 NC_020163.1 COG2223 Nitrate/nitrite transporter; nitrite extrusion protein 2051137 14481975 APECO78_10000 Escherichia coli APEC O78 nitrite extrusion protein YP_007381173.1 2049746 D 1274814 CDS YP_007381174.1 443617318 14481976 2051530..2055273 1 NC_020163.1 COG5013 Nitrate reductase alpha subunit; nitrate reductase subunit alpha 2055273 14481976 APECO78_10005 Escherichia coli APEC O78 nitrate reductase subunit alpha YP_007381174.1 2051530 D 1274814 CDS YP_007381175.1 443617319 14481977 2055270..2056808 1 NC_020163.1 COG1140 Nitrate reductase beta subunit; nitrate reductase A subunit beta 2056808 narH 14481977 narH Escherichia coli APEC O78 nitrate reductase A subunit beta YP_007381175.1 2055270 D 1274814 CDS YP_007381176.1 443617320 14481978 2056805..2057515 1 NC_020163.1 COG2180 Nitrate reductase delta subunit; nitrate reductase molybdenum cofactor assembly chaperone NarJ 2057515 14481978 APECO78_10015 Escherichia coli APEC O78 nitrate reductase molybdenum cofactor assembly chaperone NarJ YP_007381176.1 2056805 D 1274814 CDS YP_007381177.1 443617321 14481979 2057515..2058192 1 NC_020163.1 COG2181 Nitrate reductase gamma subunit; Respiratory nitrate reductase subunit gamma 2058192 14481979 APECO78_10020 Escherichia coli APEC O78 Respiratory nitrate reductase subunit gamma YP_007381177.1 2057515 D 1274814 CDS YP_007381178.1 443617322 14481980 complement(2058397..2058486) 1 NC_020163.1 protamine-like protein 2058486 14481980 APECO78_10025 Escherichia coli APEC O78 protamine-like protein YP_007381178.1 2058397 R 1274814 CDS YP_007381179.1 443617323 14484618 complement(2058917..2059759) 1 NC_020163.1 COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate deformylase 2059759 14484618 APECO78_10030 Escherichia coli APEC O78 formyltetrahydrofolate deformylase YP_007381179.1 2058917 R 1274814 CDS YP_007381180.1 443617324 14481982 complement(2059809..2060267) 1 NC_020163.1 COG3012 Uncharacterized protein conserved in bacteria; hypothetical protein 2060267 14481982 APECO78_10035 Escherichia coli APEC O78 hypothetical protein YP_007381180.1 2059809 R 1274814 CDS YP_007381181.1 443617325 14481983 2060380..2061285 1 NC_020163.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; hypothetical protein 2061285 14481983 APECO78_10040 Escherichia coli APEC O78 hypothetical protein YP_007381181.1 2060380 D 1274814 CDS YP_007381182.1 443617326 14481984 2061377..2062390 1 NC_020163.1 COG0784 FOG: CheY-like receiver; response regulator of RpoS 2062390 14481984 APECO78_10045 Escherichia coli APEC O78 response regulator of RpoS YP_007381182.1 2061377 D 1274814 CDS YP_007381183.1 443617327 14481985 2062592..2063500 1 NC_020163.1 COG1210 UDP-glucose pyrophosphorylase; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 2063500 14481985 APECO78_10050 Escherichia coli APEC O78 UTP--glucose-1-phosphate uridylyltransferase subunit GalU YP_007381183.1 2062592 D 1274814 CDS YP_007381184.1 443617328 14481986 complement(2063644..2064057) 1 NC_020163.1 COG2916 DNA-binding protein H-NS; global DNA-binding transcriptional dual regulator H-NS 2064057 14481986 APECO78_10055 Escherichia coli APEC O78 global DNA-binding transcriptional dual regulator H-NS YP_007381184.1 2063644 R 1274814 CDS YP_007381185.1 443617329 14481987 2064661..2065278 1 NC_020163.1 COG1435 Thymidine kinase; thymidine kinase 2065278 14481987 APECO78_10060 Escherichia coli APEC O78 thymidine kinase YP_007381185.1 2064661 D 1274814 CDS YP_007381186.1 443617330 14481988 complement(2065580..2068255) 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2068255 14481988 APECO78_10065 Escherichia coli APEC O78 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_007381186.1 2065580 R 1274814 CDS YP_007381187.1 443617331 14481989 2068732..2069379 1 NC_020163.1 COG2095 Multiple antibiotic transporter; hypothetical protein 2069379 14481989 APECO78_10070 Escherichia coli APEC O78 hypothetical protein YP_007381187.1 2068732 D 1274814 CDS YP_007381188.1 443617332 14481990 2070117..2071748 1 NC_020163.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; oligopeptide ABC transporter substrate-binding protein OppA 2071748 14481990 APECO78_10075 Escherichia coli APEC O78 oligopeptide ABC transporter substrate-binding protein OppA YP_007381188.1 2070117 D 1274814 CDS YP_007381189.1 443617333 14481991 2071834..2072754 1 NC_020163.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide transporter permease 2072754 14481991 APECO78_10080 Escherichia coli APEC O78 oligopeptide transporter permease YP_007381189.1 2071834 D 1274814 CDS YP_007381190.1 443617334 14481992 2072769..2073677 1 NC_020163.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide ABC transporter permease OppC 2073677 14481992 APECO78_10085 Escherichia coli APEC O78 oligopeptide ABC transporter permease OppC YP_007381190.1 2072769 D 1274814 CDS YP_007381191.1 443617335 14481993 2073689..2074702 1 NC_020163.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein 2074702 14481993 APECO78_10090 Escherichia coli APEC O78 oligopeptide ABC transporter ATP-binding protein YP_007381191.1 2073689 D 1274814 CDS YP_007381192.1 443617336 14481994 2074699..2075703 1 NC_020163.1 COG4608 ABC-type oligopeptide transport system, ATPase component; oligopeptide ABC transporter ATP-binding protein OppF 2075703 14481994 APECO78_10095 Escherichia coli APEC O78 oligopeptide ABC transporter ATP-binding protein OppF YP_007381192.1 2074699 D 1274814 CDS YP_007381193.1 443617337 14481995 complement(2075756..2076085) 1 NC_020163.1 COG3099 Uncharacterized protein conserved in bacteria; dsDNA-mimic protein 2076085 14481995 APECO78_10100 Escherichia coli APEC O78 dsDNA-mimic protein YP_007381193.1 2075756 R 1274814 CDS YP_007381194.1 443617338 14481996 complement(2076120..2077580) 1 NC_020163.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthetase 2077580 14481996 APECO78_10105 Escherichia coli APEC O78 cardiolipin synthetase YP_007381194.1 2076120 R 1274814 CDS YP_007381195.1 443617339 14481997 2077612..2077896 1 NC_020163.1 hypothetical protein 2077896 14481997 APECO78_10110 Escherichia coli APEC O78 hypothetical protein YP_007381195.1 2077612 D 1274814 CDS YP_007381196.1 443617340 14481998 complement(2077951..2079204) 1 NC_020163.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component; voltage-gated potassium channel 2079204 14481998 APECO78_10115 Escherichia coli APEC O78 voltage-gated potassium channel YP_007381196.1 2077951 R 1274814 CDS YP_007381197.1 443617341 14481999 complement(2079504..2079800) 1 NC_020163.1 COG2350 Uncharacterized protein conserved in bacteria; hypothetical protein 2079800 14481999 APECO78_10120 Escherichia coli APEC O78 hypothetical protein YP_007381197.1 2079504 R 1274814 CDS YP_007381198.1 443617342 14482000 2080024..2080743 1 NC_020163.1 COG0810 Periplasmic protein TonB, links inner and outer membranes; transport protein TonB 2080743 14482000 APECO78_10125 Escherichia coli APEC O78 transport protein TonB YP_007381198.1 2080024 D 1274814 CDS YP_007381199.1 443617343 14482001 complement(2080783..2081181) 1 NC_020163.1 COG1607 Acyl-CoA hydrolase; acyl-CoA esterase 2081181 14482001 APECO78_10130 Escherichia coli APEC O78 acyl-CoA esterase YP_007381199.1 2080783 R 1274814 CDS YP_007381200.1 443617344 14482002 complement(2081286..2081825) 1 NC_020163.1 COG2917 Intracellular septation protein A; intracellular septation protein A 2081825 14482002 APECO78_10135 Escherichia coli APEC O78 intracellular septation protein A YP_007381200.1 2081286 R 1274814 CDS YP_007381201.1 443617345 14482003 complement(2081855..2082598) 1 NC_020163.1 hypothetical protein 2082598 14482003 APECO78_10140 Escherichia coli APEC O78 hypothetical protein YP_007381201.1 2081855 R 1274814 CDS YP_007381202.1 443617346 14482004 2082955..2083593 1 NC_020163.1 COG3047 Outer membrane protein W; outer membrane protein W 2083593 14482004 APECO78_10145 Escherichia coli APEC O78 outer membrane protein W YP_007381202.1 2082955 D 1274814 CDS YP_007381203.1 443617347 14482005 complement(2083653..2084159) 1 NC_020163.1 COG3685 Uncharacterized protein conserved in bacteria; hypothetical protein 2084159 14482005 APECO78_10150 Escherichia coli APEC O78 hypothetical protein YP_007381203.1 2083653 R 1274814 CDS YP_007381204.1 443617348 14482006 complement(2084205..2084705) 1 NC_020163.1 COG3685 Uncharacterized protein conserved in bacteria; YciF protein 2084705 14482006 APECO78_10155 Escherichia coli APEC O78 YciF protein YP_007381204.1 2084205 R 1274814 CDS YP_007381205.1 443617349 14482007 complement(2084791..2084970) 1 NC_020163.1 COG3729 General stress protein; hypothetical protein 2084970 14482007 APECO78_10160 Escherichia coli APEC O78 hypothetical protein YP_007381205.1 2084791 R 1274814 CDS YP_007381206.1 443617350 14482008 complement(2085351..2086157) 1 NC_020163.1 COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha 2086157 trpA 14482008 trpA Escherichia coli APEC O78 tryptophan synthase subunit alpha YP_007381206.1 2085351 R 1274814 CDS YP_007381207.1 443617351 14482009 complement(2086157..2087350) 1 NC_020163.1 COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta 2087350 14482009 APECO78_10170 Escherichia coli APEC O78 tryptophan synthase subunit beta YP_007381207.1 2086157 R 1274814 CDS YP_007381208.1 443617352 14482010 complement(2087362..2088720) 1 NC_020163.1 COG0134 Indole-3-glycerol phosphate synthase; fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl) anthranilate isomerase 2088720 14482010 APECO78_10175 Escherichia coli APEC O78 fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl) anthranilate isomerase YP_007381208.1 2087362 R 1274814 CDS YP_007381209.1 443617353 14482011 complement(2088724..2090319) 1 NC_020163.1 COG0512 Anthranilate/para-aminobenzoate synthases component II; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 2090319 14482011 APECO78_10180 Escherichia coli APEC O78 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_007381209.1 2088724 R 1274814 CDS YP_007381210.1 443617354 14482012 complement(2090319..2091881) 1 NC_020163.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I 2091881 14482012 APECO78_10185 Escherichia coli APEC O78 anthranilate synthase component I YP_007381210.1 2090319 R 1274814 CDS YP_007381211.1 443617355 14482013 2092154..2093035 1 NC_020163.1 COG0613 Predicted metal-dependent phosphoesterases (PHP family); hypothetical protein 2093035 14482013 APECO78_10190 Escherichia coli APEC O78 hypothetical protein YP_007381211.1 2092154 D 1274814 CDS YP_007381212.1 443617356 14482014 2093032..2093652 1 NC_020163.1 COG0009 Putative translation factor (SUA5); hypothetical protein 2093652 14482014 APECO78_10195 Escherichia coli APEC O78 hypothetical protein YP_007381212.1 2093032 D 1274814 CDS YP_007381213.1 443617357 14482015 2093753..2094625 1 NC_020163.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 23S rRNA pseudouridylate synthase B 2094625 14482015 APECO78_10200 Escherichia coli APEC O78 23S rRNA pseudouridylate synthase B YP_007381213.1 2093753 D 1274814 CDS YP_007381214.1 443617358 14482016 complement(2094665..2095255) 1 NC_020163.1 COG2109 ATP:corrinoid adenosyltransferase; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase 2095255 14482016 APECO78_10205 Escherichia coli APEC O78 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase YP_007381214.1 2094665 R 1274814 CDS YP_007381215.1 443617359 14482017 complement(2095252..2096010) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxoacyl-(acyl carrier protein) reductase 2096010 14482017 APECO78_10210 Escherichia coli APEC O78 oxoacyl-(acyl carrier protein) reductase YP_007381215.1 2095252 R 1274814 CDS YP_007381216.1 443617360 14482018 2096230..2097279 1 NC_020163.1 COG0616 Periplasmic serine proteases (ClpP class); inner membrane peptidase 2097279 14482018 APECO78_10215 Escherichia coli APEC O78 inner membrane peptidase YP_007381216.1 2096230 D 1274814 CDS YP_007381217.1 443617361 14482019 complement(2097315..2097566) 1 NC_020163.1 hypothetical protein 2097566 14482019 APECO78_10220 Escherichia coli APEC O78 hypothetical protein YP_007381217.1 2097315 R 1274814 CDS YP_007381218.1 443617362 14482020 2097946..2100543 1 NC_020163.1 COG0550 Topoisomerase IA; DNA topoisomerase I subunit omega 2100543 14482020 APECO78_10225 Escherichia coli APEC O78 DNA topoisomerase I subunit omega YP_007381218.1 2097946 D 1274814 CDS YP_007381219.1 443617363 14482021 2100753..2101727 1 NC_020163.1 COG0583 Transcriptional regulator; transcriptional regulator CysB 2101727 14482021 APECO78_10230 Escherichia coli APEC O78 transcriptional regulator CysB YP_007381219.1 2100753 D 1274814 CDS YP_007381220.1 443617364 14482022 2102058..2102186 1 NC_020163.1 hypothetical protein 2102186 14482022 APECO78_10235 Escherichia coli APEC O78 hypothetical protein YP_007381220.1 2102058 D 1274814 CDS YP_007381221.1 443617365 14482023 2102189..2102356 1 NC_020163.1 hypothetical protein 2102356 14482023 APECO78_10240 Escherichia coli APEC O78 hypothetical protein YP_007381221.1 2102189 D 1274814 CDS YP_007381222.1 443617366 14482024 complement(2102430..2102555) 1 NC_020163.1 hypothetical protein 2102555 14482024 APECO78_10245 Escherichia coli APEC O78 hypothetical protein YP_007381222.1 2102430 R 1274814 CDS YP_007381223.1 443617367 14482025 2102729..2105404 1 NC_020163.1 COG1048 Aconitase A; aconitate hydratase 2105404 14482025 APECO78_10250 Escherichia coli APEC O78 aconitate hydratase YP_007381223.1 2102729 D 1274814 CDS YP_007381224.1 443617368 14482026 complement(2105468..2106058) 1 NC_020163.1 COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II 2106058 14482026 APECO78_10255 Escherichia coli APEC O78 GTP cyclohydrolase II YP_007381224.1 2105468 R 1274814 CDS YP_007381225.1 443617369 14482027 2106228..2106992 1 NC_020163.1 COG0671 Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B 2106992 14482027 APECO78_10260 Escherichia coli APEC O78 phosphatidylglycerophosphatase B YP_007381225.1 2106228 D 1274814 CDS YP_007381226.1 443617370 14482028 2107141..2107449 1 NC_020163.1 COG3771 Predicted membrane protein; hypothetical protein 2107449 14482028 APECO78_10265 Escherichia coli APEC O78 hypothetical protein YP_007381226.1 2107141 D 1274814 CDS YP_007381227.1 443617371 14482029 2107456..2108625 1 NC_020163.1 COG2956 Predicted N-acetylglucosaminyl transferase; hypothetical protein 2108625 14482029 APECO78_10270 Escherichia coli APEC O78 hypothetical protein YP_007381227.1 2107456 D 1274814 CDS YP_007381228.1 443617372 14482030 2108818..2109555 1 NC_020163.1 COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2109555 14482030 APECO78_10275 Escherichia coli APEC O78 orotidine 5'-phosphate decarboxylase YP_007381228.1 2108818 D 1274814 CDS YP_007381229.1 443617373 14482031 2109555..2109881 1 NC_020163.1 COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins; translation initiation factor Sui1 2109881 14482031 APECO78_10280 Escherichia coli APEC O78 translation initiation factor Sui1 YP_007381229.1 2109555 D 1274814 CDS YP_007381230.1 443617374 14482032 complement(2110007..2110225) 1 NC_020163.1 lipoprotein 2110225 14482032 APECO78_10285 Escherichia coli APEC O78 lipoprotein YP_007381230.1 2110007 R 1274814 CDS YP_007381231.1 443617375 14482033 complement(2110494..2111243) 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptionel regulator 2111243 14482033 APECO78_10290 Escherichia coli APEC O78 DeoR family transcriptionel regulator YP_007381231.1 2110494 R 1274814 CDS YP_007381232.1 443617376 14482034 complement(2111333..2111506) 1 NC_020163.1 hypothetical protein 2111506 14482034 APECO78_10295 Escherichia coli APEC O78 hypothetical protein YP_007381232.1 2111333 R 1274814 CDS YP_007381233.1 443617377 14482035 complement(2111653..2113638) 1 NC_020163.1 COG2199 FOG: GGDEF domain; RNase II stability modulator 2113638 14482035 APECO78_10300 Escherichia coli APEC O78 RNase II stability modulator YP_007381233.1 2111653 R 1274814 CDS YP_007381234.1 443617378 14482036 complement(2113873..2115807) 1 NC_020163.1 COG4776 Exoribonuclease II; exoribonuclease II 2115807 14482036 APECO78_10305 Escherichia coli APEC O78 exoribonuclease II YP_007381234.1 2113873 R 1274814 CDS YP_007381235.1 443617379 14482037 complement(2115875..2117002) 1 NC_020163.1 COG2128 Uncharacterized conserved protein; oxidoreductase 2117002 14482037 APECO78_10310 Escherichia coli APEC O78 oxidoreductase YP_007381235.1 2115875 R 1274814 CDS YP_007381236.1 443617380 14482038 complement(2117147..2117935) 1 NC_020163.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-ACP reductase 2117935 14482038 APECO78_10315 Escherichia coli APEC O78 enoyl-ACP reductase YP_007381236.1 2117147 R 1274814 CDS YP_007381237.1 443617381 14482039 complement(2118303..2118656) 1 NC_020163.1 COG2852 Uncharacterized protein conserved in bacteria; hypothetical protein 2118656 14482039 APECO78_10320 Escherichia coli APEC O78 hypothetical protein YP_007381237.1 2118303 R 1274814 CDS YP_007381238.1 443617382 14482040 complement(2118724..2119530) 1 NC_020163.1 COG4167 ABC-type antimicrobial peptide transport system, ATPase component; antimicrobial peptide ABC system ATP-binding protein SapF 2119530 14482040 APECO78_10325 Escherichia coli APEC O78 antimicrobial peptide ABC system ATP-binding protein SapF YP_007381238.1 2118724 R 1274814 CDS YP_007381239.1 443617383 14482041 complement(2119532..2120524) 1 NC_020163.1 COG4170 ABC-type antimicrobial peptide transport system, ATPase component; antimicrobial peptide ABC transporter ATP-binding protein 2120524 14482041 APECO78_10330 Escherichia coli APEC O78 antimicrobial peptide ABC transporter ATP-binding protein YP_007381239.1 2119532 R 1274814 CDS YP_007381240.1 443617384 14482042 complement(2120524..2121414) 1 NC_020163.1 COG4171 ABC-type antimicrobial peptide transport system, permease component; antimicrobial peptide ABC transporter permease SapC 2121414 14482042 APECO78_10335 Escherichia coli APEC O78 antimicrobial peptide ABC transporter permease SapC YP_007381240.1 2120524 R 1274814 CDS YP_007381241.1 443617385 14482043 complement(2121401..2122366) 1 NC_020163.1 COG4168 ABC-type antimicrobial peptide transport system, permease component; antimicrobial peptide ABC transporter permease SapB 2122366 14482043 APECO78_10340 Escherichia coli APEC O78 antimicrobial peptide ABC transporter permease SapB YP_007381241.1 2121401 R 1274814 CDS YP_007381242.1 443617386 14482044 complement(2122363..2124006) 1 NC_020163.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; antimicrobial peptide ABC transporter substrate-binding protein SapA 2124006 14482044 APECO78_10345 Escherichia coli APEC O78 antimicrobial peptide ABC transporter substrate-binding protein SapA YP_007381242.1 2122363 R 1274814 CDS YP_007381243.1 443617387 14482045 complement(2124319..2124564) 1 NC_020163.1 COG0480 Translation elongation factors (GTPases); hypothetical protein 2124564 14482045 APECO78_10350 Escherichia coli APEC O78 hypothetical protein YP_007381243.1 2124319 R 1274814 CDS YP_007381244.1 443617388 14482046 complement(2124698..2126083) 1 NC_020163.1 COG0531 Amino acid transporters; putrescine importer PuuP 2126083 14482046 APECO78_10355 Escherichia coli APEC O78 putrescine importer PuuP YP_007381244.1 2124698 R 1274814 CDS YP_007381245.1 443617389 14482047 complement(2126386..2127804) 1 NC_020163.1 COG0174 Glutamine synthetase; glutamate--putrescine ligase 2127804 14482047 APECO78_10360 Escherichia coli APEC O78 glutamate--putrescine ligase YP_007381245.1 2126386 R 1274814 CDS YP_007381246.1 443617390 14482048 2128016..2128780 1 NC_020163.1 COG2071 Predicted glutamine amidotransferases; gamma-glutamyl-gamma-aminobutyrate hydrolase 2128780 puuD 14482048 puuD Escherichia coli APEC O78 gamma-glutamyl-gamma-aminobutyrate hydrolase YP_007381246.1 2128016 D 1274814 CDS YP_007381247.1 443617391 14482049 2128807..2129364 1 NC_020163.1 COG1396 Predicted transcriptional regulators; DNA-binding transcriptional repressor PuuR 2129364 14482049 APECO78_10370 Escherichia coli APEC O78 DNA-binding transcriptional repressor PuuR YP_007381247.1 2128807 D 1274814 CDS YP_007381248.1 443617392 14482050 2129514..2131001 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; gamma-glutamyl-gamma- aminobutyraldehydedehydrogenase 2131001 14482050 APECO78_10375 Escherichia coli APEC O78 gamma-glutamyl-gamma- aminobutyraldehydedehydrogenase YP_007381248.1 2129514 D 1274814 CDS YP_007381249.1 443617393 14482051 2131003..2132283 1 NC_020163.1 COG0665 Glycine/D-amino acid oxidases (deaminating); gamma-glutamylputrescine oxidoreductase 2132283 14482051 APECO78_10380 Escherichia coli APEC O78 gamma-glutamylputrescine oxidoreductase YP_007381249.1 2131003 D 1274814 CDS YP_007381250.1 443617394 14482052 2132321..2133586 1 NC_020163.1 COG0160 4-aminobutyrate aminotransferase and related aminotransferases; 4-aminobutyrate transaminase 2133586 14482052 APECO78_10385 Escherichia coli APEC O78 4-aminobutyrate transaminase YP_007381250.1 2132321 D 1274814 CDS YP_007381251.1 443617395 14482053 complement(2133717..2134694) 1 NC_020163.1 COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain; phage shock protein operon transcriptional activator 2134694 pspF 14482053 pspF Escherichia coli APEC O78 phage shock protein operon transcriptional activator YP_007381251.1 2133717 R 1274814 CDS YP_007381252.1 443617396 14482054 2134861..2135529 1 NC_020163.1 COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; phage shock protein PspA 2135529 14482054 APECO78_10395 Escherichia coli APEC O78 phage shock protein PspA YP_007381252.1 2134861 D 1274814 CDS YP_007381253.1 443617397 14482055 2135583..2135807 1 NC_020163.1 phage shock protein B 2135807 14482055 APECO78_10400 Escherichia coli APEC O78 phage shock protein B YP_007381253.1 2135583 D 1274814 CDS YP_007381254.1 443617398 14482056 2135807..2136166 1 NC_020163.1 COG1983 Putative stress-responsive transcriptional regulator; DNA-binding transcriptional activator PspC 2136166 14482056 APECO78_10405 Escherichia coli APEC O78 DNA-binding transcriptional activator PspC YP_007381254.1 2135807 D 1274814 CDS YP_007381255.1 443617399 14482057 2136175..2136396 1 NC_020163.1 peripheral inner membrane phage-shock protein 2136396 14482057 APECO78_10410 Escherichia coli APEC O78 peripheral inner membrane phage-shock protein YP_007381255.1 2136175 D 1274814 CDS YP_007381256.1 443617400 14482058 2136471..2136785 1 NC_020163.1 COG0607 Rhodanese-related sulfurtransferase; thiosulfate:cyanide sulfurtransferase 2136785 14482058 APECO78_10415 Escherichia coli APEC O78 thiosulfate:cyanide sulfurtransferase YP_007381256.1 2136471 D 1274814 CDS YP_007381257.1 443617401 14482059 2136998..2138677 1 NC_020163.1 COG0366 Glycosidases; putative glucosyltransferase 2138677 14482059 APECO78_10420 Escherichia coli APEC O78 putative glucosyltransferase YP_007381257.1 2136998 D 1274814 CDS YP_007381258.1 443617402 14482060 2138691..2139983 1 NC_020163.1 COG1653 ABC-type sugar transport system, periplasmic component; sugar transporter subunit 2139983 14482060 APECO78_10425 Escherichia coli APEC O78 sugar transporter subunit YP_007381258.1 2138691 D 1274814 CDS YP_007381259.1 443617403 14482061 2140004..2140885 1 NC_020163.1 COG1175 ABC-type sugar transport systems, permease components; sugar transporter subunit 2140885 14482061 APECO78_10430 Escherichia coli APEC O78 sugar transporter subunit YP_007381259.1 2140004 D 1274814 CDS YP_007381260.1 443617404 14482062 2140872..2141714 1 NC_020163.1 COG0395 ABC-type sugar transport system, permease component; sugar transporter subunit 2141714 14482062 APECO78_10435 Escherichia coli APEC O78 sugar transporter subunit YP_007381260.1 2140872 D 1274814 CDS YP_007381261.1 443617405 14482063 2141745..2142797 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase, Zn-dependent and NAD(P)-binding protein 2142797 14482063 APECO78_10440 Escherichia coli APEC O78 oxidoreductase, Zn-dependent and NAD(P)-binding protein YP_007381261.1 2141745 D 1274814 CDS YP_007381262.1 443617406 14482064 2142815..2143603 1 NC_020163.1 COG1082 Sugar phosphate isomerases/epimerases; hypothetical protein 2143603 14482064 APECO78_10445 Escherichia coli APEC O78 hypothetical protein YP_007381262.1 2142815 D 1274814 CDS YP_007381263.1 443617407 14482065 2143613..2144668 1 NC_020163.1 COG0673 Predicted dehydrogenases and related proteins; oxidoreductase, NADH-binding protein 2144668 14482065 APECO78_10450 Escherichia coli APEC O78 oxidoreductase, NADH-binding protein YP_007381263.1 2143613 D 1274814 CDS YP_007381264.1 443617408 14482066 2144665..2146932 1 NC_020163.1 COG1554 Trehalose and maltose hydrolases (possible phosphorylases); hydrolase 2146932 14482066 APECO78_10455 Escherichia coli APEC O78 hydrolase YP_007381264.1 2144665 D 1274814 CDS YP_007381265.1 443617409 14482067 2146929..2147588 1 NC_020163.1 COG0637 Predicted phosphatase/phosphohexomutase; beta-phosphoglucomutase 2147588 14482067 APECO78_10460 Escherichia coli APEC O78 beta-phosphoglucomutase YP_007381265.1 2146929 D 1274814 CDS YP_007381266.1 443617410 14482068 2147602..2148684 1 NC_020163.1 COG3839 ABC-type sugar transport systems, ATPase components; sugar transporter subunit 2148684 14482068 APECO78_10465 Escherichia coli APEC O78 sugar transporter subunit YP_007381266.1 2147602 D 1274814 CDS YP_007381267.1 443617411 14482069 2148729..2149634 1 NC_020163.1 outer membrane porin 2149634 14482069 APECO78_10470 Escherichia coli APEC O78 outer membrane porin YP_007381267.1 2148729 D 1274814 CDS YP_007381268.1 443617412 14482070 complement(2149745..2150743) 1 NC_020163.1 COG1609 Transcriptional regulators; putative DNA-binding transcriptional regulator, LACI-type 2150743 14482070 APECO78_10475 Escherichia coli APEC O78 putative DNA-binding transcriptional regulator, LACI-type YP_007381268.1 2149745 R 1274814 CDS YP_007381269.1 443617413 14482071 2150898..2152295 1 NC_020163.1 COG3106 Predicted ATPase; hypothetical protein 2152295 14482071 APECO78_10480 Escherichia coli APEC O78 hypothetical protein YP_007381269.1 2150898 D 1274814 CDS YP_007381270.1 443617414 14482072 2152292..2153353 1 NC_020163.1 COG3768 Predicted membrane protein; hypothetical protein 2153353 14482072 APECO78_10485 Escherichia coli APEC O78 hypothetical protein YP_007381270.1 2152292 D 1274814 CDS YP_007381271.1 443617415 14482073 2153501..2155042 1 NC_020163.1 COG3283 Transcriptional regulator of aromatic amino acids metabolism; DNA-binding transcriptional regulator TyrR 2155042 14482073 APECO78_10490 Escherichia coli APEC O78 DNA-binding transcriptional regulator TyrR YP_007381271.1 2153501 D 1274814 CDS YP_007381272.1 443617416 14482074 complement(2155086..2155592) 1 NC_020163.1 COG2077 Peroxiredoxin; lipid hydroperoxide peroxidase 2155592 14482074 APECO78_10495 Escherichia coli APEC O78 lipid hydroperoxide peroxidase YP_007381272.1 2155086 R 1274814 CDS YP_007381273.1 443617417 14482075 2155711..2156676 1 NC_020163.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; L-Ala-D/L-Glu epimerase 2156676 14482075 APECO78_10500 Escherichia coli APEC O78 L-Ala-D/L-Glu epimerase YP_007381273.1 2155711 D 1274814 CDS YP_007381274.1 443617418 14482076 complement(2156651..2157379) 1 NC_020163.1 COG2866 Predicted carboxypeptidase; murein peptide amidase A 2157379 14482076 APECO78_10505 Escherichia coli APEC O78 murein peptide amidase A YP_007381274.1 2156651 R 1274814 CDS YP_007381275.1 443617419 14482077 complement(2157480..2157644) 1 NC_020163.1 COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein 2157644 14482077 APECO78_10510 Escherichia coli APEC O78 hypothetical protein YP_007381275.1 2157480 R 1274814 CDS YP_007381276.1 443617420 14482078 complement(2157715..2158647) 1 NC_020163.1 COG1073 Hydrolases of the alpha/beta superfamily; hydrolase 2158647 14482078 APECO78_10515 Escherichia coli APEC O78 hydrolase YP_007381276.1 2157715 R 1274814 CDS YP_007381277.1 443617421 14482079 2158773..2159672 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2159672 14482079 APECO78_10520 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007381277.1 2158773 D 1274814 CDS YP_007381278.1 443617422 14482080 2159761..2159886 1 NC_020163.1 hypothetical protein 2159886 14482080 APECO78_10525 Escherichia coli APEC O78 hypothetical protein YP_007381278.1 2159761 D 1274814 CDS YP_007381279.1 443617423 14482081 2160009..2161622 1 NC_020163.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; Putative transport periplasmic protein 2161622 14482081 APECO78_10530 Escherichia coli APEC O78 Putative transport periplasmic protein YP_007381279.1 2160009 D 1274814 CDS YP_007381280.1 443617424 14482082 complement(2161673..2162704) 1 NC_020163.1 COG0668 Small-conductance mechanosensitive channel; hypothetical protein 2162704 14482082 APECO78_10535 Escherichia coli APEC O78 hypothetical protein YP_007381280.1 2161673 R 1274814 CDS YP_007381281.1 443617425 14482083 2162948..2163205 1 NC_020163.1 hypothetical protein 2163205 14482083 APECO78_10540 Escherichia coli APEC O78 hypothetical protein YP_007381281.1 2162948 D 1274814 CDS YP_007381282.1 443617426 14482084 complement(2163255..2164205) 1 NC_020163.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein UspE 2164205 14482084 APECO78_10545 Escherichia coli APEC O78 universal stress protein UspE YP_007381282.1 2163255 R 1274814 CDS YP_007381283.1 443617427 14482085 complement(2164357..2165109) 1 NC_020163.1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; fumarate/nitrate reduction transcriptional regulator 2165109 14482085 APECO78_10550 Escherichia coli APEC O78 fumarate/nitrate reduction transcriptional regulator YP_007381283.1 2164357 R 1274814 CDS YP_007381284.1 443617428 14482086 complement(2165304..2165819) 1 NC_020163.1 COG0350 Methylated DNA-protein cysteine methyltransferase; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 2165819 14482086 APECO78_10555 Escherichia coli APEC O78 O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_007381284.1 2165304 R 1274814 CDS YP_007381285.1 443617429 14482087 complement(2165830..2167356) 1 NC_020163.1 COG2978 Putative p-aminobenzoyl-glutamate transporter; aminobenzoyl-glutamate transporter 2167356 abgT 14482087 abgT Escherichia coli APEC O78 aminobenzoyl-glutamate transporter YP_007381285.1 2165830 R 1274814 CDS YP_007381286.1 443617430 14482088 complement(2167393..2168838) 1 NC_020163.1 COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; peptidase, aminobenzoyl-glutamate utilization protein AbgB 2168838 14482088 APECO78_10565 Escherichia coli APEC O78 peptidase, aminobenzoyl-glutamate utilization protein AbgB YP_007381286.1 2167393 R 1274814 CDS YP_007381287.1 443617431 14482089 complement(2168838..2170148) 1 NC_020163.1 COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; putative peptidase, aminobenzoyl-glutamate utilization protein AbgA 2170148 14482089 APECO78_10570 Escherichia coli APEC O78 putative peptidase, aminobenzoyl-glutamate utilization protein AbgA YP_007381287.1 2168838 R 1274814 CDS YP_007381288.1 443617432 14482090 2170324..2171232 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 2171232 14482090 APECO78_10575 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007381288.1 2170324 D 1274814 CDS YP_007381289.1 443617433 14482091 2171562..2172125 1 NC_020163.1 COG2840 Uncharacterized protein conserved in bacteria; Smr domain-containing protein 2172125 14482091 APECO78_10580 Escherichia coli APEC O78 Smr domain-containing protein YP_007381289.1 2171562 D 1274814 CDS YP_007381290.1 443617434 14482092 complement(2172146..2173378) 1 NC_020163.1 COG2199 FOG: GGDEF domain; hypothetical protein 2173378 14482092 APECO78_10585 Escherichia coli APEC O78 hypothetical protein YP_007381290.1 2172146 R 1274814 CDS YP_007381291.1 443617435 14482093 2173633..2174616 1 NC_020163.1 COG0598 Mg2+ and Co2+ transporters; Zn(II) transporter 2174616 14482093 APECO78_10590 Escherichia coli APEC O78 Zn(II) transporter YP_007381291.1 2173633 D 1274814 CDS YP_007381292.1 443617436 14482094 2174891..2175064 1 NC_020163.1 hypothetical protein 2175064 14482094 APECO78_10595 Escherichia coli APEC O78 hypothetical protein YP_007381292.1 2174891 D 1274814 CDS YP_007381293.1 443617437 14482095 2175094..2176467 1 NC_020163.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DbpA 2176467 14482095 APECO78_10600 Escherichia coli APEC O78 ATP-dependent RNA helicase DbpA YP_007381293.1 2175094 D 1274814 CDS YP_007381294.1 443617438 14482096 complement(2176596..2177531) 1 NC_020163.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA 2-thiocytidine biosynthesis protein TtcA 2177531 14482096 APECO78_10605 Escherichia coli APEC O78 tRNA 2-thiocytidine biosynthesis protein TtcA YP_007381294.1 2176596 R 1274814 CDS YP_007381295.1 443617439 14482097 complement(2177707..2178141) 1 NC_020163.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein F 2178141 14482097 APECO78_10610 Escherichia coli APEC O78 universal stress protein F YP_007381295.1 2177707 R 1274814 CDS YP_007381296.1 443617440 14482098 complement(2178282..2179415) 1 NC_020163.1 COG3203 Outer membrane protein (porin); outer membrane pore protein N, non-specific 2179415 14482098 APECO78_10615 Escherichia coli APEC O78 outer membrane pore protein N, non-specific YP_007381296.1 2178282 R 1274814 CDS YP_007381297.1 443617441 14482099 complement(2179782..2183306) 1 NC_020163.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; hypothetical protein 2183306 14482099 APECO78_10620 Escherichia coli APEC O78 hypothetical protein YP_007381297.1 2179782 R 1274814 CDS YP_007381298.1 443617442 14482100 2183580..2183846 1 NC_020163.1 COG3042 Putative hemolysin; hypothetical protein 2183846 14482100 APECO78_10625 Escherichia coli APEC O78 hypothetical protein YP_007381298.1 2183580 D 1274814 CDS YP_007381299.1 443617443 14482101 complement(2183843..2184265) 1 NC_020163.1 COG3187 Heat shock protein; heat-inducible protein 2184265 14482101 APECO78_10630 Escherichia coli APEC O78 heat-inducible protein YP_007381299.1 2183843 R 1274814 CDS YP_007381300.1 443617444 14482102 complement(2184376..2185365) 1 NC_020163.1 COG1052 Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase 2185365 14482102 APECO78_10635 Escherichia coli APEC O78 D-lactate dehydrogenase YP_007381300.1 2184376 R 1274814 CDS YP_007381301.1 443617445 14482103 2185573..2188212 1 NC_020163.1 hypothetical protein 2188212 14482103 APECO78_10640 Escherichia coli APEC O78 hypothetical protein YP_007381301.1 2185573 D 1274814 CDS YP_007381302.1 443617446 14482104 2188209..2188394 1 NC_020163.1 putative lipoprotein 2188394 14482104 APECO78_10645 Escherichia coli APEC O78 putative lipoprotein YP_007381302.1 2188209 D 1274814 CDS YP_007381303.1 443617447 14482105 2188402..2188728 1 NC_020163.1 COG3784 Uncharacterized protein conserved in bacteria; hypothetical protein 2188728 14482105 APECO78_10650 Escherichia coli APEC O78 hypothetical protein YP_007381303.1 2188402 D 1274814 CDS YP_007381304.1 443617448 14482106 complement(2188900..2189805) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; putative DNA-binding transcriptional dual regulator 2189805 14482106 APECO78_10655 Escherichia coli APEC O78 putative DNA-binding transcriptional dual regulator YP_007381304.1 2188900 R 1274814 CDS YP_007381305.1 443617449 14482107 2190041..2191540 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; phenylacetaldehyde dehydrogenase 2191540 14482107 APECO78_10660 Escherichia coli APEC O78 phenylacetaldehyde dehydrogenase YP_007381305.1 2190041 D 1274814 CDS YP_007381306.1 443617450 14482108 complement(2191598..2193871) 1 NC_020163.1 COG3733 Cu2+-containing amine oxidase; tyramine oxidase 2193871 tynA 14482108 tynA Escherichia coli APEC O78 tyramine oxidase YP_007381306.1 2191598 R 1274814 CDS YP_007381307.1 443617451 14482109 complement(2194119..2196164) 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2196164 14482109 APECO78_10670 Escherichia coli APEC O78 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase YP_007381307.1 2194119 R 1274814 CDS YP_007381308.1 443617452 14482110 2196449..2197378 1 NC_020163.1 COG3396 Uncharacterized conserved protein; phenylacetate-CoA oxygenase subunit PaaA 2197378 paaA 14482110 paaA Escherichia coli APEC O78 phenylacetate-CoA oxygenase subunit PaaA YP_007381308.1 2196449 D 1274814 CDS YP_007381309.1 443617453 14482111 2197390..2197677 1 NC_020163.1 COG3460 Uncharacterized enzyme of phenylacetate metabolism; phenylacetate-CoA oxygenase subunit PaaB 2197677 paaB 14482111 paaB Escherichia coli APEC O78 phenylacetate-CoA oxygenase subunit PaaB YP_007381309.1 2197390 D 1274814 CDS YP_007381310.1 443617454 14482112 2197686..2198432 1 NC_020163.1 COG3396 Uncharacterized conserved protein; putative multicomponent oxygenase/reductase subunit 2198432 14482112 APECO78_10685 Escherichia coli APEC O78 putative multicomponent oxygenase/reductase subunit YP_007381310.1 2197686 D 1274814 CDS YP_007381311.1 443617455 14482113 2198447..2198944 1 NC_020163.1 COG2151 Predicted metal-sulfur cluster biosynthetic enzyme; multicomponent oxygenase/reductase subunit 2198944 14482113 APECO78_10690 Escherichia coli APEC O78 multicomponent oxygenase/reductase subunit YP_007381311.1 2198447 D 1274814 CDS YP_007381312.1 443617456 14482114 2198952..2200022 1 NC_020163.1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; subunit of the phenylacetly-CoA oxygenase/reductase 2200022 14482114 APECO78_10695 Escherichia coli APEC O78 subunit of the phenylacetly-CoA oxygenase/reductase YP_007381312.1 2198952 D 1274814 CDS YP_007381313.1 443617457 14482115 2200019..2200786 1 NC_020163.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase-isomerase 2200786 14482115 APECO78_10700 Escherichia coli APEC O78 enoyl-CoA hydratase-isomerase YP_007381313.1 2200019 D 1274814 CDS YP_007381314.1 443617458 14482116 2200786..2201574 1 NC_020163.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase 2201574 14482116 APECO78_10705 Escherichia coli APEC O78 enoyl-CoA hydratase YP_007381314.1 2200786 D 1274814 CDS YP_007381315.1 443617459 14482117 2201576..2203003 1 NC_020163.1 COG1250 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxy-acyl-CoA dehydrogenase 2203003 14482117 APECO78_10710 Escherichia coli APEC O78 3-hydroxy-acyl-CoA dehydrogenase YP_007381315.1 2201576 D 1274814 CDS YP_007381316.1 443617460 14482118 2202993..2203415 1 NC_020163.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; thioesterase 2203415 14482118 APECO78_10715 Escherichia coli APEC O78 thioesterase YP_007381316.1 2202993 D 1274814 CDS YP_007381317.1 443617461 14482119 2203415..2204620 1 NC_020163.1 COG0183 Acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase 2204620 14482119 APECO78_10720 Escherichia coli APEC O78 beta-ketoadipyl CoA thiolase YP_007381317.1 2203415 D 1274814 CDS YP_007381318.1 443617462 14482120 2204647..2205960 1 NC_020163.1 COG1541 Coenzyme F390 synthetase; phenylacetate-CoA ligase 2205960 14482120 APECO78_10725 Escherichia coli APEC O78 phenylacetate-CoA ligase YP_007381318.1 2204647 D 1274814 CDS YP_007381319.1 443617463 14482121 2206061..2207011 1 NC_020163.1 COG3327 Phenylacetic acid-responsive transcriptional repressor; DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive 2207011 14482121 APECO78_10730 Escherichia coli APEC O78 DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive YP_007381319.1 2206061 D 1274814 CDS YP_007381320.1 443617464 14482122 2206993..2207583 1 NC_020163.1 COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; putative hexapeptide repeat acetyltransferase 2207583 14482122 APECO78_10735 Escherichia coli APEC O78 putative hexapeptide repeat acetyltransferase YP_007381320.1 2206993 D 1274814 CDS YP_007381321.1 443617465 14482123 2207815..2208675 1 NC_020163.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); oxidoreductase 2208675 14482123 APECO78_10740 Escherichia coli APEC O78 oxidoreductase YP_007381321.1 2207815 D 1274814 CDS YP_007381322.1 443617466 14482124 2208739..2211045 1 NC_020163.1 hypothetical protein 2211045 14482124 APECO78_10745 Escherichia coli APEC O78 hypothetical protein YP_007381322.1 2208739 D 1274814 CDS YP_007381323.1 443617467 14482125 2211216..2211821 1 NC_020163.1 COG0558 Phosphatidylglycerophosphate synthase; putative inner membrane protein 2211821 14482125 APECO78_10750 Escherichia coli APEC O78 putative inner membrane protein YP_007381323.1 2211216 D 1274814 CDS YP_007381324.1 443617468 14482126 2211821..2212717 1 NC_020163.1 COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase; putative CDP-diglyceride synthase 2212717 14482126 APECO78_10755 Escherichia coli APEC O78 putative CDP-diglyceride synthase YP_007381324.1 2211821 D 1274814 CDS YP_007381325.1 443617469 14482127 2212733..2214490 1 NC_020163.1 COG2267 Lysophospholipase; hydrolase 2214490 14482127 APECO78_10760 Escherichia coli APEC O78 hydrolase YP_007381325.1 2212733 D 1274814 CDS YP_007381326.1 443617470 14482128 2214480..2215166 1 NC_020163.1 COG0671 Membrane-associated phospholipid phosphatase; Putative enzyme YnbD 2215166 14482128 APECO78_10765 Escherichia coli APEC O78 Putative enzyme YnbD YP_007381326.1 2214480 D 1274814 CDS YP_007381327.1 443617471 14482129 2215194..2215796 1 NC_020163.1 COG0671 Membrane-associated phospholipid phosphatase; phosphatase, inner membrane protein 2215796 14482129 APECO78_10770 Escherichia coli APEC O78 phosphatase, inner membrane protein YP_007381327.1 2215194 D 1274814 CDS YP_007381328.1 443617472 14482130 complement(2215847..2216452) 1 NC_020163.1 COG1182 Acyl carrier protein phosphodiesterase; azoreductase 2216452 14482130 APECO78_10775 Escherichia coli APEC O78 azoreductase YP_007381328.1 2215847 R 1274814 CDS YP_007381329.1 443617473 14482131 2216710..2220555 1 NC_020163.1 COG1643 HrpA-like helicases; ATP-dependent RNA helicase HrpA 2220555 14482131 APECO78_10780 Escherichia coli APEC O78 ATP-dependent RNA helicase HrpA YP_007381329.1 2216710 D 1274814 CDS YP_007381330.1 443617474 14482132 2220827..2221627 1 NC_020163.1 COG1434 Uncharacterized conserved protein; hypothetical protein 2221627 14482132 APECO78_10785 Escherichia coli APEC O78 hypothetical protein YP_007381330.1 2220827 D 1274814 CDS YP_007381331.1 443617475 14482133 2221824..2223263 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase A 2223263 14482133 APECO78_10790 Escherichia coli APEC O78 aldehyde dehydrogenase A YP_007381331.1 2221824 D 1274814 CDS YP_007381332.1 443617476 14482134 complement(2223305..2224306) 1 NC_020163.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2224306 14482134 APECO78_10795 Escherichia coli APEC O78 glyceraldehyde-3-phosphate dehydrogenase YP_007381332.1 2223305 R 1274814 CDS YP_007381333.1 443617477 14482135 2224495..2225025 1 NC_020163.1 COG3038 Cytochrome B561; cytochrome b561 2225025 14482135 APECO78_10800 Escherichia coli APEC O78 cytochrome b561 YP_007381333.1 2224495 D 1274814 CDS YP_007381334.1 443617478 14482136 2225270..2225443 1 NC_020163.1 hypothetical protein 2225443 14482136 APECO78_10805 Escherichia coli APEC O78 hypothetical protein YP_007381334.1 2225270 D 1274814 CDS YP_007381335.1 443617479 14482137 complement(2225515..2225664) 1 NC_020163.1 small toxic polypeptide 2225664 14482137 APECO78_10810 Escherichia coli APEC O78 small toxic polypeptide YP_007381335.1 2225515 R 1274814 CDS YP_007381336.1 443617480 14482138 2226063..2227703 1 NC_020163.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor 2227703 14482138 APECO78_10815 Escherichia coli APEC O78 methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor YP_007381336.1 2226063 D 1274814 CDS YP_007381337.1 443617481 14482139 complement(2227741..2228664) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2228664 14482139 APECO78_10820 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007381337.1 2227741 R 1274814 CDS YP_007381338.1 443617482 14482140 2228881..2230224 1 NC_020163.1 COG5383 Uncharacterized protein conserved in bacteria; hypothetical protein 2230224 14482140 APECO78_10825 Escherichia coli APEC O78 hypothetical protein YP_007381338.1 2228881 D 1274814 CDS YP_007381339.1 443617483 14482141 2230449..2232104 1 NC_020163.1 COG3131 Periplasmic glucans biosynthesis protein; glucan biosynthesis protein D 2232104 mdoD 14482141 mdoD Escherichia coli APEC O78 glucan biosynthesis protein D YP_007381339.1 2230449 D 1274814 CDS YP_007381340.1 443617484 14482142 complement(2232025..2232228) 1 NC_020163.1 hypothetical protein 2232228 14482142 APECO78_10835 Escherichia coli APEC O78 hypothetical protein YP_007381340.1 2232025 R 1274814 CDS YP_007381341.1 443617485 14482143 2232244..2232468 1 NC_020163.1 COG2841 Uncharacterized protein conserved in bacteria; hypothetical protein 2232468 14482143 APECO78_10840 Escherichia coli APEC O78 hypothetical protein YP_007381341.1 2232244 D 1274814 CDS YP_007381342.1 443617486 14482144 2232531..2233067 1 NC_020163.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-L7/L12-serine acetyltransferase 2233067 14482144 APECO78_10845 Escherichia coli APEC O78 ribosomal-protein-L7/L12-serine acetyltransferase YP_007381342.1 2232531 D 1274814 CDS YP_007381343.1 443617487 14482145 complement(2233062..2234042) 1 NC_020163.1 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); enzyme 2234042 14482145 APECO78_10850 Escherichia coli APEC O78 enzyme YP_007381343.1 2233062 R 1274814 CDS YP_007381344.1 443617488 14482146 2234166..2235158 1 NC_020163.1 COG1275 Tellurite resistance protein and related permeases; potassium-tellurite ethidium and proflavin transporter 2235158 14482146 APECO78_10855 Escherichia coli APEC O78 potassium-tellurite ethidium and proflavin transporter YP_007381344.1 2234166 D 1274814 CDS YP_007381345.1 443617489 14482147 2235155..2235748 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; tellurite resistance protein TehB 2235748 14482147 APECO78_10860 Escherichia coli APEC O78 tellurite resistance protein TehB YP_007381345.1 2235155 D 1274814 CDS YP_007381346.1 443617490 14482148 2236051..2236719 1 NC_020163.1 hypothetical protein 2236719 14482148 APECO78_10865 Escherichia coli APEC O78 hypothetical protein YP_007381346.1 2236051 D 1274814 CDS YP_007381347.1 443617491 14482149 complement(2236737..2236904) 1 NC_020163.1 COG1943 Transposase and inactivated derivatives; Transposase, IS605 family protein 2236904 14482149 APECO78_10870 Escherichia coli APEC O78 Transposase, IS605 family protein YP_007381347.1 2236737 R 1274814 CDS YP_007381348.1 443617492 14482150 2237250..2238458 1 NC_020163.1 COG0675 Transposase and inactivated derivatives; putative transposase IS605 family protein 2238458 14482150 APECO78_10875 Escherichia coli APEC O78 putative transposase IS605 family protein YP_007381348.1 2237250 D 1274814 CDS YP_007381349.1 443617493 14482151 complement(2238498..2239673) 1 NC_020163.1 COG3135 Uncharacterized protein involved in benzoate metabolism; putative benzoate transporter 2239673 14482151 APECO78_10880 Escherichia coli APEC O78 putative benzoate transporter YP_007381349.1 2238498 R 1274814 CDS YP_007381350.1 443617494 14482152 2239765..2240301 1 NC_020163.1 COG1396 Predicted transcriptional regulators; DNA-binding transcriptional regulator 2240301 14482152 APECO78_10885 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007381350.1 2239765 D 1274814 CDS YP_007381351.1 443617495 14482153 2240374..2242335 1 NC_020163.1 COG0826 Collagenase and related proteases; putative collagenase 2242335 14482153 APECO78_10890 Escherichia coli APEC O78 putative collagenase YP_007381351.1 2240374 D 1274814 CDS YP_007381352.1 443617496 14482154 complement(2242427..2242657) 1 NC_020163.1 hypothetical protein 2242657 14482154 APECO78_10895 Escherichia coli APEC O78 hypothetical protein YP_007381352.1 2242427 R 1274814 CDS YP_007381353.1 443617497 14482155 2243058..2243495 1 NC_020163.1 COG1598 Uncharacterized conserved protein; DNA-binding transcriptional regulator 2243495 14482155 APECO78_10900 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007381353.1 2243058 D 1274814 CDS YP_007381354.1 443617498 14482156 2243574..2244980 1 NC_020163.1 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; DNA-binding transcriptional regulator 2244980 14482156 APECO78_10905 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007381354.1 2243574 D 1274814 CDS YP_007381355.1 443617499 14482157 2245225..2245557 1 NC_020163.1 COG0687 Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine ABC transporter substrate-binding protein 2245557 14482157 APECO78_10910 Escherichia coli APEC O78 spermidine/putrescine ABC transporter substrate-binding protein YP_007381355.1 2245225 D 1274814 CDS YP_007381356.1 443617500 14482158 2245532..2246371 1 NC_020163.1 COG0687 Spermidine/putrescine-binding periplasmic protein; putative spermidine/putrescine transporter subunit 2246371 14482158 APECO78_10915 Escherichia coli APEC O78 putative spermidine/putrescine transporter subunit YP_007381356.1 2245532 D 1274814 CDS YP_007381357.1 443617501 14482159 2246389..2247402 1 NC_020163.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; putative spermidine/putrescine transporter subunit 2247402 14482159 APECO78_10920 Escherichia coli APEC O78 putative spermidine/putrescine transporter subunit YP_007381357.1 2246389 D 1274814 CDS YP_007381358.1 443617502 14482160 2247403..2248344 1 NC_020163.1 COG1176 ABC-type spermidine/putrescine transport system, permease component I; ABC transporter permease 2248344 14482160 APECO78_10925 Escherichia coli APEC O78 ABC transporter permease YP_007381358.1 2247403 D 1274814 CDS YP_007381359.1 443617503 14482161 2248334..2249128 1 NC_020163.1 COG1177 ABC-type spermidine/putrescine transport system, permease component II; ABC transporter permease 2249128 14482161 APECO78_10930 Escherichia coli APEC O78 ABC transporter permease YP_007381359.1 2248334 D 1274814 CDS YP_007381360.1 443617504 14482162 2249150..2250574 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; gamma-aminobutyraldehyde dehydrogenase 2250574 14482162 APECO78_10935 Escherichia coli APEC O78 gamma-aminobutyraldehyde dehydrogenase YP_007381360.1 2249150 D 1274814 CDS YP_007381361.1 443617505 14482163 2250961..2251134 1 NC_020163.1 hypothetical protein 2251134 14482163 APECO78_10940 Escherichia coli APEC O78 hypothetical protein YP_007381361.1 2250961 D 1274814 CDS YP_007381362.1 443617506 14482164 2251220..2251453 1 NC_020163.1 hypothetical protein 2251453 14482164 APECO78_10945 Escherichia coli APEC O78 hypothetical protein YP_007381362.1 2251220 D 1274814 CDS YP_007381363.1 443617507 14482165 complement(2251454..2251903) 1 NC_020163.1 COG3238 Uncharacterized protein conserved in bacteria; inner membrane protein 2251903 14482165 APECO78_10950 Escherichia coli APEC O78 inner membrane protein YP_007381363.1 2251454 R 1274814 CDS YP_007381364.1 443617508 14482166 complement(2251900..2252418) 1 NC_020163.1 COG1247 Sortase and related acyltransferases; N-acetyltransferase GCN5 2252418 14482166 APECO78_10955 Escherichia coli APEC O78 N-acetyltransferase GCN5 YP_007381364.1 2251900 R 1274814 CDS YP_007381365.1 443617509 14482167 2252599..2253636 1 NC_020163.1 COG2130 Putative NADP-dependent oxidoreductases; putative oxidoreductase 2253636 14482167 APECO78_10960 Escherichia coli APEC O78 putative oxidoreductase YP_007381365.1 2252599 D 1274814 CDS YP_007381366.1 443617510 14482168 2253834..2254499 1 NC_020163.1 COG1802 Transcriptional regulators; colanic acid/biofilm transcriptional regulator 2254499 14482168 APECO78_10965 Escherichia coli APEC O78 colanic acid/biofilm transcriptional regulator YP_007381366.1 2253834 D 1274814 CDS YP_007381367.1 443617511 14482169 complement(2254535..2256637) 1 NC_020163.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; putative iron outer membrane receptor 2256637 14482169 APECO78_10970 Escherichia coli APEC O78 putative iron outer membrane receptor YP_007381367.1 2254535 R 1274814 CDS YP_007381368.1 443617512 14482170 2256879..2257940 1 NC_020163.1 COG3391 Uncharacterized conserved protein; hypothetical protein 2257940 14482170 APECO78_10975 Escherichia coli APEC O78 hypothetical protein YP_007381368.1 2256879 D 1274814 CDS YP_007381369.1 443617513 14482171 complement(2258055..2259554) 1 NC_020163.1 COG1113 Gamma-aminobutyrate permease and related permeases; L-asparagine permease 2259554 14482171 APECO78_10980 Escherichia coli APEC O78 L-asparagine permease YP_007381369.1 2258055 R 1274814 CDS YP_007381370.1 443617514 14482172 2259821..2260438 1 NC_020163.1 COG0625 Glutathione S-transferase; enzyme 2260438 14482172 APECO78_10985 Escherichia coli APEC O78 enzyme YP_007381370.1 2259821 D 1274814 CDS YP_007381371.1 443617515 14482173 2260514..2260726 1 NC_020163.1 hypothetical protein 2260726 14482173 APECO78_10990 Escherichia coli APEC O78 hypothetical protein YP_007381371.1 2260514 D 1274814 CDS YP_007381372.1 443617516 14482174 2261547..2263655 1 NC_020163.1 COG3501 Uncharacterized protein conserved in bacteria; ImpA family type VI secretion-associated protein 2263655 14482174 APECO78_10995 Escherichia coli APEC O78 ImpA family type VI secretion-associated protein YP_007381372.1 2261547 D 1274814 CDS YP_007381373.1 443617517 14482175 2263723..2267943 1 NC_020163.1 COG3209 Rhs family protein; RhsE core protein 2267943 14482175 APECO78_11000 Escherichia coli APEC O78 RhsE core protein YP_007381373.1 2263723 D 1274814 CDS YP_007381374.1 443617518 14482176 2267944..2268342 1 NC_020163.1 hypothetical protein 2268342 14482176 APECO78_11005 Escherichia coli APEC O78 hypothetical protein YP_007381374.1 2267944 D 1274814 CDS YP_007381375.1 443617519 14482177 2268987..2269127 1 NC_020163.1 hypothetical protein 2269127 14482177 APECO78_11010 Escherichia coli APEC O78 hypothetical protein YP_007381375.1 2268987 D 1274814 CDS YP_007381376.1 443617520 14482178 2269124..2269330 1 NC_020163.1 hypothetical protein 2269330 14482178 APECO78_11015 Escherichia coli APEC O78 hypothetical protein YP_007381376.1 2269124 D 1274814 CDS YP_007381377.1 443617521 14482179 2269734..2270525 1 NC_020163.1 COG5433 Transposase; transposase IS4 family protein 2270525 14482179 APECO78_11020 Escherichia coli APEC O78 transposase IS4 family protein YP_007381377.1 2269734 D 1274814 CDS YP_007381378.1 443617522 14482180 2270558..2270785 1 NC_020163.1 COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog; 4-oxalocrotonate tautomerase 2270785 14482180 APECO78_11025 Escherichia coli APEC O78 4-oxalocrotonate tautomerase YP_007381378.1 2270558 D 1274814 CDS YP_007381379.1 443617523 14482181 complement(2270789..2271358) 1 NC_020163.1 COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; hypothetical protein 2271358 14482181 APECO78_11030 Escherichia coli APEC O78 hypothetical protein YP_007381379.1 2270789 R 1274814 CDS YP_007381380.1 443617524 14482182 2271531..2272376 1 NC_020163.1 COG2162 Arylamine N-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 2272376 14482182 APECO78_11035 Escherichia coli APEC O78 N-hydroxyarylamine O-acetyltransferase YP_007381380.1 2271531 D 1274814 CDS YP_007381381.1 443617525 14482183 complement(2272472..2273365) 1 NC_020163.1 COG0384 Predicted epimerase, PhzC/PhzF homolog; hypothetical protein 2273365 14482183 APECO78_11040 Escherichia coli APEC O78 hypothetical protein YP_007381381.1 2272472 R 1274814 CDS YP_007381382.1 443617526 14482184 complement(2273444..2274124) 1 NC_020163.1 COG2181 Nitrate reductase gamma subunit; cryptic nitrate reductase 2 subunit gamma 2274124 14482184 APECO78_11045 Escherichia coli APEC O78 cryptic nitrate reductase 2 subunit gamma YP_007381382.1 2273444 R 1274814 CDS YP_007381383.1 443617527 14482185 complement(2274121..2274816) 1 NC_020163.1 COG2180 Nitrate reductase delta subunit; nitrate reductase 2274816 14482185 APECO78_11050 Escherichia coli APEC O78 nitrate reductase YP_007381383.1 2274121 R 1274814 CDS YP_007381384.1 443617528 14482186 complement(2274816..2276360) 1 NC_020163.1 COG1140 Nitrate reductase beta subunit; nitrate reductase Z subunit beta 2276360 narY 14482186 narY Escherichia coli APEC O78 nitrate reductase Z subunit beta YP_007381384.1 2274816 R 1274814 CDS YP_007381385.1 443617529 14482187 complement(2276357..2280097) 1 NC_020163.1 COG5013 Nitrate reductase alpha subunit; nitrate reductase 2 (NRZ), alpha subunit 2280097 14482187 APECO78_11060 Escherichia coli APEC O78 nitrate reductase 2 (NRZ), alpha subunit YP_007381385.1 2276357 R 1274814 CDS YP_007381386.1 443617530 14482188 complement(2280179..2281567) 1 NC_020163.1 COG2223 Nitrate/nitrite transporter; nitrate/nitrite transport protein NarU 2281567 14482188 APECO78_11065 Escherichia coli APEC O78 nitrate/nitrite transport protein NarU YP_007381386.1 2280179 R 1274814 CDS YP_007381387.1 443617531 14482189 complement(2281891..2282226) 1 NC_020163.1 putative T3SS effector-like protein 2282226 14482189 APECO78_11070 Escherichia coli APEC O78 putative T3SS effector-like protein YP_007381387.1 2281891 R 1274814 CDS YP_007381388.1 443617532 14482190 complement(2282265..2283221) 1 NC_020163.1 COG4886 Leucine-rich repeat (LRR) protein; putative LRR repeat protein 2283221 14482190 APECO78_11075 Escherichia coli APEC O78 putative LRR repeat protein YP_007381388.1 2282265 R 1274814 CDS YP_007381389.1 443617533 14482191 complement(2283245..2283535) 1 NC_020163.1 COG3203 Outer membrane protein (porin); lipoprotein 2283535 14482191 APECO78_11080 Escherichia coli APEC O78 lipoprotein YP_007381389.1 2283245 R 1274814 CDS YP_007381390.1 443617534 14482192 complement(2283794..2284675) 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; aromatic amino acid exporter 2284675 14482192 APECO78_11085 Escherichia coli APEC O78 aromatic amino acid exporter YP_007381390.1 2283794 R 1274814 CDS YP_007381391.1 443617535 14482193 2284907..2285494 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase-N subunit alpha 2285494 14482193 APECO78_11090 Escherichia coli APEC O78 formate dehydrogenase-N subunit alpha YP_007381391.1 2284907 D 1274814 CDS YP_007381392.1 443617536 14482194 2285543..2287954 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; formate dehydrogenase, nitrate-inducible, major subunit 2287954 14482194 APECO78_11095 Escherichia coli APEC O78 formate dehydrogenase, nitrate-inducible, major subunit YP_007381392.1 2285543 D 1274814 CDS YP_007381393.1 443617537 14482195 2287967..2288851 1 NC_020163.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; formate dehydrogenase-N subunit beta 2288851 14482195 APECO78_11100 Escherichia coli APEC O78 formate dehydrogenase-N subunit beta YP_007381393.1 2287967 D 1274814 CDS YP_007381394.1 443617538 14482196 2288844..2289497 1 NC_020163.1 COG2864 Cytochrome b subunit of formate dehydrogenase; Formate dehydrogenase-N gamma subunit 2289497 14482196 APECO78_11105 Escherichia coli APEC O78 Formate dehydrogenase-N gamma subunit YP_007381394.1 2288844 D 1274814 CDS YP_007381395.1 443617539 14482197 complement(2289904..2290188) 1 NC_020163.1 COG3093 Plasmid maintenance system antidote protein; DNA-binding transcriptional regulator 2290188 14482197 APECO78_11110 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007381395.1 2289904 R 1274814 CDS YP_007381396.1 443617540 14482198 complement(2290334..2291344) 1 NC_020163.1 COG1064 Zn-dependent alcohol dehydrogenases; ethanol-active dehydrogenase/acetaldehyde-active reductase 2291344 14482198 APECO78_11115 Escherichia coli APEC O78 ethanol-active dehydrogenase/acetaldehyde-active reductase YP_007381396.1 2290334 R 1274814 CDS YP_007381397.1 443617541 14482199 complement(2291478..2293175) 1 NC_020163.1 COG0281 Malic enzyme; malate dehydrogenase 2293175 14482199 APECO78_11120 Escherichia coli APEC O78 malate dehydrogenase YP_007381397.1 2291478 R 1274814 CDS YP_007381398.1 443617542 14482200 complement(2293332..2293469) 1 NC_020163.1 30S ribosomal subunit S22 2293469 14482200 APECO78_11125 Escherichia coli APEC O78 30S ribosomal subunit S22 YP_007381398.1 2293332 R 1274814 CDS YP_007381399.1 443617543 14482201 complement(2293571..2293786) 1 NC_020163.1 biofilm-dependent modulation protein 2293786 14482201 APECO78_11130 Escherichia coli APEC O78 biofilm-dependent modulation protein YP_007381399.1 2293571 R 1274814 CDS YP_007381400.1 443617544 14482202 2294131..2294562 1 NC_020163.1 COG1764 Predicted redox protein, regulator of disulfide bond formation; osmotically inducible, stress-inducible membrane protein OsmC 2294562 14482202 APECO78_11135 Escherichia coli APEC O78 osmotically inducible, stress-inducible membrane protein OsmC YP_007381400.1 2294131 D 1274814 CDS YP_007381401.1 443617545 14482203 complement(2294618..2295544) 1 NC_020163.1 COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; D-ala-D-ala transporter subunit 2295544 14482203 APECO78_11140 Escherichia coli APEC O78 D-ala-D-ala transporter subunit YP_007381401.1 2294618 R 1274814 CDS YP_007381402.1 443617546 14482204 complement(2295537..2296523) 1 NC_020163.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; D-ala-D-ala transporter subunit 2296523 14482204 APECO78_11145 Escherichia coli APEC O78 D-ala-D-ala transporter subunit YP_007381402.1 2295537 R 1274814 CDS YP_007381403.1 443617547 14482205 complement(2296520..2297416) 1 NC_020163.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; ATP-dependent peptide transporter membrane subunit 2297416 14482205 APECO78_11150 Escherichia coli APEC O78 ATP-dependent peptide transporter membrane subunit YP_007381403.1 2296520 R 1274814 CDS YP_007381404.1 443617548 14482206 complement(2297413..2298435) 1 NC_020163.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; binding-protein-dependent transport system inner membrane protein 2298435 14482206 APECO78_11155 Escherichia coli APEC O78 binding-protein-dependent transport system inner membrane protein YP_007381404.1 2297413 R 1274814 CDS YP_007381405.1 443617549 14482207 complement(2298437..2299987) 1 NC_020163.1 COG0747 ABC-type dipeptide transport system, periplasmic component; extracellular solute-binding protein 2299987 14482207 APECO78_11160 Escherichia coli APEC O78 extracellular solute-binding protein YP_007381405.1 2298437 R 1274814 CDS YP_007381406.1 443617550 14482208 complement(2300001..2300582) 1 NC_020163.1 COG2173 D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase 2300582 14482208 APECO78_11165 Escherichia coli APEC O78 D-alanyl-D-alanine dipeptidase YP_007381406.1 2300001 R 1274814 CDS YP_007381407.1 443617551 14482209 complement(2300840..2303239) 1 NC_020163.1 COG2202 FOG: PAS/PAC domain; cyclic-di-GMP phosphodiesterase 2303239 14482209 APECO78_11170 Escherichia coli APEC O78 cyclic-di-GMP phosphodiesterase YP_007381407.1 2300840 R 1274814 CDS YP_007381408.1 443617552 14482210 complement(2303264..2304646) 1 NC_020163.1 COG2199 FOG: GGDEF domain; diguanylate cyclase 2304646 14482210 APECO78_11175 Escherichia coli APEC O78 diguanylate cyclase YP_007381408.1 2303264 R 1274814 CDS YP_007381409.1 443617553 14482211 complement(2305023..2306342) 1 NC_020163.1 COG1649 Uncharacterized protein conserved in bacteria; hypothetical protein 2306342 14482211 APECO78_11180 Escherichia coli APEC O78 hypothetical protein YP_007381409.1 2305023 R 1274814 CDS YP_007381410.1 443617554 14482212 complement(2306473..2308008) 1 NC_020163.1 COG0531 Amino acid transporters; glutamate/gamma-aminobutyrate antiporter 2308008 14482212 APECO78_11185 Escherichia coli APEC O78 glutamate/gamma-aminobutyrate antiporter YP_007381410.1 2306473 R 1274814 CDS YP_007381411.1 443617555 14482213 complement(2308164..2309564) 1 NC_020163.1 COG0076 Glutamate decarboxylase and related PLP-dependent proteins; glutamate decarboxylase 2309564 14482213 APECO78_11190 Escherichia coli APEC O78 glutamate decarboxylase YP_007381411.1 2308164 R 1274814 CDS YP_007381412.1 443617556 14482214 complement(2309926..2312721) 1 NC_020163.1 COG0612 Predicted Zn-dependent peptidases; putative peptidase 2312721 14482214 APECO78_11195 Escherichia coli APEC O78 putative peptidase YP_007381412.1 2309926 R 1274814 CDS YP_007381413.1 443617557 14482215 complement(2312766..2315138) 1 NC_020163.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; hypothetical protein 2315138 14482215 APECO78_11200 Escherichia coli APEC O78 hypothetical protein YP_007381413.1 2312766 R 1274814 CDS YP_007381414.1 443617558 14482216 complement(2315176..2316861) 1 NC_020163.1 COG4178 ABC-type uncharacterized transport system, permease and ATPase components; putative ABC transporter ATP-binding protein 2316861 14482216 APECO78_11205 Escherichia coli APEC O78 putative ABC transporter ATP-binding protein YP_007381414.1 2315176 R 1274814 CDS YP_007381415.1 443617559 14482217 complement(2317152..2318189) 1 NC_020163.1 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); putative arylsulfatase-activating protein 2318189 14482217 APECO78_11210 Escherichia coli APEC O78 putative arylsulfatase-activating protein YP_007381415.1 2317152 R 1274814 CDS YP_007381416.1 443617560 14482218 complement(2318174..2319079) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 2319079 14482218 APECO78_11215 Escherichia coli APEC O78 IS2 transposase TnpB YP_007381416.1 2318174 R 1274814 CDS YP_007381417.1 443617561 14482219 complement(2319037..2319402) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 2319402 14482219 APECO78_11220 Escherichia coli APEC O78 IS2 repressor TnpA YP_007381417.1 2319037 R 1274814 CDS YP_007381418.1 443617562 14482220 complement(2319697..2321379) 1 NC_020163.1 COG3119 Arylsulfatase A and related enzymes; hypothetical protein 2321379 14482220 APECO78_11225 Escherichia coli APEC O78 hypothetical protein YP_007381418.1 2319697 R 1274814 CDS YP_007381419.1 443617563 14482221 complement(2321781..2322542) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator YdeO 2322542 14482221 APECO78_11230 Escherichia coli APEC O78 transcriptional regulator YdeO YP_007381419.1 2321781 R 1274814 CDS YP_007381420.1 443617564 14482222 complement(2322617..2322814) 1 NC_020163.1 hypothetical protein 2322814 14482222 APECO78_11235 Escherichia coli APEC O78 hypothetical protein YP_007381420.1 2322617 R 1274814 CDS YP_007381421.1 443617565 14482223 complement(2323062..2325005) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative oxidoreductase 2325005 14482223 APECO78_11240 Escherichia coli APEC O78 putative oxidoreductase YP_007381421.1 2323062 R 1274814 CDS YP_007381422.1 443617566 14482224 complement(2325117..2325341) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; oxidoreductase 2325341 14482224 APECO78_11245 Escherichia coli APEC O78 oxidoreductase YP_007381422.1 2325117 R 1274814 CDS YP_007381423.1 443617567 14482225 complement(2325675..2326589) 1 NC_020163.1 putative fimbrial-like exported adhesin protein 2326589 14482225 APECO78_11250 Escherichia coli APEC O78 putative fimbrial-like exported adhesin protein YP_007381423.1 2325675 R 1274814 CDS YP_007381424.1 443617568 14482226 complement(2326649..2327152) 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like adhesin exported protein 2327152 14482226 APECO78_11255 Escherichia coli APEC O78 putative fimbrial-like adhesin exported protein YP_007381424.1 2326649 R 1274814 CDS YP_007381425.1 443617569 14482227 complement(2327165..2327695) 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like adhesin exported protein 2327695 14482227 APECO78_11260 Escherichia coli APEC O78 putative fimbrial-like adhesin exported protein YP_007381425.1 2327165 R 1274814 CDS YP_007381426.1 443617570 14482228 complement(2327709..2330360) 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; putative fimbrial usher protein 2330360 14482228 APECO78_11265 Escherichia coli APEC O78 putative fimbrial usher protein YP_007381426.1 2327709 R 1274814 CDS YP_007381427.1 443617571 14482229 complement(2330402..2331112) 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein 2331112 14482229 APECO78_11270 Escherichia coli APEC O78 fimbrial chaperone protein YP_007381427.1 2330402 R 1274814 CDS YP_007381428.1 443617572 14482230 complement(2331473..2332036) 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; putative type 1 fimbrial protein 2332036 14482230 APECO78_11275 Escherichia coli APEC O78 putative type 1 fimbrial protein YP_007381428.1 2331473 R 1274814 CDS YP_007381429.1 443617573 14482231 complement(2332491..2332670) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; yneL 2332670 14482231 APECO78_11280 Escherichia coli APEC O78 yneL YP_007381429.1 2332491 R 1274814 CDS YP_007381430.1 443617574 14482232 complement(2332988..2334310) 1 NC_020163.1 COG3550 Uncharacterized protein related to capsule biosynthesis enzymes; regulator with hipB 2334310 14482232 APECO78_11285 Escherichia coli APEC O78 regulator with hipB YP_007381430.1 2332988 R 1274814 CDS YP_007381431.1 443617575 14482233 complement(2334310..2334576) 1 NC_020163.1 COG1396 Predicted transcriptional regulators; antitoxin HipB 2334576 14482233 APECO78_11290 Escherichia coli APEC O78 antitoxin HipB YP_007381431.1 2334310 R 1274814 CDS YP_007381432.1 443617576 14482234 complement(2334785..2340205) 1 NC_020163.1 COG5295 Autotransporter adhesin; lipoprotein/autotransporter domain-containing protein 2340205 14482234 APECO78_11295 Escherichia coli APEC O78 lipoprotein/autotransporter domain-containing protein YP_007381432.1 2334785 R 1274814 CDS YP_007381433.1 443617577 14482235 complement(2340736..2342328) 1 NC_020163.1 COG1070 Sugar (pentulose and hexulose) kinases; autoinducer-2 (AI-2) kinase 2342328 14482235 APECO78_11300 Escherichia coli APEC O78 autoinducer-2 (AI-2) kinase YP_007381433.1 2340736 R 1274814 CDS YP_007381434.1 443617578 14482236 complement(2342407..2343360) 1 NC_020163.1 COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain; transcriptional regulator LsrR 2343360 14482236 APECO78_11305 Escherichia coli APEC O78 transcriptional regulator LsrR YP_007381434.1 2342407 R 1274814 CDS YP_007381435.1 443617579 14482237 2343609..2345144 1 NC_020163.1 COG1129 ABC-type sugar transport system, ATPase component; autoinducer 2 ABC transporter ATP-binding protein LsrA 2345144 14482237 APECO78_11310 Escherichia coli APEC O78 autoinducer 2 ABC transporter ATP-binding protein LsrA YP_007381435.1 2343609 D 1274814 CDS YP_007381436.1 443617580 14482238 2345138..2346166 1 NC_020163.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; autoinducer 2 ABC transporter permease LsrC 2346166 14482238 APECO78_11315 Escherichia coli APEC O78 autoinducer 2 ABC transporter permease LsrC YP_007381436.1 2345138 D 1274814 CDS YP_007381437.1 443617581 14482239 2346166..2347158 1 NC_020163.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; autoinducer 2 import system permease LsrD 2347158 14482239 APECO78_11320 Escherichia coli APEC O78 autoinducer 2 import system permease LsrD YP_007381437.1 2346166 D 1274814 CDS YP_007381438.1 443617582 14482240 2347170..2348192 1 NC_020163.1 COG1879 ABC-type sugar transport system, periplasmic component; autoinducer 2-binding protein lsrB 2348192 14482240 APECO78_11325 Escherichia coli APEC O78 autoinducer 2-binding protein lsrB YP_007381438.1 2347170 D 1274814 CDS YP_007381439.1 443617583 14482241 2348219..2349094 1 NC_020163.1 COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; autoinducer 2 aldolase 2349094 14482241 APECO78_11330 Escherichia coli APEC O78 autoinducer 2 aldolase YP_007381439.1 2348219 D 1274814 CDS YP_007381440.1 443617584 14482242 2349118..2349408 1 NC_020163.1 COG1359 Uncharacterized conserved protein; autoinducer-2 (AI-2) modifying protein LsrG 2349408 14482242 APECO78_11335 Escherichia coli APEC O78 autoinducer-2 (AI-2) modifying protein LsrG YP_007381440.1 2349118 D 1274814 CDS YP_007381441.1 443617585 14482243 2349465..2350223 1 NC_020163.1 COG4106 Trans-aconitate methyltransferase; trans-aconitate 2-methyltransferase 2350223 14482243 APECO78_11340 Escherichia coli APEC O78 trans-aconitate 2-methyltransferase YP_007381441.1 2349465 D 1274814 CDS YP_007381442.1 443617586 14482244 complement(2350227..2351141) 1 NC_020163.1 COG3781 Predicted membrane protein; hypothetical protein 2351141 14482244 APECO78_11345 Escherichia coli APEC O78 hypothetical protein YP_007381442.1 2350227 R 1274814 CDS YP_007381443.1 443617587 14482245 complement(2351348..2352799) 1 NC_020163.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; altronate oxidoreductase 2352799 14482245 APECO78_11350 Escherichia coli APEC O78 altronate oxidoreductase YP_007381443.1 2351348 R 1274814 CDS YP_007381444.1 443617588 14482246 complement(2353026..2353973) 1 NC_020163.1 COG2199 FOG: GGDEF domain; hypothetical protein 2353973 14482246 APECO78_11355 Escherichia coli APEC O78 hypothetical protein YP_007381444.1 2353026 R 1274814 CDS YP_007381445.1 443617589 14482247 complement(2354294..2354443) 1 NC_020163.1 hypothetical protein 2354443 14482247 APECO78_11360 Escherichia coli APEC O78 hypothetical protein YP_007381445.1 2354294 R 1274814 CDS YP_007381446.1 443617590 14482248 complement(2354582..2354941) 1 NC_020163.1 hypothetical protein 2354941 14482248 APECO78_11365 Escherichia coli APEC O78 hypothetical protein YP_007381446.1 2354582 R 1274814 CDS YP_007381447.1 443617591 14482249 complement(2354941..2355867) 1 NC_020163.1 COG2066 Glutaminase; glutaminase 2355867 14482249 APECO78_11370 Escherichia coli APEC O78 glutaminase YP_007381447.1 2354941 R 1274814 CDS YP_007381448.1 443617592 14482250 complement(2355931..2357319) 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; succinate semialdehyde dehydrogenase 2357319 14482250 APECO78_11375 Escherichia coli APEC O78 succinate semialdehyde dehydrogenase YP_007381448.1 2355931 R 1274814 CDS YP_007381449.1 443617593 14482251 2357420..2358301 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2358301 14482251 APECO78_11380 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007381449.1 2357420 D 1274814 CDS YP_007381450.1 443617594 14482252 2358786..2359493 1 NC_020163.1 hypothetical protein 2359493 14482252 APECO78_11385 Escherichia coli APEC O78 hypothetical protein YP_007381450.1 2358786 D 1274814 CDS YP_007381451.1 443617595 14482253 2359643..2360833 1 NC_020163.1 COG2814 Arabinose efflux permease; arabinose transporter 2360833 14482253 APECO78_11390 Escherichia coli APEC O78 arabinose transporter YP_007381451.1 2359643 D 1274814 CDS YP_007381452.1 443617596 14482254 complement(2360858..2361523) 1 NC_020163.1 COG2095 Multiple antibiotic transporter; inner membrane protein 2361523 14482254 APECO78_11395 Escherichia coli APEC O78 inner membrane protein YP_007381452.1 2360858 R 1274814 CDS YP_007381453.1 443617597 14482255 2361735..2362169 1 NC_020163.1 COG1846 Transcriptional regulators; DNA-binding transcriptional repressor MarR 2362169 14482255 APECO78_11400 Escherichia coli APEC O78 DNA-binding transcriptional repressor MarR YP_007381453.1 2361735 D 1274814 CDS YP_007381454.1 443617598 14482256 2362189..2362572 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; Multiple antibiotic resistance protein marA 2362572 14482256 APECO78_11405 Escherichia coli APEC O78 Multiple antibiotic resistance protein marA YP_007381454.1 2362189 D 1274814 CDS YP_007381455.1 443617599 14482257 2362604..2362822 1 NC_020163.1 hypothetical protein 2362822 14482257 APECO78_11410 Escherichia coli APEC O78 hypothetical protein YP_007381455.1 2362604 D 1274814 CDS YP_007381456.1 443617600 14482258 complement(2362918..2364318) 1 NC_020163.1 COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; 6-phospho-beta-glucosidase 2364318 celA 14482258 celA Escherichia coli APEC O78 6-phospho-beta-glucosidase YP_007381456.1 2362918 R 1274814 CDS YP_007381457.1 443617601 14482259 complement(2364343..2366016) 1 NC_020163.1 COG0789 Predicted transcriptional regulators; putative outer membrane protein 2366016 14482259 APECO78_11420 Escherichia coli APEC O78 putative outer membrane protein YP_007381457.1 2364343 R 1274814 CDS YP_007381458.1 443617602 14482260 complement(2366072..2366383) 1 NC_020163.1 COG1447 Phosphotransferase system cellobiose-specific component IIA; PTS system cellobiose-specific transporter subunit IIA 2366383 14482260 APECO78_11425 Escherichia coli APEC O78 PTS system cellobiose-specific transporter subunit IIA YP_007381458.1 2366072 R 1274814 CDS YP_007381459.1 443617603 14482261 complement(2366411..2367733) 1 NC_020163.1 COG1455 Phosphotransferase system cellobiose-specific component IIC; PTS system cellobiose-specific transporter subunit IIC 2367733 14482261 APECO78_11430 Escherichia coli APEC O78 PTS system cellobiose-specific transporter subunit IIC YP_007381459.1 2366411 R 1274814 CDS YP_007381460.1 443617604 14482262 complement(2367848..2368159) 1 NC_020163.1 COG1440 Phosphotransferase system cellobiose-specific component IIB; PTS system cellobiose-specific transporter subunit IIB 2368159 14482262 APECO78_11435 Escherichia coli APEC O78 PTS system cellobiose-specific transporter subunit IIB YP_007381460.1 2367848 R 1274814 CDS YP_007381461.1 443617605 14482263 2368358..2369056 1 NC_020163.1 COG2188 Transcriptional regulators; transcriptional regulator 2369056 14482263 APECO78_11440 Escherichia coli APEC O78 transcriptional regulator YP_007381461.1 2368358 D 1274814 CDS YP_007381462.1 443617606 14482264 complement(2369101..2370000) 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; O-acetylserine/cysteine export protein 2370000 14482264 APECO78_11445 Escherichia coli APEC O78 O-acetylserine/cysteine export protein YP_007381462.1 2369101 R 1274814 CDS YP_007381463.1 443617607 14482265 2370195..2371382 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 2371382 14482265 APECO78_11450 Escherichia coli APEC O78 transporter YP_007381463.1 2370195 D 1274814 CDS YP_007381464.1 443617608 14482266 2371509..2371604 1 NC_020163.1 hypothetical protein 2371604 14482266 APECO78_11455 Escherichia coli APEC O78 hypothetical protein YP_007381464.1 2371509 D 1274814 CDS YP_007381465.1 443617609 14482267 complement(2371823..2372713) 1 NC_020163.1 COG2199 FOG: GGDEF domain; diguanylate cyclase 2372713 14482267 APECO78_11460 Escherichia coli APEC O78 diguanylate cyclase YP_007381465.1 2371823 R 1274814 CDS YP_007381466.1 443617610 14482268 complement(2372968..2373360) 1 NC_020163.1 COG3111 Uncharacterized conserved protein; hypothetical protein 2373360 14482268 APECO78_11465 Escherichia coli APEC O78 hypothetical protein YP_007381466.1 2372968 R 1274814 CDS YP_007381467.1 443617611 14482269 2373636..2374154 1 NC_020163.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced); hypothetical protein 2374154 14482269 APECO78_11470 Escherichia coli APEC O78 hypothetical protein YP_007381467.1 2373636 D 1274814 CDS YP_007381468.1 443617612 14482270 complement(2374199..2376244) 1 NC_020163.1 COG0339 Zn-dependent oligopeptidases; dipeptidyl carboxypeptidase II 2376244 14482270 APECO78_11475 Escherichia coli APEC O78 dipeptidyl carboxypeptidase II YP_007381468.1 2374199 R 1274814 CDS YP_007381469.1 443617613 14482271 2376381..2377127 1 NC_020163.1 COG4221 Short-chain alcohol dehydrogenase of unknown specificity; 3-hydroxy acid dehydrogenase 2377127 14482271 APECO78_11480 Escherichia coli APEC O78 3-hydroxy acid dehydrogenase YP_007381469.1 2376381 D 1274814 CDS YP_007381470.1 443617614 14482272 2377216..2377902 1 NC_020163.1 COG1802 Transcriptional regulators; hypothetical protein 2377902 14482272 APECO78_11485 Escherichia coli APEC O78 hypothetical protein YP_007381470.1 2377216 D 1274814 CDS YP_007381471.1 443617615 14482273 2378080..2378283 1 NC_020163.1 selenoprotein ydfZ 2378283 14482273 APECO78_11490 Escherichia coli APEC O78 selenoprotein ydfZ YP_007381471.1 2378080 D 1274814 CDS YP_007381472.1 443617616 14482274 complement(2378319..2379779) 1 NC_020163.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; oxidoreductase 2379779 14482274 APECO78_11495 Escherichia coli APEC O78 oxidoreductase YP_007381472.1 2378319 R 1274814 CDS YP_007381473.1 443617617 14482275 complement(2379868..2381151) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily protein 2381151 14482275 APECO78_11500 Escherichia coli APEC O78 major facilitator superfamily protein YP_007381473.1 2379868 R 1274814 CDS YP_007381474.1 443617618 14482276 2381902..2382168 1 NC_020163.1 Qin prophage DNA-binding transcriptional regulator 2382168 14482276 APECO78_11505 Escherichia coli APEC O78 Qin prophage DNA-binding transcriptional regulator YP_007381474.1 2381902 D 1274814 CDS YP_007381475.1 443617619 14482277 2382486..2383076 1 NC_020163.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; putative DNA-invertase 2383076 14482277 APECO78_11510 Escherichia coli APEC O78 putative DNA-invertase YP_007381475.1 2382486 D 1274814 CDS YP_007381476.1 443617620 14482278 complement(2383174..2383749) 1 NC_020163.1 putative tail fiber chaperone; Qin prophage 2383749 14482278 APECO78_11515 Escherichia coli APEC O78 putative tail fiber chaperone; Qin prophage YP_007381476.1 2383174 R 1274814 CDS YP_007381477.1 443617621 14482279 complement(2383749..2384549) 1 NC_020163.1 prophage tail fiber domain-containing protein 2384549 14482279 APECO78_11520 Escherichia coli APEC O78 prophage tail fiber domain-containing protein YP_007381477.1 2383749 R 1274814 CDS YP_007381478.1 443617622 14482280 complement(2384654..2385421) 1 NC_020163.1 COG0740 Protease subunit of ATP-dependent Clp proteases; putative ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) 2385421 14482280 APECO78_11525 Escherichia coli APEC O78 putative ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) YP_007381478.1 2384654 R 1274814 CDS YP_007381479.1 443617623 14482281 complement(2385435..2386943) 1 NC_020163.1 COG5511 Bacteriophage capsid protein; putative portal protein 2386943 14482281 APECO78_11530 Escherichia coli APEC O78 putative portal protein YP_007381479.1 2385435 R 1274814 CDS YP_007381480.1 443617624 14482282 complement(2386943..2387155) 1 NC_020163.1 hypothetical protein 2387155 14482282 APECO78_11535 Escherichia coli APEC O78 hypothetical protein YP_007381480.1 2386943 R 1274814 CDS YP_007381481.1 443617625 14482283 complement(2387152..2389185) 1 NC_020163.1 COG5525 Bacteriophage tail assembly protein; terminase large subunit 2389185 14482283 APECO78_11540 Escherichia coli APEC O78 terminase large subunit YP_007381481.1 2387152 R 1274814 CDS YP_007381482.1 443617626 14482284 complement(2389260..2389787) 1 NC_020163.1 putative terminase small subunit 2389787 14482284 APECO78_11545 Escherichia coli APEC O78 putative terminase small subunit YP_007381482.1 2389260 R 1274814 CDS YP_007381483.1 443617627 14482285 complement(2390352..2390558) 1 NC_020163.1 hypothetical protein 2390558 14482285 APECO78_11550 Escherichia coli APEC O78 hypothetical protein YP_007381483.1 2390352 R 1274814 CDS YP_007381484.1 443617628 14482286 2390859..2391269 1 NC_020163.1 COG5562 Phage envelope protein; hypothetical protein 2391269 14482286 APECO78_11555 Escherichia coli APEC O78 hypothetical protein YP_007381484.1 2390859 D 1274814 CDS YP_007381485.1 443617629 14482287 complement(2391421..2391594) 1 NC_020163.1 hypothetical protein 2391594 14482287 APECO78_11560 Escherichia coli APEC O78 hypothetical protein YP_007381485.1 2391421 R 1274814 CDS YP_007381486.1 443617630 14482288 complement(2391766..2391921) 1 NC_020163.1 hypothetical protein 2391921 14482288 APECO78_11565 Escherichia coli APEC O78 hypothetical protein YP_007381486.1 2391766 R 1274814 CDS YP_007381487.1 443617631 14482289 complement(2392268..2392480) 1 NC_020163.1 COG1278 Cold shock proteins; cold shock DNA-binding protein 2392480 14482289 APECO78_11570 Escherichia coli APEC O78 cold shock DNA-binding protein YP_007381487.1 2392268 R 1274814 CDS YP_007381488.1 443617632 14482290 complement(2392844..2393341) 1 NC_020163.1 hypothetical protein 2393341 14482290 APECO78_11575 Escherichia coli APEC O78 hypothetical protein YP_007381488.1 2392844 R 1274814 CDS YP_007381489.1 443617633 14482291 complement(2393338..2393871) 1 NC_020163.1 COG3772 Phage-related lysozyme (muraminidase); lysozyme 2393871 14482291 APECO78_11580 Escherichia coli APEC O78 lysozyme YP_007381489.1 2393338 R 1274814 CDS YP_007381490.1 443617634 14482292 complement(2393868..2394155) 1 NC_020163.1 hypothetical protein 2394155 14482292 APECO78_11585 Escherichia coli APEC O78 hypothetical protein YP_007381490.1 2393868 R 1274814 CDS YP_007381491.1 443617635 14482293 complement(2394184..2394399) 1 NC_020163.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; prophage lysis protein 2394399 14482293 APECO78_11590 Escherichia coli APEC O78 prophage lysis protein YP_007381491.1 2394184 R 1274814 CDS YP_007381492.1 443617636 14482294 complement(2395153..2395368) 1 NC_020163.1 COG1278 Cold shock proteins; cold shock-like protein cspB 2395368 14482294 APECO78_11595 Escherichia coli APEC O78 cold shock-like protein cspB YP_007381492.1 2395153 R 1274814 CDS YP_007381493.1 443617637 14482295 2395669..2395881 1 NC_020163.1 COG1278 Cold shock proteins; cold shock-like protein CspF 2395881 14482295 APECO78_11600 Escherichia coli APEC O78 cold shock-like protein CspF YP_007381493.1 2395669 D 1274814 CDS YP_007381494.1 443617638 14482296 complement(2396303..2397055) 1 NC_020163.