-- dump date 20140619_075059 -- class Genbank::CDS -- table cds_note -- id note YP_008822887.1 KO: K02313: chromosomal replication initiator protein; InterPro: IPR001957: Chromosomal replication control, initiator DnaA; IPR003593: ATPase, AAA+ type, core; IPR010921: Trp repressor/replication initiator; IPR013159: Chromosomal replication initiator, DnaA C-terminal; IPR013317: Chromosomal replication control, initiator (DnaA)/regulator (Hda); IPR018312: Chromosomal replication control, initiator DnaA, conserved site; IPR020591: Chromosomal replication control, initiator DnaA-like YP_008822888.1 KO: K02338: DNA polymerase III subunit beta [EC:2.7.7.7]; InterPro: IPR001001: DNA polymerase III, beta chain; IPR022634: DNA polymerase III, beta chain, N-terminal; IPR022635: DNA polymerase III, beta chain, C-terminal; IPR022637: DNA polymerase III, beta chain, central; IPR024693: DNA polymerase III beta, domain YP_008822889.1 InterPro: IPR002942: RNA-binding S4; IPR014330: RNA-binding S4-related,YaaA YP_008822890.1 KO: K03629: DNA replication and repair protein RecF; InterPro: IPR001238: DNA-binding, RecF; IPR003395: RecF/RecN/SMC; IPR018078: DNA-binding, RecF, conserved site YP_008822891.1 KO: K02470; InterPro: IPR000565: DNA topoisomerase, type IIA, subunit B; IPR001241: DNA topoisomerase, type IIA; IPR002288: DNA topoisomerase, type IIA, subunit B, C-terminal; IPR003594: ATPase-like, ATP-binding domain; IPR006171: Toprim domain; IPR011557: DNA gyrase, subunit B; IPR013506: DNA topoisomerase, type IIA, subunit B, domain 2; IPR013759: DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta; IPR013760: DNA topoisomerase, type IIA, central; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR018522: DNA topoisomerase, type IIA, conserved site; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008822892.1 KO: K02469; InterPro: IPR002205: DNA topoisomerase, type IIA, subunit A/C-terminal; IPR005743: DNA gyrase, subunit A; IPR006691: DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; IPR013757: DNA topoisomerase, type IIA, subunit A, alpha-helical; IPR013758: DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta; IPR013760: DNA topoisomerase, type IIA, central; IPR024946: Arginine repressor C-terminal-like domain YP_008822893.1 KO: K02990: small subunit ribosomal protein S6; InterPro: IPR000529: Ribosomal protein S6; IPR014717: Translation elongation factor EF1B/ribosomal protein S6; IPR020814: Ribosomal protein S6, plastid/chloroplast YP_008822894.1 KO: K03111: single-strand DNA-binding protein; InterPro: IPR000424: Primosome PriB/single-strand DNA-binding; IPR011344: Single-strand DNA-binding; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like YP_008822895.1 KO: K02963: small subunit ribosomal protein S18; InterPro: IPR001648: Ribosomal protein S18; IPR018275: Ribosomal protein S18, conserved site YP_008822896.1 InterPro: IPR000160: Diguanylate cyclase, predicted; IPR001667: Phosphoesterase, RecJ-like; IPR003156: Phosphoesterase, DHHA1; IPR014528: Signal transduction phosphoesterase predicted, YybT type YP_008822897.1 KO: K02939: large subunit ribosomal protein L9; InterPro: IPR000244: Ribosomal protein L9; IPR009027: Ribosomal protein L9/RNase H1, N-terminal; IPR020069: Ribosomal protein L9, C-terminal; IPR020070: Ribosomal protein L9, N-terminal; IPR020594: Ribosomal protein L9, bacteria/chloroplast YP_008822898.1 KO: K02314: replicative DNA helicase [EC:3.6.4.12]; InterPro: IPR007692: DNA helicase, DnaB type; IPR007693: DNA helicase, DnaB-like, N-terminal; IPR007694: DNA helicase, DnaB-like, C-terminal; IPR016136: DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal YP_008822899.1 KO: K01939: adenylosuccinate synthase [EC:6.3.4.4]; InterPro: IPR001114: Adenylosuccinate synthetase; IPR018220: Adenylosuccinate synthase, active site YP_008822900.1 InterPro: IPR003797: DegV YP_008822901.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core YP_008822903.1 KO: K00158: pyruvate oxidase [EC:1.2.3.3]; InterPro: IPR000399: TPP-binding enzyme, conserved site; IPR011766: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; IPR012000: Thiamine pyrophosphate enzyme, central domain; IPR012001: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; IPR014092: Pyruvate oxidase YP_008822904.1 KO: K00540; InterPro: IPR000683: Oxidoreductase, N-terminal; IPR004104: Oxidoreductase, C-terminal; IPR016040: NAD(P)-binding domain YP_008822905.1 KO: K07238; InterPro: IPR003689: Zinc/iron permease YP_008822907.1 InterPro: IPR010617: Protein of unknown function DUF1211, TMEM175 YP_008822910.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008822911.