-- dump date 20140619_080626 -- class Genbank::CDS -- table cds_note -- id note YP_006094360.1 see Tobe et al. 2006 PNAS 103 pp 14941-6 YP_006094395.1 Also similar (38.0% id) to EC042_0072; see Tobe et al. 2006 PNAS 103 pp 14941-6 YP_006094407.1 Also similar (38.0% id) to EC042_0060; see Tobe et al. 2006 PNAS 103 pp 14941-6 YP_006094418.1 unknown EC_number=2.1.1.-. YP_006094510.1 unknown EC_number=2.3.1.-. YP_006094577.1 Doubtful CDS YP_006094702.1 Doubtful CDS YP_006094807.1 unknown EC_number= YP_006094824.1 unknown EC_number= YP_006094914.1 No significant database matches. Weakly similar to clostridial protein YP_006094915.1 No significant database matches. Weakly similar to clostridial protein YP_006095142.1 no significant database matches YP_006095143.1 no significant database matches YP_006095147.1 no significant database matches YP_006095193.1 no significant database matches YP_006095427.1 unknown EC_number=2.1.-.-. YP_006095428.1 Doubtful CDS YP_006095430.1 unknown EC_number=2.4.1.-. YP_006095528.1 Doubtful CDS; no significant database matches YP_006095550.1 unknown EC_number=5.1.1.1. YP_006095552.1 no significant database matches YP_006095666.1 Doubtful CDS YP_006095698.1 unknown EC_number=4.2.1.20. YP_006095699.1 unknown EC_number=4.2.1.20. YP_006095753.1 unknown EC_number=1.11.1.-. YP_006095804.1 putative phage DNA methylase YP_006095826.1 putative prophge protein YP_006095894.1 weakly similar to E. coli TieB protein YP_006095912.1 similar to EC042_1600 (23.278% id) YP_006095913.1 similar to EC042_1599 (23.278% id) YP_006095916.1 selenoprotein. Contains a selenocysteine at codon 196 YP_006095952.1 Deletion event removed the N-terminal region of this CDS as well as an upstream CDS hipB YP_006095953.1 Deletion event removed the C-terminal region of this CDS (autotransporter domain) as well as a downstream CDS hipB YP_006096019.1 no significant database matches YP_006096027.1 no significant database matches YP_006096076.1 no significant database matches YP_006096264.1 Doubtful CDS; No significant database matches YP_006096331.1 Highly similar (70.19% id) to EC042_4769 YP_006096358.1 unknown EC_number=3.1.1.61. YP_006096424.1 deleted EC_number 2.1.1.73 YP_006096441.1 putative prophage protein YP_006096521.1 yersiniabactin siderophore biosynthetic protein YP_006096541.1 similar to EC042_3708/ggt YP_006096546.1 no significant database matches YP_006096550.1 no significant database matches YP_006096552.1 highly similar (87.199% id) to EC042_4511 YP_006096659.1 Similar (44.751% id) to the downstream CDS (EC042_2348) YP_006096660.1 Similar (44.751% id) to the upstream CDS (EC042_2347) YP_006096888.1 Doubtful CDS. No significant database matches YP_006097036.1 putative L-cysteine desulfurase YP_006097125.1 no significant database matches YP_006097154.1 Doubtful CDS; No significant database matches YP_006097280.1 Doubtful CDS. No significant database matches YP_006097295.1 Doubtful CDS YP_006097309.1 unknown EC_number= YP_006097323.1 Doubtful CDS. No significant database matches YP_006097448.1 unknown EC_number=3.1.-.-. YP_006097496.1 Doubtful CDS YP_006097503.1 Doubtful CDS. No significant database matches YP_006097638.1 Doubtful CDS. No significant database matches YP_006097651.1 Doubtful CDS. No significant database matches YP_006097732.1 Doubtful CDS; No significant database matches YP_006097753.1 Doubtful CDS; No significant database matches YP_006097919.1 putative fructoselysine transporter YP_006097993.1 similar to EC042_2234A YP_006098310.1 Highly similar (85.33% id) to EC042_4756A YP_006098342.1 Doubtful CDS YP_006098356.1 See Tobe et al. 2006. PNAS 103. pp 14941-6 YP_006098358.1 See Tobe et al. 2006. PNAS 103. pp 14941-6; Also similar to EC042_4073 YP_006098379.1 similar to