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; Qin prophage; putative antitermination protein Q 2397055 14482296 APECO78_11605 Escherichia coli APEC O78 Qin prophage; putative antitermination protein Q YP_007381494.1 2396303 R 1274814 CDS YP_007381495.1 443617639 14482297 complement(2397069..2398118) 1 NC_020163.1 hypothetical protein 2398118 14482297 APECO78_11610 Escherichia coli APEC O78 hypothetical protein YP_007381495.1 2397069 R 1274814 CDS YP_007381496.1 443617640 14482298 complement(2398857..2399012) 1 NC_020163.1 putative prophage maintenance protein 2399012 14482298 APECO78_11615 Escherichia coli APEC O78 putative prophage maintenance protein YP_007381496.1 2398857 R 1274814 CDS YP_007381497.1 443617641 14482299 complement(2399599..2400624) 1 NC_020163.1 hypothetical protein 2400624 14482299 APECO78_11620 Escherichia coli APEC O78 hypothetical protein YP_007381497.1 2399599 R 1274814 CDS YP_007381498.1 443617642 14482300 complement(2400852..2401151) 1 NC_020163.1 hypothetical protein 2401151 14482300 APECO78_11625 Escherichia coli APEC O78 hypothetical protein YP_007381498.1 2400852 R 1274814 CDS YP_007381499.1 443617643 14482301 complement(2401246..2402151) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 2402151 14482301 APECO78_11630 Escherichia coli APEC O78 IS2 transposase TnpB YP_007381499.1 2401246 R 1274814 CDS YP_007381500.1 443617644 14482302 complement(2402109..2402474) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 2402474 14482302 APECO78_11635 Escherichia coli APEC O78 IS2 repressor TnpA YP_007381500.1 2402109 R 1274814 CDS YP_007381501.1 443617645 14482303 complement(2402654..2403724) 1 NC_020163.1 hypothetical protein 2403724 14482303 APECO78_11640 Escherichia coli APEC O78 hypothetical protein YP_007381501.1 2402654 R 1274814 CDS YP_007381502.1 443617646 14482304 complement(2403796..2404221) 1 NC_020163.1 hypothetical protein 2404221 14482304 APECO78_11645 Escherichia coli APEC O78 hypothetical protein YP_007381502.1 2403796 R 1274814 CDS YP_007381503.1 443617647 14482305 complement(2404205..2404486) 1 NC_020163.1 hypothetical protein 2404486 14482305 APECO78_11650 Escherichia coli APEC O78 hypothetical protein YP_007381503.1 2404205 R 1274814 CDS YP_007381504.1 443617648 14482306 2404587..2405006 1 NC_020163.1 hypothetical protein 2405006 14482306 APECO78_11655 Escherichia coli APEC O78 hypothetical protein YP_007381504.1 2404587 D 1274814 CDS YP_007381505.1 443617649 14482307 2405272..2405427 1 NC_020163.1 hypothetical protein 2405427 14482307 APECO78_11660 Escherichia coli APEC O78 hypothetical protein YP_007381505.1 2405272 D 1274814 CDS YP_007381506.1 443617650 14482308 2405429..2405557 1 NC_020163.1 hypothetical protein 2405557 14482308 APECO78_11665 Escherichia coli APEC O78 hypothetical protein YP_007381506.1 2405429 D 1274814 CDS YP_007381507.1 443617651 14482309 2405587..2405805 1 NC_020163.1 hypothetical protein 2405805 14482309 APECO78_11670 Escherichia coli APEC O78 hypothetical protein YP_007381507.1 2405587 D 1274814 CDS YP_007381508.1 443617652 14482310 2406269..2406562 1 NC_020163.1 regulator of cell division encoded by prophage 2406562 14482310 APECO78_11675 Escherichia coli APEC O78 regulator of cell division encoded by prophage YP_007381508.1 2406269 D 1274814 CDS YP_007381509.1 443617653 14482311 2406559..2406750 1 NC_020163.1 hypothetical protein 2406750 14482311 APECO78_11680 Escherichia coli APEC O78 hypothetical protein YP_007381509.1 2406559 D 1274814 CDS YP_007381510.1 443617654 14482312 2406843..2409314 1 NC_020163.1 hypothetical protein 2409314 14482312 APECO78_11685 Escherichia coli APEC O78 hypothetical protein YP_007381510.1 2406843 D 1274814 CDS YP_007381511.1 443617655 14482313 2409387..2409638 1 NC_020163.1 excisionase 2409638 14482313 APECO78_11690 Escherichia coli APEC O78 excisionase YP_007381511.1 2409387 D 1274814 CDS YP_007381512.1 443617656 14482314 2409658..2410953 1 NC_020163.1 COG0582 Integrase; defective integrase; Qin prophage 2410953 14482314 APECO78_11695 Escherichia coli APEC O78 defective integrase; Qin prophage YP_007381512.1 2409658 D 1274814 CDS YP_007381513.1 443617657 14482315 complement(2411141..2412160) 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase 2412160 14482315 APECO78_11700 Escherichia coli APEC O78 oxidoreductase YP_007381513.1 2411141 R 1274814 CDS YP_007381514.1 443617658 14482316 complement(2412172..2413386) 1 NC_020163.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; bifunctional D-altronate/D-mannonate dehydratase 2413386 14482316 APECO78_11705 Escherichia coli APEC O78 bifunctional D-altronate/D-mannonate dehydratase YP_007381514.1 2412172 R 1274814 CDS YP_007381515.1 443617659 14482317 complement(2413592..2413918) 1 NC_020163.1 COG1742 Uncharacterized conserved protein; hypothetical protein 2413918 14482317 APECO78_11710 Escherichia coli APEC O78 hypothetical protein YP_007381515.1 2413592 R 1274814 CDS YP_007381516.1 443617660 14482318 2414053..2414394 1 NC_020163.1 hypothetical protein 2414394 14482318 APECO78_11715 Escherichia coli APEC O78 hypothetical protein YP_007381516.1 2414053 D 1274814 CDS YP_007381517.1 443617661 14482319 2414429..2414989 1 NC_020163.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; spermidine N1-acetyltransferase 2414989 14482319 APECO78_11720 Escherichia coli APEC O78 spermidine N1-acetyltransferase YP_007381517.1 2414429 D 1274814 CDS YP_007381518.1 443617662 14482320 complement(2414992..2415702) 1 NC_020163.1 lipoprotein 2415702 14482320 APECO78_11725 Escherichia coli APEC O78 lipoprotein YP_007381518.1 2414992 R 1274814 CDS YP_007381519.1 443617663 14482321 2415810..2416115 1 NC_020163.1 hypothetical protein 2416115 14482321 APECO78_11730 Escherichia coli APEC O78 hypothetical protein YP_007381519.1 2415810 D 1274814 CDS YP_007381520.1 443617664 14482322 2416314..2418740 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; putative dimethyl sulfoxide reductase major subunit 2418740 14482322 APECO78_11735 Escherichia coli APEC O78 putative dimethyl sulfoxide reductase major subunit YP_007381520.1 2416314 D 1274814 CDS YP_007381521.1 443617665 14482323 2418801..2421224 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; oxidoreductase subunit 2421224 14482323 APECO78_11740 Escherichia coli APEC O78 oxidoreductase subunit YP_007381521.1 2418801 D 1274814 CDS YP_007381522.1 443617666 14482324 2421235..2421852 1 NC_020163.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; putative oxidoreductase Fe-S subunit 2421852 14482324 APECO78_11745 Escherichia coli APEC O78 putative oxidoreductase Fe-S subunit YP_007381522.1 2421235 D 1274814 CDS YP_007381523.1 443617667 14482325 2421854..2422708 1 NC_020163.1 COG3302 DMSO reductase anchor subunit; oxidoreductase, membrane subunit 2422708 14482325 APECO78_11750 Escherichia coli APEC O78 oxidoreductase, membrane subunit YP_007381523.1 2421854 D 1274814 CDS YP_007381524.1 443617668 14482326 2422751..2423365 1 NC_020163.1 COG3381 Uncharacterized component of anaerobic dehydrogenases; Twin-arginine leader-binding protein dmsD 2423365 14482326 APECO78_11755 Escherichia coli APEC O78 Twin-arginine leader-binding protein dmsD YP_007381524.1 2422751 D 1274814 CDS YP_007381525.1 443617669 14482327 2423560..2424816 1 NC_020163.1 COG0038 Chloride channel protein EriC; Putative chloride channel 2424816 14482327 APECO78_11760 Escherichia coli APEC O78 Putative chloride channel YP_007381525.1 2423560 D 1274814 CDS YP_007381526.1 443617670 14482328 complement(2424769..2425464) 1 NC_020163.1 COG0132 Dethiobiotin synthetase; putative dithiobiotin synthetase 2425464 14482328 APECO78_11765 Escherichia coli APEC O78 putative dithiobiotin synthetase YP_007381526.1 2424769 R 1274814 CDS YP_007381527.1 443617671 14482329 complement(2425589..2426809) 1 NC_020163.1 COG1940 Transcriptional regulator/sugar kinase; DNA-binding transcriptional repressor DgsA 2426809 14482329 APECO78_11770 Escherichia coli APEC O78 DNA-binding transcriptional repressor DgsA YP_007381527.1 2425589 R 1274814 CDS YP_007381528.1 443617672 14482330 complement(2426944..2427837) 1 NC_020163.1 COG0583 Transcriptional regulator; putative transcriptional regulator LYSR-type 2427837 14482330 APECO78_11775 Escherichia coli APEC O78 putative transcriptional regulator LYSR-type YP_007381528.1 2426944 R 1274814 CDS YP_007381529.1 443617673 14482331 2427944..2429197 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative transporter 2429197 14482331 APECO78_11780 Escherichia coli APEC O78 putative transporter YP_007381529.1 2427944 D 1274814 CDS YP_007381530.1 443617674 14482332 2429621..2429929 1 NC_020163.1 acid shock protein precursor 2429929 14482332 APECO78_11785 Escherichia coli APEC O78 acid shock protein precursor YP_007381530.1 2429621 D 1274814 CDS YP_007381531.1 443617675 14482333 2430022..2430105 1 NC_020163.1 hypothetical protein 2430105 14482333 APECO78_11790 Escherichia coli APEC O78 hypothetical protein YP_007381531.1 2430022 D 1274814 CDS YP_007381532.1 443617676 14482334 2430205..2431026 1 NC_020163.1 COG3591 V8-like Glu-specific endopeptidase; putative peptidase 2431026 14482334 APECO78_11795 Escherichia coli APEC O78 putative peptidase YP_007381532.1 2430205 D 1274814 CDS YP_007381533.1 443617677 14482335 complement(2431065..2431394) 1 NC_020163.1 COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtI 2431394 14482335 APECO78_11800 Escherichia coli APEC O78 multidrug efflux system protein MdtI YP_007381533.1 2431065 R 1274814 CDS YP_007381534.1 443617678 14482336 complement(2431381..2431746) 1 NC_020163.1 COG2076 Membrane transporters of cations and cationic drugs; multidrug efflux system protein MdtJ 2431746 14482336 APECO78_11805 Escherichia coli APEC O78 multidrug efflux system protein MdtJ YP_007381534.1 2431381 R 1274814 CDS YP_007381535.1 443617679 14482337 2432158..2433192 1 NC_020163.1 COG0628 Predicted permease; putative transport protein 2433192 14482337 APECO78_11810 Escherichia coli APEC O78 putative transport protein YP_007381535.1 2432158 D 1274814 CDS YP_007381536.1 443617680 14482338 complement(2433217..2434605) 1 NC_020163.1 COG1282 NAD/NADP transhydrogenase beta subunit; pyridine nucleotide transhydrogenase 2434605 14482338 APECO78_11815 Escherichia coli APEC O78 pyridine nucleotide transhydrogenase YP_007381536.1 2433217 R 1274814 CDS YP_007381537.1 443617681 14482339 complement(2434616..2436148) 1 NC_020163.1 COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(P) transhydrogenase subunit alpha 2436148 pntA 14482339 pntA Escherichia coli APEC O78 NAD(P) transhydrogenase subunit alpha YP_007381537.1 2434616 R 1274814 CDS YP_007381538.1 443617682 14482340 2436672..2437616 1 NC_020163.1 hypothetical protein 2437616 14482340 APECO78_11825 Escherichia coli APEC O78 hypothetical protein YP_007381538.1 2436672 D 1274814 CDS YP_007381539.1 443617683 14482341 2437802..2439184 1 NC_020163.1 COG0531 Amino acid transporters; putative arginine/ornithine transport protein 2439184 14482341 APECO78_11830 Escherichia coli APEC O78 putative arginine/ornithine transport protein YP_007381539.1 2437802 D 1274814 CDS YP_007381540.1 443617684 14482342 2439221..2439943 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase 2439943 14482342 APECO78_11835 Escherichia coli APEC O78 short chain dehydrogenase YP_007381540.1 2439221 D 1274814 CDS YP_007381541.1 443617685 14482343 complement(2439940..2440275) 1 NC_020163.1 COG3136 Uncharacterized membrane protein required for alginate biosynthesis; GlpM family protein 2440275 14482343 APECO78_11840 Escherichia coli APEC O78 GlpM family protein YP_007381541.1 2439940 R 1274814 CDS YP_007381542.1 443617686 14482344 2440404..2441123 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 2441123 14482344 APECO78_11845 Escherichia coli APEC O78 two-component response regulator YP_007381542.1 2440404 D 1274814 CDS YP_007381543.1 443617687 14482345 2441127..2442428 1 NC_020163.1 COG0642 Signal transduction histidine kinase; sensor protein RstB 2442428 14482345 APECO78_11850 Escherichia coli APEC O78 sensor protein RstB YP_007381543.1 2441127 D 1274814 CDS YP_007381544.1 443617688 14482346 2442504..2443433 1 NC_020163.1 inhibitor of replication at Ter, DNA-binding protein 2443433 14482346 APECO78_11855 Escherichia coli APEC O78 inhibitor of replication at Ter, DNA-binding protein YP_007381544.1 2442504 D 1274814 CDS YP_007381545.1 443617689 14482347 complement(2443430..2444833) 1 NC_020163.1 COG0114 Fumarase; fumarate hydratase 2444833 fumC 14482347 fumC Escherichia coli APEC O78 fumarate hydratase YP_007381545.1 2443430 R 1274814 CDS YP_007381546.1 443617690 14482348 complement(2444976..2446622) 1 NC_020163.1 COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; fumarate hydratase class I 2446622 14482348 APECO78_11865 Escherichia coli APEC O78 fumarate hydratase class I YP_007381546.1 2444976 R 1274814 CDS YP_007381547.1 443617691 14482349 2446821..2447996 1 NC_020163.1 COG1482 Phosphomannose isomerase; mannose-6-phosphate isomerase 2447996 14482349 APECO78_11870 Escherichia coli APEC O78 mannose-6-phosphate isomerase YP_007381547.1 2446821 D 1274814 CDS YP_007381548.1 443617692 14482350 2448097..2449605 1 NC_020163.1 COG5339 Uncharacterized protein conserved in bacteria; hypothetical protein 2449605 14482350 APECO78_11875 Escherichia coli APEC O78 hypothetical protein YP_007381548.1 2448097 D 1274814 CDS YP_007381549.1 443617693 14482351 complement(2449650..2450915) 1 NC_020163.1 outer membrane porin protein 2450915 14482351 APECO78_11880 Escherichia coli APEC O78 outer membrane porin protein YP_007381549.1 2449650 R 1274814 CDS YP_007381550.1 443617694 14482352 complement(2450954..2451469) 1 NC_020163.1 COG2211 Na+/melibiose symporter and related transporters; glucuronide transporter 2451469 14482352 APECO78_11885 Escherichia coli APEC O78 glucuronide transporter YP_007381550.1 2450954 R 1274814 CDS YP_007381551.1 443617695 14482353 complement(2451433..2452326) 1 NC_020163.1 COG2211 Na+/melibiose symporter and related transporters; glucuronide transporter 2452326 14482353 APECO78_11890 Escherichia coli APEC O78 glucuronide transporter YP_007381551.1 2451433 R 1274814 CDS YP_007381552.1 443617696 14482354 complement(2452323..2454134) 1 NC_020163.1 COG3250 Beta-galactosidase/beta-glucuronidase; beta-D-glucuronidase 2454134 14482354 APECO78_11895 Escherichia coli APEC O78 beta-D-glucuronidase YP_007381552.1 2452323 R 1274814 CDS YP_007381553.1 443617697 14482355 complement(2454523..2455113) 1 NC_020163.1 COG1309 Transcriptional regulator; repressor for uid operon 2455113 14482355 APECO78_11900 Escherichia coli APEC O78 repressor for uid operon YP_007381553.1 2454523 R 1274814 CDS YP_007381554.1 443617698 14482356 complement(2455342..2456109) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 7-alpha-hydroxysteroid dehydrogenase 2456109 14482356 APECO78_11905 Escherichia coli APEC O78 7-alpha-hydroxysteroid dehydrogenase YP_007381554.1 2455342 R 1274814 CDS YP_007381555.1 443617699 14482357 complement(2456221..2457249) 1 NC_020163.1 COG1609 Transcriptional regulators; DNA-binding transcriptional repressor MalI 2457249 14482357 APECO78_11910 Escherichia coli APEC O78 DNA-binding transcriptional repressor MalI YP_007381555.1 2456221 R 1274814 CDS YP_007381556.1 443617700 14482358 2457424..2459016 1 NC_020163.1 COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; bifunctional PTS system maltose and glucose-specific transporter subunits IICB 2459016 14482358 APECO78_11915 Escherichia coli APEC O78 bifunctional PTS system maltose and glucose-specific transporter subunits IICB YP_007381556.1 2457424 D 1274814 CDS YP_007381557.1 443617701 14482359 2459026..2460198 1 NC_020163.1 COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; bifunctional beta-cystathionase/maltose regulon regulatory protein 2460198 14482359 APECO78_11920 Escherichia coli APEC O78 bifunctional beta-cystathionase/maltose regulon regulatory protein YP_007381557.1 2459026 D 1274814 CDS YP_007381558.1 443617702 14482360 2460302..2461303 1 NC_020163.1 COG1816 Adenosine deaminase; adenosine deaminase 2461303 14482360 APECO78_11925 Escherichia coli APEC O78 adenosine deaminase YP_007381558.1 2460302 D 1274814 CDS YP_007381559.1 443617703 14482361 complement(2461338..2462378) 1 NC_020163.1 COG0673 Predicted dehydrogenases and related proteins; hypothetical protein 2462378 14482361 APECO78_11930 Escherichia coli APEC O78 hypothetical protein YP_007381559.1 2461338 R 1274814 CDS YP_007381560.1 443617704 14482362 2462621..2462746 1 NC_020163.1 hypothetical protein 2462746 14482362 APECO78_11935 Escherichia coli APEC O78 hypothetical protein YP_007381560.1 2462621 D 1274814 CDS YP_007381561.1 443617705 14482363 2463019..2463234 1 NC_020163.1 oriC-binding nucleoid-associated protein 2463234 14482363 APECO78_11940 Escherichia coli APEC O78 oriC-binding nucleoid-associated protein YP_007381561.1 2463019 D 1274814 CDS YP_007381562.1 443617706 14482364 2463320..2463760 1 NC_020163.1 hypothetical protein 2463760 14482364 APECO78_11945 Escherichia coli APEC O78 hypothetical protein YP_007381562.1 2463320 D 1274814 CDS YP_007381563.1 443617707 14482365 2463837..2464418 1 NC_020163.1 COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA; electron transport complex protein RsxA 2464418 14482365 APECO78_11950 Escherichia coli APEC O78 electron transport complex protein RsxA YP_007381563.1 2463837 D 1274814 CDS YP_007381564.1 443617708 14482366 2464418..2464996 1 NC_020163.1 COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB; electron transport complex protein RnfB 2464996 14482366 APECO78_11955 Escherichia coli APEC O78 electron transport complex protein RnfB YP_007381564.1 2464418 D 1274814 CDS YP_007381565.1 443617709 14482367 2464989..2467115 1 NC_020163.1 COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC; electron transport complex protein RnfC 2467115 14482367 APECO78_11960 Escherichia coli APEC O78 electron transport complex protein RnfC YP_007381565.1 2464989 D 1274814 CDS YP_007381566.1 443617710 14482368 2467116..2468174 1 NC_020163.1 COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD; electron transport complex protein RnfD 2468174 14482368 APECO78_11965 Escherichia coli APEC O78 electron transport complex protein RnfD YP_007381566.1 2467116 D 1274814 CDS YP_007381567.1 443617711 14482369 2468178..2468798 1 NC_020163.1 COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG; electron transport complex protein RnfG 2468798 14482369 APECO78_11970 Escherichia coli APEC O78 electron transport complex protein RnfG YP_007381567.1 2468178 D 1274814 CDS YP_007381568.1 443617712 14482370 2468802..2469497 1 NC_020163.1 COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE; electron transport complex protein RsxE 2469497 14482370 APECO78_11975 Escherichia coli APEC O78 electron transport complex protein RsxE YP_007381568.1 2468802 D 1274814 CDS YP_007381569.1 443617713 14482371 2469497..2470132 1 NC_020163.1 COG0177 Predicted EndoIII-related endonuclease; endonuclease III 2470132 14482371 APECO78_11980 Escherichia coli APEC O78 endonuclease III YP_007381569.1 2469497 D 1274814 CDS YP_007381570.1 443617714 14482372 2470260..2470460 1 NC_020163.1 hypothetical protein 2470460 14482372 APECO78_11985 Escherichia coli APEC O78 hypothetical protein YP_007381570.1 2470260 D 1274814 CDS YP_007381571.1 443617715 14482373 2470743..2472245 1 NC_020163.1 COG3104 Dipeptide/tripeptide permease; inner membrane transporter YhiP 2472245 14482373 APECO78_11990 Escherichia coli APEC O78 inner membrane transporter YhiP YP_007381571.1 2470743 D 1274814 CDS YP_007381572.1 443617716 14482374 2472350..2472955 1 NC_020163.1 COG0625 Glutathione S-transferase; glutathionine S-transferase 2472955 14482374 APECO78_11995 Escherichia coli APEC O78 glutathionine S-transferase YP_007381572.1 2472350 D 1274814 CDS YP_007381573.1 443617717 14482375 complement(2472999..2473859) 1 NC_020163.1 COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxamine kinase 2473859 14482375 APECO78_12000 Escherichia coli APEC O78 pyridoxamine kinase YP_007381573.1 2472999 R 1274814 CDS YP_007381574.1 443617718 14482376 complement(2473921..2475195) 1 NC_020163.1 COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA ligase 2475195 14482376 APECO78_12005 Escherichia coli APEC O78 tyrosyl-tRNA ligase YP_007381574.1 2473921 R 1274814 CDS YP_007381575.1 443617719 14482377 complement(2475324..2475980) 1 NC_020163.1 COG0259 Pyridoxamine-phosphate oxidase; pyridoxine 5'-phosphate oxidase 2475980 14482377 APECO78_12010 Escherichia coli APEC O78 pyridoxine 5'-phosphate oxidase YP_007381575.1 2475324 R 1274814 CDS YP_007381576.1 443617720 14482378 complement(2476039..2476368) 1 NC_020163.1 COG3895 Predicted periplasmic protein; lysozyme inhibitor 2476368 14482378 APECO78_12015 Escherichia coli APEC O78 lysozyme inhibitor YP_007381576.1 2476039 R 1274814 CDS YP_007381577.1 443617721 14482379 complement(2476466..2477575) 1 NC_020163.1 COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases; anhydro-N-acetylmuramic acid kinase 2477575 14482379 APECO78_12020 Escherichia coli APEC O78 anhydro-N-acetylmuramic acid kinase YP_007381577.1 2476466 R 1274814 CDS YP_007381578.1 443617722 14482380 2477849..2478316 1 NC_020163.1 COG3133 Outer membrane lipoprotein; outer membrane lipoprotein SlyB 2478316 14482380 APECO78_12025 Escherichia coli APEC O78 outer membrane lipoprotein SlyB YP_007381578.1 2477849 D 1274814 CDS YP_007381579.1 443617723 14482381 complement(2478363..2478797) 1 NC_020163.1 COG1846 Transcriptional regulators; transcriptional regulator SlyA 2478797 14482381 APECO78_12030 Escherichia coli APEC O78 transcriptional regulator SlyA YP_007381579.1 2478363 R 1274814 CDS YP_007381580.1 443617724 14482382 2478998..2479234 1 NC_020163.1 hypothetical protein 2479234 14482382 APECO78_12035 Escherichia coli APEC O78 hypothetical protein YP_007381580.1 2478998 D 1274814 CDS YP_007381581.1 443617725 14482383 2479237..2480094 1 NC_020163.1 COG1566 Multidrug resistance efflux pump; undecaprenyl pyrophosphate phosphatase 2480094 14482383 APECO78_12040 Escherichia coli APEC O78 undecaprenyl pyrophosphate phosphatase YP_007381581.1 2479237 D 1274814 CDS YP_007381582.1 443617726 14482384 2480094..2482058 1 NC_020163.1 COG1289 Predicted membrane protein; inner membrane protein 2482058 14482384 APECO78_12045 Escherichia coli APEC O78 inner membrane protein YP_007381582.1 2480094 D 1274814 CDS YP_007381583.1 443617727 14482385 complement(2482093..2482614) 1 NC_020163.1 COG2032 Cu/Zn superoxide dismutase; superoxide dismutase 2482614 14482385 APECO78_12050 Escherichia coli APEC O78 superoxide dismutase YP_007381583.1 2482093 R 1274814 CDS YP_007381584.1 443617728 14482386 complement(2482695..2483591) 1 NC_020163.1 COG4989 Predicted oxidoreductase; oxidoreductase ydhF 2483591 14482386 APECO78_12055 Escherichia coli APEC O78 oxidoreductase ydhF YP_007381584.1 2482695 R 1274814 CDS YP_007381585.1 443617729 14482387 complement(2483640..2483879) 1 NC_020163.1 COG3313 Predicted Fe-S protein; hypothetical protein 2483879 14482387 APECO78_12060 Escherichia coli APEC O78 hypothetical protein YP_007381585.1 2483640 R 1274814 CDS YP_007381586.1 443617730 14482388 2483982..2484581 1 NC_020163.1 COG1309 Transcriptional regulator; transcriptional repressor NemR 2484581 14482388 APECO78_12065 Escherichia coli APEC O78 transcriptional repressor NemR YP_007381586.1 2483982 D 1274814 CDS YP_007381587.1 443617731 14482389 2484618..2485715 1 NC_020163.1 COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; N-ethylmaleimide reductase 2485715 14482389 APECO78_12070 Escherichia coli APEC O78 N-ethylmaleimide reductase YP_007381587.1 2484618 D 1274814 CDS YP_007381588.1 443617732 14482390 2485796..2486203 1 NC_020163.1 COG0346 Lactoylglutathione lyase and related lyases; glyoxalase I 2486203 14482390 APECO78_12075 Escherichia coli APEC O78 glyoxalase I YP_007381588.1 2485796 D 1274814 CDS YP_007381589.1 443617733 14482391 2486306..2486953 1 NC_020163.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; ribonuclease T 2486953 14482391 APECO78_12080 Escherichia coli APEC O78 ribonuclease T YP_007381589.1 2486306 D 1274814 CDS YP_007381590.1 443617734 14482392 2487046..2491662 1 NC_020163.1 COG1201 Lhr-like helicases; ATP-dependent helicase 2491662 14482392 APECO78_12085 Escherichia coli APEC O78 ATP-dependent helicase YP_007381590.1 2487046 D 1274814 CDS YP_007381591.1 443617735 14482393 complement(2491713..2492060) 1 NC_020163.1 COG0278 Glutaredoxin-related protein; glutaredoxin-4 2492060 14482393 APECO78_12090 Escherichia coli APEC O78 glutaredoxin-4 YP_007381591.1 2491713 R 1274814 CDS YP_007381592.1 443617736 14482394 2492394..2493209 1 NC_020163.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); lipoprotein 2493209 14482394 APECO78_12095 Escherichia coli APEC O78 lipoprotein YP_007381592.1 2492394 D 1274814 CDS YP_007381593.1 443617737 14482395 2493337..2493918 1 NC_020163.1 COG0605 Superoxide dismutase; superoxide dismutase 2493918 14482395 APECO78_12100 Escherichia coli APEC O78 superoxide dismutase YP_007381593.1 2493337 D 1274814 CDS YP_007381594.1 443617738 14482396 complement(2494064..2495233) 1 NC_020163.1 COG2814 Arabinose efflux permease; transporter 2495233 14482396 APECO78_12105 Escherichia coli APEC O78 transporter YP_007381594.1 2494064 R 1274814 CDS YP_007381595.1 443617739 14482397 complement(2495399..2495488) 1 NC_020163.1 transporter 2495488 14482397 APECO78_12110 Escherichia coli APEC O78 transporter YP_007381595.1 2495399 R 1274814 CDS YP_007381596.1 443617740 14482398 2495787..2496812 1 NC_020163.1 COG1609 Transcriptional regulators; DNA-binding transcriptional repressor PurR 2496812 14482398 APECO78_12115 Escherichia coli APEC O78 DNA-binding transcriptional repressor PurR YP_007381596.1 2495787 D 1274814 CDS YP_007381597.1 443617741 14482399 complement(2496809..2497741) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 2497741 14482399 APECO78_12120 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007381597.1 2496809 R 1274814 CDS YP_007381598.1 443617742 14482400 2497854..2499065 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 2499065 14482400 APECO78_12125 Escherichia coli APEC O78 transporter YP_007381598.1 2497854 D 1274814 CDS YP_007381599.1 443617743 14482401 2499356..2500504 1 NC_020163.1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane fatty acyl phospholipid synthase 2500504 14482401 APECO78_12130 Escherichia coli APEC O78 cyclopropane fatty acyl phospholipid synthase YP_007381599.1 2499356 D 1274814 CDS YP_007381600.1 443617744 14482402 complement(2500544..2501185) 1 NC_020163.1 COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha 2501185 14482402 APECO78_12135 Escherichia coli APEC O78 riboflavin synthase subunit alpha YP_007381600.1 2500544 R 1274814 CDS YP_007381601.1 443617745 14482403 2501400..2502773 1 NC_020163.1 COG0534 Na+-driven multidrug efflux pump; multidrug efflux protein 2502773 14482403 APECO78_12140 Escherichia coli APEC O78 multidrug efflux protein YP_007381601.1 2501400 D 1274814 CDS YP_007381602.1 443617746 14482404 complement(2502814..2504070) 1 NC_020163.1 hypothetical protein 2504070 14482404 APECO78_12145 Escherichia coli APEC O78 hypothetical protein YP_007381602.1 2502814 R 1274814 CDS YP_007381603.1 443617747 14484620 2504643..2504948 1 NC_020163.1 COG0113 Delta-aminolevulinic acid dehydratase; monooxygenase 2504948 14484620 APECO78_12150 Escherichia coli APEC O78 monooxygenase YP_007381603.1 2504643 D 1274814 CDS YP_007381604.1 443617748 14482406 2505074..2506678 1 NC_020163.1 COG4529 Uncharacterized protein conserved in bacteria; hypothetical protein 2506678 14482406 APECO78_12155 Escherichia coli APEC O78 hypothetical protein YP_007381604.1 2505074 D 1274814 CDS YP_007381605.1 443617749 14482407 complement(2506690..2507502) 1 NC_020163.1 hypothetical protein 2507502 14482407 APECO78_12160 Escherichia coli APEC O78 hypothetical protein YP_007381605.1 2506690 R 1274814 CDS YP_007381606.1 443617750 14482408 complement(2507506..2508291) 1 NC_020163.1 thiosulfate reductase cytochrome B subunit 2508291 14482408 APECO78_12165 Escherichia coli APEC O78 thiosulfate reductase cytochrome B subunit YP_007381606.1 2507506 R 1274814 CDS YP_007381607.1 443617751 14482409 complement(2508288..2509007) 1 NC_020163.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; 4Fe-4S ferredoxin-type protein 2509007 14482409 APECO78_12170 Escherichia coli APEC O78 4Fe-4S ferredoxin-type protein YP_007381607.1 2508288 R 1274814 CDS YP_007381608.1 443617752 14482410 complement(2509020..2509664) 1 NC_020163.1 hypothetical protein 2509664 14482410 APECO78_12175 Escherichia coli APEC O78 hypothetical protein YP_007381608.1 2509020 R 1274814 CDS YP_007381609.1 443617753 14482411 complement(2509668..2511770) 1 NC_020163.1 COG2414 Aldehyde:ferredoxin oxidoreductase; oxidoreductase 2511770 14482411 APECO78_12180 Escherichia coli APEC O78 oxidoreductase YP_007381609.1 2509668 R 1274814 CDS YP_007381610.1 443617754 14482412 complement(2511791..2512417) 1 NC_020163.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; hypothetical protein 2512417 14482412 APECO78_12185 Escherichia coli APEC O78 hypothetical protein YP_007381610.1 2511791 R 1274814 CDS YP_007381611.1 443617755 14482413 complement(2512873..2513082) 1 NC_020163.1 hypothetical protein 2513082 14482413 APECO78_12190 Escherichia coli APEC O78 hypothetical protein YP_007381611.1 2512873 R 1274814 CDS YP_007381612.1 443617756 14482414 2513638..2515050 1 NC_020163.1 COG0469 Pyruvate kinase; Pyruvate kinase I 2515050 14482414 APECO78_12195 Escherichia coli APEC O78 Pyruvate kinase I YP_007381612.1 2513638 D 1274814 CDS YP_007381613.1 443617757 14482415 2515361..2515597 1 NC_020163.1 COG4238 Murein lipoprotein; murein lipoprotein 2515597 14482415 APECO78_12200 Escherichia coli APEC O78 murein lipoprotein YP_007381613.1 2515361 D 1274814 CDS YP_007381614.1 443617758 14482416 complement(2515661..2516665) 1 NC_020163.1 COG1376 Uncharacterized protein conserved in bacteria; murein L,D-transpeptidase 2516665 14482416 APECO78_12205 Escherichia coli APEC O78 murein L,D-transpeptidase YP_007381614.1 2515661 R 1274814 CDS YP_007381615.1 443617759 14482417 complement(2516814..2517230) 1 NC_020163.1 COG2166 SufE protein probably involved in Fe-S center assembly; cysteine desufuration protein SufE 2517230 14482417 APECO78_12210 Escherichia coli APEC O78 cysteine desufuration protein SufE YP_007381615.1 2516814 R 1274814 CDS YP_007381616.1 443617760 14482418 complement(2517243..2518463) 1 NC_020163.1 COG0520 Selenocysteine lyase; bifunctional cysteine desulfurase/selenocysteine lyase 2518463 14482418 APECO78_12215 Escherichia coli APEC O78 bifunctional cysteine desulfurase/selenocysteine lyase YP_007381616.1 2517243 R 1274814 CDS YP_007381617.1 443617761 14482419 complement(2518460..2519179) 1 NC_020163.1 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufD 2519179 14482419 APECO78_12220 Escherichia coli APEC O78 cysteine desulfurase activator complex subunit SufD YP_007381617.1 2518460 R 1274814 CDS YP_007381618.1 443617762 14482420 complement(2519216..2519731) 1 NC_020163.1 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; component of SufBCD complex 2519731 14482420 APECO78_12225 Escherichia coli APEC O78 component of SufBCD complex YP_007381618.1 2519216 R 1274814 CDS YP_007381619.1 443617763 14482421 complement(2519706..2520452) 1 NC_020163.1 COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; cysteine desulfurase ATPase component 2520452 sufC 14482421 sufC Escherichia coli APEC O78 cysteine desulfurase ATPase component YP_007381619.1 2519706 R 1274814 CDS YP_007381620.1 443617764 14482422 complement(2520462..2521949) 1 NC_020163.1 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component; cysteine desulfurase activator complex subunit SufB 2521949 14482422 APECO78_12235 Escherichia coli APEC O78 cysteine desulfurase activator complex subunit SufB YP_007381620.1 2520462 R 1274814 CDS YP_007381621.1 443617765 14482423 complement(2521958..2522326) 1 NC_020163.1 COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly scaffold protein 2522326 sufA 14482423 sufA Escherichia coli APEC O78 iron-sulfur cluster assembly scaffold protein YP_007381621.1 2521958 R 1274814 CDS YP_007381622.1 443617766 14482424 complement(2522875..2523144) 1 NC_020163.1 hypothetical protein 2523144 14482424 APECO78_12245 Escherichia coli APEC O78 hypothetical protein YP_007381622.1 2522875 R 1274814 CDS YP_007381623.1 443617767 14482425 complement(2523163..2523573) 1 NC_020163.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; acyl-CoA esterase 2523573 14482425 APECO78_12250 Escherichia coli APEC O78 acyl-CoA esterase YP_007381623.1 2523163 R 1274814 CDS YP_007381624.1 443617768 14482426 complement(2523570..2526626) 1 NC_020163.1 COG0277 FAD/FMN-containing dehydrogenases; FAD-linked oxidoreductase 2526626 14482426 APECO78_12255 Escherichia coli APEC O78 FAD-linked oxidoreductase YP_007381624.1 2523570 R 1274814 CDS YP_007381625.1 443617769 14482427 2527015..2528127 1 NC_020163.1 COG0628 Predicted permease; inner membrane protein 2528127 14482427 APECO78_12260 Escherichia coli APEC O78 inner membrane protein YP_007381625.1 2527015 D 1274814 CDS YP_007381626.1 443617770 14482428 2528556..2528912 1 NC_020163.1 hypothetical protein 2528912 14482428 APECO78_12265 Escherichia coli APEC O78 hypothetical protein YP_007381626.1 2528556 D 1274814 CDS YP_007381627.1 443617771 14482429 2529012..2530226 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative transporter; MFS superfamily protein 2530226 14482429 APECO78_12270 Escherichia coli APEC O78 putative transporter; MFS superfamily protein YP_007381627.1 2529012 D 1274814 CDS YP_007381628.1 443617772 14482430 2530453..2531718 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter, major facilitator family protein 2531718 14482430 APECO78_12275 Escherichia coli APEC O78 transporter, major facilitator family protein YP_007381628.1 2530453 D 1274814 CDS YP_007381629.1 443617773 14482431 2531730..2532596 1 NC_020163.1 COG0169 Shikimate 5-dehydrogenase; putative oxidoreductase 2532596 14482431 APECO78_12280 Escherichia coli APEC O78 putative oxidoreductase YP_007381629.1 2531730 D 1274814 CDS YP_007381630.1 443617774 14482432 2532627..2533385 1 NC_020163.1 COG0710 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase 2533385 aroD 14482432 aroD Escherichia coli APEC O78 3-dehydroquinate dehydratase YP_007381630.1 2532627 D 1274814 CDS YP_007381631.1 443617775 14482433 2533530..2535125 1 NC_020163.1 COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase; acetyl-CoA: acetoacetyl-CoA transferase subunit alpha/beta 2535125 14482433 APECO78_12290 Escherichia coli APEC O78 acetyl-CoA: acetoacetyl-CoA transferase subunit alpha/beta YP_007381631.1 2533530 D 1274814 CDS YP_007381632.1 443617776 14482434 2535139..2536290 1 NC_020163.1 COG1960 Acyl-CoA dehydrogenases; acyl-CoA dehydrogenase 2536290 14482434 APECO78_12295 Escherichia coli APEC O78 acyl-CoA dehydrogenase YP_007381632.1 2535139 D 1274814 CDS YP_007381633.1 443617777 14482435 complement(2536333..2537244) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; HTH-type transcriptional regulator ydiP 2537244 14482435 APECO78_12300 Escherichia coli APEC O78 HTH-type transcriptional regulator ydiP YP_007381633.1 2536333 R 1274814 CDS YP_007381634.1 443617778 14482436 complement(2537347..2537523) 1 NC_020163.1 hypothetical protein 2537523 14482436 APECO78_12305 Escherichia coli APEC O78 hypothetical protein YP_007381634.1 2537347 R 1274814 CDS YP_007381635.1 443617779 14482437 2537560..2538324 1 NC_020163.1 COG2086 Electron transfer flavoprotein, beta subunit; hypothetical protein 2538324 14482437 APECO78_12310 Escherichia coli APEC O78 hypothetical protein YP_007381635.1 2537560 D 1274814 CDS YP_007381636.1 443617780 14482438 2538344..2539282 1 NC_020163.1 COG2025 Electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit YdiR 2539282 14482438 APECO78_12315 Escherichia coli APEC O78 electron transfer flavoprotein subunit YdiR YP_007381636.1 2538344 D 1274814 CDS YP_007381637.1 443617781 14482439 2539338..2540627 1 NC_020163.1 COG0644 Dehydrogenases (flavoproteins); oxidoreductase 2540627 14482439 APECO78_12320 Escherichia coli APEC O78 oxidoreductase YP_007381637.1 2539338 D 1274814 CDS YP_007381638.1 443617782 14482440 2540624..2540917 1 NC_020163.1 COG2440 Ferredoxin-like protein; 4Fe-4S ferredoxin 2540917 14482440 APECO78_12325 Escherichia coli APEC O78 4Fe-4S ferredoxin YP_007381638.1 2540624 D 1274814 CDS YP_007381639.1 443617783 14482441 2540920..2542620 1 NC_020163.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; short chain acyl-CoA synthetase 2542620 14482441 APECO78_12330 Escherichia coli APEC O78 short chain acyl-CoA synthetase YP_007381639.1 2540920 D 1274814 CDS YP_007381640.1 443617784 14482442 complement(2542677..2545055) 1 NC_020163.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase 2545055 14482442 APECO78_12335 Escherichia coli APEC O78 phosphoenolpyruvate synthase YP_007381640.1 2542677 R 1274814 CDS YP_007381641.1 443617785 14482443 2545388..2546221 1 NC_020163.1 COG1806 Uncharacterized protein conserved in bacteria; PEP synthetase regulatory protein 2546221 14482443 APECO78_12340 Escherichia coli APEC O78 PEP synthetase regulatory protein YP_007381641.1 2545388 D 1274814 CDS YP_007381642.1 443617786 14482444 2546378..2547424 1 NC_020163.1 COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 2547424 14482444 APECO78_12345 Escherichia coli APEC O78 phospho-2-dehydro-3-deoxyheptonate aldolase YP_007381642.1 2546378 D 1274814 CDS YP_007381643.1 443617787 14482445 2547556..2547747 1 NC_020163.1 COG4256 Hemin uptake protein; hypothetical protein 2547747 14482445 APECO78_12350 Escherichia coli APEC O78 hypothetical protein YP_007381643.1 2547556 D 1274814 CDS YP_007381644.1 443617788 14482446 complement(2547751..2549187) 1 NC_020163.1 COG0397 Uncharacterized conserved protein; hypothetical protein 2549187 14482446 APECO78_12355 Escherichia coli APEC O78 hypothetical protein YP_007381644.1 2547751 R 1274814 CDS YP_007381645.1 443617789 14482447 complement(2549250..2549963) 1 NC_020163.1 COG2200 FOG: EAL domain; hypothetical protein 2549963 14482447 APECO78_12360 Escherichia coli APEC O78 hypothetical protein YP_007381645.1 2549250 R 1274814 CDS YP_007381646.1 443617790 14482448 complement(2550210..2550674) 1 NC_020163.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); lipoprotein 2550674 14482448 APECO78_12365 Escherichia coli APEC O78 lipoprotein YP_007381646.1 2550210 R 1274814 CDS YP_007381647.1 443617791 14482449 complement(2550752..2551501) 1 NC_020163.1 COG4138 ABC-type cobalamin transport system, ATPase component; vitamin B12-transporter ATPase 2551501 14482449 APECO78_12370 Escherichia coli APEC O78 vitamin B12-transporter ATPase YP_007381647.1 2550752 R 1274814 CDS YP_007381648.1 443617792 14482450 complement(2551501..2552052) 1 NC_020163.1 COG0386 Glutathione peroxidase; glutathione peroxidase 2552052 btuE 14482450 btuE Escherichia coli APEC O78 glutathione peroxidase YP_007381648.1 2551501 R 1274814 CDS YP_007381649.1 443617793 14482451 complement(2552115..2553095) 1 NC_020163.1 COG4139 ABC-type cobalamin transport system, permease component; vtamin B12-transporter permease 2553095 14482451 APECO78_12380 Escherichia coli APEC O78 vtamin B12-transporter permease YP_007381649.1 2552115 R 1274814 CDS YP_007381650.1 443617794 14482452 complement(2553196..2553495) 1 NC_020163.1 COG0776 Bacterial nucleoid DNA-binding protein; integration host factor subunit alpha 2553495 14482452 APECO78_12385 Escherichia coli APEC O78 integration host factor subunit alpha YP_007381650.1 2553196 R 1274814 CDS YP_007381651.1 443617795 14482453 complement(2553500..2555887) 1 NC_020163.1 COG0073 EMAP domain; phenylalanyl-tRNA ligase subunit beta 2555887 pheT 14482453 pheT Escherichia coli APEC O78 phenylalanyl-tRNA ligase subunit beta YP_007381651.1 2553500 R 1274814 CDS YP_007381652.1 443617796 14482454 complement(2555902..2556885) 1 NC_020163.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 2556885 14482454 APECO78_12395 Escherichia coli APEC O78 phenylalanyl-tRNA synthetase subunit alpha YP_007381652.1 2555902 R 1274814 CDS YP_007381653.1 443617797 14482455 complement(2556999..2557094) 1 NC_020163.1 hypothetical protein 2557094 14482455 APECO78_12400 Escherichia coli APEC O78 hypothetical protein YP_007381653.1 2556999 R 1274814 CDS YP_007381654.1 443617798 14482456 complement(2557336..2557692) 1 NC_020163.1 COG0292 Ribosomal protein L20; 50S ribosomal protein L20 2557692 14482456 APECO78_12405 Escherichia coli APEC O78 50S ribosomal protein L20 YP_007381654.1 2557336 R 1274814 CDS YP_007381655.1 443617799 14482457 complement(2557745..2557942) 1 NC_020163.1 COG0291 Ribosomal protein L35; 50S ribosomal protein L35 2557942 rpmI 14482457 rpmI Escherichia coli APEC O78 50S ribosomal protein L35 YP_007381655.1 2557745 R 1274814 CDS YP_007381656.1 443617800 14482458 complement(2558039..2558473) 1 NC_020163.1 COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 2558473 14482458 APECO78_12415 Escherichia coli APEC O78 translation initiation factor IF-3 YP_007381656.1 2558039 R 1274814 CDS YP_007381657.1 443617801 14482459 complement(2558585..2560513) 1 NC_020163.1 COG0441 Threonyl-tRNA synthetase; threonyl-tRNA ligase 2560513 thrS 14482459 thrS Escherichia coli APEC O78 threonyl-tRNA ligase YP_007381657.1 2558585 R 1274814 CDS YP_007381658.1 443617802 14482460 2561037..2562671 1 NC_020163.1 Ankyrin repeat protein B 2562671 14482460 APECO78_12425 Escherichia coli APEC O78 Ankyrin repeat protein B YP_007381658.1 2561037 D 1274814 CDS YP_007381659.1 443617803 14482461 2562658..2562906 1 NC_020163.1 hypothetical protein 2562906 14482461 APECO78_12430 Escherichia coli APEC O78 hypothetical protein YP_007381659.1 2562658 D 1274814 CDS YP_007381660.1 443617804 14482462 2563082..2563189 1 NC_020163.1 hypothetical protein 2563189 14482462 APECO78_12435 Escherichia coli APEC O78 hypothetical protein YP_007381660.1 2563082 D 1274814 CDS YP_007381661.1 443617805 14482463 complement(2563242..2564000) 1 NC_020163.1 COG3137 Putative salt-induced outer membrane protein; hypothetical protein 2564000 14482463 APECO78_12440 Escherichia coli APEC O78 hypothetical protein YP_007381661.1 2563242 R 1274814 CDS YP_007381662.1 443617806 14482464 2564287..2565216 1 NC_020163.1 COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 6-phosphofructokinase 2 2565216 14482464 APECO78_12445 Escherichia coli APEC O78 6-phosphofructokinase 2 YP_007381662.1 2564287 D 1274814 CDS YP_007381663.1 443617807 14482465 2565317..2565607 1 NC_020163.1 hypothetical protein 2565607 14482465 APECO78_12450 Escherichia coli APEC O78 hypothetical protein YP_007381663.1 2565317 D 1274814 CDS YP_007381664.1 443617808 14482466 2565713..2566573 1 NC_020163.1 COG3001 Fructosamine-3-kinase; fructosamine kinase 2566573 14482466 APECO78_12455 Escherichia coli APEC O78 fructosamine kinase YP_007381664.1 2565713 D 1274814 CDS YP_007381665.1 443617809 14482467 complement(2566614..2567150) 1 NC_020163.1 inner membrane protein 2567150 14482467 APECO78_12460 Escherichia coli APEC O78 inner membrane protein YP_007381665.1 2566614 R 1274814 CDS YP_007381666.1 443617810 14482468 2567297..2567965 1 NC_020163.1 COG0637 Predicted phosphatase/phosphohexomutase; 2-deoxyglucose-6-phosphatase 2567965 14482468 APECO78_12465 Escherichia coli APEC O78 2-deoxyglucose-6-phosphatase YP_007381666.1 2567297 D 1274814 CDS YP_007381667.1 443617811 14482469 2568128..2568718 1 NC_020163.1 COG1988 Predicted membrane-bound metal-dependent hydrolases; hypothetical protein 2568718 14482469 APECO78_12470 Escherichia coli APEC O78 hypothetical protein YP_007381667.1 2568128 D 1274814 CDS YP_007381668.1 443617812 14482470 2568851..2570242 1 NC_020163.1 COG1823 Predicted Na+/dicarboxylate symporter; cation-acid symporter 2570242 14482470 APECO78_12475 Escherichia coli APEC O78 cation-acid symporter YP_007381668.1 2568851 D 1274814 CDS YP_007381669.1 443617813 14482471 complement(2570246..2571061) 1 NC_020163.1 hypothetical protein 2571061 14482471 APECO78_12480 Escherichia coli APEC O78 hypothetical protein YP_007381669.1 2570246 R 1274814 CDS YP_007381670.1 443617814 14482472 complement(2571338..2571580) 1 NC_020163.1 cell division modulator 2571580 14482472 APECO78_12485 Escherichia coli APEC O78 cell division modulator YP_007381670.1 2571338 R 1274814 CDS YP_007381671.1 443617815 14482473 2571784..2574045 1 NC_020163.1 COG0753 Catalase; hydroperoxidase II 2574045 katE 14482473 katE Escherichia coli APEC O78 hydroperoxidase II YP_007381671.1 2571784 D 1274814 CDS YP_007381672.1 443617816 14482474 complement(2574092..2574850) 1 NC_020163.1 COG3394 Uncharacterized protein conserved in bacteria; hypothetical protein 2574850 14482474 APECO78_12495 Escherichia coli APEC O78 hypothetical protein YP_007381672.1 2574092 R 1274814 CDS YP_007381673.1 443617817 14482475 complement(2574863..2576215) 1 NC_020163.1 COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; diacetylchitobiose-6-phosphate hydrolase 2576215 14482475 APECO78_12500 Escherichia coli APEC O78 diacetylchitobiose-6-phosphate hydrolase YP_007381673.1 2574863 R 1274814 CDS YP_007381674.1 443617818 14482476 complement(2576319..2577083) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator ChbR 2577083 14482476 APECO78_12505 Escherichia coli APEC O78 DNA-binding transcriptional regulator ChbR YP_007381674.1 2576319 R 1274814 CDS YP_007381675.1 443617819 14482477 complement(2577168..2577518) 1 NC_020163.1 COG1447 Phosphotransferase system cellobiose-specific component IIA; N,N-diacetylchitobiose-specific phosphotransferase enzyme IIA component 2577518 14482477 APECO78_12510 Escherichia coli APEC O78 N,N-diacetylchitobiose-specific phosphotransferase enzyme IIA component YP_007381675.1 2577168 R 1274814 CDS YP_007381676.1 443617820 14482478 complement(2577569..2578927) 1 NC_020163.1 COG1455 Phosphotransferase system cellobiose-specific component IIC; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 2578927 14482478 APECO78_12515 Escherichia coli APEC O78 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_007381676.1 2577569 R 1274814 CDS YP_007381677.1 443617821 14482479 complement(2579012..2579332) 1 NC_020163.1 COG1440 Phosphotransferase system cellobiose-specific component IIB; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 2579332 14482479 APECO78_12520 Escherichia coli APEC O78 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_007381677.1 2579012 R 1274814 CDS YP_007381678.1 443617822 14482480 complement(2579631..2579969) 1 NC_020163.1 DNA-binding transcriptional activator OsmE 2579969 14482480 APECO78_12525 Escherichia coli APEC O78 DNA-binding transcriptional activator OsmE YP_007381678.1 2579631 R 1274814 CDS YP_007381679.1 443617823 14482481 2580171..2580998 1 NC_020163.1 COG0171 NAD synthase; NAD synthetase 2580998 nadE 14482481 nadE Escherichia coli APEC O78 NAD synthetase YP_007381679.1 2580171 D 1274814 CDS YP_007381680.1 443617824 14482482 2581228..2582115 1 NC_020163.1 COG0322 Nuclease subunit of the excinuclease complex; nucleotide excision repair endonuclease 2582115 14482482 APECO78_12535 Escherichia coli APEC O78 nucleotide excision repair endonuclease YP_007381680.1 2581228 D 1274814 CDS YP_007381681.1 443617825 14482483 complement(2582075..2582650) 1 NC_020163.1 COG3758 Uncharacterized protein conserved in bacteria; hypothetical protein 2582650 14482483 APECO78_12540 Escherichia coli APEC O78 hypothetical protein YP_007381681.1 2582075 R 1274814 CDS YP_007381682.1 443617826 14482484 complement(2582853..2583338) 1 NC_020163.1 COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; periplasmic protein 2583338 14482484 APECO78_12545 Escherichia coli APEC O78 periplasmic protein YP_007381682.1 2582853 R 1274814 CDS YP_007381683.1 443617827 14482485 complement(2583668..2584636) 1 NC_020163.1 COG2988 Succinylglutamate desuccinylase; succinylglutamate desuccinylase 2584636 14482485 APECO78_12550 Escherichia coli APEC O78 succinylglutamate desuccinylase YP_007381683.1 2583668 R 1274814 CDS YP_007381684.1 443617828 14482486 complement(2584629..2585972) 1 NC_020163.1 COG3724 Succinylarginine dihydrolase; succinylarginine dihydrolase 2585972 14482486 APECO78_12555 Escherichia coli APEC O78 succinylarginine dihydrolase YP_007381684.1 2584629 R 1274814 CDS YP_007381685.1 443617829 14482487 complement(2585969..2587447) 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; succinylglutamic semialdehyde dehydrogenase 2587447 astD 14482487 astD Escherichia coli APEC O78 succinylglutamic semialdehyde dehydrogenase YP_007381685.1 2585969 R 1274814 CDS YP_007381686.1 443617830 14482488 complement(2587444..2588478) 1 NC_020163.1 COG3138 Arginine/ornithine N-succinyltransferase beta subunit; arginine succinyltransferase 2588478 14482488 APECO78_12565 Escherichia coli APEC O78 arginine succinyltransferase YP_007381686.1 2587444 R 1274814 CDS YP_007381687.1 443617831 14482489 complement(2588475..2589695) 1 NC_020163.1 COG4992 Ornithine/acetylornithine aminotransferase; bifunctional succinylornithine transaminase/acetylornithine transaminase 2589695 14482489 APECO78_12570 Escherichia coli APEC O78 bifunctional succinylornithine transaminase/acetylornithine transaminase YP_007381687.1 2588475 R 1274814 CDS YP_007381688.1 443617832 14482490 complement(2589955..2590053) 1 NC_020163.1 hypothetical protein 2590053 14482490 APECO78_12575 Escherichia coli APEC O78 hypothetical protein YP_007381688.1 2589955 R 1274814 CDS YP_007381689.1 443617833 14482491 2590141..2590947 1 NC_020163.1 COG0708 Exonuclease III; exonuclease III 2590947 14482491 APECO78_12580 Escherichia coli APEC O78 exonuclease III YP_007381689.1 2590141 D 1274814 CDS YP_007381690.1 443617834 14482492 2591114..2591824 1 NC_020163.1 COG0398 Uncharacterized conserved protein; inner membrane protein 2591824 14482492 APECO78_12585 Escherichia coli APEC O78 inner membrane protein YP_007381690.1 2591114 D 1274814 CDS YP_007381691.1 443617835 14482493 2591829..2592506 1 NC_020163.1 hypothetical protein 2592506 14482493 APECO78_12590 Escherichia coli APEC O78 hypothetical protein YP_007381691.1 2591829 D 1274814 CDS YP_007381692.1 443617836 14482494 2592521..2593228 1 NC_020163.1 COG0398 Uncharacterized conserved protein; inner membrane protein 2593228 14482494 APECO78_12595 Escherichia coli APEC O78 inner membrane protein YP_007381692.1 2592521 D 1274814 CDS YP_007381693.1 443617837 14482495 2593228..2593776 1 NC_020163.1 COG2128 Uncharacterized conserved protein; carboxymuconolactone decarboxylase family protein 2593776 14482495 APECO78_12600 Escherichia coli APEC O78 carboxymuconolactone decarboxylase family protein YP_007381693.1 2593228 D 1274814 CDS YP_007381694.1 443617838 14482496 2593786..2594952 1 NC_020163.1 COG4134 ABC-type uncharacterized transport system, periplasmic component; hypothetical protein 2594952 14482496 APECO78_12605 Escherichia coli APEC O78 hypothetical protein YP_007381694.1 2593786 D 1274814 CDS YP_007381695.1 443617839 14482497 2594925..2596460 1 NC_020163.1 COG4135 ABC-type uncharacterized transport system, permease component; fused transporter subunits of ABC superfamily: membrane component 2596460 14482497 APECO78_12610 Escherichia coli APEC O78 fused transporter subunits of ABC superfamily: membrane component YP_007381695.1 2594925 D 1274814 CDS YP_007381696.1 443617840 14482498 2596460..2597113 1 NC_020163.1 COG4136 ABC-type uncharacterized transport system, ATPase component; ABC transporter ATP-binding protein 2597113 14482498 APECO78_12615 Escherichia coli APEC O78 ABC transporter ATP-binding protein YP_007381696.1 2596460 D 1274814 CDS YP_007381697.1 443617841 14482499 2597180..2598487 1 NC_020163.1 COG2897 Rhodanese-related sulfurtransferase; thiosulfate sulfur transferase 2598487 14482499 APECO78_12620 Escherichia coli APEC O78 thiosulfate sulfur transferase YP_007381697.1 2597180 D 1274814 CDS YP_007381698.1 443617842 14482500 complement(2598496..2599116) 1 NC_020163.1 COG0558 Phosphatidylglycerophosphate synthase; phosphatidyl transferase, inner membrane protein 2599116 14482500 APECO78_12625 Escherichia coli APEC O78 phosphatidyl transferase, inner membrane protein YP_007381698.1 2598496 R 1274814 CDS YP_007381699.1 443617843 14482501 2599203..2599610 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 2599610 14482501 APECO78_12630 Escherichia coli APEC O78 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_007381699.1 2599203 D 1274814 CDS YP_007381700.1 443617844 14482502 complement(2599576..2599848) 1 NC_020163.1 hypothetical protein 2599848 14482502 APECO78_12635 Escherichia coli APEC O78 hypothetical protein YP_007381700.1 2599576 R 1274814 CDS YP_007381701.1 443617845 14482503 2600084..2601427 1 NC_020163.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 2601427 14482503 APECO78_12640 Escherichia coli APEC O78 glutamate dehydrogenase YP_007381701.1 2600084 D 1274814 CDS YP_007381702.1 443617846 14482504 complement(2601544..2602584) 1 NC_020163.1 hypothetical protein 2602584 14482504 APECO78_12645 Escherichia coli APEC O78 hypothetical protein YP_007381702.1 2601544 R 1274814 CDS YP_007381703.1 443617847 14482505 complement(2602712..2604673) 1 NC_020163.1 COG0550 Topoisomerase IA; DNA topoisomerase III 2604673 14482505 APECO78_12650 Escherichia coli APEC O78 DNA topoisomerase III YP_007381703.1 2602712 R 1274814 CDS YP_007381704.1 443617848 14482506 complement(2604678..2605721) 1 NC_020163.1 COG0709 Selenophosphate synthase; selenophosphate synthetase 2605721 14482506 APECO78_12655 Escherichia coli APEC O78 selenophosphate synthetase YP_007381704.1 2604678 R 1274814 CDS YP_007381705.1 443617849 14482507 complement(2605838..2606389) 1 NC_020163.1 COG0778 Nitroreductase; oxidoreductase 2606389 14482507 APECO78_12660 Escherichia coli APEC O78 oxidoreductase YP_007381705.1 2605838 R 1274814 CDS YP_007381706.1 443617850 14482508 2606550..2608406 1 NC_020163.1 COG0616 Periplasmic serine proteases (ClpP class); protease 4 2608406 14482508 APECO78_12665 Escherichia coli APEC O78 protease 4 YP_007381706.1 2606550 D 1274814 CDS YP_007381707.1 443617851 14482509 2608573..2609589 1 NC_020163.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; asparaginase 2609589 14482509 APECO78_12670 Escherichia coli APEC O78 asparaginase YP_007381707.1 2608573 D 1274814 CDS YP_007381708.1 443617852 14482510 2609600..2610241 1 NC_020163.1 COG1335 Amidases related to nicotinamidase; nicotinamidase/pyrazinamidase 2610241 14482510 APECO78_12675 Escherichia coli APEC O78 nicotinamidase/pyrazinamidase YP_007381708.1 2609600 D 1274814 CDS YP_007381709.1 443617853 14482511 complement(2610402..2610674) 1 NC_020163.1 COG3139 Uncharacterized protein conserved in bacteria; hypothetical protein 2610674 14482511 APECO78_12680 Escherichia coli APEC O78 hypothetical protein YP_007381709.1 2610402 R 1274814 CDS YP_007381710.1 443617854 14482512 complement(2610716..2611129) 1 NC_020163.1 COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; methionine sulfoxide reductase B 2611129 14482512 APECO78_12685 Escherichia coli APEC O78 methionine sulfoxide reductase B YP_007381710.1 2610716 R 1274814 CDS YP_007381711.1 443617855 14482513 2611471..2612466 1 NC_020163.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2612466 14482513 APECO78_12690 Escherichia coli APEC O78 glyceraldehyde-3-phosphate dehydrogenase YP_007381711.1 2611471 D 1274814 CDS YP_007381712.1 443617856 14482514 2612550..2613434 1 NC_020163.1 COG0676 Uncharacterized enzymes related to aldose 1-epimerase; aldose 1-epimerase 2613434 14482514 APECO78_12695 Escherichia coli APEC O78 aldose 1-epimerase YP_007381712.1 2612550 D 1274814 CDS YP_007381713.1 443617857 14482515 complement(2613485..2614339) 1 NC_020163.1 COG0656 Aldo/keto reductases, related to diketogulonate reductase; putative oxidoreductase 2614339 14482515 APECO78_12700 Escherichia coli APEC O78 putative oxidoreductase YP_007381713.1 2613485 R 1274814 CDS YP_007381714.1 443617858 14482516 complement(2614429..2615175) 1 NC_020163.1 COG3713 Outer membrane protein V; MltA-interacting protein 2615175 14482516 APECO78_12705 Escherichia coli APEC O78 MltA-interacting protein YP_007381714.1 2614429 R 1274814 CDS YP_007381715.1 443617859 14482517 2615611..2617545 1 NC_020163.1 COG2766 Putative Ser protein kinase; PrkA family serine protein kinase 2617545 14482517 APECO78_12710 Escherichia coli APEC O78 PrkA family serine protein kinase YP_007381715.1 2615611 D 1274814 CDS YP_007381716.1 443617860 14482518 2617658..2618941 1 NC_020163.1 COG2718 Uncharacterized conserved protein; hypothetical protein 2618941 14482518 APECO78_12715 Escherichia coli APEC O78 hypothetical protein YP_007381716.1 2617658 D 1274814 CDS YP_007381717.1 443617861 14482519 2619088..2620563 1 NC_020163.1 COG2199 FOG: GGDEF domain; diguanylate cyclase 2620563 14482519 APECO78_12720 Escherichia coli APEC O78 diguanylate cyclase YP_007381717.1 2619088 D 1274814 CDS YP_007381718.1 443617862 14482520 2620744..2622234 1 NC_020163.1 COG2199 FOG: GGDEF domain; hypothetical protein 2622234 14482520 APECO78_12725 Escherichia coli APEC O78 hypothetical protein YP_007381718.1 2620744 D 1274814 CDS YP_007381719.1 443617863 14482521 2622277..2622780 1 NC_020163.1 COG2606 Uncharacterized conserved protein; hypothetical protein 2622780 14482521 APECO78_12730 Escherichia coli APEC O78 hypothetical protein YP_007381719.1 2622277 D 1274814 CDS YP_007381720.1 443617864 14482522 complement(2622781..2622933) 1 NC_020163.1 hypothetical protein 2622933 14482522 APECO78_12735 Escherichia coli APEC O78 hypothetical protein YP_007381720.1 2622781 R 1274814 CDS YP_007381721.1 443617865 14482523 2623055..2623501 1 NC_020163.1 COG2707 Predicted membrane protein; hypothetical protein 2623501 14482523 APECO78_12740 Escherichia coli APEC O78 hypothetical protein YP_007381721.1 2623055 D 1274814 CDS YP_007381722.1 443617866 14482524 complement(2623458..2624279) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator, ARAC-type 2624279 14482524 APECO78_12745 Escherichia coli APEC O78 DNA-binding transcriptional regulator, ARAC-type YP_007381722.1 2623458 R 1274814 CDS YP_007381723.1 443617867 14482525 2624376..2625557 1 NC_020163.1 COG2807 Cyanate permease; putative amino acid/amine transport protein 2625557 14482525 APECO78_12750 Escherichia coli APEC O78 putative amino acid/amine transport protein YP_007381723.1 2624376 D 1274814 CDS YP_007381724.1 443617868 14482526 2625612..2625959 1 NC_020163.1 COG3189 Uncharacterized conserved protein; hypothetical protein 2625959 14482526 APECO78_12755 Escherichia coli APEC O78 hypothetical protein YP_007381724.1 2625612 D 1274814 CDS YP_007381725.1 443617869 14482527 complement(2625981..2626235) 1 NC_020163.1 COG3042 Putative hemolysin; hemolysin 2626235 14482527 APECO78_12760 Escherichia coli APEC O78 hemolysin YP_007381725.1 2625981 R 1274814 CDS YP_007381726.1 443617870 14482528 2626418..2627443 1 NC_020163.1 COG2199 FOG: GGDEF domain; putative diguanylate cyclase 2627443 14482528 APECO78_12765 Escherichia coli APEC O78 putative diguanylate cyclase YP_007381726.1 2626418 D 1274814 CDS YP_007381727.1 443617871 14482529 2627577..2627651 1 NC_020163.1 hypothetical protein 2627651 14482529 APECO78_12770 Escherichia coli APEC O78 hypothetical protein YP_007381727.1 2627577 D 1274814 CDS YP_007381728.1 443617872 14482530 complement(2627710..2627958) 1 NC_020163.1 COG2261 Predicted membrane protein; hypothetical protein 2627958 14482530 APECO78_12775 Escherichia coli APEC O78 hypothetical protein YP_007381728.1 2627710 R 1274814 CDS YP_007381729.1 443617873 14482531 complement(2628106..2628288) 1 NC_020163.1 hypothetical protein 2628288 14482531 APECO78_12780 Escherichia coli APEC O78 hypothetical protein YP_007381729.1 2628106 R 1274814 CDS YP_007381730.1 443617874 14482532 complement(2628292..2628651) 1 NC_020163.1 COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance; hypothetical protein 2628651 14482532 APECO78_12785 Escherichia coli APEC O78 hypothetical protein YP_007381730.1 2628292 R 1274814 CDS YP_007381731.1 443617875 14482533 complement(2628824..2629462) 1 NC_020163.1 COG1280 Putative threonine efflux protein; leucine export protein LeuE 2629462 14482533 APECO78_12790 Escherichia coli APEC O78 leucine export protein LeuE YP_007381731.1 2628824 R 1274814 CDS YP_007381732.1 443617876 14482534 complement(2629589..2630512) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2630512 14482534 APECO78_12795 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007381732.1 2629589 R 1274814 CDS YP_007381733.1 443617877 14482535 2630615..2631700 1 NC_020163.1 COG0473 Isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2631700 14482535 APECO78_12800 Escherichia coli APEC O78 tartrate dehydrogenase YP_007381733.1 2630615 D 1274814 CDS YP_007381734.1 443617878 14482536 2631951..2633561 1 NC_020163.1 COG1292 Choline-glycine betaine transporter; transporter 2633561 14482536 APECO78_12805 Escherichia coli APEC O78 transporter YP_007381734.1 2631951 D 1274814 CDS YP_007381735.1 443617879 14482537 2633593..2634717 1 NC_020163.1 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit; dioxygenase subunit alpha yeaW 2634717 14482537 APECO78_12810 Escherichia coli APEC O78 dioxygenase subunit alpha yeaW YP_007381735.1 2633593 D 1274814 CDS YP_007381736.1 443617880 14482538 2634773..2635738 1 NC_020163.1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; oxidoreductase 2635738 14482538 APECO78_12815 Escherichia coli APEC O78 oxidoreductase YP_007381736.1 2634773 D 1274814 CDS YP_007381737.1 443617881 14482539 complement(2635792..2636919) 1 NC_020163.1 COG0349 Ribonuclease D; ribonuclease D 2636919 14482539 APECO78_12820 Escherichia coli APEC O78 ribonuclease D YP_007381737.1 2635792 R 1274814 CDS YP_007381738.1 443617882 14482540 complement(2636989..2638674) 1 NC_020163.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; long-chain-fatty-acid--CoA ligase 2638674 14482540 APECO78_12825 Escherichia coli APEC O78 long-chain-fatty-acid--CoA ligase YP_007381738.1 2636989 R 1274814 CDS YP_007381739.1 443617883 14482541 complement(2638879..2639460) 1 NC_020163.1 COG3065 Starvation-inducible outer membrane lipoprotein; lipoprotein 2639460 14482541 APECO78_12830 Escherichia coli APEC O78 lipoprotein YP_007381739.1 2638879 R 1274814 CDS YP_007381740.1 443617884 14482542 complement(2639500..2640195) 1 NC_020163.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; peptidase 2640195 14482542 APECO78_12835 Escherichia coli APEC O78 peptidase YP_007381740.1 2639500 R 1274814 CDS YP_007381741.1 443617885 14482543 complement(2640253..2642163) 1 NC_020163.1 COG1199 Rad3-related DNA helicases; Helicase c2 2642163 14482543 APECO78_12840 Escherichia coli APEC O78 Helicase c2 YP_007381741.1 2640253 R 1274814 CDS YP_007381742.1 443617886 14482544 2642295..2642639 1 NC_020163.1 COG0251 Putative translation initiation inhibitor, yjgF family; hypothetical protein 2642639 14482544 APECO78_12845 Escherichia coli APEC O78 hypothetical protein YP_007381742.1 2642295 D 1274814 CDS YP_007381743.1 443617887 14482545 2643002..2643361 1 NC_020163.1 hypothetical protein 2643361 14482545 APECO78_12850 Escherichia coli APEC O78 hypothetical protein YP_007381743.1 2643002 D 1274814 CDS YP_007381744.1 443617888 14482546 complement(2643481..2643660) 1 NC_020163.1 COG3140 Uncharacterized protein conserved in bacteria; hypothetical protein 2643660 14482546 APECO78_12855 Escherichia coli APEC O78 hypothetical protein YP_007381744.1 2643481 R 1274814 CDS YP_007381745.1 443617889 14482547 2643734..2645095 1 NC_020163.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; aminodeoxychorismate synthase subunit I 2645095 14482547 APECO78_12860 Escherichia coli APEC O78 aminodeoxychorismate synthase subunit I YP_007381745.1 2643734 D 1274814 CDS YP_007381746.1 443617890 14482548 2645099..2645677 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase 2645677 14482548 APECO78_12865 Escherichia coli APEC O78 NUDIX hydrolase YP_007381746.1 2645099 D 1274814 CDS YP_007381747.1 443617891 14482549 2645861..2647225 1 NC_020163.1 COG1760 L-serine deaminase; L-serine deaminase 2647225 14482549 APECO78_12870 Escherichia coli APEC O78 L-serine deaminase YP_007381747.1 2645861 D 1274814 CDS YP_007381748.1 443617892 14482550 2647356..2648954 1 NC_020163.1 COG2200 FOG: EAL domain; phosphodiesterase 2648954 14482550 APECO78_12875 Escherichia coli APEC O78 phosphodiesterase YP_007381748.1 2647356 D 1274814 CDS YP_007381749.1 443617893 14482551 complement(2648958..2650508) 1 NC_020163.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; putative transport protein 2650508 14482551 APECO78_12880 Escherichia coli APEC O78 putative transport protein YP_007381749.1 2648958 R 1274814 CDS YP_007381750.1 443617894 14482552 2650971..2651942 1 NC_020163.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system mannose-specific transporter subunit IIAB 2651942 14482552 APECO78_12885 Escherichia coli APEC O78 PTS system mannose-specific transporter subunit IIAB YP_007381750.1 2650971 D 1274814 CDS YP_007381751.1 443617895 14482553 2652005..2652805 1 NC_020163.1 COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system mannose-specific transporter subunit IIC 2652805 14482553 APECO78_12890 Escherichia coli APEC O78 PTS system mannose-specific transporter subunit IIC YP_007381751.1 2652005 D 1274814 CDS YP_007381752.1 443617896 14482554 2652818..2653669 1 NC_020163.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system mannose-specific transporter subunit IID 2653669 14482554 APECO78_12895 Escherichia coli APEC O78 PTS system mannose-specific transporter subunit IID YP_007381752.1 2652818 D 1274814 CDS YP_007381753.1 443617897 14482555 2653724..2654182 1 NC_020163.1 COG4811 Predicted membrane protein; hypothetical protein 2654182 14482555 APECO78_12900 Escherichia coli APEC O78 hypothetical protein YP_007381753.1 2653724 D 1274814 CDS YP_007381754.1 443617898 14482556 2654611..2655177 1 NC_020163.1 COG1971 Predicted membrane protein; hypothetical protein 2655177 14482556 APECO78_12905 Escherichia coli APEC O78 hypothetical protein YP_007381754.1 2654611 D 1274814 CDS YP_007381755.1 443617899 14482557 complement(2655174..2655983) 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; 23S rRNA methyltransferase A 2655983 rrmA 14482557 rrmA Escherichia coli APEC O78 23S rRNA methyltransferase A YP_007381755.1 2655174 R 1274814 CDS YP_007381756.1 443617900 14482558 complement(2656149..2656358) 1 NC_020163.1 COG1278 Cold shock proteins; Cold shock-like protein cspC 2656358 14482558 APECO78_12915 Escherichia coli APEC O78 Cold shock-like protein cspC YP_007381756.1 2656149 R 1274814 CDS YP_007381757.1 443617901 14482559 complement(2656371..2656514) 1 NC_020163.1 hypothetical protein 2656514 14482559 APECO78_12920 Escherichia coli APEC O78 hypothetical protein YP_007381757.1 2656371 R 1274814 CDS YP_007381758.1 443617902 14482560 complement(2657183..2657470) 1 NC_020163.1 hypothetical protein 2657470 14482560 APECO78_12925 Escherichia coli APEC O78 hypothetical protein YP_007381758.1 2657183 R 1274814 CDS YP_007381759.1 443617903 14482561 complement(2657545..2657688) 1 NC_020163.1 PhoPQ regulatory protein 2657688 14482561 APECO78_12930 Escherichia coli APEC O78 PhoPQ regulatory protein YP_007381759.1 2657545 R 1274814 CDS YP_007381760.1 443617904 14482562 2657847..2658086 1 NC_020163.1 hypothetical protein 2658086 14482562 APECO78_12935 Escherichia coli APEC O78 hypothetical protein YP_007381760.1 2657847 D 1274814 CDS YP_007381761.1 443617905 14482563 complement(2658229..2659020) 1 NC_020163.1 COG1414 Transcriptional regulator; DNA-binding transcriptional regulator KdgR 2659020 14482563 APECO78_12940 Escherichia coli APEC O78 DNA-binding transcriptional regulator KdgR YP_007381761.1 2658229 R 1274814 CDS YP_007381762.1 443617906 14482564 2659197..2660570 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 2660570 14482564 APECO78_12945 Escherichia coli APEC O78 transporter YP_007381762.1 2659197 D 1274814 CDS YP_007381763.1 443617907 14482565 complement(2660616..2661497) 1 NC_020163.1 COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX 2661497 14482565 APECO78_12950 Escherichia coli APEC O78 heat shock protein HtpX YP_007381763.1 2660616 R 1274814 CDS YP_007381764.1 443617908 14482566 complement(2661689..2663737) 1 NC_020163.1 COG0793 Periplasmic protease; carboxy-terminal protease 2663737 14482566 APECO78_12955 Escherichia coli APEC O78 carboxy-terminal protease YP_007381764.1 2661689 R 1274814 CDS YP_007381765.1 443617909 14482567 complement(2663757..2664455) 1 NC_020163.1 COG3109 Activator of osmoprotectant transporter ProP; ProP expression regulator 2664455 14482567 APECO78_12960 Escherichia coli APEC O78 ProP expression regulator YP_007381765.1 2663757 R 1274814 CDS YP_007381766.1 443617910 14482568 complement(2664552..2665049) 1 NC_020163.1 COG1956 GAF domain-containing protein; hypothetical protein 2665049 14482568 APECO78_12965 Escherichia coli APEC O78 hypothetical protein YP_007381766.1 2664552 R 1274814 CDS YP_007381767.1 443617911 14482569 2665179..2666462 1 NC_020163.1 COG2995 Uncharacterized paraquat-inducible protein A; hypothetical protein 2666462 14482569 APECO78_12970 Escherichia coli APEC O78 hypothetical protein YP_007381767.1 2665179 D 1274814 CDS YP_007381768.1 443617912 14482570 2666431..2669064 1 NC_020163.1 COG3008 Paraquat-inducible protein B; hypothetical protein 2669064 14482570 APECO78_12975 Escherichia coli APEC O78 hypothetical protein YP_007381768.1 2666431 D 1274814 CDS YP_007381769.1 443617913 14482571 2669144..2670583 1 NC_020163.1 COG0144 tRNA and rRNA cytosine-C5-methylases; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2670583 yebU 14482571 yebU Escherichia coli APEC O78 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_007381769.1 2669144 D 1274814 CDS YP_007381770.1 443617914 14482572 2670701..2670937 1 NC_020163.1 hypothetical protein 2670937 14482572 APECO78_12985 Escherichia coli APEC O78 hypothetical protein YP_007381770.1 2670701 D 1274814 CDS YP_007381771.1 443617915 14482573 2671042..2671233 1 NC_020163.1 hypothetical protein 2671233 14482573 APECO78_12990 Escherichia coli APEC O78 hypothetical protein YP_007381771.1 2671042 D 1274814 CDS YP_007381772.1 443617916 14482574 complement(2671234..2671890) 1 NC_020163.1 COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine protein phosphatase 1 2671890 14482574 APECO78_12995 Escherichia coli APEC O78 serine/threonine protein phosphatase 1 YP_007381772.1 2671234 R 1274814 CDS YP_007381773.1 443617917 14482575 complement(2672115..2672201) 1 NC_020163.1 hypothetical protein 2672201 14482575 APECO78_13000 Escherichia coli APEC O78 hypothetical protein YP_007381773.1 2672115 R 1274814 CDS YP_007381774.1 443617918 14482576 complement(2672286..2672627) 1 NC_020163.1 hypothetical protein 2672627 14482576 APECO78_13005 Escherichia coli APEC O78 hypothetical protein YP_007381774.1 2672286 R 1274814 CDS YP_007381775.1 443617919 14482577 complement(2672640..2673512) 1 NC_020163.1 COG1276 Putative copper export protein; copper resistance protein D 2673512 14482577 APECO78_13010 Escherichia coli APEC O78 copper resistance protein D YP_007381775.1 2672640 R 1274814 CDS YP_007381776.1 443617920 14482578 complement(2673516..2673890) 1 NC_020163.1 COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC; hypothetical protein 2673890 14482578 APECO78_13015 Escherichia coli APEC O78 hypothetical protein YP_007381776.1 2673516 R 1274814 CDS YP_007381777.1 443617921 14482579 2674029..2674259 1 NC_020163.1 DNA polymerase III subunit theta 2674259 14482579 APECO78_13020 Escherichia coli APEC O78 DNA polymerase III subunit theta YP_007381777.1 2674029 D 1274814 CDS YP_007381778.1 443617922 14482580 2674361..2675017 1 NC_020163.1 COG0388 Predicted amidohydrolase; carbon-nitrogen family hydrolase 2675017 14482580 APECO78_13025 Escherichia coli APEC O78 carbon-nitrogen family hydrolase YP_007381778.1 2674361 D 1274814 CDS YP_007381779.1 443617923 14482581 2675041..2675703 1 NC_020163.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; exodeoxyribonuclease X 2675703 14482581 APECO78_13030 Escherichia coli APEC O78 exodeoxyribonuclease X YP_007381779.1 2675041 D 1274814 CDS YP_007381780.1 443617924 14482582 complement(2675700..2677760) 1 NC_020163.1 COG1770 Protease II; protease 2 2677760 14482582 APECO78_13035 Escherichia coli APEC O78 protease 2 YP_007381780.1 2675700 R 1274814 CDS YP_007381781.1 443617925 14482583 complement(2677969..2678628) 1 NC_020163.1 COG2979 Uncharacterized protein conserved in bacteria; hypothetical protein 2678628 14482583 APECO78_13040 Escherichia coli APEC O78 hypothetical protein YP_007381781.1 2677969 R 1274814 CDS YP_007381782.1 443617926 14482584 2678688..2678798 1 NC_020163.1 hypothetical protein 2678798 14482584 APECO78_13045 Escherichia coli APEC O78 hypothetical protein YP_007381782.1 2678688 D 1274814 CDS YP_007381783.1 443617927 14482585 complement(2678955..2679311) 1 NC_020163.1 hypothetical protein 2679311 14482585 APECO78_13050 Escherichia coli APEC O78 hypothetical protein YP_007381783.1 2678955 R 1274814 CDS YP_007381784.1 443617928 14482586 complement(2679378..2679668) 1 NC_020163.1 COG3141 Uncharacterized protein conserved in bacteria; DNA damage-inducible protein YebG 2679668 14482586 APECO78_13055 Escherichia coli APEC O78 DNA damage-inducible protein YebG YP_007381784.1 2679378 R 1274814 CDS YP_007381785.1 443617929 14482587 2679802..2680980 1 NC_020163.1 COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase); phosphoribosylglycinamide formyltransferase 2 2680980 14482587 APECO78_13060 Escherichia coli APEC O78 phosphoribosylglycinamide formyltransferase 2 YP_007381785.1 2679802 D 1274814 CDS YP_007381786.1 443617930 14482588 complement(2681036..2681677) 1 NC_020163.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2681677 14482588 APECO78_13065 Escherichia coli APEC O78 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_007381786.1 2681036 R 1274814 CDS YP_007381787.1 443617931 14482589 complement(2681714..2683525) 1 NC_020163.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase 2683525 14482589 APECO78_13070 Escherichia coli APEC O78 phosphogluconate dehydratase YP_007381787.1 2681714 R 1274814 CDS YP_007381788.1 443617932 14482590 complement(2683760..2685235) 1 NC_020163.1 COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase 2685235 14482590 APECO78_13075 Escherichia coli APEC O78 glucose-6-phosphate 1-dehydrogenase YP_007381788.1 2683760 R 1274814 CDS YP_007381789.1 443617933 14482591 2685573..2686442 1 NC_020163.1 COG1737 Transcriptional regulators; DNA-binding transcriptional regulator HexR 2686442 14482591 APECO78_13080 Escherichia coli APEC O78 DNA-binding transcriptional regulator HexR YP_007381789.1 2685573 D 1274814 CDS YP_007381790.1 443617934 14482592 2686570..2688012 1 NC_020163.1 COG0469 Pyruvate kinase; pyruvate kinase 2688012 14482592 APECO78_13085 Escherichia coli APEC O78 pyruvate kinase YP_007381790.1 2686570 D 1274814 CDS YP_007381791.1 443617935 14482593 complement(2688143..2689114) 1 NC_020163.1 COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2689114 14482593 APECO78_13090 Escherichia coli APEC O78 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_007381791.1 2688143 R 1274814 CDS YP_007381792.1 443617936 14482594 complement(2689234..2690556) 1 NC_020163.1 COG0739 Membrane proteins related to metalloendopeptidases; peptidase 2690556 14482594 APECO78_13095 Escherichia coli APEC O78 peptidase YP_007381792.1 2689234 R 1274814 CDS YP_007381793.1 443617937 14482595 complement(2690572..2691504) 1 NC_020163.1 COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin; high-affinity zinc transporter periplasmic component 2691504 znuA 14482595 znuA Escherichia coli APEC O78 high-affinity zinc transporter periplasmic component YP_007381793.1 2690572 R 1274814 CDS YP_007381794.1 443617938 14482596 2691583..2692338 1 NC_020163.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component; high-affinity zinc transporter ATPase 2692338 znuC 14482596 znuC Escherichia coli APEC O78 high-affinity zinc transporter ATPase YP_007381794.1 2691583 D 1274814 CDS YP_007381795.1 443617939 14482597 2692335..2693120 1 NC_020163.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; high-affinity zinc transporter membrane protein 2693120 14482597 APECO78_13110 Escherichia coli APEC O78 high-affinity zinc transporter membrane protein YP_007381795.1 2692335 D 1274814 CDS YP_007381796.1 443617940 14482598 complement(2693267..2694277) 1 NC_020163.1 COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB 2694277 14482598 APECO78_13115 Escherichia coli APEC O78 Holliday junction DNA helicase RuvB YP_007381796.1 2693267 R 1274814 CDS YP_007381797.1 443617941 14482599 complement(2694286..2694897) 1 NC_020163.1 COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA 2694897 ruvA 14482599 ruvA Escherichia coli APEC O78 Holliday junction DNA helicase RuvA YP_007381797.1 2694286 R 1274814 CDS YP_007381798.1 443617942 14482600 2695172..2695774 1 NC_020163.1 hypothetical protein 2695774 14482600 APECO78_13125 Escherichia coli APEC O78 hypothetical protein YP_007381798.1 2695172 D 1274814 CDS YP_007381799.1 443617943 14482601 complement(2695776..2696297) 1 NC_020163.1 COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase 2696297 14482601 APECO78_13130 Escherichia coli APEC O78 Holliday junction resolvase YP_007381799.1 2695776 R 1274814 CDS YP_007381800.1 443617944 14482602 complement(2696332..2697072) 1 NC_020163.1 COG0217 Uncharacterized conserved protein; hypothetical protein 2697072 14482602 APECO78_13135 Escherichia coli APEC O78 hypothetical protein YP_007381800.1 2696332 R 1274814 CDS YP_007381801.1 443617945 14482603 complement(2697101..2697553) 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dihydroneopterin triphosphate pyrophosphatase 2697553 nudB 14482603 nudB Escherichia coli APEC O78 dihydroneopterin triphosphate pyrophosphatase YP_007381801.1 2697101 R 1274814 CDS YP_007381802.1 443617946 14482604 complement(2697671..2699443) 1 NC_020163.1 COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA ligase 2699443 aspS 14482604 aspS Escherichia coli APEC O78 aspartyl-tRNA ligase YP_007381802.1 2697671 R 1274814 CDS YP_007381803.1 443617947 14482605 2699753..2700319 1 NC_020163.1 COG1335 Amidases related to nicotinamidase; hydrolase 2700319 14482605 APECO78_13150 Escherichia coli APEC O78 hydrolase YP_007381803.1 2699753 D 1274814 CDS YP_007381804.1 443617948 14482606 2700316..2701134 1 NC_020163.1 COG1801 Uncharacterized conserved protein; hypothetical protein 2701134 14482606 APECO78_13155 Escherichia coli APEC O78 hypothetical protein YP_007381804.1 2700316 D 1274814 CDS YP_007381805.1 443617949 14482607 2701187..2701582 1 NC_020163.1 COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily; hypothetical protein 2701582 14482607 APECO78_13160 Escherichia coli APEC O78 hypothetical protein YP_007381805.1 2701187 D 1274814 CDS YP_007381806.1 443617950 14482608 2701623..2702366 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; tRNA cmo(5)U34 methyltransferase 2702366 14482608 APECO78_13165 Escherichia coli APEC O78 tRNA cmo(5)U34 methyltransferase YP_007381806.1 2701623 D 1274814 CDS YP_007381807.1 443617951 14482609 2702363..2703334 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; tRNA mo(5)U34 methyltransferase 2703334 14482609 APECO78_13170 Escherichia coli APEC O78 tRNA mo(5)U34 methyltransferase YP_007381807.1 2702363 D 1274814 CDS YP_007381808.1 443617952 14482610 complement(2703499..2705928) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 2705928 14482610 APECO78_13175 Escherichia coli APEC O78 molybdopterin guanine dinucleotide-containing S/N-oxide reductase YP_007381808.1 2703499 R 1274814 CDS YP_007381809.1 443617953 14482611 complement(2705953..2707053) 1 NC_020163.1 COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; NapC/NirT cytochrome c domain protein 2707053 14482611 APECO78_13180 Escherichia coli APEC O78 NapC/NirT cytochrome c domain protein YP_007381809.1 2705953 R 1274814 CDS YP_007381810.1 443617954 14482612 complement(2707441..2708187) 1 NC_020163.1 COG3142 Uncharacterized protein involved in copper resistance; copper homeostasis protein CutC 2708187 14482612 APECO78_13185 Escherichia coli APEC O78 copper homeostasis protein CutC YP_007381810.1 2707441 R 1274814 CDS YP_007381811.1 443617955 14482613 complement(2708201..2708767) 1 NC_020163.1 COG3102 Uncharacterized protein conserved in bacteria; hypothetical protein 2708767 14482613 APECO78_13190 Escherichia coli APEC O78 hypothetical protein YP_007381811.1 2708201 R 1274814 CDS YP_007381812.1 443617956 14482614 2708983..2710716 1 NC_020163.1 COG0018 Arginyl-tRNA synthetase; arginyl-tRNA ligase 2710716 argS 14482614 argS Escherichia coli APEC O78 arginyl-tRNA ligase YP_007381812.1 2708983 D 1274814 CDS YP_007381813.1 443617957 14482615 2710893..2711381 1 NC_020163.1 COG3755 Uncharacterized protein conserved in bacteria; hypothetical protein 2711381 14482615 APECO78_13200 Escherichia coli APEC O78 hypothetical protein YP_007381813.1 2710893 D 1274814 CDS YP_007381814.1 443617958 14482616 complement(2711501..2711893) 1 NC_020163.1 flagellar protein FlhE 2711893 14482616 APECO78_13205 Escherichia coli APEC O78 flagellar protein FlhE YP_007381814.1 2711501 R 1274814 CDS YP_007381815.1 443617959 14482617 complement(2711893..2713971) 1 NC_020163.1 COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA 2713971 flhA 14482617 flhA Escherichia coli APEC O78 flagellar biosynthesis protein FlhA YP_007381815.1 2711893 R 1274814 CDS YP_007381816.1 443617960 14482618 complement(2713964..2715112) 1 NC_020163.1 COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB 2715112 flhB 14482618 flhB Escherichia coli APEC O78 flagellar biosynthesis protein FlhB YP_007381816.1 2713964 R 1274814 CDS YP_007381817.1 443617961 14482619 complement(2715314..2715958) 1 NC_020163.1 COG3143 Chemotaxis protein; chemotaxis regulator CheZ 2715958 14482619 APECO78_13220 Escherichia coli APEC O78 chemotaxis regulator CheZ YP_007381817.1 2715314 R 1274814 CDS YP_007381818.1 443617962 14482620 complement(2715969..2716358) 1 NC_020163.1 COG0784 FOG: CheY-like receiver; chemotaxis regulatory protein CheY 2716358 14482620 APECO78_13225 Escherichia coli APEC O78 chemotaxis regulatory protein CheY YP_007381818.1 2715969 R 1274814 CDS YP_007381819.1 443617963 14482621 complement(2716373..2717422) 1 NC_020163.1 COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; chemotaxis-specific methylesterase 2717422 14482621 APECO78_13230 Escherichia coli APEC O78 chemotaxis-specific methylesterase YP_007381819.1 2716373 R 1274814 CDS YP_007381820.1 443617964 14482622 complement(2717425..2718285) 1 NC_020163.1 COG1352 Methylase of chemotaxis methyl-accepting proteins; chemotaxis methyltransferase CheR 2718285 14482622 APECO78_13235 Escherichia coli APEC O78 chemotaxis methyltransferase CheR YP_007381820.1 2717425 R 1274814 CDS YP_007381821.1 443617965 14482623 complement(2718304..2719905) 1 NC_020163.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting protein IV 2719905 14482623 APECO78_13240 Escherichia coli APEC O78 methyl-accepting protein IV YP_007381821.1 2718304 R 1274814 CDS YP_007381822.1 443617966 14482624 complement(2719951..2721612) 1 NC_020163.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein II 2721612 14482624 APECO78_13245 Escherichia coli APEC O78 methyl-accepting chemotaxis protein II YP_007381822.1 2719951 R 1274814 CDS YP_007381823.1 443617967 14482625 complement(2721757..2722260) 1 NC_020163.1 COG0835 Chemotaxis signal transduction protein; purine-binding chemotaxis protein 2722260 14482625 APECO78_13250 Escherichia coli APEC O78 purine-binding chemotaxis protein YP_007381823.1 2721757 R 1274814 CDS YP_007381824.1 443617968 14482626 complement(2722281..2724245) 1 NC_020163.1 COG0643 Chemotaxis protein histidine kinase and related kinases; chemotaxis protein CheA 2724245 14482626 APECO78_13255 Escherichia coli APEC O78 chemotaxis protein CheA YP_007381824.1 2722281 R 1274814 CDS YP_007381825.1 443617969 14482627 complement(2724250..2725176) 1 NC_020163.1 COG1360 Flagellar motor protein; flagellar motor protein MotB 2725176 14482627 APECO78_13260 Escherichia coli APEC O78 flagellar motor protein MotB YP_007381825.1 2724250 R 1274814 CDS YP_007381826.1 443617970 14482628 complement(2725173..2726060) 1 NC_020163.1 COG1291 Flagellar motor component; flagellar motor protein MotA 2726060 14482628 APECO78_13265 Escherichia coli APEC O78 flagellar motor protein MotA YP_007381826.1 2725173 R 1274814 CDS YP_007381827.1 443617971 14482629 complement(2726187..2726765) 1 NC_020163.1 transcriptional activator FlhC 2726765 14482629 APECO78_13270 Escherichia coli APEC O78 transcriptional activator FlhC YP_007381827.1 2726187 R 1274814 CDS YP_007381828.1 443617972 14482630 complement(2726768..2727118) 1 NC_020163.1 transcriptional activator FlhD 2727118 14482630 APECO78_13275 Escherichia coli APEC O78 transcriptional activator FlhD YP_007381828.1 2726768 R 1274814 CDS YP_007381829.1 443617973 14482631 2727898..2728326 1 NC_020163.