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008822912.1 InterPro: IPR000281: Helix-turn-helix protein RpiR; IPR001347: Sugar isomerase (SIS); IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008822913.1 InterPro: IPR004518: NTP pyrophosphohydrolase MazG, putative catalytic core; IPR011411: NTP Pyrophosphohydrolase MazG-related, Bacilli YP_008822915.1 KO: K06966; InterPro: IPR005269: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_008822916.1 InterPro: IPR013216: Methyltransferase type 11 YP_008822917.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008822918.1 InterPro: IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM; IPR023885: 4Fe4S-binding SPASM domain YP_008822920.1 KO: K02071: D-methionine transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008822921.1 KO: K02072: D-methionine transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008822922.1 KO: K02073: D-methionine transport system substrate-binding protein; InterPro: IPR004872: NLPA lipoprotein YP_008822923.1 InterPro: IPR003305: Carbohydrate-binding, CenC-like; IPR008979: Galactose-binding domain-like YP_008822925.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal; IPR009057: Homeodomain-like; IPR012287: Homeodomain-related YP_008822926.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008822928.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008822930.1 KO: K07185; InterPro: IPR004307: TspO/MBR-related protein YP_008822931.1 KO: K07707: two-component system, AgrA family, response regulator AgrA; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR007492: LytTr, DNA-binding domain; IPR011006: CheY-like superfamily YP_008822932.1 KO: K07706: two-component system, AgrA family, sensor histidine kinase AgrC [EC:2.7.13.-]; InterPro: IPR003594: ATPase-like, ATP-binding domain YP_008822934.1 InterPro: IPR003313: Transcription regulator HTH, AraC, arabinose-binding/dimerisation; IPR009057: Homeodomain-like; IPR012287: Homeodomain-related; IPR014710: RmlC-like jelly roll fold; IPR018060: Helix-turn-helix, AraC type, DNA binding; IPR018062: Helix-turn-helix, AraC type, subdomain 2; IPR020449: Transcription regulator HTH, AraC- type YP_008822935.1 KO: K10117: multiple sugar transport system substrate-binding protein; InterPro: IPR006059: Bacterial extracellular solute-binding, family 1 YP_008822936.1 KO: K10118: multiple sugar transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008822937.1 KO: K10119: multiple sugar transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008822938.1 KO: K01811; InterPro: IPR000322: Glycoside hydrolase, family 31; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR013785: Aldolase-type TIM barrel; IPR017853: Glycoside hydrolase, superfamily YP_008822939.1 InterPro: IPR002104: Integrase, catalytic; IPR011010: DNA breaking-rejoining enzyme, catalytic core; IPR013762: Integrase-like, catalytic core YP_008822942.1 InterPro: IPR012336: Thioredoxin-like fold; IPR013766: Thioredoxin domain YP_008822943.1 InterPro: IPR000727: Target SNARE coiled-coil domain YP_008822944.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008822945.1 KO: K01951: GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]; InterPro: IPR001674: GMP synthase, C-terminal; IPR004739: GMP synthase, N-terminal; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR017926: Glutamine amidotransferase type 1; IPR022310: NAD/GMP synthase; IPR022955: GMP synthase YP_008822946.1 KO: K00867: type I pantothenate kinase [EC:2.7.1.33]; InterPro: IPR004566: Bacterial pantothenate kinase; IPR006083: Phosphoribulokinase/uridine kinase YP_008822947.1 InterPro: IPR000847: Transcription regulator HTH, LysR; IPR005119: LysR, substrate-binding; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008822948.1 KO: K00564; InterPro: IPR007848: Methyltransferase small YP_008822949.1 KO: K02529; InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008822950.1 KO: K00756: pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]; InterPro: IPR000053: Pyrimidine-nucleoside phosphorylase; IPR000312: Glycosyl transferase, family 3; IPR013102: Pyrimidine nucleoside phosphorylase, C-terminal; IPR017459: Glycosyl transferase, family 3, N-terminal; IPR017872: Pyrimidine-nucleoside phosphorylase, conserved site; IPR018090: Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; IPR020072: Glycosyl transferase, family 3, subgroup, N-terminal YP_008822951.1 KO: K01619: deoxyribose-phosphate aldolase [EC:4.1.2.4]; InterPro: IPR002915: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; IPR011343: Deoxyribose-phosphate aldolase; IPR013785: Aldolase-type TIM barrel; IPR022979: Deoxyribose-phosphate aldolase, type 1 YP_008822952.1 KO: K01489: cytidine deaminase [EC:3.5.4.5]; InterPro: IPR002125: CMP/dCMP deaminase, zinc-binding; IPR006262: Cytidine deaminase, homotetrameric; IPR016193: Cytidine deaminase-like YP_008822953.1 KO: K07335; InterPro: IPR003760: Basic membrane lipoprotein YP_008822954.1 KO: K02056; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008822955.1 