puromycin N-acetyltransferase protein in Streptomyces anulatus ATCC 12461, GenBank Accession Number M25346 YP_006098393.1 Doubtful CDS YP_006098471.1 Doubtful CDS. No significant database matches YP_006098520.1 Doubtful CDS YP_006098660.1 See Tobe et al. 2006. PNAS 103. pp 14941-6 YP_006098681.1 putative phosphate starvation-inducible membrane protein YP_006098688.1 weakly similar to the listed database entry YP_006098779.1 Note that the majority of the other Database hits are significantly shorter than the predicted product for this CDS YP_006098783.1 no sys_id YP_006098784.1 no sys_id YP_006098789.1 known to control colony form variation and autoaggregation. may also function as an adhesin; highly similar (87.199% id) to EC042_2242 YP_006098792.1 Doubtful CDS. No significant database matches YP_006098818.1 Note the bias in amino acid content with a high incidence of Leu and Ala YP_006098823.1 Alternative possible translational start site at codon 5. Note database similarities are partial and to the N-terminus. YP_006098824.1 Note that the database similarities are only partial and that the N-terminus shows little similarity to any previously characterised protein. Note the Bacteriophage sequence similarities. YP_006098825.1 Note that the product of this CDS is similar to many proposed UvrD helicases. However, the level of similarity to the originally described UVRD_ECOLI helicase in low, but protein motif searches do appear to support this idea. YP_006098826.1 Similar to Escherichia coli hypothetical protein S13 s13 SWALL:AAQ19136 (EMBL:AY275838) (101 aa) fasta scores: E(): 2.2e-37, 89.1% id in 101 aa; Note the CDS s13 is located on the hybrid genomic island of the Verocytotoxin-Producing Escherichia coli CL3. Note also similar to PUI0078 YP_006098836.1 The N-terminal sequence of the product of this CDS has been experimentally verified.; No significant database matches YP_006098840.1 Note the central region of the predicted product of this CDS is similar to the central regions of several proteins thought to be Rhs elements. Since the central portion of Rhs elements is the most highly conserved region this is consistent with this product assignment. YP_006098842.1 Note the predicted product of this CDS carries several PARR (Pfam:PF05488) repeats, the function of which is currently unknown. YP_006098851.1 Doubtful CDS YP_006098853.1 Note this CDS carries a frameshift mutation, a premature stop codon and lacks the very C-terminus. YP_006098867.1 Note unusually most of the database hits are to Gram positive transposases. YP_006099001.1 Probable gene remnant. Similar to the N-terminal region of Escherichia coli O157:H7 hypothetical protein ecs1337 UniProt:Q7AFG8 (EMBL:BA000007) (141 aa) fasta scores: E()=4.3e-24, 81.707% id in 82 aa YP_006099002.1 Probable gene remnant. Similar to the C-terminal region of Escherichia coli putative transposase UniProt:Q8GJ16 (EMBL:ECO507494) (382 aa) fasta scores: E()=1.3e-10, 72.222% id in 36 aa YP_006099007.1 Highly similar (85.33% id) to EC042_4025/ilvN YP_006099013.1 Probable gene remnant. Similar to the C-terminal region of Ralstonia metallidurans CH34 zinc-containing alcohol dehydrogenase superfamily protein UniProt:Q3RLI5 (EMBL:AAAI03000011) (333 aa) fasta scores: E()=5.9e-15, 53.125% id in 96 aa YP_006099019.1 Highly similar (70.19% id) to EC042_2022 YP_006099041.1 no significant database matches YP_006099062.1 no significant database matches YP_006099139.1 no significant database matches YP_006099141.1 no significant database matches YP_006099177.1 no significant database matches YP_006099234.1 no significant database matches YP_006099235.1 possibly truncated at N-terminus relative to database match YP_006099246.1 no significant database matches