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein C 2728326 14482631 APECO78_13280 Escherichia coli APEC O78 universal stress protein C YP_007381829.1 2727898 D 1274814 CDS YP_007381830.1 443617974 14482632 complement(2728333..2729757) 1 NC_020163.1 COG0380 Trehalose-6-phosphate synthase; trehalose-6-phosphate synthase 2729757 14482632 APECO78_13285 Escherichia coli APEC O78 trehalose-6-phosphate synthase YP_007381830.1 2728333 R 1274814 CDS YP_007381831.1 443617975 14482633 complement(2729732..2730532) 1 NC_020163.1 COG1877 Trehalose-6-phosphatase; trehalose-6-phosphate phosphatase 2730532 14482633 APECO78_13290 Escherichia coli APEC O78 trehalose-6-phosphate phosphatase YP_007381831.1 2729732 R 1274814 CDS YP_007381832.1 443617976 14482634 complement(2730699..2731685) 1 NC_020163.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; L-arabinose transporter permease protein 2731685 araH 14482634 araH Escherichia coli APEC O78 L-arabinose transporter permease protein YP_007381832.1 2730699 R 1274814 CDS YP_007381833.1 443617977 14482635 complement(2731700..2733214) 1 NC_020163.1 COG1129 ABC-type sugar transport system, ATPase component; L-arabinose transporter ATP-binding protein 2733214 araG 14482635 araG Escherichia coli APEC O78 L-arabinose transporter ATP-binding protein YP_007381833.1 2731700 R 1274814 CDS YP_007381834.1 443617978 14482636 complement(2733284..2734273) 1 NC_020163.1 COG1879 ABC-type sugar transport system, periplasmic component; L-arabinose ABC transporter substrate binding component 2734273 14482636 APECO78_13305 Escherichia coli APEC O78 L-arabinose ABC transporter substrate binding component YP_007381834.1 2733284 R 1274814 CDS YP_007381835.1 443617979 14482637 2735070..2735573 1 NC_020163.1 COG1528 Ferritin-like protein; ferritin-like protein 2735573 14482637 APECO78_13310 Escherichia coli APEC O78 ferritin-like protein YP_007381835.1 2735070 D 1274814 CDS YP_007381836.1 443617980 14482638 complement(2735652..2735903) 1 NC_020163.1 hypothetical protein 2735903 14482638 APECO78_13315 Escherichia coli APEC O78 hypothetical protein YP_007381836.1 2735652 R 1274814 CDS YP_007381837.1 443617981 14482639 2736861..2737358 1 NC_020163.1 COG1528 Ferritin-like protein; ferritin 2737358 14482639 APECO78_13320 Escherichia coli APEC O78 ferritin YP_007381837.1 2736861 D 1274814 CDS YP_007381838.1 443617982 14482640 complement(2737396..2737635) 1 NC_020163.1 hypothetical protein 2737635 14482640 APECO78_13325 Escherichia coli APEC O78 hypothetical protein YP_007381838.1 2737396 R 1274814 CDS YP_007381839.1 443617983 14482641 2737826..2739037 1 NC_020163.1 COG0814 Amino acid permeases; tyrosine transporter TyrP 2739037 14482641 APECO78_13330 Escherichia coli APEC O78 tyrosine transporter TyrP YP_007381839.1 2737826 D 1274814 CDS YP_007381840.1 443617984 14482642 complement(2739099..2739764) 1 NC_020163.1 COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; hypothetical protein 2739764 14482642 APECO78_13335 Escherichia coli APEC O78 hypothetical protein YP_007381840.1 2739099 R 1274814 CDS YP_007381841.1 443617985 14484623 complement(2740414..2740962) 1 NC_020163.1 COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthetase 2740962 14484623 APECO78_13340 Escherichia coli APEC O78 phosphatidylglycerophosphate synthetase YP_007381841.1 2740414 R 1274814 CDS YP_007381842.1 443617986 14482644 complement(2741019..2742851) 1 NC_020163.1 COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C 2742851 uvrC 14482644 uvrC Escherichia coli APEC O78 excinuclease ABC subunit C YP_007381842.1 2741019 R 1274814 CDS YP_007381843.1 443617987 14482645 complement(2742848..2743504) 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; response regulator 2743504 14482645 APECO78_13350 Escherichia coli APEC O78 response regulator YP_007381843.1 2742848 R 1274814 CDS YP_007381844.1 443617988 14482646 2743800..2743976 1 NC_020163.1 hypothetical protein 2743976 14482646 APECO78_13355 Escherichia coli APEC O78 hypothetical protein YP_007381844.1 2743800 D 1274814 CDS YP_007381845.1 443617989 14482647 2743963..2744187 1 NC_020163.1 hypothetical protein 2744187 14482647 APECO78_13360 Escherichia coli APEC O78 hypothetical protein YP_007381845.1 2743963 D 1274814 CDS YP_007381846.1 443617990 14482648 complement(2744255..2744977) 1 NC_020163.1 COG2771 DNA-binding HTH domain-containing proteins; DNA-binding transcriptional activator SdiA 2744977 14482648 APECO78_13365 Escherichia coli APEC O78 DNA-binding transcriptional activator SdiA YP_007381846.1 2744255 R 1274814 CDS YP_007381847.1 443617991 14482649 complement(2745207..2745959) 1 NC_020163.1 COG1126 ABC-type polar amino acid transport system, ATPase component; amino-acid ABC transporter ATP-binding protein YecC 2745959 14482649 APECO78_13370 Escherichia coli APEC O78 amino-acid ABC transporter ATP-binding protein YecC YP_007381847.1 2745207 R 1274814 CDS YP_007381848.1 443617992 14482650 complement(2745956..2746624) 1 NC_020163.1 COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 2746624 14482650 APECO78_13375 Escherichia coli APEC O78 amino acid ABC transporter permease YP_007381848.1 2745956 R 1274814 CDS YP_007381849.1 443617993 14482651 complement(2746639..2747625) 1 NC_020163.1 COG2515 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase 2747625 14482651 APECO78_13380 Escherichia coli APEC O78 D-cysteine desulfhydrase YP_007381849.1 2746639 R 1274814 CDS YP_007381850.1 443617994 14482652 complement(2747730..2748530) 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; cystine transporter subunit 2748530 14482652 APECO78_13385 Escherichia coli APEC O78 cystine transporter subunit YP_007381850.1 2747730 R 1274814 CDS YP_007381851.1 443617995 14482653 complement(2748618..2749169) 1 NC_020163.1 flagella biosynthesis protein FliZ 2749169 14482653 APECO78_13390 Escherichia coli APEC O78 flagella biosynthesis protein FliZ YP_007381851.1 2748618 R 1274814 CDS YP_007381852.1 443617996 14482654 complement(2749215..2749934) 1 NC_020163.1 COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor 2749934 fliA 14482654 fliA Escherichia coli APEC O78 flagellar biosynthesis sigma factor YP_007381852.1 2749215 R 1274814 CDS YP_007381853.1 443617997 14482655 complement(2750099..2750206) 1 NC_020163.1 hypothetical protein 2750206 14482655 APECO78_13400 Escherichia coli APEC O78 hypothetical protein YP_007381853.1 2750099 R 1274814 CDS YP_007381854.1 443617998 14482656 complement(2750255..2752267) 1 NC_020163.1 COG1344 Flagellin and related hook-associated proteins; flagellin 2752267 14482656 APECO78_13405 Escherichia coli APEC O78 flagellin YP_007381854.1 2750255 R 1274814 CDS YP_007381855.1 443617999 14482657 2752533..2753939 1 NC_020163.1 COG1345 Flagellar capping protein; flagellar capping protein 2753939 fliD 14482657 fliD Escherichia coli APEC O78 flagellar capping protein YP_007381855.1 2752533 D 1274814 CDS YP_007381856.1 443618000 14482658 2753964..2754374 1 NC_020163.1 COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 2754374 fliS 14482658 fliS Escherichia coli APEC O78 flagellar protein FliS YP_007381856.1 2753964 D 1274814 CDS YP_007381857.1 443618001 14482659 2754374..2754739 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; flagellar biosynthesis protein FliT 2754739 14482659 APECO78_13420 Escherichia coli APEC O78 flagellar biosynthesis protein FliT YP_007381857.1 2754374 D 1274814 CDS YP_007381858.1 443618002 14482660 2754817..2756304 1 NC_020163.1 COG0366 Glycosidases; cytoplasmic alpha-amylase 2756304 14482660 APECO78_13425 Escherichia coli APEC O78 cytoplasmic alpha-amylase YP_007381858.1 2754817 D 1274814 CDS YP_007381859.1 443618003 14482661 complement(2756338..2756751) 1 NC_020163.1 lipoprotein 2756751 14482661 APECO78_13430 Escherichia coli APEC O78 lipoprotein YP_007381859.1 2756338 R 1274814 CDS YP_007381860.1 443618004 14482662 2756938..2758143 1 NC_020163.1 COG2391 Predicted transporter component; hypothetical protein 2758143 14482662 APECO78_13435 Escherichia coli APEC O78 hypothetical protein YP_007381860.1 2756938 D 1274814 CDS YP_007381861.1 443618005 14482663 2758140..2758373 1 NC_020163.1 COG0425 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein 2758373 14482663 APECO78_13440 Escherichia coli APEC O78 hypothetical protein YP_007381861.1 2758140 D 1274814 CDS YP_007381862.1 443618006 14482664 2758482..2759153 1 NC_020163.1 COG2135 Uncharacterized conserved protein; hypothetical protein 2759153 14482664 APECO78_13445 Escherichia coli APEC O78 hypothetical protein YP_007381862.1 2758482 D 1274814 CDS YP_007381863.1 443618007 14482665 complement(2759138..2760241) 1 NC_020163.1 COG0675 Transposase and inactivated derivatives; putative transposase 2760241 14482665 APECO78_13450 Escherichia coli APEC O78 putative transposase YP_007381863.1 2759138 R 1274814 CDS YP_007381864.1 443618008 14482666 2760372..2760596 1 NC_020163.1 COG1943 Transposase and inactivated derivatives; putative IS609 transposase TnpA 2760596 14482666 APECO78_13455 Escherichia coli APEC O78 putative IS609 transposase TnpA YP_007381864.1 2760372 D 1274814 CDS YP_007381865.1 443618009 14482667 complement(2761690..2762487) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; putative ARAC-type regulatory protein 2762487 14482667 APECO78_13460 Escherichia coli APEC O78 putative ARAC-type regulatory protein YP_007381865.1 2761690 R 1274814 CDS YP_007381866.1 443618010 14482668 complement(2762497..2763048) 1 NC_020163.1 COG1881 Phospholipid-binding protein; kinase inhibitor 2763048 14482668 APECO78_13465 Escherichia coli APEC O78 kinase inhibitor YP_007381866.1 2762497 R 1274814 CDS YP_007381867.1 443618011 14482669 2763626..2763805 1 NC_020163.1 hypothetical protein 2763805 14482669 APECO78_13470 Escherichia coli APEC O78 hypothetical protein YP_007381867.1 2763626 D 1274814 CDS YP_007381868.1 443618012 14482670 complement(2763883..2764197) 1 NC_020163.1 COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE 2764197 fliE 14482670 fliE Escherichia coli APEC O78 flagellar hook-basal body protein FliE YP_007381868.1 2763883 R 1274814 CDS YP_007381869.1 443618013 14482671 2764412..2766070 1 NC_020163.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 2766070 fliF 14482671 fliF Escherichia coli APEC O78 flagellar MS-ring protein YP_007381869.1 2764412 D 1274814 CDS YP_007381870.1 443618014 14482672 2766063..2767058 1 NC_020163.1 COG1536 Flagellar motor switch protein; flagellar motor switch protein G 2767058 fliG 14482672 fliG Escherichia coli APEC O78 flagellar motor switch protein G YP_007381870.1 2766063 D 1274814 CDS YP_007381871.1 443618015 14482673 2767051..2767737 1 NC_020163.1 COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 2767737 fliH 14482673 fliH Escherichia coli APEC O78 flagellar assembly protein H YP_007381871.1 2767051 D 1274814 CDS YP_007381872.1 443618016 14482674 2767737..2769110 1 NC_020163.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase 2769110 fliI 14482674 fliI Escherichia coli APEC O78 flagellum-specific ATP synthase YP_007381872.1 2767737 D 1274814 CDS YP_007381873.1 443618017 14482675 2769129..2769572 1 NC_020163.1 COG2882 Flagellar biosynthesis chaperone; flagellar biosynthesis chaperone 2769572 fliJ 14482675 fliJ Escherichia coli APEC O78 flagellar biosynthesis chaperone YP_007381873.1 2769129 D 1274814 CDS YP_007381874.1 443618018 14482676 2769569..2770696 1 NC_020163.1 COG3144 Flagellar hook-length control protein; flagellar hook-length control protein 2770696 14482676 APECO78_13505 Escherichia coli APEC O78 flagellar hook-length control protein YP_007381874.1 2769569 D 1274814 CDS YP_007381875.1 443618019 14482677 2770801..2771265 1 NC_020163.1 COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL 2771265 fliL 14482677 fliL Escherichia coli APEC O78 flagellar basal body-associated protein FliL YP_007381875.1 2770801 D 1274814 CDS YP_007381876.1 443618020 14482678 2771270..2772274 1 NC_020163.1 COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 2772274 fliM 14482678 fliM Escherichia coli APEC O78 flagellar motor switch protein FliM YP_007381876.1 2771270 D 1274814 CDS YP_007381877.1 443618021 14482679 2772271..2772684 1 NC_020163.1 COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein FliN 2772684 fliN 14482679 fliN Escherichia coli APEC O78 flagellar motor switch protein FliN YP_007381877.1 2772271 D 1274814 CDS YP_007381878.1 443618022 14482680 2772687..2773052 1 NC_020163.1 flagellar biosynthesis protein FliO 2773052 14482680 APECO78_13525 Escherichia coli APEC O78 flagellar biosynthesis protein FliO YP_007381878.1 2772687 D 1274814 CDS YP_007381879.1 443618023 14482681 2773052..2773789 1 NC_020163.1 COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 2773789 fliP 14482681 fliP Escherichia coli APEC O78 flagellar biosynthesis protein FliP YP_007381879.1 2773052 D 1274814 CDS YP_007381880.1 443618024 14482682 2773799..2774068 1 NC_020163.1 COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ 2774068 fliQ 14482682 fliQ Escherichia coli APEC O78 flagellar biosynthesis protein FliQ YP_007381880.1 2773799 D 1274814 CDS YP_007381881.1 443618025 14482683 2774076..2774861 1 NC_020163.1 COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR 2774861 fliR 14482683 fliR Escherichia coli APEC O78 flagellar biosynthesis protein FliR YP_007381881.1 2774076 D 1274814 CDS YP_007381882.1 443618026 14482684 2775151..2775774 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; colanic acid capsular biosynthesis activation protein A 2775774 rcsA 14482684 rcsA Escherichia coli APEC O78 colanic acid capsular biosynthesis activation protein A YP_007381882.1 2775151 D 1274814 CDS YP_007381883.1 443618027 14482685 complement(2775818..2776006) 1 NC_020163.1 hypothetical protein 2776006 14482685 APECO78_13550 Escherichia coli APEC O78 hypothetical protein YP_007381883.1 2775818 R 1274814 CDS YP_007381884.1 443618028 14482686 2776169..2776396 1 NC_020163.1 hypothetical protein 2776396 14482686 APECO78_13555 Escherichia coli APEC O78 hypothetical protein YP_007381884.1 2776169 D 1274814 CDS YP_007381885.1 443618029 14482687 2776694..2777512 1 NC_020163.1 COG3769 Predicted hydrolase (HAD superfamily); mannosyl-3-phosphoglycerate phosphatase 2777512 14482687 APECO78_13560 Escherichia coli APEC O78 mannosyl-3-phosphoglycerate phosphatase YP_007381885.1 2776694 D 1274814 CDS YP_007381886.1 443618030 14482688 complement(2777509..2779203) 1 NC_020163.1 COG2199 FOG: GGDEF domain; diguanylate cyclase YedQ 2779203 14482688 APECO78_13565 Escherichia coli APEC O78 diguanylate cyclase YedQ YP_007381886.1 2777509 R 1274814 CDS YP_007381887.1 443618031 14482689 complement(2779374..2779556) 1 NC_020163.1 COG5475 Uncharacterized small protein; hypothetical protein 2779556 14482689 APECO78_13570 Escherichia coli APEC O78 hypothetical protein YP_007381887.1 2779374 R 1274814 CDS YP_007381888.1 443618032 14482690 complement(2779635..2780552) 1 NC_020163.1 COG2354 Uncharacterized protein conserved in bacteria; hypothetical protein 2780552 14482690 APECO78_13575 Escherichia coli APEC O78 hypothetical protein YP_007381888.1 2779635 R 1274814 CDS YP_007381889.1 443618033 14482691 2780725..2781645 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; DMT superfamily transporter inner membrane protein 2781645 14482691 APECO78_13580 Escherichia coli APEC O78 DMT superfamily transporter inner membrane protein YP_007381889.1 2780725 D 1274814 CDS YP_007381890.1 443618034 14482692 complement(2781634..2782104) 1 NC_020163.1 COG3727 DNA G:T-mismatch repair endonuclease; very short patch repair endonuclease 2782104 14482692 APECO78_13585 Escherichia coli APEC O78 very short patch repair endonuclease YP_007381890.1 2781634 R 1274814 CDS YP_007381891.1 443618035 14482693 complement(2782085..2783503) 1 NC_020163.1 COG0270 Site-specific DNA methylase; DNA cytosine methylase 2783503 14482693 APECO78_13590 Escherichia coli APEC O78 DNA cytosine methylase YP_007381891.1 2782085 R 1274814 CDS YP_007381892.1 443618036 14482694 complement(2783570..2784265) 1 NC_020163.1 COG1418 Predicted HD superfamily hydrolase; hydrolase 2784265 14482694 APECO78_13595 Escherichia coli APEC O78 hydrolase YP_007381892.1 2783570 R 1274814 CDS YP_007381893.1 443618037 14482695 complement(2784305..2784670) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; hypothetical protein 2784670 14482695 APECO78_13600 Escherichia coli APEC O78 hypothetical protein YP_007381893.1 2784305 R 1274814 CDS YP_007381894.1 443618038 14482696 2785237..2786295 1 NC_020163.1 COG3203 Outer membrane protein (porin); hypothetical protein 2786295 14482696 APECO78_13605 Escherichia coli APEC O78 hypothetical protein YP_007381894.1 2785237 D 1274814 CDS YP_007381895.1 443618039 14482697 complement(2786296..2786463) 1 NC_020163.1 hypothetical protein 2786463 14482697 APECO78_13610 Escherichia coli APEC O78 hypothetical protein YP_007381895.1 2786296 R 1274814 CDS YP_007381896.1 443618040 14482698 2786887..2787738 1 NC_020163.1 COG0693 Putative intracellular protease/amidase; chaperone protein HchA 2787738 14482698 APECO78_13615 Escherichia coli APEC O78 chaperone protein HchA YP_007381896.1 2786887 D 1274814 CDS YP_007381897.1 443618041 14482699 complement(2787846..2789204) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; two-component sensor kinase 2789204 14482699 APECO78_13620 Escherichia coli APEC O78 two-component sensor kinase YP_007381897.1 2787846 R 1274814 CDS YP_007381898.1 443618042 14482700 complement(2789204..2789875) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulatory protein YedW 2789875 14482700 APECO78_13625 Escherichia coli APEC O78 transcriptional regulatory protein YedW YP_007381898.1 2789204 R 1274814 CDS YP_007381899.1 443618043 14482701 2790008..2790421 1 NC_020163.1 COG2351 Transthyretin-like protein; hydroxyisourate hydrolase 2790421 14482701 APECO78_13630 Escherichia coli APEC O78 hydroxyisourate hydrolase YP_007381899.1 2790008 D 1274814 CDS YP_007381900.1 443618044 14482702 2790530..2791534 1 NC_020163.1 COG2041 Sulfite oxidase and related enzymes; TMAO/DMSO reductase 2791534 14482702 APECO78_13635 Escherichia coli APEC O78 TMAO/DMSO reductase YP_007381900.1 2790530 D 1274814 CDS YP_007381901.1 443618045 14482703 2791535..2792170 1 NC_020163.1 COG2717 Predicted membrane protein; sulfite oxidase subunit YedZ 2792170 14482703 APECO78_13640 Escherichia coli APEC O78 sulfite oxidase subunit YedZ YP_007381901.1 2791535 D 1274814 CDS YP_007381902.1 443618046 14482704 2792427..2793077 1 NC_020163.1 COG3443 Predicted periplasmic or secreted protein; hypothetical protein 2793077 14482704 APECO78_13645 Escherichia coli APEC O78 hypothetical protein YP_007381902.1 2792427 D 1274814 CDS YP_007381903.1 443618047 14482705 2793420..2793950 1 NC_020163.1 COG3038 Cytochrome B561; cytochrome 2793950 14482705 APECO78_13650 Escherichia coli APEC O78 cytochrome YP_007381903.1 2793420 D 1274814 CDS YP_007381904.1 443618048 14484624 2796258..2797055 1 NC_020163.1 COG3228 Uncharacterized protein conserved in bacteria; DgsA anti-repressor MtfA 2797055 14484624 APECO78_13655 Escherichia coli APEC O78 DgsA anti-repressor MtfA YP_007381904.1 2796258 D 1274814 CDS YP_007381905.1 443618049 14484625 complement(2800050..2800934) 1 NC_020163.1 hypothetical protein 2800934 14484625 APECO78_13670 Escherichia coli APEC O78 hypothetical protein YP_007381905.1 2800050 R 1274814 CDS YP_007381906.1 443618050 14482708 complement(2801876..2802025) 1 NC_020163.1 COG3423 Predicted transcriptional regulator; transcriptional regulator Nlp 2802025 14482708 APECO78_13675 Escherichia coli APEC O78 transcriptional regulator Nlp YP_007381906.1 2801876 R 1274814 CDS YP_007381907.1 443618051 14482709 complement(2802022..2802483) 1 NC_020163.1 hypothetical protein 2802483 14482709 APECO78_13680 Escherichia coli APEC O78 hypothetical protein YP_007381907.1 2802022 R 1274814 CDS YP_007381908.1 443618052 14482710 2803002..2804348 1 NC_020163.1 COG3209 Rhs family protein; YD repeat-containing protein 2804348 14482710 APECO78_13685 Escherichia coli APEC O78 YD repeat-containing protein YP_007381908.1 2803002 D 1274814 CDS YP_007381909.1 443618053 14482711 2804342..2807191 1 NC_020163.1 COG3209 Rhs family protein; YD repeat-containing protein 2807191 14482711 APECO78_13690 Escherichia coli APEC O78 YD repeat-containing protein YP_007381909.1 2804342 D 1274814 CDS YP_007381910.1 443618054 14482712 2807179..2807571 1 NC_020163.1 hypothetical protein 2807571 14482712 APECO78_13695 Escherichia coli APEC O78 hypothetical protein YP_007381910.1 2807179 D 1274814 CDS YP_007381911.1 443618055 14482713 2808334..2809893 1 NC_020163.1 hypothetical protein 2809893 14482713 APECO78_13700 Escherichia coli APEC O78 hypothetical protein YP_007381911.1 2808334 D 1274814 CDS YP_007381912.1 443618056 14482714 2809844..2816197 1 NC_020163.1 hypothetical protein 2816197 14482714 APECO78_13705 Escherichia coli APEC O78 hypothetical protein YP_007381912.1 2809844 D 1274814 CDS YP_007381913.1 443618057 14482715 complement(2816459..2817511) 1 NC_020163.1 COG0859 ADP-heptose:LPS heptosyltransferase; hypothetical protein 2817511 14482715 APECO78_13710 Escherichia coli APEC O78 hypothetical protein YP_007381913.1 2816459 R 1274814 CDS YP_007381914.1 443618058 14482716 2817826..2819142 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; shikimate transporter 2819142 14482716 APECO78_13715 Escherichia coli APEC O78 shikimate transporter YP_007381914.1 2817826 D 1274814 CDS YP_007381915.1 443618059 14482717 2819244..2820698 1 NC_020163.1 COG0775 Nucleoside phosphorylase; AMP nucleosidase 2820698 14482717 APECO78_13720 Escherichia coli APEC O78 AMP nucleosidase YP_007381915.1 2819244 D 1274814 CDS YP_007381916.1 443618060 14482718 2821041..2821757 1 NC_020163.1 COG0217 Uncharacterized conserved protein; hypothetical protein 2821757 14482718 APECO78_13725 Escherichia coli APEC O78 hypothetical protein YP_007381916.1 2821041 D 1274814 CDS YP_007381917.1 443618061 14484626 complement(2822392..2824032) 1 NC_020163.1 COG0534 Na+-driven multidrug efflux pump; MATE family multidrug exporter 2824032 14484626 APECO78_13730 Escherichia coli APEC O78 MATE family multidrug exporter YP_007381917.1 2822392 R 1274814 CDS YP_007381918.1 443618062 14484627 complement(2824153..2825103) 1 NC_020163.1 COG0583 Transcriptional regulator; transcriptional regulator Cbl 2825103 cbl 14484627 cbl Escherichia coli APEC O78 transcriptional regulator Cbl YP_007381918.1 2824153 R 1274814 CDS YP_007381919.1 443618063 14482721 complement(2825205..2826122) 1 NC_020163.1 COG0583 Transcriptional regulator; nitrogen assimilation transcriptional regulator 2826122 14482721 APECO78_13740 Escherichia coli APEC O78 nitrogen assimilation transcriptional regulator YP_007381919.1 2825205 R 1274814 CDS YP_007381920.1 443618064 14484628 complement(2826580..2827512) 1 NC_020163.1 COG1376 Uncharacterized protein conserved in bacteria; L,D-transpeptidase 2827512 14484628 APECO78_13745 Escherichia coli APEC O78 L,D-transpeptidase YP_007381920.1 2826580 R 1274814 CDS YP_007381921.1 443618065 14482723 complement(2827577..2828656) 1 NC_020163.1 COG2038 NaMN:DMB phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2828656 cobT 14482723 cobT Escherichia coli APEC O78 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_007381921.1 2827577 R 1274814 CDS YP_007381922.1 443618066 14482724 complement(2828668..2829411) 1 NC_020163.1 COG0368 Cobalamin-5-phosphate synthase; cobalamin synthase 2829411 cobS 14482724 cobS Escherichia coli APEC O78 cobalamin synthase YP_007381922.1 2828668 R 1274814 CDS YP_007381923.1 443618067 14482725 complement(2829408..2829953) 1 NC_020163.1 COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 2829953 cobU 14482725 cobU Escherichia coli APEC O78 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_007381923.1 2829408 R 1274814 CDS YP_007381924.1 443618068 14482726 2830177..2830311 1 NC_020163.1 putative propanediol utilization protein 2830311 14482726 APECO78_13765 Escherichia coli APEC O78 putative propanediol utilization protein YP_007381924.1 2830177 D 1274814 CDS YP_007381925.1 443618069 14482727 complement(2830412..2830741) 1 NC_020163.1 COG2926 Uncharacterized protein conserved in bacteria; hypothetical protein 2830741 14482727 APECO78_13770 Escherichia coli APEC O78 hypothetical protein YP_007381925.1 2830412 R 1274814 CDS YP_007381926.1 443618070 14482728 complement(2830913..2831971) 1 NC_020163.1 COG1289 Predicted membrane protein; inner membrane protein YeeA 2831971 14482728 APECO78_13775 Escherichia coli APEC O78 inner membrane protein YeeA YP_007381926.1 2830913 R 1274814 CDS YP_007381927.1 443618071 14482729 complement(2832170..2832643) 1 NC_020163.1 COG3449 DNA gyrase inhibitor; DNA gyrase inhibitor 2832643 14482729 APECO78_13780 Escherichia coli APEC O78 DNA gyrase inhibitor YP_007381927.1 2832170 R 1274814 CDS YP_007381928.1 443618072 14482730 complement(2832762..2833928) 1 NC_020163.1 COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase 2833928 dacD 14482730 dacD Escherichia coli APEC O78 D-alanyl-D-alanine carboxypeptidase YP_007381928.1 2832762 R 1274814 CDS YP_007381929.1 443618073 14482731 2834140..2835564 1 NC_020163.1 COG2925 Exonuclease I; exonuclease I 2835564 sbcB 14482731 sbcB Escherichia coli APEC O78 exonuclease I YP_007381929.1 2834140 D 1274814 CDS YP_007381930.1 443618074 14482732 complement(2835607..2835834) 1 NC_020163.1 COG0425 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein 2835834 14482732 APECO78_13795 Escherichia coli APEC O78 hypothetical protein YP_007381930.1 2835607 R 1274814 CDS YP_007381931.1 443618075 14482733 complement(2835848..2836906) 1 NC_020163.1 COG2391 Predicted transporter component; putative inner membrane protein 2836906 14482733 APECO78_13800 Escherichia coli APEC O78 putative inner membrane protein YP_007381931.1 2835848 R 1274814 CDS YP_007381932.1 443618076 14482734 complement(2837084..2838442) 1 NC_020163.1 COG0531 Amino acid transporters; amino acid permease 2838442 14482734 APECO78_13805 Escherichia coli APEC O78 amino acid permease YP_007381932.1 2837084 R 1274814 CDS YP_007381933.1 443618077 14482735 complement(2838709..2839638) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 2839638 14482735 APECO78_13810 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007381933.1 2838709 R 1274814 CDS YP_007381934.1 443618078 14482736 complement(2839684..2840508) 1 NC_020163.1 COG0451 Nucleoside-diphosphate-sugar epimerases; epimerase, with NAD(P)-binding Rossmann-fold domain 2840508 14482736 APECO78_13815 Escherichia coli APEC O78 epimerase, with NAD(P)-binding Rossmann-fold domain YP_007381934.1 2839684 R 1274814 CDS YP_007381935.1 443618079 14482737 complement(2840591..2840845) 1 NC_020163.1 COG4115 Uncharacterized protein conserved in bacteria; Toxin yoeB 2840845 14482737 APECO78_13820 Escherichia coli APEC O78 Toxin yoeB YP_007381935.1 2840591 R 1274814 CDS YP_007381936.1 443618080 14482738 complement(2840842..2841093) 1 NC_020163.1 COG2161 Antitoxin of toxin-antitoxin stability system; antitoxin YefM 2841093 14482738 APECO78_13825 Escherichia coli APEC O78 antitoxin YefM YP_007381936.1 2840842 R 1274814 CDS YP_007381937.1 443618081 14482739 2841573..2842472 1 NC_020163.1 COG0040 ATP phosphoribosyltransferase; ATP phosphoribosyltransferase 2842472 hisG 14482739 hisG Escherichia coli APEC O78 ATP phosphoribosyltransferase YP_007381937.1 2841573 D 1274814 CDS YP_007381938.1 443618082 14482740 2842478..2843782 1 NC_020163.1 COG0141 Histidinol dehydrogenase; bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 2843782 hisD 14482740 hisD Escherichia coli APEC O78 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase YP_007381938.1 2842478 D 1274814 CDS YP_007381939.1 443618083 14482741 2843779..2844849 1 NC_020163.1 COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; histidinol-phosphate aminotransferase 2844849 14482741 APECO78_13840 Escherichia coli APEC O78 histidinol-phosphate aminotransferase YP_007381939.1 2843779 D 1274814 CDS YP_007381940.1 443618084 14482742 2844849..2845916 1 NC_020163.1 COG0241 Histidinol phosphatase and related phosphatases; includes histidinol-phosphatase; imidazoleglycerol-phosphat dehydratase; histidine biosynthesis bifunctional protein 2845916 14482742 APECO78_13845 Escherichia coli APEC O78 histidine biosynthesis bifunctional protein YP_007381940.1 2844849 D 1274814 CDS YP_007381941.1 443618085 14482743 2845916..2846506 1 NC_020163.1 COG0118 Glutamine amidotransferase; imidazole glycerol phosphate synthase subunit HisH 2846506 hisH 14482743 hisH Escherichia coli APEC O78 imidazole glycerol phosphate synthase subunit HisH YP_007381941.1 2845916 D 1274814 CDS YP_007381942.1 443618086 14482744 2846506..2847243 1 NC_020163.1 COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino imidazole-4-carboxamide isomerase] 2847243 14482744 APECO78_13855 Escherichia coli APEC O78 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino imidazole-4-carboxamide isomerase] YP_007381942.1 2846506 D 1274814 CDS YP_007381943.1 443618087 14482745 2847225..2848001 1 NC_020163.1 COG0107 Imidazoleglycerol-phosphate synthase; imidazole glycerol phosphate synthase subunit HisF 2848001 14482745 APECO78_13860 Escherichia coli APEC O78 imidazole glycerol phosphate synthase subunit HisF YP_007381943.1 2847225 D 1274814 CDS YP_007381944.1 443618088 14482746 2847995..2848606 1 NC_020163.1 COG0139 Phosphoribosyl-AMP cyclohydrolase; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 2848606 14482746 APECO78_13865 Escherichia coli APEC O78 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_007381944.1 2847995 D 1274814 CDS YP_007381945.1 443618089 14482747 complement(2848703..2849680) 1 NC_020163.1 COG3765 Chain length determinant protein; chain length determinant protein WzzB 2849680 14482747 APECO78_13870 Escherichia coli APEC O78 chain length determinant protein WzzB YP_007381945.1 2848703 R 1274814 CDS YP_007381946.1 443618090 14482748 complement(2849826..2850992) 1 NC_020163.1 COG1004 Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 2850992 14482748 APECO78_13875 Escherichia coli APEC O78 UDP-glucose 6-dehydrogenase YP_007381946.1 2849826 R 1274814 CDS YP_007381947.1 443618091 14482749 complement(2851241..2852647) 1 NC_020163.1 COG0362 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase 2852647 14482749 APECO78_13880 Escherichia coli APEC O78 6-phosphogluconate dehydrogenase YP_007381947.1 2851241 R 1274814 CDS YP_007381948.1 443618092 14482750 complement(2852710..2854125) 1 NC_020163.1 putative polysaccharide biosynthesis protein 2854125 14482750 APECO78_13885 Escherichia coli APEC O78 putative polysaccharide biosynthesis protein YP_007381948.1 2852710 R 1274814 CDS YP_007381949.1 443618093 14482751 complement(2854122..2854856) 1 NC_020163.1 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); putative capsular polysaccharide 2854856 14482751 APECO78_13890 Escherichia coli APEC O78 putative capsular polysaccharide YP_007381949.1 2854122 R 1274814 CDS YP_007381950.1 443618094 14482752 complement(2854853..2856475) 1 NC_020163.1 capsular polysaccharide 2856475 14482752 APECO78_13895 Escherichia coli APEC O78 capsular polysaccharide YP_007381950.1 2854853 R 1274814 CDS YP_007381951.1 443618095 14482753 complement(2856472..2856849) 1 NC_020163.1 putative capsule biosynthesis phosphatase 2856849 14482753 APECO78_13900 Escherichia coli APEC O78 putative capsule biosynthesis phosphatase YP_007381951.1 2856472 R 1274814 CDS YP_007381952.1 443618096 14482754 complement(2856852..2857973) 1 NC_020163.1 polymerase 2857973 14482754 APECO78_13905 Escherichia coli APEC O78 polymerase YP_007381952.1 2856852 R 1274814 CDS YP_007381953.1 443618097 14482755 complement(2857975..2859096) 1 NC_020163.1 COG0438 Glycosyltransferase; putative UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 2859096 14482755 APECO78_13910 Escherichia coli APEC O78 putative UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_007381953.1 2857975 R 1274814 CDS YP_007381954.1 443618098 14482756 complement(2859093..2860052) 1 NC_020163.1 hypothetical protein 2860052 14482756 APECO78_13915 Escherichia coli APEC O78 hypothetical protein YP_007381954.1 2859093 R 1274814 CDS YP_007381955.1 443618099 14482757 complement(2860039..2861475) 1 NC_020163.1 COG1109 Phosphomannomutase; phosphomannomutase CpsG 2861475 14482757 APECO78_13920 Escherichia coli APEC O78 phosphomannomutase CpsG YP_007381955.1 2860039 R 1274814 CDS YP_007381956.1 443618100 14482758 complement(2861497..2862921) 1 NC_020163.1 COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanyltransferase 2862921 cpsB 14482758 cpsB Escherichia coli APEC O78 mannose-1-phosphate guanyltransferase YP_007381956.1 2861497 R 1274814 CDS YP_007381957.1 443618101 14482759 complement(2862918..2864027) 1 NC_020163.1 COG0438 Glycosyltransferase; putative glycosyl transferase 2864027 14482759 APECO78_13930 Escherichia coli APEC O78 putative glycosyl transferase YP_007381957.1 2862918 R 1274814 CDS YP_007381958.1 443618102 14482760 complement(2864048..2865190) 1 NC_020163.1 COG0438 Glycosyltransferase; hypothetical protein 2865190 14482760 APECO78_13935 Escherichia coli APEC O78 hypothetical protein YP_007381958.1 2864048 R 1274814 CDS YP_007381959.1 443618103 14482761 complement(2865548..2866441) 1 NC_020163.1 COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 2866441 14482761 APECO78_13940 Escherichia coli APEC O78 UTP-glucose-1-phosphate uridylyltransferase YP_007381959.1 2865548 R 1274814 CDS YP_007381960.1 443618104 14482762 complement(2866616..2868010) 1 NC_020163.1 colanic acid biosynthesis protein 2868010 wcaM 14482762 wcaM Escherichia coli APEC O78 colanic acid biosynthesis protein YP_007381960.1 2866616 R 1274814 CDS YP_007381961.1 443618105 14482763 complement(2868021..2869241) 1 NC_020163.1 COG0438 Glycosyltransferase; colanic acid biosynthesis glycosyltransferase WcaL 2869241 14482763 APECO78_13950 Escherichia coli APEC O78 colanic acid biosynthesis glycosyltransferase WcaL YP_007381961.1 2868021 R 1274814 CDS YP_007381962.1 443618106 14482764 complement(2869238..2870518) 1 NC_020163.1 COG2327 Uncharacterized conserved protein; colanic acid biosynthesis protein 2870518 14482764 APECO78_13955 Escherichia coli APEC O78 colanic acid biosynthesis protein YP_007381962.1 2869238 R 1274814 CDS YP_007381963.1 443618107 14482765 complement(2871084..2872562) 1 NC_020163.1 COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; colanic acid exporter 2872562 14482765 APECO78_13960 Escherichia coli APEC O78 colanic acid exporter YP_007381963.1 2871084 R 1274814 CDS YP_007381964.1 443618108 14482766 complement(2872564..2873958) 1 NC_020163.1 COG2148 Sugar transferases involved in lipopolysaccharide synthesis; UDP-glucose lipid carrier transferase 2873958 14482766 APECO78_13965 Escherichia coli APEC O78 UDP-glucose lipid carrier transferase YP_007381964.1 2872564 R 1274814 CDS YP_007381965.1 443618109 14482767 complement(2874013..2875383) 1 NC_020163.1 COG1109 Phosphomannomutase; phosphomannomutase CpsG 2875383 14482767 APECO78_13970 Escherichia coli APEC O78 phosphomannomutase CpsG YP_007381965.1 2874013 R 1274814 CDS YP_007381966.1 443618110 14482768 complement(2875576..2877012) 1 NC_020163.1 COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanyltransferase 2877012 cpsB 14482768 cpsB Escherichia coli APEC O78 mannose-1-phosphate guanyltransferase YP_007381966.1 2875576 R 1274814 CDS YP_007381967.1 443618111 14482769 complement(2877015..2878238) 1 NC_020163.1 COG0438 Glycosyltransferase; glycosyl transferase 2878238 14482769 APECO78_13980 Escherichia coli APEC O78 glycosyl transferase YP_007381967.1 2877015 R 1274814 CDS YP_007381968.1 443618112 14482770 complement(2878235..2878714) 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; GDP-mannose mannosyl hydrolase NudD 2878714 14482770 APECO78_13985 Escherichia coli APEC O78 GDP-mannose mannosyl hydrolase NudD YP_007381968.1 2878235 R 1274814 CDS YP_007381969.1 443618113 14482771 complement(2878717..2879682) 1 NC_020163.1 COG0451 Nucleoside-diphosphate-sugar epimerases; GDP-fucose synthetase 2879682 14482771 APECO78_13990 Escherichia coli APEC O78 GDP-fucose synthetase YP_007381969.1 2878717 R 1274814 CDS YP_007381970.1 443618114 14482772 complement(2879685..2880806) 1 NC_020163.1 COG1089 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase 2880806 14482772 APECO78_13995 Escherichia coli APEC O78 GDP-mannose 4,6-dehydratase YP_007381970.1 2879685 R 1274814 CDS YP_007381971.1 443618115 14482773 complement(2880832..2881380) 1 NC_020163.1 COG0110 Acetyltransferase (isoleucine patch superfamily); acyl transferase 2881380 14482773 APECO78_14000 Escherichia coli APEC O78 acyl transferase YP_007381971.1 2880832 R 1274814 CDS YP_007381972.1 443618116 14482774 complement(2881396..2882142) 1 NC_020163.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; colanic acid biosynthesis glycosyl transferase 2882142 14482774 APECO78_14005 Escherichia coli APEC O78 colanic acid biosynthesis glycosyl transferase YP_007381972.1 2881396 R 1274814 CDS YP_007381973.1 443618117 14482775 complement(2882153..2883370) 1 NC_020163.1 putative colanic acid biosynthesis protein 2883370 14482775 APECO78_14010 Escherichia coli APEC O78 putative colanic acid biosynthesis protein YP_007381973.1 2882153 R 1274814 CDS YP_007381974.1 443618118 14482776 complement(2883345..2884562) 1 NC_020163.1 COG0438 Glycosyltransferase; glycosyl transferase 2884562 14482776 APECO78_14015 Escherichia coli APEC O78 glycosyl transferase YP_007381974.1 2883345 R 1274814 CDS YP_007381975.1 443618119 14482777 complement(2884559..2885047) 1 NC_020163.1 COG1045 Serine acetyltransferase; putative colanic acid biosynthesis acetyltransferase WcaB 2885047 14482777 APECO78_14020 Escherichia coli APEC O78 putative colanic acid biosynthesis acetyltransferase WcaB YP_007381975.1 2884559 R 1274814 CDS YP_007381976.1 443618120 14482778 complement(2885050..2885889) 1 NC_020163.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase 2885889 14482778 APECO78_14025 Escherichia coli APEC O78 glycosyl transferase YP_007381976.1 2885050 R 1274814 CDS YP_007381977.1 443618121 14482779 complement(2886067..2888229) 1 NC_020163.1 COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; tyrosine kinase 2888229 14482779 APECO78_14030 Escherichia coli APEC O78 tyrosine kinase YP_007381977.1 2886067 R 1274814 CDS YP_007381978.1 443618122 14482780 complement(2888232..2888675) 1 NC_020163.1 COG0394 Protein-tyrosine-phosphatase; tyrosine phosphatase 2888675 14482780 APECO78_14035 Escherichia coli APEC O78 tyrosine phosphatase YP_007381978.1 2888232 R 1274814 CDS YP_007381979.1 443618123 14482781 complement(2888681..2889820) 1 NC_020163.1 COG1596 Periplasmic protein involved in polysaccharide export; polysaccharide export protein Wza 2889820 14482781 APECO78_14040 Escherichia coli APEC O78 polysaccharide export protein Wza YP_007381979.1 2888681 R 1274814 CDS YP_007381980.1 443618124 14482782 2890479..2892062 1 NC_020163.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; putative transport protein 2892062 14482782 APECO78_14045 Escherichia coli APEC O78 putative transport protein YP_007381980.1 2890479 D 1274814 CDS YP_007381981.1 443618125 14482783 complement(2892336..2894189) 1 NC_020163.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis; assembly protein 2894189 14482783 APECO78_14050 Escherichia coli APEC O78 assembly protein YP_007381981.1 2892336 R 1274814 CDS YP_007381982.1 443618126 14482784 complement(2894211..2894792) 1 NC_020163.1 COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase 2894792 dcd 14482784 dcd Escherichia coli APEC O78 deoxycytidine triphosphate deaminase YP_007381982.1 2894211 R 1274814 CDS YP_007381983.1 443618127 14482785 complement(2894884..2895525) 1 NC_020163.1 COG0572 Uridine kinase; Uridine/cytidine kinase 2895525 14482785 APECO78_14060 Escherichia coli APEC O78 Uridine/cytidine kinase YP_007381983.1 2894884 R 1274814 CDS YP_007381984.1 443618128 14482786 2895843..2899160 1 NC_020163.1 COG2202 FOG: PAS/PAC domain; diguanylate cyclase 2899160 14482786 APECO78_14065 Escherichia coli APEC O78 diguanylate cyclase YP_007381984.1 2895843 D 1274814 CDS YP_007381985.1 443618129 14482787 complement(2899199..2900056) 1 NC_020163.1 COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; 3-methyl-adenine DNA glycosylase II 2900056 14482787 APECO78_14070 Escherichia coli APEC O78 3-methyl-adenine DNA glycosylase II YP_007381985.1 2899199 R 1274814 CDS YP_007381986.1 443618130 14482788 2900190..2901542 1 NC_020163.1 COG0443 Molecular chaperone; chaperone 2901542 14482788 APECO78_14075 Escherichia coli APEC O78 chaperone YP_007381986.1 2900190 D 1274814 CDS YP_007381987.1 443618131 14482789 complement(2901554..2903500) 1 NC_020163.1 COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains; hypothetical protein 2903500 14482789 APECO78_14080 Escherichia coli APEC O78 hypothetical protein YP_007381987.1 2901554 R 1274814 CDS YP_007381988.1 443618132 14482790 2903698..2904159 1 NC_020163.1 COG3779 Uncharacterized protein conserved in bacteria; hypothetical protein 2904159 14482790 APECO78_14085 Escherichia coli APEC O78 hypothetical protein YP_007381988.1 2903698 D 1274814 CDS YP_007381989.1 443618133 14482791 complement(2904224..2904985) 1 NC_020163.1 hypothetical protein 2904985 14482791 APECO78_14090 Escherichia coli APEC O78 hypothetical protein YP_007381989.1 2904224 R 1274814 CDS YP_007381990.1 443618134 14482792 complement(2904982..2905641) 1 NC_020163.1 COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain; von Willebrand factor type A 2905641 14482792 APECO78_14095 Escherichia coli APEC O78 von Willebrand factor type A YP_007381990.1 2904982 R 1274814 CDS YP_007381991.1 443618135 14482793 2906857..2908104 1 NC_020163.1 COG0845 Membrane-fusion protein; multidrug efflux system subunit MdtA 2908104 14482793 APECO78_14100 Escherichia coli APEC O78 multidrug efflux system subunit MdtA YP_007381991.1 2906857 D 1274814 CDS YP_007381992.1 443618136 14482794 2908104..2911226 1 NC_020163.1 COG0841 Cation/multidrug efflux pump; multidrug efflux system subunit MdtB 2911226 14482794 APECO78_14105 Escherichia coli APEC O78 multidrug efflux system subunit MdtB YP_007381992.1 2908104 D 1274814 CDS YP_007381993.1 443618137 14482795 2911227..2914304 1 NC_020163.1 COG0841 Cation/multidrug efflux pump; multidrug efflux system, subunit C 2914304 14482795 APECO78_14110 Escherichia coli APEC O78 multidrug efflux system, subunit C YP_007381993.1 2911227 D 1274814 CDS YP_007381994.1 443618138 14482796 2914305..2915720 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 2915720 14482796 APECO78_14115 Escherichia coli APEC O78 transporter YP_007381994.1 2914305 D 1274814 CDS YP_007381995.1 443618139 14482797 2915717..2917120 1 NC_020163.1 COG0642 Signal transduction histidine kinase; signal transduction histidine-protein kinase BaeS 2917120 14482797 APECO78_14120 Escherichia coli APEC O78 signal transduction histidine-protein kinase BaeS YP_007381995.1 2915717 D 1274814 CDS YP_007381996.1 443618140 14482798 2917117..2917839 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator BaeR 2917839 14482798 APECO78_14125 Escherichia coli APEC O78 DNA-binding transcriptional regulator BaeR YP_007381996.1 2917117 D 1274814 CDS YP_007381997.1 443618141 14482799 2918030..2918362 1 NC_020163.1 COG3422 Uncharacterized conserved protein; hypothetical protein 2918362 14482799 APECO78_14130 Escherichia coli APEC O78 hypothetical protein YP_007381997.1 2918030 D 1274814 CDS YP_007381998.1 443618142 14482800 2918571..2918867 1 NC_020163.1 COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; transcriptional regulator 2918867 14482800 APECO78_14135 Escherichia coli APEC O78 transcriptional regulator YP_007381998.1 2918571 D 1274814 CDS YP_007381999.1 443618143 14482801 2918869..2919165 1 NC_020163.1 COG3668 Plasmid stabilization system protein; plasmid stabilization system protein 2919165 14482801 APECO78_14140 Escherichia coli APEC O78 plasmid stabilization system protein YP_007381999.1 2918869 D 1274814 CDS YP_007382000.1 443618144 14482802 2919268..2920629 1 NC_020163.1 COG0826 Collagenase and related proteases; protease 2920629 14482802 APECO78_14145 Escherichia coli APEC O78 protease YP_007382000.1 2919268 D 1274814 CDS YP_007382001.1 443618145 14482803 complement(2920960..2921277) 1 NC_020163.1 hypothetical protein 2921277 14482803 APECO78_14150 Escherichia coli APEC O78 hypothetical protein YP_007382001.1 2920960 R 1274814 CDS YP_007382002.1 443618146 14482804 2921683..2922582 1 NC_020163.1 COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; lipid kinase 2922582 14482804 APECO78_14155 Escherichia coli APEC O78 lipid kinase YP_007382002.1 2921683 D 1274814 CDS YP_007382003.1 443618147 14482805 complement(2922664..2923437) 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; galactitol utilization operon repressor 2923437 14482805 APECO78_14160 Escherichia coli APEC O78 galactitol utilization operon repressor YP_007382003.1 2922664 R 1274814 CDS YP_007382004.1 443618148 14482806 complement(2923543..2924583) 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; galactitol-1-phosphate dehydrogenase 2924583 14482806 APECO78_14165 Escherichia coli APEC O78 galactitol-1-phosphate dehydrogenase YP_007382004.1 2923543 R 1274814 CDS YP_007382005.1 443618149 14482807 complement(2924631..2925986) 1 NC_020163.1 COG3775 Phosphotransferase system, galactitol-specific IIC component; PTS system galactitol-specific enzyme IIC 2925986 14482807 APECO78_14170 Escherichia coli APEC O78 PTS system galactitol-specific enzyme IIC YP_007382005.1 2924631 R 1274814 CDS YP_007382006.1 443618150 14482808 complement(2925990..2926274) 1 NC_020163.1 COG3414 Phosphotransferase system, galactitol-specific IIB component; PTS system galactitol-specific transporter subunit IIB 2926274 14482808 APECO78_14175 Escherichia coli APEC O78 PTS system galactitol-specific transporter subunit IIB YP_007382006.1 2925990 R 1274814 CDS YP_007382007.1 443618151 14482809 complement(2926305..2926757) 1 NC_020163.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system galactitol-specific transporter subunit IIA 2926757 14482809 APECO78_14180 Escherichia coli APEC O78 PTS system galactitol-specific transporter subunit IIA YP_007382007.1 2926305 R 1274814 CDS YP_007382008.1 443618152 14482810 complement(2926767..2928029) 1 NC_020163.1 COG4573 Predicted tagatose 6-phosphate kinase; D-tagatose-1,6-bisphosphate aldolase subunit GatZ 2928029 14482810 APECO78_14185 Escherichia coli APEC O78 D-tagatose-1,6-bisphosphate aldolase subunit GatZ YP_007382008.1 2926767 R 1274814 CDS YP_007382009.1 443618153 14482811 complement(2928058..2928912) 1 NC_020163.1 COG0191 Fructose/tagatose bisphosphate aldolase; tagatose-bisphosphate aldolase 2928912 gatY 14482811 gatY Escherichia coli APEC O78 tagatose-bisphosphate aldolase YP_007382009.1 2928058 R 1274814 CDS YP_007382010.1 443618154 14482812 complement(2929222..2930274) 1 NC_020163.1 COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes; fructose-bisphosphate aldolase 2930274 14482812 APECO78_14195 Escherichia coli APEC O78 fructose-bisphosphate aldolase YP_007382010.1 2929222 R 1274814 CDS YP_007382011.1 443618155 14482813 2930531..2931808 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative nucleoside transporter 2931808 14482813 APECO78_14200 Escherichia coli APEC O78 putative nucleoside transporter YP_007382011.1 2930531 D 1274814 CDS YP_007382012.1 443618156 14482814 2931805..2932809 1 NC_020163.1 COG1397 ADP-ribosylglycohydrolase; putative hydrolase 2932809 14482814 APECO78_14205 Escherichia coli APEC O78 putative hydrolase YP_007382012.1 2931805 D 1274814 CDS YP_007382013.1 443618157 14482815 2932806..2933771 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; putative kinase 2933771 14482815 APECO78_14210 Escherichia coli APEC O78 putative kinase YP_007382013.1 2932806 D 1274814 CDS YP_007382014.1 443618158 14482816 complement(2933745..2934491) 1 NC_020163.1 COG2188 Transcriptional regulators; GntR family transcriptional regulator 2934491 14482816 APECO78_14215 Escherichia coli APEC O78 GntR family transcriptional regulator YP_007382014.1 2933745 R 1274814 CDS YP_007382015.1 443618159 14482817 complement(2934543..2935079) 1 NC_020163.1 COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); hydrolase 2935079 14482817 APECO78_14220 Escherichia coli APEC O78 hydrolase YP_007382015.1 2934543 R 1274814 CDS YP_007382016.1 443618160 14482818 complement(2935063..2935365) 1 NC_020163.1 COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); putative hydrolase 2935365 14482818 APECO78_14225 Escherichia coli APEC O78 putative hydrolase YP_007382016.1 2935063 R 1274814 CDS YP_007382017.1 443618161 14482819 complement(2935430..2936230) 1 NC_020163.1 COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase 2936230 14482819 APECO78_14230 Escherichia coli APEC O78 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase YP_007382017.1 2935430 R 1274814 CDS YP_007382018.1 443618162 14482820 complement(2936227..2937015) 1 NC_020163.1 COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase 2937015 14482820 APECO78_14235 Escherichia coli APEC O78 hydroxyethylthiazole kinase YP_007382018.1 2936227 R 1274814 CDS YP_007382019.1 443618163 14482821 complement(2937238..2937510) 1 NC_020163.1 COG1937 Uncharacterized protein conserved in bacteria; transcriptional repressor RcnR to maintain nickel and cobalt homeostasis 2937510 14482821 APECO78_14240 Escherichia coli APEC O78 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis YP_007382019.1 2937238 R 1274814 CDS YP_007382020.1 443618164 14482822 2937631..2938455 1 NC_020163.1 COG2215 ABC-type uncharacterized transport system, permease component; nickel/cobalt efflux protein RcnA 2938455 14482822 APECO78_14245 Escherichia coli APEC O78 nickel/cobalt efflux protein RcnA YP_007382020.1 2937631 D 1274814 CDS YP_007382021.1 443618165 14482823 2938674..2939012 1 NC_020163.1 COG5455 Predicted integral membrane protein; hypothetical protein 2939012 14482823 APECO78_14250 Escherichia coli APEC O78 hypothetical protein YP_007382021.1 2938674 D 1274814 CDS YP_007382022.1 443618166 14482824 complement(2939094..2940128) 1 NC_020163.1 fimbrial-like adhesin protein StcD 2940128 14482824 APECO78_14255 Escherichia coli APEC O78 fimbrial-like adhesin protein StcD YP_007382022.1 2939094 R 1274814 CDS YP_007382023.1 443618167 14482825 complement(2940144..2942624) 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein 2942624 14482825 APECO78_14260 Escherichia coli APEC O78 fimbrial outer membrane usher protein YP_007382023.1 2940144 R 1274814 CDS YP_007382024.1 443618168 14482826 complement(2942640..2943314) 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; putative chaperone 2943314 14482826 APECO78_14265 Escherichia coli APEC O78 putative chaperone YP_007382024.1 2942640 R 1274814 CDS YP_007382025.1 443618169 14482827 complement(2943394..2943936) 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial-like protein 2943936 14482827 APECO78_14270 Escherichia coli APEC O78 fimbrial-like protein YP_007382025.1 2943394 R 1274814 CDS YP_007382026.1 443618170 14482828 complement(2944229..2944510) 1 NC_020163.1 hypothetical protein 2944510 14482828 APECO78_14275 Escherichia coli APEC O78 hypothetical protein YP_007382026.1 2944229 R 1274814 CDS YP_007382027.1 443618171 14482829 complement(2944773..2945882) 1 NC_020163.1 COG0489 ATPases involved in chromosome partitioning; antiporter inner membrane protein 2945882 14482829 APECO78_14280 Escherichia coli APEC O78 antiporter inner membrane protein YP_007382027.1 2944773 R 1274814 CDS YP_007382028.1 443618172 14482830 2946014..2948047 1 NC_020163.1 COG0143 Methionyl-tRNA synthetase; methionyl-tRNA ligase 2948047 metG 14482830 metG Escherichia coli APEC O78 methionyl-tRNA ligase YP_007382028.1 2946014 D 1274814 CDS YP_007382029.1 443618173 14482831 2948188..2951982 1 NC_020163.1 COG3831 Uncharacterized conserved protein; hypothetical protein 2951982 14482831 APECO78_14290 Escherichia coli APEC O78 hypothetical protein YP_007382029.1 2948188 D 1274814 CDS YP_007382030.1 443618174 14482832 2956309..2957397 1 NC_020163.1 COG0714 MoxR-like ATPases; transporter subunit 2957397 14482832 APECO78_14305 Escherichia coli APEC O78 transporter subunit YP_007382030.1 2956309 D 1274814 CDS YP_007382031.1 443618175 14482833 2957408..2959687 1 NC_020163.1 hypothetical protein 2959687 14482833 APECO78_14310 Escherichia coli APEC O78 hypothetical protein YP_007382031.1 2957408 D 1274814 CDS YP_007382032.1 443618176 14482834 2959680..2960816 1 NC_020163.1 hypothetical protein 2960816 14482834 APECO78_14315 Escherichia coli APEC O78 hypothetical protein YP_007382032.1 2959680 D 1274814 CDS YP_007382033.1 443618177 14482835 2960813..2962813 1 NC_020163.1 hypothetical protein 2962813 14482835 APECO78_14320 Escherichia coli APEC O78 hypothetical protein YP_007382033.1 2960813 D 1274814 CDS YP_007382034.1 443618178 14482836 2962938..2963399 1 NC_020163.1 COG4808 Uncharacterized protein conserved in bacteria; hypothetical protein 2963399 14482836 APECO78_14325 Escherichia coli APEC O78 hypothetical protein YP_007382034.1 2962938 D 1274814 CDS YP_007382035.1 443618179 14482837 complement(2963440..2963910) 1 NC_020163.1 COG4807 Uncharacterized protein conserved in bacteria; hypothetical protein 2963910 14482837 APECO78_14330 Escherichia coli APEC O78 hypothetical protein YP_007382035.1 2963440 R 1274814 CDS YP_007382036.1 443618180 14482838 complement(2963957..2964676) 1 NC_020163.1 COG3279 Response regulator of the LytR/AlgR family; two-component response-regulatory protein YehT 2964676 14482838 APECO78_14335 Escherichia coli APEC O78 two-component response-regulatory protein YehT YP_007382036.1 2963957 R 1274814 CDS YP_007382037.1 443618181 14482839 complement(2964673..2966358) 1 NC_020163.1 COG3275 Putative regulator of cell autolysis; sensory kinase in two-component system with YehT 2966358 14482839 APECO78_14340 Escherichia coli APEC O78 sensory kinase in two-component system with YehT YP_007382037.1 2964673 R 1274814 CDS YP_007382038.1 443618182 14482840 2966580..2967311 1 NC_020163.1 COG0789 Predicted transcriptional regulators; transcriptional regulator MirA 2967311 14482840 APECO78_14345 Escherichia coli APEC O78 transcriptional regulator MirA YP_007382038.1 2966580 D 1274814 CDS YP_007382039.1 443618183 14482841 2967371..2967478 1 NC_020163.1 hypothetical protein 2967478 14482841 APECO78_14350 Escherichia coli APEC O78 hypothetical protein YP_007382039.1 2967371 D 1274814 CDS YP_007382040.1 443618184 14482842 complement(2967459..2968190) 1 NC_020163.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component; quaternare amine family ABC transporter permease 2968190 14482842 APECO78_14355 Escherichia coli APEC O78 quaternare amine family ABC transporter permease YP_007382040.1 2967459 R 1274814 CDS YP_007382041.1 443618185 14482843 complement(2968195..2969121) 1 NC_020163.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; putative ABC transporter ATP-binding protein 2969121 14482843 APECO78_14360 Escherichia coli APEC O78 putative ABC transporter ATP-binding protein YP_007382041.1 2968195 R 1274814 CDS YP_007382042.1 443618186 14482844 complement(2969114..2970271) 1 NC_020163.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component; binding-protein-dependent transport system inner membrane protein 2970271 14482844 APECO78_14365 Escherichia coli APEC O78 binding-protein-dependent transport system inner membrane protein YP_007382042.1 2969114 R 1274814 CDS YP_007382043.1 443618187 14482845 complement(2970278..2971195) 1 NC_020163.1 COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); transporter subunit 2971195 14482845 APECO78_14370 Escherichia coli APEC O78 transporter subunit YP_007382043.1 2970278 R 1274814 CDS YP_007382044.1 443618188 14482846 complement(2971406..2973703) 1 NC_020163.1 COG1472 Beta-glucosidase-related glycosidases; beta-D-glucoside glucohydrolase 2973703 14482846 APECO78_14375 Escherichia coli APEC O78 beta-D-glucoside glucohydrolase YP_007382044.1 2971406 R 1274814 CDS YP_007382045.1 443618189 14482847 2973899..2975614 1 NC_020163.1 COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase 2975614 14482847 APECO78_14380 Escherichia coli APEC O78 D-lactate dehydrogenase YP_007382045.1 2973899 D 1274814 CDS YP_007382046.1 443618190 14482848 complement(2975652..2976584) 1 NC_020163.1 COG1686 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine endopeptidase 2976584 pbpG 14482848 pbpG Escherichia coli APEC O78 D-alanyl-D-alanine endopeptidase YP_007382046.1 2975652 R 1274814 CDS YP_007382047.1 443618191 14482849 complement(2976758..2977345) 1 NC_020163.1 inner membrane protein 2977345 14482849 APECO78_14390 Escherichia coli APEC O78 inner membrane protein YP_007382047.1 2976758 R 1274814 CDS YP_007382048.1 443618192 14482850 2977515..2978093 1 NC_020163.1 COG0586 Uncharacterized membrane-associated protein; inner membrane protein 2978093 14482850 APECO78_14395 Escherichia coli APEC O78 inner membrane protein YP_007382048.1 2977515 D 1274814 CDS YP_007382049.1 443618193 14482851 complement(2978223..2978984) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 2978984 14482851 APECO78_14400 Escherichia coli APEC O78 oxidoreductase YP_007382049.1 2978223 R 1274814 CDS YP_007382050.1 443618194 14482852 complement(2979037..2980473) 1 NC_020163.1 COG1538 Outer membrane protein; multidrug resistance outer membrane protein MdtQ 2980473 14482852 APECO78_14405 Escherichia coli APEC O78 multidrug resistance outer membrane protein MdtQ YP_007382050.1 2979037 R 1274814 CDS YP_007382051.1 443618195 14482853 2980697..2980780 1 NC_020163.1 hypothetical protein 2980780 14482853 APECO78_14410 Escherichia coli APEC O78 hypothetical protein YP_007382051.1 2980697 D 1274814 CDS YP_007382052.1 443618196 14482854 complement(2981151..2982098) 1 NC_020163.1 COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase C 2982098 14482854 APECO78_14415 Escherichia coli APEC O78 tRNA-dihydrouridine synthase C YP_007382052.1 2981151 R 1274814 CDS YP_007382053.1 443618197 14482855 2982337..2982735 1 NC_020163.1 COG1380 Putative effector of murein hydrolase LrgA; hypothetical protein 2982735 14482855 APECO78_14420 Escherichia coli APEC O78 hypothetical protein YP_007382053.1 2982337 D 1274814 CDS YP_007382054.1 443618198 14482856 2982732..2983427 1 NC_020163.1 COG1346 Putative effector of murein hydrolase; hypothetical protein 2983427 14482856 APECO78_14425 Escherichia coli APEC O78 hypothetical protein YP_007382054.1 2982732 D 1274814 CDS YP_007382055.1 443618199 14482857 2983557..2984441 1 NC_020163.1 COG0295 Cytidine deaminase; cytidine deaminase 2984441 14482857 APECO78_14430 Escherichia coli APEC O78 cytidine deaminase YP_007382055.1 2983557 D 1274814 CDS YP_007382056.1 443618200 14482858 2984591..2985310 1 NC_020163.1 COG2949 Uncharacterized membrane protein; vancomycin high temperature exclusion protein 2985310 14482858 APECO78_14435 Escherichia coli APEC O78 vancomycin high temperature exclusion protein YP_007382056.1 2984591 D 1274814 CDS YP_007382057.1 443618201 14482859 2985313..2985552 1 NC_020163.1 hypothetical protein 2985552 14482859 APECO78_14440 Escherichia coli APEC O78 hypothetical protein YP_007382057.1 2985313 D 1274814 CDS YP_007382058.1 443618202 14482860 2985871..2987109 1 NC_020163.1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; dihydropyrimidine dehydrogenase subunit A 2987109 14482860 APECO78_14445 Escherichia coli APEC O78 dihydropyrimidine dehydrogenase subunit A YP_007382058.1 2985871 D 1274814 CDS YP_007382059.1 443618203 14482861 2987103..2988338 1 NC_020163.1 COG0167 Dihydroorotate dehydrogenase; dihydropyrimidine dehydrogenase subunit B 2988338 14482861 APECO78_14450 Escherichia coli APEC O78 dihydropyrimidine dehydrogenase subunit B YP_007382059.1 2987103 D 1274814 CDS YP_007382060.1 443618204 14482862 complement(2988409..2989419) 1 NC_020163.1 COG4211 ABC-type glucose/galactose transport system, permease component; beta-methylgalactoside transporter inner membrane protein 2989419 14482862 APECO78_14455 Escherichia coli APEC O78 beta-methylgalactoside transporter inner membrane protein YP_007382060.1 2988409 R 1274814 CDS YP_007382061.1 443618205 14482863 complement(2989435..2990955) 1 NC_020163.1 COG1129 ABC-type sugar transport system, ATPase component; galactose/methyl galaxtoside transporter ATP-binding protein 2990955 14482863 APECO78_14460 Escherichia coli APEC O78 galactose/methyl galaxtoside transporter ATP-binding protein YP_007382061.1 2989435 R 1274814 CDS YP_007382062.1 443618206 14482864 complement(2991016..2992014) 1 NC_020163.1 COG1879 ABC-type sugar transport system, periplasmic component; methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB 2992014 14482864 APECO78_14465 Escherichia coli APEC O78 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB YP_007382062.1 2991016 R 1274814 CDS YP_007382063.1 443618207 14482865 complement(2992294..2993334) 1 NC_020163.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalS 2993334 14482865 APECO78_14470 Escherichia coli APEC O78 DNA-binding transcriptional regulator GalS YP_007382063.1 2992294 R 1274814 CDS YP_007382064.1 443618208 14482866 complement(2993476..2994633) 1 NC_020163.1 COG2311 Predicted membrane protein; hypothetical protein 2994633 14482866 APECO78_14475 Escherichia coli APEC O78 hypothetical protein YP_007382064.1 2993476 R 1274814 CDS YP_007382065.1 443618209 14482867 complement(2994650..2995318) 1 NC_020163.1 COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I 2995318 14482867 APECO78_14480 Escherichia coli APEC O78 GTP cyclohydrolase I YP_007382065.1 2994650 R 1274814 CDS YP_007382066.1 443618210 14482868 2995576..2996412 1 NC_020163.1 COG0627 Predicted esterase; S-formylglutathione hydrolase 2996412 14482868 APECO78_14485 Escherichia coli APEC O78 S-formylglutathione hydrolase YP_007382066.1 2995576 D 1274814 CDS YP_007382067.1 443618211 14482869 complement(2996444..2997835) 1 NC_020163.1 COG4771 Outer membrane receptor for ferrienterochelin and colicins; catecholate siderophore receptor CirA 2997835 14482869 APECO78_14490 Escherichia coli APEC O78 catecholate siderophore receptor CirA YP_007382067.1 2996444 R 1274814 CDS YP_007382068.1 443618212 14482870 complement(2997853..2998434) 1 NC_020163.1 COG4771 Outer membrane receptor for ferrienterochelin and colicins; catecholate siderophore receptor CirA 2998434 14482870 APECO78_14495 Escherichia coli APEC O78 catecholate siderophore receptor CirA YP_007382068.1 2997853 R 1274814 CDS YP_007382069.1 443618213 14482871 complement(2998728..3000197) 1 NC_020163.1 COG0833 Amino acid transporters; lysine transporter 3000197 14482871 APECO78_14500 Escherichia coli APEC O78 lysine transporter YP_007382069.1 2998728 R 1274814 CDS YP_007382070.1 443618214 14482872 complement(3000402..3001283) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 3001283 14482872 APECO78_14505 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007382070.1 3000402 R 1274814 CDS YP_007382071.1 443618215 14482873 3001382..3002431 1 NC_020163.1 COG2855 Predicted membrane protein; hypothetical protein 3002431 14482873 APECO78_14510 Escherichia coli APEC O78 hypothetical protein YP_007382071.1 3001382 D 1274814 CDS YP_007382072.1 443618216 14482874 3002505..3003362 1 NC_020163.1 COG0648 Endonuclease IV; endonuclease IV 3003362 14482874 APECO78_14515 Escherichia coli APEC O78 endonuclease IV YP_007382072.1 3002505 D 1274814 CDS YP_007382073.1 443618217 14482875 3003365..3004453 1 NC_020163.1 COG2771 DNA-binding HTH domain-containing proteins; kinase 3004453 14482875 APECO78_14520 Escherichia coli APEC O78 kinase YP_007382073.1 3003365 D 1274814 CDS YP_007382074.1 443618218 14482876 complement(3004509..3005759) 1 NC_020163.1 COG1972 Nucleoside permease; putative transport system permease 3005759 14482876 APECO78_14525 Escherichia coli APEC O78 putative transport system permease YP_007382074.1 3004509 R 1274814 CDS YP_007382075.1 443618219 14482877 complement(3005859..3006800) 1 NC_020163.1 COG1957 Inosine-uridine nucleoside N-ribohydrolase; ribonucleoside hydrolase 2 3006800 rihB 14482877 rihB Escherichia coli APEC O78 ribonucleoside hydrolase 2 YP_007382075.1 3005859 R 1274814 CDS YP_007382076.1 443618220 14482878 3006969..3007628 1 NC_020163.1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; DNA-binding transcriptional activator YeiL 3007628 14482878 APECO78_14535 Escherichia coli APEC O78 DNA-binding transcriptional activator YeiL YP_007382076.1 3006969 D 1274814 CDS YP_007382077.1 443618221 14482879 complement(3007825..3009075) 1 NC_020163.1 COG1972 Nucleoside permease; putative sodium/proton nucleoside transporter 3009075 14482879 APECO78_14540 Escherichia coli APEC O78 putative sodium/proton nucleoside transporter YP_007382077.1 3007825 R 1274814 CDS YP_007382078.1 443618222 14482880 complement(3009169..3010089) 1 NC_020163.1 COG2313 Uncharacterized enzyme involved in pigment biosynthesis; hypothetical protein 3010089 14482880 APECO78_14545 Escherichia coli APEC O78 hypothetical protein YP_007382078.1 3009169 R 1274814 CDS YP_007382079.1 443618223 14482881 complement(3010077..3011018) 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; pseudouridine kinase 3011018 14482881 APECO78_14550 Escherichia coli APEC O78 pseudouridine kinase YP_007382079.1 3010077 R 1274814 CDS YP_007382080.1 443618224 14482882 complement(3011442..3013133) 1 NC_020163.1 COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB; PTS system fructose-specific transporter subunit IIBC 3013133 14482882 APECO78_14555 Escherichia coli APEC O78 PTS system fructose-specific transporter subunit IIBC YP_007382080.1 3011442 R 1274814 CDS YP_007382081.1 443618225 14482883 complement(3013150..3014088) 1 NC_020163.1 COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 1-phosphofructokinase 3014088 14482883 APECO78_14560 Escherichia coli APEC O78 1-phosphofructokinase YP_007382081.1 3013150 R 1274814 CDS YP_007382082.1 443618226 14482884 complement(3014088..3015218) 1 NC_020163.1 COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 3015218 14482884 APECO78_14565 Escherichia coli APEC O78 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_007382082.1 3014088 R 1274814 CDS YP_007382083.1 443618227 14482885 3015586..3016767 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; sugar efflux transporter B 3016767 14482885 APECO78_14570 Escherichia coli APEC O78 sugar efflux transporter B YP_007382083.1 3015586 D 1274814 CDS YP_007382084.1 443618228 14482886 complement(3016764..3017018) 1 NC_020163.1 COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 3017018 14482886 APECO78_14575 Escherichia coli APEC O78 hypothetical protein YP_007382084.1 3016764 R 1274814 CDS YP_007382085.1 443618229 14482887 3017173..3017745 1 NC_020163.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 3017745 14482887 APECO78_14580 Escherichia coli APEC O78 elongation factor P YP_007382085.1 3017173 D 1274814 CDS YP_007382086.1 443618230 14482888 3017968..3019434 1 NC_020163.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; putative oxidoreductase 3019434 14482888 APECO78_14585 Escherichia coli APEC O78 putative oxidoreductase YP_007382086.1 3017968 D 1274814 CDS YP_007382087.1 443618231 14482889 3019552..3020538 1 NC_020163.1 COG0523 Putative GTPases (G3E family); hypothetical protein 3020538 14482889 APECO78_14590 Escherichia coli APEC O78 hypothetical protein YP_007382087.1 3019552 D 1274814 CDS YP_007382088.1 443618232 14482890 3020577..3021290 1 NC_020163.1 COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 3021290 14482890 APECO78_14595 Escherichia coli APEC O78 hypothetical protein YP_007382088.1 3020577 D 1274814 CDS YP_007382089.1 443618233 14482891 3021702..3022268 1 NC_020163.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); putative outer membrane lipoprotein 3022268 14482891 APECO78_14600 Escherichia coli APEC O78 putative outer membrane lipoprotein YP_007382089.1 3021702 D 1274814 CDS YP_007382090.1 443618234 14482892 3022449..3024005 1 NC_020163.1 COG2200 FOG: EAL domain; phage resistance protein 3024005 14482892 APECO78_14605 Escherichia coli APEC O78 phage resistance protein YP_007382090.1 3022449 D 1274814 CDS YP_007382091.1 443618235 14482893 3024087..3025901 1 NC_020163.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; microcin C ABC transporter periplasmic binding protein YejA 3025901 14482893 APECO78_14610 Escherichia coli APEC O78 microcin C ABC transporter periplasmic binding protein YejA YP_007382091.1 3024087 D 1274814 CDS YP_007382092.1 443618236 14482894 3025902..3026996 1 NC_020163.1 COG4174 ABC-type uncharacterized transport system, permease component; putative transport system permease 3026996 14482894 APECO78_14615 Escherichia coli APEC O78 putative transport system permease YP_007382092.1 3025902 D 1274814 CDS YP_007382093.1 443618237 14482895 3026996..3028021 1 NC_020163.1 COG4239 ABC-type uncharacterized transport system, permease component; microcin C ABC transporter permease 3028021 14482895 APECO78_14620 Escherichia coli APEC O78 microcin C ABC transporter permease YP_007382093.1 3026996 D 1274814 CDS YP_007382094.1 443618238 14482896 3028023..3029612 1 NC_020163.1 COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; microcin C ABC transporter ATP-binding protein YejF 3029612 14482896 APECO78_14625 Escherichia coli APEC O78 microcin C ABC transporter ATP-binding protein YejF YP_007382094.1 3028023 D 1274814 CDS YP_007382095.1 443618239 14482897 complement(3029616..3029960) 1 NC_020163.1 hypothetical protein 3029960 14482897 APECO78_14630 Escherichia coli APEC O78 hypothetical protein YP_007382095.1 3029616 R 1274814 CDS YP_007382096.1 443618240 14482898 complement(3030293..3031483) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; bicyclomycin/multidrug efflux system 3031483 14482898 APECO78_14635 Escherichia coli APEC O78 bicyclomycin/multidrug efflux system YP_007382096.1 3030293 R 1274814 CDS YP_007382097.1 443618241 14482899 complement(3031511..3032206) 1 NC_020163.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; 16S rRNA pseudouridylate synthase A 3032206 14482899 APECO78_14640 Escherichia coli APEC O78 16S rRNA pseudouridylate synthase A YP_007382097.1 3031511 R 1274814 CDS YP_007382098.1 443618242 14482900 3032356..3034116 1 NC_020163.1 COG1061 DNA or RNA helicases of superfamily II; putative ATP-dependent helicase 3034116 14482900 APECO78_14645 Escherichia coli APEC O78 putative ATP-dependent helicase YP_007382098.1 3032356 D 1274814 CDS YP_007382099.1 443618243 14482901 3034241..3034525 1 NC_020163.1 COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25 3034525 14482901 APECO78_14650 Escherichia coli APEC O78 50S ribosomal protein L25 YP_007382099.1 3034241 D 1274814 CDS YP_007382100.1 443618244 14482902 complement(3034664..3035671) 1 NC_020163.1 COG3081 Nucleoid-associated protein; nucleoid-associated protein NdpA 3035671 14482902 APECO78_14655 Escherichia coli APEC O78 nucleoid-associated protein NdpA YP_007382100.1 3034664 R 1274814 CDS YP_007382101.1 443618245 14482903 3035853..3036080 1 NC_020163.1 COG3082 Uncharacterized protein conserved in bacteria; hypothetical protein 3036080 14482903 APECO78_14660 Escherichia coli APEC O78 hypothetical protein YP_007382101.1 3035853 D 1274814 CDS YP_007382102.1 443618246 14482904 3036100..3037860 1 NC_020163.1 COG3083 Predicted hydrolase of alkaline phosphatase superfamily; putative sulfatase 3037860 14482904 APECO78_14665 Escherichia coli APEC O78 putative sulfatase YP_007382102.1 3036100 D 1274814 CDS YP_007382103.1 443618247 14484629 3038294..3038431 1 NC_020163.1 putative protein from DinI-like family 3038431 14484629 APECO78_14670 Escherichia coli APEC O78 putative protein from DinI-like family YP_007382103.1 3038294 D 1274814 CDS YP_007382104.1 443618248 14482906 3038785..3039150 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 3039150 14482906 APECO78_14675 Escherichia coli APEC O78 IS2 repressor TnpA YP_007382104.1 3038785 D 1274814 CDS YP_007382105.1 443618249 14482907 3039108..3040013 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 3040013 14482907 APECO78_14680 Escherichia coli APEC O78 IS2 transposase TnpB YP_007382105.1 3039108 D 1274814 CDS YP_007382106.1 443618250 14482908 3040191..3042080 1 NC_020163.1 COG1479 Uncharacterized conserved protein; hypothetical protein 3042080 14482908 APECO78_14685 Escherichia coli APEC O78 hypothetical protein YP_007382106.1 3040191 D 1274814 CDS YP_007382107.1 443618251 14482909 complement(3042176..3042304) 1 NC_020163.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; DNA invertase 3042304 14482909 APECO78_14690 Escherichia coli APEC O78 DNA invertase YP_007382107.1 3042176 R 1274814 CDS YP_007382108.1 443618252 14482910 3042745..3043185 1 NC_020163.1 hypothetical protein 3043185 14482910 APECO78_14695 Escherichia coli APEC O78 hypothetical protein YP_007382108.1 3042745 D 1274814 CDS YP_007382109.1 443618253 14482911 complement(3043157..3043567) 1 NC_020163.1 putative phage tail fiber assembly protein 3043567 14482911 APECO78_14700 Escherichia coli APEC O78 putative phage tail fiber assembly protein YP_007382109.1 3043157 R 1274814 CDS YP_007382110.1 443618254 14482912 complement(3043567..3043794) 1 NC_020163.1 hypothetical protein 3043794 14482912 APECO78_14705 Escherichia coli APEC O78 hypothetical protein YP_007382110.1 3043567 R 1274814 CDS YP_007382111.1 443618255 14482913 3043900..3044310 1 NC_020163.1 hypothetical protein 3044310 14482913 APECO78_14710 Escherichia coli APEC O78 hypothetical protein YP_007382111.1 3043900 D 1274814 CDS YP_007382112.1 443618256 14482914 complement(3044492..3044761) 1 NC_020163.1 hypothetical protein 3044761 14482914 APECO78_14715 Escherichia coli APEC O78 hypothetical protein YP_007382112.1 3044492 R 1274814 CDS YP_007382113.1 443618257 14482915 complement(3044769..3045383) 1 NC_020163.1 COG3179 Predicted chitinase; phage encoded lysozyme 3045383 14482915 APECO78_14720 Escherichia coli APEC O78 phage encoded lysozyme YP_007382113.1 3044769 R 1274814 CDS YP_007382114.1 443618258 14482916 complement(3045383..3045664) 1 NC_020163.1 phage membrane protein 3045664 14482916 APECO78_14725 Escherichia coli APEC O78 phage membrane protein YP_007382114.1 3045383 R 1274814 CDS YP_007382115.1 443618259 14482917 complement(3045651..3046037) 1 NC_020163.1 phage membrane protein 3046037 14482917 APECO78_14730 Escherichia coli APEC O78 phage membrane protein YP_007382115.1 3045651 R 1274814 CDS YP_007382116.1 443618260 14482918 complement(3046146..3046796) 1 NC_020163.1 hypothetical protein 3046796 14482918 APECO78_14735 Escherichia coli APEC O78 hypothetical protein YP_007382116.1 3046146 R 1274814 CDS YP_007382117.1 443618261 14482919 complement(3047149..3047418) 1 NC_020163.1 hypothetical protein 3047418 14482919 APECO78_14740 Escherichia coli APEC O78 hypothetical protein YP_007382117.1 3047149 R 1274814 CDS YP_007382118.1 443618262 14482920 complement(3047925..3048305) 1 NC_020163.1 putative phage AdoMet-dependent methyltransferase 3048305 14482920 APECO78_14745 Escherichia coli APEC O78 putative phage AdoMet-dependent methyltransferase YP_007382118.1 3047925 R 1274814 CDS YP_007382119.1 443618263 14482921 3048810..3049172 1 NC_020163.1 hypothetical protein 3049172 14482921 APECO78_14750 Escherichia coli APEC O78 hypothetical protein YP_007382119.1 3048810 D 1274814 CDS YP_007382120.1 443618264 14482922 3049238..3050062 1 NC_020163.1 COG5532 Uncharacterized conserved protein; hypothetical protein 3050062 14482922 APECO78_14755 Escherichia coli APEC O78 hypothetical protein YP_007382120.1 3049238 D 1274814 CDS YP_007382121.1 443618265 14482923 3050190..3050726 1 NC_020163.1 COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 3050726 14482923 APECO78_14760 Escherichia coli APEC O78 hypothetical protein YP_007382121.1 3050190 D 1274814 CDS YP_007382122.1 443618266 14482924 3050717..3051079 1 NC_020163.1 hypothetical protein 3051079 14482924 APECO78_14765 Escherichia coli APEC O78 hypothetical protein YP_007382122.1 3050717 D 1274814 CDS YP_007382123.1 443618267 14482925 3051355..3051564 1 NC_020163.1 hypothetical protein 3051564 14482925 APECO78_14770 Escherichia coli APEC O78 hypothetical protein YP_007382123.1 3051355 D 1274814 CDS YP_007382124.1 443618268 14482926 3051567..3052769 1 NC_020163.1 COG0582 Integrase; hypothetical protein 3052769 14482926 APECO78_14775 Escherichia coli APEC O78 hypothetical protein YP_007382124.1 3051567 D 1274814 CDS YP_007382125.1 443618269 14482927 complement(3052753..3053604) 1 NC_020163.1 hypothetical protein 3053604 14482927 APECO78_14780 Escherichia coli APEC O78 hypothetical protein YP_007382125.1 3052753 R 1274814 CDS YP_007382126.1 443618270 14482928 complement(3053609..3053809) 1 NC_020163.1 hypothetical protein 3053809 14482928 APECO78_14785 Escherichia coli APEC O78 hypothetical protein YP_007382126.1 3053609 R 1274814 CDS YP_007382127.1 443618271 14484630 complement(3054200..3056488) 1 NC_020163.1 COG3468 Type V secretory pathway, adhesin AidA; outer membrane autotransporter 3056488 14484630 APECO78_14790 Escherichia coli APEC O78 outer membrane autotransporter YP_007382127.1 3054200 R 1274814 CDS YP_007382128.1 443618272 14482930 3056889..3057536 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator NarP 3057536 14482930 APECO78_14795 Escherichia coli APEC O78 transcriptional regulator NarP YP_007382128.1 3056889 D 1274814 CDS YP_007382129.1 443618273 14482931 complement(3057571..3058623) 1 NC_020163.1 COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; heme lyase subunit CcmH 3058623 14482931 APECO78_14800 Escherichia coli APEC O78 heme lyase subunit CcmH YP_007382129.1 3057571 R 1274814 CDS YP_007382130.1 443618274 14482932 complement(3058620..3059177) 1 NC_020163.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein DsbE 3059177 14482932 APECO78_14805 Escherichia coli APEC O78 thiol:disulfide interchange protein DsbE YP_007382130.1 3058620 R 1274814 CDS YP_007382131.1 443618275 14482933 complement(3059174..3061117) 1 NC_020163.1 COG1138 Cytochrome c biogenesis factor; heme lyase subunit CcmF 3061117 14482933 APECO78_14810 Escherichia coli APEC O78 heme lyase subunit CcmF YP_007382131.1 3059174 R 1274814 CDS YP_007382132.1 443618276 14482934 complement(3061114..3061593) 1 NC_020163.1 COG2332 Cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE 3061593 14482934 APECO78_14815 Escherichia coli APEC O78 cytochrome c-type biogenesis protein CcmE YP_007382132.1 3061114 R 1274814 CDS YP_007382133.1 443618277 14482935 complement(3061590..3061799) 1 NC_020163.1 COG3114 Heme exporter protein D; cytochrome c biogenesis protein CcmD 3061799 14482935 APECO78_14820 Escherichia coli APEC O78 cytochrome c biogenesis protein CcmD YP_007382133.1 3061590 R 1274814 CDS YP_007382134.1 443618278 14482936 complement(3061796..3062533) 1 NC_020163.1 COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme exporter protein C 3062533 14482936 APECO78_14825 Escherichia coli APEC O78 heme exporter protein C YP_007382134.1 3061796 R 1274814 CDS YP_007382135.1 443618279 14482937 complement(3062575..3063237) 1 NC_020163.1 COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component; Heme exporter protein B 3063237 14482937 APECO78_14830 Escherichia coli APEC O78 Heme exporter protein B YP_007382135.1 3062575 R 1274814 CDS YP_007382136.1 443618280 14482938 complement(3063234..3063851) 1 NC_020163.1 COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component; cytochrome c biogenesis protein CcmA 3063851 14482938 APECO78_14835 Escherichia coli APEC O78 cytochrome c biogenesis protein CcmA YP_007382136.1 3063234 R 1274814 CDS YP_007382137.1 443618281 14482939 complement(3063870..3064472) 1 NC_020163.1 COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; cytochrome c-type protein NapC 3064472 14482939 APECO78_14840 Escherichia coli APEC O78 cytochrome c-type protein NapC YP_007382137.1 3063870 R 1274814 CDS YP_007382138.1 443618282 14482940 complement(3064482..3064931) 1 NC_020163.1 COG3043 Nitrate reductase cytochrome c-type subunit; citrate reductase cytochrome c-type subunit 3064931 14482940 APECO78_14845 Escherichia coli APEC O78 citrate reductase cytochrome c-type subunit YP_007382138.1 3064482 R 1274814 CDS YP_007382139.1 443618283 14482941 complement(3064928..3065791) 1 NC_020163.1 COG0348 Polyferredoxin; quinol dehydrogenase membrane component 3065791 14482941 APECO78_14850 Escherichia coli APEC O78 quinol dehydrogenase membrane component YP_007382139.1 3064928 R 1274814 CDS YP_007382140.1 443618284 14482942 complement(3065778..3066473) 1 NC_020163.1 COG1145 Ferredoxin; ferredoxin-type protein 3066473 14482942 APECO78_14855 Escherichia coli APEC O78 ferredoxin-type protein YP_007382140.1 3065778 R 1274814 CDS YP_007382141.1 443618285 14482943 complement(3066480..3068966) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; nitrate reductase catalytic subunit 3068966 14482943 APECO78_14860 Escherichia coli APEC O78 nitrate reductase catalytic subunit YP_007382141.1 3066480 R 1274814 CDS YP_007382142.1 443618286 14482944 complement(3068963..3069226) 1 NC_020163.1 COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase; assembly protein for periplasmic nitrate reductase 3069226 14482944 APECO78_14865 Escherichia coli APEC O78 assembly protein for periplasmic nitrate reductase YP_007382142.1 3068963 R 1274814 CDS YP_007382143.1 443618287 14482945 complement(3069216..3069710) 1 NC_020163.1 COG1145 Ferredoxin; ferredoxin-type protein 3069710 14482945 APECO78_14870 Escherichia coli APEC O78 ferredoxin-type protein YP_007382143.1 3069216 R 1274814 CDS YP_007382144.1 443618288 14482946 3069810..3069983 1 NC_020163.1 COG1626 Neutral trehalase; hypothetical protein 3069983 14482946 APECO78_14875 Escherichia coli APEC O78 hypothetical protein YP_007382144.1 3069810 D 1274814 CDS YP_007382145.1 443618289 14482947 3070118..3070606 1 NC_020163.1 COG4574 Serine protease inhibitor ecotin; ecotin 3070606 14482947 APECO78_14880 Escherichia coli APEC O78 ecotin YP_007382145.1 3070118 D 1274814 CDS YP_007382146.1 443618290 14482948 complement(3070984..3072630) 1 NC_020163.1 COG0579 Predicted dehydrogenase; malate:quinone oxidoreductase 3072630 14482948 APECO78_14885 Escherichia coli APEC O78 malate:quinone oxidoreductase YP_007382146.1 3070984 R 1274814 CDS YP_007382147.1 443618291 14482949 complement(3072848..3074491) 1 NC_020163.1 COG4615 ABC-type siderophore export system, fused ATPase and permease components; ABC transporter ATP-binding protein 3074491 14482949 APECO78_14890 Escherichia coli APEC O78 ABC transporter ATP-binding protein YP_007382147.1 3072848 R 1274814 CDS YP_007382148.1 443618292 14482950 complement(3074567..3075217) 1 NC_020163.1 COG3145 Alkylated DNA repair protein; alpha-ketoglutarate-dependent dioxygenase AlkB 3075217 14482950 APECO78_14895 Escherichia coli APEC O78 alpha-ketoglutarate-dependent dioxygenase AlkB YP_007382148.1 3074567 R 1274814 CDS YP_007382149.1 443618293 14482951 complement(3075217..3076281) 1 NC_020163.1 COG2169 Adenosine deaminase; bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase 3076281 14482951 APECO78_14900 Escherichia coli APEC O78 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase YP_007382149.1 3075217 R 1274814 CDS YP_007382150.1 443618294 14482952 complement(3076355..3077410) 1 NC_020163.1 COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; thiamine biosynthesis lipoprotein ApbE 3077410 14482952 APECO78_14905 Escherichia coli APEC O78 thiamine biosynthesis lipoprotein ApbE YP_007382150.1 3076355 R 1274814 CDS YP_007382151.1 443618295 14482953 complement(3077522..3078625) 1 NC_020163.1 COG3203 Outer membrane protein (porin); outer membrane porin protein C 3078625 14482953 APECO78_14910 Escherichia coli APEC O78 outer membrane porin protein C YP_007382151.1 3077522 R 1274814 CDS YP_007382152.1 443618296 14482954 3079364..3082036 1 NC_020163.1 COG0642 Signal transduction histidine kinase; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 3082036 14482954 APECO78_14915 Escherichia coli APEC O78 phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_007382152.1 3079364 D 1274814 CDS YP_007382153.1 443618297 14482955 3082053..3082703 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; transcriptional regulator RcsB 3082703 14482955 APECO78_14920 Escherichia coli APEC O78 transcriptional regulator RcsB YP_007382153.1 3082053 D 1274814 CDS YP_007382154.1 443618298 14482956 complement(3082903..3085752) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 3085752 14482956 APECO78_14925 Escherichia coli APEC O78 hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_007382154.1 3082903 R 1274814 CDS YP_007382155.1 443618299 14482957 3085919..3087745 1 NC_020163.1 COG0642 Signal transduction histidine kinase; sensory histidine kinase AtoS 3087745 14482957 APECO78_14930 Escherichia coli APEC O78 sensory histidine kinase AtoS YP_007382155.1 3085919 D 1274814 CDS YP_007382156.1 443618300 14482958 3087742..3089127 1 NC_020163.