KO: K02057; InterPro: IPR001851: ABC transporter, permease YP_008822956.1 KO: K02057; InterPro: IPR001851: ABC transporter, permease YP_008822957.1 KO: K01839: phosphopentomutase [EC:5.4.2.7]; InterPro: IPR006124: Metalloenzyme; IPR010045: Phosphopentomutase; IPR017849: Alkaline phosphatase-like, alpha/beta/alpha; IPR017850: Alkaline-phosphatase-like, core domain; IPR024052: Phosphopentomutase DeoB cap domain YP_008822958.1 KO: K03783: purine-nucleoside phosphorylase [EC:2.4.2.1]; InterPro: IPR000845: Nucleoside phosphorylase domain; IPR001369: Purine phosphorylase, family 2; IPR011268: Inosine guanosine/xanthosine phosphorylase; IPR011270: Purine nucleoside phosphorylase I, inosine/guanosine-specific; IPR018099: Purine phosphorylase, family 2, conserved site YP_008822959.1 KO: K03784: purine-nucleoside phosphorylase [EC:2.4.2.1]; InterPro: IPR000845: Nucleoside phosphorylase domain; IPR004402: Purine nucleoside phosphorylase; IPR018017: Nucleoside phosphorylase YP_008822962.1 InterPro: IPR000792: Transcription regulator LuxR, C-terminal; IPR001789: Signal transduction response regulator, receiver domain; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008822963.1 KO: K01834: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1]; InterPro: IPR005952: Phosphoglycerate mutase 1; IPR013078: Histidine phosphatase superfamily, clade-1 YP_008822964.1 InterPro: IPR006119: Resolvase, N-terminal; IPR012287: Homeodomain-related YP_008822965.1 KO: K01807: ribose 5-phosphate isomerase A [EC:5.3.1.6]; InterPro: IPR004788: Ribose 5-phosphate isomerase, type A; IPR020672: Ribose-5-phosphate isomerase, type A, subgroup YP_008822966.1 KO: K02950: small subunit ribosomal protein S12; InterPro: IPR005679: Ribosomal protein S12, bacteria; IPR006032: Ribosomal protein S12/S23; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like YP_008822967.1 KO: K02992: small subunit ribosomal protein S7; InterPro: IPR000235: Ribosomal protein S7; IPR005717: Ribosomal protein S7, bacterial-type; IPR020606: Ribosomal protein S7, conserved site; IPR023798: Ribosomal protein S7 domain YP_008822968.1 KO: K02355; InterPro: IPR000640: Translation elongation factor EFG/EF2, C-terminal; IPR000795: Protein synthesis factor, GTP-binding; IPR004161: Translation elongation factor EFTu/EF1A, domain 2; IPR004540: Translation elongation factor EFG/EF2; IPR005225: Small GTP-binding protein domain; IPR005517: Translation elongation factor EFG/EF2, domain IV; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR009022: Elongation factor G/III/V; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008822969.1 KO: K02358: elongation factor Tu; InterPro: IPR000795: Protein synthesis factor, GTP-binding; IPR004160: Translation elongation factor EFTu/EF1A, C-terminal; IPR004161: Translation elongation factor EFTu/EF1A, domain 2; IPR004541: Translation elongation factor EFTu/EF1A, bacterial/organelle; IPR005225: Small GTP-binding protein domain; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR009001: Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YP_008822970.1 KO: K02946: small subunit ribosomal protein S10; InterPro: IPR001848: Ribosomal protein S10; IPR005731: Ribosomal protein S10 subgroup; IPR018268: Ribosomal protein S10, conserved site YP_008822971.1 KO: K02906: large subunit ribosomal protein L3; InterPro: IPR000597: Ribosomal protein L3; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR019926: Ribosomal protein L3, conserved site; IPR019927: Ribosomal protein L3, bacterial/organelle-type YP_008822972.1 KO: K02926: large subunit ribosomal protein L4; InterPro: IPR002136: Ribosomal protein L4/L1e; IPR013005: Ribosomal protein L4/L1e, bacterial-type; IPR023574: Ribosomal protein L4 domain YP_008822973.1 KO: K02892: large subunit ribosomal protein L23; InterPro: IPR001014: Ribosomal protein L23/L25, conserved site; IPR012677: Nucleotide-binding, alpha-beta plait; IPR012678: Ribosomal protein L23/L15e core domain; IPR013025: Ribosomal protein L25/L23 YP_008822974.1 KO: K02886: large subunit ribosomal protein L2; InterPro: IPR002171: Ribosomal protein L2; IPR005880: Ribosomal protein L2, bacterial-type; IPR008991: Translation protein SH3-like; IPR012340: Nucleic acid-binding, OB-fold; IPR014722: Translation protein SH3-like, subgroup; IPR014726: Ribosomal protein L2, domain 3; IPR016027: Nucleic acid-binding, OB-fold-like; IPR022666: Ribosomal Proteins L2, RNA binding domain; IPR022669: Ribosomal protein L2, C-terminal; IPR022671: Ribosomal protein L2, conserved site YP_008822975.1 KO: K02965: small subunit ribosomal protein S19; InterPro: IPR002222: Ribosomal protein S19/S15; IPR005732: Ribosomal protein S19, bacterial-type; IPR020934: Ribosomal protein S19 conserved site; IPR023575: Ribosomal protein S19, superfamily YP_008822976.1 KO: K02890: large subunit ribosomal protein