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; acetoacetate metabolism regulatory protein AtoC 3089127 14482958 APECO78_14935 Escherichia coli APEC O78 acetoacetate metabolism regulatory protein AtoC YP_007382156.1 3087742 D 1274814 CDS YP_007382157.1 443618301 14482959 3089323..3089985 1 NC_020163.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; acetyl-CoA:acetoacetyl-CoA transferase alpha subunit 3089985 14482959 APECO78_14940 Escherichia coli APEC O78 acetyl-CoA:acetoacetyl-CoA transferase alpha subunit YP_007382157.1 3089323 D 1274814 CDS YP_007382158.1 443618302 14482960 3089985..3090635 1 NC_020163.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; acetyl-CoA:acetoacetyl-CoA transferase subunit beta 3090635 14482960 APECO78_14945 Escherichia coli APEC O78 acetyl-CoA:acetoacetyl-CoA transferase subunit beta YP_007382158.1 3089985 D 1274814 CDS YP_007382159.1 443618303 14482961 3090632..3091954 1 NC_020163.1 COG2031 Short chain fatty acids transporter; short chain fatty acid transporter 3091954 14482961 APECO78_14950 Escherichia coli APEC O78 short chain fatty acid transporter YP_007382159.1 3090632 D 1274814 CDS YP_007382160.1 443618304 14482962 3091985..3093169 1 NC_020163.1 COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 3093169 14482962 APECO78_14955 Escherichia coli APEC O78 acetyl-CoA acetyltransferase YP_007382160.1 3091985 D 1274814 CDS YP_007382161.1 443618305 14482963 complement(3093243..3094019) 1 NC_020163.1 COG4676 Uncharacterized protein conserved in bacteria; hypothetical protein 3094019 14482963 APECO78_14960 Escherichia coli APEC O78 hypothetical protein YP_007382161.1 3093243 R 1274814 CDS YP_007382162.1 443618306 14482964 complement(3094024..3095673) 1 NC_020163.1 COG5445 Predicted secreted protein; hypothetical protein 3095673 14482964 APECO78_14965 Escherichia coli APEC O78 hypothetical protein YP_007382162.1 3094024 R 1274814 CDS YP_007382163.1 443618307 14482965 complement(3095674..3100278) 1 NC_020163.1 COG2373 Large extracellular alpha-helical protein; hypothetical protein 3100278 14482965 APECO78_14970 Escherichia coli APEC O78 hypothetical protein YP_007382163.1 3095674 R 1274814 CDS YP_007382164.1 443618308 14482966 complement(3100212..3100835) 1 NC_020163.1 COG3234 Uncharacterized protein conserved in bacteria; hypothetical protein 3100835 14482966 APECO78_14975 Escherichia coli APEC O78 hypothetical protein YP_007382164.1 3100212 R 1274814 CDS YP_007382165.1 443618309 14482967 complement(3100832..3102520) 1 NC_020163.1 COG4685 Uncharacterized protein conserved in bacteria; hypothetical protein 3102520 14482967 APECO78_14980 Escherichia coli APEC O78 hypothetical protein YP_007382165.1 3100832 R 1274814 CDS YP_007382166.1 443618310 14482968 complement(3102669..3105296) 1 NC_020163.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A 3105296 14482968 APECO78_14985 Escherichia coli APEC O78 DNA gyrase subunit A YP_007382166.1 3102669 R 1274814 CDS YP_007382167.1 443618311 14482969 3105443..3106165 1 NC_020163.1 COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase; 3-demethylubiquinone-9 3-methyltransferase 3106165 14482969 APECO78_14990 Escherichia coli APEC O78 3-demethylubiquinone-9 3-methyltransferase YP_007382167.1 3105443 D 1274814 CDS YP_007382168.1 443618312 14482970 complement(3106293..3110045) 1 NC_020163.1 COG3468 Type V secretory pathway, adhesin AidA; adhesin 3110045 14482970 APECO78_14995 Escherichia coli APEC O78 adhesin YP_007382168.1 3106293 R 1274814 CDS YP_007382169.1 443618313 14482971 3110741..3113026 1 NC_020163.1 COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 3113026 14482971 APECO78_15000 Escherichia coli APEC O78 ribonucleotide-diphosphate reductase subunit alpha YP_007382169.1 3110741 D 1274814 CDS YP_007382170.1 443618314 14482972 3113261..3114391 1 NC_020163.1 COG0208 Ribonucleotide reductase, beta subunit; putative ribonucleotide reductase, beta subunit 3114391 14482972 APECO78_15005 Escherichia coli APEC O78 putative ribonucleotide reductase, beta subunit YP_007382170.1 3113261 D 1274814 CDS YP_007382171.1 443618315 14482973 3114391..3114645 1 NC_020163.1 COG0633 Ferredoxin; 2Fe-2S ferredoxin 3114645 14482973 APECO78_15010 Escherichia coli APEC O78 2Fe-2S ferredoxin YP_007382171.1 3114391 D 1274814 CDS YP_007382172.1 443618316 14482974 complement(3114699..3115349) 1 NC_020163.1 hypothetical protein 3115349 14482974 APECO78_15015 Escherichia coli APEC O78 hypothetical protein YP_007382172.1 3114699 R 1274814 CDS YP_007382173.1 443618317 14482975 3115564..3115770 1 NC_020163.1 COG0583 Transcriptional regulator; hypothetical protein 3115770 14482975 APECO78_15020 Escherichia coli APEC O78 hypothetical protein YP_007382173.1 3115564 D 1274814 CDS YP_007382174.1 443618318 14482976 3116236..3117306 1 NC_020163.1 hypothetical protein 3117306 14482976 APECO78_15025 Escherichia coli APEC O78 hypothetical protein YP_007382174.1 3116236 D 1274814 CDS YP_007382175.1 443618319 14482977 complement(3117525..3118601) 1 NC_020163.1 COG0584 Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 3118601 glpQ 14482977 glpQ Escherichia coli APEC O78 glycerophosphodiester phosphodiesterase YP_007382175.1 3117525 R 1274814 CDS YP_007382176.1 443618320 14482978 complement(3118606..3119964) 1 NC_020163.1 COG2271 Sugar phosphate permease; sn-glycerol-3-phosphate transporter 3119964 14482978 APECO78_15035 Escherichia coli APEC O78 sn-glycerol-3-phosphate transporter YP_007382176.1 3118606 R 1274814 CDS YP_007382177.1 443618321 14482979 3120237..3121865 1 NC_020163.1 COG0578 Glycerol-3-phosphate dehydrogenase; sn-glycerol-3-phosphate dehydrogenase subunit A 3121865 14482979 APECO78_15040 Escherichia coli APEC O78 sn-glycerol-3-phosphate dehydrogenase subunit A YP_007382177.1 3120237 D 1274814 CDS YP_007382178.1 443618322 14482980 3121855..3123114 1 NC_020163.1 COG3075 Anaerobic glycerol-3-phosphate dehydrogenase; anaerobic glycerol-3-phosphate dehydrogenase subunit B 3123114 14482980 APECO78_15045 Escherichia coli APEC O78 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_007382178.1 3121855 D 1274814 CDS YP_007382179.1 443618323 14482981 3123111..3124301 1 NC_020163.1 COG0247 Fe-S oxidoreductase; sn-glycerol-3-phosphate dehydrogenase subunit C 3124301 glpC 14482981 glpC Escherichia coli APEC O78 sn-glycerol-3-phosphate dehydrogenase subunit C YP_007382179.1 3123111 D 1274814 CDS YP_007382180.1 443618324 14482982 3124495..3125397 1 NC_020163.1 COG5464 Uncharacterized conserved protein; hypothetical protein 3125397 14482982 APECO78_15055 Escherichia coli APEC O78 hypothetical protein YP_007382180.1 3124495 D 1274814 CDS YP_007382181.1 443618325 14482983 complement(3125438..3125827) 1 NC_020163.1 COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; 2-keto-3-deoxy-L-rhamnonate aldolase 3125827 14482983 APECO78_15060 Escherichia coli APEC O78 2-keto-3-deoxy-L-rhamnonate aldolase YP_007382181.1 3125438 R 1274814 CDS YP_007382182.1 443618326 14482984 complement(3125963..3127165) 1 NC_020163.1 COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; hypothetical protein 3127165 14482984 APECO78_15065 Escherichia coli APEC O78 hypothetical protein YP_007382182.1 3125963 R 1274814 CDS YP_007382183.1 443618327 14482985 complement(3127265..3127807) 1 NC_020163.1 outer membrane porin protein 3127807 14482985 APECO78_15070 Escherichia coli APEC O78 outer membrane porin protein YP_007382183.1 3127265 R 1274814 CDS YP_007382184.1 443618328 14482986 3128086..3128511 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; nucleoside triphosphatase NudI 3128511 14482986 APECO78_15075 Escherichia coli APEC O78 nucleoside triphosphatase NudI YP_007382184.1 3128086 D 1274814 CDS YP_007382185.1 443618329 14482987 complement(3128550..3129152) 1 NC_020163.1 lipopolysaccharide core heptose(II)-phosphate phosphatase 3129152 14482987 APECO78_15080 Escherichia coli APEC O78 lipopolysaccharide core heptose(II)-phosphate phosphatase YP_007382185.1 3128550 R 1274814 CDS YP_007382186.1 443618330 14482988 3129460..3130599 1 NC_020163.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 3130599 14482988 APECO78_15085 Escherichia coli APEC O78 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_007382186.1 3129460 D 1274814 CDS YP_007382187.1 443618331 14482989 3130603..3131571 1 NC_020163.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 3131571 14482989 APECO78_15090 Escherichia coli APEC O78 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_007382187.1 3130603 D 1274814 CDS YP_007382188.1 443618332 14482990 3131571..3133553 1 NC_020163.1 COG0223 Methionyl-tRNA formyltransferase; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 3133553 14482990 APECO78_15095 Escherichia coli APEC O78 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_007382188.1 3131571 D 1274814 CDS YP_007382189.1 443618333 14482991 3133550..3134440 1 NC_020163.1 COG0726 Predicted xylanase/chitin deacetylase; hypothetical protein 3134440 14482991 APECO78_15100 Escherichia coli APEC O78 hypothetical protein YP_007382189.1 3133550 D 1274814 CDS YP_007382190.1 443618334 14482992 3134440..3136092 1 NC_020163.1 COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; 4-amino-4-deoxy-L-arabinose transferase 3136092 14482992 APECO78_15105 Escherichia coli APEC O78 4-amino-4-deoxy-L-arabinose transferase YP_007382190.1 3134440 D 1274814 CDS YP_007382191.1 443618335 14482993 3136089..3136424 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; polymyxin resistance protein PmrL 3136424 14482993 APECO78_15110 Escherichia coli APEC O78 polymyxin resistance protein PmrL YP_007382191.1 3136089 D 1274814 CDS YP_007382192.1 443618336 14482994 3136424..3136810 1 NC_020163.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF 3136810 14482994 APECO78_15115 Escherichia coli APEC O78 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF YP_007382192.1 3136424 D 1274814 CDS YP_007382193.1 443618337 14482995 complement(3136804..3137070) 1 NC_020163.1 COG1601 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain; polymyxin resistance protein B 3137070 14482995 APECO78_15120 Escherichia coli APEC O78 polymyxin resistance protein B YP_007382193.1 3136804 R 1274814 CDS YP_007382194.1 443618338 14482996 complement(3137180..3138535) 1 NC_020163.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; O-succinylbenzoic acid--CoA ligase 3138535 14482996 APECO78_15125 Escherichia coli APEC O78 O-succinylbenzoic acid--CoA ligase YP_007382194.1 3137180 R 1274814 CDS YP_007382195.1 443618339 14482997 complement(3138532..3139494) 1 NC_020163.1 COG1441 O-succinylbenzoate synthase; O-succinylbenzoate synthase 3139494 14482997 APECO78_15130 Escherichia coli APEC O78 O-succinylbenzoate synthase YP_007382195.1 3138532 R 1274814 CDS YP_007382196.1 443618340 14482998 complement(3139494..3140351) 1 NC_020163.1 COG0447 Dihydroxynaphthoic acid synthase; dihydroxynaphthoic acid synthetase 3140351 14482998 APECO78_15135 Escherichia coli APEC O78 dihydroxynaphthoic acid synthetase YP_007382196.1 3139494 R 1274814 CDS YP_007382197.1 443618341 14482999 complement(3140366..3141124) 1 NC_020163.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 3141124 14482999 APECO78_15140 Escherichia coli APEC O78 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_007382197.1 3140366 R 1274814 CDS YP_007382198.1 443618342 14483000 complement(3141121..3142791) 1 NC_020163.1 COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1- carboxylate synthase 3142791 14483000 APECO78_15145 Escherichia coli APEC O78 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1- carboxylate synthase YP_007382198.1 3141121 R 1274814 CDS YP_007382199.1 443618343 14483001 complement(3142880..3144175) 1 NC_020163.1 COG1169 Isochorismate synthase; menaquinone-specific isochorismate synthase 3144175 14483001 APECO78_15150 Escherichia coli APEC O78 menaquinone-specific isochorismate synthase YP_007382199.1 3142880 R 1274814 CDS YP_007382200.1 443618344 14483002 complement(3144254..3144559) 1 NC_020163.1 COG4575 Uncharacterized conserved protein; hypothetical protein 3144559 14483002 APECO78_15155 Escherichia coli APEC O78 hypothetical protein YP_007382200.1 3144254 R 1274814 CDS YP_007382201.1 443618345 14483003 complement(3144614..3145075) 1 NC_020163.1 COG2153 Predicted acyltransferase; acyltransferase 3145075 14483003 APECO78_15160 Escherichia coli APEC O78 acyltransferase YP_007382201.1 3144614 R 1274814 CDS YP_007382202.1 443618346 14483004 3145140..3146057 1 NC_020163.1 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; ribonuclease BN 3146057 14483004 APECO78_15165 Escherichia coli APEC O78 ribonuclease BN YP_007382202.1 3145140 D 1274814 CDS YP_007382203.1 443618347 14483005 complement(3147534..3149288) 1 NC_020163.1 COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; hypothetical protein 3149288 14483005 APECO78_15180 Escherichia coli APEC O78 hypothetical protein YP_007382203.1 3147534 R 1274814 CDS YP_007382204.1 443618348 14483006 3149426..3150397 1 NC_020163.1 COG2234 Predicted aminopeptidases; peptidase 3150397 14483006 APECO78_15185 Escherichia coli APEC O78 peptidase YP_007382204.1 3149426 D 1274814 CDS YP_007382205.1 443618349 14483007 3150500..3151003 1 NC_020163.1 hypothetical protein 3151003 14483007 APECO78_15190 Escherichia coli APEC O78 hypothetical protein YP_007382205.1 3150500 D 1274814 CDS YP_007382206.1 443618350 14483008 complement(3151070..3152527) 1 NC_020163.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH:ubiquinone oxidoreductase subunit N 3152527 14483008 APECO78_15195 Escherichia coli APEC O78 NADH:ubiquinone oxidoreductase subunit N YP_007382206.1 3151070 R 1274814 CDS YP_007382207.1 443618351 14483009 complement(3152534..3154063) 1 NC_020163.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH dehydrogenase subunit M 3154063 14483009 APECO78_15200 Escherichia coli APEC O78 NADH dehydrogenase subunit M YP_007382207.1 3152534 R 1274814 CDS YP_007382208.1 443618352 14483010 complement(3154227..3156068) 1 NC_020163.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH:ubiquinone oxidoreductase subunit L 3156068 14483010 APECO78_15205 Escherichia coli APEC O78 NADH:ubiquinone oxidoreductase subunit L YP_007382208.1 3154227 R 1274814 CDS YP_007382209.1 443618353 14483011 complement(3156065..3156367) 1 NC_020163.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH:ubiquinone oxidoreductase subunit K 3156367 14483011 APECO78_15210 Escherichia coli APEC O78 NADH:ubiquinone oxidoreductase subunit K YP_007382209.1 3156065 R 1274814 CDS YP_007382210.1 443618354 14483012 complement(3156364..3156918) 1 NC_020163.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH:ubiquinone oxidoreductase subunit J 3156918 14483012 APECO78_15215 Escherichia coli APEC O78 NADH:ubiquinone oxidoreductase subunit J YP_007382210.1 3156364 R 1274814 CDS YP_007382211.1 443618355 14483013 complement(3156930..3157472) 1 NC_020163.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I 3157472 14483013 APECO78_15220 Escherichia coli APEC O78 NADH dehydrogenase subunit I YP_007382211.1 3156930 R 1274814 CDS YP_007382212.1 443618356 14483014 complement(3157487..3158464) 1 NC_020163.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH:ubiquinone oxidoreductase subunit H 3158464 14483014 APECO78_15225 Escherichia coli APEC O78 NADH:ubiquinone oxidoreductase subunit H YP_007382212.1 3157487 R 1274814 CDS YP_007382213.1 443618357 14483015 complement(3158461..3161187) 1 NC_020163.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G 3161187 14483015 APECO78_15230 Escherichia coli APEC O78 NADH dehydrogenase subunit G YP_007382213.1 3158461 R 1274814 CDS YP_007382214.1 443618358 14483016 complement(3161240..3162577) 1 NC_020163.1 COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; NADH dehydrogenase I subunit F 3162577 14483016 APECO78_15235 Escherichia coli APEC O78 NADH dehydrogenase I subunit F YP_007382214.1 3161240 R 1274814 CDS YP_007382215.1 443618359 14483017 complement(3162574..3163074) 1 NC_020163.1 COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; NADH dehydrogenase subunit E 3163074 14483017 APECO78_15240 Escherichia coli APEC O78 NADH dehydrogenase subunit E YP_007382215.1 3162574 R 1274814 CDS YP_007382216.1 443618360 14483018 complement(3163077..3164879) 1 NC_020163.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; NADH:ubiquinone oxidoreductase subunit C/D 3164879 14483018 APECO78_15245 Escherichia coli APEC O78 NADH:ubiquinone oxidoreductase subunit C/D YP_007382216.1 3163077 R 1274814 CDS YP_007382217.1 443618361 14483019 complement(3164973..3165635) 1 NC_020163.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B 3165635 14483019 APECO78_15250 Escherichia coli APEC O78 NADH dehydrogenase subunit B YP_007382217.1 3164973 R 1274814 CDS YP_007382218.1 443618362 14483020 complement(3165651..3166094) 1 NC_020163.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH:ubiquinone oxidoreductase subunit A 3166094 14483020 APECO78_15255 Escherichia coli APEC O78 NADH:ubiquinone oxidoreductase subunit A YP_007382218.1 3165651 R 1274814 CDS YP_007382219.1 443618363 14483021 complement(3166725..3167663) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional repressor LrhA 3167663 14483021 APECO78_15260 Escherichia coli APEC O78 DNA-binding transcriptional repressor LrhA YP_007382219.1 3166725 R 1274814 CDS YP_007382220.1 443618364 14483022 3168583..3169800 1 NC_020163.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase AlaT 3169800 14483022 APECO78_15265 Escherichia coli APEC O78 aminotransferase AlaT YP_007382220.1 3168583 D 1274814 CDS YP_007382221.1 443618365 14483023 3169884..3170483 1 NC_020163.1 COG1896 Predicted hydrolases of HD superfamily; 5'-nucleotidase 3170483 14483023 APECO78_15270 Escherichia coli APEC O78 5'-nucleotidase YP_007382221.1 3169884 D 1274814 CDS YP_007382222.1 443618366 14483024 complement(3170542..3172374) 1 NC_020163.1 COG0471 Di- and tricarboxylate transporters; transporter 3172374 14483024 APECO78_15275 Escherichia coli APEC O78 transporter YP_007382222.1 3170542 R 1274814 CDS YP_007382223.1 443618367 14483025 complement(3172461..3173111) 1 NC_020163.1 COG0637 Predicted phosphatase/phosphohexomutase; phosphatase 3173111 14483025 APECO78_15280 Escherichia coli APEC O78 phosphatase YP_007382223.1 3172461 R 1274814 CDS YP_007382224.1 443618368 14483026 complement(3173122..3173616) 1 NC_020163.1 COG3013 Uncharacterized conserved protein; hypothetical protein 3173616 14483026 APECO78_15285 Escherichia coli APEC O78 hypothetical protein YP_007382224.1 3173122 R 1274814 CDS YP_007382225.1 443618369 14483027 complement(3173699..3174154) 1 NC_020163.1 COG3092 Uncharacterized protein conserved in bacteria; hypothetical protein 3174154 14483027 APECO78_15290 Escherichia coli APEC O78 hypothetical protein YP_007382225.1 3173699 R 1274814 CDS YP_007382226.1 443618370 14483028 complement(3174223..3174354) 1 NC_020163.1 hypothetical protein 3174354 14483028 APECO78_15295 Escherichia coli APEC O78 hypothetical protein YP_007382226.1 3174223 R 1274814 CDS YP_007382227.1 443618371 14483029 3174492..3175694 1 NC_020163.1 COG0282 Acetate kinase; acetate kinase A/propionate kinase 2 3175694 14483029 APECO78_15300 Escherichia coli APEC O78 acetate kinase A/propionate kinase 2 YP_007382227.1 3174492 D 1274814 CDS YP_007382228.1 443618372 14483030 3175769..3177913 1 NC_020163.1 COG0857 BioD-like N-terminal domain of phosphotransacetylase; phosphate acetyltransferase 3177913 14483030 APECO78_15305 Escherichia coli APEC O78 phosphate acetyltransferase YP_007382228.1 3175769 D 1274814 CDS YP_007382229.1 443618373 14483031 3178103..3179623 1 NC_020163.1 COG1288 Predicted membrane protein; hypothetical protein 3179623 14483031 APECO78_15310 Escherichia coli APEC O78 hypothetical protein YP_007382229.1 3178103 D 1274814 CDS YP_007382230.1 443618374 14483032 complement(3179656..3180198) 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase YfcD 3180198 14483032 APECO78_15315 Escherichia coli APEC O78 NUDIX hydrolase YfcD YP_007382230.1 3179656 R 1274814 CDS YP_007382231.1 443618375 14483033 complement(3180256..3180807) 1 NC_020163.1 COG0622 Predicted phosphoesterase; putative phosphodiesterase 3180807 14483033 APECO78_15320 Escherichia coli APEC O78 putative phosphodiesterase YP_007382231.1 3180256 R 1274814 CDS YP_007382232.1 443618376 14483034 complement(3180863..3181507) 1 NC_020163.1 COG0625 Glutathione S-transferase; hypothetical protein 3181507 14483034 APECO78_15325 Escherichia coli APEC O78 hypothetical protein YP_007382232.1 3180863 R 1274814 CDS YP_007382233.1 443618377 14483035 3181643..3182290 1 NC_020163.1 COG0625 Glutathione S-transferase; GSH-dependent disulfide bond oxidoreductase 3182290 14483035 APECO78_15330 Escherichia coli APEC O78 GSH-dependent disulfide bond oxidoreductase YP_007382233.1 3181643 D 1274814 CDS YP_007382234.1 443618378 14483036 3182347..3182709 1 NC_020163.1 COG1539 Dihydroneopterin aldolase; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3182709 14483036 APECO78_15335 Escherichia coli APEC O78 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_007382234.1 3182347 D 1274814 CDS YP_007382235.1 443618379 14483037 3182730..3183623 1 NC_020163.1 COG1090 Predicted nucleoside-diphosphate sugar epimerase; hypothetical protein 3183623 14483037 APECO78_15340 Escherichia coli APEC O78 hypothetical protein YP_007382235.1 3182730 D 1274814 CDS YP_007382236.1 443618380 14483038 complement(3183671..3184561) 1 NC_020163.1 putative transposase 3184561 14483038 APECO78_15345 Escherichia coli APEC O78 putative transposase YP_007382236.1 3183671 R 1274814 CDS YP_007382237.1 443618381 14483039 complement(3184758..3185531) 1 NC_020163.1 COG4598 ABC-type histidine transport system, ATPase component; histidine/lysine/arginine/ornithine transporter subunit 3185531 14483039 APECO78_15350 Escherichia coli APEC O78 histidine/lysine/arginine/ornithine transporter subunit YP_007382237.1 3184758 R 1274814 CDS YP_007382238.1 443618382 14483040 complement(3185539..3186255) 1 NC_020163.1 COG4160 ABC-type arginine/histidine transport system, permease component; histidine/lysine/arginine/ornithine ABC transporter permease HisM 3186255 14483040 APECO78_15355 Escherichia coli APEC O78 histidine/lysine/arginine/ornithine ABC transporter permease HisM YP_007382238.1 3185539 R 1274814 CDS YP_007382239.1 443618383 14483041 complement(3186252..3186938) 1 NC_020163.1 COG4215 ABC-type arginine transport system, permease component; histidine/lysine/arginine/ornithine ABC transporter permease HisQ 3186938 14483041 APECO78_15360 Escherichia coli APEC O78 histidine/lysine/arginine/ornithine ABC transporter permease HisQ YP_007382239.1 3186252 R 1274814 CDS YP_007382240.1 443618384 14483042 complement(3187028..3187810) 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; histidine ABC transporter substrate-binding protein HisJ 3187810 14483042 APECO78_15365 Escherichia coli APEC O78 histidine ABC transporter substrate-binding protein HisJ YP_007382240.1 3187028 R 1274814 CDS YP_007382241.1 443618385 14483043 complement(3188031..3188813) 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; ABC transporter lysine/arginine/ornithine binding periplasmic protein 3188813 14483043 APECO78_15370 Escherichia coli APEC O78 ABC transporter lysine/arginine/ornithine binding periplasmic protein YP_007382241.1 3188031 R 1274814 CDS YP_007382242.1 443618386 14483044 complement(3189079..3189648) 1 NC_020163.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3189648 14483044 APECO78_15375 Escherichia coli APEC O78 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_007382242.1 3189079 R 1274814 CDS YP_007382243.1 443618387 14483045 complement(3189743..3191260) 1 NC_020163.1 COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; amidophosphoribosyltransferase 3191260 14483045 APECO78_15380 Escherichia coli APEC O78 amidophosphoribosyltransferase YP_007382243.1 3189743 R 1274814 CDS YP_007382244.1 443618388 14483046 complement(3191297..3191785) 1 NC_020163.1 COG1286 Uncharacterized membrane protein, required for colicin V production; colicin V production protein 3191785 14483046 APECO78_15385 Escherichia coli APEC O78 colicin V production protein YP_007382244.1 3191297 R 1274814 CDS YP_007382245.1 443618389 14483047 complement(3192044..3192706) 1 NC_020163.1 COG3147 Uncharacterized protein conserved in bacteria; DedD protein 3192706 14483047 APECO78_15390 Escherichia coli APEC O78 DedD protein YP_007382245.1 3192044 R 1274814 CDS YP_007382246.1 443618390 14483048 complement(3192696..3193964) 1 NC_020163.1 COG0285 Folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 3193964 14483048 APECO78_15395 Escherichia coli APEC O78 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_007382246.1 3192696 R 1274814 CDS YP_007382247.1 443618391 14483049 complement(3194034..3194948) 1 NC_020163.1 COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta 3194948 14483049 APECO78_15400 Escherichia coli APEC O78 acetyl-CoA carboxylase subunit beta YP_007382247.1 3194034 R 1274814 CDS YP_007382248.1 443618392 14483050 complement(3195104..3195763) 1 NC_020163.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 3195763 14483050 APECO78_15405 Escherichia coli APEC O78 hypothetical protein YP_007382248.1 3195104 R 1274814 CDS YP_007382249.1 443618393 14483051 complement(3195846..3196658) 1 NC_020163.1 COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A 3196658 truA 14483051 truA Escherichia coli APEC O78 tRNA pseudouridine synthase A YP_007382249.1 3195846 R 1274814 CDS YP_007382250.1 443618394 14483052 complement(3196658..3197671) 1 NC_020163.1 COG0136 Aspartate-semialdehyde dehydrogenase; semialdehyde dehydrogenase 3197671 14483052 APECO78_15415 Escherichia coli APEC O78 semialdehyde dehydrogenase YP_007382250.1 3196658 R 1274814 CDS YP_007382251.1 443618395 14483053 complement(3197737..3198873) 1 NC_020163.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; erythronate-4-phosphate dehydrogenase PdxB 3198873 14483053 APECO78_15420 Escherichia coli APEC O78 erythronate-4-phosphate dehydrogenase PdxB YP_007382251.1 3197737 R 1274814 CDS YP_007382252.1 443618396 14483054 3198972..3199967 1 NC_020163.1 flagella biosynthesis regulator 3199967 flk 14483054 flk Escherichia coli APEC O78 flagella biosynthesis regulator YP_007382252.1 3198972 D 1274814 CDS YP_007382253.1 443618397 14483055 complement(3199964..3201142) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily protein 3201142 14483055 APECO78_15430 Escherichia coli APEC O78 major facilitator superfamily protein YP_007382253.1 3199964 R 1274814 CDS YP_007382254.1 443618398 14483056 complement(3201426..3202646) 1 NC_020163.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase I 3202646 14483056 APECO78_15435 Escherichia coli APEC O78 3-oxoacyl-(acyl carrier protein) synthase I YP_007382254.1 3201426 R 1274814 CDS YP_007382255.1 443618399 14483057 3202805..3204811 1 NC_020163.1 COG4121 Uncharacterized conserved protein; bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase 3204811 mnmC 14483057 mnmC Escherichia coli APEC O78 bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase YP_007382255.1 3202805 D 1274814 CDS YP_007382256.1 443618400 14483058 complement(3204932..3205210) 1 NC_020163.1 hypothetical protein 3205210 14483058 APECO78_15445 Escherichia coli APEC O78 hypothetical protein YP_007382256.1 3204932 R 1274814 CDS YP_007382257.1 443618401 14483059 complement(3205244..3205792) 1 NC_020163.1 COG3101 Uncharacterized protein conserved in bacteria; hypothetical protein 3205792 14483059 APECO78_15450 Escherichia coli APEC O78 hypothetical protein YP_007382257.1 3205244 R 1274814 CDS YP_007382258.1 443618402 14483060 complement(3205792..3206601) 1 NC_020163.1 COG0730 Predicted permeases; hypothetical protein 3206601 14483060 APECO78_15455 Escherichia coli APEC O78 hypothetical protein YP_007382258.1 3205792 R 1274814 CDS YP_007382259.1 443618403 14483061 complement(3206601..3207425) 1 NC_020163.1 COG3770 Murein endopeptidase; penicillin-insensitive murein endopeptidase 3207425 mepA 14483061 mepA Escherichia coli APEC O78 penicillin-insensitive murein endopeptidase YP_007382259.1 3206601 R 1274814 CDS YP_007382260.1 443618404 14483062 complement(3207429..3208514) 1 NC_020163.1 COG0082 Chorismate synthase; chorismate synthase 3208514 14483062 APECO78_15465 Escherichia coli APEC O78 chorismate synthase YP_007382260.1 3207429 R 1274814 CDS YP_007382261.1 443618405 14483063 complement(3208549..3209481) 1 NC_020163.1 COG2890 Methylase of polypeptide chain release factors; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 3209481 14483063 APECO78_15470 Escherichia coli APEC O78 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_007382261.1 3208549 R 1274814 CDS YP_007382262.1 443618406 14483064 3209647..3210198 1 NC_020163.1 COG2840 Uncharacterized protein conserved in bacteria; hypothetical protein 3210198 14483064 APECO78_15475 Escherichia coli APEC O78 hypothetical protein YP_007382262.1 3209647 D 1274814 CDS YP_007382263.1 443618407 14483065 complement(3210320..3210598) 1 NC_020163.1 hypothetical protein 3210598 14483065 APECO78_15480 Escherichia coli APEC O78 hypothetical protein YP_007382263.1 3210320 R 1274814 CDS YP_007382264.1 443618408 14483066 complement(3211179..3211703) 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial subunit protein 3211703 14483066 APECO78_15485 Escherichia coli APEC O78 fimbrial subunit protein YP_007382264.1 3211179 R 1274814 CDS YP_007382265.1 443618409 14483067 complement(3211700..3212170) 1 NC_020163.1 fimbrial subunit protein 3212170 14483067 APECO78_15490 Escherichia coli APEC O78 fimbrial subunit protein YP_007382265.1 3211700 R 1274814 CDS YP_007382266.1 443618410 14483068 complement(3212167..3212673) 1 NC_020163.1 minor fimbrial subunit 3212673 14483068 APECO78_15495 Escherichia coli APEC O78 minor fimbrial subunit YP_007382266.1 3212167 R 1274814 CDS YP_007382267.1 443618411 14483069 complement(3212690..3213442) 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; chaperone 3213442 14483069 APECO78_15500 Escherichia coli APEC O78 chaperone YP_007382267.1 3212690 R 1274814 CDS YP_007382268.1 443618412 14483070 complement(3213462..3216107) 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; fimbrial outer membrane usher protein StfC 3216107 14483070 APECO78_15505 Escherichia coli APEC O78 fimbrial outer membrane usher protein StfC YP_007382268.1 3213462 R 1274814 CDS YP_007382269.1 443618413 14483071 complement(3216189..3216752) 1 NC_020163.1 fimbrial-like protein 3216752 14483071 APECO78_15510 Escherichia coli APEC O78 fimbrial-like protein YP_007382269.1 3216189 R 1274814 CDS YP_007382270.1 443618414 14483072 complement(3217436..3217921) 1 NC_020163.1 COG2062 Phosphohistidine phosphatase SixA; phosphohistidine phosphatase 3217921 14483072 APECO78_15515 Escherichia coli APEC O78 phosphohistidine phosphatase YP_007382270.1 3217436 R 1274814 CDS YP_007382271.1 443618415 14483073 complement(3218124..3220268) 1 NC_020163.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha 3220268 fadJ 14483073 fadJ Escherichia coli APEC O78 multifunctional fatty acid oxidation complex subunit alpha YP_007382271.1 3218124 R 1274814 CDS YP_007382272.1 443618416 14483074 complement(3220268..3221578) 1 NC_020163.1 COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase 3221578 fadI 14483074 fadI Escherichia coli APEC O78 3-ketoacyl-CoA thiolase YP_007382272.1 3220268 R 1274814 CDS YP_007382273.1 443618417 14483075 complement(3221759..3222043) 1 NC_020163.1 COG3691 Uncharacterized protein conserved in bacteria; hypothetical protein 3222043 14483075 APECO78_15530 Escherichia coli APEC O78 hypothetical protein YP_007382273.1 3221759 R 1274814 CDS YP_007382274.1 443618418 14483076 3222409..3223755 1 NC_020163.1 COG2067 Long-chain fatty acid transport protein; long-chain fatty acid outer membrane transporter 3223755 14483076 APECO78_15535 Escherichia coli APEC O78 long-chain fatty acid outer membrane transporter YP_007382274.1 3222409 D 1274814 CDS YP_007382275.1 443618419 14483077 3224123..3225181 1 NC_020163.1 hypothetical protein 3225181 14483077 APECO78_15540 Escherichia coli APEC O78 hypothetical protein YP_007382275.1 3224123 D 1274814 CDS YP_007382276.1 443618420 14483078 complement(3225363..3226118) 1 NC_020163.1 COG2853 Surface lipoprotein; ABC transporter outer membrane lipoprotein 3226118 14483078 APECO78_15545 Escherichia coli APEC O78 ABC transporter outer membrane lipoprotein YP_007382276.1 3225363 R 1274814 CDS YP_007382277.1 443618421 14483079 3226413..3227345 1 NC_020163.1 COG2116 Formate/nitrite family of transporters; hypothetical protein 3227345 14483079 APECO78_15550 Escherichia coli APEC O78 hypothetical protein YP_007382277.1 3226413 D 1274814 CDS YP_007382278.1 443618422 14484631 complement(3227937..3228806) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; galactoside permease 3228806 lacY 14484631 lacY Escherichia coli APEC O78 galactoside permease YP_007382278.1 3227937 R 1274814 CDS YP_007382279.1 443618423 14483081 complement(3228888..3229184) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; galactoside permease 3229184 lacY 14483081 lacY Escherichia coli APEC O78 galactoside permease YP_007382279.1 3228888 R 1274814 CDS YP_007382280.1 443618424 14483082 complement(3229256..3230170) 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; aminoimidazole riboside kinase 3230170 14483082 APECO78_15565 Escherichia coli APEC O78 aminoimidazole riboside kinase YP_007382280.1 3229256 R 1274814 CDS YP_007382281.1 443618425 14483083 3230386..3231819 1 NC_020163.1 COG1621 Beta-fructosidases (levanase/invertase); sucrose-6-phosphate hydrolase 3231819 14483083 APECO78_15570 Escherichia coli APEC O78 sucrose-6-phosphate hydrolase YP_007382281.1 3230386 D 1274814 CDS YP_007382282.1 443618426 14483084 complement(3231827..3232822) 1 NC_020163.1 COG1609 Transcriptional regulators; sucrose operon repressor 3232822 14483084 APECO78_15575 Escherichia coli APEC O78 sucrose operon repressor YP_007382282.1 3231827 R 1274814 CDS YP_007382283.1 443618427 14483085 3233065..3233283 1 NC_020163.1 COG2610 H+/gluconate symporter and related permeases; permease DsdX 3233283 14483085 APECO78_15580 Escherichia coli APEC O78 permease DsdX YP_007382283.1 3233065 D 1274814 CDS YP_007382284.1 443618428 14483086 3233301..3234629 1 NC_020163.1 COG3048 D-serine dehydratase; D-serine dehydratase 3234629 14483086 APECO78_15585 Escherichia coli APEC O78 D-serine dehydratase YP_007382284.1 3233301 D 1274814 CDS YP_007382285.1 443618429 14483087 complement(3234737..3236275) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative multidrug efflux system 3236275 14483087 APECO78_15590 Escherichia coli APEC O78 putative multidrug efflux system YP_007382285.1 3234737 R 1274814 CDS YP_007382286.1 443618430 14483088 complement(3236275..3237438) 1 NC_020163.1 COG1566 Multidrug resistance efflux pump; EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component 3237438 14483088 APECO78_15595 Escherichia coli APEC O78 EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component YP_007382286.1 3236275 R 1274814 CDS YP_007382287.1 443618431 14483089 3237854..3238468 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator EvgA 3238468 14483089 APECO78_15600 Escherichia coli APEC O78 DNA-binding transcriptional activator EvgA YP_007382287.1 3237854 D 1274814 CDS YP_007382288.1 443618432 14483090 3238473..3242066 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hybrid sensory histidine kinase in two-component regulatory system with EvgA 3242066 14483090 APECO78_15605 Escherichia coli APEC O78 hybrid sensory histidine kinase in two-component regulatory system with EvgA YP_007382288.1 3238473 D 1274814 CDS YP_007382289.1 443618433 14483091 complement(3242122..3243267) 1 NC_020163.1 COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; hypothetical protein 3243267 14483091 APECO78_15610 Escherichia coli APEC O78 hypothetical protein YP_007382289.1 3242122 R 1274814 CDS YP_007382290.1 443618434 14483092 complement(3243341..3244285) 1 NC_020163.1 COG0679 Predicted permeases; transporter YfdV 3244285 14483092 APECO78_15615 Escherichia coli APEC O78 transporter YfdV YP_007382290.1 3243341 R 1274814 CDS YP_007382291.1 443618435 14483093 complement(3244355..3246049) 1 NC_020163.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; oxalyl-CoA decarboxylase 3246049 14483093 APECO78_15620 Escherichia coli APEC O78 oxalyl-CoA decarboxylase YP_007382291.1 3244355 R 1274814 CDS YP_007382292.1 443618436 14483094 complement(3246103..3247353) 1 NC_020163.1 COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; formyl-coenzyme A transferase 3247353 14483094 APECO78_15625 Escherichia coli APEC O78 formyl-coenzyme A transferase YP_007382292.1 3246103 R 1274814 CDS YP_007382293.1 443618437 14483095 complement(3247866..3248498) 1 NC_020163.1 hypothetical protein 3248498 14483095 APECO78_15630 Escherichia coli APEC O78 hypothetical protein YP_007382293.1 3247866 R 1274814 CDS YP_007382294.1 443618438 14483096 3248794..3249069 1 NC_020163.1 lipoprotein 3249069 14483096 APECO78_15635 Escherichia coli APEC O78 lipoprotein YP_007382294.1 3248794 D 1274814 CDS YP_007382295.1 443618439 14483097 complement(3249146..3249388) 1 NC_020163.1 hypothetical protein 3249388 14483097 APECO78_15640 Escherichia coli APEC O78 hypothetical protein YP_007382295.1 3249146 R 1274814 CDS YP_007382296.1 443618440 14483098 3249741..3250661 1 NC_020163.1 COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3250661 14483098 APECO78_15645 Escherichia coli APEC O78 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_007382296.1 3249741 D 1274814 CDS YP_007382297.1 443618441 14483099 complement(3251153..3252391) 1 NC_020163.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase 3252391 14483099 APECO78_15650 Escherichia coli APEC O78 aminotransferase YP_007382297.1 3251153 R 1274814 CDS YP_007382298.1 443618442 14483100 3252768..3254465 1 NC_020163.1 COG3275 Putative regulator of cell autolysis; hypothetical protein 3254465 14483100 APECO78_15655 Escherichia coli APEC O78 hypothetical protein YP_007382298.1 3252768 D 1274814 CDS YP_007382299.1 443618443 14483101 3254480..3255214 1 NC_020163.1 COG3279 Response regulator of the LytR/AlgR family; putative response regulator in two-component system with YpdA 3255214 14483101 APECO78_15660 Escherichia coli APEC O78 putative response regulator in two-component system with YpdA YP_007382299.1 3254480 D 1274814 CDS YP_007382300.1 443618444 14483102 3255227..3256084 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding protein, ARAC-type 3256084 14483102 APECO78_15665 Escherichia coli APEC O78 DNA-binding protein, ARAC-type YP_007382300.1 3255227 D 1274814 CDS YP_007382301.1 443618445 14483103 complement(3258607..3259644) 1 NC_020163.1 COG1363 Cellulase M and related proteins; exoaminopeptidase 3259644 14483103 APECO78_15680 Escherichia coli APEC O78 exoaminopeptidase YP_007382301.1 3258607 R 1274814 CDS YP_007382302.1 443618446 14483104 complement(3259644..3260612) 1 NC_020163.1 COG0006 Xaa-Pro aminopeptidase; aminopeptidase 3260612 14483104 APECO78_15685 Escherichia coli APEC O78 aminopeptidase YP_007382302.1 3259644 R 1274814 CDS YP_007382303.1 443618447 14483105 complement(3260576..3260728) 1 NC_020163.1 aminopeptidase 3260728 14483105 APECO78_15690 Escherichia coli APEC O78 aminopeptidase YP_007382303.1 3260576 R 1274814 CDS YP_007382304.1 443618448 14483106 complement(3260743..3261990) 1 NC_020163.1 COG1299 Phosphotransferase system, fructose-specific IIC component; fructose-like permease IIC component 3261990 14483106 APECO78_15695 Escherichia coli APEC O78 fructose-like permease IIC component YP_007382304.1 3260743 R 1274814 CDS YP_007382305.1 443618449 14483107 complement(3262012..3262338) 1 NC_020163.1 COG1445 Phosphotransferase system fructose-specific component IIB; putative PTS system IIB component ypdH 3262338 14483107 APECO78_15700 Escherichia coli APEC O78 putative PTS system IIB component ypdH YP_007382305.1 3262012 R 1274814 CDS YP_007382306.1 443618450 14483108 complement(3262557..3263522) 1 NC_020163.1 COG0837 Glucokinase; glucokinase 3263522 14483108 APECO78_15705 Escherichia coli APEC O78 glucokinase YP_007382306.1 3262557 R 1274814 CDS YP_007382307.1 443618451 14483109 3263726..3264982 1 NC_020163.1 ion channel protein 3264982 14483109 APECO78_15710 Escherichia coli APEC O78 ion channel protein YP_007382307.1 3263726 D 1274814 CDS YP_007382308.1 443618452 14483110 3265097..3265423 1 NC_020163.1 hypothetical protein 3265423 14483110 APECO78_15715 Escherichia coli APEC O78 hypothetical protein YP_007382308.1 3265097 D 1274814 CDS YP_007382309.1 443618453 14483111 complement(3265564..3266802) 1 NC_020163.1 COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; manganese transport protein MntH 3266802 14483111 APECO78_15720 Escherichia coli APEC O78 manganese transport protein MntH YP_007382309.1 3265564 R 1274814 CDS YP_007382310.1 443618454 14483112 3267138..3268340 1 NC_020163.1 COG1972 Nucleoside permease; nucleoside (except guanosine) transporter NupC 3268340 14483112 APECO78_15725 Escherichia coli APEC O78 nucleoside (except guanosine) transporter NupC YP_007382310.1 3267138 D 1274814 CDS YP_007382311.1 443618455 14483113 complement(3268390..3270579) 1 NC_020163.1 COG2199 FOG: GGDEF domain; diguanylate cyclase/phosphodiesterase 3270579 14483113 APECO78_15730 Escherichia coli APEC O78 diguanylate cyclase/phosphodiesterase YP_007382311.1 3268390 R 1274814 CDS YP_007382312.1 443618456 14484633 3271198..3271557 1 NC_020163.1 hypothetical protein 3271557 14484633 APECO78_15735 Escherichia coli APEC O78 hypothetical protein YP_007382312.1 3271198 D 1274814 CDS YP_007382313.1 443618457 14483115 3271559..3271951 1 NC_020163.1 COG1396 Predicted transcriptional regulators; DNA-binding transcriptional regulator 3271951 14483115 APECO78_15740 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007382313.1 3271559 D 1274814 CDS YP_007382314.1 443618458 14483116 complement(3272003..3273418) 1 NC_020163.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA synthetase 3273418 14483116 APECO78_15745 Escherichia coli APEC O78 glutamyl-tRNA synthetase YP_007382314.1 3272003 R 1274814 CDS YP_007382315.1 443618459 14484637 complement(3274339..3275223) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator XapR 3275223 14484637 APECO78_15750 Escherichia coli APEC O78 DNA-binding transcriptional activator XapR YP_007382315.1 3274339 R 1274814 CDS YP_007382316.1 443618460 14483118 complement(3275264..3275422) 1 NC_020163.1 hypothetical protein 3275422 14483118 APECO78_15755 Escherichia coli APEC O78 hypothetical protein YP_007382316.1 3275264 R 1274814 CDS YP_007382317.1 443618461 14483119 complement(3275475..3276731) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; xanthosine transporter 3276731 14483119 APECO78_15760 Escherichia coli APEC O78 xanthosine transporter YP_007382317.1 3275475 R 1274814 CDS YP_007382318.1 443618462 14483120 complement(3276791..3277624) 1 NC_020163.1 COG0005 Purine nucleoside phosphorylase; purine nucleoside phosphorylase 3277624 14483120 APECO78_15765 Escherichia coli APEC O78 purine nucleoside phosphorylase YP_007382318.1 3276791 R 1274814 CDS YP_007382319.1 443618463 14483121 3277873..3278637 1 NC_020163.1 hypothetical protein 3278637 14483121 APECO78_15770 Escherichia coli APEC O78 hypothetical protein YP_007382319.1 3277873 D 1274814 CDS YP_007382320.1 443618464 14483122 complement(3278676..3279602) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 3279602 14483122 APECO78_15775 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007382320.1 3278676 R 1274814 CDS YP_007382321.1 443618465 14483123 3279692..3280690 1 NC_020163.1 COG0385 Predicted Na+-dependent transporter; inner membrane protein 3280690 14483123 APECO78_15780 Escherichia coli APEC O78 inner membrane protein YP_007382321.1 3279692 D 1274814 CDS YP_007382322.1 443618466 14483124 complement(3280687..3280905) 1 NC_020163.1 COG3530 Uncharacterized protein conserved in bacteria; hypothetical protein 3280905 14483124 APECO78_15785 Escherichia coli APEC O78 hypothetical protein YP_007382322.1 3280687 R 1274814 CDS YP_007382323.1 443618467 14483125 complement(3280907..3282922) 1 NC_020163.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA 3282922 ligA 14483125 ligA Escherichia coli APEC O78 NAD-dependent DNA ligase LigA YP_007382323.1 3280907 R 1274814 CDS YP_007382324.1 443618468 14483126 complement(3282993..3283979) 1 NC_020163.1 COG3115 Cell division protein; cell division protein ZipA 3283979 14483126 APECO78_15795 Escherichia coli APEC O78 cell division protein ZipA YP_007382324.1 3282993 R 1274814 CDS YP_007382325.1 443618469 14483127 3284209..3284970 1 NC_020163.1 COG2981 Uncharacterized protein involved in cysteine biosynthesis; sulfate transport protein CysZ 3284970 14483127 APECO78_15800 Escherichia coli APEC O78 sulfate transport protein CysZ YP_007382325.1 3284209 D 1274814 CDS YP_007382326.1 443618470 14483128 3285155..3286126 1 NC_020163.1 COG0031 Cysteine synthase; cysteine synthase A 3286126 14483128 APECO78_15805 Escherichia coli APEC O78 cysteine synthase A YP_007382326.1 3285155 D 1274814 CDS YP_007382327.1 443618471 14483129 3286510..3286767 1 NC_020163.1 COG1925 Phosphotransferase system, HPr-related proteins; phosphocarrier protein ptsH 3286767 14483129 APECO78_15810 Escherichia coli APEC O78 phosphocarrier protein ptsH YP_007382327.1 3286510 D 1274814 CDS YP_007382328.1 443618472 14483130 3286812..3288539 1 NC_020163.1 COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); phosphoenolpyruvate-protein phosphotransferase 3288539 14483130 APECO78_15815 Escherichia coli APEC O78 phosphoenolpyruvate-protein phosphotransferase YP_007382328.1 3286812 D 1274814 CDS YP_007382329.1 443618473 14483131 3288580..3289089 1 NC_020163.1 COG2190 Phosphotransferase system IIA components; PTS system glucose-specific transporter 3289089 14483131 APECO78_15820 Escherichia coli APEC O78 PTS system glucose-specific transporter YP_007382329.1 3288580 D 1274814 CDS YP_007382330.1 443618474 14483132 complement(3289131..3289982) 1 NC_020163.1 COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase 3289982 pdxK 14483132 pdxK Escherichia coli APEC O78 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase YP_007382330.1 3289131 R 1274814 CDS YP_007382331.1 443618475 14483133 3290087..3290455 1 NC_020163.1 hypothetical protein 3290455 14483133 APECO78_15830 Escherichia coli APEC O78 hypothetical protein YP_007382331.1 3290087 D 1274814 CDS YP_007382332.1 443618476 14483134 complement(3290458..3291369) 1 NC_020163.1 COG0031 Cysteine synthase; cysteine synthase B 3291369 cysM 14483134 cysM Escherichia coli APEC O78 cysteine synthase B YP_007382332.1 3290458 R 1274814 CDS YP_007382333.1 443618477 14483135 complement(3291503..3292600) 1 NC_020163.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; sulfate/thiosulfate transporter subunit 3292600 14483135 APECO78_15840 Escherichia coli APEC O78 sulfate/thiosulfate transporter subunit YP_007382333.1 3291503 R 1274814 CDS YP_007382334.1 443618478 14483136 complement(3292590..3293465) 1 NC_020163.1 COG4208 ABC-type sulfate transport system, permease component; sulfate/thiosulfate transporter permease subunit 3293465 cysW 14483136 cysW Escherichia coli APEC O78 sulfate/thiosulfate transporter permease subunit YP_007382334.1 3292590 R 1274814 CDS YP_007382335.1 443618479 14483137 complement(3293465..3294298) 1 NC_020163.1 COG0555 ABC-type sulfate transport system, permease component; sulfate/thiosulfate transporter subunit 3294298 14483137 APECO78_15850 Escherichia coli APEC O78 sulfate/thiosulfate transporter subunit YP_007382335.1 3293465 R 1274814 CDS YP_007382336.1 443618480 14483138 complement(3294298..3295314) 1 NC_020163.1 COG4150 ABC-type sulfate transport system, periplasmic component; thiosulfate transporter subunit 3295314 14483138 APECO78_15855 Escherichia coli APEC O78 thiosulfate transporter subunit YP_007382336.1 3294298 R 1274814 CDS YP_007382337.1 443618481 14483139 complement(3295485..3296276) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase 3296276 14483139 APECO78_15860 Escherichia coli APEC O78 short chain dehydrogenase YP_007382337.1 3295485 R 1274814 CDS YP_007382338.1 443618482 14483140 complement(3296405..3297262) 1 NC_020163.1 COG1737 Transcriptional regulators; transcriptional regulator MurR 3297262 14483140 APECO78_15865 Escherichia coli APEC O78 transcriptional regulator MurR YP_007382338.1 3296405 R 1274814 CDS YP_007382339.1 443618483 14483141 3297426..3298322 1 NC_020163.1 COG2103 Predicted sugar phosphate isomerase; N-acetylmuramic acid-6-phosphate etherase 3298322 murQ 14483141 murQ Escherichia coli APEC O78 N-acetylmuramic acid-6-phosphate etherase YP_007382339.1 3297426 D 1274814 CDS YP_007382340.1 443618484 14483142 3298326..3299750 1 NC_020163.1 COG1264 Phosphotransferase system IIB components; PTS system N-acetylmuramic acid transporter subunits IIBC 3299750 murP 14483142 murP Escherichia coli APEC O78 PTS system N-acetylmuramic acid transporter subunits IIBC YP_007382340.1 3298326 D 1274814 CDS YP_007382341.1 443618485 14483143 3299755..3301059 1 NC_020163.1 COG1680 Beta-lactamase class C and other penicillin binding proteins; periplasmic esterase 3301059 14483143 APECO78_15880 Escherichia coli APEC O78 periplasmic esterase YP_007382341.1 3299755 D 1274814 CDS YP_007382342.1 443618486 14483144 complement(3301117..3302016) 1 NC_020163.1 COG2837 Predicted iron-dependent peroxidase; dyp-type peroxidase family protein 3302016 14483144 APECO78_15885 Escherichia coli APEC O78 dyp-type peroxidase family protein YP_007382342.1 3301117 R 1274814 CDS YP_007382343.1 443618487 14483145 complement(3302112..3302687) 1 NC_020163.1 RpoE-regulated lipoprotein 3302687 14483145 APECO78_15890 Escherichia coli APEC O78 RpoE-regulated lipoprotein YP_007382343.1 3302112 R 1274814 CDS YP_007382344.1 443618488 14483146 complement(3302748..3303197) 1 NC_020163.1 hypothetical protein 3303197 14483146 APECO78_15895 Escherichia coli APEC O78 hypothetical protein YP_007382344.1 3302748 R 1274814 CDS YP_007382345.1 443618489 14483147 complement(3303184..3303609) 1 NC_020163.1 COG0456 Acetyltransferases; acetyltransferase 3303609 14483147 APECO78_15900 Escherichia coli APEC O78 acetyltransferase YP_007382345.1 3303184 R 1274814 CDS YP_007382346.1 443618490 14483148 3303823..3304692 1 NC_020163.1 COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-l-alanine amidase I 3304692 14483148 APECO78_15905 Escherichia coli APEC O78 N-acetylmuramoyl-l-alanine amidase I YP_007382346.1 3303823 D 1274814 CDS YP_007382347.1 443618491 14483149 3304696..3305595 1 NC_020163.1 COG0408 Coproporphyrinogen III oxidase; coproporphyrinogen III oxidase 3305595 14483149 APECO78_15910 Escherichia coli APEC O78 coproporphyrinogen III oxidase YP_007382347.1 3304696 D 1274814 CDS YP_007382348.1 443618492 14483150 complement(3305601..3306653) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; transcriptional regulator EutR 3306653 14483150 APECO78_15915 Escherichia coli APEC O78 transcriptional regulator EutR YP_007382348.1 3305601 R 1274814 CDS YP_007382349.1 443618493 14483151 complement(3306699..3307199) 1 NC_020163.1 COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; carboxysome structural protein EutK 3307199 14483151 APECO78_15920 Escherichia coli APEC O78 carboxysome structural protein EutK YP_007382349.1 3306699 R 1274814 CDS YP_007382350.1 443618494 14483152 complement(3307212..3307871) 1 NC_020163.1 COG4816 Ethanolamine utilization protein; ethanolamine utilization protein EutL 3307871 14483152 APECO78_15925 Escherichia coli APEC O78 ethanolamine utilization protein EutL YP_007382350.1 3307212 R 1274814 CDS YP_007382351.1 443618495 14483153 complement(3307881..3308768) 1 NC_020163.1 COG4302 Ethanolamine ammonia-lyase, small subunit; ethanolamine ammonia-lyase small subunit 3308768 14483153 APECO78_15930 Escherichia coli APEC O78 ethanolamine ammonia-lyase small subunit YP_007382351.1 3307881 R 1274814 CDS YP_007382352.1 443618496 14483154 complement(3308789..3310150) 1 NC_020163.1 COG4303 Ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia-lyase, large subunit 3310150 14483154 APECO78_15935 Escherichia coli APEC O78 ethanolamine ammonia-lyase, large subunit YP_007382352.1 3308789 R 1274814 CDS YP_007382353.1 443618497 14483155 complement(3310162..3310455) 1 NC_020163.1 COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition; reactivating factor for ethanolamine ammonia lyase 3310455 eutA 14483155 eutA Escherichia coli APEC O78 reactivating factor for ethanolamine ammonia lyase YP_007382353.1 3310162 R 1274814 CDS YP_007382354.1 443618498 14483156 complement(3310504..3311565) 1 NC_020163.1 COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition; reactivating factor for ethanolamine ammonia lyase 3311565 eutA 14483156 eutA Escherichia coli APEC O78 reactivating factor for ethanolamine ammonia lyase YP_007382354.1 3310504 R 1274814 CDS YP_007382355.1 443618499 14483157 complement(3311562..3312788) 1 NC_020163.1 COG3192 Ethanolamine utilization protein; ethanolamine utilization protein EutH 3312788 14483157 APECO78_15950 Escherichia coli APEC O78 ethanolamine utilization protein EutH YP_007382355.1 3311562 R 1274814 CDS YP_007382356.1 443618500 14483158 complement(3312905..3314092) 1 NC_020163.1 COG1454 Alcohol dehydrogenase, class IV; ethanol dehydrogenase EutG 3314092 14483158 APECO78_15955 Escherichia coli APEC O78 ethanol dehydrogenase EutG YP_007382356.1 3312905 R 1274814 CDS YP_007382357.1 443618501 14483159 complement(3314082..3314918) 1 NC_020163.1 COG4820 Ethanolamine utilization protein, possible chaperonin; ethanolamine utilization protein EutJ 3314918 14483159 APECO78_15960 Escherichia coli APEC O78 ethanolamine utilization protein EutJ YP_007382357.1 3314082 R 1274814 CDS YP_007382358.1 443618502 14483160 complement(3314929..3316332) 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase EutE 3316332 14483160 APECO78_15965 Escherichia coli APEC O78 aldehyde dehydrogenase EutE YP_007382358.1 3314929 R 1274814 CDS YP_007382359.1 443618503 14483161 complement(3316344..3316631) 1 NC_020163.1 COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; ethanolamine catabolic microcompartment shell protein EutN 3316631 14483161 APECO78_15970 Escherichia coli APEC O78 ethanolamine catabolic microcompartment shell protein EutN YP_007382359.1 3316344 R 1274814 CDS YP_007382360.1 443618504 14483162 complement(3316738..3317031) 1 NC_020163.1 COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; carboxysome structural protein EutM 3317031 14483162 APECO78_15975 Escherichia coli APEC O78 carboxysome structural protein EutM YP_007382360.1 3316738 R 1274814 CDS YP_007382361.1 443618505 14483163 complement(3317070..3317888) 1 NC_020163.1 COG0280 Phosphotransacetylase; phosphotransacetylase 3317888 14483163 APECO78_15980 Escherichia coli APEC O78 phosphotransacetylase YP_007382361.1 3317070 R 1274814 CDS YP_007382362.1 443618506 14483164 complement(3317889..3318086) 1 NC_020163.1 COG0280 Phosphotransacetylase; phosphotransacetylase 3318086 eutD 14483164 eutD Escherichia coli APEC O78 phosphotransacetylase YP_007382362.1 3317889 R 1274814 CDS YP_007382363.1 443618507 14483165 complement(3318083..3318886) 1 NC_020163.1 COG4812 Ethanolamine utilization cobalamin adenosyltransferase; ethanolamine utilization cobalamin adenosyltransferase 3318886 14483165 APECO78_15990 Escherichia coli APEC O78 ethanolamine utilization cobalamin adenosyltransferase YP_007382363.1 3318083 R 1274814 CDS YP_007382364.1 443618508 14483166 complement(3318883..3319584) 1 NC_020163.1 COG4766 Ethanolamine utilization protein; ethanolamine utilization protein EutQ 3319584 14483166 APECO78_15995 Escherichia coli APEC O78 ethanolamine utilization protein EutQ YP_007382364.1 3318883 R 1274814 CDS YP_007382365.1 443618509 14483167 complement(3319559..3320038) 1 NC_020163.1 COG4917 Ethanolamine utilization protein; ethanolamine utilization protein EutP 3320038 14483167 APECO78_16000 Escherichia coli APEC O78 ethanolamine utilization protein EutP YP_007382365.1 3319559 R 1274814 CDS YP_007382366.1 443618510 14483168 complement(3320051..3320386) 1 NC_020163.1 COG4810 Ethanolamine utilization protein; carboxysome structural protein EutS 3320386 14483168 APECO78_16005 Escherichia coli APEC O78 carboxysome structural protein EutS YP_007382366.1 3320051 R 1274814 CDS YP_007382367.1 443618511 14483169 complement(3320679..3322958) 1 NC_020163.1 COG0281 Malic enzyme; bifunctional malic enzyme oxidoreductase/phosphotransacetylase 3322958 14483169 APECO78_16010 Escherichia coli APEC O78 bifunctional malic enzyme oxidoreductase/phosphotransacetylase YP_007382367.1 3320679 R 1274814 CDS YP_007382368.1 443618512 14483170 3323247..3324197 1 NC_020163.1 COG0176 Transaldolase; transaldolase A 3324197 14483170 APECO78_16015 Escherichia coli APEC O78 transaldolase A YP_007382368.1 3323247 D 1274814 CDS YP_007382369.1 443618513 14483171 3324217..3326220 1 NC_020163.1 COG0021 Transketolase; transketolase 3326220 14483171 APECO78_16020 Escherichia coli APEC O78 transketolase YP_007382369.1 3324217 D 1274814 CDS YP_007382370.1 443618514 14483172 complement(3326316..3327359) 1 NC_020163.1 COG1088 dTDP-D-glucose 4,6-dehydratase; hypothetical protein 3327359 14483172 APECO78_16025 Escherichia coli APEC O78 hypothetical protein YP_007382370.1 3326316 R 1274814 CDS YP_007382371.1 443618515 14483173 complement(3327485..3328060) 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; GDP-mannose pyrophosphatase NudK 3328060 14483173 APECO78_16030 Escherichia coli APEC O78 GDP-mannose pyrophosphatase NudK YP_007382371.1 3327485 R 1274814 CDS YP_007382372.1 443618516 14483174 complement(3328128..3330107) 1 NC_020163.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; oxidoreductase Fe-S binding subunit 3330107 14483174 APECO78_16035 Escherichia coli APEC O78 oxidoreductase Fe-S binding subunit YP_007382372.1 3328128 R 1274814 CDS YP_007382373.1 443618517 14483175 3330312..3332012 1 NC_020163.1 COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific; nitrate/nitrite sensor protein NarQ 3332012 14483175 APECO78_16040 Escherichia coli APEC O78 nitrate/nitrite sensor protein NarQ YP_007382373.1 3330312 D 1274814 CDS YP_007382374.1 443618518 14483176 3332176..3335289 1 NC_020163.1 COG0841 Cation/multidrug efflux pump; aminoglycoside/multidrug efflux system 3335289 14483176 APECO78_16045 Escherichia coli APEC O78 aminoglycoside/multidrug efflux system YP_007382374.1 3332176 D 1274814 CDS YP_007382375.1 443618519 14483177 3335828..3336184 1 NC_020163.1 COG1393 Arsenate reductase and related proteins, glutaredoxin family; reductase 3336184 14483177 APECO78_16050 Escherichia coli APEC O78 reductase YP_007382375.1 3335828 D 1274814 CDS YP_007382376.1 443618520 14483178 3336188..3337315 1 NC_020163.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase 3337315 14483178 APECO78_16055 Escherichia coli APEC O78 succinyl-diaminopimelate desuccinylase YP_007382376.1 3336188 D 1274814 CDS YP_007382377.1 443618521 14483179 3337343..3337543 1 NC_020163.1 hypothetical protein 3337543 14483179 APECO78_16060 Escherichia coli APEC O78 hypothetical protein YP_007382377.1 3337343 D 1274814 CDS YP_007382378.1 443618522 14483180 complement(3337653..3338351) 1 NC_020163.1 COG0400 Predicted esterase; hydrolase 3338351 14483180 APECO78_16065 Escherichia coli APEC O78 hydrolase YP_007382378.1 3337653 R 1274814 CDS YP_007382379.1 443618523 14483181 complement(3338425..3340440) 1 NC_020163.1 COG1444 Predicted P-loop ATPase fused to an acetyltransferase; methionine tRNA cytidine acetyltransferase 3340440 14483181 APECO78_16070 Escherichia coli APEC O78 methionine tRNA cytidine acetyltransferase YP_007382379.1 3338425 R 1274814 CDS YP_007382380.1 443618524 14483182 complement(3340455..3341318) 1 NC_020163.1 COG2321 Predicted metalloprotease; hypothetical protein 3341318 14483182 APECO78_16075 Escherichia coli APEC O78 hypothetical protein YP_007382380.1 3340455 R 1274814 CDS YP_007382381.1 443618525 14483183 complement(3341465..3341863) 1 NC_020163.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain; plasmid maintenance protein 3341863 14483183 APECO78_16080 Escherichia coli APEC O78 plasmid maintenance protein YP_007382381.1 3341465 R 1274814 CDS YP_007382382.1 443618526 14483184 complement(3341863..3342090) 1 NC_020163.1 COG4456 Virulence-associated protein and related proteins; putative toxin of the MvpT-MvpA toxin-antitoxin system 3342090 14483184 APECO78_16085 Escherichia coli APEC O78 putative toxin of the MvpT-MvpA toxin-antitoxin system YP_007382382.1 3341863 R 1274814 CDS YP_007382383.1 443618527 14483185 complement(3342244..3342957) 1 NC_020163.1 COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; phosphoribosylaminoimidazole-succinocarboxamide 3342957 14483185 APECO78_16090 Escherichia coli APEC O78 phosphoribosylaminoimidazole-succinocarboxamide YP_007382383.1 3342244 R 1274814 CDS YP_007382384.1 443618528 14483186 3343008..3343259 1 NC_020163.1 hypothetical protein 3343259 14483186 APECO78_16095 Escherichia coli APEC O78 hypothetical protein YP_007382384.1 3343008 D 1274814 CDS YP_007382385.1 443618529 14483187 complement(3343170..3344204) 1 NC_020163.1 COG3317 Uncharacterized lipoprotein; Lipoprotein-34 3344204 14483187 APECO78_16100 Escherichia coli APEC O78 Lipoprotein-34 YP_007382385.1 3343170 R 1274814 CDS YP_007382386.1 443618530 14483188 complement(3344221..3345099) 1 NC_020163.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase 3345099 14483188 APECO78_16105 Escherichia coli APEC O78 dihydrodipicolinate synthase YP_007382386.1 3344221 R 1274814 CDS YP_007382387.1 443618531 14483189 3345245..3345817 1 NC_020163.1 COG2716 Glycine cleavage system regulatory protein; glycine cleavage system transcriptional repressor 3345817 14483189 APECO78_16110 Escherichia coli APEC O78 glycine cleavage system transcriptional repressor YP_007382387.1 3345245 D 1274814 CDS YP_007382388.1 443618532 14483190 3345817..3346287 1 NC_020163.1 COG1225 Peroxiredoxin; thioredoxin-dependent thiol peroxidase 3346287 14483190 APECO78_16115 Escherichia coli APEC O78 thioredoxin-dependent thiol peroxidase YP_007382388.1 3345817 D 1274814 CDS YP_007382389.1 443618533 14483191 3346540..3347157 1 NC_020163.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; hydrogenase 4 Fe-S subunit 3347157 14483191 APECO78_16120 Escherichia coli APEC O78 hydrogenase 4 Fe-S subunit YP_007382389.1 3346540 D 1274814 CDS YP_007382390.1 443618534 14483192 3347157..3347828 1 NC_020163.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; hydrogenase 4 subunit B 3347828 14483192 APECO78_16125 Escherichia coli APEC O78 hydrogenase 4 subunit B YP_007382390.1 3347157 D 1274814 CDS YP_007382391.1 443618535 14483193 3347783..3349174 1 NC_020163.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; hydrogenase 4 subunit B 3349174 14483193 APECO78_16130 Escherichia coli APEC O78 hydrogenase 4 subunit B YP_007382391.1 3347783 D 1274814 CDS YP_007382392.1 443618536 14483194 3349185..3350132 1 NC_020163.1 COG0650 Formate hydrogenlyase subunit 4; hydrogenase 4 membrane subunit 3350132 hyfC 14483194 hyfC Escherichia coli APEC O78 hydrogenase 4 membrane subunit YP_007382392.1 3349185 D 1274814 CDS YP_007382393.1 443618537 14483195 3350149..3350979 1 NC_020163.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; hydrogenase 4 subunit D 3350979 14483195 APECO78_16140 Escherichia coli APEC O78 hydrogenase 4 subunit D YP_007382393.1 3350149 D 1274814 CDS YP_007382394.1 443618538 14483196 3351015..3351380 1 NC_020163.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; hydrogenase 4 subunit D 3351380 14483196 APECO78_16145 Escherichia coli APEC O78 hydrogenase 4 subunit D YP_007382394.1 3351015 D 1274814 CDS YP_007382395.1 443618539 14483197 3351392..3352042 1 NC_020163.1 COG4237 Hydrogenase 4 membrane component (E); hydrogenase 4 membrane subunit 3352042 14483197 APECO78_16150 Escherichia coli APEC O78 hydrogenase 4 membrane subunit YP_007382395.1 3351392 D 1274814 CDS YP_007382396.1 443618540 14483198 3352047..3353627 1 NC_020163.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; hydrogenase 4 subunit F 3353627 14483198 APECO78_16155 Escherichia coli APEC O78 hydrogenase 4 subunit F YP_007382396.1 3352047 D 1274814 CDS YP_007382397.1 443618541 14483199 3353617..3355284 1 NC_020163.1 COG3262 Ni,Fe-hydrogenase III component G; hydrogenase 4 subunit 3355284 14483199 APECO78_16160 Escherichia coli APEC O78 hydrogenase 4 subunit YP_007382397.1 3353617 D 1274814 CDS YP_007382398.1 443618542 14483200 3355294..3355839 1 NC_020163.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); hydrogenase 4 subunit H 3355839 14483200 APECO78_16165 Escherichia coli APEC O78 hydrogenase 4 subunit H YP_007382398.1 3355294 D 1274814 CDS YP_007382399.1 443618543 14483201 3355836..3356594 1 NC_020163.1 COG3260 Ni,Fe-hydrogenase III small subunit; hydrogenase 4, Fe-S subunit 3356594 14483201 APECO78_16170 Escherichia coli APEC O78 hydrogenase 4, Fe-S subunit YP_007382399.1 3355836 D 1274814 CDS YP_007382400.1 443618544 14483202 3356587..3357000 1 NC_020163.1 formate hydrogenlyase maturation protein HycH 3357000 14483202 APECO78_16175 Escherichia coli APEC O78 formate hydrogenlyase maturation protein HycH YP_007382400.1 3356587 D 1274814 CDS YP_007382401.1 443618545 14483203 3357030..3359042 1 NC_020163.1 COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; DNA-binding transcriptional activator, formate sensing 3359042 14483203 APECO78_16180 Escherichia coli APEC O78 DNA-binding transcriptional activator, formate sensing YP_007382401.1 3357030 D 1274814 CDS YP_007382402.1 443618546 14483204 3359064..3359912 1 NC_020163.1 COG2116 Formate/nitrite family of transporters; formate transporter 3359912 focB 14483204 focB Escherichia coli APEC O78 formate transporter YP_007382402.1 3359064 D 1274814 CDS YP_007382403.1 443618547 14483205 complement(3359950..3361011) 1 NC_020163.1 COG0628 Predicted permease; permease perM 3361011 14483205 APECO78_16190 Escherichia coli APEC O78 permease perM YP_007382403.1 3359950 R 1274814 CDS YP_007382404.1 443618548 14483206 3361224..3362687 1 NC_020163.1 COG4783 Putative Zn-dependent protease, contains TPR repeats; peptidase, M48 family protein 3362687 14483206 APECO78_16195 Escherichia coli APEC O78 peptidase, M48 family protein YP_007382404.1 3361224 D 1274814 CDS YP_007382405.1 443618549 14483207 3362708..3363067 1 NC_020163.1 COG1393 Arsenate reductase and related proteins, glutaredoxin family; oxidoreductase 3363067 14483207 APECO78_16200 Escherichia coli APEC O78 oxidoreductase YP_007382405.1 3362708 D 1274814 CDS YP_007382406.1 443618550 14483208 complement(3363205..3363951) 1 NC_020163.1 COG0593 ATPase involved in DNA replication initiation; DNA replication initiation factor 3363951 14483208 APECO78_16205 Escherichia coli APEC O78 DNA replication initiation factor YP_007382406.1 3363205 R 1274814 CDS YP_007382407.1 443618551 14483209 complement(3364001..3365290) 1 NC_020163.1 COG2233 Xanthine/uracil permeases; uracil transporter 3365290 14483209 APECO78_16210 Escherichia coli APEC O78 uracil transporter YP_007382407.1 3364001 R 1274814 CDS YP_007382408.1 443618552 14483210 complement(3365377..3366003) 1 NC_020163.1 COG0035 Uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 3366003 14483210 APECO78_16215 Escherichia coli APEC O78 uracil phosphoribosyltransferase YP_007382408.1 3365377 R 1274814 CDS YP_007382409.1 443618553 14483211 3366328..3367365 1 NC_020163.1 COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; phosphoribosylaminoimidazole synthetase 3367365 14483211 APECO78_16220 Escherichia coli APEC O78 phosphoribosylaminoimidazole synthetase YP_007382409.1 3366328 D 1274814 CDS YP_007382410.1 443618554 14483212 3367365..3368003 1 NC_020163.1 COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; phosphoribosylglycinamide formyltransferase 3368003 14483212 APECO78_16225 Escherichia coli APEC O78 phosphoribosylglycinamide formyltransferase YP_007382410.1 3367365 D 1274814 CDS YP_007382411.1 443618555 14483213 3368174..3370240 1 NC_020163.1 COG0855 Polyphosphate kinase; polyphosphate kinase 3370240 14483213 APECO78_16230 Escherichia coli APEC O78 polyphosphate kinase YP_007382411.1 3368174 D 1274814 CDS YP_007382412.1 443618556 14483214 3370245..3371786 1 NC_020163.1 COG0248 Exopolyphosphatase; exopolyphosphatase 3371786 14483214 APECO78_16235 Escherichia coli APEC O78 exopolyphosphatase YP_007382412.1 3370245 D 1274814 CDS YP_007382413.1 443618557 14483215 complement(3371825..3374068) 1 NC_020163.1 COG2199 FOG: GGDEF domain; putative inner membrane protein 3374068 14483215 APECO78_16240 Escherichia coli APEC O78 putative inner membrane protein YP_007382413.1 3371825 R 1274814 CDS YP_007382414.1 443618558 14483216 complement(3374250..3374402) 1 NC_020163.1 hypothetical protein 3374402 14483216 APECO78_16245 Escherichia coli APEC O78 hypothetical protein YP_007382414.1 3374250 R 1274814 CDS YP_007382415.1 443618559 14483217 3374420..3374611 1 NC_020163.1 hypothetical protein 3374611 14483217 APECO78_16250 Escherichia coli APEC O78 hypothetical protein YP_007382415.1 3374420 D 1274814 CDS YP_007382416.1 443618560 14483218 3374922..3375440 1 NC_020163.1 outer membrane lipoprotein 3375440 14483218 APECO78_16255 Escherichia coli APEC O78 outer membrane lipoprotein YP_007382416.1 3374922 D 1274814 CDS YP_007382417.1 443618561 14483219 3375456..3375995 1 NC_020163.1 hypothetical protein 3375995 14483219 APECO78_16260 Escherichia coli APEC O78 hypothetical protein YP_007382417.1 3375456 D 1274814 CDS YP_007382418.1 443618562 14483220 complement(3376090..3377667) 1 NC_020163.1 COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase 3377667 guaA 14483220 guaA Escherichia coli APEC O78 GMP synthase YP_007382418.1 3376090 R 1274814 CDS YP_007382419.1 443618563 14483221 complement(3377736..3379202) 1 NC_020163.1 COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase 3379202 14483221 APECO78_16270 Escherichia coli APEC O78 inosine 5'-monophosphate dehydrogenase YP_007382419.1 3377736 R 1274814 CDS YP_007382420.1 443618564 14483222 3379364..3380734 1 NC_020163.1 COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 3380734 xseA 14483222 xseA Escherichia coli APEC O78 exodeoxyribonuclease VII large subunit YP_007382420.1 3379364 D 1274814 CDS YP_007382421.1 443618565 14483223 complement(3380731..3380946) 1 NC_020163.1 COG1933 Archaeal DNA polymerase II, large subunit; hypothetical protein 3380946 14483223 APECO78_16280 Escherichia coli APEC O78 hypothetical protein YP_007382421.1 3380731 R 1274814 CDS YP_007382422.1 443618566 14483224 complement(3381015..3382487) 1 NC_020163.1 COG1160 Predicted GTPases; GTP-binding protein Der 3382487 14483224 APECO78_16285 Escherichia coli APEC O78 GTP-binding protein Der YP_007382422.1 3381015 R 1274814 CDS YP_007382423.1 443618567 14483225 complement(3382605..3383783) 1 NC_020163.1 COG1520 FOG: WD40-like repeat; outer membrane biogenesis protein BamB 3383783 14483225 APECO78_16290 Escherichia coli APEC O78 outer membrane biogenesis protein BamB YP_007382423.1 3382605 R 1274814 CDS YP_007382424.1 443618568 14483226 complement(3383794..3384414) 1 NC_020163.1 COG2976 Uncharacterized protein conserved in bacteria; hypothetical protein 3384414 14483226 APECO78_16295 Escherichia coli APEC O78 hypothetical protein YP_007382424.1 3383794 R 1274814 CDS YP_007382425.1 443618569 14483227 complement(3384432..3385706) 1 NC_020163.1 COG0124 Histidyl-tRNA synthetase; histidyl-tRNA synthetase 3385706 14483227 APECO78_16300 Escherichia coli APEC O78 histidyl-tRNA synthetase YP_007382425.1 3384432 R 1274814 CDS YP_007382426.1 443618570 14483228 complement(3385817..3386935) 1 NC_020163.1 COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 3386935 14483228 APECO78_16305 Escherichia coli APEC O78 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_007382426.1 3385817 R 1274814 CDS YP_007382427.1 443618571 14483229 complement(3386962..3387975) 1 NC_020163.1 COG1426 Uncharacterized protein conserved in bacteria; putative regulatory protein 3387975 14483229 APECO78_16310 Escherichia coli APEC O78 putative regulatory protein YP_007382427.1 3386962 R 1274814 CDS YP_007382428.1 443618572 14483230 complement(3388260..3389414) 1 NC_020163.1 COG0820 Predicted Fe-S-cluster redox enzyme; ribosomal RNA large subunit methyltransferase N 3389414 14483230 APECO78_16315 Escherichia coli APEC O78 ribosomal RNA large subunit methyltransferase N YP_007382428.1 3388260 R 1274814 CDS YP_007382429.1 443618573 14483231 complement(3389564..3389995) 1 NC_020163.1 COG0105 Nucleoside diphosphate kinase; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase 3389995 14483231 APECO78_16320 Escherichia coli APEC O78 mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase YP_007382429.1 3389564 R 1274814 CDS YP_007382430.1 443618574 14483232 complement(3390144..3392456) 1 NC_020163.1 COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; penicillin-binding protein 1C 3392456 14483232 APECO78_16325 Escherichia coli APEC O78 penicillin-binding protein 1C YP_007382430.1 3390144 R 1274814 CDS YP_007382431.1 443618575 14483233 complement(3392457..3397418) 1 NC_020163.1 COG2373 Large extracellular alpha-helical protein; hypothetical protein 3397418 14483233 APECO78_16330 Escherichia coli APEC O78 hypothetical protein YP_007382431.1 3392457 R 1274814 CDS YP_007382432.1 443618576 14483234 3397625..3398470 1 NC_020163.1 COG2897 Rhodanese-related sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 3398470 14483234 APECO78_16335 Escherichia coli APEC O78 3-mercaptopyruvate sulfurtransferase YP_007382432.1 3397625 D 1274814 CDS YP_007382433.1 443618577 14483235 complement(3398963..3399739) 1 NC_020163.1 enhanced serine sensitivity protein SseB 3399739 14483235 APECO78_16340 Escherichia coli APEC O78 enhanced serine sensitivity protein SseB YP_007382433.1 3398963 R 1274814 CDS YP_007382434.1 443618578 14483236 complement(3399881..3401164) 1 NC_020163.1 COG0260 Leucyl aminopeptidase; aminopeptidase B 3401164 14483236 APECO78_16345 Escherichia coli APEC O78 aminopeptidase B YP_007382434.1 3399881 R 1274814 CDS YP_007382435.1 443618579 14483237 complement(3401342..3401542) 1 NC_020163.1 COG2975 Uncharacterized protein conserved in bacteria; hypothetical protein 3401542 14483237 APECO78_16350 Escherichia coli APEC O78 hypothetical protein YP_007382435.1 3401342 R 1274814 CDS YP_007382436.1 443618580 14483238 complement(3401554..3401889) 1 NC_020163.1 COG0633 Ferredoxin; 2Fe-2S ferredoxin 3401889 14483238 APECO78_16355 Escherichia coli APEC O78 2Fe-2S ferredoxin YP_007382436.1 3401554 R 1274814 CDS YP_007382437.1 443618581 14483239 complement(3401891..3403741) 1 NC_020163.1 COG0443 Molecular chaperone; chaperone protein HscA 3403741 hscA 14483239 hscA Escherichia coli APEC O78 chaperone protein HscA YP_007382437.1 3401891 R 1274814 CDS YP_007382438.1 443618582 14483240 complement(3403758..3404273) 1 NC_020163.1 COG1076 DnaJ-domain-containing proteins 1; DnaJ-like molecular chaperone specific for IscU 3404273 14483240 APECO78_16365 Escherichia coli APEC O78 DnaJ-like molecular chaperone specific for IscU YP_007382438.1 3403758 R 1274814 CDS YP_007382439.1 443618583 14483241 complement(3404369..3404692) 1 NC_020163.1 COG0316 Uncharacterized conserved protein; iron-sulfur cluster assembly protein 3404692 14483241 APECO78_16370 Escherichia coli APEC O78 iron-sulfur cluster assembly protein YP_007382439.1 3404369 R 1274814 CDS YP_007382440.1 443618584 14483242 complement(3404709..3405095) 1 NC_020163.1 COG0822 NifU homolog involved in Fe-S cluster formation; scaffold protein 3405095 14483242 APECO78_16375 Escherichia coli APEC O78 scaffold protein YP_007382440.1 3404709 R 1274814 CDS YP_007382441.1 443618585 14483243 complement(3405123..3406337) 1 NC_020163.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase 3406337 14483243 APECO78_16380 Escherichia coli APEC O78 cysteine desulfurase YP_007382441.1 3405123 R 1274814 CDS YP_007382442.1 443618586 14483244 complement(3406449..3406937) 1 NC_020163.1 COG1959 Predicted transcriptional regulator; DNA-binding transcriptional regulator IscR 3406937 14483244 APECO78_16385 Escherichia coli APEC O78 DNA-binding transcriptional regulator IscR YP_007382442.1 3406449 R 1274814 CDS YP_007382443.1 443618587 14483245 complement(3407238..3407975) 1 NC_020163.1 COG0565 rRNA methylase; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 3407975 14483245 APECO78_16390 Escherichia coli APEC O78 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ YP_007382443.1 3407238 R 1274814 CDS YP_007382444.1 443618588 14483246 3408094..3408897 1 NC_020163.1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; inositol monophosphatase 3408897 14483246 APECO78_16395 Escherichia coli APEC O78 inositol monophosphatase YP_007382444.1 3408094 D 1274814 CDS YP_007382445.1 443618589 14483247 3409042..3409896 1 NC_020163.1 COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein 3409896 14483247 APECO78_16400 Escherichia coli APEC O78 hypothetical protein YP_007382445.1 3409042 D 1274814 CDS YP_007382446.1 443618590 14483248 3410087..3411367 1 NC_020163.1 COG3711 Transcriptional antiterminator; stationary phase inducible protein CsiE 3411367 14483248 APECO78_16405 Escherichia coli APEC O78 stationary phase inducible protein CsiE YP_007382446.1 3410087 D 1274814 CDS YP_007382447.1 443618591 14483249 complement(3411359..3412498) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; 3-phenylpropionic acid transporter 3412498 14483249 APECO78_16410 Escherichia coli APEC O78 3-phenylpropionic acid transporter YP_007382447.1 3411359 R 1274814 CDS YP_007382448.1 443618592 14483250 complement(3412658..3413548) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator HcaR 3413548 14483250 APECO78_16415 Escherichia coli APEC O78 DNA-binding transcriptional regulator HcaR YP_007382448.1 3412658 R 1274814 CDS YP_007382449.1 443618593 14483251 3413684..3415045 1 NC_020163.1 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit; 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha 3415045 14483251 APECO78_16420 Escherichia coli APEC O78 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha YP_007382449.1 3413684 D 1274814 CDS YP_007382450.1 443618594 14483252 3415042..3415560 1 NC_020163.1 COG5517 Small subunit of phenylpropionate dioxygenase; 3-phenylpropionate dioxygenase subunit beta 3415560 14483252 APECO78_16425 Escherichia coli APEC O78 3-phenylpropionate dioxygenase subunit beta YP_007382450.1 3415042 D 1274814 CDS YP_007382451.1 443618595 14483253 3415560..3415880 1 NC_020163.1 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; 3-phenylpropionate dioxygenase ferredoxin subunit 3415880 14483253 APECO78_16430 Escherichia coli APEC O78 3-phenylpropionate dioxygenase ferredoxin subunit YP_007382451.1 3415560 D 1274814 CDS YP_007382452.1 443618596 14483254 3415877..3416689 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase 3416689 14483254 APECO78_16435 Escherichia coli APEC O78 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase YP_007382452.1 3415877 D 1274814 CDS YP_007382453.1 443618597 14483255 3416699..3417901 1 NC_020163.1 COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; phenylpropionate dioxygenase ferredoxin reductase subunit 3417901 14483255 APECO78_16440 Escherichia coli APEC O78 phenylpropionate dioxygenase ferredoxin reductase subunit YP_007382453.1 3416699 D 1274814 CDS YP_007382454.1 443618598 14483256 3417998..3418420 1 NC_020163.1 COG2259 Predicted membrane protein; putative inner membrane protein 3418420 14483256 APECO78_16445 Escherichia coli APEC O78 putative inner membrane protein YP_007382454.1 3417998 D 1274814 CDS YP_007382455.1 443618599 14483257 complement(3418468..3419340) 1 NC_020163.1 COG2017 Galactose mutarotase and related enzymes; hypothetical protein 3419340 14483257 APECO78_16450 Escherichia coli APEC O78 hypothetical protein YP_007382455.1 3418468 R 1274814 CDS YP_007382456.1 443618600 14483258 complement(3419352..3420413) 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; oxidoreductase, Zn-dependent and NAD(P)-binding protein 3420413 14483258 APECO78_16455 Escherichia coli APEC O78 oxidoreductase, Zn-dependent and NAD(P)-binding protein YP_007382456.1 3419352 R 1274814 CDS YP_007382457.1 443618601 14483259 complement(3420479..3421477) 1 NC_020163.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; putative sugar transporter subunit, membrane component of ABC superfamily protein 3421477 14483259 APECO78_16460 Escherichia coli APEC O78 putative sugar transporter subunit, membrane component of ABC superfamily protein YP_007382457.1 3420479 R 1274814 CDS YP_007382458.1 443618602 14483260 complement(3421502..3423013) 1 NC_020163.1 COG1129 ABC-type sugar transport system, ATPase component; putative sugar ABC transporter ATP-binding protein 3423013 14483260 APECO78_16465 Escherichia coli APEC O78 putative sugar ABC transporter ATP-binding protein YP_007382458.1 3421502 R 1274814 CDS YP_007382459.1 443618603 14483261 complement(3423036..3424019) 1 NC_020163.1 COG1879 ABC-type sugar transport system, periplasmic component; sugar ABC transporter substrate-binding protein 3424019 14483261 APECO78_16470 Escherichia coli APEC O78 sugar ABC transporter substrate-binding protein YP_007382459.1 3423036 R 1274814 CDS YP_007382460.1 443618604 14483262 complement(3424116..3427397) 1 NC_020163.1 COG0457 FOG: TPR repeat; hypothetical protein 3427397 14483262 APECO78_16475 Escherichia coli APEC O78 hypothetical protein YP_007382460.1 3424116 R 1274814 CDS YP_007382461.1 443618605 14483263 3427515..3428708 1 NC_020163.1 COG1940 Transcriptional regulator/sugar kinase; putative DNA-binding transcriptional regulator, NAGC-like protein 3428708 14483263 APECO78_16480 Escherichia coli APEC O78 putative DNA-binding transcriptional regulator, NAGC-like protein YP_007382461.1 3427515 D 1274814 CDS YP_007382462.1 443618606 14483264 complement(3428772..3430025) 1 NC_020163.1 COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase 3430025 14483264 APECO78_16485 Escherichia coli APEC O78 serine hydroxymethyltransferase YP_007382462.1 3428772 R 1274814 CDS YP_007382463.1 443618607 14483265 3430354..3431544 1 NC_020163.1 COG1017 Hemoglobin-like flavoprotein; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 3431544 14483265 APECO78_16490 Escherichia coli APEC O78 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 YP_007382463.1 3430354 D 1274814 CDS YP_007382464.1 443618608 14483266 complement(3431589..3431927) 1 NC_020163.1 COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein P-II 1 3431927 14483266 APECO78_16495 Escherichia coli APEC O78 nitrogen regulatory protein P-II 1 YP_007382464.1 3431589 R 1274814 CDS YP_007382465.1 443618609 14483267 complement(3431988..3433322) 1 NC_020163.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; response regulator GlrR 3433322 14483267 APECO78_16500 Escherichia coli APEC O78 response regulator GlrR YP_007382465.1 3431988 R 1274814 CDS YP_007382466.1 443618610 14483268 complement(3433312..3434025) 1 NC_020163.1 putative lipoprotein 3434025 14483268 APECO78_16505 Escherichia coli APEC O78 putative lipoprotein YP_007382466.1 3433312 R 1274814 CDS YP_007382467.1 443618611 14483269 complement(3434190..3435617) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; sensory histidine kinase GlrK 3435617 14483269 APECO78_16510 Escherichia coli APEC O78 sensory histidine kinase GlrK YP_007382467.1 3434190 R 1274814 CDS YP_007382468.1 443618612 14483270 complement(3436175..3440059) 1 NC_020163.1 COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain; phosphoribosylformylglycinamidine synthase 3440059 14483270 APECO78_16515 Escherichia coli APEC O78 phosphoribosylformylglycinamidine synthase YP_007382468.1 3436175 R 1274814 CDS YP_007382469.1 443618613 14483271 3440320..3441876 1 NC_020163.1 COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; membrane-bound lytic transglycosylase F 3441876 14483271 APECO78_16520 Escherichia coli APEC O78 membrane-bound lytic transglycosylase F YP_007382469.1 3440320 D 1274814 CDS YP_007382470.1 443618614 14483272 complement(3441873..3442409) 1 NC_020163.1 COG0590 Cytosine/adenosine deaminases; tRNA-specific adenosine deaminase 3442409 14483272 APECO78_16525 Escherichia coli APEC O78 tRNA-specific adenosine deaminase YP_007382470.1 3441873 R 1274814 CDS YP_007382471.1 443618615 14483273 complement(3442434..3443069) 1 NC_020163.1 COG0560 Phosphoserine phosphatase; hypothetical protein 3443069 14483273 APECO78_16530 Escherichia coli APEC O78 hypothetical protein YP_007382471.1 3442434 R 1274814 CDS YP_007382472.1 443618616 14483274 3443278..3444126 1 NC_020163.1 COG1737 Transcriptional regulators; DNA-binding transcriptional regulator 3444126 14483274 APECO78_16535 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007382472.1 3443278 D 1274814 CDS YP_007382473.1 443618617 14483275 3444182..3444442 1 NC_020163.1 COG1145 Ferredoxin; 4Fe-4S binding protein 3444442 14483275 APECO78_16540 Escherichia coli APEC O78 4Fe-4S binding protein YP_007382473.1 3444182 D 1274814 CDS YP_007382474.1 443618618 14483276 complement(3444636..3444716) 1 NC_020163.1 toxic membrane protein 3444716 14483276 APECO78_16545 Escherichia coli APEC O78 toxic membrane protein YP_007382474.1 3444636 R 1274814 CDS YP_007382475.1 443618619 14483277 complement(3445134..3445514) 1 NC_020163.