L22; InterPro: IPR001063: Ribosomal protein L22/L17; IPR005727: Ribosomal protein L22, bacterial-type; IPR018260: Ribosomal protein L22/L17, conserved site YP_008822977.1 KO: K02982: small subunit ribosomal protein S3; InterPro: IPR001351: Ribosomal protein S3, C-terminal; IPR004044: K Homology, type 2; IPR004087: K Homology; IPR004088: K Homology, type 1; IPR005704: Ribosomal protein S3, bacterial; IPR008282: Ribosomal protein S3, N-terminal; IPR009019: K Homology, prokaryotic type; IPR015946: K homology domain-like, alpha/beta; IPR018280: Ribosomal protein S3, conserved site YP_008822978.1 KO: K02878: large subunit ribosomal protein L16; InterPro: IPR000114: Ribosomal protein L16; IPR016180: Ribosomal protein L10e/L16; IPR020798: Ribosomal protein L16, conserved site YP_008822979.1 KO: K02904: large subunit ribosomal protein L29; InterPro: IPR001854: Ribosomal protein L29; IPR018254: Ribosomal protein L29, conserved site YP_008822980.1 KO: K02961: small subunit ribosomal protein S17; InterPro: IPR000266: Ribosomal protein S17; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR019979: Ribosomal protein S17, conserved site; IPR019984: Ribosomal protein S17, bacterial-type YP_008822981.1 KO: K02874: large subunit ribosomal protein L14; InterPro: IPR000218: Ribosomal protein L14b/L23e; IPR005745: Ribosomal protein L14, bacterial-type; IPR019972: Ribosomal protein L14 conserved site; IPR023571: Ribosomal protein L14 domain YP_008822982.1 KO: K02895: large subunit ribosomal protein L24; InterPro: IPR003256: Ribosomal protein L24; IPR005824: KOW; IPR005825: Ribosomal protein L24/L26, conserved site; IPR008991: Translation protein SH3-like; IPR014723: Ribosomal protein L24, SH3-like YP_008822983.1 KO: K02931: large subunit ribosomal protein L5; InterPro: IPR002132: Ribosomal protein L5; IPR020929: Ribosomal protein L5, conserved site; IPR022803: Ribosomal protein L5 domain YP_008822984.1 KO: K02954: small subunit ribosomal protein S14; InterPro: IPR001209: Ribosomal protein S14; IPR018271: Ribosomal protein S14, conserved site YP_008822985.1 KO: K02994: small subunit ribosomal protein S8; InterPro: IPR000630: Ribosomal protein S8 YP_008822986.1 KO: K02933: large subunit ribosomal protein L6; InterPro: IPR000702: Ribosomal protein L6; IPR002358: Ribosomal protein L6, conserved site; IPR019906: Ribosomal protein L6, bacterial-type; IPR020040: Ribosomal protein L6, alpha-beta domain YP_008822987.1 KO: K02881: large subunit ribosomal protein L18; InterPro: IPR004389: Ribosomal protein L18, bacterial; IPR005484: Ribosomal protein L18/L5 YP_008822988.1 KO: K02988: small subunit ribosomal protein S5; InterPro: IPR000851: Ribosomal protein S5; IPR005324: Ribosomal protein S5, C-terminal; IPR005712: Ribosomal protein S5, bacterial-type; IPR013810: Ribosomal protein S5, N-terminal; IPR014720: Double-stranded RNA-binding-like; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR018192: Ribosomal protein S5, N-terminal, conserved site; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008822989.1 KO: K02907: large subunit ribosomal protein L30; InterPro: IPR005996: Ribosomal protein L30, bacterial-type; IPR016082: Ribosomal protein L30, ferredoxin-like fold domain; IPR018038: Ribosomal protein L30, conserved site YP_008822990.1 KO: K02876: large subunit ribosomal protein L15; InterPro: IPR001196: Ribosomal protein L15, conserved site; IPR005749: Ribosomal protein L15, bacterial-type; IPR021131: Ribosomal protein L18e/L15P YP_008822991.1 KO: K03076: preprotein translocase subunit SecY; InterPro: IPR002208: SecY protein; IPR023201: SecY subunit domain YP_008822992.1 KO: K00939: adenylate kinase [EC:2.7.4.3]; InterPro: IPR000850: Adenylate kinase; IPR006259: Adenylate kinase, subfamily; IPR007862: Adenylate kinase, active site lid domain YP_008822993.1 KO: K02518; InterPro: IPR004368: Translation initiation factor IF-1; IPR006196: RNA-binding domain, S1, IF1 type; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR022967: RNA-binding domain, S1 YP_008822994.1 KO: K02952: small subunit ribosomal protein S13; InterPro: IPR001892: Ribosomal protein S13; IPR010979: Ribosomal protein S13-like, H2TH; IPR018269: Ribosomal protein S13, conserved site; IPR019980: Ribosomal protein S13, bacterial-type YP_008822995.1 KO: K02948: small subunit ribosomal protein S11; InterPro: IPR001971: Ribosomal protein S11; IPR018102: Ribosomal S11, conserved site; IPR019981: Ribosomal protein S11, bacterial-type YP_008822996.1 KO: K03040: DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]; InterPro: IPR009025: DNA-directed RNA polymerase, RBP11-like; IPR011260: RNA polymerase, alpha subunit, C-terminal; IPR011261: DNA-directed RNA polymerase, dimerisation; IPR011262: DNA-directed RNA polymerase, insert domain; IPR011263: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; IPR011773: DNA-directed RNA polymerase, alpha subunit YP_008822997.1 KO: K02879: large subunit ribosomal protein L17; InterPro: IPR000456: Ribosomal protein L17 YP_008822998.1 KO: K02006: cobalt/nickel transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR015856: ABC transporter, cobalt import, CbiO; IPR017871: ABC transporter, conserved site; IPR022112: Cobalt ATP-binding cassette C-terminal YP_008822999.1 KO: K02006: cobalt/nickel transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR015856: ABC transporter, cobalt import, CbiO; IPR017871: ABC transporter, conserved site; IPR022112: Cobalt ATP-binding cassette C-terminal YP_008823000.1 KO: K02008: cobalt/nickel transport system permease protein; InterPro: IPR003339: ABC/ECF transporter, transmembrane component; IPR024919: ECF transporter transmembrane protein EcfT YP_008823001.1 KO: K06173; InterPro: IPR001406: Pseudouridine synthase I, TruA; IPR020094: Pseudouridine synthase I, TruA, N-terminal; IPR020095: Pseudouridine synthase I, TruA, C-terminal; IPR020097: Pseudouridine synthase I, TruA, alpha/beta domain; IPR020103: Pseudouridine synthase, catalytic domain YP_008823002.1 InterPro: IPR018580: Uncharacterised protein family YfhO YP_008823003.1 KO: K02902: large subunit ribosomal protein L28; InterPro: IPR001383: Ribosomal protein L28 YP_008823004.1 InterPro: IPR005531: Alkaline shock protein Asp23 YP_008823005.1 KO: K07030; InterPro: IPR004007: Dak phosphatase; IPR019986: DAK2 domain-containing protein YloV YP_008823006.1 KO: K03655: ATP-dependent DNA helicase RecG [EC:3.6.4.12]; InterPro: IPR001650: Helicase, C-terminal; IPR004609: DNA helicase, ATP-dependent, RecG; IPR011545: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; IPR014001: DEAD-like helicase; IPR016027: Nucleic acid-binding, OB-fold-like YP_008823007.1 KO: K03621: glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15]; InterPro: IPR003664: Fatty acid synthesis PlsX protein; IPR012281: Phospholipid biosynthesis protein, PlsX-like YP_008823008.1 KO: K02078; InterPro: IPR003231: Acyl carrier protein (ACP); IPR006163: Phosphopantetheine-binding; IPR009081: Acyl carrier protein-like YP_008823009.1 KO: K02031; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR010066: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; IPR013563: Oligopeptide/dipeptide ABC transporter, C-terminal; IPR017871: ABC transporter, conserved site YP_008823010.1 KO: K02032; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR013563: Oligopeptide/dipeptide ABC transporter, C-terminal; IPR017871: ABC transporter, conserved site YP_008823011.1 KO: K02033; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008823012.1 KO: K02034; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008823013.1 KO: K02035; InterPro: IPR000914: Bacterial extracellular solute-binding protein, family 5; IPR023765: Bacterial extracellular solute-binding protein, family 5, conserved site YP_008823015.1 InterPro: IPR006541: Bacteriocin-associated integral membrane protein YP_008823016.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823019.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010057: Transcription activator MutR, C-terminal; IPR010982: Lambda repressor-like, DNA-binding YP_008823020.1 KO: K03685: ribonuclease III [EC:3.1.26.3]; InterPro: IPR000999: Ribonuclease III; IPR001159: Double-stranded RNA-binding; IPR011907: Ribonuclease III, bacterial; IPR014720: Double-stranded RNA-binding-like YP_008823021.1 KO: K03529; InterPro: IPR003395: RecF/RecN/SMC; IPR010935: SMCs flexible hinge; IPR011890: Structural maintenance of chromosomes protein, prokaryotic YP_008823022.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR006379: HAD-superfamily hydrolase, subfamily IIB; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008823023.1 KO: K03110: fused signal recognition particle receptor; InterPro: IPR000897: Signal recognition particle, SRP54 subunit, GTPase; IPR003593: ATPase, AAA+ type, core; IPR004390: Cell division transporter substrate-binding protein FtsY; IPR013822: Signal recognition particle, SRP54 subunit, helical bundle YP_008823024.1 KO: K01919: glutamate--cysteine ligase [EC:6.3.2.2]; InterPro: IPR003806: ATP-grasp fold, DUF201-type; IPR006335: Glutamate--cysteine ligase-related; IPR007370: Glutamate--cysteine ligase; IPR011761: ATP-grasp fold; IPR013815: ATP-grasp fold, subdomain 1; IPR013816: ATP-grasp fold, subdomain 2 YP_008823025.1 InterPro: IPR012543: Protein of unknown function DUF1694 YP_008823026.1 KO: K02015: iron complex transport system permease protein; InterPro: IPR000522: ABC transporter, permease protein YP_008823027.1 KO: K02015: iron complex transport system permease protein; InterPro: IPR000522: ABC transporter, permease protein YP_008823028.1 KO: K02013: iron complex transport system ATP-binding protein [EC:3.6.3.34]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core YP_008823029.1 KO: K02016: iron complex transport system substrate-binding protein; InterPro: IPR002491: ABC transporter, periplasmic binding protein YP_008823032.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823033.1 InterPro: IPR000361: FeS cluster biogenesis YP_008823034.1 InterPro: IPR004843: Metallophosphoesterase domain; IPR022302: Phosphoesterase, putative YP_008823035.1 KO: K02440; InterPro: IPR000425: Major intrinsic protein; IPR012269: Aquaporin; IPR022357: Major intrinsic protein, conserved site; IPR023271: Aquaporin-like YP_008823036.1 InterPro: IPR007737: M trans-acting positive regulator YP_008823037.1 InterPro: IPR021361: Bacteriophage 16-3, p046 YP_008823038.1 KO: K00059: 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]; InterPro: IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR016040: NAD(P)-binding domain; IPR020904: Short-chain dehydrogenase/reductase, conserved site YP_008823040.1 KO: K03523; InterPro: IPR003784: BioY protein YP_008823041.1 KO: K02986: small subunit ribosomal protein S4; InterPro: IPR001912: Ribosomal protein S4/S9, N-terminal; IPR002942: RNA-binding S4; IPR005709: Ribosomal protein S4, bacterial-type; IPR018079: Ribosomal protein S4, conserved site; IPR022801: Ribosomal protein S4/S9 YP_008823042.1 InterPro: IPR000292: Formate/nitrite transporter YP_008823043.1 InterPro: IPR014825: DNA alkylation repair enzyme; IPR016024: Armadillo-type fold YP_008823044.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR006379: HAD-superfamily hydrolase, subfamily IIB; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008823045.1 KO: K09769; InterPro: IPR004843: Metallophosphoesterase domain; IPR005235: Conserved hypothetical protein CHP00282 YP_008823046.1 InterPro: IPR010368: Uncharacterised protein family UPF0342; IPR016783: Biofilm formation YmcA; IPR023378: YheA/YmcA-like domain YP_008823047.1 KO: K03555: DNA mismatch repair protein MutS; InterPro: IPR000432: DNA mismatch repair protein MutS, C-terminal; IPR005748: DNA mismatch repair protein MutS, type 1; IPR007695: DNA mismatch repair protein MutS-like, N-terminal; IPR007696: DNA mismatch repair protein MutS, core; IPR007860: DNA mismatch repair protein MutS, connector; IPR007861: DNA mismatch repair protein MutS, clamp; IPR016151: DNA mismatch repair protein MutS, N-terminal YP_008823048.1 KO: K03572: DNA mismatch repair protein MutL; InterPro: IPR002099: DNA mismatch repair protein; IPR003594: ATPase-like, ATP-binding domain; IPR013507: DNA mismatch repair protein, C-terminal; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR014762: DNA mismatch repair, conserved site; IPR014763: DNA mismatch repair protein, N-terminal; IPR014790: MutL, C-terminal, dimerisation; IPR020568: Ribosomal protein S5 domain 2-type fold; IPR020667: DNA mismatch repair protein, MutL YP_008823049.1 KO: K06287; InterPro: IPR003697: Maf-like protein YP_008823051.1 KO: K07305; InterPro: IPR002579: Methionine sulphoxide reductase B; IPR011057: Mss4-like YP_008823052.1 KO: K03486; InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR012770: Trehalose transcription repressor YP_008823053.1 KO: K07496; InterPro: IPR001959: Transposase, probable, IS891/IS1136/IS1341; IPR010095: Transposase IS605, OrfB, C-terminal; IPR021027: Transposase, putative, helix-turn-helix domain YP_008823054.1 InterPro: IPR006119: Resolvase, N-terminal YP_008823055.1 KO: K02819: PTS system, trehalose-specific IIC component; InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR011055: Duplicated hybrid motif; IPR011296: Phosphotransferase system, trehalose-specific IIBC component; IPR011535: Phosphotransferase system, glucose-like IIB component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008823056.1 KO: K03550: holliday junction DNA helicase RuvA [EC:3.6.4.12]; InterPro: IPR000085: Bacterial DNA recombination protein RuvA; IPR003583: Helix-hairpin-helix DNA-binding motif, class 1; IPR010994: RuvA domain 2-like; IPR011114: DNA helicase, Holliday junction RuvA type, domain III, C-terminal; IPR012340: Nucleic acid-binding, OB-fold; IPR013849: DNA helicase, Holliday junction RuvA type, domain I, bacterial; IPR016027: Nucleic acid-binding, OB-fold-like YP_008823057.1 KO: K03551: holliday junction DNA helicase RuvB [EC:3.6.4.12]; InterPro: IPR003593: ATPase, AAA+ type, core; IPR004605: DNA helicase, Holliday junction RuvB type; IPR008823: DNA helicase, Holliday junction RuvB type, C-terminal; IPR008824: DNA helicase, Holliday junction RuvB type, N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823058.