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase 3445514 14483277 APECO78_16550 Escherichia coli APEC O78 4'-phosphopantetheinyl transferase YP_007382475.1 3445134 R 1274814 CDS YP_007382476.1 443618620 14483278 complement(3445514..3446245) 1 NC_020163.1 COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase 3446245 14483278 APECO78_16555 Escherichia coli APEC O78 pyridoxine 5'-phosphate synthase YP_007382476.1 3445514 R 1274814 CDS YP_007382477.1 443618621 14483279 complement(3446257..3446985) 1 NC_020163.1 COG1381 Recombinational DNA repair protein (RecF pathway); DNA repair protein RecO 3446985 14483279 APECO78_16560 Escherichia coli APEC O78 DNA repair protein RecO YP_007382477.1 3446257 R 1274814 CDS YP_007382478.1 443618622 14483280 complement(3446997..3447902) 1 NC_020163.1 COG1159 GTPase; GTP-binding protein Era 3447902 14483280 APECO78_16565 Escherichia coli APEC O78 GTP-binding protein Era YP_007382478.1 3446997 R 1274814 CDS YP_007382479.1 443618623 14483281 complement(3447899..3448579) 1 NC_020163.1 COG0571 dsRNA-specific ribonuclease; ribonuclease III 3448579 14483281 APECO78_16570 Escherichia coli APEC O78 ribonuclease III YP_007382479.1 3447899 R 1274814 CDS YP_007382480.1 443618624 14483282 complement(3448851..3449825) 1 NC_020163.1 COG0681 Signal peptidase I; signal peptidase I 3449825 14483282 APECO78_16575 Escherichia coli APEC O78 signal peptidase I YP_007382480.1 3448851 R 1274814 CDS YP_007382481.1 443618625 14483283 complement(3449841..3451640) 1 NC_020163.1 COG0481 Membrane GTPase LepA; GTP-binding protein LepA 3451640 14483283 APECO78_16580 Escherichia coli APEC O78 GTP-binding protein LepA YP_007382481.1 3449841 R 1274814 CDS YP_007382482.1 443618626 14483284 complement(3451838..3452317) 1 NC_020163.1 COG3086 Positive regulator of sigma E activity; SoxR reducing system protein RseC 3452317 14483284 APECO78_16585 Escherichia coli APEC O78 SoxR reducing system protein RseC YP_007382482.1 3451838 R 1274814 CDS YP_007382483.1 443618627 14483285 complement(3452314..3453270) 1 NC_020163.1 COG3026 Negative regulator of sigma E activity; anti-sigma E factor 3453270 14483285 APECO78_16590 Escherichia coli APEC O78 anti-sigma E factor YP_007382483.1 3452314 R 1274814 CDS YP_007382484.1 443618628 14483286 complement(3453270..3453920) 1 NC_020163.1 COG3073 Negative regulator of sigma E activity; anti-RNA polymerase sigma factor SigE 3453920 14483286 APECO78_16595 Escherichia coli APEC O78 anti-RNA polymerase sigma factor SigE YP_007382484.1 3453270 R 1274814 CDS YP_007382485.1 443618629 14483287 complement(3453953..3454528) 1 NC_020163.1 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; RNA polymerase sigma factor RpoE 3454528 14483287 APECO78_16600 Escherichia coli APEC O78 RNA polymerase sigma factor RpoE YP_007382485.1 3453953 R 1274814 CDS YP_007382486.1 443618630 14483288 complement(3454525..3454680) 1 NC_020163.1 hypothetical protein 3454680 14483288 APECO78_16605 Escherichia coli APEC O78 hypothetical protein YP_007382486.1 3454525 R 1274814 CDS YP_007382487.1 443618631 14483289 3454936..3456558 1 NC_020163.1 COG0029 Aspartate oxidase; L-aspartate oxidase 3456558 14483289 APECO78_16610 Escherichia coli APEC O78 L-aspartate oxidase YP_007382487.1 3454936 D 1274814 CDS YP_007382488.1 443618632 14483290 complement(3456543..3457280) 1 NC_020163.1 COG4123 Predicted O-methyltransferase; putative S-adenosyl-L-methionine-dependent methyltransferase 3457280 14483290 APECO78_16615 Escherichia coli APEC O78 putative S-adenosyl-L-methionine-dependent methyltransferase YP_007382488.1 3456543 R 1274814 CDS YP_007382489.1 443618633 14483291 3457412..3458746 1 NC_020163.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase SrmB 3458746 14483291 APECO78_16620 Escherichia coli APEC O78 ATP-dependent RNA helicase SrmB YP_007382489.1 3457412 D 1274814 CDS YP_007382490.1 443618634 14483292 3458752..3458904 1 NC_020163.1 hypothetical protein 3458904 14483292 APECO78_16625 Escherichia coli APEC O78 hypothetical protein YP_007382490.1 3458752 D 1274814 CDS YP_007382491.1 443618635 14483293 complement(3458955..3459836) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 3459836 14483293 APECO78_16630 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007382491.1 3458955 R 1274814 CDS YP_007382492.1 443618636 14483294 3459939..3460526 1 NC_020163.1 COG1280 Putative threonine efflux protein; cysteine/O-acetylserine exporter 3460526 14483294 APECO78_16635 Escherichia coli APEC O78 cysteine/O-acetylserine exporter YP_007382492.1 3459939 D 1274814 CDS YP_007382493.1 443618637 14483295 complement(3460582..3460965) 1 NC_020163.1 COG3445 Acid-induced glycyl radical enzyme; autonomous glycyl radical cofactor GrcA 3460965 14483295 APECO78_16640 Escherichia coli APEC O78 autonomous glycyl radical cofactor GrcA YP_007382493.1 3460582 R 1274814 CDS YP_007382494.1 443618638 14483296 3461270..3461959 1 NC_020163.1 COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase 3461959 14483296 APECO78_16645 Escherichia coli APEC O78 uracil-DNA glycosylase YP_007382494.1 3461270 D 1274814 CDS YP_007382495.1 443618639 14483297 complement(3462007..3463044) 1 NC_020163.1 COG0566 rRNA methylases; rRNA methylase 3463044 14483297 APECO78_16650 Escherichia coli APEC O78 rRNA methylase YP_007382495.1 3462007 R 1274814 CDS YP_007382496.1 443618640 14483298 3463251..3463670 1 NC_020163.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 2 3463670 14483298 APECO78_16655 Escherichia coli APEC O78 thioredoxin 2 YP_007382496.1 3463251 D 1274814 CDS YP_007382497.1 443618641 14483299 3463739..3464437 1 NC_020163.1 COG3148 Uncharacterized conserved protein; DTW domain-containing protein 3464437 14483299 APECO78_16660 Escherichia coli APEC O78 DTW domain-containing protein YP_007382497.1 3463739 D 1274814 CDS YP_007382498.1 443618642 14483300 3464469..3467129 1 NC_020163.1 COG1042 Acyl-CoA synthetase (NDP forming); protein lysine acetyltransferase 3467129 14483300 APECO78_16665 Escherichia coli APEC O78 protein lysine acetyltransferase YP_007382498.1 3464469 D 1274814 CDS YP_007382499.1 443618643 14483301 3467243..3468598 1 NC_020163.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; CDP-diacylglycerol--serine O-phosphatidyltransferase 3468598 14483301 APECO78_16670 Escherichia coli APEC O78 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_007382499.1 3467243 D 1274814 CDS YP_007382500.1 443618644 14483302 3468644..3468967 1 NC_020163.1 COG5544 Predicted periplasmic lipoprotein; lipoprotein 3468967 14483302 APECO78_16675 Escherichia coli APEC O78 lipoprotein YP_007382500.1 3468644 D 1274814 CDS YP_007382501.1 443618645 14483303 complement(3468964..3470262) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; alpha-ketoglutarate transporter 3470262 14483303 APECO78_16680 Escherichia coli APEC O78 alpha-ketoglutarate transporter YP_007382501.1 3468964 R 1274814 CDS YP_007382502.1 443618646 14483304 3470394..3470504 1 NC_020163.1 hypothetical protein 3470504 14483304 APECO78_16685 Escherichia coli APEC O78 hypothetical protein YP_007382502.1 3470394 D 1274814 CDS YP_007382503.1 443618647 14484677 complement(3476134..3478707) 1 NC_020163.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; protein disaggregation chaperone 3478707 14484677 APECO78_16690 Escherichia coli APEC O78 protein disaggregation chaperone YP_007382503.1 3476134 R 1274814 CDS YP_007382504.1 443618648 14483306 complement(3478837..3479568) 1 NC_020163.1 COG1496 Uncharacterized conserved protein; hypothetical protein 3479568 14483306 APECO78_16695 Escherichia coli APEC O78 hypothetical protein YP_007382504.1 3478837 R 1274814 CDS YP_007382505.1 443618649 14483307 complement(3479565..3480545) 1 NC_020163.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; 23S rRNA pseudouridine synthase D 3480545 14483307 APECO78_16700 Escherichia coli APEC O78 23S rRNA pseudouridine synthase D YP_007382505.1 3479565 R 1274814 CDS YP_007382506.1 443618650 14483308 3480680..3481417 1 NC_020163.1 COG4105 DNA uptake lipoprotein; outer membrane biogenesis protein BamD 3481417 14483308 APECO78_16705 Escherichia coli APEC O78 outer membrane biogenesis protein BamD YP_007382506.1 3480680 D 1274814 CDS YP_007382507.1 443618651 14483309 3481688..3482029 1 NC_020163.1 COG1544 Ribosome-associated protein Y (PSrp-1); translation inhibitor protein RaiA 3482029 14483309 APECO78_16710 Escherichia coli APEC O78 translation inhibitor protein RaiA YP_007382507.1 3481688 D 1274814 CDS YP_007382508.1 443618652 14483310 3482279..3483439 1 NC_020163.1 COG1605 Chorismate mutase; bifunctional chorismate mutase/prephenate dehydratase 3483439 14483310 APECO78_16715 Escherichia coli APEC O78 bifunctional chorismate mutase/prephenate dehydratase YP_007382508.1 3482279 D 1274814 CDS YP_007382509.1 443618653 14483311 complement(3483482..3484603) 1 NC_020163.1 COG1605 Chorismate mutase; chorismate mutase-T and prephenate dehydrogenase 3484603 14483311 APECO78_16720 Escherichia coli APEC O78 chorismate mutase-T and prephenate dehydrogenase YP_007382509.1 3483482 R 1274814 CDS YP_007382510.1 443618654 14483312 complement(3484614..3485684) 1 NC_020163.1 COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 3485684 14483312 APECO78_16725 Escherichia coli APEC O78 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase YP_007382510.1 3484614 R 1274814 CDS YP_007382511.1 443618655 14483313 3485894..3486259 1 NC_020163.1 COG0178 Excinuclease ATPase subunit; lipoprotein 3486259 14483313 APECO78_16730 Escherichia coli APEC O78 lipoprotein YP_007382511.1 3485894 D 1274814 CDS YP_007382512.1 443618656 14483314 3486409..3486927 1 NC_020163.1 hypothetical protein 3486927 14483314 APECO78_16735 Escherichia coli APEC O78 hypothetical protein YP_007382512.1 3486409 D 1274814 CDS YP_007382513.1 443618657 14483315 3486920..3488143 1 NC_020163.1 COG2199 FOG: GGDEF domain; hypothetical protein 3488143 14483315 APECO78_16740 Escherichia coli APEC O78 hypothetical protein YP_007382513.1 3486920 D 1274814 CDS YP_007382514.1 443618658 14483316 3488159..3488641 1 NC_020163.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane lipoprotein 3488641 14483316 APECO78_16745 Escherichia coli APEC O78 outer membrane lipoprotein YP_007382514.1 3488159 D 1274814 CDS YP_007382515.1 443618659 14483317 complement(3488717..3489064) 1 NC_020163.1 COG0335 Ribosomal protein L19; 50S ribosomal protein L19 3489064 14483317 APECO78_16750 Escherichia coli APEC O78 50S ribosomal protein L19 YP_007382515.1 3488717 R 1274814 CDS YP_007382516.1 443618660 14483318 complement(3489106..3489873) 1 NC_020163.1 COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 3489873 14483318 APECO78_16755 Escherichia coli APEC O78 tRNA (guanine-N(1)-)-methyltransferase YP_007382516.1 3489106 R 1274814 CDS YP_007382517.1 443618661 14483319 complement(3489904..3490452) 1 NC_020163.1 COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM 3490452 14483319 APECO78_16760 Escherichia coli APEC O78 16S rRNA-processing protein RimM YP_007382517.1 3489904 R 1274814 CDS YP_007382518.1 443618662 14483320 complement(3490471..3490719) 1 NC_020163.1 COG0228 Ribosomal protein S16; 30S ribosomal protein S16 3490719 14483320 APECO78_16765 Escherichia coli APEC O78 30S ribosomal protein S16 YP_007382518.1 3490471 R 1274814 CDS YP_007382519.1 443618663 14483321 complement(3490856..3492217) 1 NC_020163.1 COG0541 Signal recognition particle GTPase; signal recognition particle protein 3492217 14483321 APECO78_16770 Escherichia coli APEC O78 signal recognition particle protein YP_007382519.1 3490856 R 1274814 CDS YP_007382520.1 443618664 14483322 3492384..3493175 1 NC_020163.1 COG4137 ABC-type uncharacterized transport system, permease component; putative magnesium transport protein 3493175 14483322 APECO78_16775 Escherichia coli APEC O78 putative magnesium transport protein YP_007382520.1 3492384 D 1274814 CDS YP_007382521.1 443618665 14483323 3493286..3494482 1 NC_020163.1 COG4536 Putative Mg2+ and Co2+ transporter CorB; hypothetical protein 3494482 14483323 APECO78_16780 Escherichia coli APEC O78 hypothetical protein YP_007382521.1 3493286 D 1274814 CDS YP_007382522.1 443618666 14483324 complement(3494537..3495130) 1 NC_020163.1 COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein 3495130 14483324 APECO78_16785 Escherichia coli APEC O78 heat shock protein YP_007382522.1 3494537 R 1274814 CDS YP_007382523.1 443618667 14483325 3495253..3496131 1 NC_020163.1 COG0061 Predicted sugar kinase; inorganic polyphosphate/ATP-NAD kinase 3496131 14483325 APECO78_16790 Escherichia coli APEC O78 inorganic polyphosphate/ATP-NAD kinase YP_007382523.1 3495253 D 1274814 CDS YP_007382524.1 443618668 14483326 3496217..3497878 1 NC_020163.1 COG0497 ATPase involved in DNA repair; recombination and repair protein 3497878 14483326 APECO78_16795 Escherichia coli APEC O78 recombination and repair protein YP_007382524.1 3496217 D 1274814 CDS YP_007382525.1 443618669 14483327 3498027..3498368 1 NC_020163.1 COG2913 Small protein A (tmRNA-binding); outer membrane biogenesis protein BamE 3498368 14483327 APECO78_16800 Escherichia coli APEC O78 outer membrane biogenesis protein BamE YP_007382525.1 3498027 D 1274814 CDS YP_007382526.1 443618670 14483328 complement(3498430..3498720) 1 NC_020163.1 COG2914 Uncharacterized protein conserved in bacteria; hypothetical protein 3498720 14483328 APECO78_16805 Escherichia coli APEC O78 hypothetical protein YP_007382526.1 3498430 R 1274814 CDS YP_007382527.1 443618671 14483329 complement(3498710..3499147) 1 NC_020163.1 COG2867 Oligoketide cyclase/lipid transport protein; hypothetical protein 3499147 14483329 APECO78_16810 Escherichia coli APEC O78 hypothetical protein YP_007382527.1 3498710 R 1274814 CDS YP_007382528.1 443618672 14483330 3499318..3499800 1 NC_020163.1 COG0691 tmRNA-binding protein; ssrA-binding protein 3499800 14483330 APECO78_16815 Escherichia coli APEC O78 ssrA-binding protein YP_007382528.1 3499318 D 1274814 CDS YP_007382529.1 443618673 14483331 3500544..3501773 1 NC_020163.1 COG0582 Integrase; Fels-2 prophage protein 3501773 14483331 APECO78_16820 Escherichia coli APEC O78 Fels-2 prophage protein YP_007382529.1 3500544 D 1274814 CDS YP_007382530.1 443618674 14483332 3502056..3503612 1 NC_020163.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs; recombinase 3503612 14483332 APECO78_16825 Escherichia coli APEC O78 recombinase YP_007382530.1 3502056 D 1274814 CDS YP_007382531.1 443618675 14483333 3503602..3504498 1 NC_020163.1 COG1475 Predicted transcriptional regulators; ParB family protein 3504498 14483333 APECO78_16830 Escherichia coli APEC O78 ParB family protein YP_007382531.1 3503602 D 1274814 CDS YP_007382532.1 443618676 14483334 3504495..3505391 1 NC_020163.1 COG1475 Predicted transcriptional regulators; hypothetical protein 3505391 14483334 APECO78_16835 Escherichia coli APEC O78 hypothetical protein YP_007382532.1 3504495 D 1274814 CDS YP_007382533.1 443618677 14483335 3506988..3508535 1 NC_020163.1 COG0286 Type I restriction-modification system methyltransferase subunit; adenine-specific DNA-methyltransferase 3508535 14483335 APECO78_16840 Escherichia coli APEC O78 adenine-specific DNA-methyltransferase YP_007382533.1 3506988 D 1274814 CDS YP_007382534.1 443618678 14483336 3508532..3509725 1 NC_020163.1 COG0732 Restriction endonuclease S subunits; type I restriction-modification system, S subunit 3509725 14483336 APECO78_16845 Escherichia coli APEC O78 type I restriction-modification system, S subunit YP_007382534.1 3508532 D 1274814 CDS YP_007382535.1 443618679 14483337 3509784..3513023 1 NC_020163.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; HsdR family type I site-specific deoxyribonuclease 3513023 14483337 APECO78_16850 Escherichia coli APEC O78 HsdR family type I site-specific deoxyribonuclease YP_007382535.1 3509784 D 1274814 CDS YP_007382536.1 443618680 14483338 complement(3513069..3513446) 1 NC_020163.1 COG1662 Transposase and inactivated derivatives, IS1 family; IS1 transposase 3513446 14483338 APECO78_16855 Escherichia coli APEC O78 IS1 transposase YP_007382536.1 3513069 R 1274814 CDS YP_007382537.1 443618681 14483339 3514252..3515121 1 NC_020163.1 COG0666 FOG: Ankyrin repeat; hypothetical protein 3515121 14483339 APECO78_16860 Escherichia coli APEC O78 hypothetical protein YP_007382537.1 3514252 D 1274814 CDS YP_007382538.1 443618682 14483340 complement(3515092..3515997) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 3515997 14483340 APECO78_16865 Escherichia coli APEC O78 IS2 transposase TnpB YP_007382538.1 3515092 R 1274814 CDS YP_007382539.1 443618683 14483341 complement(3515955..3516320) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 3516320 14483341 APECO78_16870 Escherichia coli APEC O78 IS2 repressor TnpA YP_007382539.1 3515955 R 1274814 CDS YP_007382540.1 443618684 14483342 3516934..3518424 1 NC_020163.1 COG0366 Glycosidases; putative alpha-amylase 3518424 14483342 APECO78_16875 Escherichia coli APEC O78 putative alpha-amylase YP_007382540.1 3516934 D 1274814 CDS YP_007382541.1 443618685 14483343 3518563..3518835 1 NC_020163.1 alpha amylase 3518835 14483343 APECO78_16880 Escherichia coli APEC O78 alpha amylase YP_007382541.1 3518563 D 1274814 CDS YP_007382542.1 443618686 14483344 3519171..3520148 1 NC_020163.1 carbon starvation induced protein 3520148 14483344 APECO78_16885 Escherichia coli APEC O78 carbon starvation induced protein YP_007382542.1 3519171 D 1274814 CDS YP_007382543.1 443618687 14483345 3520168..3521436 1 NC_020163.1 COG0579 Predicted dehydrogenase; hydroxyglutarate oxidase 3521436 14483345 APECO78_16890 Escherichia coli APEC O78 hydroxyglutarate oxidase YP_007382543.1 3520168 D 1274814 CDS YP_007382544.1 443618688 14483346 3521459..3522907 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; succinate-semialdehyde dehydrogenase I 3522907 gabD 14483346 gabD Escherichia coli APEC O78 succinate-semialdehyde dehydrogenase I YP_007382544.1 3521459 D 1274814 CDS YP_007382545.1 443618689 14483347 3522921..3524201 1 NC_020163.1 COG0160 4-aminobutyrate aminotransferase and related aminotransferases; 4-aminobutyrate aminotransferase 3524201 14483347 APECO78_16900 Escherichia coli APEC O78 4-aminobutyrate aminotransferase YP_007382545.1 3522921 D 1274814 CDS YP_007382546.1 443618690 14483348 3524439..3525839 1 NC_020163.1 COG1113 Gamma-aminobutyrate permease and related permeases; gamma-aminobutyrate transporter 3525839 14483348 APECO78_16905 Escherichia coli APEC O78 gamma-aminobutyrate transporter YP_007382546.1 3524439 D 1274814 CDS YP_007382547.1 443618691 14483349 3525860..3526522 1 NC_020163.1 COG1802 Transcriptional regulators; GntR family transcriptional regulator 3526522 14483349 APECO78_16910 Escherichia coli APEC O78 GntR family transcriptional regulator YP_007382547.1 3525860 D 1274814 CDS YP_007382548.1 443618692 14483350 complement(3526523..3526972) 1 NC_020163.1 COG1652 Uncharacterized protein containing LysM domain; LysM domain/BON superfamily protein 3526972 14483350 APECO78_16915 Escherichia coli APEC O78 LysM domain/BON superfamily protein YP_007382548.1 3526523 R 1274814 CDS YP_007382549.1 443618693 14483351 complement(3527056..3527214) 1 NC_020163.1 COG0401 Uncharacterized homolog of Blt101; hypothetical protein 3527214 14483351 APECO78_16920 Escherichia coli APEC O78 hypothetical protein YP_007382549.1 3527056 R 1274814 CDS YP_007382550.1 443618694 14483352 3527397..3527696 1 NC_020163.1 COG0640 Predicted transcriptional regulators; DNA-binding transcriptional regulator 3527696 14483352 APECO78_16925 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007382550.1 3527397 D 1274814 CDS YP_007382551.1 443618695 14483353 3527706..3528230 1 NC_020163.1 COG0607 Rhodanese-related sulfurtransferase; inner membrane protein with hydrolase activity 3528230 14483353 APECO78_16930 Escherichia coli APEC O78 inner membrane protein with hydrolase activity YP_007382551.1 3527706 D 1274814 CDS YP_007382552.1 443618696 14483354 complement(3528277..3528681) 1 NC_020163.1 COG2916 DNA-binding protein H-NS; DNA binding protein 3528681 14483354 APECO78_16935 Escherichia coli APEC O78 DNA binding protein YP_007382552.1 3528277 R 1274814 CDS YP_007382553.1 443618697 14483355 3529349..3529798 1 NC_020163.1 hypothetical protein 3529798 14483355 APECO78_16940 Escherichia coli APEC O78 hypothetical protein YP_007382553.1 3529349 D 1274814 CDS YP_007382554.1 443618698 14483356 complement(3529835..3530179) 1 NC_020163.1 hypothetical protein 3530179 14483356 APECO78_16945 Escherichia coli APEC O78 hypothetical protein YP_007382554.1 3529835 R 1274814 CDS YP_007382555.1 443618699 14483357 3530331..3530660 1 NC_020163.1 COG4575 Uncharacterized conserved protein; hypothetical protein 3530660 14483357 APECO78_16950 Escherichia coli APEC O78 hypothetical protein YP_007382555.1 3530331 D 1274814 CDS YP_007382556.1 443618700 14483358 3530908..3531153 1 NC_020163.1 COG0695 Glutaredoxin and related proteins; glutaredoxin-like protein 3531153 14483358 APECO78_16955 Escherichia coli APEC O78 glutaredoxin-like protein YP_007382556.1 3530908 D 1274814 CDS YP_007382557.1 443618701 14483359 3531150..3531560 1 NC_020163.1 COG1780 Protein involved in ribonucleotide reduction; ribonucleotide reductase stimulatory protein 3531560 14483359 APECO78_16960 Escherichia coli APEC O78 ribonucleotide reductase stimulatory protein YP_007382557.1 3531150 D 1274814 CDS YP_007382558.1 443618702 14483360 3531533..3533677 1 NC_020163.1 COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 3533677 14483360 APECO78_16965 Escherichia coli APEC O78 ribonucleotide-diphosphate reductase subunit alpha YP_007382558.1 3531533 D 1274814 CDS YP_007382559.1 443618703 14483361 3533687..3534646 1 NC_020163.1 COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 3534646 nrdF 14483361 nrdF Escherichia coli APEC O78 ribonucleotide-diphosphate reductase subunit beta YP_007382559.1 3533687 D 1274814 CDS YP_007382560.1 443618704 14483362 3535001..3536203 1 NC_020163.1 COG4175 ABC-type proline/glycine betaine transport system, ATPase component; Glycine betaine/L-proline transport ATP-binding protein 3536203 14483362 APECO78_16975 Escherichia coli APEC O78 Glycine betaine/L-proline transport ATP-binding protein YP_007382560.1 3535001 D 1274814 CDS YP_007382561.1 443618705 14483363 3536196..3537260 1 NC_020163.1 COG4176 ABC-type proline/glycine betaine transport system, permease component; glycine betaine transporter membrane protein 3537260 14483363 APECO78_16980 Escherichia coli APEC O78 glycine betaine transporter membrane protein YP_007382561.1 3536196 D 1274814 CDS YP_007382562.1 443618706 14483364 3537318..3538310 1 NC_020163.1 COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components; glycine betaine transporter periplasmic subunit 3538310 14483364 APECO78_16985 Escherichia coli APEC O78 glycine betaine transporter periplasmic subunit YP_007382562.1 3537318 D 1274814 CDS YP_007382563.1 443618707 14483365 3538602..3539786 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily transporter 3539786 14483365 APECO78_16990 Escherichia coli APEC O78 major facilitator superfamily transporter YP_007382563.1 3538602 D 1274814 CDS YP_007382564.1 443618708 14483366 3539910..3540647 1 NC_020163.1 COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); branched chain amino acid exporter (LIV-E) family protein 3540647 14483366 APECO78_16995 Escherichia coli APEC O78 branched chain amino acid exporter (LIV-E) family protein YP_007382564.1 3539910 D 1274814 CDS YP_007382565.1 443618709 14483367 3540637..3540972 1 NC_020163.1 L-valine exporter 3540972 14483367 APECO78_17000 Escherichia coli APEC O78 L-valine exporter YP_007382565.1 3540637 D 1274814 CDS YP_007382566.1 443618710 14483368 3541063..3541593 1 NC_020163.1 COG1846 Transcriptional regulators; transcriptional repressor MprA 3541593 14483368 APECO78_17005 Escherichia coli APEC O78 transcriptional repressor MprA YP_007382566.1 3541063 D 1274814 CDS YP_007382567.1 443618711 14483369 3541720..3542892 1 NC_020163.1 COG1566 Multidrug resistance efflux pump; multidrug efflux system protein EmrA 3542892 14483369 APECO78_17010 Escherichia coli APEC O78 multidrug efflux system protein EmrA YP_007382567.1 3541720 D 1274814 CDS YP_007382568.1 443618712 14483370 3542909..3544447 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; membrane translocase 3544447 14483370 APECO78_17015 Escherichia coli APEC O78 membrane translocase YP_007382568.1 3542909 D 1274814 CDS YP_007382569.1 443618713 14483371 complement(3544511..3545026) 1 NC_020163.1 COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase 3545026 14483371 APECO78_17020 Escherichia coli APEC O78 S-ribosylhomocysteinase YP_007382569.1 3544511 R 1274814 CDS YP_007382570.1 443618714 14483372 complement(3545175..3546731) 1 NC_020163.1 COG2918 Gamma-glutamylcysteine synthetase; glutamate--cysteine ligase 3546731 14483372 APECO78_17025 Escherichia coli APEC O78 glutamate--cysteine ligase YP_007382570.1 3545175 R 1274814 CDS YP_007382571.1 443618715 14483373 complement(3546804..3547232) 1 NC_020163.1 COG1238 Predicted membrane protein; hypothetical protein 3547232 14483373 APECO78_17030 Escherichia coli APEC O78 hypothetical protein YP_007382571.1 3546804 R 1274814 CDS YP_007382572.1 443618716 14483374 complement(3547229..3547795) 1 NC_020163.1 COG0637 Predicted phosphatase/phosphohexomutase; fructose-1-P/6-phosphogluconate phosphatase 3547795 14483374 APECO78_17035 Escherichia coli APEC O78 fructose-1-P/6-phosphogluconate phosphatase YP_007382572.1 3547229 R 1274814 CDS YP_007382573.1 443618717 14484644 complement(3549253..3549438) 1 NC_020163.1 COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator 3549438 14484644 APECO78_17040 Escherichia coli APEC O78 carbon storage regulator YP_007382573.1 3549253 R 1274814 CDS YP_007382574.1 443618718 14483376 complement(3549673..3552303) 1 NC_020163.1 COG0013 Alanyl-tRNA synthetase; alanyl-tRNA ligase 3552303 alaS 14483376 alaS Escherichia coli APEC O78 alanyl-tRNA ligase YP_007382574.1 3549673 R 1274814 CDS YP_007382575.1 443618719 14483377 3552253..3552390 1 NC_020163.1 hypothetical protein 3552390 14483377 APECO78_17050 Escherichia coli APEC O78 hypothetical protein YP_007382575.1 3552253 D 1274814 CDS YP_007382576.1 443618720 14483378 complement(3552431..3552931) 1 NC_020163.1 COG2137 Uncharacterized protein conserved in bacteria; recombination regulator RecX 3552931 recX 14483378 recX Escherichia coli APEC O78 recombination regulator RecX YP_007382576.1 3552431 R 1274814 CDS YP_007382577.1 443618721 14483379 complement(3553174..3554235) 1 NC_020163.1 COG0468 RecA/RadA recombinase; recombinase A 3554235 14483379 APECO78_17060 Escherichia coli APEC O78 recombinase A YP_007382577.1 3553174 R 1274814 CDS YP_007382578.1 443618722 14483380 complement(3554315..3554812) 1 NC_020163.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced); competence damage-inducible protein A 3554812 14483380 APECO78_17065 Escherichia coli APEC O78 competence damage-inducible protein A YP_007382578.1 3554315 R 1274814 CDS YP_007382579.1 443618723 14483381 complement(3554957..3556042) 1 NC_020163.1 COG2951 Membrane-bound lytic murein transglycosylase B; murein hydrolase B 3556042 14483381 APECO78_17070 Escherichia coli APEC O78 murein hydrolase B YP_007382579.1 3554957 R 1274814 CDS YP_007382580.1 443618724 14483382 3556298..3556861 1 NC_020163.1 COG3730 Phosphotransferase system sorbitol-specific component IIC; glucitol/sorbitol permease IIC component 3556861 14483382 APECO78_17075 Escherichia coli APEC O78 glucitol/sorbitol permease IIC component YP_007382580.1 3556298 D 1274814 CDS YP_007382581.1 443618725 14483383 3556858..3557817 1 NC_020163.1 COG3732 Phosphotransferase system sorbitol-specific component IIBC; PTS system glucitol/sorbitol-specific transporter subunit IIB 3557817 srlE 14483383 srlE Escherichia coli APEC O78 PTS system glucitol/sorbitol-specific transporter subunit IIB YP_007382581.1 3556858 D 1274814 CDS YP_007382582.1 443618726 14483384 3557828..3558199 1 NC_020163.1 COG3731 Phosphotransferase system sorbitol-specific component IIA; PTS system glucitol/sorbitol-specific transporter subunit IIA 3558199 14483384 APECO78_17085 Escherichia coli APEC O78 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_007382582.1 3557828 D 1274814 CDS YP_007382583.1 443618727 14483385 3558203..3558982 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); sorbitol-6-phosphate dehydrogenase 3558982 14483385 APECO78_17090 Escherichia coli APEC O78 sorbitol-6-phosphate dehydrogenase YP_007382583.1 3558203 D 1274814 CDS YP_007382584.1 443618728 14483386 3559087..3559446 1 NC_020163.1 COG4578 Glucitol operon activator; DNA-binding transcriptional activator GutM 3559446 14483386 APECO78_17095 Escherichia coli APEC O78 DNA-binding transcriptional activator GutM YP_007382584.1 3559087 D 1274814 CDS YP_007382585.1 443618729 14483387 3559513..3560286 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor SrlR 3560286 14483387 APECO78_17100 Escherichia coli APEC O78 DNA-binding transcriptional repressor SrlR YP_007382585.1 3559513 D 1274814 CDS YP_007382586.1 443618730 14483388 3560279..3561244 1 NC_020163.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 3561244 gutQ 14483388 gutQ Escherichia coli APEC O78 D-arabinose 5-phosphate isomerase YP_007382586.1 3560279 D 1274814 CDS YP_007382587.1 443618731 14483389 complement(3561241..3562755) 1 NC_020163.1 COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; anaerobic nitric oxide reductase transcription regulator 3562755 14483389 APECO78_17110 Escherichia coli APEC O78 anaerobic nitric oxide reductase transcription regulator YP_007382587.1 3561241 R 1274814 CDS YP_007382588.1 443618732 14483390 3562942..3564381 1 NC_020163.1 COG0426 Uncharacterized flavoproteins; anaerobic nitric oxide reductase flavorubredoxin 3564381 14483390 APECO78_17115 Escherichia coli APEC O78 anaerobic nitric oxide reductase flavorubredoxin YP_007382588.1 3562942 D 1274814 CDS YP_007382589.1 443618733 14483391 3564378..3565511 1 NC_020163.1 COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; NADH:flavorubredoxin oxidoreductase 3565511 14483391 APECO78_17120 Escherichia coli APEC O78 NADH:flavorubredoxin oxidoreductase YP_007382589.1 3564378 D 1274814 CDS YP_007382590.1 443618734 14483392 complement(3565639..3567891) 1 NC_020163.1 COG0068 Hydrogenase maturation factor; carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases 3567891 14483392 APECO78_17125 Escherichia coli APEC O78 carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases YP_007382590.1 3565639 R 1274814 CDS YP_007382591.1 443618735 14483393 complement(3568044..3568571) 1 NC_020163.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; electron transport protein HydN 3568571 14483393 APECO78_17130 Escherichia coli APEC O78 electron transport protein HydN YP_007382591.1 3568044 R 1274814 CDS YP_007382592.1 443618736 14483394 complement(3568720..3569733) 1 NC_020163.1 COG1609 Transcriptional regulators; DNA-binding transcriptional repressor 3569733 14483394 APECO78_17135 Escherichia coli APEC O78 DNA-binding transcriptional repressor YP_007382592.1 3568720 R 1274814 CDS YP_007382593.1 443618737 14483395 3569990..3571447 1 NC_020163.1 COG1264 Phosphotransferase system IIB components; PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC 3571447 14483395 APECO78_17140 Escherichia coli APEC O78 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC YP_007382593.1 3569990 D 1274814 CDS YP_007382594.1 443618738 14483396 3571456..3572880 1 NC_020163.1 COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; cryptic 6-phospho-beta-glucosidase 3572880 14483396 APECO78_17145 Escherichia coli APEC O78 cryptic 6-phospho-beta-glucosidase YP_007382594.1 3571456 D 1274814 CDS YP_007382595.1 443618739 14483397 complement(3572994..3573413) 1 NC_020163.1 COG5499 Predicted transcription regulator containing HTH domain; HTH-type transcriptional regulator ygjM 3573413 14483397 APECO78_17150 Escherichia coli APEC O78 HTH-type transcriptional regulator ygjM YP_007382595.1 3572994 R 1274814 CDS YP_007382596.1 443618740 14483398 complement(3573410..3573721) 1 NC_020163.1 COG4680 Uncharacterized protein conserved in bacteria; hypothetical protein 3573721 14483398 APECO78_17155 Escherichia coli APEC O78 hypothetical protein YP_007382596.1 3573410 R 1274814 CDS YP_007382597.1 443618741 14483399 complement(3573895..3574656) 1 NC_020163.1 periplasmic or exported protein 3574656 14483399 APECO78_17160 Escherichia coli APEC O78 periplasmic or exported protein YP_007382597.1 3573895 R 1274814 CDS YP_007382598.1 443618742 14483400 complement(3574681..3575151) 1 NC_020163.1 COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 3 maturation protease 3575151 14483400 APECO78_17165 Escherichia coli APEC O78 hydrogenase 3 maturation protease YP_007382598.1 3574681 R 1274814 CDS YP_007382599.1 443618743 14483401 complement(3575144..3575554) 1 NC_020163.1 formate hydrogenlyase maturation protein HycH 3575554 14483401 APECO78_17170 Escherichia coli APEC O78 formate hydrogenlyase maturation protein HycH YP_007382599.1 3575144 R 1274814 CDS YP_007382600.1 443618744 14483402 complement(3575551..3576318) 1 NC_020163.1 COG3260 Ni,Fe-hydrogenase III small subunit; hydrogenase 3 and formate hydrogenase complex, HycG subunit 3576318 14483402 APECO78_17175 Escherichia coli APEC O78 hydrogenase 3 and formate hydrogenase complex, HycG subunit YP_007382600.1 3575551 R 1274814 CDS YP_007382601.1 443618745 14483403 complement(3576318..3576860) 1 NC_020163.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); formate hydrogenlyase complex iron-sulfur subunit 3576860 14483403 APECO78_17180 Escherichia coli APEC O78 formate hydrogenlyase complex iron-sulfur subunit YP_007382601.1 3576318 R 1274814 CDS YP_007382602.1 443618746 14483404 complement(3576870..3578579) 1 NC_020163.1 COG3262 Ni,Fe-hydrogenase III component G; Subunit 5 formate hydrogenlyase 3578579 14483404 APECO78_17185 Escherichia coli APEC O78 Subunit 5 formate hydrogenlyase YP_007382602.1 3576870 R 1274814 CDS YP_007382603.1 443618747 14483405 complement(3578597..3579520) 1 NC_020163.1 COG0650 Formate hydrogenlyase subunit 4; formate hydrogenlyase subunit 4 3579520 14483405 APECO78_17190 Escherichia coli APEC O78 formate hydrogenlyase subunit 4 YP_007382603.1 3578597 R 1274814 CDS YP_007382604.1 443618748 14483406 complement(3579523..3581349) 1 NC_020163.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit; formate hydrogenlyase subunit 3581349 14483406 APECO78_17195 Escherichia coli APEC O78 formate hydrogenlyase subunit YP_007382604.1 3579523 R 1274814 CDS YP_007382605.1 443618749 14483407 complement(3581346..3581957) 1 NC_020163.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; formate hydrogenlyase subunit 2 3581957 14483407 APECO78_17200 Escherichia coli APEC O78 formate hydrogenlyase subunit 2 YP_007382605.1 3581346 R 1274814 CDS YP_007382606.1 443618750 14483408 3581858..3582166 1 NC_020163.1 hypothetical protein 3582166 14483408 APECO78_17205 Escherichia coli APEC O78 hypothetical protein YP_007382606.1 3581858 D 1274814 CDS YP_007382607.1 443618751 14483409 complement(3582082..3582543) 1 NC_020163.1 formate hydrogenlyase regulatory protein HycA 3582543 14483409 APECO78_17210 Escherichia coli APEC O78 formate hydrogenlyase regulatory protein HycA YP_007382607.1 3582082 R 1274814 CDS YP_007382608.1 443618752 14483410 3582755..3583105 1 NC_020163.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein 3583105 hypA 14483410 hypA Escherichia coli APEC O78 hydrogenase nickel incorporation protein YP_007382608.1 3582755 D 1274814 CDS YP_007382609.1 443618753 14483411 3583109..3583981 1 NC_020163.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; guanine-nucleotide binding protein in formate-hydrogenlyase system 3583981 14483411 APECO78_17220 Escherichia coli APEC O78 guanine-nucleotide binding protein in formate-hydrogenlyase system YP_007382609.1 3583109 D 1274814 CDS YP_007382610.1 443618754 14483412 3583972..3584244 1 NC_020163.1 COG0298 Hydrogenase maturation factor; hydrogenase assembly chaperone 3584244 14483412 APECO78_17225 Escherichia coli APEC O78 hydrogenase assembly chaperone YP_007382610.1 3583972 D 1274814 CDS YP_007382611.1 443618755 14483413 3584244..3585365 1 NC_020163.1 COG0409 Hydrogenase maturation factor; hydrogenase isoenzymes formation protein HypD 3585365 14483413 APECO78_17230 Escherichia coli APEC O78 hydrogenase isoenzymes formation protein HypD YP_007382611.1 3584244 D 1274814 CDS YP_007382612.1 443618756 14483414 3585362..3586372 1 NC_020163.1 COG0309 Hydrogenase maturation factor; carbamoyl dehydratase HypE 3586372 14483414 APECO78_17235 Escherichia coli APEC O78 carbamoyl dehydratase HypE YP_007382612.1 3585362 D 1274814 CDS YP_007382613.1 443618757 14483415 3586446..3588524 1 NC_020163.1 COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; formate hydrogenlyase transcriptional activator FhlA 3588524 14483415 APECO78_17240 Escherichia coli APEC O78 formate hydrogenlyase transcriptional activator FhlA YP_007382613.1 3586446 D 1274814 CDS YP_007382614.1 443618758 14483416 complement(3588561..3588914) 1 NC_020163.1 hypothetical protein 3588914 14483416 APECO78_17245 Escherichia coli APEC O78 hypothetical protein YP_007382614.1 3588561 R 1274814 CDS YP_007382615.1 443618759 14483417 complement(3588991..3589125) 1 NC_020163.1 hypothetical protein 3589125 14483417 APECO78_17250 Escherichia coli APEC O78 hypothetical protein YP_007382615.1 3588991 R 1274814 CDS YP_007382616.1 443618760 14483418 3589201..3591762 1 NC_020163.1 COG0249 Mismatch repair ATPase (MutS family); DNA mismatch repair protein MutS 3591762 14483418 APECO78_17255 Escherichia coli APEC O78 DNA mismatch repair protein MutS YP_007382616.1 3589201 D 1274814 CDS YP_007382617.1 443618761 14483419 3591868..3592524 1 NC_020163.1 COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; serine/threonine-specific protein phosphatase 2 3592524 14483419 APECO78_17260 Escherichia coli APEC O78 serine/threonine-specific protein phosphatase 2 YP_007382617.1 3591868 D 1274814 CDS YP_007382618.1 443618762 14483420 complement(3592575..3593342) 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 3593342 14483420 APECO78_17265 Escherichia coli APEC O78 DeoR family transcriptional regulator YP_007382618.1 3592575 R 1274814 CDS YP_007382619.1 443618763 14483421 3593538..3594446 1 NC_020163.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; dehydrogenase 3594446 14483421 APECO78_17270 Escherichia coli APEC O78 dehydrogenase YP_007382619.1 3593538 D 1274814 CDS YP_007382620.1 443618764 14483422 3594443..3595705 1 NC_020163.1 COG3395 Uncharacterized protein conserved in bacteria; hypothetical protein 3595705 14483422 APECO78_17275 Escherichia coli APEC O78 hypothetical protein YP_007382620.1 3594443 D 1274814 CDS YP_007382621.1 443618765 14483423 3595702..3596340 1 NC_020163.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; aldolase 3596340 14483423 APECO78_17280 Escherichia coli APEC O78 aldolase YP_007382621.1 3595702 D 1274814 CDS YP_007382622.1 443618766 14483424 3596345..3597121 1 NC_020163.1 COG3622 Hydroxypyruvate isomerase; hypothetical protein 3597121 14483424 APECO78_17285 Escherichia coli APEC O78 hypothetical protein YP_007382622.1 3596345 D 1274814 CDS YP_007382623.1 443618767 14483425 3597210..3598574 1 NC_020163.1 COG2610 H+/gluconate symporter and related permeases; putative transporter 3598574 14483425 APECO78_17290 Escherichia coli APEC O78 putative transporter YP_007382623.1 3597210 D 1274814 CDS YP_007382624.1 443618768 14483426 complement(3598668..3599660) 1 NC_020163.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoS 3599660 14483426 APECO78_17295 Escherichia coli APEC O78 RNA polymerase sigma factor RpoS YP_007382624.1 3598668 R 1274814 CDS YP_007382625.1 443618769 14483427 complement(3599723..3600862) 1 NC_020163.1 COG0739 Membrane proteins related to metalloendopeptidases; lipoprotein NlpD 3600862 nlpD 14483427 nlpD Escherichia coli APEC O78 lipoprotein NlpD YP_007382625.1 3599723 R 1274814 CDS YP_007382626.1 443618770 14483428 complement(3601002..3601628) 1 NC_020163.1 COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase 3601628 14483428 APECO78_17305 Escherichia coli APEC O78 protein-L-isoaspartate O-methyltransferase YP_007382626.1 3601002 R 1274814 CDS YP_007382627.1 443618771 14483429 complement(3601622..3602383) 1 NC_020163.1 COG0496 Predicted acid phosphatase; stationary phase survival protein SurE 3602383 14483429 APECO78_17310 Escherichia coli APEC O78 stationary phase survival protein SurE YP_007382627.1 3601622 R 1274814 CDS YP_007382628.1 443618772 14483430 complement(3602364..3603413) 1 NC_020163.1 COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D 3603413 14483430 APECO78_17315 Escherichia coli APEC O78 tRNA pseudouridine synthase D YP_007382628.1 3602364 R 1274814 CDS YP_007382629.1 443618773 14483431 complement(3603410..3603889) 1 NC_020163.1 COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 3603889 14483431 APECO78_17320 Escherichia coli APEC O78 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_007382629.1 3603410 R 1274814 CDS YP_007382630.1 443618774 14483432 complement(3603889..3604599) 1 NC_020163.1 COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3604599 ispD 14483432 ispD Escherichia coli APEC O78 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_007382630.1 3603889 R 1274814 CDS YP_007382631.1 443618775 14483433 complement(3604618..3604929) 1 NC_020163.1 COG2919 Septum formation initiator; cell division protein FtsB 3604929 14483433 APECO78_17330 Escherichia coli APEC O78 cell division protein FtsB YP_007382631.1 3604618 R 1274814 CDS YP_007382632.1 443618776 14483434 complement(3605123..3605446) 1 NC_020163.1 COG0665 Glycine/D-amino acid oxidases (deaminating); hypothetical protein 3605446 14483434 APECO78_17335 Escherichia coli APEC O78 hypothetical protein YP_007382632.1 3605123 R 1274814 CDS YP_007382633.1 443618777 14483435 complement(3605496..3606101) 1 NC_020163.1 COG0529 Adenylylsulfate kinase and related kinases; adenylylsulfate kinase 3606101 14483435 APECO78_17340 Escherichia coli APEC O78 adenylylsulfate kinase YP_007382633.1 3605496 R 1274814 CDS YP_007382634.1 443618778 14483436 complement(3606101..3607528) 1 NC_020163.1 COG2895 GTPases - Sulfate adenylate transferase subunit 1; sulfate adenylyltransferase 3607528 14483436 APECO78_17345 Escherichia coli APEC O78 sulfate adenylyltransferase YP_007382634.1 3606101 R 1274814 CDS YP_007382635.1 443618779 14483437 complement(3607530..3608438) 1 NC_020163.1 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; sulfate adenylyltransferase subunit 2 3608438 14483437 APECO78_17350 Escherichia coli APEC O78 sulfate adenylyltransferase subunit 2 YP_007382635.1 3607530 R 1274814 CDS YP_007382636.1 443618780 14483438 3608690..3609727 1 NC_020163.1 COG2234 Predicted aminopeptidases; alkaline phosphatase isozyme conversion aminopeptidase 3609727 14483438 APECO78_17355 Escherichia coli APEC O78 alkaline phosphatase isozyme conversion aminopeptidase YP_007382636.1 3608690 D 1274814 CDS YP_007382637.1 443618781 14483439 complement(3609874..3610053) 1 NC_020163.1 hypothetical protein 3610053 14483439 APECO78_17360 Escherichia coli APEC O78 hypothetical protein YP_007382637.1 3609874 R 1274814 CDS YP_007382638.1 443618782 14483440 3610052..3610411 1 NC_020163.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); hypothetical protein 3610411 14483440 APECO78_17365 Escherichia coli APEC O78 hypothetical protein YP_007382638.1 3610052 D 1274814 CDS YP_007382639.1 443618783 14483441 complement(3610483..3610776) 1 NC_020163.1 ssRNA endonuclease 3610776 14483441 APECO78_17370 Escherichia coli APEC O78 ssRNA endonuclease YP_007382639.1 3610483 R 1274814 CDS YP_007382640.1 443618784 14483442 complement(3610773..3611696) 1 NC_020163.1 COG1518 Uncharacterized protein predicted to be involved in DNA repair; CRISPR-associated protein Cas1 3611696 14483442 APECO78_17375 Escherichia coli APEC O78 CRISPR-associated protein Cas1 YP_007382640.1 3610773 R 1274814 CDS YP_007382641.1 443618785 14483443 complement(3611693..3612343) 1 NC_020163.1 hypothetical protein 3612343 14483443 APECO78_17380 Escherichia coli APEC O78 hypothetical protein YP_007382641.1 3611693 R 1274814 CDS YP_007382642.1 443618786 14483444 complement(3612325..3613071) 1 NC_020163.1 hypothetical protein 3613071 14483444 APECO78_17385 Escherichia coli APEC O78 hypothetical protein YP_007382642.1 3612325 R 1274814 CDS YP_007382643.1 443618787 14483445 complement(3613082..3614137) 1 NC_020163.1 hypothetical protein 3614137 14483445 APECO78_17390 Escherichia coli APEC O78 hypothetical protein YP_007382643.1 3613082 R 1274814 CDS YP_007382644.1 443618788 14483446 complement(3614149..3614685) 1 NC_020163.1 hypothetical protein 3614685 14483446 APECO78_17395 Escherichia coli APEC O78 hypothetical protein YP_007382644.1 3614149 R 1274814 CDS YP_007382645.1 443618789 14483447 complement(3614682..3616244) 1 NC_020163.1 hypothetical protein 3616244 14483447 APECO78_17400 Escherichia coli APEC O78 hypothetical protein YP_007382645.1 3614682 R 1274814 CDS YP_007382646.1 443618790 14483448 complement(3616342..3618582) 1 NC_020163.1 COG1203 Predicted helicases; helicase 3618582 14483448 APECO78_17405 Escherichia coli APEC O78 helicase YP_007382646.1 3616342 R 1274814 CDS YP_007382647.1 443618791 14483449 complement(3618622..3619041) 1 NC_020163.1 CRISPR-associated helicase Cas3 3619041 14483449 APECO78_17410 Escherichia coli APEC O78 CRISPR-associated helicase Cas3 YP_007382647.1 3618622 R 1274814 CDS YP_007382648.1 443618792 14483450 complement(3619235..3619387) 1 NC_020163.1 small toxic membrane polypeptide 3619387 14483450 APECO78_17415 Escherichia coli APEC O78 small toxic membrane polypeptide YP_007382648.1 3619235 R 1274814 CDS YP_007382649.1 443618793 14483451 complement(3619652..3620386) 1 NC_020163.1 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes; phosphoadenosine phosphosulfate reductase 3620386 14483451 APECO78_17420 Escherichia coli APEC O78 phosphoadenosine phosphosulfate reductase YP_007382649.1 3619652 R 1274814 CDS YP_007382650.1 443618794 14483452 complement(3620460..3622172) 1 NC_020163.1 COG0155 Sulfite reductase, beta subunit (hemoprotein); sulfite reductase subunit beta 3622172 14483452 APECO78_17425 Escherichia coli APEC O78 sulfite reductase subunit beta YP_007382650.1 3620460 R 1274814 CDS YP_007382651.1 443618795 14483453 complement(3622172..3623971) 1 NC_020163.1 COG0369 Sulfite reductase, alpha subunit (flavoprotein); sulfite reductase subunit alpha 3623971 cysJ 14483453 cysJ Escherichia coli APEC O78 sulfite reductase subunit alpha YP_007382651.1 3622172 R 1274814 CDS YP_007382652.1 443618796 14483454 3624290..3624652 1 NC_020163.1 COG0720 6-pyruvoyl-tetrahydropterin synthase; putative 6-pyruvoyl tetrahydrobiopterin synthase 3624652 14483454 APECO78_17435 Escherichia coli APEC O78 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_007382652.1 3624290 D 1274814 CDS YP_007382653.1 443618797 14483455 3624730..3626001 1 NC_020163.1 COG0644 Dehydrogenases (flavoproteins); oxidoreductase with FAD/NAD(P)-binding domain 3626001 14483455 APECO78_17440 Escherichia coli APEC O78 oxidoreductase with FAD/NAD(P)-binding domain YP_007382653.1 3624730 D 1274814 CDS YP_007382654.1 443618798 14483456 3625992..3626252 1 NC_020163.1 COG2440 Ferredoxin-like protein; 4Fe-4S binding protein 3626252 14483456 APECO78_17445 Escherichia coli APEC O78 4Fe-4S binding protein YP_007382654.1 3625992 D 1274814 CDS YP_007382655.1 443618799 14483457 3626269..3626844 1 NC_020163.1 COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding); anti-terminator regulatory protein 3626844 14483457 APECO78_17450 Escherichia coli APEC O78 anti-terminator regulatory protein YP_007382655.1 3626269 D 1274814 CDS YP_007382656.1 443618800 14483458 complement(3626992..3627852) 1 NC_020163.1 COG2025 Electron transfer flavoprotein, alpha subunit; flavoprotein 3627852 14483458 APECO78_17455 Escherichia coli APEC O78 flavoprotein YP_007382656.1 3626992 R 1274814 CDS YP_007382657.1 443618801 14483459 complement(3627849..3628628) 1 NC_020163.1 COG2086 Electron transfer flavoprotein, beta subunit; putative flavoprotein 3628628 14483459 APECO78_17460 Escherichia coli APEC O78 putative flavoprotein YP_007382657.1 3627849 R 1274814 CDS YP_007382658.1 443618802 14483460 complement(3628606..3629943) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 3629943 14483460 APECO78_17465 Escherichia coli APEC O78 transporter YP_007382658.1 3628606 R 1274814 CDS YP_007382659.1 443618803 14483461 complement(3630037..3631491) 1 NC_020163.1 COG0277 FAD/FMN-containing dehydrogenases; FAD containing dehydrogenase 3631491 14483461 APECO78_17470 Escherichia coli APEC O78 FAD containing dehydrogenase YP_007382659.1 3630037 R 1274814 CDS YP_007382660.1 443618804 14483462 complement(3631561..3632346) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); putative deoxygluconate dehydrogenase 3632346 14483462 APECO78_17475 Escherichia coli APEC O78 putative deoxygluconate dehydrogenase YP_007382660.1 3631561 R 1274814 CDS YP_007382661.1 443618805 14483463 3632665..3633942 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 3633942 14483463 APECO78_17480 Escherichia coli APEC O78 transporter YP_007382661.1 3632665 D 1274814 CDS YP_007382662.1 443618806 14483464 3633969..3635447 1 NC_020163.1 COG1070 Sugar (pentulose and hexulose) kinases; putative kinase 3635447 14483464 APECO78_17485 Escherichia coli APEC O78 putative kinase YP_007382662.1 3633969 D 1274814 CDS YP_007382663.1 443618807 14483465 complement(3636941..3637612) 1 NC_020163.1 COG0602 Organic radical activating enzymes; hypothetical protein 3637612 14483465 APECO78_17490 Escherichia coli APEC O78 hypothetical protein YP_007382663.1 3636941 R 1274814 CDS YP_007382664.1 443618808 14483466 3637751..3637891 1 NC_020163.1 hypothetical protein 3637891 14483466 APECO78_17495 Escherichia coli APEC O78 hypothetical protein YP_007382664.1 3637751 D 1274814 CDS YP_007382665.1 443618809 14483467 3637905..3638777 1 NC_020163.1 COG1512 Beta-propeller domains of methanol dehydrogenase type; hypothetical protein 3638777 14483467 APECO78_17500 Escherichia coli APEC O78 hypothetical protein YP_007382665.1 3637905 D 1274814 CDS YP_007382666.1 443618810 14483468 3638752..3638853 1 NC_020163.1 hypothetical protein 3638853 14483468 APECO78_17505 Escherichia coli APEC O78 hypothetical protein YP_007382666.1 3638752 D 1274814 CDS YP_007382667.1 443618811 14483469 complement(3638837..3640135) 1 NC_020163.1 COG0148 Enolase; enolase 3640135 14483469 APECO78_17510 Escherichia coli APEC O78 enolase YP_007382667.1 3638837 R 1274814 CDS YP_007382668.1 443618812 14483470 complement(3640223..3641860) 1 NC_020163.1 COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase 3641860 14483470 APECO78_17515 Escherichia coli APEC O78 CTP synthetase YP_007382668.1 3640223 R 1274814 CDS YP_007382669.1 443618813 14483471 complement(3642088..3642879) 1 NC_020163.1 COG1694 Predicted pyrophosphatase; nucleoside triphosphate pyrophosphohydrolase 3642879 mazG 14483471 mazG Escherichia coli APEC O78 nucleoside triphosphate pyrophosphohydrolase YP_007382669.1 3642088 R 1274814 CDS YP_007382670.1 443618814 14483472 complement(3642950..3643285) 1 NC_020163.1 COG2337 Growth inhibitor; toxin ChpA 3643285 14483472 APECO78_17525 Escherichia coli APEC O78 toxin ChpA YP_007382670.1 3642950 R 1274814 CDS YP_007382671.1 443618815 14483473 complement(3643285..3643533) 1 NC_020163.1 COG2336 Growth regulator; antitoxin MazE 3643533 14483473 APECO78_17530 Escherichia coli APEC O78 antitoxin MazE YP_007382671.1 3643285 R 1274814 CDS YP_007382672.1 443618816 14483474 complement(3643611..3645845) 1 NC_020163.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; (p)ppGpp synthetase I 3645845 14483474 APECO78_17535 Escherichia coli APEC O78 (p)ppGpp synthetase I YP_007382672.1 3643611 R 1274814 CDS YP_007382673.1 443618817 14483475 complement(3645893..3647194) 1 NC_020163.1 COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; 23S rRNA m(5)U1939 methyltransferase 3647194 rumA 14483475 rumA Escherichia coli APEC O78 23S rRNA m(5)U1939 methyltransferase YP_007382673.1 3645893 R 1274814 CDS YP_007382674.1 443618818 14483476 3647251..3650007 1 NC_020163.1 COG0642 Signal transduction histidine kinase; hybrid sensory histidine kinase BarA 3650007 14483476 APECO78_17545 Escherichia coli APEC O78 hybrid sensory histidine kinase BarA YP_007382674.1 3647251 D 1274814 CDS YP_007382675.1 443618819 14483477 complement(3650239..3651579) 1 NC_020163.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; glucarate dehydratase 3651579 gudD 14483477 gudD Escherichia coli APEC O78 glucarate dehydratase YP_007382675.1 3650239 R 1274814 CDS YP_007382676.1 443618820 14483478 complement(3651600..3652940) 1 NC_020163.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; (D)-glucarate dehydratase 2 GudX 3652940 14483478 APECO78_17555 Escherichia coli APEC O78 (D)-glucarate dehydratase 2 GudX YP_007382676.1 3651600 R 1274814 CDS YP_007382677.1 443618821 14483479 complement(3652942..3654294) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; D-glucarate transporter GudP 3654294 14483479 APECO78_17560 Escherichia coli APEC O78 D-glucarate transporter GudP YP_007382677.1 3652942 R 1274814 CDS YP_007382678.1 443618822 14483480 complement(3654729..3655178) 1 NC_020163.1 COG0716 Flavodoxins; flavodoxin 3655178 14483480 APECO78_17565 Escherichia coli APEC O78 flavodoxin YP_007382678.1 3654729 R 1274814 CDS YP_007382679.1 443618823 14483481 complement(3655196..3655978) 1 NC_020163.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; tRNA pseudouridine synthase C 3655978 14483481 APECO78_17570 Escherichia coli APEC O78 tRNA pseudouridine synthase C YP_007382679.1 3655196 R 1274814 CDS YP_007382680.1 443618824 14483482 complement(3655978..3656307) 1 NC_020163.1 COG3098 Uncharacterized protein conserved in bacteria; hypothetical protein 3656307 14483482 APECO78_17575 Escherichia coli APEC O78 hypothetical protein YP_007382680.1 3655978 R 1274814 CDS YP_007382681.1 443618825 14483483 complement(3656554..3656679) 1 NC_020163.1 hypothetical protein 3656679 14483483 APECO78_17580 Escherichia coli APEC O78 hypothetical protein YP_007382681.1 3656554 R 1274814 CDS YP_007382682.1 443618826 14483484 complement(3656929..3657474) 1 NC_020163.1 SecY interacting protein Syd 3657474 14483484 APECO78_17585 Escherichia coli APEC O78 SecY interacting protein Syd YP_007382682.1 3656929 R 1274814 CDS YP_007382683.1 443618827 14483485 3657542..3658390 1 NC_020163.1 COG2904 Uncharacterized protein conserved in bacteria; 7-cyano-7-deazaguanine reductase 3658390 queF 14483485 queF Escherichia coli APEC O78 7-cyano-7-deazaguanine reductase YP_007382683.1 3657542 D 1274814 CDS YP_007382684.1 443618828 14483486 3658502..3659866 1 NC_020163.1 COG1611 Predicted Rossmann fold nucleotide-binding protein; hypothetical protein 3659866 14483486 APECO78_17595 Escherichia coli APEC O78 hypothetical protein YP_007382684.1 3658502 D 1274814 CDS YP_007382685.1 443618829 14483487 3660423..3661712 1 NC_020163.1 COG0814 Amino acid permeases; serine transporter 3661712 14483487 APECO78_17600 Escherichia coli APEC O78 serine transporter YP_007382685.1 3660423 D 1274814 CDS YP_007382686.1 443618830 14483488 3661770..3663137 1 NC_020163.1 COG1760 L-serine deaminase; L-serine deaminase II 3663137 14483488 APECO78_17605 Escherichia coli APEC O78 L-serine deaminase II YP_007382686.1 3661770 D 1274814 CDS YP_007382687.1 443618831 14483489 3663249..3664004 1 NC_020163.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); flap endonuclease-like protein 3664004 14483489 APECO78_17610 Escherichia coli APEC O78 flap endonuclease-like protein YP_007382687.1 3663249 D 1274814 CDS YP_007382688.1 443618832 14483490 complement(3664059..3665207) 1 NC_020163.1 COG1454 Alcohol dehydrogenase, class IV; L-1,2-propanediol oxidoreductase 3665207 14483490 APECO78_17615 Escherichia coli APEC O78 L-1,2-propanediol oxidoreductase YP_007382688.1 3664059 R 1274814 CDS YP_007382689.1 443618833 14483491 complement(3665235..3665882) 1 NC_020163.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-fuculose phosphate aldolase 3665882 14483491 APECO78_17620 Escherichia coli APEC O78 L-fuculose phosphate aldolase YP_007382689.1 3665235 R 1274814 CDS YP_007382690.1 443618834 14483492 3666429..3667745 1 NC_020163.1 COG0738 Fucose permease; L-fucose transporter 3667745 14483492 APECO78_17625 Escherichia coli APEC O78 L-fucose transporter YP_007382690.1 3666429 D 1274814 CDS YP_007382691.1 443618835 14483493 3667778..3669553 1 NC_020163.1 COG2407 L-fucose isomerase and related proteins; L-fucose isomerase 3669553 fucI 14483493 fucI Escherichia coli APEC O78 L-fucose isomerase YP_007382691.1 3667778 D 1274814 CDS YP_007382692.1 443618836 14483494 3669662..3671080 1 NC_020163.1 COG1070 Sugar (pentulose and hexulose) kinases; L-fuculokinase 3671080 14483494 APECO78_17635 Escherichia coli APEC O78 L-fuculokinase YP_007382692.1 3669662 D 1274814 CDS YP_007382693.1 443618837 14483495 3671082..3671504 1 NC_020163.1 COG4154 Fucose dissimilation pathway protein FucU; L-fucose mutarotase 3671504 14483495 APECO78_17640 Escherichia coli APEC O78 L-fucose mutarotase YP_007382693.1 3671082 D 1274814 CDS YP_007382694.1 443618838 14483496 3671562..3672293 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional activator FucR 3672293 14483496 APECO78_17645 Escherichia coli APEC O78 DNA-binding transcriptional activator FucR YP_007382694.1 3671562 D 1274814 CDS YP_007382695.1 443618839 14483497 complement(3672337..3673437) 1 NC_020163.1 COG2933 Predicted SAM-dependent methyltransferase; 23S rRNA C2498 ribose 2'-O-ribose methyltransferase 3673437 14483497 APECO78_17650 Escherichia coli APEC O78 23S rRNA C2498 ribose 2'-O-ribose methyltransferase YP_007382695.1 3672337 R 1274814 CDS YP_007382696.1 443618840 14483498 complement(3673430..3673825) 1 NC_020163.1 COG2363 Uncharacterized small membrane protein; hypothetical protein 3673825 14483498 APECO78_17655 Escherichia coli APEC O78 hypothetical protein YP_007382696.1 3673430 R 1274814 CDS YP_007382697.1 443618841 14483499 complement(3673844..3674761) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator GcvA 3674761 14483499 APECO78_17660 Escherichia coli APEC O78 DNA-binding transcriptional activator GcvA YP_007382697.1 3673844 R 1274814 CDS YP_007382698.1 443618842 14483500 complement(3675112..3675339) 1 NC_020163.1 hypothetical protein 3675339 14483500 APECO78_17665 Escherichia coli APEC O78 hypothetical protein YP_007382698.1 3675112 R 1274814 CDS YP_007382699.1 443618843 14483501 3675531..3676736 1 NC_020163.1 COG0520 Selenocysteine lyase; cysteine sulfinate desulfinase 3676736 14483501 APECO78_17670 Escherichia coli APEC O78 cysteine sulfinate desulfinase YP_007382699.1 3675531 D 1274814 CDS YP_007382700.1 443618844 14483502 3676736..3677179 1 NC_020163.1 COG2166 SufE protein probably involved in Fe-S center assembly; CsdA-binding activator 3677179 14483502 APECO78_17675 Escherichia coli APEC O78 CsdA-binding activator YP_007382700.1 3676736 D 1274814 CDS YP_007382701.1 443618845 14483503 complement(3677230..3678036) 1 NC_020163.1 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; sulfur acceptor protein CsdL 3678036 14483503 APECO78_17680 Escherichia coli APEC O78 sulfur acceptor protein CsdL YP_007382701.1 3677230 R 1274814 CDS YP_007382702.1 443618846 14483504 complement(3678275..3679372) 1 NC_020163.1 COG2821 Membrane-bound lytic murein transglycosylase; Membrane-bound lytic murein transglycosylase A 3679372 14483504 APECO78_17685 Escherichia coli APEC O78 Membrane-bound lytic murein transglycosylase A YP_007382702.1 3678275 R 1274814 CDS YP_007382703.1 443618847 14484647 complement(3679952..3681205) 1 NC_020163.1 COG0860 N-acetylmuramoyl-L-alanine amidase; Putative amidase 3681205 14484647 APECO78_17690 Escherichia coli APEC O78 Putative amidase YP_007382703.1 3679952 R 1274814 CDS YP_007382704.1 443618848 14483506 3681437..3682768 1 NC_020163.1 COG0548 Acetylglutamate kinase; N-acetylglutamate synthase 3682768 14483506 APECO78_17695 Escherichia coli APEC O78 N-acetylglutamate synthase YP_007382704.1 3681437 D 1274814 CDS YP_007382705.1 443618849 14483507 complement(3682830..3684656) 1 NC_020163.1 COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; exonuclease V subunit alpha 3684656 recD 14483507 recD Escherichia coli APEC O78 exonuclease V subunit alpha YP_007382705.1 3682830 R 1274814 CDS YP_007382706.1 443618850 14483508 complement(3684656..3688198) 1 NC_020163.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); exonuclease V subunit beta 3688198 recB 14483508 recB Escherichia coli APEC O78 exonuclease V subunit beta YP_007382706.1 3684656 R 1274814 CDS YP_007382707.1 443618851 14483509 complement(3688191..3691079) 1 NC_020163.1 COG1025 Secreted/periplasmic Zn-dependent peptidases, insulinase-like; protease 3691079 14483509 APECO78_17710 Escherichia coli APEC O78 protease YP_007382707.1 3688191 R 1274814 CDS YP_007382708.1 443618852 14483510 complement(3691255..3694623) 1 NC_020163.1 COG1330 Exonuclease V gamma subunit; exonuclease V subunit gamma 3694623 recC 14483510 recC Escherichia coli APEC O78 exonuclease V subunit gamma YP_007382708.1 3691255 R 1274814 CDS YP_007382709.1 443618853 14483511 complement(3694636..3694959) 1 NC_020163.1 hypothetical protein 3694959 14483511 APECO78_17720 Escherichia coli APEC O78 hypothetical protein YP_007382709.1 3694636 R 1274814 CDS YP_007382710.1 443618854 14483512 complement(3694944..3695351) 1 NC_020163.1 hypothetical protein 3695351 14483512 APECO78_17725 Escherichia coli APEC O78 hypothetical protein YP_007382710.1 3694944 R 1274814 CDS YP_007382711.1 443618855 14483513 complement(3695348..3695911) 1 NC_020163.1 COG4795 Type II secretory pathway, component PulJ; hypothetical protein 3695911 14483513 APECO78_17730 Escherichia coli APEC O78 hypothetical protein YP_007382711.1 3695348 R 1274814 CDS YP_007382712.1 443618856 14483514 complement(3695902..3696372) 1 NC_020163.1 COG2165 Type II secretory pathway, pseudopilin PulG; hypothetical protein 3696372 14483514 APECO78_17735 Escherichia coli APEC O78 hypothetical protein YP_007382712.1 3695902 R 1274814 CDS YP_007382713.1 443618857 14483515 complement(3696557..3697351) 1 NC_020163.1 COG0207 Thymidylate synthase; thymidylate synthase 3697351 thyA 14483515 thyA Escherichia coli APEC O78 thymidylate synthase YP_007382713.1 3696557 R 1274814 CDS YP_007382714.1 443618858 14483516 complement(3697358..3698233) 1 NC_020163.1 COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase 3698233 14483516 APECO78_17745 Escherichia coli APEC O78 prolipoprotein diacylglyceryl transferase YP_007382714.1 3697358 R 1274814 CDS YP_007382715.1 443618859 14483517 complement(3698384..3700630) 1 NC_020163.1 COG3605 Signal transduction protein containing GAF and PtsI domains; phosphoenolpyruvate-protein phosphotransferase 3700630 14483517 APECO78_17750 Escherichia coli APEC O78 phosphoenolpyruvate-protein phosphotransferase YP_007382715.1 3698384 R 1274814 CDS YP_007382716.1 443618860 14483518 complement(3700643..3701173) 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; RNA pyrophosphohydrolase 3701173 14483518 APECO78_17755 Escherichia coli APEC O78 RNA pyrophosphohydrolase YP_007382716.1 3700643 R 1274814 CDS YP_007382717.1 443618861 14483519 complement(3701526..3701672) 1 NC_020163.1 hypothetical protein 3701672 14483519 APECO78_17760 Escherichia coli APEC O78 hypothetical protein YP_007382717.1 3701526 R 1274814 CDS YP_007382718.1 443618862 14483520 3701858..3702547 1 NC_020163.1 COG3066 DNA mismatch repair protein; DNA mismatch repair protein 3702547 14483520 APECO78_17765 Escherichia coli APEC O78 DNA mismatch repair protein YP_007382718.1 3701858 D 1274814 CDS YP_007382719.1 443618863 14483521 3702616..3703329 1 NC_020163.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; hypothetical protein 3703329 14483521 APECO78_17770 Escherichia coli APEC O78 hypothetical protein YP_007382719.1 3702616 D 1274814 CDS YP_007382720.1 443618864 14483522 3703467..3703685 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; hypothetical protein 3703685 14483522 APECO78_17775 Escherichia coli APEC O78 hypothetical protein YP_007382720.1 3703467 D 1274814 CDS YP_007382721.1 443618865 14483523 3703793..3704833 1 NC_020163.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); putative oxidoreductase, NADP(H)-dependent aldo-keto reductase 3704833 14483523 APECO78_17780 Escherichia coli APEC O78 putative oxidoreductase, NADP(H)-dependent aldo-keto reductase YP_007382721.1 3703793 D 1274814 CDS YP_007382722.1 443618866 14483524 complement(3704865..3706058) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; lysophospholipid transporter LplT 3706058 14483524 APECO78_17785 Escherichia coli APEC O78 lysophospholipid transporter LplT YP_007382722.1 3704865 R 1274814 CDS YP_007382723.1 443618867 14483525 complement(3706051..3708210) 1 NC_020163.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3708210 14483525 APECO78_17790 Escherichia coli APEC O78 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_007382723.1 3706051 R 1274814 CDS YP_007382724.1 443618868 14483526 3708796..3709827 1 NC_020163.1 COG1609 Transcriptional regulators; DNA-binding transcriptional regulator GalR 3709827 14483526 APECO78_17795 Escherichia coli APEC O78 DNA-binding transcriptional regulator GalR YP_007382724.1 3708796 D 1274814 CDS YP_007382725.1 443618869 14483527 complement(3709834..3711096) 1 NC_020163.1 COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase 3711096 14483527 APECO78_17800 Escherichia coli APEC O78 diaminopimelate decarboxylase YP_007382725.1 3709834 R 1274814 CDS YP_007382726.1 443618870 14483528 3711218..3712153 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator LysR 3712153 14483528 APECO78_17805 Escherichia coli APEC O78 DNA-binding transcriptional regulator LysR YP_007382726.1 3711218 D 1274814 CDS YP_007382727.1 443618871 14483529 complement(3712140..3712832) 1 NC_020163.1 COG1794 Aspartate racemase; racemase 3712832 14483529 APECO78_17810 Escherichia coli APEC O78 racemase YP_007382727.1 3712140 R 1274814 CDS YP_007382728.1 443618872 14483530 complement(3712961..3714379) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; sugar transporter 3714379 14483530 APECO78_17815 Escherichia coli APEC O78 sugar transporter YP_007382728.1 3712961 R 1274814 CDS YP_007382729.1 443618873 14483531 complement(3714694..3715455) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2-deoxy-D-gluconate 3-dehydrogenase 3715455 14483531 APECO78_17820 Escherichia coli APEC O78 2-deoxy-D-gluconate 3-dehydrogenase YP_007382729.1 3714694 R 1274814 CDS YP_007382730.1 443618874 14483532 complement(3715485..3716321) 1 NC_020163.1 COG3717 5-keto 4-deoxyuronate isomerase; 5-keto-4-deoxyuronate isomerase 3716321 14483532 APECO78_17825 Escherichia coli APEC O78 5-keto-4-deoxyuronate isomerase YP_007382730.1 3715485 R 1274814 CDS YP_007382731.1 443618875 14483533 complement(3716608..3717789) 1 NC_020163.1 COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 3717789 14483533 APECO78_17830 Escherichia coli APEC O78 acetyl-CoA acetyltransferase YP_007382731.1 3716608 R 1274814 CDS YP_007382732.1 443618876 14483534 3718044..3719273 1 NC_020163.1 COG0814 Amino acid permeases; transporter protein 3719273 14483534 APECO78_17835 Escherichia coli APEC O78 transporter protein YP_007382732.1 3718044 D 1274814 CDS YP_007382733.1 443618877 14483535 3719733..3720365 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; yqeH protein 3720365 14483535 APECO78_17840 Escherichia coli APEC O78 yqeH protein YP_007382733.1 3719733 D 1274814 CDS YP_007382734.1 443618878 14483536 3720699..3721508 1 NC_020163.1 COG3710 DNA-binding winged-HTH domains; transcriptional regulator 3721508 14483536 APECO78_17845 Escherichia coli APEC O78 transcriptional regulator YP_007382734.1 3720699 D 1274814 CDS YP_007382735.1 443618879 14483537 3721501..3721983 1 NC_020163.1 hypothetical protein 3721983 14483537 APECO78_17850 Escherichia coli APEC O78 hypothetical protein YP_007382735.1 3721501 D 1274814 CDS YP_007382736.1 443618880 14483538 complement(3722016..3722096) 1 NC_020163.1 hypothetical protein 3722096 14483538 APECO78_17855 Escherichia coli APEC O78 hypothetical protein YP_007382736.1 3722016 R 1274814 CDS YP_007382737.1 443618881 14483539 complement(3722132..3722569) 1 NC_020163.1 hypothetical protein 3722569 14483539 APECO78_17860 Escherichia coli APEC O78 hypothetical protein YP_007382737.1 3722132 R 1274814 CDS YP_007382738.1 443618882 14483540 3722751..3723188 1 NC_020163.1 hypothetical protein 3723188 14483540 APECO78_17865 Escherichia coli APEC O78 hypothetical protein YP_007382738.1 3722751 D 1274814 CDS YP_007382739.1 443618883 14483541 3723466..3723957 1 NC_020163.1 COG0457 FOG: TPR repeat; chaperone 3723957 14483541 APECO78_17870 Escherichia coli APEC O78 chaperone YP_007382739.1 3723466 D 1274814 CDS YP_007382740.1 443618884 14483542 3724292..3725188 1 NC_020163.1 COG3710 DNA-binding winged-HTH domains; transcriptional regulator 3725188 14483542 APECO78_17875 Escherichia coli APEC O78 transcriptional regulator YP_007382740.1 3724292 D 1274814 CDS YP_007382741.1 443618885 14483543 complement(3725113..3726018) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 3726018 14483543 APECO78_17880 Escherichia coli APEC O78 IS2 transposase TnpB YP_007382741.1 3725113 R 1274814 CDS YP_007382742.1 443618886 14483544 complement(3725976..3726341) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 3726341 14483544 APECO78_17885 Escherichia coli APEC O78 IS2 repressor TnpA YP_007382742.1 3725976 R 1274814 CDS YP_007382743.1 443618887 14483545 3726543..3727004 1 NC_020163.1 COG0457 FOG: TPR repeat; transcriptional regulator 3727004 14483545 APECO78_17890 Escherichia coli APEC O78 transcriptional regulator YP_007382743.1 3726543 D 1274814 CDS YP_007382744.1 443618888 14483546 3727575..3727949 1 NC_020163.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative peptidoglycan binding protein 3727949 14483546 APECO78_17895 Escherichia coli APEC O78 putative peptidoglycan binding protein YP_007382744.1 3727575 D 1274814 CDS YP_007382745.1 443618889 14483547 complement(3727994..3728437) 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; hypothetical protein 3728437 14483547 APECO78_17900 Escherichia coli APEC O78 hypothetical protein YP_007382745.1 3727994 R 1274814 CDS YP_007382746.1 443618890 14483548 complement(3728471..3728626) 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; response regulator protein 3728626 14483548 APECO78_17905 Escherichia coli APEC O78 response regulator protein YP_007382746.1 3728471 R 1274814 CDS YP_007382747.1 443618891 14483549 complement(3728847..3729278) 1 NC_020163.1 hypothetical protein 3729278 14483549 APECO78_17910 Escherichia coli APEC O78 hypothetical protein YP_007382747.1 3728847 R 1274814 CDS YP_007382748.1 443618892 14483550 complement(3729495..3730076) 1 NC_020163.1 hypothetical protein 3730076 14483550 APECO78_17915 Escherichia coli APEC O78 hypothetical protein YP_007382748.1 3729495 R 1274814 CDS YP_007382749.1 443618893 14483551 complement(3730092..3730826) 1 NC_020163.1 COG4669 Type III secretory pathway, lipoprotein EscJ; type III secretion system lipoprotein EprK 3730826 14483551 APECO78_17920 Escherichia coli APEC O78 type III secretion system lipoprotein EprK YP_007382749.1 3730092 R 1274814 CDS YP_007382750.1 443618894 14483552 complement(3730867..3731082) 1 NC_020163.1 type III secretion protein EprJ 3731082 14483552 APECO78_17925 Escherichia coli APEC O78 type III secretion protein EprJ YP_007382750.1 3730867 R 1274814 CDS YP_007382751.1 443618895 14483553 complement(3731259..3731414) 1 NC_020163.1 type III secretion protein EprI 3731414 14483553 APECO78_17930 Escherichia coli APEC O78 type III secretion protein EprI YP_007382751.1 3731259 R 1274814 CDS YP_007382752.1 443618896 14483554 complement(3731428..3732609) 1 NC_020163.1 type III secretion EprH protein 3732609 14483554 APECO78_17935 Escherichia coli APEC O78 type III secretion EprH protein YP_007382752.1 3731428 R 1274814 CDS YP_007382753.1 443618897 14483555 3732867..3733367 1 NC_020163.1 COG2771 DNA-binding HTH domain-containing proteins; response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 3733367 14483555 APECO78_17940 Escherichia coli APEC O78 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YP_007382753.1 3732867 D 1274814 CDS YP_007382754.1 443618898 14483556 3733369..3733662 1 NC_020163.1 hypothetical protein 3733662 14483556 APECO78_17945 Escherichia coli APEC O78 hypothetical protein YP_007382754.1 3733369 D 1274814 CDS YP_007382755.1 443618899 14483557 complement(3733724..3734086) 1 NC_020163.1 COG1377 Flagellar biosynthesis pathway, component FlhB; type III secretion system protein SpaS 3734086 14483557 APECO78_17950 Escherichia coli APEC O78 type III secretion system protein SpaS YP_007382755.1 3733724 R 1274814 CDS YP_007382756.1 443618900 14483558 complement(3734113..3734280) 1 NC_020163.1 COG1377 Flagellar biosynthesis pathway, component FlhB; type III secretion system protein 3734280 14483558 APECO78_17955 Escherichia coli APEC O78 type III secretion system protein YP_007382756.1 3734113 R 1274814 CDS YP_007382757.1 443618901 14483559 complement(3734277..3734873) 1 NC_020163.1 COG1377 Flagellar biosynthesis pathway, component FlhB; type III secretion system protein SpaS 3734873 14483559 APECO78_17960 Escherichia coli APEC O78 type III secretion system protein SpaS YP_007382757.1 3734277 R 1274814 CDS YP_007382758.1 443618902 14483560 complement(3734882..3735649) 1 NC_020163.1 COG4791 Type III secretory pathway, component EscT; type III secretion protein EpaR 3735649 14483560 APECO78_17965 Escherichia coli APEC O78 type III secretion protein EpaR YP_007382758.1 3734882 R 1274814 CDS YP_007382759.1 443618903 14483561 complement(3735651..3735911) 1 NC_020163.1 COG4794 Type III secretory pathway, component EscS; type III secretion protein EpaQ 3735911 14483561 APECO78_17970 Escherichia coli APEC O78 type III secretion protein EpaQ YP_007382759.1 3735651 R 1274814 CDS YP_007382760.1 443618904 14483562 complement(3735921..3736586) 1 NC_020163.1 COG4790 Type III secretory pathway, component EscR; type III secretion system protein SpaP 3736586 spaP 14483562 spaP Escherichia coli APEC O78 type III secretion system protein SpaP YP_007382760.1 3735921 R 1274814 CDS YP_007382761.1 443618905 14483563 complement(3736576..3737523) 1 NC_020163.1 COG1886 Flagellar motor switch/type III secretory pathway protein; type III secretion system protein SpaO 3737523 14483563 APECO78_17980 Escherichia coli APEC O78 type III secretion system protein SpaO YP_007382761.1 3736576 R 1274814 CDS YP_007382762.1 443618906 14483564 complement(3737523..3737870) 1 NC_020163.1 protein EivJ 3737870 14483564 APECO78_17985 Escherichia coli APEC O78 protein EivJ YP_007382762.1 3737523 R 1274814 CDS YP_007382763.1 443618907 14483565 complement(3737933..3738286) 1 NC_020163.1 type III secretion system protein 3738286 14483565 APECO78_17990 Escherichia coli APEC O78 type III secretion system protein YP_007382763.1 3737933 R 1274814 CDS YP_007382764.1 443618908 14483566 complement(3738283..3738396) 1 NC_020163.1 hypothetical protein 3738396 14483566 APECO78_17995 Escherichia coli APEC O78 hypothetical protein YP_007382764.1 3738283 R 1274814 CDS YP_007382765.1 443618909 14483567 complement(3738414..3738830) 1 NC_020163.1 type III secretion apparatus protein 3738830 14483567 APECO78_18000 Escherichia coli APEC O78 type III secretion apparatus protein YP_007382765.1 3738414 R 1274814 CDS YP_007382766.1 443618910 14483568 complement(3740144..3740671) 1 NC_020163.1 COG4789 Type III secretory pathway, component EscV; type III secretion system protein InvA 3740671 14483568 APECO78_18015 Escherichia coli APEC O78 type III secretion system protein InvA YP_007382766.1 3740144 R 1274814 CDS YP_007382767.1 443618911 14483569 complement(3740674..3740805) 1 NC_020163.1 protein EivF 3740805 14483569 APECO78_18020 Escherichia coli APEC O78 protein EivF YP_007382767.1 3740674 R 1274814 CDS YP_007382768.1 443618912 14483570 complement(3741151..3741330) 1 NC_020163.1 hypothetical protein 3741330 14483570 APECO78_18025 Escherichia coli APEC O78 hypothetical protein YP_007382768.1 3741151 R 1274814 CDS YP_007382769.1 443618913 14483571 complement(3741397..3743049) 1 NC_020163.1 hypothetical protein 3743049 14483571 APECO78_18030 Escherichia coli APEC O78 hypothetical protein YP_007382769.1 3741397 R 1274814 CDS YP_007382770.1 443618914 14484648 complement(3743393..3744148) 1 NC_020163.1 COG0739 Membrane proteins related to metalloendopeptidases; peptidase 3744148 14484648 APECO78_18035 Escherichia coli APEC O78 peptidase YP_007382770.1 3743393 R 1274814 CDS YP_007382771.1 443618915 14483573 complement(3744145..3744336) 1 NC_020163.1 hypothetical protein 3744336 14483573 APECO78_18040 Escherichia coli APEC O78 hypothetical protein YP_007382771.1 3744145 R 1274814 CDS YP_007382772.1 443618916 14483574 3744563..3746860 1 NC_020163.1 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; xanthine dehydrogenase subunit XdhA 3746860 14483574 APECO78_18045 Escherichia coli APEC O78 xanthine dehydrogenase subunit XdhA YP_007382772.1 3744563 D 1274814 CDS YP_007382773.1 443618917 14483575 3746871..3747749 1 NC_020163.1 COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; xanthine dehydrogenase subunit XdhB 3747749 14483575 APECO78_18050 Escherichia coli APEC O78 xanthine dehydrogenase subunit XdhB YP_007382773.1 3746871 D 1274814 CDS YP_007382774.1 443618918 14483576 3747746..3748225 1 NC_020163.1 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; xanthine dehydrogenase iron-sulfur-binding subunit 3748225 14483576 APECO78_18055 Escherichia coli APEC O78 xanthine dehydrogenase iron-sulfur-binding subunit YP_007382774.1 3747746 D 1274814 CDS YP_007382775.1 443618919 14483577 complement(3748265..3750043) 1 NC_020163.1 COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; DNA-binding transcriptional regulator 3750043 14483577 APECO78_18060 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007382775.1 3748265 R 1274814 CDS YP_007382776.1 443618920 14483578 3750522..3751709 1 NC_020163.1 COG0078 Ornithine carbamoyltransferase; putative carbamoyltransferase 3751709 14483578 APECO78_18065 Escherichia coli APEC O78 putative carbamoyltransferase YP_007382776.1 3750522 D 1274814 CDS YP_007382777.1 443618921 14483579 3751767..3752963 1 NC_020163.1 COG1171 Threonine dehydratase; diaminopropionate ammonia-lyase 3752963 14483579 APECO78_18070 Escherichia coli APEC O78 diaminopropionate ammonia-lyase YP_007382777.1 3751767 D 1274814 CDS YP_007382778.1 443618922 14483580 3753021..3754232 1 NC_020163.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; peptidase 3754232 14483580 APECO78_18075 Escherichia coli APEC O78 peptidase YP_007382778.1 3753021 D 1274814 CDS YP_007382779.1 443618923 14483581 3754285..3755670 1 NC_020163.1 COG0044 Dihydroorotase and related cyclic amidohydrolases; phenylhydantoinase 3755670 14483581 APECO78_18080 Escherichia coli APEC O78 phenylhydantoinase YP_007382779.1 3754285 D 1274814 CDS YP_007382780.1 443618924 14483582 3755718..3756650 1 NC_020163.1 COG0549 Carbamate kinase; amino acid kinase 3756650 14483582 APECO78_18085 Escherichia coli APEC O78 amino acid kinase YP_007382780.1 3755718 D 1274814 CDS YP_007382781.1 443618925 14483583 complement(3756691..3758316) 1 NC_020163.1 COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; hypothetical protein 3758316 14483583 APECO78_18090 Escherichia coli APEC O78 hypothetical protein YP_007382781.1 3756691 R 1274814 CDS YP_007382782.1 443618926 14483584 complement(3758364..3759134) 1 NC_020163.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase; hypothetical protein 3759134 14483584 APECO78_18095 Escherichia coli APEC O78 hypothetical protein YP_007382782.1 3758364 R 1274814 CDS YP_007382783.1 443618927 14483585 3759237..3759815 1 NC_020163.1 COG2068 Uncharacterized MobA-related protein; hypothetical protein 3759815 14483585 APECO78_18100 Escherichia coli APEC O78 hypothetical protein YP_007382783.1 3759237 D 1274814 CDS YP_007382784.1 443618928 14483586 3760137..3763235 1 NC_020163.1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; selenate reductase subunit YgfK 3763235 14483586 APECO78_18105 Escherichia coli APEC O78 selenate reductase subunit YgfK YP_007382784.1 3760137 D 1274814 CDS YP_007382785.1 443618929 14483587 3763238..3764566 1 NC_020163.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases; chlorohydrolase/aminohydrolase 3764566 14483587 APECO78_18110 Escherichia coli APEC O78 chlorohydrolase/aminohydrolase YP_007382785.1 3763238 D 1274814 CDS YP_007382786.1 443618930 14483588 3764617..3765396 1 NC_020163.1 COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; oxidoreductase 3765396 14483588 APECO78_18115 Escherichia coli APEC O78 oxidoreductase YP_007382786.1 3764617 D 1274814 CDS YP_007382787.1 443618931 14483589 3765393..3768263 1 NC_020163.1 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; hypoxanthine oxidase 3768263 14483589 APECO78_18120 Escherichia coli APEC O78 hypoxanthine oxidase YP_007382787.1 3765393 D 1274814 CDS YP_007382788.1 443618932 14483590 3768428..3769828 1 NC_020163.1 COG2233 Xanthine/uracil permeases; purine permease YgfO 3769828 14483590 APECO78_18125 Escherichia coli APEC O78 purine permease YgfO YP_007382788.1 3768428 D 1274814 CDS YP_007382789.1 443618933 14483591 3769846..3771162 1 NC_020163.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases; guanine deaminase 3771162 14483591 APECO78_18130 Escherichia coli APEC O78 guanine deaminase YP_007382789.1 3769846 D 1274814 CDS YP_007382790.1 443618934 14483592 3771198..3772565 1 NC_020163.1 COG2252 Permeases; hypothetical protein 3772565 14483592 APECO78_18135 Escherichia coli APEC O78 hypothetical protein YP_007382790.1 3771198 D 1274814 CDS YP_007382791.1 443618935 14483593 complement(3772601..3773089) 1 NC_020163.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; putative oxidoreductase 3773089 14483593 APECO78_18140 Escherichia coli APEC O78 putative oxidoreductase YP_007382791.1 3772601 R 1274814 CDS YP_007382792.1 443618936 14483594 complement(3773089..3775008) 1 NC_020163.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; oxidoreductase Fe-S binding subunit 3775008 14483594 APECO78_18145 Escherichia coli APEC O78 oxidoreductase Fe-S binding subunit YP_007382792.1 3773089 R 1274814 CDS YP_007382793.1 443618937 14483595 3775444..3776892 1 NC_020163.1 COG2233 Xanthine/uracil permeases; purine permease ygfU 3776892 14483595 APECO78_18150 Escherichia coli APEC O78 purine permease ygfU YP_007382793.1 3775444 D 1274814 CDS YP_007382794.1 443618938 14483596 3776894..3777019 1 NC_020163.1 hypothetical protein 3777019 14483596 APECO78_18155 Escherichia coli APEC O78 hypothetical protein YP_007382794.1 3776894 D 1274814 CDS YP_007382795.1 443618939 14483597 3777142..3777690 1 NC_020163.1 COG1443 Isopentenyldiphosphate isomerase; isopentenyl-diphosphate delta-isomerase 3777690 14483597 APECO78_18160 Escherichia coli APEC O78 isopentenyl-diphosphate delta-isomerase YP_007382795.1 3777142 D 1274814 CDS YP_007382796.1 443618940 14483598 complement(3777733..3779250) 1 NC_020163.1 COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA synthetase 3779250 14483598 APECO78_18165 Escherichia coli APEC O78 lysyl-tRNA synthetase YP_007382796.1 3777733 R 1274814 CDS YP_007382797.1 443618941 14483599 complement(3779260..3780141) 1 NC_020163.1 COG1186 Protein chain release factor B; peptide chain release factor RF2 3780141 14483599 APECO78_18170 Escherichia coli APEC O78 peptide chain release factor RF2 YP_007382797.1 3779260 R 1274814 CDS YP_007382798.1 443618942 14483600 complement(3780449..3782182) 1 NC_020163.1 COG0608 Single-stranded DNA-specific exonuclease; ssDNA exonuclease, 5' -> 3'-specific 3782182 14483600 APECO78_18175 Escherichia coli APEC O78 ssDNA exonuclease, 5' -> 3'-specific YP_007382798.1 3780449 R 1274814 CDS YP_007382799.1 443618943 14483601 complement(3782188..3782898) 1 NC_020163.1 COG1651 Protein-disulfide isomerase; protein disulfide isomerase II DsbC 3782898 14483601 APECO78_18180 Escherichia coli APEC O78 protein disulfide isomerase II DsbC YP_007382799.1 3782188 R 1274814 CDS YP_007382800.1 443618944 14483602 complement(3782923..3783819) 1 NC_020163.1 COG4974 Site-specific recombinase XerD; site-specific tyrosine recombinase XerD 3783819 14483602 APECO78_18185 Escherichia coli APEC O78 site-specific tyrosine recombinase XerD YP_007382800.1 3782923 R 1274814 CDS YP_007382801.1 443618945 14483603 3783931..3784452 1 NC_020163.1 COG0716 Flavodoxins; flavodoxin FldB 3784452 14483603 APECO78_18190 Escherichia coli APEC O78 flavodoxin FldB YP_007382801.1 3783931 D 1274814 CDS YP_007382802.1 443618946 14483604 complement(3784492..3784899) 1 NC_020163.1 hypothetical protein 3784899 14483604 APECO78_18195 Escherichia coli APEC O78 hypothetical protein YP_007382802.1 3784492 R 1274814 CDS YP_007382803.1 443618947 14483605 complement(3784880..3785146) 1 NC_020163.1 COG2938 Uncharacterized conserved protein; hypothetical protein 3785146 14483605 APECO78_18200 Escherichia coli APEC O78 hypothetical protein YP_007382803.1 3784880 R 1274814 CDS YP_007382804.1 443618948 14483606 3785389..3786369 1 NC_020163.1 COG0354 Predicted aminomethyltransferase related to GcvT; global regulator 3786369 14483606 APECO78_18205 Escherichia coli APEC O78 global regulator YP_007382804.1 3785389 D 1274814 CDS YP_007382805.1 443618949 14483607 complement(3786446..3787105) 1 NC_020163.1 COG1272 Predicted membrane protein, hemolysin III homolog; hemolysin 3787105 14483607 APECO78_18210 Escherichia coli APEC O78 hemolysin YP_007382805.1 3786446 R 1274814 CDS YP_007382806.1 443618950 14483608 complement(3787269..3787580) 1 NC_020163.1 COG3097 Uncharacterized protein conserved in bacteria; hypothetical protein 3787580 14483608 APECO78_18215 Escherichia coli APEC O78 hypothetical protein YP_007382806.1 3787269 R 1274814 CDS YP_007382807.1 443618951 14483609 3787625..3789058 1 NC_020163.1 COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; 6-phospho-beta-glucosidase BglA 3789058 14483609 APECO78_18220 Escherichia coli APEC O78 6-phospho-beta-glucosidase BglA YP_007382807.1 3787625 D 1274814 CDS YP_007382808.1 443618952 14483610 complement(3789115..3789858) 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain 3789858 14483610 APECO78_18225 Escherichia coli APEC O78 NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain YP_007382808.1 3789115 R 1274814 CDS YP_007382809.1 443618953 14483611 complement(3790124..3792997) 1 NC_020163.1 COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; glycine dehydrogenase 3792997 14483611 APECO78_18230 Escherichia coli APEC O78 glycine dehydrogenase YP_007382809.1 3790124 R 1274814 CDS YP_007382810.1 443618954 14483612 complement(3793115..3793504) 1 NC_020163.1 COG0509 Glycine cleavage system H protein (lipoate-binding); glycine cleavage system protein H 3793504 14483612 APECO78_18235 Escherichia coli APEC O78 glycine cleavage system protein H YP_007382810.1 3793115 R 1274814 CDS YP_007382811.1 443618955 14483613 complement(3793528..3794622) 1 NC_020163.1 COG0404 Glycine cleavage system T protein (aminomethyltransferase); glycine cleavage system aminomethyltransferase T 3794622 14483613 APECO78_18240 Escherichia coli APEC O78 glycine cleavage system aminomethyltransferase T YP_007382811.1 3793528 R 1274814 CDS YP_007382812.1 443618956 14483614 complement(3795070..3796272) 1 NC_020163.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; oxidoreductase 3796272 14483614 APECO78_18245 Escherichia coli APEC O78 oxidoreductase YP_007382812.1 3795070 R 1274814 CDS YP_007382813.1 443618957 14483615 complement(3796295..3797473) 1 NC_020163.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; 2-octaprenyl-6-methoxyphenyl hydroxylase 3797473 14483615 APECO78_18250 Escherichia coli APEC O78 2-octaprenyl-6-methoxyphenyl hydroxylase YP_007382813.1 3796295 R 1274814 CDS YP_007382814.1 443618958 14483616 complement(3797470..3798795) 1 NC_020163.1 COG0006 Xaa-Pro aminopeptidase; proline aminopeptidase P II 3798795 14483616 APECO78_18255 Escherichia coli APEC O78 proline aminopeptidase P II YP_007382814.1 3797470 R 1274814 CDS YP_007382815.1 443618959 14483617 complement(3798821..3799399) 1 NC_020163.1 COG3079 Uncharacterized protein conserved in bacteria; hypothetical protein 3799399 14483617 APECO78_18260 Escherichia coli APEC O78 hypothetical protein YP_007382815.1 3798821 R 1274814 CDS YP_007382816.1 443618960 14483618 3799567..3799896 1 NC_020163.1 COG3027 Uncharacterized protein conserved in bacteria; Z-ring-associated protein 3799896 14483618 APECO78_18265 Escherichia coli APEC O78 Z-ring-associated protein YP_007382816.1 3799567 D 1274814 CDS YP_007382817.1 443618961 14483619 3800196..3800744 1 NC_020163.1 COG0212 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase family protein 3800744 14483619 APECO78_18270 Escherichia coli APEC O78 5-formyltetrahydrofolate cyclo-ligase family protein YP_007382817.1 3800196 D 1274814 CDS YP_007382818.1 443618962 14483620 complement(3801525..3802757) 1 NC_020163.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase 3802757 14483620 APECO78_18275 Escherichia coli APEC O78 D-3-phosphoglycerate dehydrogenase YP_007382818.1 3801525 R 1274814 CDS YP_007382819.1 443618963 14483621 complement(3803013..3803672) 1 NC_020163.1 COG0120 Ribose 5-phosphate isomerase; ribose-5-phosphate isomerase A 3803672 14483621 APECO78_18280 Escherichia coli APEC O78 ribose-5-phosphate isomerase A YP_007382819.1 3803013 R 1274814 CDS YP_007382820.1 443618964 14483622 complement(3803728..3803958) 1 NC_020163.1 COG0583 Transcriptional regulator; hypothetical protein 3803958 14483622 APECO78_18285 Escherichia coli APEC O78 hypothetical protein YP_007382820.1 3803728 R 1274814 CDS YP_007382821.1 443618965 14483623 3804100..3804993 1 NC_020163.1 COG0583 Transcriptional regulator; Chromosome initiation inhibitor 3804993 14483623 APECO78_18290 Escherichia coli APEC O78 Chromosome initiation inhibitor YP_007382821.1 3804100 D 1274814 CDS YP_007382822.1 443618966 14483624 3805197..3807341 1 NC_020163.1 COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit; methylmalonyl-CoA mutase 3807341 14483624 APECO78_18295 Escherichia coli APEC O78 methylmalonyl-CoA mutase YP_007382822.1 3805197 D 1274814 CDS YP_007382823.1 443618967 14483625 3807334..3808329 1 NC_020163.1 COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family; membrane ATPase/protein kinase 3808329 14483625 APECO78_18300 Escherichia coli APEC O78 membrane ATPase/protein kinase YP_007382823.1 3807334 D 1274814 CDS YP_007382824.1 443618968 14483626 3808340..3809125 1 NC_020163.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; methylmalonyl-CoA decarboxylase 3809125 14483626 APECO78_18305 Escherichia coli APEC O78 methylmalonyl-CoA decarboxylase YP_007382824.1 3808340 D 1274814 CDS YP_007382825.1 443618969 14483627 3809149..3810627 1 NC_020163.1 COG0427 Acetyl-CoA hydrolase; succinate CoA transferase 3810627 14483627 APECO78_18310 Escherichia coli APEC O78 succinate CoA transferase YP_007382825.1 3809149 D 1274814 CDS YP_007382826.1 443618970 14483628 complement(3810624..3811520) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator 3811520 14483628 APECO78_18315 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007382826.1 3810624 R 1274814 CDS YP_007382827.1 443618971 14483629 complement(3811687..3812427) 1 NC_020163.1 COG2968 Uncharacterized conserved protein; oxidative stress defense protein 3812427 14483629 APECO78_18320 Escherichia coli APEC O78 oxidative stress defense protein YP_007382827.1 3811687 R 1274814 CDS YP_007382828.1 443618972 14483630 complement(3812520..3813155) 1 NC_020163.1 COG1279 Lysine efflux permease; arginine exporter protein 3813155 14483630 APECO78_18325 Escherichia coli APEC O78 arginine exporter protein YP_007382828.1 3812520 R 1274814 CDS YP_007382829.1 443618973 14483631 complement(3813294..3814154) 1 NC_020163.1 COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel MscS 3814154 14483631 APECO78_18330 Escherichia coli APEC O78 mechanosensitive channel MscS YP_007382829.1 3813294 R 1274814 CDS YP_007382830.1 443618974 14483632 complement(3814177..3814593) 1 NC_020163.1 Fructose-bisphosphate aldolase class II 3814593 14483632 APECO78_18335 Escherichia coli APEC O78 Fructose-bisphosphate aldolase class II YP_007382830.1 3814177 R 1274814 CDS YP_007382831.1 443618975 14483633 complement(3814512..3815591) 1 NC_020163.1 COG0191 Fructose/tagatose bisphosphate aldolase; Fructose-bisphosphate aldolase class II 3815591 14483633 APECO78_18340 Escherichia coli APEC O78 Fructose-bisphosphate aldolase class II YP_007382831.1 3814512 R 1274814 CDS YP_007382832.1 443618976 14483634 complement(3815806..3816969) 1 NC_020163.1 COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase 3816969 14483634 APECO78_18345 Escherichia coli APEC O78 phosphoglycerate kinase YP_007382832.1 3815806 R 1274814 CDS YP_007382833.1 443618977 14483635 complement(3817019..3818038) 1 NC_020163.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; erythrose 4-phosphate dehydrogenase 3818038 14483635 APECO78_18350 Escherichia coli APEC O78 erythrose 4-phosphate dehydrogenase YP_007382833.1 3817019 R 1274814 CDS YP_007382834.1 443618978 14483636 3818410..3818841 1 NC_020163.1 COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif; hypothetical protein 3818841 14483636 APECO78_18355 Escherichia coli APEC O78 hypothetical protein YP_007382834.1 3818410 D 1274814 CDS YP_007382835.1 443618979 14483637 3818864..3819442 1 NC_020163.1 transporter 3819442 14483637 APECO78_18360 Escherichia coli APEC O78 transporter YP_007382835.1 3818864 D 1274814 CDS YP_007382836.1 443618980 14483638 3819443..3820150 1 NC_020163.1 COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; lipoprotein 3820150 14483638 APECO78_18365 Escherichia coli APEC O78 lipoprotein YP_007382836.1 3819443 D 1274814 CDS YP_007382837.1 443618981 14483639 3820138..3820815 1 NC_020163.1 COG1122 ABC-type cobalt transport system, ATPase component; ABC transporter ATP-binding protein 3820815 14483639 APECO78_18370 Escherichia coli APEC O78 ABC transporter ATP-binding protein YP_007382837.1 3820138 D 1274814 CDS YP_007382838.1 443618982 14483640 3820809..3821486 1 NC_020163.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; putative ABC transporter ATP-binding subunit 3821486 14483640 APECO78_18375 Escherichia coli APEC O78 putative ABC transporter ATP-binding subunit YP_007382838.1 3820809 D 1274814 CDS YP_007382839.1 443618983 14483641 complement(3821458..3822171) 1 NC_020163.1 COG1072 Panthothenate kinase; nucleoside triphosphate hydrolase domain-containing protein 3822171 14483641 APECO78_18380 Escherichia coli APEC O78 nucleoside triphosphate hydrolase domain-containing protein YP_007382839.1 3821458 R 1274814 CDS YP_007382840.1 443618984 14483642 complement(3822168..3822677) 1 NC_020163.1 COG3722 Transcriptional regulator; DNA-binding transcriptional regulator 3822677 14483642 APECO78_18385 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007382840.1 3822168 R 1274814 CDS YP_007382841.1 443618985 14483643 complement(3822699..3823664) 1 NC_020163.1 COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; fructose-1,6-bisphosphatase II-like protein 3823664 14483643 APECO78_18390 Escherichia coli APEC O78 fructose-1,6-bisphosphatase II-like protein YP_007382841.1 3822699 R 1274814 CDS YP_007382842.1 443618986 14483644 complement(3823661..3824938) 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; dehydrogenase 3824938 14483644 APECO78_18395 Escherichia coli APEC O78 dehydrogenase YP_007382842.1 3823661 R 1274814 CDS YP_007382843.1 443618987 14483645 complement(3824953..3826341) 1 NC_020163.1 COG2213 Phosphotransferase system, mannitol-specific IIBC component; mannitol-specific PTS system enzyme II component 3826341 14483645 APECO78_18400 Escherichia coli APEC O78 mannitol-specific PTS system enzyme II component YP_007382843.1 3824953 R 1274814 CDS YP_007382844.1 443618988 14483646 complement(3826369..3826812) 1 NC_020163.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system mannitol-specific transporter subunit IIA 3826812 cmtB 14483646 cmtB Escherichia coli APEC O78 PTS system mannitol-specific transporter subunit IIA YP_007382844.1 3826369 R 1274814 CDS YP_007382845.1 443618989 14483647 complement(3827126..3829117) 1 NC_020163.1 COG0021 Transketolase; transketolase 3829117 14483647 APECO78_18410 Escherichia coli APEC O78 transketolase YP_007382845.1 3827126 R 1274814 CDS YP_007382846.1 443618990 14483648 3829395..3830153 1 NC_020163.1 COG0501 Zn-dependent protease with chaperone function; peptidase 3830153 14483648 APECO78_18415 Escherichia coli APEC O78 peptidase YP_007382846.1 3829395 D 1274814 CDS YP_007382847.1 443618991 14483649 complement(3830359..3831279) 1 NC_020163.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; agmatinase 3831279 14483649 APECO78_18420 Escherichia coli APEC O78 agmatinase YP_007382847.1 3830359 R 1274814 CDS YP_007382848.1 443618992 14483650 complement(3831415..3832146) 1 NC_020163.1 hypothetical protein 3832146 14483650 APECO78_18425 Escherichia coli APEC O78 hypothetical protein YP_007382848.1 3831415 R 1274814 CDS YP_007382849.1 443618993 14483651 complement(3832292..3834268) 1 NC_020163.1 COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase 3834268 14483651 APECO78_18430 Escherichia coli APEC O78 arginine decarboxylase YP_007382849.1 3832292 R 1274814 CDS YP_007382850.1 443618994 14483652 complement(3834277..3834423) 1 NC_020163.1 hypothetical protein 3834423 14483652 APECO78_18435 Escherichia coli APEC O78 hypothetical protein YP_007382850.1 3834277 R 1274814 CDS YP_007382851.1 443618995 14483653 complement(3834756..3835007) 1 NC_020163.1 hypothetical protein 3835007 14483653 APECO78_18440 Escherichia coli APEC O78 hypothetical protein YP_007382851.1 3834756 R 1274814 CDS YP_007382852.1 443618996 14483654 3835063..3836217 1 NC_020163.1 COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 3836217 14483654 APECO78_18445 Escherichia coli APEC O78 S-adenosylmethionine synthetase YP_007382852.1 3835063 D 1274814 CDS YP_007382853.1 443618997 14483655 3836653..3838047 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; D-galactose transporter GalP 3838047 14483655 APECO78_18450 Escherichia coli APEC O78 D-galactose transporter GalP YP_007382853.1 3836653 D 1274814 CDS YP_007382854.1 443618998 14483656 3838124..3838621 1 NC_020163.1 COG3091 Uncharacterized protein conserved in bacteria; hypothetical protein 3838621 14483656 APECO78_18455 Escherichia coli APEC O78 hypothetical protein YP_007382854.1 3838124 D 1274814 CDS YP_007382855.1 443618999 14483657 3838716..3839423 1 NC_020163.1 COG2356 Endonuclease I; DNA-specific endonuclease I 3839423 14483657 APECO78_18460 Escherichia coli APEC O78 DNA-specific endonuclease I YP_007382855.1 3838716 D 1274814 CDS YP_007382856.1 443619000 14483658 3839503..3840234 1 NC_020163.1 COG1385 Uncharacterized protein conserved in bacteria; 16S ribosomal RNA methyltransferase RsmE 3840234 14483658 APECO78_18465 Escherichia coli APEC O78 16S ribosomal RNA methyltransferase RsmE YP_007382856.1 3839503 D 1274814 CDS YP_007382857.1 443619001 14483659 3840247..3841197 1 NC_020163.1 COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); glutathione synthetase 3841197 14483659 APECO78_18470 Escherichia coli APEC O78 glutathione synthetase YP_007382857.1 3840247 D 1274814 CDS YP_007382858.1 443619002 14483660 3841306..3841869 1 NC_020163.1 COG1678 Putative transcriptional regulator; hypothetical protein 3841869 14483660 APECO78_18475 Escherichia coli APEC O78 hypothetical protein YP_007382858.1 3841306 D 1274814 CDS YP_007382859.1 443619003 14483661 3841869..3842285 1 NC_020163.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 3842285 14483661 APECO78_18480 Escherichia coli APEC O78 Holliday junction resolvase-like protein YP_007382859.1 3841869 D 1274814 CDS YP_007382860.1 443619004 14483662 complement(3842448..3843428) 1 NC_020163.1 COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT; transporter 3843428 14483662 APECO78_18485 Escherichia coli APEC O78 transporter YP_007382860.1 3842448 R 1274814 CDS YP_007382861.1 443619005 14483663 3843446..3844150 1 NC_020163.1 COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 3844150 14483663 APECO78_18490 Escherichia coli APEC O78 hypothetical protein YP_007382861.1 3843446 D 1274814 CDS YP_007382862.1 443619006 14483664 3844168..3844734 1 NC_020163.1 COG0762 Predicted integral membrane protein; hypothetical protein 3844734 14483664 APECO78_18495 Escherichia coli APEC O78 hypothetical protein YP_007382862.1 3844168 D 1274814 CDS YP_007382863.1 443619007 14483665 3844731..3845021 1 NC_020163.1 COG1872 Uncharacterized conserved protein; hypothetical protein 3845021 14483665 APECO78_18500 Escherichia coli APEC O78 hypothetical protein YP_007382863.1 3844731 D 1274814 CDS YP_007382864.1 443619008 14483666 3845029..3845622 1 NC_020163.1 COG0127 Xanthosine triphosphate pyrophosphatase; dITP/XTP pyrophosphatase 3845622 14483666 APECO78_18505 Escherichia coli APEC O78 dITP/XTP pyrophosphatase YP_007382864.1 3845029 D 1274814 CDS YP_007382865.1 443619009 14483667 3845615..3846751 1 NC_020163.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; HemN family oxidoreductase 3846751 14483667 APECO78_18510 Escherichia coli APEC O78 HemN family oxidoreductase YP_007382865.1 3845615 D 1274814 CDS YP_007382866.1 443619010 14483668 complement(3846906..3847913) 1 NC_020163.1 hypothetical protein 3847913 14483668 APECO78_18515 Escherichia coli APEC O78 hypothetical protein YP_007382866.1 3846906 R 1274814 CDS YP_007382867.1 443619011 14483669 complement(3848030..3849076) 1 NC_020163.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II 3849076 ansB 14483669 ansB Escherichia coli APEC O78 L-asparaginase II YP_007382867.1 3848030 R 1274814 CDS YP_007382868.1 443619012 14483670 complement(3849252..3849971) 1 NC_020163.1 hypothetical protein 3849971 14483670 APECO78_18525 Escherichia coli APEC O78 hypothetical protein YP_007382868.1 3849252 R 1274814 CDS YP_007382869.1 443619013 14483671 complement(3849992..3850132) 1 NC_020163.1 hypothetical protein 3850132 14483671 APECO78_18530 Escherichia coli APEC O78 hypothetical protein YP_007382869.1 3849992 R 1274814 CDS YP_007382870.1 443619014 14483672 complement(3850155..3850481) 1 NC_020163.1 COG3171 Uncharacterized protein conserved in bacteria; hypothetical protein 3850481 14483672 APECO78_18535 Escherichia coli APEC O78 hypothetical protein YP_007382870.1 3850155 R 1274814 CDS YP_007382871.1 443619015 14483673 complement(3850481..3851200) 1 NC_020163.1 COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 3851200 14483673 APECO78_18540 Escherichia coli APEC O78 tRNA (guanine-N(7)-)-methyltransferase YP_007382871.1 3850481 R 1274814 CDS YP_007382872.1 443619016 14483674 3851361..3852413 1 NC_020163.1 COG1194 A/G-specific DNA glycosylase; adenine DNA glycosylase 3852413 14483674 APECO78_18545 Escherichia coli APEC O78 adenine DNA glycosylase YP_007382872.1 3851361 D 1274814 CDS YP_007382873.1 443619017 14483675 3852441..3852716 1 NC_020163.1 COG2924 Fe-S cluster protector protein; oxidative damage protection protein 3852716 14483675 APECO78_18550 Escherichia coli APEC O78 oxidative damage protection protein YP_007382873.1 3852441 D 1274814 CDS YP_007382874.1 443619018 14483676 3852781..3853860 1 NC_020163.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); murein transglycosylase C 3853860 mltC 14483676 mltC Escherichia coli APEC O78 murein transglycosylase C YP_007382874.1 3852781 D 1274814 CDS YP_007382875.1 443619019 14483677 3854062..3855318 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; nucleoside permease 3855318 14483677 APECO78_18560 Escherichia coli APEC O78 nucleoside permease YP_007382875.1 3854062 D 1274814 CDS YP_007382876.1 443619020 14483678 complement(3855368..3857503) 1 NC_020163.1 COG1982 Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 3857503 14483678 APECO78_18565 Escherichia coli APEC O78 ornithine decarboxylase YP_007382876.1 3855368 R 1274814 CDS YP_007382877.1 443619021 14483679 3857901..3858608 1 NC_020163.1 COG1811 Uncharacterized membrane protein, possible Na+ channel or pump; hypothetical protein 3858608 14483679 APECO78_18570 Escherichia coli APEC O78 hypothetical protein YP_007382877.1 3857901 D 1274814 CDS YP_007382878.1 443619022 14484649 complement(3858938..3859474) 1 NC_020163.1 COG3149 Type II secretory pathway, component PulM; general secretion pathway protein YghD 3859474 14484649 APECO78_18575 Escherichia coli APEC O78 general secretion pathway protein YghD YP_007382878.1 3858938 R 1274814 CDS YP_007382879.1 443619023 14483681 complement(3859476..3860654) 1 NC_020163.1 COG3297 Type II secretory pathway, component PulL; GspL-like protein 3860654 14483681 APECO78_18580 Escherichia coli APEC O78 GspL-like protein YP_007382879.1 3859476 R 1274814 CDS YP_007382880.1 443619024 14483682 complement(3860651..3861628) 1 NC_020163.1 COG3156 Type II secretory pathway, component PulK; General secretion pathway protein K 3861628 14483682 APECO78_18585 Escherichia coli APEC O78 General secretion pathway protein K YP_007382880.1 3860651 R 1274814 CDS YP_007382881.1 443619025 14483683 complement(3861631..3862230) 1 NC_020163.1 COG4795 Type II secretory pathway, component PulJ; type II secretion protein GspJ 3862230 14483683 APECO78_18590 Escherichia coli APEC O78 type II secretion protein GspJ YP_007382881.1 3861631 R 1274814 CDS YP_007382882.1 443619026 14483684 complement(3862227..3862598) 1 NC_020163.1 COG2165 Type II secretory pathway, pseudopilin PulG; type II secretion protein 3862598 14483684 APECO78_18595 Escherichia coli APEC O78 type II secretion protein YP_007382882.1 3862227 R 1274814 CDS YP_007382883.1 443619027 14483685 complement(3862595..3863158) 1 NC_020163.1 COG2165 Type II secretory pathway, pseudopilin PulG; type II secretion protein GspH 3863158 14483685 APECO78_18600 Escherichia coli APEC O78 type II secretion protein GspH YP_007382883.1 3862595 R 1274814 CDS YP_007382884.1 443619028 14483686 complement(3863162..3863617) 1 NC_020163.1 COG2165 Type II secretory pathway, pseudopilin PulG; type II secretion protein 3863617 14483686 APECO78_18605 Escherichia coli APEC O78 type II secretion protein YP_007382884.1 3863162 R 1274814 CDS YP_007382885.1 443619029 14483687 complement(3864856..3866349) 1 NC_020163.1 COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; general secretion pathway protein E 3866349 14483687 APECO78_18620 Escherichia coli APEC O78 general secretion pathway protein E YP_007382885.1 3864856 R 1274814 CDS YP_007382886.1 443619030 14483688 complement(3866349..3867308) 1 NC_020163.1 COG1450 Type II secretory pathway, component PulD; General secretion pathway protein D 3867308 14483688 APECO78_18625 Escherichia coli APEC O78 General secretion pathway protein D YP_007382886.1 3866349 R 1274814 CDS YP_007382887.1 443619031 14483689 complement(3867305..3867721) 1 NC_020163.1 COG1620 L-lactate permease; glycolate transporter 3867721 14483689 APECO78_18630 Escherichia coli APEC O78 glycolate transporter YP_007382887.1 3867305 R 1274814 CDS YP_007382888.1 443619032 14483690 complement(3868077..3870248) 1 NC_020163.1 COG2225 Malate synthase; malate synthase G 3870248 14483690 APECO78_18635 Escherichia coli APEC O78 malate synthase G YP_007382888.1 3868077 R 1274814 CDS YP_007382889.1 443619033 14483691 complement(3870270..3870674) 1 NC_020163.1 COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol; hypothetical protein 3870674 14483691 APECO78_18640 Escherichia coli APEC O78 hypothetical protein YP_007382889.1 3870270 R 1274814 CDS YP_007382890.1 443619034 14483692 complement(3870679..3871902) 1 NC_020163.1 COG0247 Fe-S oxidoreductase; glycolate oxidase iron-sulfur subunit 3871902 glcF 14483692 glcF Escherichia coli APEC O78 glycolate oxidase iron-sulfur subunit YP_007382890.1 3870679 R 1274814 CDS YP_007382891.1 443619035 14483693 complement(3871913..3872965) 1 NC_020163.1 COG0277 FAD/FMN-containing dehydrogenases; glycolate oxidase FAD binding subunit 3872965 glcE 14483693 glcE Escherichia coli APEC O78 glycolate oxidase FAD binding subunit YP_007382891.1 3871913 R 1274814 CDS YP_007382892.1 443619036 14483694 complement(3872965..3874464) 1 NC_020163.1 COG0277 FAD/FMN-containing dehydrogenases; glycolate oxidase subunit GlcD 3874464 14483694 APECO78_18655 Escherichia coli APEC O78 glycolate oxidase subunit GlcD YP_007382892.1 3872965 R 1274814 CDS YP_007382893.1 443619037 14483695 3874715..3875479 1 NC_020163.1 COG2186 Transcriptional regulators; DNA-binding transcriptional regulator GlcC 3875479 14483695 APECO78_18660 Escherichia coli APEC O78 DNA-binding transcriptional regulator GlcC YP_007382893.1 3874715 D 1274814 CDS YP_007382894.1 443619038 14483696 3877032..3878720 1 NC_020163.1 COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; acyl-CoA synthetase 3878720 14483696 APECO78_18665 Escherichia coli APEC O78 acyl-CoA synthetase YP_007382894.1 3877032 D 1274814 CDS YP_007382895.1 443619039 14483697 3878717..3879631 1 NC_020163.1 COG0702 Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein 3879631 14483697 APECO78_18670 Escherichia coli APEC O78 hypothetical protein YP_007382895.1 3878717 D 1274814 CDS YP_007382896.1 443619040 14483698 3879663..3879911 1 NC_020163.1 COG0236 Acyl carrier protein; hypothetical protein 3879911 14483698 APECO78_18675 Escherichia coli APEC O78 hypothetical protein YP_007382896.1 3879663 D 1274814 CDS YP_007382897.1 443619041 14483699 3879911..3881083 1 NC_020163.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; hypothetical protein 3881083 14483699 APECO78_18680 Escherichia coli APEC O78 hypothetical protein YP_007382897.1 3879911 D 1274814 CDS YP_007382898.1 443619042 14483700 complement(3881119..3882198) 1 NC_020163.1 COG0795 Predicted permeases; hypothetical protein 3882198 14483700 APECO78_18685 Escherichia coli APEC O78 hypothetical protein YP_007382898.1 3881119 R 1274814 CDS YP_007382899.1 443619043 14483701 complement(3882195..3883265) 1 NC_020163.1 COG0795 Predicted permeases; Permease YjgP/YjgQ family protein precursor 3883265 14483701 APECO78_18690 Escherichia coli APEC O78 Permease YjgP/YjgQ family protein precursor YP_007382899.1 3882195 R 1274814 CDS YP_007382900.1 443619044 14483702 complement(3883296..3883856) 1 NC_020163.1 COG3054 Predicted transcriptional regulator; ybl137 3883856 14483702 APECO78_18695 Escherichia coli APEC O78 ybl137 YP_007382900.1 3883296 R 1274814 CDS YP_007382901.1 443619045 14483703 complement(3883868..3884692) 1 NC_020163.1 COG0372 Citrate synthase; hypothetical protein 3884692 14483703 APECO78_18700 Escherichia coli APEC O78 hypothetical protein YP_007382901.1 3883868 R 1274814 CDS YP_007382902.1 443619046 14483704 complement(3884692..3886041) 1 NC_020163.1 COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; inner membrane protein 3886041 14483704 APECO78_18705 Escherichia coli APEC O78 inner membrane protein YP_007382902.1 3884692 R 1274814 CDS YP_007382903.1 443619047 14483705 complement(3886087..3886845) 1 NC_020163.1 COG0178 Excinuclease ATPase subunit; hypothetical protein 3886845 14483705 APECO78_18710 Escherichia coli APEC O78 hypothetical protein YP_007382903.1 3886087 R 1274814 CDS YP_007382904.1 443619048 14483706 complement(3886877..3887590) 1 NC_020163.1 COG0125 Thymidylate kinase; hypothetical protein 3887590 14483706 APECO78_18715 Escherichia coli APEC O78 hypothetical protein YP_007382904.1 3886877 R 1274814 CDS YP_007382905.1 443619049 14483707 3887764..3888456 1 NC_020163.1 COG0125 Thymidylate kinase; hypothetical protein 3888456 14483707 APECO78_18720 Escherichia coli APEC O78 hypothetical protein YP_007382905.1 3887764 D 1274814 CDS YP_007382906.1 443619050 14483708 complement(3888505..3890004) 1 NC_020163.1 COG0306 Phosphate/sulphate permeases; phosphate transporter 3890004 14483708 APECO78_18725 Escherichia coli APEC O78 phosphate transporter YP_007382906.1 3888505 R 1274814 CDS YP_007382907.1 443619051 14483709 complement(3890296..3892155) 1 NC_020163.1 COG0754 Glutathionylspermidine synthase; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3892155 14483709 APECO78_18730 Escherichia coli APEC O78 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_007382907.1 3890296 R 1274814 CDS YP_007382908.1 443619052 14483710 3892360..3893226 1 NC_020163.1 COG0625 Glutathione S-transferase; S-transferase 3893226 14483710 APECO78_18735 Escherichia coli APEC O78 S-transferase YP_007382908.1 3892360 D 1274814 CDS YP_007382909.1 443619053 14483711 complement(3893349..3893597) 1 NC_020163.1 COG0298 Hydrogenase maturation factor; hydrogenase 2 accessory protein HypG 3893597 14483711 APECO78_18740 Escherichia coli APEC O78 hydrogenase 2 accessory protein HypG YP_007382909.1 3893349 R 1274814 CDS YP_007382910.1 443619054 14483712 complement(3893610..3893951) 1 NC_020163.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein HybF 3893951 14483712 APECO78_18745 Escherichia coli APEC O78 hydrogenase nickel incorporation protein HybF YP_007382910.1 3893610 R 1274814 CDS YP_007382911.1 443619055 14483713 complement(3893944..3894432) 1 NC_020163.1 hydrogenase 2-specific chaperone 3894432 14483713 APECO78_18750 Escherichia coli APEC O78 hydrogenase 2-specific chaperone YP_007382911.1 3893944 R 1274814 CDS YP_007382912.1 443619056 14483714 complement(3894425..3894919) 1 NC_020163.1 COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase 2 maturation endopeptidase 3894919 hybD 14483714 hybD Escherichia coli APEC O78 hydrogenase 2 maturation endopeptidase YP_007382912.1 3894425 R 1274814 CDS YP_007382913.1 443619057 14483715 complement(3894919..3896622) 1 NC_020163.1 COG0374 Ni,Fe-hydrogenase I large subunit; hydrogenase 2 large subunit 3896622 14483715 APECO78_18760 Escherichia coli APEC O78 hydrogenase 2 large subunit YP_007382913.1 3894919 R 1274814 CDS YP_007382914.1 443619058 14483716 complement(3896619..3897797) 1 NC_020163.1 COG5557 Polysulphide reductase; hydrogenase 2 b cytochrome subunit 3897797 14483716 APECO78_18765 Escherichia coli APEC O78 hydrogenase 2 b cytochrome subunit YP_007382914.1 3896619 R 1274814 CDS YP_007382915.1 443619059 14483717 complement(3897787..3898773) 1 NC_020163.1 COG0437 Fe-S-cluster-containing hydrogenase components 1; hydrogenase 2 protein HybA 3898773 14483717 APECO78_18770 Escherichia coli APEC O78 hydrogenase 2 protein HybA YP_007382915.1 3897787 R 1274814 CDS YP_007382916.1 443619060 14483718 complement(3898776..3899894) 1 NC_020163.1 COG1740 Ni,Fe-hydrogenase I small subunit; hydrogenase 2 small subunit 3899894 14483718 APECO78_18775 Escherichia coli APEC O78 hydrogenase 2 small subunit YP_007382916.1 3898776 R 1274814 CDS YP_007382917.1 443619061 14483719 complement(3900083..3900370) 1 NC_020163.1 hypothetical protein 3900370 14483719 APECO78_18780 Escherichia coli APEC O78 hypothetical protein YP_007382917.1 3900083 R 1274814 CDS YP_007382918.1 443619062 14483720 complement(3900489..3901376) 1 NC_020163.1 COG0412 Dienelactone hydrolase and related enzymes; hypothetical protein 3901376 14483720 APECO78_18785 Escherichia coli APEC O78 hypothetical protein YP_007382918.1 3900489 R 1274814 CDS YP_007382919.1 443619063 14483721 3901533..3902573 1 NC_020163.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); L-glyceraldehyde 3-phosphate reductase 3902573 14483721 APECO78_18790 Escherichia coli APEC O78 L-glyceraldehyde 3-phosphate reductase YP_007382919.1 3901533 D 1274814 CDS YP_007382920.1 443619064 14483722 complement(3902613..3903107) 1 NC_020163.1 COG2862 Predicted membrane protein; hypothetical protein 3903107 14483722 APECO78_18795 Escherichia coli APEC O78 hypothetical protein YP_007382920.1 3902613 R 1274814 CDS YP_007382921.1 443619065 14483723 3903298..3904182 1 NC_020163.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); oxidoreductase 3904182 14483723 APECO78_18800 Escherichia coli APEC O78 oxidoreductase YP_007382921.1 3903298 D 1274814 CDS YP_007382922.1 443619066 14483724 complement(3904255..3904446) 1 NC_020163.1 hypothetical protein 3904446 14483724 APECO78_18805 Escherichia coli APEC O78 hypothetical protein YP_007382922.1 3904255 R 1274814 CDS YP_007382923.1 443619067 14483725 complement(3904454..3904879) 1 NC_020163.1 COG0848 Biopolymer transport protein; biopolymer transport protein ExbD 3904879 14483725 APECO78_18810 Escherichia coli APEC O78 biopolymer transport protein ExbD YP_007382923.1 3904454 R 1274814 CDS YP_007382924.1 443619068 14483726 complement(3904886..3905620) 1 NC_020163.1 COG0811 Biopolymer transport proteins; biopolymer transport protein ExbB 3905620 14483726 APECO78_18815 Escherichia coli APEC O78 biopolymer transport protein ExbB YP_007382924.1 3904886 R 1274814 CDS YP_007382925.1 443619069 14483727 complement(3905743..3905829) 1 NC_020163.1 hypothetical protein 3905829 14483727 APECO78_18820 Escherichia coli APEC O78 hypothetical protein YP_007382925.1 3905743 R 1274814 CDS YP_007382926.1 443619070 14483728 3905872..3907059 1 NC_020163.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine beta-lyase 3907059 14483728 APECO78_18825 Escherichia coli APEC O78 cystathionine beta-lyase YP_007382926.1 3905872 D 1274814 CDS YP_007382927.1 443619071 14483729 3907199..3907858 1 NC_020163.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 3907858 14483729 APECO78_18830 Escherichia coli APEC O78 hypothetical protein YP_007382927.1 3907199 D 1274814 CDS YP_007382928.1 443619072 14483730 complement(3907898..3908854) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator, ARAC-type 3908854 14483730 APECO78_18835 Escherichia coli APEC O78 DNA-binding transcriptional regulator, ARAC-type YP_007382928.1 3907898 R 1274814 CDS YP_007382929.1 443619073 14483731 3908991..3910154 1 NC_020163.1 COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family; aldehyde reductase 3910154 14483731 APECO78_18840 Escherichia coli APEC O78 aldehyde reductase YP_007382929.1 3908991 D 1274814 CDS YP_007382930.1 443619074 14483732 3910259..3911086 1 NC_020163.1 COG0656 Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconate reductase A 3911086 14483732 APECO78_18845 Escherichia coli APEC O78 2,5-diketo-D-gluconate reductase A YP_007382930.1 3910259 D 1274814 CDS YP_007382931.1 443619075 14483733 3911286..3912212 1 NC_020163.1 hypothetical protein 3912212 14483733 APECO78_18850 Escherichia coli APEC O78 hypothetical protein YP_007382931.1 3911286 D 1274814 CDS YP_007382932.1 443619076 14483734 3912263..3912520 1 NC_020163.1 outer membrane lipoprotein 3912520 14483734 APECO78_18855 Escherichia coli APEC O78 outer membrane lipoprotein YP_007382932.1 3912263 D 1274814 CDS YP_007382933.1 443619077 14483735 complement(3912563..3914782) 1 NC_020163.1 COG1032 Fe-S oxidoreductase; hypothetical protein 3914782 14483735 APECO78_18860 Escherichia coli APEC O78 hypothetical protein YP_007382933.1 3912563 R 1274814 CDS YP_007382934.1 443619078 14483736 complement(3914893..3916305) 1 NC_020163.1 COG2132 Putative multicopper oxidases; FtsI repressor 3916305 14483736 APECO78_18865 Escherichia coli APEC O78 FtsI repressor YP_007382934.1 3914893 R 1274814 CDS YP_007382935.1 443619079 14483737 complement(3916380..3917117) 1 NC_020163.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3917117 14483737 APECO78_18870 Escherichia coli APEC O78 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_007382935.1 3916380 R 1274814 CDS YP_007382936.1 443619080 14483738 complement(3917351..3919609) 1 NC_020163.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA topoisomerase IV subunit A 3919609 14483738 APECO78_18875 Escherichia coli APEC O78 DNA topoisomerase IV subunit A YP_007382936.1 3917351 R 1274814 CDS YP_007382937.1 443619081 14483739 complement(3919747..3921354) 1 NC_020163.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; hypothetical protein 3921354 14483739 APECO78_18880 Escherichia coli APEC O78 hypothetical protein YP_007382937.1 3919747 R 1274814 CDS YP_007382938.1 443619082 14483740 complement(3921487..3921882) 1 NC_020163.1 COG1396 Predicted transcriptional regulators; HTH-type transcriptional regulator ygiT 3921882 14483740 APECO78_18885 Escherichia coli APEC O78 HTH-type transcriptional regulator ygiT YP_007382938.1 3921487 R 1274814 CDS YP_007382939.1 443619083 14483741 complement(3921884..3922180) 1 NC_020163.1 hypothetical protein 3922180 14483741 APECO78_18890 Escherichia coli APEC O78 hypothetical protein YP_007382939.1 3921884 R 1274814 CDS YP_007382940.1 443619084 14483742 complement(3922385..3922867) 1 NC_020163.1 COG3449 DNA gyrase inhibitor; transcriptional regulator 3922867 14483742 APECO78_18895 Escherichia coli APEC O78 transcriptional regulator YP_007382940.1 3922385 R 1274814 CDS YP_007382941.1 443619085 14483743 complement(3922920..3923312) 1 NC_020163.1 COG3111 Uncharacterized conserved protein; hypothetical protein 3923312 14483743 APECO78_18900 Escherichia coli APEC O78 hypothetical protein YP_007382941.1 3922920 R 1274814 CDS YP_007382942.1 443619086 14483744 3923463..3924122 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; DNA-binding transcriptional regulator QseB 3924122 14483744 APECO78_18905 Escherichia coli APEC O78 DNA-binding transcriptional regulator QseB YP_007382942.1 3923463 D 1274814 CDS YP_007382943.1 443619087 14483745 3924119..3925468 1 NC_020163.1 COG0642 Signal transduction histidine kinase; sensor protein QseC 3925468 14483745 APECO78_18910 Escherichia coli APEC O78 sensor protein QseC YP_007382943.1 3924119 D 1274814 CDS YP_007382944.1 443619088 14483746 3925578..3926159 1 NC_020163.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); NADPH quinone reductase MdaB 3926159 14483746 APECO78_18915 Escherichia coli APEC O78 NADPH quinone reductase MdaB YP_007382944.1 3925578 D 1274814 CDS YP_007382945.1 443619089 14483747 3926190..3926504 1 NC_020163.1 COG1359 Uncharacterized conserved protein; hypothetical protein 3926504 14483747 APECO78_18920 Escherichia coli APEC O78 hypothetical protein YP_007382945.1 3926190 D 1274814 CDS YP_007382946.1 443619090 14483748 complement(3926548..3927192) 1 NC_020163.1 COG2211 Na+/melibiose symporter and related transporters; Major facilitator superfamily domain-containing protein 2 3927192 14483748 APECO78_18925 Escherichia coli APEC O78 Major facilitator superfamily domain-containing protein 2 YP_007382946.1 3926548 R 1274814 CDS YP_007382947.1 443619091 14483749 complement(3927199..3927879) 1 NC_020163.1 COG2211 Na+/melibiose symporter and related transporters; sugar transport protein 3927879 14483749 APECO78_18930 Escherichia coli APEC O78 sugar transport protein YP_007382947.1 3927199 R 1274814 CDS YP_007382948.1 443619092 14483750 3928166..3928918 1 NC_020163.1 COG2188 Transcriptional regulators; GntR family transcriptional regulator 3928918 14483750 APECO78_18935 Escherichia coli APEC O78 GntR family transcriptional regulator YP_007382948.1 3928166 D 1274814 CDS YP_007382949.1 443619093 14483751 3928932..3930008 1 NC_020163.1 COG1397 ADP-ribosylglycohydrolase; hypothetical protein 3930008 14483751 APECO78_18940 Escherichia coli APEC O78 hypothetical protein YP_007382949.1 3928932 D 1274814 CDS YP_007382950.1 443619094 14483752 3930008..3931006 1 NC_020163.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; hypothetical protein 3931006 14483752 APECO78_18945 Escherichia coli APEC O78 hypothetical protein YP_007382950.1 3930008 D 1274814 CDS YP_007382951.1 443619095 14483753 3931011..3931925 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; ribokinase 3931925 14483753 APECO78_18950 Escherichia coli APEC O78 ribokinase YP_007382951.1 3931011 D 1274814 CDS YP_007382952.1 443619096 14483754 3931953..3933077 1 NC_020163.1 COG4222 Uncharacterized protein conserved in bacteria; hypothetical protein 3933077 14483754 APECO78_18955 Escherichia coli APEC O78 hypothetical protein YP_007382952.1 3931953 D 1274814 CDS YP_007382953.1 443619097 14483755 3933212..3933907 1 NC_020163.1 hypothetical protein 3933907 14483755 APECO78_18960 Escherichia coli APEC O78 hypothetical protein YP_007382953.1 3933212 D 1274814 CDS YP_007382954.1 443619098 14483756 3933921..3934790 1 NC_020163.1 outer membrane protein 3934790 14483756 APECO78_18965 Escherichia coli APEC O78 outer membrane protein YP_007382954.1 3933921 D 1274814 CDS YP_007382955.1 443619099 14483757 complement(3934835..3936727) 1 NC_020163.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA topoisomerase IV subunit B 3936727 14483757 APECO78_18970 Escherichia coli APEC O78 DNA topoisomerase IV subunit B YP_007382955.1 3934835 R 1274814 CDS YP_007382956.1 443619100 14483758 complement(3936756..3937337) 1 NC_020163.1 COG3150 Predicted esterase; esterase YqiA 3937337 14483758 APECO78_18975 Escherichia coli APEC O78 esterase YqiA YP_007382956.1 3936756 R 1274814 CDS YP_007382957.1 443619101 14483759 complement(3937337..3938164) 1 NC_020163.1 COG1409 Predicted phosphohydrolases; cyclic 3',5'-adenosine monophosphate phosphodiesterase 3938164 14483759 APECO78_18980 Escherichia coli APEC O78 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_007382957.1 3937337 R 1274814 CDS YP_007382958.1 443619102 14483760 complement(3938189..3938611) 1 NC_020163.1 COG3151 Uncharacterized protein conserved in bacteria; dehydrogenase 3938611 14483760 APECO78_18985 Escherichia coli APEC O78 dehydrogenase YP_007382958.1 3938189 R 1274814 CDS YP_007382959.1 443619103 14483761 complement(3938612..3939241) 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; ADP-ribose pyrophosphatase NudF 3939241 14483761 APECO78_18990 Escherichia coli APEC O78 ADP-ribose pyrophosphatase NudF YP_007382959.1 3938612 R 1274814 CDS YP_007382960.1 443619104 14483762 3939446..3940927 1 NC_020163.1 COG1538 Outer membrane protein; outer membrane channel protein 3940927 14483762 APECO78_18995 Escherichia coli APEC O78 outer membrane channel protein YP_007382960.1 3939446 D 1274814 CDS YP_007382961.1 443619105 14483763 3941075..3941746 1 NC_020163.1 COG5463 Predicted integral membrane protein; hypothetical protein 3941746 14483763 APECO78_19000 Escherichia coli APEC O78 hypothetical protein YP_007382961.1 3941075 D 1274814 CDS YP_007382962.1 443619106 14483764 3941752..3942912 1 NC_020163.1 COG0754 Glutathionylspermidine synthase; putative synthetase/amidase 3942912 14483764 APECO78_19005 Escherichia coli APEC O78 putative synthetase/amidase YP_007382962.1 3941752 D 1274814 CDS YP_007382963.1 443619107 14483765 complement(3942950..3943738) 1 NC_020163.1 COG3384 Uncharacterized conserved protein; hypothetical protein 3943738 14483765 APECO78_19010 Escherichia coli APEC O78 hypothetical protein YP_007382963.1 3942950 R 1274814 CDS YP_007382964.1 443619108 14483766 3943881..3944654 1 NC_020163.1 COG0428 Predicted divalent heavy-metal cations transporter; zinc transporter ZupT 3944654 14483766 APECO78_19015 Escherichia coli APEC O78 zinc transporter ZupT YP_007382964.1 3943881 D 1274814 CDS YP_007382965.1 443619109 14483767 complement(3944712..3944882) 1 NC_020163.1 hypothetical protein 3944882 14483767 APECO78_19020 Escherichia coli APEC O78 hypothetical protein YP_007382965.1 3944712 R 1274814 CDS YP_007382966.1 443619110 14483768 complement(3945143..3945796) 1 NC_020163.1 COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3945796 14483768 APECO78_19025 Escherichia coli APEC O78 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_007382966.1 3945143 R 1274814 CDS YP_007382967.1 443619111 14483769 3946170..3946460 1 NC_020163.1 COG2960 Uncharacterized protein conserved in bacteria; hypothetical protein 3946460 14483769 APECO78_19030 Escherichia coli APEC O78 hypothetical protein YP_007382967.1 3946170 D 1274814 CDS YP_007382968.1 443619112 14483770 3946743..3947294 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein 3947294 14483770 APECO78_19035 Escherichia coli APEC O78 fimbrial protein YP_007382968.1 3946743 D 1274814 CDS YP_007382969.1 443619113 14483771 3947354..3949858 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein 3949858 14483771 APECO78_19040 Escherichia coli APEC O78 outer membrane usher protein YP_007382969.1 3947354 D 1274814 CDS YP_007382970.1 443619114 14483772 3949874..3950623 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; putative fimbrial chaperone 3950623 14483772 APECO78_19045 Escherichia coli APEC O78 putative fimbrial chaperone YP_007382970.1 3949874 D 1274814 CDS YP_007382971.1 443619115 14483773 3950625..3951689 1 NC_020163.1 hypothetical protein 3951689 14483773 APECO78_19050 Escherichia coli APEC O78 hypothetical protein YP_007382971.1 3950625 D 1274814 CDS YP_007382972.1 443619116 14483774 complement(3951732..3951932) 1 NC_020163.1 glycogen synthesis protein GlgS 3951932 14483774 APECO78_19055 Escherichia coli APEC O78 glycogen synthesis protein GlgS YP_007382972.1 3951732 R 1274814 CDS YP_007382973.1 443619117 14483775 3952201..3952830 1 NC_020163.1 inner membrane protein 3952830 14483775 APECO78_19060 Escherichia coli APEC O78 inner membrane protein YP_007382973.1 3952201 D 1274814 CDS YP_007382974.1 443619118 14483776 3952857..3954518 1 NC_020163.1 COG2268 Uncharacterized protein conserved in bacteria; hypothetical protein 3954518 14483776 APECO78_19065 Escherichia coli APEC O78 hypothetical protein YP_007382974.1 3952857 D 1274814 CDS YP_007382975.1 443619119 14483777 complement(3955312..3956745) 1 NC_020163.1 COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3956745 14483777 APECO78_19070 Escherichia coli APEC O78 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_007382975.1 3955312 R 1274814 CDS YP_007382976.1 443619120 14483778 complement(3956793..3959633) 1 NC_020163.1 COG1391 Glutamine synthetase adenylyltransferase; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3959633 14483778 APECO78_19075 Escherichia coli APEC O78 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_007382976.1 3956793 R 1274814 CDS YP_007382977.1 443619121 14483779 complement(3959656..3960957) 1 NC_020163.1 COG3025 Uncharacterized conserved protein; putative adenylate cyclase 3960957 14483779 APECO78_19080 Escherichia coli APEC O78 putative adenylate cyclase YP_007382977.1 3959656 R 1274814 CDS YP_007382978.1 443619122 14483780 3961199..3961819 1 NC_020163.1 COG3103 SH3 domain protein; putative signal transduction protein 3961819 14483780 APECO78_19085 Escherichia coli APEC O78 putative signal transduction protein YP_007382978.1 3961199 D 1274814 CDS YP_007382979.1 443619123 14483781 3961883..3963121 1 NC_020163.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; multifunctional CCA protein 3963121 14483781 APECO78_19090 Escherichia coli APEC O78 multifunctional CCA protein YP_007382979.1 3961883 D 1274814 CDS YP_007382980.1 443619124 14483782 complement(3963302..3964123) 1 NC_020163.1 COG1968 Uncharacterized bacitracin resistance protein; undecaprenyl pyrophosphate phosphatase 3964123 14483782 APECO78_19095 Escherichia coli APEC O78 undecaprenyl pyrophosphate phosphatase YP_007382980.1 3963302 R 1274814 CDS YP_007382981.1 443619125 14483783 complement(3964213..3964581) 1 NC_020163.1 COG1539 Dihydroneopterin aldolase; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3964581 folB 14483783 folB Escherichia coli APEC O78 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_007382981.1 3964213 R 1274814 CDS YP_007382982.1 443619126 14483784 3964686..3965303 1 NC_020163.1 COG0344 Predicted membrane protein; glycerol-3-phosphate acyltransferase PlsY 3965303 14483784 APECO78_19105 Escherichia coli APEC O78 glycerol-3-phosphate acyltransferase PlsY YP_007382982.1 3964686 D 1274814 CDS YP_007382983.1 443619127 14483785 complement(3965316..3966248) 1 NC_020163.1 COG0583 Transcriptional regulator; transcriptional activator TtdR 3966248 14483785 APECO78_19110 Escherichia coli APEC O78 transcriptional activator TtdR YP_007382983.1 3965316 R 1274814 CDS YP_007382984.1 443619128 14483786 3966455..3967366 1 NC_020163.1 COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; tartrate dehydratase subunit alpha 3967366 14483786 APECO78_19115 Escherichia coli APEC O78 tartrate dehydratase subunit alpha YP_007382984.1 3966455 D 1274814 CDS YP_007382985.1 443619129 14483787 3967363..3967968 1 NC_020163.1 COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain; L-tartrate dehydratase beta subunit 3967968 14483787 APECO78_19120 Escherichia coli APEC O78 L-tartrate dehydratase beta subunit YP_007382985.1 3967363 D 1274814 CDS YP_007382986.1 443619130 14483788 3968016..3969479 1 NC_020163.1 COG0471 Di- and tricarboxylate transporters; L-tartrate/succinate antiporter 3969479 14483788 APECO78_19125 Escherichia coli APEC O78 L-tartrate/succinate antiporter YP_007382986.1 3968016 D 1274814 CDS YP_007382987.1 443619131 14483789 complement(3969522..3970535) 1 NC_020163.1 COG0533 Metal-dependent proteases with possible chaperone activity; O-sialoglycoprotein endopeptidase 3970535 14483789 APECO78_19130 Escherichia coli APEC O78 O-sialoglycoprotein endopeptidase YP_007382987.1 3969522 R 1274814 CDS YP_007382988.1 443619132 14483790 3970773..3970988 1 NC_020163.1 COG0828 Ribosomal protein S21; 30S ribosomal protein S21 3970988 14483790 APECO78_19135 Escherichia coli APEC O78 30S ribosomal protein S21 YP_007382988.1 3970773 D 1274814 CDS YP_007382989.1 443619133 14483791 3971099..3972844 1 NC_020163.1 COG0358 DNA primase (bacterial type); DNA primase 3972844 14483791 APECO78_19140 Escherichia coli APEC O78 DNA primase YP_007382989.1 3971099 D 1274814 CDS YP_007382990.1 443619134 14483792 3973039..3974880 1 NC_020163.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma-70 factor 3974880 14483792 APECO78_19145 Escherichia coli APEC O78 RNA polymerase sigma-70 factor YP_007382990.1 3973039 D 1274814 CDS YP_007382991.1 443619135 14483793 complement(3974959..3975465) 1 NC_020163.1 COG3663 G:T/U mismatch-specific DNA glycosylase; G/U mismatch-specific DNA glycosylase 3975465 14483793 APECO78_19150 Escherichia coli APEC O78 G/U mismatch-specific DNA glycosylase YP_007382991.1 3974959 R 1274814 CDS YP_007382992.1 443619136 14484650 complement(3975719..3976483) 1 NC_020163.1 COG2375 Siderophore-interacting protein; siderophore-interacting protein 3976483 14484650 APECO78_19155 Escherichia coli APEC O78 siderophore-interacting protein YP_007382992.1 3975719 R 1274814 CDS YP_007382993.1 443619137 14483795 3976771..3977394 1 NC_020163.1 COG1695 Predicted transcriptional regulators; transcriptional regulator 3977394 14483795 APECO78_19160 Escherichia coli APEC O78 transcriptional regulator YP_007382993.1 3976771 D 1274814 CDS YP_007382994.1 443619138 14483796 complement(3977548..3979068) 1 NC_020163.1 COG2202 FOG: PAS/PAC domain; aerotaxis sensor receptor 3979068 14483796 APECO78_19165 Escherichia coli APEC O78 aerotaxis sensor receptor YP_007382994.1 3977548 R 1274814 CDS YP_007382995.1 443619139 14483797 3979459..3980865 1 NC_020163.1 COG4992 Ornithine/acetylornithine aminotransferase; putrescine--2-oxoglutarate aminotransferase 3980865 14483797 APECO78_19170 Escherichia coli APEC O78 putrescine--2-oxoglutarate aminotransferase YP_007382995.1 3979459 D 1274814 CDS YP_007382996.1 443619140 14483798 complement(3980907..3981239) 1 NC_020163.1 COG0073 EMAP domain; tRNA-binding protein 3981239 14483798 APECO78_19175 Escherichia coli APEC O78 tRNA-binding protein YP_007382996.1 3980907 R 1274814 CDS YP_007382997.1 443619141 14483799 3981458..3982441 1 NC_020163.1 COG1609 Transcriptional regulators; DNA-binding transcriptional repressor EbgR 3982441 14483799 APECO78_19180 Escherichia coli APEC O78 DNA-binding transcriptional repressor EbgR YP_007382997.1 3981458 D 1274814 CDS YP_007382998.1 443619142 14483800 3982625..3985717 1 NC_020163.1 COG3250 Beta-galactosidase/beta-glucuronidase; cryptic beta-D-galactosidase subunit alpha 3985717 ebgA 14483800 ebgA Escherichia coli APEC O78 cryptic beta-D-galactosidase subunit alpha YP_007382998.1 3982625 D 1274814 CDS YP_007382999.1 443619143 14483801 3985714..3986163 1 NC_020163.1 COG2731 Beta-galactosidase, beta subunit; cryptic beta-D-galactosidase subunit beta 3986163 14483801 APECO78_19190 Escherichia coli APEC O78 cryptic beta-D-galactosidase subunit beta YP_007382999.1 3985714 D 1274814 CDS YP_007383000.1 443619144 14483802 3986226..3987659 1 NC_020163.1 COG0531 Amino acid transporters; putative oxidoreductase 3987659 14483802 APECO78_19195 Escherichia coli APEC O78 putative oxidoreductase YP_007383000.1 3986226 D 1274814 CDS YP_007383001.1 443619145 14483803 3987793..3988863 1 NC_020163.1 hypothetical protein 3988863 14483803 APECO78_19200 Escherichia coli APEC O78 hypothetical protein YP_007383001.1 3987793 D 1274814 CDS YP_007383002.1 443619146 14483804 3988880..3991231 1 NC_020163.1 COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; alpha-glucosidase 3991231 14483804 APECO78_19205 Escherichia coli APEC O78 alpha-glucosidase YP_007383002.1 3988880 D 1274814 CDS YP_007383003.1 443619147 14483805 3991557..3993575 1 NC_020163.1 COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; 2,4-dienoyl-CoA reductase 3993575 fadH 14483805 fadH Escherichia coli APEC O78 2,4-dienoyl-CoA reductase YP_007383003.1 3991557 D 1274814 CDS YP_007383004.1 443619148 14483806 complement(3993620..3994036) 1 NC_020163.1 COG5499 Predicted transcription regulator containing HTH domain; DNA-binding transcriptional regulator 3994036 14483806 APECO78_19215 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007383004.1 3993620 R 1274814 CDS YP_007383005.1 443619149 14483807 complement(3994033..3994203) 1 NC_020163.1 hypothetical protein 3994203 14483807 APECO78_19220 Escherichia coli APEC O78 hypothetical protein YP_007383005.1 3994033 R 1274814 CDS YP_007383006.1 443619150 14483808 complement(3994307..3995443) 1 NC_020163.1 COG2813 16S RNA G1207 methylase RsmC; SAM-dependent 23S ribosomal RNA mG1835 methyltransferase 3995443 14483808 APECO78_19225 Escherichia coli APEC O78 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase YP_007383006.1 3994307 R 1274814 CDS YP_007383007.1 443619151 14483809 3995528..3996031 1 NC_020163.1 COG1451 Predicted metal-dependent hydrolase; hypothetical protein 3996031 14483809 APECO78_19230 Escherichia coli APEC O78 hypothetical protein YP_007383007.1 3995528 D 1274814 CDS YP_007383008.1 443619152 14483810 3996108..3996791 1 NC_020163.1 COG2949 Uncharacterized membrane protein; putative thioredoxin-like protein 3996791 14483810 APECO78_19235 Escherichia coli APEC O78 putative thioredoxin-like protein YP_007383008.1 3996108 D 1274814 CDS YP_007383009.1 443619153 14483811 3996870..3997856 1 NC_020163.1 COG0673 Predicted dehydrogenases and related proteins; NAD(P)-binding dehydrogenase 3997856 14483811 APECO78_19240 Escherichia coli APEC O78 NAD(P)-binding dehydrogenase YP_007383009.1 3996870 D 1274814 CDS YP_007383010.1 443619154 14483812 3998139..3999104 1 NC_020163.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; inner membrane protein 3999104 14483812 APECO78_19245 Escherichia coli APEC O78 inner membrane protein YP_007383010.1 3998139 D 1274814 CDS YP_007383011.1 443619155 14483813 3999505..4000749 1 NC_020163.1 COG3633 Na+/serine symporter; serine/threonine transporter SstT 4000749 14483813 APECO78_19250 Escherichia coli APEC O78 serine/threonine transporter SstT YP_007383011.1 3999505 D 1274814 CDS YP_007383012.1 443619156 14483814 complement(4000754..4001305) 1 NC_020163.1 inner membrane protein 4001305 14483814 APECO78_19255 Escherichia coli APEC O78 inner membrane protein YP_007383012.1 4000754 R 1274814 CDS YP_007383013.1 443619157 14483815 complement(4001388..4002875) 1 NC_020163.1 COG2721 Altronate dehydratase; altronate hydrolase 4002875 14483815 APECO78_19260 Escherichia coli APEC O78 altronate hydrolase YP_007383013.1 4001388 R 1274814 CDS YP_007383014.1 443619158 14483816 complement(4002890..4004302) 1 NC_020163.1 COG1904 Glucuronate isomerase; glucuronate isomerase 4004302 14483816 APECO78_19265 Escherichia coli APEC O78 glucuronate isomerase YP_007383014.1 4002890 R 1274814 CDS YP_007383015.1 443619159 14483817 4004785..4006083 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; hexuronate transporter ExuT 4006083 14483817 APECO78_19270 Escherichia coli APEC O78 hexuronate transporter ExuT YP_007383015.1 4004785 D 1274814 CDS YP_007383016.1 443619160 14483818 complement(4006171..4007259) 1 NC_020163.1 putative minor pilin and initiator protein 4007259 14483818 APECO78_19275 Escherichia coli APEC O78 putative minor pilin and initiator protein YP_007383016.1 4006171 R 1274814 CDS YP_007383017.1 443619161 14483819 complement(4007256..4008182) 1 NC_020163.1 Outer membrane fimbrial user protein 4008182 14483819 APECO78_19280 Escherichia coli APEC O78 Outer membrane fimbrial user protein YP_007383017.1 4007256 R 1274814 CDS YP_007383018.1 443619162 14483820 complement(4008157..4009062) 1 NC_020163.1 COG2801 Transposase and inactivated derivatives; IS2 transposase TnpB 4009062 14483820 APECO78_19285 Escherichia coli APEC O78 IS2 transposase TnpB YP_007383018.1 4008157 R 1274814 CDS YP_007383019.1 443619163 14483821 complement(4009020..4009385) 1 NC_020163.1 COG2963 Transposase and inactivated derivatives; IS2 repressor TnpA 4009385 14483821 APECO78_19290 Escherichia coli APEC O78 IS2 repressor TnpA YP_007383019.1 4009020 R 1274814 CDS YP_007383020.1 443619164 14483822 complement(4009474..4011276) 1 NC_020163.1 putative outer membrane usher protein 4011276 14483822 APECO78_19295 Escherichia coli APEC O78 putative outer membrane usher protein YP_007383020.1 4009474 R 1274814 CDS YP_007383021.1 443619165 14483823 complement(4011368..4011868) 1 NC_020163.1 fimbrial subunit 4011868 14483823 APECO78_19300 Escherichia coli APEC O78 fimbrial subunit YP_007383021.1 4011368 R 1274814 CDS YP_007383022.1 443619166 14483824 complement(4011898..4012614) 1 NC_020163.1 fimbrial protein 4012614 14483824 APECO78_19305 Escherichia coli APEC O78 fimbrial protein YP_007383022.1 4011898 R 1274814 CDS YP_007383023.1 443619167 14483825 4012910..4013686 1 NC_020163.1 COG2186 Transcriptional regulators; DNA-binding transcriptional repressor ExuR 4013686 14483825 APECO78_19310 Escherichia coli APEC O78 DNA-binding transcriptional repressor ExuR YP_007383023.1 4012910 D 1274814 CDS YP_007383024.1 443619168 14483826 4014031..4014693 1 NC_020163.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 4014693 14483826 APECO78_19315 Escherichia coli APEC O78 hypothetical protein YP_007383024.1 4014031 D 1274814 CDS YP_007383025.1 443619169 14483827 4014697..4015080 1 NC_020163.1 EnvZ/OmpR regulon moderator 4015080 14483827 APECO78_19320 Escherichia coli APEC O78 EnvZ/OmpR regulon moderator YP_007383025.1 4014697 D 1274814 CDS YP_007383026.1 443619170 14483828 4015227..4015595 1 NC_020163.1 hypothetical protein 4015595 14483828 APECO78_19325 Escherichia coli APEC O78 hypothetical protein YP_007383026.1 4015227 D 1274814 CDS YP_007383027.1 443619171 14483829 4015633..4015938 1 NC_020163.1 COG4575 Uncharacterized conserved protein; hypothetical protein 4015938 14483829 APECO78_19330 Escherichia coli APEC O78 hypothetical protein YP_007383027.1 4015633 D 1274814 CDS YP_007383028.1 443619172 14483830 4015941..4016345 1 NC_020163.1 hypothetical protein 4016345 14483830 APECO78_19335 Escherichia coli APEC O78 hypothetical protein YP_007383028.1 4015941 D 1274814 CDS YP_007383029.1 443619173 14483831 4016335..4016634 1 NC_020163.1 hypothetical protein 4016634 14483831 APECO78_19340 Escherichia coli APEC O78 hypothetical protein YP_007383029.1 4016335 D 1274814 CDS YP_007383030.1 443619174 14483832 4016820..4017212 1 NC_020163.1 COG2259 Predicted membrane protein; hypothetical protein 4017212 14483832 APECO78_19345 Escherichia coli APEC O78 hypothetical protein YP_007383030.1 4016820 D 1274814 CDS YP_007383031.1 443619175 14483833 4017282..4018268 1 NC_020163.1 COG0435 Predicted glutathione S-transferase; S-transferase 4018268 14483833 APECO78_19350 Escherichia coli APEC O78 S-transferase YP_007383031.1 4017282 D 1274814 CDS YP_007383032.1 443619176 14483834 4018561..4018926 1 NC_020163.1 COG3152 Predicted membrane protein; hypothetical protein 4018926 14483834 APECO78_19355 Escherichia coli APEC O78 hypothetical protein YP_007383032.1 4018561 D 1274814 CDS YP_007383033.1 443619177 14483835 4019168..4019524 1 NC_020163.1 COG3152 Predicted membrane protein; putative inner membrane protein 4019524 14483835 APECO78_19360 Escherichia coli APEC O78 putative inner membrane protein YP_007383033.1 4019168 D 1274814 CDS YP_007383034.1 443619178 14483836 complement(4019575..4020471) 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 4020471 14483836 APECO78_19365 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007383034.1 4019575 R 1274814 CDS YP_007383035.1 443619179 14483837 4020576..4021277 1 NC_020163.1 COG1741 Pirin-related protein; pirin 4021277 14483837 APECO78_19370 Escherichia coli APEC O78 pirin YP_007383035.1 4020576 D 1274814 CDS YP_007383036.1 443619180 14483838 4021300..4021464 1 NC_020163.1 hypothetical protein 4021464 14483838 APECO78_19375 Escherichia coli APEC O78 hypothetical protein YP_007383036.1 4021300 D 1274814 CDS YP_007383037.1 443619181 14483839 complement(4021454..4021615) 1 NC_020163.1 hypothetical protein 4021615 14483839 APECO78_19380 Escherichia coli APEC O78 hypothetical protein YP_007383037.1 4021454 R 1274814 CDS YP_007383038.1 443619182 14483840 complement(4021676..4022986) 1 NC_020163.1 COG3681 Uncharacterized conserved protein; hypothetical protein 4022986 14483840 APECO78_19385 Escherichia coli APEC O78 hypothetical protein YP_007383038.1 4021676 R 1274814 CDS YP_007383039.1 443619183 14483841 complement(4023014..4024345) 1 NC_020163.1 COG0814 Amino acid permeases; transporter 4024345 14483841 APECO78_19390 Escherichia coli APEC O78 transporter YP_007383039.1 4023014 R 1274814 CDS YP_007383040.1 443619184 14483842 complement(4024620..4025984) 1 NC_020163.1 COG1760 L-serine deaminase; L-serine dehydratase TdcG 4025984 14483842 APECO78_19395 Escherichia coli APEC O78 L-serine dehydratase TdcG YP_007383040.1 4024620 R 1274814 CDS YP_007383041.1 443619185 14483843 complement(4026056..4026445) 1 NC_020163.1 COG0251 Putative translation initiation inhibitor, yjgF family; endoribonuclease L-PSP 4026445 14483843 APECO78_19400 Escherichia coli APEC O78 endoribonuclease L-PSP YP_007383041.1 4026056 R 1274814 CDS YP_007383042.1 443619186 14483844 complement(4026459..4028753) 1 NC_020163.1 COG1882 Pyruvate-formate lyase; Keto-acid formate acetyltransferase 4028753 14483844 APECO78_19405 Escherichia coli APEC O78 Keto-acid formate acetyltransferase YP_007383042.1 4026459 R 1274814 CDS YP_007383043.1 443619187 14483845 complement(4028787..4029995) 1 NC_020163.1 COG0282 Acetate kinase; propionate/acetate kinase 4029995 14483845 APECO78_19410 Escherichia coli APEC O78 propionate/acetate kinase YP_007383043.1 4028787 R 1274814 CDS YP_007383044.1 443619188 14483846 complement(4030021..4031352) 1 NC_020163.1 COG0814 Amino acid permeases; threonine/serine transporter TdcC 4031352 14483846 APECO78_19415 Escherichia coli APEC O78 threonine/serine transporter TdcC YP_007383044.1 4030021 R 1274814 CDS YP_007383045.1 443619189 14483847 complement(4031374..4032363) 1 NC_020163.1 COG1171 Threonine dehydratase; threonine dehydratase 4032363 14483847 APECO78_19420 Escherichia coli APEC O78 threonine dehydratase YP_007383045.1 4031374 R 1274814 CDS YP_007383046.1 443619190 14483848 complement(4032462..4033400) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional activator TdcA 4033400 14483848 APECO78_19425 Escherichia coli APEC O78 DNA-binding transcriptional activator TdcA YP_007383046.1 4032462 R 1274814 CDS YP_007383047.1 443619191 14483849 4033577..4033933 1 NC_020163.1 DNA-binding transcriptional activator TdcR 4033933 14483849 APECO78_19430 Escherichia coli APEC O78 DNA-binding transcriptional activator TdcR YP_007383047.1 4033577 D 1274814 CDS YP_007383048.1 443619192 14483850 4034189..4034728 1 NC_020163.1 COG0443 Molecular chaperone; hypothetical protein 4034728 14483850 APECO78_19435 Escherichia coli APEC O78 hypothetical protein YP_007383048.1 4034189 D 1274814 CDS YP_007383049.1 443619193 14483851 4034750..4035937 1 NC_020163.1 hypothetical protein 4035937 14483851 APECO78_19440 Escherichia coli APEC O78 hypothetical protein YP_007383049.1 4034750 D 1274814 CDS YP_007383050.1 443619194 14483852 complement(4036139..4036267) 1 NC_020163.1 hypothetical protein 4036267 14483852 APECO78_19445 Escherichia coli APEC O78 hypothetical protein YP_007383050.1 4036139 R 1274814 CDS YP_007383051.1 443619195 14483853 complement(4036264..4036380) 1 NC_020163.1 hypothetical protein 4036380 14483853 APECO78_19450 Escherichia coli APEC O78 hypothetical protein YP_007383051.1 4036264 R 1274814 CDS YP_007383052.1 443619196 14483854 complement(4036847..4037992) 1 NC_020163.1 COG1929 Glycerate kinase; glycerate kinase I 4037992 14483854 APECO78_19455 Escherichia coli APEC O78 glycerate kinase I YP_007383052.1 4036847 R 1274814 CDS YP_007383053.1 443619197 14483855 complement(4038089..4038979) 1 NC_020163.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; tartronate semialdehyde reductase 4038979 14483855 APECO78_19460 Escherichia coli APEC O78 tartronate semialdehyde reductase YP_007383053.1 4038089 R 1274814 CDS YP_007383054.1 443619198 14483856 complement(4039009..4039779) 1 NC_020163.1 COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; alpha-dehydro-beta-deoxy-D-glucarate aldolase 4039779 14483856 APECO78_19465 Escherichia coli APEC O78 alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_007383054.1 4039009 R 1274814 CDS YP_007383055.1 443619199 14483857 complement(4039795..4041129) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative transport protein 4041129 14483857 APECO78_19470 Escherichia coli APEC O78 putative transport protein YP_007383055.1 4039795 R 1274814 CDS YP_007383056.1 443619200 14483858 4041504..4043075 1 NC_020163.1 COG2721 Altronate dehydratase; galactarate dehydratase 4043075 14483858 APECO78_19475 Escherichia coli APEC O78 galactarate dehydratase YP_007383056.1 4041504 D 1274814 CDS YP_007383057.1 443619201 14483859 4043224..4043559 1 NC_020163.1 COG2002 Regulators of stationary/sporulation gene expression; regulator PrlF 4043559 14483859 APECO78_19480 Escherichia coli APEC O78 regulator PrlF YP_007383057.1 4043224 D 1274814 CDS YP_007383058.1 443619202 14483860 4043559..4044023 1 NC_020163.1 hypothetical protein 4044023 14483860 APECO78_19485 Escherichia coli APEC O78 hypothetical protein YP_007383058.1 4043559 D 1274814 CDS YP_007383059.1 443619203 14483861 complement(4044078..4044887) 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional regulator AgaR 4044887 14483861 APECO78_19490 Escherichia coli APEC O78 DNA-binding transcriptional regulator AgaR YP_007383059.1 4044078 R 1274814 CDS YP_007383060.1 443619204 14483862 4045136..4046416 1 NC_020163.1 COG4573 Predicted tagatose 6-phosphate kinase; tagatose 6-phosphate aldolase 1, kbaZ subunit 4046416 14483862 APECO78_19495 Escherichia coli APEC O78 tagatose 6-phosphate aldolase 1, kbaZ subunit YP_007383060.1 4045136 D 1274814 CDS YP_007383061.1 443619205 14483863 4046439..4046912 1 NC_020163.1 COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; N-acetylgalactosamine-specific PTS system 4046912 14483863 APECO78_19500 Escherichia coli APEC O78 N-acetylgalactosamine-specific PTS system YP_007383061.1 4046439 D 1274814 CDS YP_007383062.1 443619206 14483864 4046923..4047702 1 NC_020163.1 COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system N-acetylgalactosamine-specific transporter subunit IIC 4047702 14483864 APECO78_19505 Escherichia coli APEC O78 PTS system N-acetylgalactosamine-specific transporter subunit IIC YP_007383062.1 4046923 D 1274814 CDS YP_007383063.1 443619207 14483865 4047692..4048570 1 NC_020163.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system N-acetylgalactosamine-specific transporter subunit IID 4048570 14483865 APECO78_19510 Escherichia coli APEC O78 PTS system N-acetylgalactosamine-specific transporter subunit IID YP_007383063.1 4047692 D 1274814 CDS YP_007383064.1 443619208 14483866 4048588..4049022 1 NC_020163.1 COG2893 Phosphotransferase system, mannose/fructose-specific component IIA; PTS system transporter subunit IIA 4049022 14483866 APECO78_19515 Escherichia coli APEC O78 PTS system transporter subunit IIA YP_007383064.1 4048588 D 1274814 CDS YP_007383065.1 443619209 14483867 4049019..4050152 1 NC_020163.1 COG1820 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 4050152 14483867 APECO78_19520 Escherichia coli APEC O78 N-acetylglucosamine-6-phosphate deacetylase YP_007383065.1 4049019 D 1274814 CDS YP_007383066.1 443619210 14483868 4050503..4051657 1 NC_020163.1 COG2222 Predicted phosphosugar isomerases; tagatose-6-phosphate ketose/aldose isomerase 4051657 agaS 14483868 agaS Escherichia coli APEC O78 tagatose-6-phosphate ketose/aldose isomerase YP_007383066.1 4050503 D 1274814 CDS YP_007383067.1 443619211 14483869 4051670..4052530 1 NC_020163.1 COG0191 Fructose/tagatose bisphosphate aldolase; tagatose-bisphosphate aldolase 4052530 14483869 APECO78_19530 Escherichia coli APEC O78 tagatose-bisphosphate aldolase YP_007383067.1 4051670 D 1274814 CDS YP_007383068.1 443619212 14483870 4052697..4053173 1 NC_020163.1 COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system N-acetylgalactosamine-specific transporter subunit IIB 4053173 14483870 APECO78_19535 Escherichia coli APEC O78 PTS system N-acetylgalactosamine-specific transporter subunit IIB YP_007383068.1 4052697 D 1274814 CDS YP_007383069.1 443619213 14483871 4053212..4054015 1 NC_020163.1 COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system N-acetylgalactosamine-specific transporter subunit IIC 4054015 14483871 APECO78_19540 Escherichia coli APEC O78 PTS system N-acetylgalactosamine-specific transporter subunit IIC YP_007383069.1 4053212 D 1274814 CDS YP_007383070.1 443619214 14483872 4054005..4054796 1 NC_020163.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; N-acetylgalactosamine-specific PTS system 4054796 14483872 APECO78_19545 Escherichia coli APEC O78 N-acetylgalactosamine-specific PTS system YP_007383070.1 4054005 D 1274814 CDS YP_007383071.1 443619215 14483873 4054797..4055552 1 NC_020163.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; galactosamine-6-phosphate isomerase 4055552 14483873 APECO78_19550 Escherichia coli APEC O78 galactosamine-6-phosphate isomerase YP_007383071.1 4054797 D 1274814 CDS YP_007383072.1 443619216 14483874 4055953..4056537 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; putative fimbrial-like protein 4056537 14483874 APECO78_19555 Escherichia coli APEC O78 putative fimbrial-like protein YP_007383072.1 4055953 D 1274814 CDS YP_007383073.1 443619217 14483875 4056617..4057312 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; periplasmic pilin chaperone 4057312 14483875 APECO78_19560 Escherichia coli APEC O78 periplasmic pilin chaperone YP_007383073.1 4056617 D 1274814 CDS YP_007383074.1 443619218 14483876 4057342..4059858 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; Fimbrial usher family protein 4059858 14483876 APECO78_19565 Escherichia coli APEC O78 Fimbrial usher family protein YP_007383074.1 4057342 D 1274814 CDS YP_007383075.1 443619219 14483877 4059869..4060960 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein 4060960 14483877 APECO78_19570 Escherichia coli APEC O78 fimbrial protein YP_007383075.1 4059869 D 1274814 CDS YP_007383076.1 443619220 14483878 complement(4061003..4061863) 1 NC_020163.1 COG0313 Predicted methyltransferases; SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase 4061863 14483878 APECO78_19575 Escherichia coli APEC O78 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase YP_007383076.1 4061003 R 1274814 CDS YP_007383077.1 443619221 14483879 4061928..4063964 1 NC_020163.1 COG3107 Putative lipoprotein; LppC family lipoprotein 4063964 14483879 APECO78_19580 Escherichia coli APEC O78 LppC family lipoprotein YP_007383077.1 4061928 D 1274814 CDS YP_007383078.1 443619222 14483880 4063922..4064317 1 NC_020163.1 COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 4064317 14483880 APECO78_19585 Escherichia coli APEC O78 hypothetical protein YP_007383078.1 4063922 D 1274814 CDS YP_007383079.1 443619223 14483881 4064337..4064927 1 NC_020163.1 COG0279 Phosphoheptose isomerase; DnaA initiator-associating protein DiaA 4064927 14483881 APECO78_19590 Escherichia coli APEC O78 DnaA initiator-associating protein DiaA YP_007383079.1 4064337 D 1274814 CDS YP_007383080.1 443619224 14483882 4064937..4065512 1 NC_020163.1 COG2823 Predicted periplasmic or secreted lipoprotein; outer membrane lipoprotein 4065512 14483882 APECO78_19595 Escherichia coli APEC O78 outer membrane lipoprotein YP_007383080.1 4064937 D 1274814 CDS YP_007383081.1 443619225 14483883 complement(4065717..4066757) 1 NC_020163.1 COG0701 Predicted permeases; putative permease 4066757 14483883 APECO78_19600 Escherichia coli APEC O78 putative permease YP_007383081.1 4065717 R 1274814 CDS YP_007383082.1 443619226 14483884 complement(4066830..4067465) 1 NC_020163.1 COG0702 Predicted nucleoside-diphosphate-sugar epimerases; nucleoside-diphosphate-sugar epimerase 4067465 14483884 APECO78_19605 Escherichia coli APEC O78 nucleoside-diphosphate-sugar epimerase YP_007383082.1 4066830 R 1274814 CDS YP_007383083.1 443619227 14483885 4067593..4068111 1 NC_020163.1 COG0693 Putative intracellular protease/amidase; hypothetical protein 4068111 14483885 APECO78_19610 Escherichia coli APEC O78 hypothetical protein YP_007383083.1 4067593 D 1274814 CDS YP_007383084.1 443619228 14483886 complement(4068091..4068534) 1 NC_020163.1 COG3787 Uncharacterized protein conserved in bacteria; hypothetical protein 4068534 14483886 APECO78_19615 Escherichia coli APEC O78 hypothetical protein YP_007383084.1 4068091 R 1274814 CDS YP_007383085.1 443619229 14483887 4068585..4068887 1 NC_020163.1 COG2827 Predicted endonuclease containing a URI domain; endonuclease 4068887 14483887 APECO78_19620 Escherichia coli APEC O78 endonuclease YP_007383085.1 4068585 D 1274814 CDS YP_007383086.1 443619230 14483888 complement(4068874..4069377) 1 NC_020163.1 COG3153 Predicted acetyltransferase; hypothetical protein 4069377 14483888 APECO78_19625 Escherichia coli APEC O78 hypothetical protein YP_007383086.1 4068874 R 1274814 CDS YP_007383087.1 443619231 14483889 complement(4069371..4069895) 1 NC_020163.1 COG3154 Putative lipid carrier protein; hypothetical protein 4069895 14483889 APECO78_19630 Escherichia coli APEC O78 hypothetical protein YP_007383087.1 4069371 R 1274814 CDS YP_007383088.1 443619232 14483890 4070104..4071099 1 NC_020163.1 COG0826 Collagenase and related proteases; peptidase, U32 family protein 4071099 14483890 APECO78_19635 Escherichia coli APEC O78 peptidase, U32 family protein YP_007383088.1 4070104 D 1274814 CDS YP_007383089.1 443619233 14483891 4071108..4071986 1 NC_020163.1 COG0826 Collagenase and related proteases; hypothetical protein 4071986 14483891 APECO78_19640 Escherichia coli APEC O78 hypothetical protein YP_007383089.1 4071108 D 1274814 CDS YP_007383090.1 443619234 14483892 4072192..4073199 1 NC_020163.1 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; hypothetical protein 4073199 14483892 APECO78_19645 Escherichia coli APEC O78 hypothetical protein YP_007383090.1 4072192 D 1274814 CDS YP_007383091.1 443619235 14483893 complement(4073317..4074561) 1 NC_020163.1 COG0814 Amino acid permeases; tryptophan permease 4074561 14483893 APECO78_19650 Escherichia coli APEC O78 tryptophan permease YP_007383091.1 4073317 R 1274814 CDS YP_007383092.1 443619236 14483894 complement(4074715..4076604) 1 NC_020163.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase DeaD 4076604 14483894 APECO78_19655 Escherichia coli APEC O78 ATP-dependent RNA helicase DeaD YP_007383092.1 4074715 R 1274814 CDS YP_007383093.1 443619237 14483895 complement(4076784..4077668) 1 NC_020163.1 COG4785 Lipoprotein NlpI, contains TPR repeats; lipoprotein NlpI 4077668 14483895 APECO78_19660 Escherichia coli APEC O78 lipoprotein NlpI YP_007383093.1 4076784 R 1274814 CDS YP_007383094.1 443619238 14483896 complement(4077777..4079912) 1 NC_020163.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 4079912 14483896 APECO78_19665 Escherichia coli APEC O78 polynucleotide phosphorylase/polyadenylase YP_007383094.1 4077777 R 1274814 CDS YP_007383095.1 443619239 14483897 complement(4080159..4080428) 1 NC_020163.1 COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 4080428 14483897 APECO78_19670 Escherichia coli APEC O78 30S ribosomal protein S15 YP_007383095.1 4080159 R 1274814 CDS YP_007383096.1 443619240 14483898 complement(4080577..4081521) 1 NC_020163.1 COG0130 Pseudouridine synthase; tRNA pseudouridine synthase B 4081521 14483898 APECO78_19675 Escherichia coli APEC O78 tRNA pseudouridine synthase B YP_007383096.1 4080577 R 1274814 CDS YP_007383097.1 443619241 14483899 complement(4081521..4081922) 1 NC_020163.1 COG0858 Ribosome-binding factor A; ribosome-binding factor A 4081922 14483899 APECO78_19680 Escherichia coli APEC O78 ribosome-binding factor A YP_007383097.1 4081521 R 1274814 CDS YP_007383098.1 443619242 14483900 complement(4082086..4084758) 1 NC_020163.1 COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 4084758 14483900 APECO78_19685 Escherichia coli APEC O78 translation initiation factor IF-2 YP_007383098.1 4082086 R 1274814 CDS YP_007383099.1 443619243 14483901 complement(4084783..4086270) 1 NC_020163.1 COG0195 Transcription elongation factor; transcription elongation factor NusA 4086270 14483901 APECO78_19690 Escherichia coli APEC O78 transcription elongation factor NusA YP_007383099.1 4084783 R 1274814 CDS YP_007383100.1 443619244 14483902 complement(4086298..4086750) 1 NC_020163.1 COG0779 Uncharacterized protein conserved in bacteria; hypothetical protein 4086750 14483902 APECO78_19695 Escherichia coli APEC O78 hypothetical protein YP_007383100.1 4086298 R 1274814 CDS YP_007383101.1 443619245 14484651 4087381..4088724 1 NC_020163.1 COG0137 Argininosuccinate synthase; argininosuccinate synthase 4088724 14484651 APECO78_19700 Escherichia coli APEC O78 argininosuccinate synthase YP_007383101.1 4087381 D 1274814 CDS YP_007383102.1 443619246 14483904 complement(4088732..4090357) 1 NC_020163.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; hydrolase, inner membrane 4090357 14483904 APECO78_19705 Escherichia coli APEC O78 hydrolase, inner membrane YP_007383102.1 4088732 R 1274814 CDS YP_007383103.1 443619247 14484652 complement(4090917..4091249) 1 NC_020163.1 COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG 4091249 14484652 APECO78_19710 Escherichia coli APEC O78 preprotein translocase subunit SecG YP_007383103.1 4090917 R 1274814 CDS YP_007383104.1 443619248 14483906 4091420..4091563 1 NC_020163.1 hypothetical protein 4091563 14483906 APECO78_19715 Escherichia coli APEC O78 hypothetical protein YP_007383104.1 4091420 D 1274814 CDS YP_007383105.1 443619249 14483907 complement(4091477..4092814) 1 NC_020163.1 COG1109 Phosphomannomutase; phosphoglucosamine mutase 4092814 14483907 APECO78_19720 Escherichia coli APEC O78 phosphoglucosamine mutase YP_007383105.1 4091477 R 1274814 CDS YP_007383106.1 443619250 14483908 complement(4092807..4093655) 1 NC_020163.1 COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 4093655 14483908 APECO78_19725 Escherichia coli APEC O78 dihydropteroate synthase YP_007383106.1 4092807 R 1274814 CDS YP_007383107.1 443619251 14483909 complement(4093745..4095679) 1 NC_020163.1 COG0465 ATP-dependent Zn proteases; ATP-dependent metalloprotease 4095679 hflB 14483909 hflB Escherichia coli APEC O78 ATP-dependent metalloprotease YP_007383107.1 4093745 R 1274814 CDS YP_007383108.1 443619252 14483910 complement(4095779..4096408) 1 NC_020163.1 COG0293 23S rRNA methylase; 23S rRNA methyltransferase J 4096408 14483910 APECO78_19735 Escherichia coli APEC O78 23S rRNA methyltransferase J YP_007383108.1 4095779 R 1274814 CDS YP_007383109.1 443619253 14483911 4096534..4096827 1 NC_020163.1 COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; RNA-binding protein YhbY 4096827 14483911 APECO78_19740 Escherichia coli APEC O78 RNA-binding protein YhbY YP_007383109.1 4096534 D 1274814 CDS YP_007383110.1 443619254 14483912 complement(4096983..4097459) 1 NC_020163.1 COG0782 Transcription elongation factor; transcription elongation factor GreA 4097459 14483912 APECO78_19745 Escherichia coli APEC O78 transcription elongation factor GreA YP_007383110.1 4096983 R 1274814 CDS YP_007383111.1 443619255 14483913 4097707..4099140 1 NC_020163.1 COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); D-alanyl-D-alanine carboxypeptidase 4099140 14483913 APECO78_19750 Escherichia coli APEC O78 D-alanyl-D-alanine carboxypeptidase YP_007383111.1 4097707 D 1274814 CDS YP_007383112.1 443619256 14483914 complement(4099326..4100498) 1 NC_020163.1 COG0536 Predicted GTPase; GTPase CgtA 4100498 14483914 APECO78_19755 Escherichia coli APEC O78 GTPase CgtA YP_007383112.1 4099326 R 1274814 CDS YP_007383113.1 443619257 14483915 complement(4100514..4101479) 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 4101479 14483915 APECO78_19760 Escherichia coli APEC O78 hypothetical protein YP_007383113.1 4100514 R 1274814 CDS YP_007383114.1 443619258 14483916 complement(4101606..4101863) 1 NC_020163.1 COG0211 Ribosomal protein L27; 50S ribosomal protein L27 4101863 14483916 APECO78_19765 Escherichia coli APEC O78 50S ribosomal protein L27 YP_007383114.1 4101606 R 1274814 CDS YP_007383115.1 443619259 14483917 complement(4101884..4102195) 1 NC_020163.1 COG0261 Ribosomal protein L21; 50S ribosomal protein L21 4102195 14483917 APECO78_19770 Escherichia coli APEC O78 50S ribosomal protein L21 YP_007383115.1 4101884 R 1274814 CDS YP_007383116.1 443619260 14483918 4102454..4103425 1 NC_020163.1 COG0142 Geranylgeranyl pyrophosphate synthase; octaprenyl diphosphate synthase 4103425 14483918 APECO78_19775 Escherichia coli APEC O78 octaprenyl diphosphate synthase YP_007383116.1 4102454 D 1274814 CDS YP_007383117.1 443619261 14483919 4103652..4103930 1 NC_020163.1 COG3423 Predicted transcriptional regulator; DNA-binding transcriptional regulator Nlp 4103930 14483919 APECO78_19780 Escherichia coli APEC O78 DNA-binding transcriptional regulator Nlp YP_007383117.1 4103652 D 1274814 CDS YP_007383118.1 443619262 14483920 complement(4103978..4105237) 1 NC_020163.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4105237 14483920 APECO78_19785 Escherichia coli APEC O78 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_007383118.1 4103978 R 1274814 CDS YP_007383119.1 443619263 14483921 complement(4105292..4105546) 1 NC_020163.1 COG5007 Predicted transcriptional regulator, BolA superfamily; DNA-binding transcriptional regulator 4105546 14483921 APECO78_19790 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007383119.1 4105292 R 1274814 CDS YP_007383120.1 443619264 14483922 complement(4105706..4105999) 1 NC_020163.1 COG3113 Predicted NTP binding protein (contains STAS domain); putative NTP binding protein (contains STAS domain) 4105999 14483922 APECO78_19795 Escherichia coli APEC O78 putative NTP binding protein (contains STAS domain) YP_007383120.1 4105706 R 1274814 CDS YP_007383121.1 443619265 14483923 complement(4105999..4106634) 1 NC_020163.1 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component; ABC transporter substrate-binding protein MlaC 4106634 14483923 APECO78_19800 Escherichia coli APEC O78 ABC transporter substrate-binding protein MlaC YP_007383121.1 4105999 R 1274814 CDS YP_007383122.1 443619266 14483924 complement(4106653..4107204) 1 NC_020163.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; hypothetical protein 4107204 14483924 APECO78_19805 Escherichia coli APEC O78 hypothetical protein YP_007383122.1 4106653 R 1274814 CDS YP_007383123.1 443619267 14483925 complement(4107209..4107991) 1 NC_020163.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; toluene ABC transporter permease 4107991 14483925 APECO78_19810 Escherichia coli APEC O78 toluene ABC transporter permease YP_007383123.1 4107209 R 1274814 CDS YP_007383124.1 443619268 14483926 complement(4107999..4108808) 1 NC_020163.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ABC transporter ATP-binding protein 4108808 14483926 APECO78_19815 Escherichia coli APEC O78 ABC transporter ATP-binding protein YP_007383124.1 4107999 R 1274814 CDS YP_007383125.1 443619269 14483927 4109018..4109995 1 NC_020163.1 COG0530 Ca2+/Na+ antiporter; calcium/sodium:proton antiporter 4109995 14483927 APECO78_19820 Escherichia coli APEC O78 calcium/sodium:proton antiporter YP_007383125.1 4109018 D 1274814 CDS YP_007383126.1 443619270 14483928 4110009..4110995 1 NC_020163.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation; D-arabinose 5-phosphate isomerase 4110995 14483928 APECO78_19825 Escherichia coli APEC O78 D-arabinose 5-phosphate isomerase YP_007383126.1 4110009 D 1274814 CDS YP_007383127.1 443619271 14483929 4111016..4111582 1 NC_020163.1 COG1778 Low specificity phosphatase (HAD superfamily); 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4111582 14483929 APECO78_19830 Escherichia coli APEC O78 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_007383127.1 4111016 D 1274814 CDS YP_007383128.1 443619272 14483930 4111579..4112154 1 NC_020163.1 COG3117 Uncharacterized protein conserved in bacteria; lipopolysaccharide exporter periplasmic protein 4112154 14483930 APECO78_19835 Escherichia coli APEC O78 lipopolysaccharide exporter periplasmic protein YP_007383128.1 4111579 D 1274814 CDS YP_007383129.1 443619273 14483931 4112123..4112680 1 NC_020163.1 COG1934 Uncharacterized protein conserved in bacteria; lipopolysaccharide transport periplasmic protein LptA 4112680 14483931 APECO78_19840 Escherichia coli APEC O78 lipopolysaccharide transport periplasmic protein LptA YP_007383129.1 4112123 D 1274814 CDS YP_007383130.1 443619274 14483932 4112687..4113412 1 NC_020163.1 COG1137 ABC-type (unclassified) transport system, ATPase component; lipopolysaccharide ABC transporter ATP-binding protein 4113412 14483932 APECO78_19845 Escherichia coli APEC O78 lipopolysaccharide ABC transporter ATP-binding protein YP_007383130.1 4112687 D 1274814 CDS YP_007383131.1 443619275 14483933 4113460..4114893 1 NC_020163.1 COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 4114893 14483933 APECO78_19850 Escherichia coli APEC O78 RNA polymerase factor sigma-54 YP_007383131.1 4113460 D 1274814 CDS YP_007383132.1 443619276 14483934 4114916..4115203 1 NC_020163.1 COG1544 Ribosome-associated protein Y (PSrp-1); ribosome hibernation promoting factor HPF 4115203 14483934 APECO78_19855 Escherichia coli APEC O78 ribosome hibernation promoting factor HPF YP_007383132.1 4114916 D 1274814 CDS YP_007383133.1 443619277 14483935 4115321..4115812 1 NC_020163.1 COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); PTS system sugar transporter subunit IIA 4115812 14483935 APECO78_19860 Escherichia coli APEC O78 PTS system sugar transporter subunit IIA YP_007383133.1 4115321 D 1274814 CDS YP_007383134.1 443619278 14483936 4115858..4116712 1 NC_020163.1 COG1660 Predicted P-loop-containing kinase; glmZ(sRNA)-inactivating NTPase 4116712 14483936 APECO78_19865 Escherichia coli APEC O78 glmZ(sRNA)-inactivating NTPase YP_007383134.1 4115858 D 1274814 CDS YP_007383135.1 443619279 14483937 4116709..4116981 1 NC_020163.1 COG1925 Phosphotransferase system, HPr-related proteins; PTS system phosphohistidinoprotein-hexose phosphotransferase Npr 4116981 14483937 APECO78_19870 Escherichia coli APEC O78 PTS system phosphohistidinoprotein-hexose phosphotransferase Npr YP_007383135.1 4116709 D 1274814 CDS YP_007383136.1 443619280 14483938 4117195..4117827 1 NC_020163.1 hypothetical protein 4117827 14483938 APECO78_19875 Escherichia coli APEC O78 hypothetical protein YP_007383136.1 4117195 D 1274814 CDS YP_007383137.1 443619281 14483939 complement(4117824..4118552) 1 NC_020163.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein); monofunctional biosynthetic peptidoglycan transglycosylase 4118552 14483939 APECO78_19880 Escherichia coli APEC O78 monofunctional biosynthetic peptidoglycan transglycosylase YP_007383137.1 4117824 R 1274814 CDS YP_007383138.1 443619282 14483940 complement(4118549..4119202) 1 NC_020163.1 COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis; isoprenoid biosynthesis protein 4119202 14483940 APECO78_19885 Escherichia coli APEC O78 isoprenoid biosynthesis protein YP_007383138.1 4118549 R 1274814 CDS YP_007383139.1 443619283 14483941 complement(4119432..4121768) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; aerobic respiration control sensor protein ArcB 4121768 14483941 APECO78_19890 Escherichia coli APEC O78 aerobic respiration control sensor protein ArcB YP_007383139.1 4119432 R 1274814 CDS YP_007383140.1 443619284 14483942 complement(4121864..4122793) 1 NC_020163.1 COG1242 Predicted Fe-S oxidoreductase; Fe-S oxidoreductase 4122793 14483942 APECO78_19895 Escherichia coli APEC O78 Fe-S oxidoreductase YP_007383140.1 4121864 R 1274814 CDS YP_007383141.1 443619285 14483943 complement(4122839..4122943) 1 NC_020163.1 hypothetical protein 4122943 14483943 APECO78_19900 Escherichia coli APEC O78 hypothetical protein YP_007383141.1 4122839 R 1274814 CDS YP_007383142.1 443619286 14483944 4123468..4127928 1 NC_020163.1 COG0067 Glutamate synthase domain 1; glutamate synthase subunit alpha 4127928 gltB 14483944 gltB Escherichia coli APEC O78 glutamate synthase subunit alpha YP_007383142.1 4123468 D 1274814 CDS YP_007383143.1 443619287 14483945 4127941..4129359 1 NC_020163.1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; glutamate synthase subunit beta 4129359 gltD 14483945 gltD Escherichia coli APEC O78 glutamate synthase subunit beta YP_007383143.1 4127941 D 1274814 CDS YP_007383144.1 443619288 14483946 4129543..4130670 1 NC_020163.1 COG4804 Uncharacterized conserved protein; hypothetical protein 4130670 14483946 APECO78_19915 Escherichia coli APEC O78 hypothetical protein YP_007383144.1 4129543 D 1274814 CDS YP_007383145.1 443619289 14483947 complement(4130730..4131194) 1 NC_020163.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 4131194 14483947 APECO78_19920 Escherichia coli APEC O78 hypothetical protein YP_007383145.1 4130730 R 1274814 CDS YP_007383146.1 443619290 14483948 complement(4131191..4132066) 1 NC_020163.1 COG1940 Transcriptional regulator/sugar kinase; N-acetylmannosamine kinase 4132066 14483948 APECO78_19925 Escherichia coli APEC O78 N-acetylmannosamine kinase YP_007383146.1 4131191 R 1274814 CDS YP_007383147.1 443619291 14483949 complement(4132063..4132752) 1 NC_020163.1 COG3010 Putative N-acetylmannosamine-6-phosphate epimerase; N-acetylmannosamine-6-phosphate 2-epimerase 4132752 14483949 APECO78_19930 Escherichia coli APEC O78 N-acetylmannosamine-6-phosphate 2-epimerase YP_007383147.1 4132063 R 1274814 CDS YP_007383148.1 443619292 14483950 complement(4132800..4134290) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; sialic acid transporter 4134290 14483950 APECO78_19935 Escherichia coli APEC O78 sialic acid transporter YP_007383148.1 4132800 R 1274814 CDS YP_007383149.1 443619293 14483951 complement(4134399..4135292) 1 NC_020163.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; N-acetylneuraminate lyase 4135292 14483951 APECO78_19940 Escherichia coli APEC O78 N-acetylneuraminate lyase YP_007383149.1 4134399 R 1274814 CDS YP_007383150.1 443619294 14483952 complement(4135414..4136205) 1 NC_020163.1 COG2186 Transcriptional regulators; transcriptional regulator NanR 4136205 14483952 APECO78_19945 Escherichia coli APEC O78 transcriptional regulator NanR YP_007383150.1 4135414 R 1274814 CDS YP_007383151.1 443619295 14483953 4136585..4137952 1 NC_020163.1 COG3069 C4-dicarboxylate transporter; cryptic C4-dicarboxylate transporter DcuD 4137952 14483953 APECO78_19950 Escherichia coli APEC O78 cryptic C4-dicarboxylate transporter DcuD YP_007383151.1 4136585 D 1274814 CDS YP_007383152.1 443619296 14483954 complement(4137995..4138492) 1 NC_020163.1 COG2969 Stringent starvation protein B; ClpXP protease specificity-enhancing factor 4138492 14483954 APECO78_19955 Escherichia coli APEC O78 ClpXP protease specificity-enhancing factor YP_007383152.1 4137995 R 1274814 CDS YP_007383153.1 443619297 14483955 complement(4138498..4139136) 1 NC_020163.1 COG0625 Glutathione S-transferase; stringent starvation protein A 4139136 14483955 APECO78_19960 Escherichia coli APEC O78 stringent starvation protein A YP_007383153.1 4138498 R 1274814 CDS YP_007383154.1 443619298 14483956 complement(4139531..4139923) 1 NC_020163.1 COG0103 Ribosomal protein S9; 30S ribosomal protein S9 4139923 14483956 APECO78_19965 Escherichia coli APEC O78 30S ribosomal protein S9 YP_007383154.1 4139531 R 1274814 CDS YP_007383155.1 443619299 14483957 complement(4139939..4140367) 1 NC_020163.1 COG0102 Ribosomal protein L13; 50S ribosomal protein L13 4140367 14483957 APECO78_19970 Escherichia coli APEC O78 50S ribosomal protein L13 YP_007383155.1 4139939 R 1274814 CDS YP_007383156.1 443619300 14483958 complement(4140586..4141713) 1 NC_020163.1 COG1485 Predicted ATPase; hypothetical protein 4141713 14483958 APECO78_19975 Escherichia coli APEC O78 hypothetical protein YP_007383156.1 4140586 R 1274814 CDS YP_007383157.1 443619301 14483959 4141907..4142305 1 NC_020163.1 COG3105 Uncharacterized protein conserved in bacteria; hypothetical protein 4142305 14483959 APECO78_19980 Escherichia coli APEC O78 hypothetical protein YP_007383157.1 4141907 D 1274814 CDS YP_007383158.1 443619302 14483960 4142459..4143826 1 NC_020163.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 4143826 14483960 APECO78_19985 Escherichia coli APEC O78 serine endoprotease YP_007383158.1 4142459 D 1274814 CDS YP_007383159.1 443619303 14483961 4143916..4144983 1 NC_020163.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine endoprotease 4144983 14483961 APECO78_19990 Escherichia coli APEC O78 serine endoprotease YP_007383159.1 4143916 D 1274814 CDS YP_007383160.1 443619304 14483962 complement(4145045..4145983) 1 NC_020163.1 COG0039 Malate/lactate dehydrogenases; malate dehydrogenase 4145983 14483962 APECO78_19995 Escherichia coli APEC O78 malate dehydrogenase YP_007383160.1 4145045 R 1274814 CDS YP_007383161.1 443619305 14483963 4146418..4146888 1 NC_020163.1 COG1438 Arginine repressor; arginine repressor 4146888 14483963 APECO78_20000 Escherichia coli APEC O78 arginine repressor YP_007383161.1 4146418 D 1274814 CDS YP_007383162.1 443619306 14483964 4147253..4147516 1 NC_020163.1 hypothetical protein 4147516 14483964 APECO78_20005 Escherichia coli APEC O78 hypothetical protein YP_007383162.1 4147253 D 1274814 CDS YP_007383163.1 443619307 14483965 complement(4147572..4147844) 1 NC_020163.1 COG2732 Barstar, RNAse (barnase) inhibitor; hypothetical protein 4147844 14483965 APECO78_20010 Escherichia coli APEC O78 hypothetical protein YP_007383163.1 4147572 R 1274814 CDS YP_007383164.1 443619308 14483966 complement(4147936..4149903) 1 NC_020163.1 COG1289 Predicted membrane protein; p-hydroxybenzoic acid efflux subunit AaeB 4149903 14483966 APECO78_20015 Escherichia coli APEC O78 p-hydroxybenzoic acid efflux subunit AaeB YP_007383164.1 4147936 R 1274814 CDS YP_007383165.1 443619309 14483967 complement(4149909..4150841) 1 NC_020163.1 COG1566 Multidrug resistance efflux pump; p-hydroxybenzoic acid efflux subunit AaeA 4150841 14483967 APECO78_20020 Escherichia coli APEC O78 p-hydroxybenzoic acid efflux subunit AaeA YP_007383165.1 4149909 R 1274814 CDS YP_007383166.1 443619310 14483968 complement(4150849..4151052) 1 NC_020163.1 hypothetical protein 4151052 14483968 APECO78_20025 Escherichia coli APEC O78 hypothetical protein YP_007383166.1 4150849 R 1274814 CDS YP_007383167.1 443619311 14483969 4151235..4152164 1 NC_020163.1 COG0583 Transcriptional regulator; transcriptional regulator 4152164 14483969 APECO78_20030 Escherichia coli APEC O78 transcriptional regulator YP_007383167.1 4151235 D 1274814 CDS YP_007383168.1 443619312 14483970 complement(4152292..4153737) 1 NC_020163.1 COG0312 Predicted Zn-dependent proteases and their inactivated homologs; protease TldD 4153737 14483970 APECO78_20035 Escherichia coli APEC O78 protease TldD YP_007383168.1 4152292 R 1274814 CDS YP_007383169.1 443619313 14483971 complement(4153893..4157693) 1 NC_020163.1 COG3164 Predicted membrane protein; hypothetical protein 4157693 14483971 APECO78_20040 Escherichia coli APEC O78 hypothetical protein YP_007383169.1 4153893 R 1274814 CDS YP_007383170.1 443619314 14483972 complement(4157761..4159230) 1 NC_020163.1 COG1530 Ribonucleases G and E; ribonuclease G 4159230 14483972 APECO78_20045 Escherichia coli APEC O78 ribonuclease G YP_007383170.1 4157761 R 1274814 CDS YP_007383171.1 443619315 14483973 complement(4159220..4159813) 1 NC_020163.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein 4159813 14483973 APECO78_20050 Escherichia coli APEC O78 Maf-like protein YP_007383171.1 4159220 R 1274814 CDS YP_007383172.1 443619316 14483974 complement(4159822..4160310) 1 NC_020163.1 COG2891 Cell shape-determining protein; rod shape-determining protein MreD 4160310 14483974 APECO78_20055 Escherichia coli APEC O78 rod shape-determining protein MreD YP_007383172.1 4159822 R 1274814 CDS YP_007383173.1 443619317 14483975 complement(4160294..4160425) 1 NC_020163.1 hypothetical protein 4160425 14483975 APECO78_20060 Escherichia coli APEC O78 hypothetical protein YP_007383173.1 4160294 R 1274814 CDS YP_007383174.1 443619318 14483976 complement(4160310..4161413) 1 NC_020163.1 COG1792 Cell shape-determining protein; rod shape-determining protein MreC 4161413 14483976 APECO78_20065 Escherichia coli APEC O78 rod shape-determining protein MreC YP_007383174.1 4160310 R 1274814 CDS YP_007383175.1 443619319 14483977 complement(4161479..4162522) 1 NC_020163.1 COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB 4162522 14483977 APECO78_20070 Escherichia coli APEC O78 rod shape-determining protein MreB YP_007383175.1 4161479 R 1274814 CDS YP_007383176.1 443619320 14483978 complement(4162827..4164767) 1 NC_020163.1 COG2199 FOG: GGDEF domain; regulatory protein CsrD 4164767 14483978 APECO78_20075 Escherichia coli APEC O78 regulatory protein CsrD YP_007383176.1 4162827 R 1274814 CDS YP_007383177.1 443619321 14483979 4164919..4165893 1 NC_020163.1 COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase 4165893 14483979 APECO78_20080 Escherichia coli APEC O78 quinone oxidoreductase YP_007383177.1 4164919 D 1274814 CDS YP_007383178.1 443619322 14483980 4166179..4166298 1 NC_020163.1 hypothetical protein 4166298 14483980 APECO78_20085 Escherichia coli APEC O78 hypothetical protein YP_007383178.1 4166179 D 1274814 CDS YP_007383179.1 443619323 14483981 4166302..4166466 1 NC_020163.1 COG2717 Predicted membrane protein; hypothetical protein 4166466 14483981 APECO78_20090 Escherichia coli APEC O78 hypothetical protein YP_007383179.1 4166302 D 1274814 CDS YP_007383180.1 443619324 14483982 4166871..4167341 1 NC_020163.1 COG0511 Biotin carboxyl carrier protein; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 4167341 14483982 APECO78_20095 Escherichia coli APEC O78 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_007383180.1 4166871 D 1274814 CDS YP_007383181.1 443619325 14483983 4167352..4168701 1 NC_020163.1 COG0439 Biotin carboxylase; acetyl CoA carboxylase 4168701 14483983 APECO78_20100 Escherichia coli APEC O78 acetyl CoA carboxylase YP_007383181.1 4167352 D 1274814 CDS YP_007383182.1 443619326 14483984 4168810..4169052 1 NC_020163.1 COG3924 Predicted membrane protein; hypothetical protein 4169052 14483984 APECO78_20105 Escherichia coli APEC O78 hypothetical protein YP_007383182.1 4168810 D 1274814 CDS YP_007383183.1 443619327 14483985 4169042..4170493 1 NC_020163.1 COG4145 Na+/panthothenate symporter; sodium/panthothenate symporter 4170493 14483985 APECO78_20110 Escherichia coli APEC O78 sodium/panthothenate symporter YP_007383183.1 4169042 D 1274814 CDS YP_007383184.1 443619328 14483986 4170505..4171386 1 NC_020163.1 COG2264 Ribosomal protein L11 methylase; 50S ribosomal protein L11 methyltransferase 4171386 14483986 APECO78_20115 Escherichia coli APEC O78 50S ribosomal protein L11 methyltransferase YP_007383184.1 4170505 D 1274814 CDS YP_007383185.1 443619329 14483987 4171715..4172680 1 NC_020163.1 COG0042 tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase B 4172680 14483987 APECO78_20120 Escherichia coli APEC O78 tRNA-dihydrouridine synthase B YP_007383185.1 4171715 D 1274814 CDS YP_007383186.1 443619330 14483988 4172706..4173002 1 NC_020163.1 COG2901 Factor for inversion stimulation Fis, transcriptional activator; global DNA-binding transcriptional dual regulator Fis 4173002 14483988 APECO78_20125 Escherichia coli APEC O78 global DNA-binding transcriptional dual regulator Fis YP_007383186.1 4172706 D 1274814 CDS YP_007383187.1 443619331 14483989 4173088..4173972 1 NC_020163.1 COG0863 DNA modification methylase; methyltransferase 4173972 14483989 APECO78_20130 Escherichia coli APEC O78 methyltransferase YP_007383187.1 4173088 D 1274814 CDS YP_007383188.1 443619332 14483990 4174056..4174235 1 NC_020163.1 hypothetical protein 4174235 14483990 APECO78_20135 Escherichia coli APEC O78 hypothetical protein YP_007383188.1 4174056 D 1274814 CDS YP_007383189.1 443619333 14483991 complement(4174238..4174900) 1 NC_020163.1 COG1309 Transcriptional regulator; DNA-binding transcriptional regulator EnvR 4174900 14483991 APECO78_20140 Escherichia coli APEC O78 DNA-binding transcriptional regulator EnvR YP_007383189.1 4174238 R 1274814 CDS YP_007383190.1 443619334 14483992 4175299..4176456 1 NC_020163.1 COG0845 Membrane-fusion protein; hypothetical protein 4176456 14483992 APECO78_20145 Escherichia coli APEC O78 hypothetical protein YP_007383190.1 4175299 D 1274814 CDS YP_007383191.1 443619335 14483993 4176468..4179572 1 NC_020163.1 COG0841 Cation/multidrug efflux pump; multidrug efflux system protein AcrF 4179572 14483993 APECO78_20150 Escherichia coli APEC O78 multidrug efflux system protein AcrF YP_007383191.1 4176468 D 1274814 CDS YP_007383192.1 443619336 14483994 4179825..4180046 1 NC_020163.1 hypothetical protein 4180046 14483994 APECO78_20155 Escherichia coli APEC O78 hypothetical protein YP_007383192.1 4179825 D 1274814 CDS YP_007383193.1 443619337 14483995 4180477..4181502 1 NC_020163.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein 4181502 14483995 APECO78_20160 Escherichia coli APEC O78 amino acid ABC transporter substrate-binding protein YP_007383193.1 4180477 D 1274814 CDS YP_007383194.1 443619338 14483996 4181570..4182751 1 NC_020163.1 COG4597 ABC-type amino acid transport system, permease component; putative amino-acid transporter subunit 4182751 14483996 APECO78_20165 Escherichia coli APEC O78 putative amino-acid transporter subunit YP_007383194.1 4181570 D 1274814 CDS YP_007383195.1 443619339 14483997 4182761..4183864 1 NC_020163.1 COG0765 ABC-type amino acid transport system, permease component; transport system permease 4183864 14483997 APECO78_20170 Escherichia coli APEC O78 transport system permease YP_007383195.1 4182761 D 1274814 CDS YP_007383196.1 443619340 14483998 4183872..4184630 1 NC_020163.1 COG1126 ABC-type polar amino acid transport system, ATPase component; amino acid ABC transporter ATP-binding protein 4184630 14483998 APECO78_20175 Escherichia coli APEC O78 amino acid ABC transporter ATP-binding protein YP_007383196.1 4183872 D 1274814 CDS YP_007383197.1 443619341 14484678 complement(4190490..4190654) 1 NC_020163.1 hypothetical protein 4190654 14484678 APECO78_20180 Escherichia coli APEC O78 hypothetical protein YP_007383197.1 4190490 R 1274814 CDS YP_007383198.1 443619342 14484000 4190683..4191237 1 NC_020163.1 COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; hypothetical protein 4191237 14484000 APECO78_20185 Escherichia coli APEC O78 hypothetical protein YP_007383198.1 4190683 D 1274814 CDS YP_007383199.1 443619343 14484001 complement(4191213..4191470) 1 NC_020163.1 hypothetical protein 4191470 14484001 APECO78_20190 Escherichia coli APEC O78 hypothetical protein YP_007383199.1 4191213 R 1274814 CDS YP_007383200.1 443619344 14484002 complement(4191467..4192285) 1 NC_020163.1 COG0169 Shikimate 5-dehydrogenase; dehydroshikimate reductase, NAD(P)-binding protein 4192285 14484002 APECO78_20195 Escherichia coli APEC O78 dehydroshikimate reductase, NAD(P)-binding protein YP_007383200.1 4191467 R 1274814 CDS YP_007383201.1 443619345 14484003 complement(4192290..4192862) 1 NC_020163.1 COG0009 Putative translation factor (SUA5); tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein 4192862 14484003 APECO78_20200 Escherichia coli APEC O78 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein YP_007383201.1 4192290 R 1274814 CDS YP_007383202.1 443619346 14484004 complement(4192867..4193409) 1 NC_020163.1 COG0551 Zn-finger domain associated with topoisomerase type I; DNA topoisomerase 4193409 14484004 APECO78_20205 Escherichia coli APEC O78 DNA topoisomerase YP_007383202.1 4192867 R 1274814 CDS YP_007383203.1 443619347 14484005 complement(4193438..4193911) 1 NC_020163.1 COG2922 Uncharacterized protein conserved in bacteria; hypothetical protein 4193911 14484005 APECO78_20210 Escherichia coli APEC O78 hypothetical protein YP_007383203.1 4193438 R 1274814 CDS YP_007383204.1 443619348 14484006 complement(4193883..4195007) 1 NC_020163.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; DNA protecting protein DprA 4195007 14484006 APECO78_20215 Escherichia coli APEC O78 DNA protecting protein DprA YP_007383204.1 4193883 R 1274814 CDS YP_007383205.1 443619349 14484007 4195137..4195646 1 NC_020163.1 COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase 4195646 14484007 APECO78_20220 Escherichia coli APEC O78 peptide deformylase YP_007383205.1 4195137 D 1274814 CDS YP_007383206.1 443619350 14484008 4195661..4196608 1 NC_020163.1 COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 4196608 fmt 14484008 fmt Escherichia coli APEC O78 methionyl-tRNA formyltransferase YP_007383206.1 4195661 D 1274814 CDS YP_007383207.1 443619351 14484009 4196654..4197943 1 NC_020163.1 COG0144 tRNA and rRNA cytosine-C5-methylases; 16S rRNA methyltransferase B 4197943 14484009 APECO78_20230 Escherichia coli APEC O78 16S rRNA methyltransferase B YP_007383207.1 4196654 D 1274814 CDS YP_007383208.1 443619352 14484010 4197965..4199341 1 NC_020163.1 COG0569 K+ transport systems, NAD-binding component; potassium transporter peripheral membrane protein 4199341 14484010 APECO78_20235 Escherichia coli APEC O78 potassium transporter peripheral membrane protein YP_007383208.1 4197965 D 1274814 CDS YP_007383209.1 443619353 14484011 4199471..4199881 1 NC_020163.1 COG1970 Large-conductance mechanosensitive channel; large-conductance mechanosensitive channel 4199881 14484011 APECO78_20240 Escherichia coli APEC O78 large-conductance mechanosensitive channel YP_007383209.1 4199471 D 1274814 CDS YP_007383210.1 443619354 14484012 complement(4199878..4200096) 1 NC_020163.1 COG3036 Uncharacterized protein conserved in bacteria; hypothetical protein 4200096 14484012 APECO78_20245 Escherichia coli APEC O78 hypothetical protein YP_007383210.1 4199878 R 1274814 CDS YP_007383211.1 443619355 14484013 complement(4200152..4200577) 1 NC_020163.1 COG0789 Predicted transcriptional regulators; zinc-responsive transcriptional regulator 4200577 14484013 APECO78_20250 Escherichia coli APEC O78 zinc-responsive transcriptional regulator YP_007383211.1 4200152 R 1274814 CDS YP_007383212.1 443619356 14484014 complement(4200588..4200956) 1 NC_020163.1 hypothetical protein 4200956 14484014 APECO78_20255 Escherichia coli APEC O78 hypothetical protein YP_007383212.1 4200588 R 1274814 CDS YP_007383213.1 443619357 14484015 complement(4201063..4201446) 1 NC_020163.1 COG0203 Ribosomal protein L17; 50S ribosomal protein L17 4201446 14484015 APECO78_20260 Escherichia coli APEC O78 50S ribosomal protein L17 YP_007383213.1 4201063 R 1274814 CDS YP_007383214.1 443619358 14484016 complement(4201487..4202476) 1 NC_020163.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha 4202476 14484016 APECO78_20265 Escherichia coli APEC O78 DNA-directed RNA polymerase subunit alpha YP_007383214.1 4201487 R 1274814 CDS YP_007383215.1 443619359 14484017 complement(4202502..4203122) 1 NC_020163.1 COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 4203122 14484017 APECO78_20270 Escherichia coli APEC O78 30S ribosomal protein S4 YP_007383215.1 4202502 R 1274814 CDS YP_007383216.1 443619360 14484018 complement(4203156..4203545) 1 NC_020163.1 COG0100 Ribosomal protein S11; 30S ribosomal protein S11 4203545 14484018 APECO78_20275 Escherichia coli APEC O78 30S ribosomal protein S11 YP_007383216.1 4203156 R 1274814 CDS YP_007383217.1 443619361 14484019 complement(4203562..4203918) 1 NC_020163.1 COG0099 Ribosomal protein S13; 30S ribosomal protein S13 4203918 14484019 APECO78_20280 Escherichia coli APEC O78 30S ribosomal protein S13 YP_007383217.1 4203562 R 1274814 CDS YP_007383218.1 443619362 14484020 complement(4204065..4204181) 1 NC_020163.1 COG0257 Ribosomal protein L36; 50S ribosomal protein L36 4204181 14484020 APECO78_20285 Escherichia coli APEC O78 50S ribosomal protein L36 YP_007383218.1 4204065 R 1274814 CDS YP_007383219.1 443619363 14484021 complement(4204213..4205544) 1 NC_020163.1 COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY 4205544 14484021 APECO78_20290 Escherichia coli APEC O78 preprotein translocase subunit SecY YP_007383219.1 4204213 R 1274814 CDS YP_007383220.1 443619364 14484022 complement(4205552..4205986) 1 NC_020163.1 COG0200 Ribosomal protein L15; 50S ribosomal protein L15 4205986 14484022 APECO78_20295 Escherichia coli APEC O78 50S ribosomal protein L15 YP_007383220.1 4205552 R 1274814 CDS YP_007383221.1 443619365 14484023 complement(4205990..4206169) 1 NC_020163.1 COG1841 Ribosomal protein L30/L7E; 50S ribosomal protein L30 4206169 14484023 APECO78_20300 Escherichia coli APEC O78 50S ribosomal protein L30 YP_007383221.1 4205990 R 1274814 CDS YP_007383222.1 443619366 14484024 complement(4206173..4206676) 1 NC_020163.1 COG0098 Ribosomal protein S5; 30S ribosomal protein S5 4206676 rpsE 14484024 rpsE Escherichia coli APEC O78 30S ribosomal protein S5 YP_007383222.1 4206173 R 1274814 CDS YP_007383223.1 443619367 14484025 complement(4206691..4207044) 1 NC_020163.1 COG0256 Ribosomal protein L18; 50S ribosomal protein L18 4207044 14484025 APECO78_20310 Escherichia coli APEC O78 50S ribosomal protein L18 YP_007383223.1 4206691 R 1274814 CDS YP_007383224.1 443619368 14484026 complement(4207054..4207587) 1 NC_020163.1 COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 4207587 14484026 APECO78_20315 Escherichia coli APEC O78 50S ribosomal protein L6 YP_007383224.1 4207054 R 1274814 CDS YP_007383225.1 443619369 14484027 complement(4207600..4207992) 1 NC_020163.1 COG0096 Ribosomal protein S8; 30S ribosomal protein S8 4207992 14484027 APECO78_20320 Escherichia coli APEC O78 30S ribosomal protein S8 YP_007383225.1 4207600 R 1274814 CDS YP_007383226.1 443619370 14484028 complement(4208026..4208331) 1 NC_020163.1 COG0199 Ribosomal protein S14; 30S ribosomal protein S14 4208331 14484028 APECO78_20325 Escherichia coli APEC O78 30S ribosomal protein S14 YP_007383226.1 4208026 R 1274814 CDS YP_007383227.1 443619371 14484029 complement(4208346..4208885) 1 NC_020163.1 COG0094 Ribosomal protein L5; 50S ribosomal protein L5 4208885 14484029 APECO78_20330 Escherichia coli APEC O78 50S ribosomal protein L5 YP_007383227.1 4208346 R 1274814 CDS YP_007383228.1 443619372 14484030 complement(4208900..4209214) 1 NC_020163.1 COG0198 Ribosomal protein L24; 50S ribosomal protein L24 4209214 14484030 APECO78_20335 Escherichia coli APEC O78 50S ribosomal protein L24 YP_007383228.1 4208900 R 1274814 CDS YP_007383229.1 443619373 14484031 complement(4209225..4209596) 1 NC_020163.1 COG0093 Ribosomal protein L14; 50S ribosomal protein L14 4209596 14484031 APECO78_20340 Escherichia coli APEC O78 50S ribosomal protein L14 YP_007383229.1 4209225 R 1274814 CDS YP_007383230.1 443619374 14484032 complement(4209761..4210015) 1 NC_020163.1 COG0186 Ribosomal protein S17; 30S ribosomal protein S17 4210015 14484032 APECO78_20345 Escherichia coli APEC O78 30S ribosomal protein S17 YP_007383230.1 4209761 R 1274814 CDS YP_007383231.1 443619375 14484033 complement(4210015..4210206) 1 NC_020163.1 COG0255 Ribosomal protein L29; 50S ribosomal protein L29 4210206 14484033 APECO78_20350 Escherichia coli APEC O78 50S ribosomal protein L29 YP_007383231.1 4210015 R 1274814 CDS YP_007383232.1 443619376 14484034 complement(4210206..4210616) 1 NC_020163.1 COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 4210616 14484034 APECO78_20355 Escherichia coli APEC O78 50S ribosomal protein L16 YP_007383232.1 4210206 R 1274814 CDS YP_007383233.1 443619377 14484035 complement(4210629..4211330) 1 NC_020163.1 COG0092 Ribosomal protein S3; 30S ribosomal protein S3 4211330 14484035 APECO78_20360 Escherichia coli APEC O78 30S ribosomal protein S3 YP_007383233.1 4210629 R 1274814 CDS YP_007383234.1 443619378 14484036 complement(4211348..4211680) 1 NC_020163.1 COG0091 Ribosomal protein L22; 50S ribosomal protein L22 4211680 14484036 APECO78_20365 Escherichia coli APEC O78 50S ribosomal protein L22 YP_007383234.1 4211348 R 1274814 CDS YP_007383235.1 443619379 14484037 complement(4211695..4211973) 1 NC_020163.1 COG0185 Ribosomal protein S19; 30S ribosomal protein S19 4211973 14484037 APECO78_20370 Escherichia coli APEC O78 30S ribosomal protein S19 YP_007383235.1 4211695 R 1274814 CDS YP_007383236.1 443619380 14484038 complement(4211990..4212811) 1 NC_020163.1 COG0090 Ribosomal protein L2; 50S ribosomal protein L2 4212811 14484038 APECO78_20375 Escherichia coli APEC O78 50S ribosomal protein L2 YP_007383236.1 4211990 R 1274814 CDS YP_007383237.1 443619381 14484039 complement(4212829..4213131) 1 NC_020163.1 COG0089 Ribosomal protein L23; 50S ribosomal protein L23 4213131 14484039 APECO78_20380 Escherichia coli APEC O78 50S ribosomal protein L23 YP_007383237.1 4212829 R 1274814 CDS YP_007383238.1 443619382 14484040 complement(4213128..4213733) 1 NC_020163.1 COG0088 Ribosomal protein L4; 50S ribosomal protein L4 4213733 14484040 APECO78_20385 Escherichia coli APEC O78 50S ribosomal protein L4 YP_007383238.1 4213128 R 1274814 CDS YP_007383239.1 443619383 14484041 complement(4213744..4214373) 1 NC_020163.1 COG0087 Ribosomal protein L3; 50S ribosomal protein L3 4214373 14484041 APECO78_20390 Escherichia coli APEC O78 50S ribosomal protein L3 YP_007383239.1 4213744 R 1274814 CDS YP_007383240.1 443619384 14484042 complement(4214406..4214717) 1 NC_020163.1 COG0051 Ribosomal protein S10; 30S ribosomal protein S10 4214717 14484042 APECO78_20395 Escherichia coli APEC O78 30S ribosomal protein S10 YP_007383240.1 4214406 R 1274814 CDS YP_007383241.1 443619385 14484043 complement(4214955..4215374) 1 NC_020163.1 hypothetical protein 4215374 14484043 APECO78_20400 Escherichia coli APEC O78 hypothetical protein YP_007383241.1 4214955 R 1274814 CDS YP_007383242.1 443619386 14484044 complement(4215376..4216845) 1 NC_020163.1 COG3409 Putative peptidoglycan-binding domain-containing protein; general secretory pathway component, cryptic 4216845 14484044 APECO78_20405 Escherichia coli APEC O78 general secretory pathway component, cryptic YP_007383242.1 4215376 R 1274814 CDS YP_007383243.1 443619387 14484045 4217025..4217840 1 NC_020163.1 COG3031 Type II secretory pathway, component PulC; general secretory pathway component, cryptic 4217840 14484045 APECO78_20410 Escherichia coli APEC O78 general secretory pathway component, cryptic YP_007383243.1 4217025 D 1274814 CDS YP_007383244.1 443619388 14484046 4217824..4219776 1 NC_020163.1 COG1450 Type II secretory pathway, component PulD; general secretion pathway protein D 4219776 14484046 APECO78_20415 Escherichia coli APEC O78 general secretion pathway protein D YP_007383244.1 4217824 D 1274814 CDS YP_007383245.1 443619389 14484047 4219786..4221267 1 NC_020163.1 COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; general secretory pathway component, cryptic 4221267 14484047 APECO78_20420 Escherichia coli APEC O78 general secretory pathway component, cryptic YP_007383245.1 4219786 D 1274814 CDS YP_007383246.1 443619390 14484048 4221264..4222460 1 NC_020163.1 COG1459 Type II secretory pathway, component PulF; general secretory pathway component, cryptic 4222460 14484048 APECO78_20425 Escherichia coli APEC O78 general secretory pathway component, cryptic YP_007383246.1 4221264 D 1274814 CDS YP_007383247.1 443619391 14484049 4222470..4222907 1 NC_020163.1 COG2165 Type II secretory pathway, pseudopilin PulG; General secretion pathway protein G 4222907 14484049 APECO78_20430 Escherichia coli APEC O78 General secretion pathway protein G YP_007383247.1 4222470 D 1274814 CDS YP_007383248.1 443619392 14484050 4222915..4223424 1 NC_020163.1 COG2165 Type II secretory pathway, pseudopilin PulG; general secretion pathway protein H 4223424 14484050 APECO78_20435 Escherichia coli APEC O78 general secretion pathway protein H YP_007383248.1 4222915 D 1274814 CDS YP_007383249.1 443619393 14484051 4223421..4223798 1 NC_020163.1 COG2165 Type II secretory pathway, pseudopilin PulG; general secretion pathway protein i precursor 4223798 14484051 APECO78_20440 Escherichia coli APEC O78 general secretion pathway protein i precursor YP_007383249.1 4223421 D 1274814 CDS YP_007383250.1 443619394 14484052 4223791..4224378 1 NC_020163.1 COG4795 Type II secretory pathway, component PulJ; putative general secretory pathway component, cryptic 4224378 14484052 APECO78_20445 Escherichia coli APEC O78 putative general secretory pathway component, cryptic YP_007383250.1 4223791 D 1274814 CDS YP_007383251.1 443619395 14484053 4224371..4225354 1 NC_020163.1 COG3156 Type II secretory pathway, component PulK; general secretion pathway protein K 4225354 14484053 APECO78_20450 Escherichia coli APEC O78 general secretion pathway protein K YP_007383251.1 4224371 D 1274814 CDS YP_007383252.1 443619396 14484054 4225369..4226532 1 NC_020163.1 COG3297 Type II secretory pathway, component PulL; General secretion pathway protein L 4226532 14484054 APECO78_20455 Escherichia coli APEC O78 General secretion pathway protein L YP_007383252.1 4225369 D 1274814 CDS YP_007383253.1 443619397 14484055 4226529..4226990 1 NC_020163.1 general secretion pathway protein M 4226990 14484055 APECO78_20460 Escherichia coli APEC O78 general secretion pathway protein M YP_007383253.1 4226529 D 1274814 CDS YP_007383254.1 443619398 14484056 4226990..4227667 1 NC_020163.1 COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; bifunctional transmembrane prepilin leader peptidase/ methylase 4227667 14484056 APECO78_20465 Escherichia coli APEC O78 bifunctional transmembrane prepilin leader peptidase/ methylase YP_007383254.1 4226990 D 1274814 CDS YP_007383255.1 443619399 14484057 complement(4227696..4228172) 1 NC_020163.1 COG2193 Bacterioferritin (cytochrome b1); bacterioferrin 4228172 14484057 APECO78_20470 Escherichia coli APEC O78 bacterioferrin YP_007383255.1 4227696 R 1274814 CDS YP_007383256.1 443619400 14484058 complement(4228244..4228438) 1 NC_020163.1 COG2906 Bacterioferritin-associated ferredoxin; hypothetical protein 4228438 14484058 APECO78_20475 Escherichia coli APEC O78 hypothetical protein YP_007383256.1 4228244 R 1274814 CDS YP_007383257.1 443619401 14484059 complement(4228607..4231300) 1 NC_020163.1 COG3979 Uncharacterized protein contain chitin-binding domain type 3; periplasmic endochitinase 4231300 14484059 APECO78_20480 Escherichia coli APEC O78 periplasmic endochitinase YP_007383257.1 4228607 R 1274814 CDS YP_007383258.1 443619402 14484060 complement(4231592..4232776) 1 NC_020163.1 COG0050 GTPases - translation elongation factors; Elongation factor Tu 4232776 14484060 APECO78_20485 Escherichia coli APEC O78 Elongation factor Tu YP_007383258.1 4231592 R 1274814 CDS YP_007383259.1 443619403 14484061 complement(4232847..4234961) 1 NC_020163.1 COG0480 Translation elongation factors (GTPases); elongation factor G 4234961 14484061 APECO78_20490 Escherichia coli APEC O78 elongation factor G YP_007383259.1 4232847 R 1274814 CDS YP_007383260.1 443619404 14484062 complement(4235058..4235528) 1 NC_020163.1 COG0049 Ribosomal protein S7; 30S ribosomal protein S7 4235528 14484062 APECO78_20495 Escherichia coli APEC O78 30S ribosomal protein S7 YP_007383260.1 4235058 R 1274814 CDS YP_007383261.1 443619405 14484063 complement(4235625..4235999) 1 NC_020163.1 COG0048 Ribosomal protein S12; 30S ribosomal protein S12 4235999 14484063 APECO78_20500 Escherichia coli APEC O78 30S ribosomal protein S12 YP_007383261.1 4235625 R 1274814 CDS YP_007383262.1 443619406 14484064 complement(4236125..4236412) 1 NC_020163.1 COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur; sulfur transfer complex subunit TusB 4236412 14484064 APECO78_20505 Escherichia coli APEC O78 sulfur transfer complex subunit TusB YP_007383262.1 4236125 R 1274814 CDS YP_007383263.1 443619407 14484065 complement(4236420..4236779) 1 NC_020163.1 COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; sulfur relay protein TusC 4236779 14484065 APECO78_20510 Escherichia coli APEC O78 sulfur relay protein TusC YP_007383263.1 4236420 R 1274814 CDS YP_007383264.1 443619408 14484066 complement(4236779..4237165) 1 NC_020163.1 COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction; hypothetical protein 4237165 14484066 APECO78_20515 Escherichia coli APEC O78 hypothetical protein YP_007383264.1 4236779 R 1274814 CDS YP_007383265.1 443619409 14484067 complement(4237165..4237887) 1 NC_020163.1 COG2964 Uncharacterized protein conserved in bacteria; hypothetical protein 4237887 14484067 APECO78_20520 Escherichia coli APEC O78 hypothetical protein YP_007383265.1 4237165 R 1274814 CDS YP_007383266.1 443619410 14484068 complement(4238054..4238866) 1 NC_020163.1 COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; FKBP-type peptidyl-prolyl cis-trans isomerase 4238866 14484068 APECO78_20525 Escherichia coli APEC O78 FKBP-type peptidyl-prolyl cis-trans isomerase YP_007383266.1 4238054 R 1274814 CDS YP_007383267.1 443619411 14484069 4239087..4239305 1 NC_020163.1 COG2900 Uncharacterized protein conserved in bacteria; phi X174 lysis protein 4239305 14484069 APECO78_20530 Escherichia coli APEC O78 phi X174 lysis protein YP_007383267.1 4239087 D 1274814 CDS YP_007383268.1 443619412 14484070 complement(4239354..4239944) 1 NC_020163.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase 4239944 14484070 APECO78_20535 Escherichia coli APEC O78 FKBP-type peptidyl-prolyl cis-trans isomerase YP_007383268.1 4239354 R 1274814 CDS YP_007383269.1 443619413 14484071 complement(4240039..4240239) 1 NC_020163.1 COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; hypothetical protein 4240239 14484071 APECO78_20540 Escherichia coli APEC O78 hypothetical protein YP_007383269.1 4240039 R 1274814 CDS YP_007383270.1 443619414 14484072 complement(4240249..4242054) 1 NC_020163.1 COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein KefB 4242054 14484072 APECO78_20545 Escherichia coli APEC O78 glutathione-regulated potassium-efflux system protein KefB YP_007383270.1 4240249 R 1274814 CDS YP_007383271.1 443619415 14484073 complement(4242054..4242605) 1 NC_020163.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); glutathione-regulated potassium-efflux system ancillary protein KefG 4242605 14484073 APECO78_20550 Escherichia coli APEC O78 glutathione-regulated potassium-efflux system ancillary protein KefG YP_007383271.1 4242054 R 1274814 CDS YP_007383272.1 443619416 14484074 4242736..4244649 1 NC_020163.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 4244649 14484074 APECO78_20555 Escherichia coli APEC O78 ABC transporter ATP-binding protein YP_007383272.1 4242736 D 1274814 CDS YP_007383273.1 443619417 14484075 4244649..4245671 1 NC_020163.1 COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold; hydrolase 4245671 14484075 APECO78_20560 Escherichia coli APEC O78 hydrolase YP_007383273.1 4244649 D 1274814 CDS YP_007383274.1 443619418 14484076 4245665..4245883 1 NC_020163.1 COG3089 Uncharacterized protein conserved in bacteria; hypothetical protein 4245883 14484076 APECO78_20565 Escherichia coli APEC O78 hypothetical protein YP_007383274.1 4245665 D 1274814 CDS YP_007383275.1 443619419 14484077 4245937..4246806 1 NC_020163.1 COG3954 Phosphoribulokinase; phosphoribulokinase 4246806 14484077 APECO78_20570 Escherichia coli APEC O78 phosphoribulokinase YP_007383275.1 4245937 D 1274814 CDS YP_007383276.1 443619420 14484078 complement(4246861..4247265) 1 NC_020163.1 COG1765 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein 4247265 14484078 APECO78_20575 Escherichia coli APEC O78 hypothetical protein YP_007383276.1 4246861 R 1274814 CDS YP_007383277.1 443619421 14484079 4247567..4248199 1 NC_020163.1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; DNA-binding transcriptional dual regulator Crp 4248199 14484079 APECO78_20580 Escherichia coli APEC O78 DNA-binding transcriptional dual regulator Crp YP_007383277.1 4247567 D 1274814 CDS YP_007383278.1 443619422 14484080 4248250..4250340 1 NC_020163.1 COG1289 Predicted membrane protein; hypothetical protein 4250340 14484080 APECO78_20585 Escherichia coli APEC O78 hypothetical protein YP_007383278.1 4248250 D 1274814 CDS YP_007383279.1 443619423 14484081 complement(4250407..4251627) 1 NC_020163.1 COG4992 Ornithine/acetylornithine aminotransferase; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 4251627 argD 14484081 argD Escherichia coli APEC O78 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_007383279.1 4250407 R 1274814 CDS YP_007383280.1 443619424 14484082 complement(4251713..4252276) 1 NC_020163.1 COG0512 Anthranilate/para-aminobenzoate synthases component II; para-aminobenzoate synthase component II 4252276 14484082 APECO78_20595 Escherichia coli APEC O78 para-aminobenzoate synthase component II YP_007383280.1 4251713 R 1274814 CDS YP_007383281.1 443619425 14484083 complement(4252308..4252910) 1 NC_020163.1 COG2184 Protein involved in cell division; cell filamentation protein Fic 4252910 14484083 APECO78_20600 Escherichia coli APEC O78 cell filamentation protein Fic YP_007383281.1 4252308 R 1274814 CDS YP_007383282.1 443619426 14484084 complement(4252900..4253067) 1 NC_020163.1 hypothetical protein 4253067 14484084 APECO78_20605 Escherichia coli APEC O78 hypothetical protein YP_007383282.1 4252900 R 1274814 CDS YP_007383283.1 443619427 14484085 complement(4253172..4253744) 1 NC_020163.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase A (rotamase A) 4253744 14484085 APECO78_20610 Escherichia coli APEC O78 peptidyl-prolyl cis-trans isomerase A (rotamase A) YP_007383283.1 4253172 R 1274814 CDS YP_007383284.1 443619428 14484086 4254015..4255196 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; transporter 4255196 14484086 APECO78_20615 Escherichia coli APEC O78 transporter YP_007383284.1 4254015 D 1274814 CDS YP_007383285.1 443619429 14484087 4255458..4258001 1 NC_020163.1 COG1251 NAD(P)H-nitrite reductase; nitrite reductase subunit NirD 4258001 14484087 APECO78_20620 Escherichia coli APEC O78 nitrite reductase subunit NirD YP_007383285.1 4255458 D 1274814 CDS YP_007383286.1 443619430 14484088 4257998..4258324 1 NC_020163.1 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; nitrite reductase small subunit 4258324 14484088 APECO78_20625 Escherichia coli APEC O78 nitrite reductase small subunit YP_007383286.1 4257998 D 1274814 CDS YP_007383287.1 443619431 14484089 4258451..4259257 1 NC_020163.1 COG2116 Formate/nitrite family of transporters; nitrite transporter NirC 4259257 14484089 APECO78_20630 Escherichia coli APEC O78 nitrite transporter NirC YP_007383287.1 4258451 D 1274814 CDS YP_007383288.1 443619432 14484090 4259276..4260649 1 NC_020163.1 COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); siroheme synthase 4260649 14484090 APECO78_20635 Escherichia coli APEC O78 siroheme synthase YP_007383288.1 4259276 D 1274814 CDS YP_007383289.1 443619433 14484091 4260896..4261063 1 NC_020163.1 lipoprotein 4261063 14484091 APECO78_20640 Escherichia coli APEC O78 lipoprotein YP_007383289.1 4260896 D 1274814 CDS YP_007383290.1 443619434 14484092 4261358..4262695 1 NC_020163.1 COG0531 Amino acid transporters; fructoselysine transporter 4262695 14484092 APECO78_20645 Escherichia coli APEC O78 fructoselysine transporter YP_007383290.1 4261358 D 1274814 CDS YP_007383291.1 443619435 14484093 4262716..4263738 1 NC_020163.1 COG2222 Predicted phosphosugar isomerases; SIS family protein 4263738 14484093 APECO78_20650 Escherichia coli APEC O78 SIS family protein YP_007383291.1 4262716 D 1274814 CDS YP_007383292.1 443619436 14484094 4263788..4264618 1 NC_020163.1 COG1082 Sugar phosphate isomerases/epimerases; fructoselysine 3-epimerase 4264618 14484094 APECO78_20655 Escherichia coli APEC O78 fructoselysine 3-epimerase YP_007383292.1 4263788 D 1274814 CDS YP_007383293.1 443619437 14484095 4264615..4265400 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; fructoselysine 6-kinase 4265400 14484095 APECO78_20660 Escherichia coli APEC O78 fructoselysine 6-kinase YP_007383293.1 4264615 D 1274814 CDS YP_007383294.1 443619438 14484096 4265500..4266231 1 NC_020163.1 COG2188 Transcriptional regulators; DNA-binding transcriptional regulator FrlR 4266231 14484096 APECO78_20665 Escherichia coli APEC O78 DNA-binding transcriptional regulator FrlR YP_007383294.1 4265500 D 1274814 CDS YP_007383295.1 443619439 14484097 complement(4266383..4267468) 1 NC_020163.1 hypothetical protein 4267468 14484097 APECO78_20670 Escherichia coli APEC O78 hypothetical protein YP_007383295.1 4266383 R 1274814 CDS YP_007383296.1 443619440 14484098 complement(4267480..4268784) 1 NC_020163.1 hypothetical protein 4268784 14484098 APECO78_20675 Escherichia coli APEC O78 hypothetical protein YP_007383296.1 4267480 R 1274814 CDS YP_007383297.1 443619441 14484099 complement(4268796..4269149) 1 NC_020163.1 COG0698 Ribose 5-phosphate isomerase RpiB; hypothetical protein 4269149 14484099 APECO78_20680 Escherichia coli APEC O78 hypothetical protein YP_007383297.1 4268796 R 1274814 CDS YP_007383298.1 443619442 14484100 complement(4269160..4270038) 1 NC_020163.1 COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold; hydrolase 4270038 14484100 APECO78_20685 Escherichia coli APEC O78 hydrolase YP_007383298.1 4269160 R 1274814 CDS YP_007383299.1 443619443 14484101 complement(4270035..4271261) 1 NC_020163.1 COG1015 Phosphopentomutase; putative mutase 4271261 14484101 APECO78_20690 Escherichia coli APEC O78 putative mutase YP_007383299.1 4270035 R 1274814 CDS YP_007383300.1 443619444 14484102 complement(4271261..4272424) 1 NC_020163.1 COG3457 Predicted amino acid racemase; amino acid racemase 4272424 14484102 APECO78_20695 Escherichia coli APEC O78 amino acid racemase YP_007383300.1 4271261 R 1274814 CDS YP_007383301.1 443619445 14484103 complement(4272508..4272870) 1 NC_020163.1 hypothetical protein 4272870 14484103 APECO78_20700 Escherichia coli APEC O78 hypothetical protein YP_007383301.1 4272508 R 1274814 CDS YP_007383302.1 443619446 14484104 complement(4272887..4273792) 1 NC_020163.1 hypothetical protein 4273792 14484104 APECO78_20705 Escherichia coli APEC O78 hypothetical protein YP_007383302.1 4272887 R 1274814 CDS YP_007383303.1 443619447 14484105 complement(4274061..4275065) 1 NC_020163.1 COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA ligase 4275065 14484105 APECO78_20710 Escherichia coli APEC O78 tryptophanyl-tRNA ligase YP_007383303.1 4274061 R 1274814 CDS YP_007383304.1 443619448 14484106 complement(4275058..4275816) 1 NC_020163.1 COG0546 Predicted phosphatases; phosphoglycolate phosphatase 4275816 14484106 APECO78_20715 Escherichia coli APEC O78 phosphoglycolate phosphatase YP_007383304.1 4275058 R 1274814 CDS YP_007383305.1 443619449 14484107 complement(4275809..4276486) 1 NC_020163.1 COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase 4276486 14484107 APECO78_20720 Escherichia coli APEC O78 ribulose-phosphate 3-epimerase YP_007383305.1 4275809 R 1274814 CDS YP_007383306.1 443619450 14484108 complement(4276504..4277340) 1 NC_020163.1 COG0338 Site-specific DNA methylase; DNA adenine methylase 4277340 14484108 APECO78_20725 Escherichia coli APEC O78 DNA adenine methylase YP_007383306.1 4276504 R 1274814 CDS YP_007383307.1 443619451 14484109 complement(4277447..4278733) 1 NC_020163.1 COG3266 Uncharacterized protein conserved in bacteria; cell division protein DamX 4278733 14484109 APECO78_20730 Escherichia coli APEC O78 cell division protein DamX YP_007383307.1 4277447 R 1274814 CDS YP_007383308.1 443619452 14484110 complement(4278825..4279913) 1 NC_020163.1 COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase 4279913 14484110 APECO78_20735 Escherichia coli APEC O78 3-dehydroquinate synthase YP_007383308.1 4278825 R 1274814 CDS YP_007383309.1 443619453 14484111 complement(4279970..4280491) 1 NC_020163.1 COG0703 Shikimate kinase; shikimate kinase I 4280491 aroK 14484111 aroK Escherichia coli APEC O78 shikimate kinase I YP_007383309.1 4279970 R 1274814 CDS YP_007383310.1 443619454 14484112 complement(4280892..4282130) 1 NC_020163.1 COG4796 Type II secretory pathway, component HofQ; fimbrial transporter 4282130 14484112 APECO78_20745 Escherichia coli APEC O78 fimbrial transporter YP_007383310.1 4280892 R 1274814 CDS YP_007383311.1 443619455 14484113 complement(4282042..4282446) 1 NC_020163.1 hypothetical protein 4282446 14484113 APECO78_20750 Escherichia coli APEC O78 hypothetical protein YP_007383311.1 4282042 R 1274814 CDS YP_007383312.1 443619456 14484114 complement(4282436..4282876) 1 NC_020163.1 hypothetical protein 4282876 14484114 APECO78_20755 Escherichia coli APEC O78 hypothetical protein YP_007383312.1 4282436 R 1274814 CDS YP_007383313.1 443619457 14484115 complement(4282860..4283399) 1 NC_020163.1 PilN family protein 4283399 14484115 APECO78_20760 Escherichia coli APEC O78 PilN family protein YP_007383313.1 4282860 R 1274814 CDS YP_007383314.1 443619458 14484116 complement(4283444..4284178) 1 NC_020163.1 putative pilus assembly protein 4284178 14484116 APECO78_20765 Escherichia coli APEC O78 putative pilus assembly protein YP_007383314.1 4283444 R 1274814 CDS YP_007383315.1 443619459 14484117 4284298..4286850 1 NC_020163.1 COG5009 Membrane carboxypeptidase/penicillin-binding protein; penicillin-binding protein 1a 4286850 mrcA 14484117 mrcA Escherichia coli APEC O78 penicillin-binding protein 1a YP_007383315.1 4284298 D 1274814 CDS YP_007383316.1 443619460 14484118 complement(4287015..4287575) 1 NC_020163.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; adenosine nucleotide hydrolase NudE 4287575 14484118 APECO78_20775 Escherichia coli APEC O78 adenosine nucleotide hydrolase NudE YP_007383316.1 4287015 R 1274814 CDS YP_007383317.1 443619461 14484119 4287895..4290030 1 NC_020163.1 putative inner membrane protein 4290030 14484119 APECO78_20780 Escherichia coli APEC O78 putative inner membrane protein YP_007383317.1 4287895 D 1274814 CDS YP_007383318.1 443619462 14484120 4290095..4290763 1 NC_020163.1 COG1011 Predicted hydrolase (HAD superfamily); GMP/IMP nucleotidase 4290763 14484120 APECO78_20785 Escherichia coli APEC O78 GMP/IMP nucleotidase YP_007383318.1 4290095 D 1274814 CDS YP_007383319.1 443619463 14484121 4290774..4291175 1 NC_020163.1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); ribosome-associated heat shock protein Hsp15 4291175 14484121 APECO78_20790 Escherichia coli APEC O78 ribosome-associated heat shock protein Hsp15 YP_007383319.1 4290774 D 1274814 CDS YP_007383320.1 443619464 14484122 4291200..4292078 1 NC_020163.1 COG1281 Disulfide bond chaperones of the HSP33 family; Hsp33-like chaperonin 4292078 14484122 APECO78_20795 Escherichia coli APEC O78 Hsp33-like chaperonin YP_007383320.1 4291200 D 1274814 CDS YP_007383321.1 443619465 14484123 complement(4292213..4293937) 1 NC_020163.1 putative inner membrane protein 4293937 14484123 APECO78_20800 Escherichia coli APEC O78 putative inner membrane protein YP_007383321.1 4292213 R 1274814 CDS YP_007383322.1 443619466 14484124 4294316..4295938 1 NC_020163.1 COG1866 Phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase 4295938 14484124 APECO78_20805 Escherichia coli APEC O78 phosphoenolpyruvate carboxykinase YP_007383322.1 4294316 D 1274814 CDS YP_007383323.1 443619467 14484125 complement(4296014..4297366) 1 NC_020163.1 COG0642 Signal transduction histidine kinase; osmolarity sensor protein 4297366 envZ 14484125 envZ Escherichia coli APEC O78 osmolarity sensor protein YP_007383323.1 4296014 R 1274814 CDS YP_007383324.1 443619468 14484126 complement(4297363..4298082) 1 NC_020163.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; osmolarity response regulator 4298082 ompR 14484126 ompR Escherichia coli APEC O78 osmolarity response regulator YP_007383324.1 4297363 R 1274814 CDS YP_007383325.1 443619469 14484127 4298310..4298786 1 NC_020163.1 COG0782 Transcription elongation factor; transcription elongation factor GreB 4298786 greB 14484127 greB Escherichia coli APEC O78 transcription elongation factor GreB YP_007383325.1 4298310 D 1274814 CDS YP_007383326.1 443619470 14484128 4298883..4301204 1 NC_020163.1 COG2183 Transcriptional accessory protein; transcriptional accessory protein 4301204 14484128 APECO78_20825 Escherichia coli APEC O78 transcriptional accessory protein YP_007383326.1 4298883 D 1274814 CDS YP_007383327.1 443619471 14484129 4301642..4301869 1 NC_020163.1 COG1918 Fe2+ transport system protein A; ferrous iron transport protein A 4301869 14484129 APECO78_20830 Escherichia coli APEC O78 ferrous iron transport protein A YP_007383327.1 4301642 D 1274814 CDS YP_007383328.1 443619472 14484130 4301886..4304207 1 NC_020163.1 COG0370 Fe2+ transport system protein B; ferrous iron transport protein B 4304207 14484130 APECO78_20835 Escherichia coli APEC O78 ferrous iron transport protein B YP_007383328.1 4301886 D 1274814 CDS YP_007383329.1 443619473 14484131 4304207..4304443 1 NC_020163.1 ferrous iron transport protein FeoC 4304443 14484131 APECO78_20840 Escherichia coli APEC O78 ferrous iron transport protein FeoC YP_007383329.1 4304207 D 1274814 CDS YP_007383330.1 443619474 14484132 4304646..4305524 1 NC_020163.1 transposase 4305524 14484132 APECO78_20845 Escherichia coli APEC O78 transposase YP_007383330.1 4304646 D 1274814 CDS YP_007383331.1 443619475 14484133 complement(4305553..4306323) 1 NC_020163.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); carboxylesterase BioH 4306323 14484133 APECO78_20850 Escherichia coli APEC O78 carboxylesterase BioH YP_007383331.1 4305553 R 1274814 CDS YP_007383332.1 443619476 14484134 4306361..4307044 1 NC_020163.1 COG1040 Predicted amidophosphoribosyltransferases; DNA utilization protein GntX 4307044 14484134 APECO78_20855 Escherichia coli APEC O78 DNA utilization protein GntX YP_007383332.1 4306361 D 1274814 CDS YP_007383333.1 443619477 14484135 4307103..4307678 1 NC_020163.1 COG0316 Uncharacterized conserved protein; Fe/S biogenesis protein NfuA 4307678 14484135 APECO78_20860 Escherichia coli APEC O78 Fe/S biogenesis protein NfuA YP_007383333.1 4307103 D 1274814 CDS YP_007383334.1 443619478 14484136 4308039..4309355 1 NC_020163.1 COG2610 H+/gluconate symporter and related permeases; high-affinity gluconate transporter 4309355 14484136 APECO78_20865 Escherichia coli APEC O78 high-affinity gluconate transporter YP_007383334.1 4308039 D 1274814 CDS YP_007383335.1 443619479 14484137 complement(4309400..4311484) 1 NC_020163.1 COG1640 4-alpha-glucanotransferase; 4-alpha-glucanotransferase 4311484 malQ 14484137 malQ Escherichia coli APEC O78 4-alpha-glucanotransferase YP_007383335.1 4309400 R 1274814 CDS YP_007383336.1 443619480 14484138 complement(4311494..4313887) 1 NC_020163.1 COG0058 Glucan phosphorylase; maltodextrin phosphorylase 4313887 14484138 APECO78_20875 Escherichia coli APEC O78 maltodextrin phosphorylase YP_007383336.1 4311494 R 1274814 CDS YP_007383337.1 443619481 14484139 4314499..4317204 1 NC_020163.1 COG2909 ATP-dependent transcriptional regulator; transcriptional regulator MalT 4317204 14484139 APECO78_20880 Escherichia coli APEC O78 transcriptional regulator MalT YP_007383337.1 4314499 D 1274814 CDS YP_007383338.1 443619482 14484140 complement(4317247..4318263) 1 NC_020163.1 COG0430 RNA 3'-terminal phosphate cyclase; RNA 3'-terminal-phosphate cyclase 4318263 14484140 APECO78_20885 Escherichia coli APEC O78 RNA 3'-terminal-phosphate cyclase YP_007383338.1 4317247 R 1274814 CDS YP_007383339.1 443619483 14484141 complement(4318267..4319493) 1 NC_020163.1 COG1690 Uncharacterized conserved protein; hypothetical protein 4319493 14484141 APECO78_20890 Escherichia coli APEC O78 hypothetical protein YP_007383339.1 4318267 R 1274814 CDS YP_007383340.1 443619484 14484142 4319682..4321280 1 NC_020163.1 COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain; transcriptional regulatory protein RtcR 4321280 14484142 APECO78_20895 Escherichia coli APEC O78 transcriptional regulatory protein RtcR YP_007383340.1 4319682 D 1274814 CDS YP_007383341.1 443619485 14484143 complement(4321262..4322020) 1 NC_020163.1 COG1349 Transcriptional regulators of sugar metabolism; DNA-binding transcriptional repressor GlpR 4322020 14484143 APECO78_20900 Escherichia coli APEC O78 DNA-binding transcriptional repressor GlpR YP_007383341.1 4321262 R 1274814 CDS YP_007383342.1 443619486 14484144 complement(4322037..4322867) 1 NC_020163.1 COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); intramembrane serine protease GlpG 4322867 14484144 APECO78_20905 Escherichia coli APEC O78 intramembrane serine protease GlpG YP_007383342.1 4322037 R 1274814 CDS YP_007383343.1 443619487 14484145 complement(4322912..4323238) 1 NC_020163.1 COG0607 Rhodanese-related sulfurtransferase; thiosulfate sulfurtransferase 4323238 14484145 APECO78_20910 Escherichia coli APEC O78 thiosulfate sulfurtransferase YP_007383343.1 4322912 R 1274814 CDS YP_007383344.1 443619488 14484146 4323428..4324933 1 NC_020163.1 COG0578 Glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 4324933 14484146 APECO78_20915 Escherichia coli APEC O78 glycerol-3-phosphate dehydrogenase YP_007383344.1 4323428 D 1274814 CDS YP_007383345.1 443619489 14484147 complement(4324987..4325592) 1 NC_020163.1 hypothetical protein 4325592 14484147 APECO78_20920 Escherichia coli APEC O78 hypothetical protein YP_007383345.1 4324987 R 1274814 CDS YP_007383346.1 443619490 14484148 complement(4326365..4327075) 1 NC_020163.1 hypothetical protein 4327075 14484148 APECO78_20925 Escherichia coli APEC O78 hypothetical protein YP_007383346.1 4326365 R 1274814 CDS YP_007383347.1 443619491 14484149 complement(4327090..4328607) 1 NC_020163.1 COG0226 ABC-type phosphate transport system, periplasmic component; membrane protein; ATP binding protein of ABC transporter 4328607 14484149 APECO78_20930 Escherichia coli APEC O78 membrane protein; ATP binding protein of ABC transporter YP_007383347.1 4327090 R 1274814 CDS YP_007383348.1 443619492 14484150 complement(4328723..4331170) 1 NC_020163.1 COG0058 Glucan phosphorylase; glycogen phosphorylase 4331170 14484150 APECO78_20935 Escherichia coli APEC O78 glycogen phosphorylase YP_007383348.1 4328723 R 1274814 CDS YP_007383349.1 443619493 14484151 complement(4331189..4332622) 1 NC_020163.1 COG0297 Glycogen synthase; glycogen synthase 4332622 14484151 APECO78_20940 Escherichia coli APEC O78 glycogen synthase YP_007383349.1 4331189 R 1274814 CDS YP_007383350.1 443619494 14484152 complement(4332622..4333917) 1 NC_020163.1 COG0448 ADP-glucose pyrophosphorylase; glucose-1-phosphate adenylyltransferase 4333917 14484152 APECO78_20945 Escherichia coli APEC O78 glucose-1-phosphate adenylyltransferase YP_007383350.1 4332622 R 1274814 CDS YP_007383351.1 443619495 14484153 complement(4333935..4335908) 1 NC_020163.1 COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; glycogen debranching enzyme 4335908 14484153 APECO78_20950 Escherichia coli APEC O78 glycogen debranching enzyme YP_007383351.1 4333935 R 1274814 CDS YP_007383352.1 443619496 14484154 complement(4335905..4338091) 1 NC_020163.1 COG0296 1,4-alpha-glucan branching enzyme; glycogen branching protein 4338091 14484154 APECO78_20955 Escherichia coli APEC O78 glycogen branching protein YP_007383352.1 4335905 R 1274814 CDS YP_007383353.1 443619497 14484155 complement(4338364..4339467) 1 NC_020163.1 COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 4339467 14484155 APECO78_20960 Escherichia coli APEC O78 aspartate-semialdehyde dehydrogenase YP_007383353.1 4338364 R 1274814 CDS YP_007383354.1 443619498 14484156 4339660..4340253 1 NC_020163.1 COG2095 Multiple antibiotic transporter; antibiotic transporter 4340253 14484156 APECO78_20965 Escherichia coli APEC O78 antibiotic transporter YP_007383354.1 4339660 D 1274814 CDS YP_007383355.1 443619499 14484157 complement(4340310..4341650) 1 NC_020163.1 COG2610 H+/gluconate symporter and related permeases; low affinity gluconate transporter 4341650 14484157 APECO78_20970 Escherichia coli APEC O78 low affinity gluconate transporter YP_007383355.1 4340310 R 1274814 CDS YP_007383356.1 443619500 14484158 complement(4341654..4342181) 1 NC_020163.1 COG3265 Gluconate kinase; gluconate kinase 4342181 14484158 APECO78_20975 Escherichia coli APEC O78 gluconate kinase YP_007383356.1 4341654 R 1274814 CDS YP_007383357.1 443619501 14484159 complement(4342320..4343315) 1 NC_020163.1 COG1609 Transcriptional regulators; gluconate operon transcriptional regulator 4343315 14484159 APECO78_20980 Escherichia coli APEC O78 gluconate operon transcriptional regulator YP_007383357.1 4342320 R 1274814 CDS YP_007383358.1 443619502 14484160 complement(4343539..4344234) 1 NC_020163.1 COG1741 Pirin-related protein; protein yhhW 4344234 14484160 APECO78_20985 Escherichia coli APEC O78 protein yhhW YP_007383358.1 4343539 R 1274814 CDS YP_007383359.1 443619503 14484161 complement(4344357..4345394) 1 NC_020163.1 COG0673 Predicted dehydrogenases and related proteins; oxidoreductase 4345394 14484161 APECO78_20990 Escherichia coli APEC O78 oxidoreductase YP_007383359.1 4344357 R 1274814 CDS YP_007383360.1 443619504 14484162 4345727..4346215 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase YhhY 4346215 14484162 APECO78_20995 Escherichia coli APEC O78 acetyltransferase YhhY YP_007383360.1 4345727 D 1274814 CDS YP_007383361.1 443619505 14484163 4346325..4346609 1 NC_020163.1 hypothetical protein 4346609 14484163 APECO78_21000 Escherichia coli APEC O78 hypothetical protein YP_007383361.1 4346325 D 1274814 CDS YP_007383362.1 443619506 14484164 complement(4346647..4348380) 1 NC_020163.1 COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase 4348380 ggt 14484164 ggt Escherichia coli APEC O78 gamma-glutamyltranspeptidase YP_007383362.1 4346647 R 1274814 CDS YP_007383363.1 443619507 14484165 4348501..4348941 1 NC_020163.1 hypothetical protein 4348941 14484165 APECO78_21010 Escherichia coli APEC O78 hypothetical protein YP_007383363.1 4348501 D 1274814 CDS YP_007383364.1 443619508 14484166 complement(4348928..4349671) 1 NC_020163.1 COG0584 Glycerophosphoryl diester phosphodiesterase; cytoplasmic glycerophosphodiester phosphodiesterase 4349671 ugpQ 14484166 ugpQ Escherichia coli APEC O78 cytoplasmic glycerophosphodiester phosphodiesterase YP_007383364.1 4348928 R 1274814 CDS YP_007383365.1 443619509 14484167 complement(4349668..4350738) 1 NC_020163.1 COG3839 ABC-type sugar transport systems, ATPase components; glycerol-3-phosphate transporter ATP-binding subunit 4350738 ugpC 14484167 ugpC Escherichia coli APEC O78 glycerol-3-phosphate transporter ATP-binding subunit YP_007383365.1 4349668 R 1274814 CDS YP_007383366.1 443619510 14484168 complement(4350740..4351585) 1 NC_020163.1 COG0395 ABC-type sugar transport system, permease component; glycerol-3-phosphate transporter membrane protein 4351585 14484168 APECO78_21025 Escherichia coli APEC O78 glycerol-3-phosphate transporter membrane protein YP_007383366.1 4350740 R 1274814 CDS YP_007383367.1 443619511 14484169 complement(4351582..4352469) 1 NC_020163.1 COG1175 ABC-type sugar transport systems, permease components; glycerol-3-phosphate transporter permease 4352469 14484169 APECO78_21030 Escherichia coli APEC O78 glycerol-3-phosphate transporter permease YP_007383367.1 4351582 R 1274814 CDS YP_007383368.1 443619512 14484170 complement(4352567..4353883) 1 NC_020163.1 COG1653 ABC-type sugar transport system, periplasmic component; glycerol-3-phosphate transporter periplasmic binding protein 4353883 14484170 APECO78_21035 Escherichia coli APEC O78 glycerol-3-phosphate transporter periplasmic binding protein YP_007383368.1 4352567 R 1274814 CDS YP_007383369.1 443619513 14484171 complement(4354097..4354213) 1 NC_020163.1 hypothetical protein 4354213 14484171 APECO78_21040 Escherichia coli APEC O78 hypothetical protein YP_007383369.1 4354097 R 1274814 CDS YP_007383370.1 443619514 14484172 complement(4354116..4354244) 1 NC_020163.1 hypothetical protein 4354244 14484172 APECO78_21045 Escherichia coli APEC O78 hypothetical protein YP_007383370.1 4354116 R 1274814 CDS YP_007383371.1 443619515 14484173 complement(4354280..4354981) 1 NC_020163.1 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine transporter 4354981 14484173 APECO78_21050 Escherichia coli APEC O78 leucine/isoleucine/valine transporter YP_007383371.1 4354280 R 1274814 CDS YP_007383372.1 443619516 14484174 complement(4354995..4355762) 1 NC_020163.1 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; leucine/isoleucine/valine transporter ATP-binding subunit 4355762 14484174 APECO78_21055 Escherichia coli APEC O78 leucine/isoleucine/valine transporter ATP-binding subunit YP_007383372.1 4354995 R 1274814 CDS YP_007383373.1 443619517 14484175 complement(4355759..4357036) 1 NC_020163.1 COG4177 ABC-type branched-chain amino acid transport system, permease component; leucine/isoleucine/valine transporter permease subunit 4357036 livM 14484175 livM Escherichia coli APEC O78 leucine/isoleucine/valine transporter permease subunit YP_007383373.1 4355759 R 1274814 CDS YP_007383374.1 443619518 14484176 complement(4357033..4357959) 1 NC_020163.1 COG0559 Branched-chain amino acid ABC-type transport system, permease components; branched-chain amino acid transporter permease subunit LivH 4357959 14484176 APECO78_21065 Escherichia coli APEC O78 branched-chain amino acid transporter permease subunit LivH YP_007383374.1 4357033 R 1274814 CDS YP_007383375.1 443619519 14484177 complement(4358007..4359116) 1 NC_020163.1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine ABC transporter subunit substrate-binding protein LivK 4359116 14484177 APECO78_21070 Escherichia coli APEC O78 leucine ABC transporter subunit substrate-binding protein LivK YP_007383375.1 4358007 R 1274814 CDS YP_007383376.1 443619520 14484178 4359540..4359923 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 4359923 14484178 APECO78_21075 Escherichia coli APEC O78 hypothetical protein YP_007383376.1 4359540 D 1274814 CDS YP_007383377.1 443619521 14484179 complement(4359920..4360447) 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 4360447 14484179 APECO78_21080 Escherichia coli APEC O78 hypothetical protein YP_007383377.1 4359920 R 1274814 CDS YP_007383378.1 443619522 14484180 complement(4360454..4360720) 1 NC_020163.1 COG4453 Uncharacterized protein conserved in bacteria; hypothetical protein 4360720 14484180 APECO78_21085 Escherichia coli APEC O78 hypothetical protein YP_007383378.1 4360454 R 1274814 CDS YP_007383379.1 443619523 14484181 complement(4360870..4361973) 1 NC_020163.1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; leucine ABC transporter subunit substrate-binding protein LivK 4361973 14484181 APECO78_21090 Escherichia coli APEC O78 leucine ABC transporter subunit substrate-binding protein LivK YP_007383379.1 4360870 R 1274814 CDS YP_007383380.1 443619524 14484182 complement(4362245..4363099) 1 NC_020163.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase factor sigma-32 4363099 14484182 APECO78_21095 Escherichia coli APEC O78 RNA polymerase factor sigma-32 YP_007383380.1 4362245 R 1274814 CDS YP_007383381.1 443619525 14484183 complement(4363344..4364402) 1 NC_020163.1 COG2177 Cell division protein; cell division protein 4364402 14484183 APECO78_21100 Escherichia coli APEC O78 cell division protein YP_007383381.1 4363344 R 1274814 CDS YP_007383382.1 443619526 14484184 complement(4364395..4365063) 1 NC_020163.1 COG2884 Predicted ATPase involved in cell division; cell division protein FtsE 4365063 14484184 APECO78_21105 Escherichia coli APEC O78 cell division protein FtsE YP_007383382.1 4364395 R 1274814 CDS YP_007383383.1 443619527 14484185 complement(4365066..4366559) 1 NC_020163.1 COG0552 Signal recognition particle GTPase; signal recognition particle-docking protein FtsY 4366559 14484185 APECO78_21110 Escherichia coli APEC O78 signal recognition particle-docking protein FtsY YP_007383383.1 4365066 R 1274814 CDS YP_007383384.1 443619528 14484186 4366709..4367305 1 NC_020163.1 COG0742 N6-adenine-specific methylase; 16S rRNA m(2)G966-methyltransferase 4367305 rsmD 14484186 rsmD Escherichia coli APEC O78 16S rRNA m(2)G966-methyltransferase YP_007383384.1 4366709 D 1274814 CDS YP_007383385.1 443619529 14484187 4367295..4367564 1 NC_020163.1 COG3776 Predicted membrane protein; hypothetical protein 4367564 14484187 APECO78_21120 Escherichia coli APEC O78 hypothetical protein YP_007383385.1 4367295 D 1274814 CDS YP_007383386.1 443619530 14484188 complement(4367567..4367926) 1 NC_020163.1 hypothetical protein 4367926 14484188 APECO78_21125 Escherichia coli APEC O78 hypothetical protein YP_007383386.1 4367567 R 1274814 CDS YP_007383387.1 443619531 14484189 4368067..4368693 1 NC_020163.1 COG3714 Predicted membrane protein; hypothetical protein 4368693 14484189 APECO78_21130 Escherichia coli APEC O78 hypothetical protein YP_007383387.1 4368067 D 1274814 CDS YP_007383388.1 443619532 14484190 4368767..4370965 1 NC_020163.1 COG2217 Cation transport ATPase; zinc/cadmium/mercury/lead-transporting ATPase 4370965 zntA 14484190 zntA Escherichia coli APEC O78 zinc/cadmium/mercury/lead-transporting ATPase YP_007383388.1 4368767 D 1274814 CDS YP_007383389.1 443619533 14484191 complement(4371067..4371312) 1 NC_020163.1 COG0425 Predicted redox protein, regulator of disulfide bond formation; sulfur transfer protein SirA 4371312 14484191 APECO78_21140 Escherichia coli APEC O78 sulfur transfer protein SirA YP_007383389.1 4371067 R 1274814 CDS YP_007383390.1 443619534 14484192 4371533..4372198 1 NC_020163.1 COG1738 Uncharacterized conserved protein; hypothetical protein 4372198 14484192 APECO78_21145 Escherichia coli APEC O78 hypothetical protein YP_007383390.1 4371533 D 1274814 CDS YP_007383391.1 443619535 14484193 4372271..4372828 1 NC_020163.1 hypothetical protein 4372828 14484193 APECO78_21150 Escherichia coli APEC O78 hypothetical protein YP_007383391.1 4372271 D 1274814 CDS YP_007383392.1 443619536 14484194 complement(4372832..4374049) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; major facilitator superfamily transporter 4374049 14484194 APECO78_21155 Escherichia coli APEC O78 major facilitator superfamily transporter YP_007383392.1 4372832 R 1274814 CDS YP_007383393.1 443619537 14484195 4374181..4375230 1 NC_020163.1 COG0628 Predicted permease; inner membrane protein 4375230 14484195 APECO78_21160 Escherichia coli APEC O78 inner membrane protein YP_007383393.1 4374181 D 1274814 CDS YP_007383394.1 443619538 14484196 4375285..4375872 1 NC_020163.1 COG2091 Phosphopantetheinyl transferase; holo-ACP synthase 4375872 14484196 APECO78_21165 Escherichia coli APEC O78 holo-ACP synthase YP_007383394.1 4375285 D 1274814 CDS YP_007383395.1 443619539 14484197 4375983..4377557 1 NC_020163.1 COG0747 ABC-type dipeptide transport system, periplasmic component; nickel ABC transporter periplasmic-binding protein 4377557 14484197 APECO78_21170 Escherichia coli APEC O78 nickel ABC transporter periplasmic-binding protein YP_007383395.1 4375983 D 1274814 CDS YP_007383396.1 443619540 14484198 4377557..4378501 1 NC_020163.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; nickel transporter permease NikB 4378501 14484198 APECO78_21175 Escherichia coli APEC O78 nickel transporter permease NikB YP_007383396.1 4377557 D 1274814 CDS YP_007383397.1 443619541 14484199 4378498..4379331 1 NC_020163.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; nickel transporter permease NikC 4379331 14484199 APECO78_21180 Escherichia coli APEC O78 nickel transporter permease NikC YP_007383397.1 4378498 D 1274814 CDS YP_007383398.1 443619542 14484200 4379331..4380095 1 NC_020163.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; nickel transporter subunit 4380095 14484200 APECO78_21185 Escherichia coli APEC O78 nickel transporter subunit YP_007383398.1 4379331 D 1274814 CDS YP_007383399.1 443619543 14484201 4380092..4380898 1 NC_020163.1 COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; nickel transporter ATP-binding protein NikE 4380898 nikE 14484201 nikE Escherichia coli APEC O78 nickel transporter ATP-binding protein NikE YP_007383399.1 4380092 D 1274814 CDS YP_007383400.1 443619544 14484202 4380904..4381305 1 NC_020163.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator 4381305 14484202 APECO78_21195 Escherichia coli APEC O78 nickel responsive regulator YP_007383400.1 4380904 D 1274814 CDS YP_007383401.1 443619545 14484203 complement(4381425..4381784) 1 NC_020163.1 COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters; HicB family protein 4381784 14484203 APECO78_21200 Escherichia coli APEC O78 HicB family protein YP_007383401.1 4381425 R 1274814 CDS YP_007383402.1 443619546 14484204 complement(4382115..4383239) 1 NC_020163.1 COG0842 ABC-type multidrug transport system, permease component; putative transport protein 4383239 14484204 APECO78_21205 Escherichia coli APEC O78 putative transport protein YP_007383402.1 4382115 R 1274814 CDS YP_007383403.1 443619547 14484205 complement(4383239..4385974) 1 NC_020163.1 COG1131 ABC-type multidrug transport system, ATPase component; putative ABC transporter ATP-binding protein 4385974 14484205 APECO78_21210 Escherichia coli APEC O78 putative ABC transporter ATP-binding protein YP_007383403.1 4383239 R 1274814 CDS YP_007383404.1 443619548 14484206 complement(4385971..4387038) 1 NC_020163.1 COG0845 Membrane-fusion protein; HlyD family secretion protein 4387038 14484206 APECO78_21215 Escherichia coli APEC O78 HlyD family secretion protein YP_007383404.1 4385971 R 1274814 CDS YP_007383405.1 443619549 14484207 complement(4387404..4389026) 1 NC_020163.1 hypothetical protein 4389026 14484207 APECO78_21220 Escherichia coli APEC O78 hypothetical protein YP_007383405.1 4387404 R 1274814 CDS YP_007383406.1 443619550 14484208 complement(4389288..4390877) 1 NC_020163.1 hypothetical protein 4390877 14484208 APECO78_21225 Escherichia coli APEC O78 hypothetical protein YP_007383406.1 4389288 R 1274814 CDS YP_007383407.1 443619551 14484209 4391261..4392313 1 NC_020163.1 hypothetical protein 4392313 14484209 APECO78_21230 Escherichia coli APEC O78 hypothetical protein YP_007383407.1 4391261 D 1274814 CDS YP_007383408.1 443619552 14484210 complement(4392407..4392493) 1 NC_020163.1 hypothetical protein 4392493 14484210 APECO78_21235 Escherichia coli APEC O78 hypothetical protein YP_007383408.1 4392407 R 1274814 CDS YP_007383409.1 443619553 14484211 complement(4392628..4393830) 1 NC_020163.1 COG2081 Predicted flavoproteins; putative oxidoreductase 4393830 14484211 APECO78_21240 Escherichia coli APEC O78 putative oxidoreductase YP_007383409.1 4392628 R 1274814 CDS YP_007383410.1 443619554 14484212 4394062..4395561 1 NC_020163.1 COG0306 Phosphate/sulphate permeases; Low-affinity inorganic phosphate transporter 1 4395561 14484212 APECO78_21245 Escherichia coli APEC O78 Low-affinity inorganic phosphate transporter 1 YP_007383410.1 4394062 D 1274814 CDS YP_007383411.1 443619555 14484213 complement(4395632..4395967) 1 NC_020163.1 universal stress protein UspB 4395967 14484213 APECO78_21250 Escherichia coli APEC O78 universal stress protein UspB YP_007383411.1 4395632 R 1274814 CDS YP_007383412.1 443619556 14484214 4396358..4396792 1 NC_020163.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein A 4396792 14484214 APECO78_21255 Escherichia coli APEC O78 universal stress protein A YP_007383412.1 4396358 D 1274814 CDS YP_007383413.1 443619557 14484215 4397110..4398579 1 NC_020163.1 COG3104 Dipeptide/tripeptide permease; dipeptide/tripeptide permease B 4398579 14484215 APECO78_21260 Escherichia coli APEC O78 dipeptide/tripeptide permease B YP_007383413.1 4397110 D 1274814 CDS YP_007383414.1 443619558 14484216 complement(4398628..4399380) 1 NC_020163.1 COG0500 SAM-dependent methyltransferases; methyltransferase 4399380 14484216 APECO78_21265 Escherichia coli APEC O78 methyltransferase YP_007383414.1 4398628 R 1274814 CDS YP_007383415.1 443619559 14484217 complement(4399388..4401430) 1 NC_020163.1 COG0339 Zn-dependent oligopeptidases; oligopeptidase A 4401430 14484217 APECO78_21270 Escherichia coli APEC O78 oligopeptidase A YP_007383415.1 4399388 R 1274814 CDS YP_007383416.1 443619560 14484218 4401633..4402475 1 NC_020163.1 COG2961 Protein involved in catabolism of external DNA; DNA processing protein 4402475 14484218 APECO78_21275 Escherichia coli APEC O78 DNA processing protein YP_007383416.1 4401633 D 1274814 CDS YP_007383417.1 443619561 14484219 4402547..4403899 1 NC_020163.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; glutathione reductase 4403899 14484219 APECO78_21280 Escherichia coli APEC O78 glutathione reductase YP_007383417.1 4402547 D 1274814 CDS YP_007383418.1 443619562 14484220 complement(4403953..4404102) 1 NC_020163.1 hypothetical protein 4404102 14484220 APECO78_21285 Escherichia coli APEC O78 hypothetical protein YP_007383418.1 4403953 R 1274814 CDS YP_007383419.1 443619563 14484221 4404776..4405129 1 NC_020163.1 COG0640 Predicted transcriptional regulators; DNA-binding transcriptional repressor ArsR 4405129 14484221 APECO78_21290 Escherichia coli APEC O78 DNA-binding transcriptional repressor ArsR YP_007383419.1 4404776 D 1274814 CDS YP_007383420.1 443619564 14484222 4405183..4406472 1 NC_020163.1 COG1055 Na+/H+ antiporter NhaD and related arsenite permeases; arsenical pump membrane protein 4406472 14484222 APECO78_21295 Escherichia coli APEC O78 arsenical pump membrane protein YP_007383420.1 4405183 D 1274814 CDS YP_007383421.1 443619565 14484223 4406485..4406910 1 NC_020163.1 COG1393 Arsenate reductase and related proteins, glutaredoxin family; arsenate reductase 4406910 14484223 APECO78_21300 Escherichia coli APEC O78 arsenate reductase YP_007383421.1 4406485 D 1274814 CDS YP_007383422.1 443619566 14484224 4407535..4408380 1 NC_020163.1 hypothetical protein 4408380 14484224 APECO78_21305 Escherichia coli APEC O78 hypothetical protein YP_007383422.1 4407535 D 1274814 CDS YP_007383423.1 443619567 14484225 4409005..4409571 1 NC_020163.1 COG3065 Starvation-inducible outer membrane lipoprotein; outer membrane lipoprotein 4409571 14484225 APECO78_21310 Escherichia coli APEC O78 outer membrane lipoprotein YP_007383423.1 4409005 D 1274814 CDS YP_007383424.1 443619568 14484226 4409727..4410257 1 NC_020163.1 COG0055 F0F1-type ATP synthase, beta subunit; hypothetical protein 4410257 14484226 APECO78_21315 Escherichia coli APEC O78 hypothetical protein YP_007383424.1 4409727 D 1274814 CDS YP_007383425.1 443619569 14484227 complement(4410299..4410946) 1 NC_020163.1 COG1285 Uncharacterized membrane protein; putative Mg(2+) transport ATPase 4410946 14484227 APECO78_21320 Escherichia coli APEC O78 putative Mg(2+) transport ATPase YP_007383425.1 4410299 R 1274814 CDS YP_007383426.1 443619570 14484228 complement(4411010..4411348) 1 NC_020163.1 acid-resistance protein 4411348 hdeB 14484228 hdeB Escherichia coli APEC O78 acid-resistance protein YP_007383426.1 4411010 R 1274814 CDS YP_007383427.1 443619571 14484229 complement(4411452..4411784) 1 NC_020163.1 acid-resistance protein 4411784 14484229 APECO78_21330 Escherichia coli APEC O78 acid-resistance protein YP_007383427.1 4411452 R 1274814 CDS YP_007383428.1 443619572 14484230 4412039..4412611 1 NC_020163.1 COG3247 Uncharacterized conserved protein; acid-resistance membrane protein 4412611 14484230 APECO78_21335 Escherichia coli APEC O78 acid-resistance membrane protein YP_007383428.1 4412039 D 1274814 CDS YP_007383429.1 443619573 14484231 4413410..4413937 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator 4413937 14484231 APECO78_21340 Escherichia coli APEC O78 DNA-binding transcriptional activator YP_007383429.1 4413410 D 1274814 CDS YP_007383430.1 443619574 14484232 complement(4413938..4414216) 1 NC_020163.1 hypothetical protein 4414216 14484232 APECO78_21345 Escherichia coli APEC O78 hypothetical protein YP_007383430.1 4413938 R 1274814 CDS YP_007383431.1 443619575 14484233 complement(4414254..4414370) 1 NC_020163.1 hypothetical protein 4414370 14484233 APECO78_21350 Escherichia coli APEC O78 hypothetical protein YP_007383431.1 4414254 R 1274814 CDS YP_007383432.1 443619576 14484234 4414276..4415433 1 NC_020163.1 COG0845 Membrane-fusion protein; multidrug efflux system protein MdtE 4415433 14484234 APECO78_21355 Escherichia coli APEC O78 multidrug efflux system protein MdtE YP_007383432.1 4414276 D 1274814 CDS YP_007383433.1 443619577 14484235 4415458..4418571 1 NC_020163.1 COG0841 Cation/multidrug efflux pump; multidrug transporter MdtF, RpoS-dependent 4418571 14484235 APECO78_21360 Escherichia coli APEC O78 multidrug transporter MdtF, RpoS-dependent YP_007383433.1 4415458 D 1274814 CDS YP_007383434.1 443619578 14484236 complement(4418934..4419662) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional activator GadW 4419662 14484236 APECO78_21365 Escherichia coli APEC O78 DNA-binding transcriptional activator GadW YP_007383434.1 4418934 R 1274814 CDS YP_007383435.1 443619579 14484237 complement(4420030..4420854) 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; DNA-binding transcriptional regulator GadX 4420854 14484237 APECO78_21370 Escherichia coli APEC O78 DNA-binding transcriptional regulator GadX YP_007383435.1 4420030 R 1274814 CDS YP_007383436.1 443619580 14484238 complement(4421224..4422624) 1 NC_020163.1 COG0076 Glutamate decarboxylase and related PLP-dependent proteins; glutamate decarboxylase 4422624 14484238 APECO78_21375 Escherichia coli APEC O78 glutamate decarboxylase YP_007383436.1 4421224 R 1274814 CDS YP_007383437.1 443619581 14484239 complement(4422835..4424232) 1 NC_020163.1 COG1858 Cytochrome c peroxidase; cytochrome C peroxidase 4424232 14484239 APECO78_21380 Escherichia coli APEC O78 cytochrome C peroxidase YP_007383437.1 4422835 R 1274814 CDS YP_007383438.1 443619582 14484240 4424637..4426286 1 NC_020163.1 COG1626 Neutral trehalase; cytoplasmic trehalase 4426286 14484240 APECO78_21385 Escherichia coli APEC O78 cytoplasmic trehalase YP_007383438.1 4424637 D 1274814 CDS YP_007383439.1 443619583 14484241 complement(4426337..4426939) 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; HTH-type transcriptional regulator yhjB 4426939 14484241 APECO78_21390 Escherichia coli APEC O78 HTH-type transcriptional regulator yhjB YP_007383439.1 4426337 R 1274814 CDS YP_007383440.1 443619584 14484242 4427387..4428358 1 NC_020163.1 COG0583 Transcriptional regulator; LysR family transcriptional regulator 4428358 14484242 APECO78_21395 Escherichia coli APEC O78 LysR family transcriptional regulator YP_007383440.1 4427387 D 1274814 CDS YP_007383441.1 443619585 14484243 4428407..4429420 1 NC_020163.1 COG1295 Predicted membrane protein; ribonuclease 4429420 14484243 APECO78_21400 Escherichia coli APEC O78 ribonuclease YP_007383441.1 4428407 D 1274814 CDS YP_007383442.1 443619586 14484244 4429831..4431153 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; putative transporter 4431153 14484244 APECO78_21405 Escherichia coli APEC O78 putative transporter YP_007383442.1 4429831 D 1274814 CDS YP_007383443.1 443619587 14484245 complement(4431387..4433447) 1 NC_020163.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis; outer membrane biogenesis protein 4433447 14484245 APECO78_21410 Escherichia coli APEC O78 outer membrane biogenesis protein YP_007383443.1 4431387 R 1274814 CDS YP_007383444.1 443619588 14484246 complement(4433517..4434284) 1 NC_020163.1 COG2200 FOG: EAL domain; cyclic-di-GMP phosphodiesterase 4434284 14484246 APECO78_21415 Escherichia coli APEC O78 cyclic-di-GMP phosphodiesterase YP_007383444.1 4433517 R 1274814 CDS YP_007383445.1 443619589 14484247 4434516..4435445 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; ketodeoxygluconokinase KdgK 4435445 14484247 APECO78_21420 Escherichia coli APEC O78 ketodeoxygluconokinase KdgK YP_007383445.1 4434516 D 1274814 CDS YP_007383446.1 443619590 14484248 complement(4435541..4437037) 1 NC_020163.1 COG0612 Predicted Zn-dependent peptidases; hypothetical protein 4437037 14484248 APECO78_21425 Escherichia coli APEC O78 hypothetical protein YP_007383446.1 4435541 R 1274814 CDS YP_007383447.1 443619591 14484249 complement(4437258..4438544) 1 NC_020163.1 COG1301 Na+/H+-dicarboxylate symporters; C4-dicarboxylate transporter DctA 4438544 14484249 APECO78_21430 Escherichia coli APEC O78 C4-dicarboxylate transporter DctA YP_007383447.1 4437258 R 1274814 CDS YP_007383448.1 443619592 14484250 complement(4438727..4440682) 1 NC_020163.1 COG2199 FOG: GGDEF domain; diguanylate cyclase 4440682 14484250 APECO78_21435 Escherichia coli APEC O78 diguanylate cyclase YP_007383448.1 4438727 R 1274814 CDS YP_007383449.1 443619593 14484251 complement(4440797..4444270) 1 NC_020163.1 COG0457 FOG: TPR repeat; Cellulose synthase operon C domain protein precursor 4444270 14484251 APECO78_21440 Escherichia coli APEC O78 Cellulose synthase operon C domain protein precursor YP_007383449.1 4440797 R 1274814 CDS YP_007383450.1 443619594 14484252 complement(4444252..4445358) 1 NC_020163.1 COG3405 Endoglucanase Y; endo-1,4-D-glucanase 4445358 14484252 APECO78_21445 Escherichia coli APEC O78 endo-1,4-D-glucanase YP_007383450.1 4444252 R 1274814 CDS YP_007383451.1 443619595 14484253 complement(4445365..4447704) 1 NC_020163.1 cellulose synthase regulator protein 4447704 14484253 APECO78_21450 Escherichia coli APEC O78 cellulose synthase regulator protein YP_007383451.1 4445365 R 1274814 CDS YP_007383452.1 443619596 14484254 complement(4447715..4450333) 1 NC_020163.1 COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; cellulose synthase catalytic subunit 4450333 bcsA 14484254 bcsA Escherichia coli APEC O78 cellulose synthase catalytic subunit YP_007383452.1 4447715 R 1274814 CDS YP_007383453.1 443619597 14484255 complement(4450330..4451082) 1 NC_020163.1 COG1192 ATPases involved in chromosome partitioning; cell division protein 4451082 14484255 APECO78_21460 Escherichia coli APEC O78 cell division protein YP_007383453.1 4450330 R 1274814 CDS YP_007383454.1 443619598 14484256 complement(4451094..4451282) 1 NC_020163.1 hypothetical protein 4451282 14484256 APECO78_21465 Escherichia coli APEC O78 hypothetical protein YP_007383454.1 4451094 R 1274814 CDS YP_007383455.1 443619599 14484257 4451555..4453126 1 NC_020163.1 hypothetical protein 4453126 14484257 APECO78_21470 Escherichia coli APEC O78 hypothetical protein YP_007383455.1 4451555 D 1274814 CDS YP_007383456.1 443619600 14484258 4453123..4453314 1 NC_020163.1 hypothetical protein 4453314 14484258 APECO78_21475 Escherichia coli APEC O78 hypothetical protein YP_007383456.1 4453123 D 1274814 CDS YP_007383457.1 443619601 14484259 4453311..4454990 1 NC_020163.1 hypothetical protein 4454990 14484259 APECO78_21480 Escherichia coli APEC O78 hypothetical protein YP_007383457.1 4453311 D 1274814 CDS YP_007383458.1 443619602 14484260 complement(4455077..4455184) 1 NC_020163.1 hypothetical protein 4455184 14484260 APECO78_21485 Escherichia coli APEC O78 hypothetical protein YP_007383458.1 4455077 R 1274814 CDS YP_007383459.1 443619603 14484261 complement(4455560..4455667) 1 NC_020163.1 hypothetical protein 4455667 14484261 APECO78_21490 Escherichia coli APEC O78 hypothetical protein YP_007383459.1 4455560 R 1274814 CDS YP_007383460.1 443619604 14484262 complement(4456043..4456150) 1 NC_020163.1 hypothetical protein 4456150 14484262 APECO78_21495 Escherichia coli APEC O78 hypothetical protein YP_007383460.1 4456043 R 1274814 CDS YP_007383461.1 443619605 14484263 complement(4456526..4456633) 1 NC_020163.1 hypothetical protein 4456633 14484263 APECO78_21500 Escherichia coli APEC O78 hypothetical protein YP_007383461.1 4456526 R 1274814 CDS YP_007383462.1 443619606 14484264 4457109..4458380 1 NC_020163.1 COG0814 Amino acid permeases; putative transporter 4458380 14484264 APECO78_21505 Escherichia coli APEC O78 putative transporter YP_007383462.1 4457109 D 1274814 CDS YP_007383463.1 443619607 14484265 complement(4458410..4459414) 1 NC_020163.1 COG4608 ABC-type oligopeptide transport system, ATPase component; dipeptide transporter ATP-binding subunit 4459414 dppF 14484265 dppF Escherichia coli APEC O78 dipeptide transporter ATP-binding subunit YP_007383463.1 4458410 R 1274814 CDS YP_007383464.1 443619608 14484266 complement(4459411..4460394) 1 NC_020163.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; dipeptide transporter ATP-binding subunit 4460394 14484266 APECO78_21515 Escherichia coli APEC O78 dipeptide transporter ATP-binding subunit YP_007383464.1 4459411 R 1274814 CDS YP_007383465.1 443619609 14484267 complement(4460405..4461307) 1 NC_020163.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transporter 4461307 14484267 APECO78_21520 Escherichia coli APEC O78 dipeptide transporter YP_007383465.1 4460405 R 1274814 CDS YP_007383466.1 443619610 14484268 complement(4461317..4462336) 1 NC_020163.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transporter permease DppB 4462336 14484268 APECO78_21525 Escherichia coli APEC O78 dipeptide transporter permease DppB YP_007383466.1 4461317 R 1274814 CDS YP_007383467.1 443619611 14484269 4462507..4462581 1 NC_020163.1 hypothetical protein 4462581 14484269 APECO78_21530 Escherichia coli APEC O78 hypothetical protein YP_007383467.1 4462507 D 1274814 CDS YP_007383468.1 443619612 14484270 complement(4462644..4464251) 1 NC_020163.1 COG0747 ABC-type dipeptide transport system, periplasmic component; dipeptide transport protein 4464251 14484270 APECO78_21535 Escherichia coli APEC O78 dipeptide transport protein YP_007383468.1 4462644 R 1274814 CDS YP_007383469.1 443619613 14484656 complement(4465333..4467024) 1 NC_020163.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; phosphoethanolamine transferase 4467024 14484656 APECO78_21540 Escherichia coli APEC O78 phosphoethanolamine transferase YP_007383469.1 4465333 R 1274814 CDS YP_007383470.1 443619614 14484272 complement(4467348..4468556) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; oxalate/formate antiporter protein 4468556 14484272 APECO78_21545 Escherichia coli APEC O78 oxalate/formate antiporter protein YP_007383470.1 4467348 R 1274814 CDS YP_007383471.1 443619615 14484273 complement(4468785..4469483) 1 NC_020163.1 putative lipase 4469483 14484273 APECO78_21550 Escherichia coli APEC O78 putative lipase YP_007383471.1 4468785 R 1274814 CDS YP_007383472.1 443619616 14484274 4469641..4470204 1 NC_020163.1 COG2818 3-methyladenine DNA glycosylase; 3-methyl-adenine DNA glycosylase I 4470204 14484274 APECO78_21555 Escherichia coli APEC O78 3-methyl-adenine DNA glycosylase I YP_007383472.1 4469641 D 1274814 CDS YP_007383473.1 443619617 14484275 4470201..4470641 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 4470641 14484275 APECO78_21560 Escherichia coli APEC O78 acetyltransferase YP_007383473.1 4470201 D 1274814 CDS YP_007383474.1 443619618 14484276 complement(4470610..4472943) 1 NC_020163.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; biotin sulfoxide reductase 4472943 bisC 14484276 bisC Escherichia coli APEC O78 biotin sulfoxide reductase YP_007383474.1 4470610 R 1274814 CDS YP_007383475.1 443619619 14484277 4473096..4473755 1 NC_020163.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; outer membrane lipoprotein 4473755 14484277 APECO78_21570 Escherichia coli APEC O78 outer membrane lipoprotein YP_007383475.1 4473096 D 1274814 CDS YP_007383476.1 443619620 14484278 4473859..4474833 1 NC_020163.1 COG1052 Lactate dehydrogenase and related dehydrogenases; 2-ketoaldonate reductase/glyoxylate reductase B 4474833 14484278 APECO78_21575 Escherichia coli APEC O78 2-ketoaldonate reductase/glyoxylate reductase B YP_007383476.1 4473859 D 1274814 CDS YP_007383477.1 443619621 14484279 complement(4474883..4475593) 1 NC_020163.1 hypothetical protein 4475593 14484279 APECO78_21580 Escherichia coli APEC O78 hypothetical protein YP_007383477.1 4474883 R 1274814 CDS YP_007383478.1 443619622 14484280 4476027..4476317 1 NC_020163.1 COG2944 Predicted transcriptional regulator; transcriptional regulator 4476317 14484280 APECO78_21585 Escherichia coli APEC O78 transcriptional regulator YP_007383478.1 4476027 D 1274814 CDS YP_007383479.1 443619623 14484281 4476598..4476810 1 NC_020163.1 COG1278 Cold shock proteins; RNA chaperone/anti-terminator 4476810 14484281 APECO78_21590 Escherichia coli APEC O78 RNA chaperone/anti-terminator YP_007383479.1 4476598 D 1274814 CDS YP_007383480.1 443619624 14484282 complement(4476998..4477210) 1 NC_020163.1 small toxic polypeptide 4477210 14484282 APECO78_21595 Escherichia coli APEC O78 small toxic polypeptide YP_007383480.1 4476998 R 1274814 CDS YP_007383481.1 443619625 14484283 complement(4477476..4479545) 1 NC_020163.1 COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA ligase subunit beta 4479545 glyS 14484283 glyS Escherichia coli APEC O78 glycyl-tRNA ligase subunit beta YP_007383481.1 4477476 R 1274814 CDS YP_007383482.1 443619626 14484284 complement(4479555..4480466) 1 NC_020163.1 COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase subunit alpha 4480466 14484284 APECO78_21605 Escherichia coli APEC O78 glycyl-tRNA synthetase subunit alpha YP_007383482.1 4479555 R 1274814 CDS YP_007383483.1 443619627 14484285 complement(4480561..4480860) 1 NC_020163.1 outer membrane lipoprotein 4480860 14484285 APECO78_21610 Escherichia coli APEC O78 outer membrane lipoprotein YP_007383483.1 4480561 R 1274814 CDS YP_007383484.1 443619628 14484286 4481035..4482030 1 NC_020163.1 COG3274 Uncharacterized protein conserved in bacteria; O-acetyltransferase 4482030 14484286 APECO78_21615 Escherichia coli APEC O78 O-acetyltransferase YP_007383484.1 4481035 D 1274814 CDS YP_007383485.1 443619629 14484287 complement(4482072..4482509) 1 NC_020163.1 COG4682 Predicted membrane protein; Inner membrane protein yiaA 4482509 14484287 APECO78_21620 Escherichia coli APEC O78 Inner membrane protein yiaA YP_007383485.1 4482072 R 1274814 CDS YP_007383486.1 443619630 14484288 complement(4482555..4482896) 1 NC_020163.1 COG4682 Predicted membrane protein; hypothetical protein 4482896 14484288 APECO78_21625 Escherichia coli APEC O78 hypothetical protein YP_007383486.1 4482555 R 1274814 CDS YP_007383487.1 443619631 14484289 complement(4483065..4484519) 1 NC_020163.1 COG1070 Sugar (pentulose and hexulose) kinases; xylulokinase 4484519 14484289 APECO78_21630 Escherichia coli APEC O78 xylulokinase YP_007383487.1 4483065 R 1274814 CDS YP_007383488.1 443619632 14484290 complement(4484591..4485913) 1 NC_020163.1 COG2115 Xylose isomerase; xylose isomerase 4485913 14484290 APECO78_21635 Escherichia coli APEC O78 xylose isomerase YP_007383488.1 4484591 R 1274814 CDS YP_007383489.1 443619633 14484291 4486279..4487271 1 NC_020163.1 COG4213 ABC-type xylose transport system, periplasmic component; D-xylose transporter subunit XylF 4487271 xylF 14484291 xylF Escherichia coli APEC O78 D-xylose transporter subunit XylF YP_007383489.1 4486279 D 1274814 CDS YP_007383490.1 443619634 14484292 4487349..4488890 1 NC_020163.1 COG1129 ABC-type sugar transport system, ATPase component; xylose transporter ATP-binding subunit 4488890 14484292 APECO78_21645 Escherichia coli APEC O78 xylose transporter ATP-binding subunit YP_007383490.1 4487349 D 1274814 CDS YP_007383491.1 443619635 14484293 4488868..4490049 1 NC_020163.1 COG4214 ABC-type xylose transport system, permease component; putative membrane component of xylose transport system 4490049 14484293 APECO78_21650 Escherichia coli APEC O78 putative membrane component of xylose transport system YP_007383491.1 4488868 D 1274814 CDS YP_007383492.1 443619636 14484294 4490127..4491305 1 NC_020163.1 COG1609 Transcriptional regulators; putative xyl operon regulator 4491305 14484294 APECO78_21655 Escherichia coli APEC O78 putative xyl operon regulator YP_007383492.1 4490127 D 1274814 CDS YP_007383493.1 443619637 14484295 complement(4491413..4492237) 1 NC_020163.1 COG2992 Uncharacterized FlgJ-related protein; hypothetical protein 4492237 14484295 APECO78_21660 Escherichia coli APEC O78 hypothetical protein YP_007383493.1 4491413 R 1274814 CDS YP_007383494.1 443619638 14484296 4492557..4494587 1 NC_020163.1 COG0366 Glycosidases; alpha-amylase 4494587 malS 14484296 malS Escherichia coli APEC O78 alpha-amylase YP_007383494.1 4492557 D 1274814 CDS YP_007383495.1 443619639 14484297 4494765..4496018 1 NC_020163.1 COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase; valine--pyruvate transaminase 4496018 avtA 14484297 avtA Escherichia coli APEC O78 valine--pyruvate transaminase YP_007383495.1 4494765 D 1274814 CDS YP_007383496.1 443619640 14484298 4496022..4496150 1 NC_020163.1 hypothetical protein 4496150 14484298 APECO78_21675 Escherichia coli APEC O78 hypothetical protein YP_007383496.1 4496022 D 1274814 CDS YP_007383497.1 443619641 14484299 complement(4496169..4496642) 1 NC_020163.1 COG1142 Fe-S-cluster-containing hydrogenase components 2; hydrogenase, 4Fe-4S ferredoxin-type component 4496642 14484299 APECO78_21680 Escherichia coli APEC O78 hydrogenase, 4Fe-4S ferredoxin-type component YP_007383497.1 4496169 R 1274814 CDS YP_007383498.1 443619642 14484300 complement(4496744..4497592) 1 NC_020163.1 COG1414 Transcriptional regulator; DNA-binding transcriptional repressor 4497592 14484300 APECO78_21685 Escherichia coli APEC O78 DNA-binding transcriptional repressor YP_007383498.1 4496744 R 1274814 CDS YP_007383499.1 443619643 14484301 4497793..4498791 1 NC_020163.1 COG2055 Malate/L-lactate dehydrogenases; 2,3-diketo-L-gulonate reductase 4498791 14484301 APECO78_21690 Escherichia coli APEC O78 2,3-diketo-L-gulonate reductase YP_007383499.1 4497793 D 1274814 CDS YP_007383500.1 443619644 14484302 4498803..4499270 1 NC_020163.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 4499270 14484302 APECO78_21695 Escherichia coli APEC O78 hypothetical protein YP_007383500.1 4498803 D 1274814 CDS YP_007383501.1 443619645 14484303 4499388..4499861 1 NC_020163.1 COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; 2,3-diketo-L-gulonate TRAP transporter small permease 4499861 14484303 APECO78_21700 Escherichia coli APEC O78 2,3-diketo-L-gulonate TRAP transporter small permease YP_007383501.1 4499388 D 1274814 CDS YP_007383502.1 443619646 14484304 4499864..4501141 1 NC_020163.1 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component; L-dehydroascorbate transporter large permease subunit 4501141 14484304 APECO78_21705 Escherichia coli APEC O78 L-dehydroascorbate transporter large permease subunit YP_007383502.1 4499864 D 1274814 CDS YP_007383503.1 443619647 14484305 4501154..4502140 1 NC_020163.1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component; TRAP family 2,3-diketo-L-gulonate transporter periplasmic 2,3-diketo-L-gulonate-binding protein 4502140 14484305 APECO78_21710 Escherichia coli APEC O78 TRAP family 2,3-diketo-L-gulonate transporter periplasmic 2,3-diketo-L-gulonate-binding protein YP_007383503.1 4501154 D 1274814 CDS YP_007383504.1 443619648 14484306 4502144..4503640 1 NC_020163.1 COG1070 Sugar (pentulose and hexulose) kinases; L-xylulose/3-keto-L-gulonate kinase 4503640 14484306 APECO78_21715 Escherichia coli APEC O78 L-xylulose/3-keto-L-gulonate kinase YP_007383504.1 4502144 D 1274814 CDS YP_007383505.1 443619649 14484307 4503637..4504299 1 NC_020163.1 COG0269 3-hexulose-6-phosphate synthase and related proteins; 3-keto-L-gulonate-6-phosphate decarboxylase 4504299 sgbH 14484307 sgbH Escherichia coli APEC O78 3-keto-L-gulonate-6-phosphate decarboxylase YP_007383505.1 4503637 D 1274814 CDS YP_007383506.1 443619650 14484308 4504292..4505152 1 NC_020163.1 COG3623 Putative L-xylulose-5-phosphate 3-epimerase; L-xylulose 5-phosphate 3-epimerase 4505152 14484308 APECO78_21725 Escherichia coli APEC O78 L-xylulose 5-phosphate 3-epimerase YP_007383506.1 4504292 D 1274814 CDS YP_007383507.1 443619651 14484309 4505146..4505841 1 NC_020163.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; L-ribulose-5-phosphate 4-epimerase 4505841 14484309 APECO78_21730 Escherichia coli APEC O78 L-ribulose-5-phosphate 4-epimerase YP_007383507.1 4505146 D 1274814 CDS YP_007383508.1 443619652 14484310 complement(4506008..4506148) 1 NC_020163.1 hypothetical protein 4506148 14484310 APECO78_21735 Escherichia coli APEC O78 hypothetical protein YP_007383508.1 4506008 R 1274814 CDS YP_007383509.1 443619653 14484311 complement(4506188..4506928) 1 NC_020163.1 COG3713 Outer membrane protein V; outer membrane protein 4506928 14484311 APECO78_21740 Escherichia coli APEC O78 outer membrane protein YP_007383509.1 4506188 R 1274814 CDS YP_007383510.1 443619654 14484312 4507052..4508026 1 NC_020163.1 COG0583 Transcriptional regulator; putative DNA-binding transcriptional regulator 4508026 14484312 APECO78_21745 Escherichia coli APEC O78 putative DNA-binding transcriptional regulator YP_007383510.1 4507052 D 1274814 CDS YP_007383511.1 443619655 14484313 complement(4508023..4509159) 1 NC_020163.1 COG1566 Multidrug resistance efflux pump; membrane fusion protein (MFP) component of efflux pump, signal anchor 4509159 14484313 APECO78_21750 Escherichia coli APEC O78 membrane fusion protein (MFP) component of efflux pump, signal anchor YP_007383511.1 4508023 R 1274814 CDS YP_007383512.1 443619656 14484314 complement(4509165..4509488) 1 NC_020163.1 hypothetical protein 4509488 14484314 APECO78_21755 Escherichia coli APEC O78 hypothetical protein YP_007383512.1 4509165 R 1274814 CDS YP_007383513.1 443619657 14484315 complement(4510033..4511571) 1 NC_020163.1 COG1012 NAD-dependent aldehyde dehydrogenases; aldehyde dehydrogenase B 4511571 14484315 APECO78_21760 Escherichia coli APEC O78 aldehyde dehydrogenase B YP_007383513.1 4510033 R 1274814 CDS YP_007383514.1 443619658 14484316 complement(4511736..4512887) 1 NC_020163.1 COG1454 Alcohol dehydrogenase, class IV; alcohol dehydrogenase 4512887 14484316 APECO78_21765 Escherichia coli APEC O78 alcohol dehydrogenase YP_007383514.1 4511736 R 1274814 CDS YP_007383515.1 443619659 14484317 complement(4513077..4514921) 1 NC_020163.1 COG3276 Selenocysteine-specific translation elongation factor; selenocysteinyl-tRNA-specific translation factor 4514921 14484317 APECO78_21770 Escherichia coli APEC O78 selenocysteinyl-tRNA-specific translation factor YP_007383515.1 4513077 R 1274814 CDS YP_007383516.1 443619660 14484318 complement(4514918..4516309) 1 NC_020163.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase 4516309 14484318 APECO78_21775 Escherichia coli APEC O78 selenocysteine synthase YP_007383516.1 4514918 R 1274814 CDS YP_007383517.1 443619661 14484319 complement(4516407..4517015) 1 NC_020163.1 COG0625 Glutathione S-transferase; glutathione S-transferase 4517015 14484319 APECO78_21780 Escherichia coli APEC O78 glutathione S-transferase YP_007383517.1 4516407 R 1274814 CDS YP_007383518.1 443619662 14484320 4517244..4517576 1 NC_020163.1 COG3209 Rhs family protein; rhsA element core protein RshA 4517576 14484320 APECO78_21785 Escherichia coli APEC O78 rhsA element core protein RshA YP_007383518.1 4517244 D 1274814 CDS YP_007383519.1 443619663 14484321 4517534..4521376 1 NC_020163.1 COG3209 Rhs family protein; rhsA element core protein RshA 4521376 14484321 APECO78_21790 Escherichia coli APEC O78 rhsA element core protein RshA YP_007383519.1 4517534 D 1274814 CDS YP_007383520.1 443619664 14484322 4521397..4522140 1 NC_020163.1 COG1413 FOG: HEAT repeat; lyase 4522140 14484322 APECO78_21795 Escherichia coli APEC O78 lyase YP_007383520.1 4521397 D 1274814 CDS YP_007383521.1 443619665 14484323 4522280..4523224 1 NC_020163.1 COG3209 Rhs family protein; Rhs family protein 4523224 14484323 APECO78_21800 Escherichia coli APEC O78 Rhs family protein YP_007383521.1 4522280 D 1274814 CDS YP_007383522.1 443619666 14484324 4523236..4523697 1 NC_020163.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 4523697 14484324 APECO78_21805 Escherichia coli APEC O78 hypothetical protein YP_007383522.1 4523236 D 1274814 CDS YP_007383523.1 443619667 14484325 4524404..4524841 1 NC_020163.1 hypothetical protein 4524841 14484325 APECO78_21810 Escherichia coli APEC O78 hypothetical protein YP_007383523.1 4524404 D 1274814 CDS YP_007383524.1 443619668 14484326 complement(4525301..4526437) 1 NC_020163.1 COG1566 Multidrug resistance efflux pump; hypothetical protein 4526437 14484326 APECO78_21815 Escherichia coli APEC O78 hypothetical protein YP_007383524.1 4525301 R 1274814 CDS YP_007383525.1 443619669 14484327 complement(4526440..4526802) 1 NC_020163.1 hypothetical protein 4526802 14484327 APECO78_21820 Escherichia coli APEC O78 hypothetical protein YP_007383525.1 4526440 R 1274814 CDS YP_007383526.1 443619670 14484328 4527339..4529252 1 NC_020163.1 COG2213 Phosphotransferase system, mannitol-specific IIBC component; PTS system mannitol-specific transporter subunit IICBA 4529252 14484328 APECO78_21825 Escherichia coli APEC O78 PTS system mannitol-specific transporter subunit IICBA YP_007383526.1 4527339 D 1274814 CDS YP_007383527.1 443619671 14484329 4529482..4530630 1 NC_020163.1 COG0246 Mannitol-1-phosphate/altronate dehydrogenases; mannitol-1-phosphate 5-dehydrogenase 4530630 14484329 APECO78_21830 Escherichia coli APEC O78 mannitol-1-phosphate 5-dehydrogenase YP_007383527.1 4529482 D 1274814 CDS YP_007383528.1 443619672 14484330 4530630..4531217 1 NC_020163.1 COG3722 Transcriptional regulator; mannitol repressor protein 4531217 mtlR 14484330 mtlR Escherichia coli APEC O78 mannitol repressor protein YP_007383528.1 4530630 D 1274814 CDS YP_007383529.1 443619673 14484331 complement(4531229..4531438) 1 NC_020163.1 hypothetical protein 4531438 14484331 APECO78_21840 Escherichia coli APEC O78 hypothetical protein YP_007383529.1 4531229 R 1274814 CDS YP_007383530.1 443619674 14484332 4531723..4532085 1 NC_020163.1 hypothetical protein 4532085 14484332 APECO78_21845 Escherichia coli APEC O78 hypothetical protein YP_007383530.1 4531723 D 1274814 CDS YP_007383531.1 443619675 14484333 4532628..4533311 1 NC_020163.1 hypothetical protein 4533311 14484333 APECO78_21850 Escherichia coli APEC O78 hypothetical protein YP_007383531.1 4532628 D 1274814 CDS YP_007383532.1 443619676 14484334 4533355..4538205 1 NC_020163.1 COG5295 Autotransporter adhesin; adhesin 4538205 14484334 APECO78_21855 Escherichia coli APEC O78 adhesin YP_007383532.1 4533355 D 1274814 CDS YP_007383533.1 443619677 14484335 4538573..4540228 1 NC_020163.1 COG1620 L-lactate permease; L-lactate permease 4540228 14484335 APECO78_21860 Escherichia coli APEC O78 L-lactate permease YP_007383533.1 4538573 D 1274814 CDS YP_007383534.1 443619678 14484336 4540228..4541004 1 NC_020163.1 COG2186 Transcriptional regulators; putative L-lactate dehydrogenase operon regulatory protein 4541004 14484336 APECO78_21865 Escherichia coli APEC O78 putative L-lactate dehydrogenase operon regulatory protein YP_007383534.1 4540228 D 1274814 CDS YP_007383535.1 443619679 14484337 4541001..4542191 1 NC_020163.1 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases; L-lactate dehydrogenase 4542191 lldD 14484337 lldD Escherichia coli APEC O78 L-lactate dehydrogenase YP_007383535.1 4541001 D 1274814 CDS YP_007383536.1 443619680 14484338 4542377..4542850 1 NC_020163.1 COG0219 Predicted rRNA methylase (SpoU class); rRNA methylase 4542850 14484338 APECO78_21875 Escherichia coli APEC O78 rRNA methylase YP_007383536.1 4542377 D 1274814 CDS YP_007383537.1 443619681 14484339 complement(4542903..4543724) 1 NC_020163.1 COG1045 Serine acetyltransferase; serine acetyltransferase 4543724 14484339 APECO78_21880 Escherichia coli APEC O78 serine acetyltransferase YP_007383537.1 4542903 R 1274814 CDS YP_007383538.1 443619682 14484340 complement(4543804..4544823) 1 NC_020163.1 COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4544823 14484340 APECO78_21885 Escherichia coli APEC O78 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_007383538.1 4543804 R 1274814 CDS YP_007383539.1 443619683 14484341 complement(4544823..4545290) 1 NC_020163.1 COG1952 Preprotein translocase subunit SecB; preprotein translocase subunit SecB 4545290 14484341 APECO78_21890 Escherichia coli APEC O78 preprotein translocase subunit SecB YP_007383539.1 4544823 R 1274814 CDS YP_007383540.1 443619684 14484342 complement(4545353..4545604) 1 NC_020163.1 COG0695 Glutaredoxin and related proteins; glutaredoxin 3 4545604 14484342 APECO78_21895 Escherichia coli APEC O78 glutaredoxin 3 YP_007383540.1 4545353 R 1274814 CDS YP_007383541.1 443619685 14484343 complement(4545746..4546177) 1 NC_020163.1 COG0607 Rhodanese-related sulfurtransferase; hypothetical protein 4546177 14484343 APECO78_21900 Escherichia coli APEC O78 hypothetical protein YP_007383541.1 4545746 R 1274814 CDS YP_007383542.1 443619686 14484344 4546422..4547966 1 NC_020163.1 COG0696 Phosphoglyceromutase; phosphoglycerate mutase 4547966 14484344 APECO78_21905 Escherichia coli APEC O78 phosphoglycerate mutase YP_007383542.1 4546422 D 1274814 CDS YP_007383543.1 443619687 14484345 4547976..4549259 1 NC_020163.1 COG4942 Membrane-bound metallopeptidase; AmiB activator 4549259 14484345 APECO78_21910 Escherichia coli APEC O78 AmiB activator YP_007383543.1 4547976 D 1274814 CDS YP_007383544.1 443619688 14484346 4549263..4550222 1 NC_020163.1 COG2861 Uncharacterized protein conserved in bacteria; hypothetical protein 4550222 14484346 APECO78_21915 Escherichia coli APEC O78 hypothetical protein YP_007383544.1 4549263 D 1274814 CDS YP_007383545.1 443619689 14484347 complement(4550209..4551243) 1 NC_020163.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase 4551243 14484347 APECO78_21920 Escherichia coli APEC O78 glycosyl transferase YP_007383545.1 4550209 R 1274814 CDS YP_007383546.1 443619690 14484348 complement(4551482..4552507) 1 NC_020163.1 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; L-threonine 3-dehydrogenase 4552507 14484348 APECO78_21925 Escherichia coli APEC O78 L-threonine 3-dehydrogenase YP_007383546.1 4551482 R 1274814 CDS YP_007383547.1 443619691 14484349 complement(4552517..4553713) 1 NC_020163.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 2-amino-3-ketobutyrate coenzyme A ligase 4553713 14484349 APECO78_21930 Escherichia coli APEC O78 2-amino-3-ketobutyrate coenzyme A ligase YP_007383547.1 4552517 R 1274814 CDS YP_007383548.1 443619692 14484350 4553927..4554859 1 NC_020163.1 COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-L-glycero-D-mannoheptose-6-epimerase 4554859 rfaD 14484350 rfaD Escherichia coli APEC O78 ADP-L-glycero-D-mannoheptose-6-epimerase YP_007383548.1 4553927 D 1274814 CDS YP_007383549.1 443619693 14484351 4554869..4555915 1 NC_020163.1 COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose:LPS heptosyltransferase II 4555915 14484351 APECO78_21940 Escherichia coli APEC O78 ADP-heptose:LPS heptosyltransferase II YP_007383549.1 4554869 D 1274814 CDS YP_007383550.1 443619694 14484352 4555919..4556890 1 NC_020163.1 COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose:LPS heptosyl transferase I 4556890 14484352 APECO78_21945 Escherichia coli APEC O78 ADP-heptose:LPS heptosyl transferase I YP_007383550.1 4555919 D 1274814 CDS YP_007383551.1 443619695 14484353 complement(4556960..4558213) 1 NC_020163.1 COG3307 Lipid A core - O-antigen ligase and related enzymes; O-antigen ligase 4558213 14484353 APECO78_21950 Escherichia coli APEC O78 O-antigen ligase YP_007383551.1 4556960 R 1274814 CDS YP_007383552.1 443619696 14484354 complement(4558259..4559242) 1 NC_020163.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; putative beta1,3-glucosyltransferase 4559242 14484354 APECO78_21955 Escherichia coli APEC O78 putative beta1,3-glucosyltransferase YP_007383552.1 4558259 R 1274814 CDS YP_007383553.1 443619697 14484355 complement(4559327..4560352) 1 NC_020163.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase 4560352 14484355 APECO78_21960 Escherichia coli APEC O78 UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase YP_007383553.1 4559327 R 1274814 CDS YP_007383554.1 443619698 14484356 complement(4560378..4561070) 1 NC_020163.1 COG0661 Predicted unusual protein kinase; lipopolysaccharide core biosynthesis protein 4561070 14484356 APECO78_21965 Escherichia coli APEC O78 lipopolysaccharide core biosynthesis protein YP_007383554.1 4560378 R 1274814 CDS YP_007383555.1 443619699 14484357 complement(4561080..4562075) 1 NC_020163.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide 1,2-glucosyltransferase 4562075 14484357 APECO78_21970 Escherichia coli APEC O78 lipopolysaccharide 1,2-glucosyltransferase YP_007383555.1 4561080 R 1274814 CDS YP_007383556.1 443619700 14484358 complement(4562092..4563108) 1 NC_020163.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1, 3-D-galactosyltransferase 4563108 14484358 APECO78_21975 Escherichia coli APEC O78 UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1, 3-D-galactosyltransferase YP_007383556.1 4562092 R 1274814 CDS YP_007383557.1 443619701 14484359 complement(4563124..4563921) 1 NC_020163.1 COG0515 Serine/threonine protein kinase; lipopolysaccharide core heptose(I) kinase RfaP 4563921 14484359 APECO78_21980 Escherichia coli APEC O78 lipopolysaccharide core heptose(I) kinase RfaP YP_007383557.1 4563124 R 1274814 CDS YP_007383558.1 443619702 14484360 complement(4563914..4565038) 1 NC_020163.1 COG0438 Glycosyltransferase; glucosyltransferase I RfaG 4565038 14484360 APECO78_21985 Escherichia coli APEC O78 glucosyltransferase I RfaG YP_007383558.1 4563914 R 1274814 CDS YP_007383559.1 443619703 14484361 complement(4565035..4566093) 1 NC_020163.1 COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide core heptosyltransferase RfaQ 4566093 14484361 APECO78_21990 Escherichia coli APEC O78 lipopolysaccharide core heptosyltransferase RfaQ YP_007383559.1 4565035 R 1274814 CDS YP_007383560.1 443619704 14484362 4566506..4567783 1 NC_020163.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase 4567783 14484362 APECO78_21995 Escherichia coli APEC O78 3-deoxy-D-manno-octulosonic-acid transferase YP_007383560.1 4566506 D 1274814 CDS YP_007383561.1 443619705 14484363 4567791..4568270 1 NC_020163.1 COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 4568270 14484363 APECO78_22000 Escherichia coli APEC O78 phosphopantetheine adenylyltransferase YP_007383561.1 4567791 D 1274814 CDS YP_007383562.1 443619706 14484364 complement(4568309..4569118) 1 NC_020163.1 COG0266 Formamidopyrimidine-DNA glycosylase; formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase 4569118 14484364 APECO78_22005 Escherichia coli APEC O78 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase YP_007383562.1 4568309 R 1274814 CDS YP_007383563.1 443619707 14484365 complement(4569216..4569383) 1 NC_020163.1 COG0267 Ribosomal protein L33; 50S ribosomal protein L33 4569383 14484365 APECO78_22010 Escherichia coli APEC O78 50S ribosomal protein L33 YP_007383563.1 4569216 R 1274814 CDS YP_007383564.1 443619708 14484366 complement(4569404..4569640) 1 NC_020163.1 COG0227 Ribosomal protein L28; 50S ribosomal protein L28 4569640 14484366 APECO78_22015 Escherichia coli APEC O78 50S ribosomal protein L28 YP_007383564.1 4569404 R 1274814 CDS YP_007383565.1 443619709 14484367 complement(4569857..4570525) 1 NC_020163.1 COG2003 DNA repair proteins; hypothetical protein 4570525 14484367 APECO78_22020 Escherichia coli APEC O78 hypothetical protein YP_007383565.1 4569857 R 1274814 CDS YP_007383566.1 443619710 14484368 4570697..4571917 1 NC_020163.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 4571917 14484368 APECO78_22025 Escherichia coli APEC O78 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_007383566.1 4570697 D 1274814 CDS YP_007383567.1 443619711 14484369 4571898..4572353 1 NC_020163.1 COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase 4572353 dut 14484369 dut Escherichia coli APEC O78 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_007383567.1 4571898 D 1274814 CDS YP_007383568.1 443619712 14484370 4572460..4573056 1 NC_020163.1 COG1309 Transcriptional regulator; division inhibitor protein 4573056 14484370 APECO78_22035 Escherichia coli APEC O78 division inhibitor protein YP_007383568.1 4572460 D 1274814 CDS YP_007383569.1 443619713 14484371 complement(4573102..4574061) 1 NC_020163.1 COG3344 Retron-type reverse transcriptase; putative RNA-directed DNA polymerase 4574061 14484371 APECO78_22040 Escherichia coli APEC O78 putative RNA-directed DNA polymerase YP_007383569.1 4573102 R 1274814 CDS YP_007383570.1 443619714 14484372 complement(4574359..4575000) 1 NC_020163.1 COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 4575000 14484372 APECO78_22045 Escherichia coli APEC O78 orotate phosphoribosyltransferase YP_007383570.1 4574359 R 1274814 CDS YP_007383571.1 443619715 14484373 complement(4575065..4575781) 1 NC_020163.1 COG0689 RNase PH; ribonuclease PH 4575781 14484373 APECO78_22050 Escherichia coli APEC O78 ribonuclease PH YP_007383571.1 4575065 R 1274814 CDS YP_007383572.1 443619716 14484374 4575908..4576771 1 NC_020163.1 COG1561 Uncharacterized stress-induced protein; hypothetical protein 4576771 14484374 APECO78_22055 Escherichia coli APEC O78 hypothetical protein YP_007383572.1 4575908 D 1274814 CDS YP_007383573.1 443619717 14484375 4576992..4577594 1 NC_020163.1 DNA-damage-inducible protein D 4577594 14484375 APECO78_22060 Escherichia coli APEC O78 DNA-damage-inducible protein D YP_007383573.1 4576992 D 1274814 CDS YP_007383574.1 443619718 14484376 4577885..4578502 1 NC_020163.1 COG2860 Predicted membrane protein; hypothetical protein 4578502 14484376 APECO78_22065 Escherichia coli APEC O78 hypothetical protein YP_007383574.1 4577885 D 1274814 CDS YP_007383575.1 443619719 14484377 complement(4578499..4580016) 1 NC_020163.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigB 4580016 14484377 APECO78_22070 Escherichia coli APEC O78 NAD-dependent DNA ligase LigB YP_007383575.1 4578499 R 1274814 CDS YP_007383576.1 443619720 14484378 complement(4580038..4580301) 1 NC_020163.1 hypothetical protein 4580301 14484378 APECO78_22075 Escherichia coli APEC O78 hypothetical protein YP_007383576.1 4580038 R 1274814 CDS YP_007383577.1 443619721 14484379 4580435..4581058 1 NC_020163.1 COG0194 Guanylate kinase; guanylate kinase 4581058 14484379 APECO78_22080 Escherichia coli APEC O78 guanylate kinase YP_007383577.1 4580435 D 1274814 CDS YP_007383578.1 443619722 14484380 4581113..4581388 1 NC_020163.1 COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega 4581388 14484380 APECO78_22085 Escherichia coli APEC O78 DNA-directed RNA polymerase subunit omega YP_007383578.1 4581113 D 1274814 CDS YP_007383579.1 443619723 14484381 4581407..4583515 1 NC_020163.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4583515 14484381 APECO78_22090 Escherichia coli APEC O78 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_007383579.1 4581407 D 1274814 CDS YP_007383580.1 443619724 14484382 4583522..4584211 1 NC_020163.1 COG0566 rRNA methylases; tRNA guanosine-2'-O-methyltransferase 4584211 14484382 APECO78_22095 Escherichia coli APEC O78 tRNA guanosine-2'-O-methyltransferase YP_007383580.1 4583522 D 1274814 CDS YP_007383581.1 443619725 14484383 4584217..4586298 1 NC_020163.1 COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG 4586298 14484383 APECO78_22100 Escherichia coli APEC O78 ATP-dependent DNA helicase RecG YP_007383581.1 4584217 D 1274814 CDS YP_007383582.1 443619726 14484384 complement(4586283..4587149) 1 NC_020163.1 hypothetical protein 4587149 14484384 APECO78_22105 Escherichia coli APEC O78 hypothetical protein YP_007383582.1 4586283 R 1274814 CDS YP_007383583.1 443619727 14484385 complement(4587152..4588357) 1 NC_020163.1 COG0786 Na+/glutamate symporter; sodium/glutamate symport carrier protein GltS 4588357 14484385 APECO78_22110 Escherichia coli APEC O78 sodium/glutamate symport carrier protein GltS YP_007383583.1 4587152 R 1274814 CDS YP_007383584.1 443619728 14484386 4588637..4590028 1 NC_020163.1 COG2233 Xanthine/uracil permeases; putative purine permease yicE 4590028 14484386 APECO78_22115 Escherichia coli APEC O78 putative purine permease yicE YP_007383584.1 4588637 D 1274814 CDS YP_007383585.1 443619729 14484387 4590149..4591858 1 NC_020163.1 hypothetical protein 4591858 14484387 APECO78_22120 Escherichia coli APEC O78 hypothetical protein YP_007383585.1 4590149 D 1274814 CDS YP_007383586.1 443619730 14484388 complement(4591910..4594228) 1 NC_020163.1 COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; alpha-glucosidase 4594228 14484388 APECO78_22125 Escherichia coli APEC O78 alpha-glucosidase YP_007383586.1 4591910 R 1274814 CDS YP_007383587.1 443619731 14484389 complement(4594238..4595620) 1 NC_020163.1 COG2211 Na+/melibiose symporter and related transporters; transporter 4595620 14484389 APECO78_22130 Escherichia coli APEC O78 transporter YP_007383587.1 4594238 R 1274814 CDS YP_007383588.1 443619732 14484657 4596116..4596256 1 NC_020163.1 COG3943 Virulence protein; hypothetical protein 4596256 14484657 APECO78_22135 Escherichia coli APEC O78 hypothetical protein YP_007383588.1 4596116 D 1274814 CDS YP_007383589.1 443619733 14484391 4596644..4597828 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; sugar efflux transporter C 4597828 14484391 APECO78_22140 Escherichia coli APEC O78 sugar efflux transporter C YP_007383589.1 4596644 D 1274814 CDS YP_007383590.1 443619734 14484392 4597939..4598862 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative transport protein YicL 4598862 14484392 APECO78_22145 Escherichia coli APEC O78 putative transport protein YicL YP_007383590.1 4597939 D 1274814 CDS YP_007383591.1 443619735 14484393 complement(4598866..4599684) 1 NC_020163.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; cytoplasmic membrane lipoprotein-28 4599684 14484393 APECO78_22150 Escherichia coli APEC O78 cytoplasmic membrane lipoprotein-28 YP_007383591.1 4598866 R 1274814 CDS YP_007383592.1 443619736 14484394 4599906..4600199 1 NC_020163.1 hypothetical protein 4600199 14484394 APECO78_22155 Escherichia coli APEC O78 hypothetical protein YP_007383592.1 4599906 D 1274814 CDS YP_007383593.1 443619737 14484395 complement(4600240..4601430) 1 NC_020163.1 COG2814 Arabinose efflux permease; ribonucleoside transporter 4601430 nepI 14484395 nepI Escherichia coli APEC O78 ribonucleoside transporter YP_007383593.1 4600240 R 1274814 CDS YP_007383594.1 443619738 14484396 complement(4601641..4602093) 1 NC_020163.1 COG0442 Prolyl-tRNA synthetase; hypothetical protein 4602093 14484396 APECO78_22165 Escherichia coli APEC O78 hypothetical protein YP_007383594.1 4601641 R 1274814 CDS YP_007383595.1 443619739 14484397 complement(4602146..4603480) 1 NC_020163.1 COG2252 Permeases; putative adenine permease 4603480 14484397 APECO78_22170 Escherichia coli APEC O78 putative adenine permease YP_007383595.1 4602146 R 1274814 CDS YP_007383596.1 443619740 14484398 4603655..4605421 1 NC_020163.1 COG1001 Adenine deaminase; cryptic adenine deaminase 4605421 14484398 APECO78_22175 Escherichia coli APEC O78 cryptic adenine deaminase YP_007383596.1 4603655 D 1274814 CDS YP_007383597.1 443619741 14484399 complement(4605466..4606857) 1 NC_020163.1 COG2271 Sugar phosphate permease; sugar phosphate antiporter 4606857 14484399 APECO78_22180 Escherichia coli APEC O78 sugar phosphate antiporter YP_007383597.1 4605466 R 1274814 CDS YP_007383598.1 443619742 14484400 complement(4606995..4608314) 1 NC_020163.1 COG2271 Sugar phosphate permease; regulatory protein UhpC 4608314 14484400 APECO78_22185 Escherichia coli APEC O78 regulatory protein UhpC YP_007383598.1 4606995 R 1274814 CDS YP_007383599.1 443619743 14484401 complement(4608324..4609826) 1 NC_020163.1 COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific; sensory histidine kinase UhpB 4609826 14484401 APECO78_22190 Escherichia coli APEC O78 sensory histidine kinase UhpB YP_007383599.1 4608324 R 1274814 CDS YP_007383600.1 443619744 14484402 complement(4609826..4610416) 1 NC_020163.1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; DNA-binding transcriptional activator UhpA 4610416 14484402 APECO78_22195 Escherichia coli APEC O78 DNA-binding transcriptional activator UhpA YP_007383600.1 4609826 R 1274814 CDS YP_007383601.1 443619745 14484403 4610387..4610497 1 NC_020163.1 hypothetical protein 4610497 14484403 APECO78_22200 Escherichia coli APEC O78 hypothetical protein YP_007383601.1 4610387 D 1274814 CDS YP_007383602.1 443619746 14484404 complement(4610491..4610781) 1 NC_020163.1 COG0440 Acetolactate synthase, small (regulatory) subunit; acetolactate synthase 1 regulatory subunit 4610781 14484404 APECO78_22205 Escherichia coli APEC O78 acetolactate synthase 1 regulatory subunit YP_007383602.1 4610491 R 1274814 CDS YP_007383603.1 443619747 14484405 complement(4610785..4612473) 1 NC_020163.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase catalytic subunit 4612473 14484405 APECO78_22210 Escherichia coli APEC O78 acetolactate synthase catalytic subunit YP_007383603.1 4610785 R 1274814 CDS YP_007383604.1 443619748 14484406 4612472..4612954 1 NC_020163.1 hypothetical protein 4612954 14484406 APECO78_22215 Escherichia coli APEC O78 hypothetical protein YP_007383604.1 4612472 D 1274814 CDS YP_007383605.1 443619749 14484407 4613242..4613331 1 NC_020163.1 toxic peptide TisB 4613331 14484407 APECO78_22220 Escherichia coli APEC O78 toxic peptide TisB YP_007383605.1 4613242 D 1274814 CDS YP_007383606.1 443619750 14484408 4613750..4614934 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; Multidrug resistance protein D 4614934 14484408 APECO78_22225 Escherichia coli APEC O78 Multidrug resistance protein D YP_007383606.1 4613750 D 1274814 CDS YP_007383607.1 443619751 14484409 complement(4614942..4615439) 1 NC_020163.1 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); transcriptional regulator 4615439 14484409 APECO78_22230 Escherichia coli APEC O78 transcriptional regulator YP_007383607.1 4614942 R 1274814 CDS YP_007383608.1 443619752 14484410 complement(4615436..4615798) 1 NC_020163.1 hypothetical protein 4615798 14484410 APECO78_22235 Escherichia coli APEC O78 hypothetical protein YP_007383608.1 4615436 R 1274814 CDS YP_007383609.1 443619753 14484411 complement(4615788..4616135) 1 NC_020163.1 COG2149 Predicted membrane protein; inner membrane protein 4616135 14484411 APECO78_22240 Escherichia coli APEC O78 inner membrane protein YP_007383609.1 4615788 R 1274814 CDS YP_007383610.1 443619754 14484412 4616245..4616694 1 NC_020163.1 inner membrane protein 4616694 14484412 APECO78_22245 Escherichia coli APEC O78 inner membrane protein YP_007383610.1 4616245 D 1274814 CDS YP_007383611.1 443619755 14484413 complement(4616741..4618234) 1 NC_020163.1 COG3119 Arylsulfatase A and related enzymes; sulfatase/phosphatase 4618234 14484413 APECO78_22250 Escherichia coli APEC O78 sulfatase/phosphatase YP_007383611.1 4616741 R 1274814 CDS YP_007383612.1 443619756 14484414 complement(4618231..4619946) 1 NC_020163.1 COG4146 Predicted symporter; transporter 4619946 14484414 APECO78_22255 Escherichia coli APEC O78 transporter YP_007383612.1 4618231 R 1274814 CDS YP_007383613.1 443619757 14484415 4620083..4621006 1 NC_020163.1 COG2207 AraC-type DNA-binding domain-containing proteins; putative DNA-binding transcriptional regulator 4621006 14484415 APECO78_22260 Escherichia coli APEC O78 putative DNA-binding transcriptional regulator YP_007383613.1 4620083 D 1274814 CDS YP_007383614.1 443619758 14484416 complement(4621105..4621179) 1 NC_020163.1 6-phospho-alpha-glucosidase 4621179 14484416 APECO78_22265 Escherichia coli APEC O78 6-phospho-alpha-glucosidase YP_007383614.1 4621105 R 1274814 CDS YP_007383615.1 443619759 14484417 complement(4621179..4621817) 1 NC_020163.1 COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases; putative 6-phospho-beta-glucosidase, NAD(P)-binding protein 4621817 14484417 APECO78_22270 Escherichia coli APEC O78 putative 6-phospho-beta-glucosidase, NAD(P)-binding protein YP_007383615.1 4621179 R 1274814 CDS YP_007383616.1 443619760 14484418 complement(4621817..4623433) 1 NC_020163.1 COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system alpha-glucoside-specific transporter subunit IICB 4623433 14484418 APECO78_22275 Escherichia coli APEC O78 PTS system alpha-glucoside-specific transporter subunit IICB YP_007383616.1 4621817 R 1274814 CDS YP_007383617.1 443619761 14484419 4623728..4624444 1 NC_020163.1 COG2188 Transcriptional regulators; DNA-binding transcriptional regulator 4624444 14484419 APECO78_22280 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007383617.1 4623728 D 1274814 CDS YP_007383618.1 443619762 14484420 complement(4624441..4626102) 1 NC_020163.1 COG2985 Predicted permease; transporter 4626102 14484420 APECO78_22285 Escherichia coli APEC O78 transporter YP_007383618.1 4624441 R 1274814 CDS YP_007383619.1 443619763 14484421 complement(4626299..4626727) 1 NC_020163.1 COG0071 Molecular chaperone (small heat shock protein); small heat shock protein B 4626727 14484421 APECO78_22290 Escherichia coli APEC O78 small heat shock protein B YP_007383619.1 4626299 R 1274814 CDS YP_007383620.1 443619764 14484422 complement(4626839..4627252) 1 NC_020163.1 COG0071 Molecular chaperone (small heat shock protein); small heat shock protein A 4627252 14484422 APECO78_22295 Escherichia coli APEC O78 small heat shock protein A YP_007383620.1 4626839 R 1274814 CDS YP_007383621.1 443619765 14484423 4627558..4627890 1 NC_020163.1 COG5645 Predicted periplasmic lipoprotein; hypothetical protein 4627890 14484423 APECO78_22300 Escherichia coli APEC O78 hypothetical protein YP_007383621.1 4627558 D 1274814 CDS YP_007383622.1 443619766 14484424 complement(4627892..4629106) 1 NC_020163.1 COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; hypothetical protein 4629106 14484424 APECO78_22305 Escherichia coli APEC O78 hypothetical protein YP_007383622.1 4627892 R 1274814 CDS YP_007383623.1 443619767 14484425 4629207..4630271 1 NC_020163.1 COG0644 Dehydrogenases (flavoproteins); putative oxidoreductase 4630271 14484425 APECO78_22310 Escherichia coli APEC O78 putative oxidoreductase YP_007383623.1 4629207 D 1274814 CDS YP_007383624.1 443619768 14484426 complement(4630268..4631560) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; D-galactonate transporter DgoT 4631560 14484426 APECO78_22315 Escherichia coli APEC O78 D-galactonate transporter DgoT YP_007383624.1 4630268 R 1274814 CDS YP_007383625.1 443619769 14484427 complement(4631680..4632828) 1 NC_020163.1 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; galactonate dehydratase 4632828 14484427 APECO78_22320 Escherichia coli APEC O78 galactonate dehydratase YP_007383625.1 4631680 R 1274814 CDS YP_007383626.1 443619770 14484428 complement(4632825..4633442) 1 NC_020163.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 4633442 14484428 APECO78_22325 Escherichia coli APEC O78 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_007383626.1 4632825 R 1274814 CDS YP_007383627.1 443619771 14484429 complement(4633426..4634304) 1 NC_020163.1 COG3734 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase 4634304 14484429 APECO78_22330 Escherichia coli APEC O78 2-oxo-3-deoxygalactonate kinase YP_007383627.1 4633426 R 1274814 CDS YP_007383628.1 443619772 14484430 complement(4634301..4634990) 1 NC_020163.1 COG2186 Transcriptional regulators; DNA-binding transcriptional regulator 4634990 14484430 APECO78_22335 Escherichia coli APEC O78 DNA-binding transcriptional regulator YP_007383628.1 4634301 R 1274814 CDS YP_007383629.1 443619773 14484431 4635268..4635924 1 NC_020163.1 hypothetical protein 4635924 14484431 APECO78_22340 Escherichia coli APEC O78 hypothetical protein YP_007383629.1 4635268 D 1274814 CDS YP_007383630.1 443619774 14484432 complement(4635970..4636782) 1 NC_020163.1 COG0561 Predicted hydrolases of the HAD superfamily; sugar phosphate phosphatase 4636782 14484432 APECO78_22345 Escherichia coli APEC O78 sugar phosphate phosphatase YP_007383630.1 4635970 R 1274814 CDS YP_007383631.1 443619775 14484433 complement(4636897..4637295) 1 NC_020163.1 COG3753 Uncharacterized protein conserved in bacteria; hypothetical protein 4637295 14484433 APECO78_22350 Escherichia coli APEC O78 hypothetical protein YP_007383631.1 4636897 R 1274814 CDS YP_007383632.1 443619776 14484434 complement(4637315..4637515) 1 NC_020163.1 hypothetical protein 4637515 14484434 APECO78_22355 Escherichia coli APEC O78 hypothetical protein YP_007383632.1 4637315 R 1274814 CDS YP_007383633.1 443619777 14484435 complement(4637535..4639949) 1 NC_020163.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B 4639949 14484435 APECO78_22360 Escherichia coli APEC O78 DNA gyrase subunit B YP_007383633.1 4637535 R 1274814 CDS YP_007383634.1 443619778 14484436 complement(4639978..4641051) 1 NC_020163.1 COG1195 Recombinational DNA repair ATPase (RecF pathway); recombination protein F 4641051 14484436 APECO78_22365 Escherichia coli APEC O78 recombination protein F YP_007383634.1 4639978 R 1274814 CDS YP_007383635.1 443619779 14484437 complement(4641051..4642151) 1 NC_020163.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta 4642151 14484437 APECO78_22370 Escherichia coli APEC O78 DNA polymerase III subunit beta YP_007383635.1 4641051 R 1274814 CDS YP_007383636.1 443619780 14484438 complement(4642156..4643559) 1 NC_020163.1 COG0593 ATPase involved in DNA replication initiation; DNA replication initiation factor 4643559 14484438 APECO78_22375 Escherichia coli APEC O78 DNA replication initiation factor YP_007383636.1 4642156 R 1274814 CDS YP_007383637.1 443619781 14484439 4644166..4644306 1 NC_020163.1 COG0230 Ribosomal protein L34; 50S ribosomal protein L34 4644306 14484439 APECO78_22380 Escherichia coli APEC O78 50S ribosomal protein L34 YP_007383637.1 4644166 D 1274814 CDS YP_007383638.1 443619782 14484440 4644323..4644682 1 NC_020163.1 COG0594 RNase P protein component; ribonuclease P 4644682 14484440 APECO78_22385 Escherichia coli APEC O78 ribonuclease P YP_007383638.1 4644323 D 1274814 CDS YP_007383639.1 443619783 14484441 4644646..4644903 1 NC_020163.1 COG0759 Uncharacterized conserved protein; hypothetical protein 4644903 14484441 APECO78_22390 Escherichia coli APEC O78 hypothetical protein YP_007383639.1 4644646 D 1274814 CDS YP_007383640.1 443619784 14484442 4644906..4646552 1 NC_020163.1 COG0706 Preprotein translocase subunit YidC; membrane protein insertase 4646552 14484442 APECO78_22395 Escherichia coli APEC O78 membrane protein insertase YP_007383640.1 4644906 D 1274814 CDS YP_007383641.1 443619785 14484443 4646658..4648022 1 NC_020163.1 COG0486 Predicted GTPase; tRNA modification GTPase TrmE 4648022 trmE 14484443 trmE Escherichia coli APEC O78 tRNA modification GTPase TrmE YP_007383641.1 4646658 D 1274814 CDS YP_007383642.1 443619786 14484444 4648241..4648339 1 NC_020163.1 tryptophanase leader peptide 4648339 14484444 APECO78_22405 Escherichia coli APEC O78 tryptophanase leader peptide YP_007383642.1 4648241 D 1274814 CDS YP_007383643.1 443619787 14484445 4648560..4649975 1 NC_020163.1 COG3033 Tryptophanase; tryptophanase/L-cysteine desulfhydrase, PLP-dependent 4649975 14484445 APECO78_22410 Escherichia coli APEC O78 tryptophanase/L-cysteine desulfhydrase, PLP-dependent YP_007383643.1 4648560 D 1274814 CDS YP_007383644.1 443619788 14484446 4650066..4651313 1 NC_020163.1 COG0814 Amino acid permeases; tryptophan permease TnaB 4651313 14484446 APECO78_22415 Escherichia coli APEC O78 tryptophan permease TnaB YP_007383644.1 4650066 D 1274814 CDS YP_007383645.1 443619789 14484447 4651446..4652621 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; multidrug efflux system protein MdtL 4652621 14484447 APECO78_22420 Escherichia coli APEC O78 multidrug efflux system protein MdtL YP_007383645.1 4651446 D 1274814 CDS YP_007383646.1 443619790 14484448 4652596..4653555 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator YidZ 4653555 14484448 APECO78_22425 Escherichia coli APEC O78 DNA-binding transcriptional regulator YidZ YP_007383646.1 4652596 D 1274814 CDS YP_007383647.1 443619791 14484449 4653712..4654461 1 NC_020163.1 COG2091 Phosphopantetheinyl transferase; hypothetical protein 4654461 14484449 APECO78_22430 Escherichia coli APEC O78 hypothetical protein YP_007383647.1 4653712 D 1274814 CDS YP_007383648.1 443619792 14484450 4654483..4655049 1 NC_020163.1 COG0431 Predicted flavoprotein; hypothetical protein 4655049 14484450 APECO78_22435 Escherichia coli APEC O78 hypothetical protein YP_007383648.1 4654483 D 1274814 CDS YP_007383649.1 443619793 14484451 complement(4655103..4656440) 1 NC_020163.1 COG2252 Permeases; hypothetical protein 4656440 14484451 APECO78_22440 Escherichia coli APEC O78 hypothetical protein YP_007383649.1 4655103 R 1274814 CDS YP_007383650.1 443619794 14484452 4656607..4657272 1 NC_020163.1 COG0637 Predicted phosphatase/phosphohexomutase; 6-phosphogluconate phosphatase 4657272 14484452 APECO78_22445 Escherichia coli APEC O78 6-phosphogluconate phosphatase YP_007383650.1 4656607 D 1274814 CDS YP_007383651.1 443619795 14484453 4657339..4657812 1 NC_020163.1 hypothetical protein 4657812 14484453 APECO78_22450 Escherichia coli APEC O78 hypothetical protein YP_007383651.1 4657339 D 1274814 CDS YP_007383652.1 443619796 14484454 4657861..4658448 1 NC_020163.1 COG3196 Uncharacterized protein conserved in bacteria; hypothetical protein 4658448 14484454 APECO78_22455 Escherichia coli APEC O78 hypothetical protein YP_007383652.1 4657861 D 1274814 CDS YP_007383653.1 443619797 14484455 complement(4658510..4659232) 1 NC_020163.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; putative 6-phosphogluconolactonase 4659232 14484455 APECO78_22460 Escherichia coli APEC O78 putative 6-phosphogluconolactonase YP_007383653.1 4658510 R 1274814 CDS YP_007383654.1 443619798 14484456 complement(4659247..4660416) 1 NC_020163.1 COG2382 Enterochelin esterase and related enzymes; xylanase 4660416 14484456 APECO78_22465 Escherichia coli APEC O78 xylanase YP_007383654.1 4659247 R 1274814 CDS YP_007383655.1 443619799 14484457 complement(4660443..4662059) 1 NC_020163.1 COG4580 Maltoporin (phage lambda and maltose receptor); carbohydrate-specific outer membrane porin, cryptic 4662059 14484457 APECO78_22470 Escherichia coli APEC O78 carbohydrate-specific outer membrane porin, cryptic YP_007383655.1 4660443 R 1274814 CDS YP_007383656.1 443619800 14484458 complement(4662145..4663539) 1 NC_020163.1 COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; cryptic phospho-beta-glucosidase B 4663539 14484458 APECO78_22475 Escherichia coli APEC O78 cryptic phospho-beta-glucosidase B YP_007383656.1 4662145 R 1274814 CDS YP_007383657.1 443619801 14484459 complement(4663558..4665435) 1 NC_020163.1 COG1264 Phosphotransferase system IIB components; PTS system beta-glucoside-specific transporter subunits IIABC 4665435 14484459 APECO78_22480 Escherichia coli APEC O78 PTS system beta-glucoside-specific transporter subunits IIABC YP_007383657.1 4663558 R 1274814 CDS YP_007383658.1 443619802 14484460 complement(4665567..4666403) 1 NC_020163.1 COG3711 Transcriptional antiterminator; transcriptional antiterminator BglG 4666403 14484460 APECO78_22485 Escherichia coli APEC O78 transcriptional antiterminator BglG YP_007383658.1 4665567 R 1274814 CDS YP_007383659.1 443619803 14484461 complement(4666689..4667414) 1 NC_020163.1 COG0704 Phosphate uptake regulator; transcriptional regulator PhoU 4667414 14484461 APECO78_22490 Escherichia coli APEC O78 transcriptional regulator PhoU YP_007383659.1 4666689 R 1274814 CDS YP_007383660.1 443619804 14484462 complement(4667429..4668202) 1 NC_020163.1 COG1117 ABC-type phosphate transport system, ATPase component; phosphate transporter ATP-binding protein 4668202 14484462 APECO78_22495 Escherichia coli APEC O78 phosphate transporter ATP-binding protein YP_007383660.1 4667429 R 1274814 CDS YP_007383661.1 443619805 14484463 complement(4668293..4669183) 1 NC_020163.1 COG0581 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PtsA 4669183 pstA 14484463 pstA Escherichia coli APEC O78 phosphate transporter permease subunit PtsA YP_007383661.1 4668293 R 1274814 CDS YP_007383662.1 443619806 14484464 complement(4669183..4670142) 1 NC_020163.1 COG0573 ABC-type phosphate transport system, permease component; phosphate transporter permease subunit PstC 4670142 14484464 APECO78_22505 Escherichia coli APEC O78 phosphate transporter permease subunit PstC YP_007383662.1 4669183 R 1274814 CDS YP_007383663.1 443619807 14484465 complement(4670229..4671269) 1 NC_020163.1 COG0226 ABC-type phosphate transport system, periplasmic component; phosphate ABC transporter substrate-binding protein 4671269 14484465 APECO78_22510 Escherichia coli APEC O78 phosphate ABC transporter substrate-binding protein YP_007383663.1 4670229 R 1274814 CDS YP_007383664.1 443619808 14484466 complement(4671517..4672590) 1 NC_020163.1 putative fimbrial protein LpfD; putative adhesin 4672590 14484466 APECO78_22515 Escherichia coli APEC O78 putative fimbrial protein LpfD; putative adhesin YP_007383664.1 4671517 R 1274814 CDS YP_007383665.1 443619809 14484467 complement(4672601..4675123) 1 NC_020163.1 COG3188 P pilus assembly protein, porin PapC; outer membrane usher protein 4675123 14484467 APECO78_22520 Escherichia coli APEC O78 outer membrane usher protein YP_007383665.1 4672601 R 1274814 CDS YP_007383666.1 443619810 14484468 complement(4675148..4675879) 1 NC_020163.1 COG3121 P pilus assembly protein, chaperone PapD; fimbrial chaperone protein 4675879 lfpB 14484468 lfpB Escherichia coli APEC O78 fimbrial chaperone protein YP_007383666.1 4675148 R 1274814 CDS YP_007383667.1 443619811 14484469 complement(4675927..4676499) 1 NC_020163.1 COG3539 P pilus assembly protein, pilin FimA; fimbrial protein 4676499 lpfA 14484469 lpfA Escherichia coli APEC O78 fimbrial protein YP_007383667.1 4675927 R 1274814 CDS YP_007383668.1 443619812 14484470 complement(4676801..4678630) 1 NC_020163.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 4678630 14484470 APECO78_22535 Escherichia coli APEC O78 glucosamine--fructose-6-phosphate aminotransferase YP_007383668.1 4676801 R 1274814 CDS YP_007383669.1 443619813 14484471 complement(4678792..4680162) 1 NC_020163.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4680162 14484471 APECO78_22540 Escherichia coli APEC O78 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_007383669.1 4678792 R 1274814 CDS YP_007383670.1 443619814 14484472 complement(4680513..4680932) 1 NC_020163.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon 4680932 14484472 APECO78_22545 Escherichia coli APEC O78 F0F1 ATP synthase subunit epsilon YP_007383670.1 4680513 R 1274814 CDS YP_007383671.1 443619815 14484473 complement(4680953..4682335) 1 NC_020163.1 COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta 4682335 14484473 APECO78_22550 Escherichia coli APEC O78 F0F1 ATP synthase subunit beta YP_007383671.1 4680953 R 1274814 CDS YP_007383672.1 443619816 14484474 complement(4682362..4683225) 1 NC_020163.1 COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma 4683225 14484474 APECO78_22555 Escherichia coli APEC O78 F0F1 ATP synthase subunit gamma YP_007383672.1 4682362 R 1274814 CDS YP_007383673.1 443619817 14484475 complement(4683276..4684817) 1 NC_020163.1 COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha 4684817 14484475 APECO78_22560 Escherichia coli APEC O78 F0F1 ATP synthase subunit alpha YP_007383673.1 4683276 R 1274814 CDS YP_007383674.1 443619818 14484476 complement(4684830..4685363) 1 NC_020163.1 COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); F0F1 ATP synthase subunit delta 4685363 14484476 APECO78_22565 Escherichia coli APEC O78 F0F1 ATP synthase subunit delta YP_007383674.1 4684830 R 1274814 CDS YP_007383675.1 443619819 14484477 complement(4685378..4685848) 1 NC_020163.1 COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B 4685848 14484477 APECO78_22570 Escherichia coli APEC O78 F0F1 ATP synthase subunit B YP_007383675.1 4685378 R 1274814 CDS YP_007383676.1 443619820 14484478 complement(4685910..4686149) 1 NC_020163.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; F0F1 ATP synthase subunit C 4686149 14484478 APECO78_22575 Escherichia coli APEC O78 F0F1 ATP synthase subunit C YP_007383676.1 4685910 R 1274814 CDS YP_007383677.1 443619821 14484479 complement(4686196..4687011) 1 NC_020163.1 COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A 4687011 14484479 APECO78_22580 Escherichia coli APEC O78 F0F1 ATP synthase subunit A YP_007383677.1 4686196 R 1274814 CDS YP_007383678.1 443619822 14484480 complement(4687020..4687400) 1 NC_020163.1 F0F1 ATP synthase subunit I 4687400 14484480 APECO78_22585 Escherichia coli APEC O78 F0F1 ATP synthase subunit I YP_007383678.1 4687020 R 1274814 CDS YP_007383679.1 443619823 14484481 complement(4688017..4688640) 1 NC_020163.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB 4688640 14484481 APECO78_22590 Escherichia coli APEC O78 16S rRNA methyltransferase GidB YP_007383679.1 4688017 R 1274814 CDS YP_007383680.1 443619824 14484482 complement(4688704..4690593) 1 NC_020163.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4690593 14484482 APECO78_22595 Escherichia coli APEC O78 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_007383680.1 4688704 R 1274814 CDS YP_007383681.1 443619825 14484483 complement(4690972..4691415) 1 NC_020163.1 COG0716 Flavodoxins; flavodoxin 4691415 14484483 APECO78_22600 Escherichia coli APEC O78 flavodoxin YP_007383681.1 4690972 R 1274814 CDS YP_007383682.1 443619826 14484484 complement(4691505..4691963) 1 NC_020163.1 COG1522 Transcriptional regulators; hypothetical protein 4691963 14484484 APECO78_22605 Escherichia coli APEC O78 hypothetical protein YP_007383682.1 4691505 R 1274814 CDS YP_007383683.1 443619827 14484485 4692115..4693107 1 NC_020163.1 COG2502 Asparagine synthetase A; asparagine synthetase AsnA 4693107 14484485 APECO78_22610 Escherichia coli APEC O78 asparagine synthetase AsnA YP_007383683.1 4692115 D 1274814 CDS YP_007383684.1 443619828 14484486 complement(4693112..4694563) 1 NC_020163.1 COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; hypothetical protein 4694563 14484486 APECO78_22615 Escherichia coli APEC O78 hypothetical protein YP_007383684.1 4693112 R 1274814 CDS YP_007383685.1 443619829 14484487 complement(4694557..4696053) 1 NC_020163.1 COG0714 MoxR-like ATPases; regulatory ATPase RavA 4696053 14484487 APECO78_22620 Escherichia coli APEC O78 regulatory ATPase RavA YP_007383685.1 4694557 R 1274814 CDS YP_007383686.1 443619830 14484488 4696276..4698144 1 NC_020163.1 COG3158 K+ transporter; potassium transport protein Kup 4698144 14484488 APECO78_22625 Escherichia coli APEC O78 potassium transport protein Kup YP_007383686.1 4696276 D 1274814 CDS YP_007383687.1 443619831 14484489 4698311..4698730 1 NC_020163.1 COG1869 ABC-type ribose transport system, auxiliary component; D-ribose pyranase 4698730 14484489 APECO78_22630 Escherichia coli APEC O78 D-ribose pyranase YP_007383687.1 4698311 D 1274814 CDS YP_007383688.1 443619832 14484490 4698738..4700243 1 NC_020163.1 COG1129 ABC-type sugar transport system, ATPase component; D-ribose ABC transporter ATP-binding protein 4700243 14484490 APECO78_22635 Escherichia coli APEC O78 D-ribose ABC transporter ATP-binding protein YP_007383688.1 4698738 D 1274814 CDS YP_007383689.1 443619833 14484491 4700248..4701213 1 NC_020163.1 COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; ribose ABC transporter permease 4701213 14484491 APECO78_22640 Escherichia coli APEC O78 ribose ABC transporter permease YP_007383689.1 4700248 D 1274814 CDS YP_007383690.1 443619834 14484492 4701238..4702128 1 NC_020163.1 COG1879 ABC-type sugar transport system, periplasmic component; D-ribose transporter subunit RbsB 4702128 14484492 APECO78_22645 Escherichia coli APEC O78 D-ribose transporter subunit RbsB YP_007383690.1 4701238 D 1274814 CDS YP_007383691.1 443619835 14484493 4702254..4703183 1 NC_020163.1 COG0524 Sugar kinases, ribokinase family; ribokinase 4703183 14484493 APECO78_22650 Escherichia coli APEC O78 ribokinase YP_007383691.1 4702254 D 1274814 CDS YP_007383692.1 443619836 14484494 4703187..4704179 1 NC_020163.1 COG1609 Transcriptional regulators; transcriptional repressor RbsR 4704179 14484494 APECO78_22655 Escherichia coli APEC O78 transcriptional repressor RbsR YP_007383692.1 4703187 D 1274814 CDS YP_007383693.1 443619837 14484495 complement(4704145..4705572) 1 NC_020163.1 COG0477 Permeases of the major facilitator superfamily; multidrug or homocysteine efflux system 4705572 14484495 APECO78_22660 Escherichia coli APEC O78 multidrug or homocysteine efflux system YP_007383693.1 4704145 R 1274814 CDS YP_007383694.1 443619838 14484496 complement(4705595..4706287) 1 NC_020163.1 COG2186 Transcriptional regulators; GntR family transcriptional regulator 4706287 14484496 APECO78_22665 Escherichia coli APEC O78 GntR family transcriptional regulator YP_007383694.1 4705595 R 1274814 CDS YP_007383695.1 443619839 14484661 complement(4712183..4713022) 1 NC_020163.1 COG0583 Transcriptional regulator; transcriptional regulator HdfR 4713022 14484661 APECO78_22670 Escherichia coli APEC O78 transcriptional regulator HdfR YP_007383695.1 4712183 R 1274814 CDS YP_007383696.1 443619840 14484498 4713141..4713479 1 NC_020163.1 COG3085 Uncharacterized protein conserved in bacteria; hypothetical protein 4713479 14484498 APECO78_22675 Escherichia coli APEC O78 hypothetical protein YP_007383696.1 4713141 D 1274814 CDS YP_007383697.1 443619841 14484499 complement(4713504..4715024) 1 NC_020163.1 COG0606 Predicted ATPase with chaperone activity; ATP-dependent protease 4715024 14484499 APECO78_22680 Escherichia coli APEC O78 ATP-dependent protease YP_007383697.1 4713504 R 1274814 CDS YP_007383698.1 443619842 14484500 4715615..4717261 1 NC_020163.1 COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; acetolactate synthase 2 catalytic subunit 4717261 14484500 APECO78_22685 Escherichia coli APEC O78 acetolactate synthase 2 catalytic subunit YP_007383698.1 4715615 D 1274814 CDS YP_007383699.1 443619843 14484501 4717258..4717521 1 NC_020163.1 COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit; acetolactate synthase 2 regulatory subunit 4717521 14484501 APECO78_22690 Escherichia coli APEC O78 acetolactate synthase 2 regulatory subunit YP_007383699.1 4717258 D 1274814 CDS YP_007383700.1 443619844 14484502 4717541..4718470 1 NC_020163.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase 4718470 14484502 APECO78_22695 Escherichia coli APEC O78 branched-chain amino acid aminotransferase YP_007383700.1 4717541 D 1274814 CDS YP_007383701.1 443619845 14484503 4718535..4720385 1 NC_020163.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; dihydroxy-acid dehydratase 4720385 14484503 APECO78_22700 Escherichia coli APEC O78 dihydroxy-acid dehydratase YP_007383701.1 4718535 D 1274814 CDS YP_007383702.1 443619846 14484504 4720388..4721932 1 NC_020163.1 COG1171 Threonine dehydratase; threonine dehydratase 4721932 14484504 APECO78_22705 Escherichia coli APEC O78 threonine dehydratase YP_007383702.1 4720388 D 1274814 CDS YP_007383703.1 443619847 14484505 complement(4721929..4722819) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator IlvY 4722819 14484505 APECO78_22710 Escherichia coli APEC O78 DNA-binding transcriptional regulator IlvY YP_007383703.1 4721929 R 1274814 CDS YP_007383704.1 443619848 14484506 4722969..4724444 1 NC_020163.1 COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 4724444 14484506 APECO78_22715 Escherichia coli APEC O78 ketol-acid reductoisomerase YP_007383704.1 4722969 D 1274814 CDS YP_007383705.1 443619849 14484507 complement(4724531..4724812) 1 NC_020163.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase C 4724812 14484507 APECO78_22720 Escherichia coli APEC O78 peptidyl-prolyl cis-trans isomerase C YP_007383705.1 4724531 R 1274814 CDS YP_007383706.1 443619850 14484508 complement(4725011..4725460) 1 NC_020163.1 COG3692 Uncharacterized protein conserved in bacteria; hypothetical protein 4725460 14484508 APECO78_22725 Escherichia coli APEC O78 hypothetical protein YP_007383706.1 4725011 R 1274814 CDS YP_007383707.1 443619851 14484509 4725677..4727698 1 NC_020163.1 COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase Rep 4727698 14484509 APECO78_22730 Escherichia coli APEC O78 ATP-dependent DNA helicase Rep YP_007383707.1 4725677 D 1274814 CDS YP_007383708.1 443619852 14484510 complement(4727745..4729229) 1 NC_020163.1 COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase 4729229 14484510 APECO78_22735 Escherichia coli APEC O78 guanosine pentaphosphate phosphohydrolase YP_007383708.1 4727745 R 1274814 CDS YP_007383709.1 443619853 14484511 complement(4729363..4730628) 1 NC_020163.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlB 4730628 14484511 APECO78_22740 Escherichia coli APEC O78 ATP-dependent RNA helicase RhlB YP_007383709.1 4729363 R 1274814 CDS YP_007383710.1 443619854 14484512 4730759..4731088 1 NC_020163.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 4731088 trxA 14484512 trxA Escherichia coli APEC O78 thioredoxin YP_007383710.1 4730759 D 1274814 CDS YP_007383711.1 443619855 14484513 4731229..4731330 1 NC_020163.1 rho operon leader peptide 4731330 14484513 APECO78_22750 Escherichia coli APEC O78 rho operon leader peptide YP_007383711.1 4731229 D 1274814 CDS YP_007383712.1 443619856 14484514 4731415..4732674 1 NC_020163.1 COG1158 Transcription termination factor; transcription termination factor Rho 4732674 rho 14484514 rho Escherichia coli APEC O78 transcription termination factor Rho YP_007383712.1 4731415 D 1274814 CDS YP_007383713.1 443619857 14484515 4732684..4732902 1 NC_020163.1 hypothetical protein 4732902 14484515 APECO78_22760 Escherichia coli APEC O78 hypothetical protein YP_007383713.1 4732684 D 1274814 CDS YP_007383714.1 443619858 14484516 4732914..4734017 1 NC_020163.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4734017 14484516 APECO78_22765 Escherichia coli APEC O78 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase YP_007383714.1 4732914 D 1274814 CDS YP_007383715.1 443619859 14484517 4734029..4735075 1 NC_020163.1 COG3765 Chain length determinant protein; lipopolysaccharide biosynthesis protein WzzE 4735075 14484517 APECO78_22770 Escherichia coli APEC O78 lipopolysaccharide biosynthesis protein WzzE YP_007383715.1 4734029 D 1274814 CDS YP_007383716.1 443619860 14484518 4735131..4736261 1 NC_020163.1 COG0381 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetyl glucosamine-2-epimerase 4736261 14484518 APECO78_22775 Escherichia coli APEC O78 UDP-N-acetyl glucosamine-2-epimerase YP_007383716.1 4735131 D 1274814 CDS YP_007383717.1 443619861 14484519 4736258..4737520 1 NC_020163.1 COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; UDP-N-acetyl-D-mannosamine dehydrogenase 4737520 14484519 APECO78_22780 Escherichia coli APEC O78 UDP-N-acetyl-D-mannosamine dehydrogenase YP_007383717.1 4736258 D 1274814 CDS YP_007383718.1 443619862 14484520 4737520..4738587 1 NC_020163.1 COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4738587 14484520 APECO78_22785 Escherichia coli APEC O78 dTDP-glucose 4,6-dehydratase YP_007383718.1 4737520 D 1274814 CDS YP_007383719.1 443619863 14484521 4738606..4739487 1 NC_020163.1 COG1209 dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase 4739487 14484521 APECO78_22790 Escherichia coli APEC O78 glucose-1-phosphate thymidylyltransferase YP_007383719.1 4738606 D 1274814 CDS YP_007383720.1 443619864 14484522 4739465..4740139 1 NC_020163.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; TDP-fucosamine acetyltransferase 4740139 14484522 APECO78_22795 Escherichia coli APEC O78 TDP-fucosamine acetyltransferase YP_007383720.1 4739465 D 1274814 CDS YP_007383721.1 443619865 14484523 4740144..4741274 1 NC_020163.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4741274 14484523 APECO78_22800 Escherichia coli APEC O78 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_007383721.1 4740144 D 1274814 CDS YP_007383722.1 443619866 14484524 4741276..4742526 1 NC_020163.1 COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; O-antigen translocase 4742526 14484524 APECO78_22805 Escherichia coli APEC O78 O-antigen translocase YP_007383722.1 4741276 D 1274814 CDS YP_007383723.1 443619867 14484525 4742523..4743602 1 NC_020163.1 4-alpha-L-fucosyltransferase 4743602 14484525 APECO78_22810 Escherichia coli APEC O78 4-alpha-L-fucosyltransferase YP_007383723.1 4742523 D 1274814 CDS YP_007383724.1 443619868 14484526 4743599..4744951 1 NC_020163.1 common antigen polymerase 4744951 14484526 APECO78_22815 Escherichia coli APEC O78 common antigen polymerase YP_007383724.1 4743599 D 1274814 CDS YP_007383725.1 443619869 14484527 4744954..4745694 1 NC_020163.1 COG1922 Teichoic acid biosynthesis proteins; UDP-N-acetyl-D-mannosaminuronic acid transferase 4745694 14484527 APECO78_22820 Escherichia coli APEC O78 UDP-N-acetyl-D-mannosaminuronic acid transferase YP_007383725.1 4744954 D 1274814 CDS YP_007383726.1 443619870 14484528 4745885..4747270 1 NC_020163.1 COG1113 Gamma-aminobutyrate permease and related permeases; transport protein YifK 4747270 14484528 APECO78_22825 Escherichia coli APEC O78 transport protein YifK YP_007383726.1 4745885 D 1274814 CDS YP_007383727.1 443619871 14484665 4747956..4749191 1 NC_020163.1 COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); arylsulfatase regulator 4749191 14484665 APECO78_22830 Escherichia coli APEC O78 arylsulfatase regulator YP_007383727.1 4747956 D 1274814 CDS YP_007383728.1 443619872 14484530 complement(4749275..4749436) 1 NC_020163.1 hypothetical protein 4749436 14484530 APECO78_22835 Escherichia coli APEC O78 hypothetical protein YP_007383728.1 4749275 R 1274814 CDS YP_007383729.1 443619873 14484531 complement(4750115..4751311) 1 NC_020163.1 COG3071 Uncharacterized enzyme of heme biosynthesis; putative protoheme IX biogenesis protein 4751311 14484531 APECO78_22840 Escherichia coli APEC O78 putative protoheme IX biogenesis protein YP_007383729.1 4750115 R 1274814 CDS YP_007383730.1 443619874 14484532 complement(4751314..4752519) 1 NC_020163.1 COG2959 Uncharacterized enzyme of heme biosynthesis; uroporphyrinogen III C-methyltransferase 4752519 14484532 APECO78_22845 Escherichia coli APEC O78 uroporphyrinogen III C-methyltransferase YP_007383730.1 4751314 R 1274814 CDS YP_007383731.1 443619875 14484533 complement(4752541..4753281) 1 NC_020163.1 COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 4753281 hemD 14484533 hemD Escherichia coli APEC O78 uroporphyrinogen-III synthase YP_007383731.1 4752541 R 1274814 CDS YP_007383732.1 443619876 14484534 complement(4753278..4754219) 1 NC_020163.1 COG0181 Porphobilinogen deaminase; porphobilinogen deaminase 4754219 hemC 14484534 hemC Escherichia coli APEC O78 porphobilinogen deaminase YP_007383732.1 4753278 R 1274814 CDS YP_007383733.1 443619877 14484535 4754606..4757152 1 NC_020163.1 COG3072 Adenylate cyclase; adenylate cyclase 4757152 cyaA 14484535 cyaA Escherichia coli APEC O78 adenylate cyclase YP_007383733.1 4754606 D 1274814 CDS YP_007383734.1 443619878 14484536 complement(4757192..4757512) 1 NC_020163.1 COG1965 Protein implicated in iron transport, frataxin homolog; frataxin-like protein 4757512 cyaY 14484536 cyaY Escherichia coli APEC O78 frataxin-like protein YP_007383734.1 4757192 R 1274814 CDS YP_007383735.1 443619879 14484537 4757627..4757788 1 NC_020163.1 hypothetical protein 4757788 14484537 APECO78_22870 Escherichia coli APEC O78 hypothetical protein YP_007383735.1 4757627 D 1274814 CDS YP_007383736.1 443619880 14484538 4757975..4758178 1 NC_020163.1 COG5567 Predicted small periplasmic lipoprotein; hypothetical protein 4758178 14484538 APECO78_22875 Escherichia coli APEC O78 hypothetical protein YP_007383736.1 4757975 D 1274814 CDS YP_007383737.1 443619881 14484539 4758215..4759039 1 NC_020163.1 COG0253 Diaminopimelate epimerase; diaminopimelate epimerase 4759039 14484539 APECO78_22880 Escherichia coli APEC O78 diaminopimelate epimerase YP_007383737.1 4758215 D 1274814 CDS YP_007383738.1 443619882 14484540 4759036..4759743 1 NC_020163.1 COG3159 Uncharacterized protein conserved in bacteria; hypothetical protein 4759743 14484540 APECO78_22885 Escherichia coli APEC O78 hypothetical protein YP_007383738.1 4759036 D 1274814 CDS YP_007383739.1 443619883 14484541 4759740..4760636 1 NC_020163.1 COG4973 Site-specific recombinase XerC; site-specific tyrosine recombinase XerC 4760636 14484541 APECO78_22890 Escherichia coli APEC O78 site-specific tyrosine recombinase XerC YP_007383739.1 4759740 D 1274814 CDS YP_007383740.1 443619884 14484542 4760636..4761352 1 NC_020163.1 COG1011 Predicted hydrolase (HAD superfamily); flavin mononucleotide phosphatase 4761352 14484542 APECO78_22895 Escherichia coli APEC O78 flavin mononucleotide phosphatase YP_007383740.1 4760636 D 1274814 CDS YP_007383741.1 443619885 14484543 4761436..4763598 1 NC_020163.1 COG0210 Superfamily I DNA and RNA helicases; DNA-dependent helicase II 4763598 14484543 APECO78_22900 Escherichia coli APEC O78 DNA-dependent helicase II YP_007383741.1 4761436 D 1274814 CDS YP_007383742.1 443619886 14484544 complement(4763745..4764509) 1 NC_020163.1 COG3698 Predicted periplasmic protein; hypothetical protein 4764509 14484544 APECO78_22905 Escherichia coli APEC O78 hypothetical protein YP_007383742.1 4763745 R 1274814 CDS YP_007383743.1 443619887 14484545 4764879..4765829 1 NC_020163.1 COG0598 Mg2+ and Co2+ transporters; magnesium/nickel/cobalt transporter CorA 4765829 14484545 APECO78_22910 Escherichia coli APEC O78 magnesium/nickel/cobalt transporter CorA YP_007383743.1 4764879 D 1274814 CDS YP_007383744.1 443619888 14484546 complement(4765872..4766252) 1 NC_020163.1 COG0342 Preprotein translocase subunit SecD; hypothetical protein 4766252 14484546 APECO78_22915 Escherichia coli APEC O78 hypothetical protein YP_007383744.1 4765872 R 1274814 CDS YP_007383745.1 443619889 14484547 complement(4766266..4766646) 1 NC_020163.1 hypothetical protein 4766646 14484547 APECO78_22920 Escherichia coli APEC O78 hypothetical protein YP_007383745.1 4766266 R 1274814 CDS YP_007383746.1 443619890 14484548 complement(4766741..4767631) 1 NC_020163.1 COG2962 Predicted permeases; putative chloramphenicol resistance permease 4767631 14484548 APECO78_22925 Escherichia coli APEC O78 putative chloramphenicol resistance permease YP_007383746.1 4766741 R 1274814 CDS YP_007383747.1 443619891 14484549 complement(4767683..4768150) 1 NC_020163.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein 4768150 14484549 APECO78_22930 Escherichia coli APEC O78 hypothetical protein YP_007383747.1 4767683 R 1274814 CDS YP_007383748.1 443619892 14484550 4768315..4769184 1 NC_020163.1 COG2829 Outer membrane phospholipase A; phospholipase A 4769184 14484550 APECO78_22935 Escherichia coli APEC O78 phospholipase A YP_007383748.1 4768315 D 1274814 CDS YP_007383749.1 443619893 14484551 4769317..4771146 1 NC_020163.1 COG0514 Superfamily II DNA helicase; ATP-dependent DNA helicase RecQ 4771146 14484551 APECO78_22940 Escherichia coli APEC O78 ATP-dependent DNA helicase RecQ YP_007383749.1 4769317 D 1274814 CDS YP_007383750.1 443619894 14484552 4771210..4771830 1 NC_020163.1 COG1280 Putative threonine efflux protein; threonine efflux system 4771830 14484552 APECO78_22945 Escherichia coli APEC O78 threonine efflux system YP_007383750.1 4771210 D 1274814 CDS YP_007383751.1 443619895 14484553 complement(4771892..4772512) 1 NC_020163.1 COG1280 Putative threonine efflux protein; homoserine/homoserine lactone efflux protein 4772512 14484553 APECO78_22950 Escherichia coli APEC O78 homoserine/homoserine lactone efflux protein YP_007383751.1 4771892 R 1274814 CDS YP_007383752.1 443619896 14484554 4772623..4773645 1 NC_020163.1 COG2267 Lysophospholipase; lysophospholipase L2 4773645 14484554 APECO78_22955 Escherichia coli APEC O78 lysophospholipase L2 YP_007383752.1 4772623 D 1274814 CDS YP_007383753.1 443619897 14484555 4773653..4774453 1 NC_020163.1 COG0561 Predicted hydrolases of the HAD superfamily; hydrolase 4774453 14484555 APECO78_22960 Escherichia coli APEC O78 hydrolase YP_007383753.1 4773653 D 1274814 CDS YP_007383754.1 443619898 14484556 4774529..4775428 1 NC_020163.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; membrane protein YigM 4775428 14484556 APECO78_22965 Escherichia coli APEC O78 membrane protein YigM YP_007383754.1 4774529 D 1274814 CDS YP_007383755.1 443619899 14484557 complement(4775316..4776269) 1 NC_020163.1 COG0583 Transcriptional regulator; DNA-binding transcriptional regulator MetR 4776269 14484557 APECO78_22970 Escherichia coli APEC O78 DNA-binding transcriptional regulator MetR YP_007383755.1 4775316 R 1274814 CDS YP_007383756.1 443619900 14484558 4776387..4778648 1 NC_020163.1 COG0620 Methionine synthase II (cobalamin-independent); 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 4778648 14484558 APECO78_22975 Escherichia coli APEC O78 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_007383756.1 4776387 D 1274814 CDS YP_007383757.1 443619901 14484559 complement(4778687..4779502) 1 NC_020163.1 COG0412 Dienelactone hydrolase and related enzymes; putative dienelactone hydrolase-like enzyme 4779502 14484559 APECO78_22980 Escherichia coli APEC O78 putative dienelactone hydrolase-like enzyme YP_007383757.1 4778687 R 1274814 CDS YP_007383758.1 443619902 14484560 4779764..4780525 1 NC_020163.1 COG2820 Uridine phosphorylase; uridine phosphorylase 4780525 14484560 APECO78_22985 Escherichia coli APEC O78 uridine phosphorylase YP_007383758.1 4779764 D 1274814 CDS YP_007383759.1 443619903 14484561 4780666..4782093 1 NC_020163.1 COG1322 Uncharacterized protein conserved in bacteria; DNA recombination protein RmuC 4782093 14484561 APECO78_22990 Escherichia coli APEC O78 DNA recombination protein RmuC YP_007383759.1 4780666 D 1274814 CDS YP_007383760.1 443619904 14484562 4782188..4782943 1 NC_020163.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase 4782943 ubiE 14484562 ubiE Escherichia coli APEC O78 ubiquinone/menaquinone biosynthesis methyltransferase YP_007383760.1 4782188 D 1274814 CDS YP_007383761.1 443619905 14484563 4782957..4783562 1 NC_020163.1 COG3165 Uncharacterized protein conserved in bacteria; hypothetical protein 4783562 14484563 APECO78_23000 Escherichia coli APEC O78 hypothetical protein YP_007383761.1 4782957 D 1274814 CDS YP_007383762.1 443619906 14484564 4783559..4785199 1 NC_020163.1 COG0661 Predicted unusual protein kinase; ubiquinone biosynthesis protein UbiB 4785199 14484564 APECO78_23005 Escherichia coli APEC O78 ubiquinone biosynthesis protein UbiB YP_007383762.1 4783559 D 1274814 CDS YP_007383763.1 443619907 14484565 4785278..4785547 1 NC_020163.1 COG1826 Sec-independent protein secretion pathway components; twin arginine translocase protein A 4785547 tatA 14484565 tatA Escherichia coli APEC O78 twin arginine translocase protein A YP_007383763.1 4785278 D 1274814 CDS YP_007383764.1 443619908 14484566 4785551..4786066 1 NC_020163.1 COG1826 Sec-independent protein secretion pathway components; sec-independent translocase 4786066 14484566 APECO78_23015 Escherichia coli APEC O78 sec-independent translocase YP_007383764.1 4785551 D 1274814 CDS YP_007383765.1 443619909 14484567 4786069..4786845 1 NC_020163.1 COG0805 Sec-independent protein secretion pathway component TatC; twin-arginine protein translocation system subunit TatC 4786845 14484567 APECO78_23020 Escherichia coli APEC O78 twin-arginine protein translocation system subunit TatC YP_007383765.1 4786069 D 1274814 CDS YP_007383766.1 443619910 14484568 4786887..4787669 1 NC_020163.1 COG0084 Mg-dependent DNase; DNase TatD 4787669 14484568 APECO78_23025 Escherichia coli APEC O78 DNase TatD YP_007383766.1 4786887 D 1274814 CDS YP_007383767.1 443619911 14484569 complement(4787666..4788154) 1 NC_020163.1 COG0250 Transcription antiterminator; transcriptional activator RfaH 4788154 14484569 APECO78_23030 Escherichia coli APEC O78 transcriptional activator RfaH YP_007383767.1 4787666 R 1274814 CDS YP_007383768.1 443619912 14484570 4788321..4789814 1 NC_020163.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4-hydroxybenzoate decarboxylase 4789814 14484570 APECO78_23035 Escherichia coli APEC O78 3-octaprenyl-4-hydroxybenzoate decarboxylase YP_007383768.1 4788321 D 1274814 CDS YP_007383769.1 443619913 14484571 4789860..4790561 1 NC_020163.1 COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; FMN reductase 4790561 14484571 APECO78_23040 Escherichia coli APEC O78 FMN reductase YP_007383769.1 4789860 D 1274814 CDS YP_007383770.1 443619914 14484572 complement(4790745..4791908) 1 NC_020163.1 COG0183 Acetyl-CoA acetyltransferase; 3-ketoacyl-CoA thiolase 4791908 fadA 14484572 fadA Escherichia coli APEC O78 3-ketoacyl-CoA thiolase YP_007383770.1 4790745 R 1274814 CDS YP_007383771.1 443619915 14484573 complement(4791918..4794107) 1 NC_020163.1 COG1024 Enoyl-CoA hydratase/carnithine racemase; multifunctional fatty acid oxidation complex subunit alpha 4794107 fadB 14484573 fadB Escherichia coli APEC O78 multifunctional fatty acid oxidation complex subunit alpha YP_007383771.1 4791918 R 1274814 CDS YP_007383772.1 443619916 14484574 4794297..4795628 1 NC_020163.1 COG0006 Xaa-Pro aminopeptidase; proline dipeptidase 4795628 14484574 APECO78_23055 Escherichia coli APEC O78 proline dipeptidase YP_007383772.1 4794297 D 1274814 CDS YP_007383773.1 443619917 14484575 4795628..4796242 1 NC_020163.1 COG1739 Uncharacterized conserved protein; hypothetical protein 4796242 14484575 APECO78_23060 Escherichia coli APEC O78 hypothetical protein YP_007383773.1 4795628 D 1274814 CDS YP_007383774.1 443619918 14484576 4796281..4797732 1 NC_020163.1 COG0168 Trk-type K+ transport systems, membrane components; potassium transporter 4797732 14484576 APECO78_23065 Escherichia coli APEC O78 potassium transporter YP_007383774.1 4796281 D 1274814 CDS YP_007383775.1 443619919 14484577 4797744..4798289 1 NC_020163.1 COG4635 Flavodoxin; protoporphyrinogen oxidase 4798289 14484577 APECO78_23070 Escherichia coli APEC O78 protoporphyrinogen oxidase YP_007383775.1 4797744 D 1274814 CDS