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal YP_008823059.1 KO: K01104; InterPro: IPR000106: Protein-tyrosine phosphatase/arsenate reductase; IPR017867: Protein-tyrosine phosphatase, low molecular weight; IPR023485: Phosphotyrosine protein phosphatase I superfamily YP_008823061.1 KO: K03311; InterPro: IPR004685: Branched-chain amino acid transport system II carrier protein YP_008823062.1 KO: K02028; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823063.1 KO: K02029; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR001638: Extracellular solute-binding protein, family 3; IPR010065: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YP_008823065.1 KO: K12410: NAD-dependent deacetylase [EC:3.5.1.-]; InterPro: IPR003000: NAD-dependent deacetylase, sirtuin family YP_008823066.1 KO: K00661; InterPro: IPR001451: Bacterial transferase hexapeptide repeat; IPR002701: Chorismate mutase; IPR011004: Trimeric LpxA-like; IPR011279: Chorismate mutase, Gram-positive; IPR020822: Chorismate mutase, type II; IPR024688: Maltose/galactoside acetyltransferase YP_008823067.1 KO: K07105; InterPro: IPR004173: 3H domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008823071.1 KO: K01462; InterPro: IPR000181: Formylmethionine deformylase; IPR023635: Peptide deformylase YP_008823072.1 KO: K02956: small subunit ribosomal protein S15; InterPro: IPR000589: Ribosomal protein S15; IPR005290: Ribosomal protein S15, bacterial-type; IPR009068: S15/NS1, RNA-binding YP_008823073.1 KO: K00962: polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]; InterPro: IPR001247: Exoribonuclease, phosphorolytic domain 1; IPR003029: Ribosomal protein S1, RNA-binding domain; IPR004087: K Homology; IPR004088: K Homology, type 1; IPR012162: Polyribonucleotide nucleotidyltransferase; IPR012340: Nucleic acid-binding, OB-fold; IPR015847: Exoribonuclease, phosphorolytic domain 2; IPR015848: Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; IPR016027: Nucleic acid-binding, OB-fold-like; IPR018111: K Homology, type 1, subgroup; IPR020568: Ribosomal protein S5 domain 2-type fold; IPR022967: RNA-binding domain, S1 YP_008823074.1 InterPro: IPR007341: Transglycosylase-associated protein YP_008823075.1 KO: K03549; InterPro: IPR003855: K+ potassium transporter; IPR023051: Potassium uptake protein, low affinity, Kup YP_008823076.1 InterPro: IPR000644: Cystathionine beta-synthase, core; IPR002550: Domain of unknown function DUF21; IPR005170: Transporter-associated domain; IPR016169: CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YP_008823077.1 InterPro: IPR002528: Multi antimicrobial extrusion protein; IPR015522: Na+ driven multidrug efflux pump YP_008823078.1 InterPro: IPR009303: Protein of unknown function DUF960 YP_008823079.1 KO: K02897: large subunit ribosomal protein L25; InterPro: IPR001021: Ribosomal protein L25, long-form; IPR011035: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain; IPR020055: Ribosomal protein L25, short-form; IPR020056: Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain; IPR020057: Ribosomal protein L25, beta domain YP_008823080.1 InterPro: IPR000748: Pseudouridine synthase, RsuA/RluB/E/F; IPR002942: RNA-binding S4; IPR006145: Pseudouridine synthase, RsuA and RluB/C/D/E/F; IPR020103: Pseudouridine synthase, catalytic domain YP_008823081.1 InterPro: IPR007337: RelB antitoxin YP_008823082.1 InterPro: IPR003477: PemK-like protein YP_008823083.1 KO: K07025; InterPro: IPR005834: Haloacid dehalogenase-like hydrolase; IPR006439: HAD-superfamily hydrolase, subfamily IA, variant 1; IPR011951: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; IPR023214: HAD-like domain YP_008823084.1 KO: K00876: uridine kinase [EC:2.7.1.48]; InterPro: IPR000764: Uridine kinase; IPR006083: Phosphoribulokinase/uridine kinase YP_008823085.1 InterPro: IPR015414: SNARE associated Golgi protein YP_008823086.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823088.1 KO: K09768; InterPro: IPR003791: Protein of unknown function DUF188 YP_008823089.1 InterPro: IPR019649: Protein of unknown function DUF2512 YP_008823090.1 KO: K03688: ubiquinone biosynthesis protein; InterPro: IPR004147: ABC-1; IPR011009: Protein kinase-like domain YP_008823091.1 KO: K01921: D-alanine-D-alanine ligase [EC:6.3.2.4]; InterPro: IPR000291: D-alanine--D-alanine ligase/VANA/B/C, conserved site; IPR005905: D-alanine--D-alanine ligase; IPR011095: D-alanine--D-alanine ligase, C-terminal; IPR011127: D-alanine--D-alanine ligase, N-terminal; IPR011761: ATP-grasp fold; IPR013815: ATP-grasp fold, subdomain 1; IPR013816: ATP-grasp fold, subdomain 2; IPR013817: Pre-ATP-grasp fold; IPR016185: PreATP-grasp-like fold YP_008823092.1 KO: K01929: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]; InterPro: IPR000713: Mur ligase, N-terminal; IPR004101: Mur ligase, C-terminal; IPR005863: UDP-MurNAc-pentapeptide synthetase; IPR013221: Mur ligase, central YP_008823093.1 KO: K05592: ATP-dependent RNA helicase DeaD [EC:3.6.4.13]; InterPro: IPR000629: RNA helicase, ATP-dependent, DEAD-box, conserved site; IPR001650: Helicase, C-terminal; IPR011545: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; IPR014001: DEAD-like helicase; IPR014014: RNA helicase, DEAD-box type, Q motif YP_008823094.1 KO: K00997: holo-[acyl-carrier protein] synthase [EC:2.7.8.7]; InterPro: IPR002582: Holo-[acyl carrier protein] synthase; IPR004568: Phosphopantethiene-protein transferase; IPR008278: 4'-phosphopantetheinyl transferase YP_008823095.1 KO: K01775: alanine racemase [EC:5.1.1.1]; InterPro: IPR000821: Alanine racemase; IPR001608: Alanine racemase, N-terminal; IPR009006: Alanine racemase/group IV decarboxylase, C-terminal; IPR011079: Alanine racemase, C-terminal; IPR020622: Alanine racemase, pyridoxal-phosphate attachment site YP_008823096.1 KO: K07171; InterPro: IPR003477: PemK-like protein; IPR011067: Plasmid maintenance toxin/Cell growth inhibitor YP_008823097.1 KO: K01421; InterPro: IPR013525: ABC-2 type transporter; IPR017500: Phage infection protein, YhgE, N-terminal; IPR017501: Phage infection protein, YhgE, C-terminal YP_008823098.1 InterPro: IPR002293: Amino acid/polyamine transporter I YP_008823100.1 InterPro: IPR003477: PemK-like protein; IPR011067: Plasmid maintenance toxin/Cell growth inhibitor YP_008823101.1 KO: K05846: osmoprotectant transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008823102.1 KO: K05845: osmoprotectant transport system substrate-binding protein; InterPro: IPR007210: ABC-type glycine betaine transport system, substrate-binding domain YP_008823103.1 KO: K05846: osmoprotectant transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008823104.1 KO: K05847: osmoprotectant transport system ATP-binding protein; InterPro: IPR000644: Cystathionine beta-synthase, core; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR005892: Glycine betaine/L-proline transport ATP-binding subunit; IPR017871: ABC transporter, conserved site YP_008823105.1 KO: K07568; InterPro: IPR003699: Queuosine biosynthesis protein YP_008823106.1 InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR004014: ATPase, P-type cation-transporter, N-terminal; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006068: ATPase, P-type cation-transporter, C-terminal; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A; IPR023306: ATPase, cation-transporting, domain N YP_008823107.1 InterPro: IPR010380: Protein of unknown function DUF975 YP_008823108.1 KO: K00773; InterPro: IPR002616: Queuine/other tRNA-ribosyltransferase; IPR004803: Queuine tRNA-ribosyltransferase YP_008823109.1 KO: K03210: preprotein translocase subunit YajC; InterPro: IPR003849: Preprotein translocase YajC YP_008823110.1 KO: K04072: acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]; InterPro: IPR001670: Alcohol dehydrogenase, iron-type; IPR012079: Bifunctional aldehyde/alcohol dehydrogenase; IPR015590: Aldehyde dehydrogenase domain; IPR016161: Aldehyde/histidinol dehydrogenase; IPR016162: Aldehyde dehydrogenase, N-terminal; IPR016163: Aldehyde dehydrogenase, C-terminal; IPR018211: Alcohol dehydrogenase, iron-type, conserved site YP_008823112.1 KO: K15532; InterPro: IPR008928: Six-hairpin glycosidase-like; IPR010905: Glycosyl hydrolase, family 88; IPR012341: Six-hairpin glycosidase YP_008823113.1 InterPro: IPR008928: Six-hairpin glycosidase-like; IPR010905: Glycosyl hydrolase, family 88; IPR012341: Six-hairpin glycosidase YP_008823114.1 InterPro: IPR004682: TRAP dicarboxylate transporter, DctP subunit; IPR018389: Extracellular solute-binding protein, family 7, bacteria YP_008823115.1 InterPro: IPR007387: Tripartite ATP-independent periplasmic transporter, DctQ component YP_008823116.1 InterPro: IPR004681: TRAP dicarboxylate transporter, DctM subunit; IPR010656: TRAP C4-dicarboxylate transport system permease DctM subunit YP_008823117.1 InterPro: IPR012307: Xylose isomerase, TIM barrel domain; IPR013022: Xylose isomerase-like, TIM barrel domain YP_008823118.1 InterPro: IPR003313: Transcription regulator HTH, AraC, arabinose-binding/dimerisation; IPR009057: Homeodomain-like; IPR012287: Homeodomain-related; IPR018060: Helix-turn-helix, AraC type, DNA binding YP_008823119.1 InterPro: IPR005471: Transcription regulator IclR, N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR014757: Transcription regulator IclR, C-terminal YP_008823120.1 KO: K01625: 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]; InterPro: IPR000887: KDPG/KHG aldolase; IPR013785: Aldolase-type TIM barrel YP_008823121.1 KO: K00874: 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]; InterPro: IPR011611: Carbohydrate/purine kinase YP_008823122.1 KO: K01815: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]; InterPro: IPR007045: 5-keto 4-deoxyuronate isomerase; IPR011051: Cupin, RmlC-type; IPR021120: KduI/IolB isomerase YP_008823123.1 KO: K00046; InterPro: IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR016040: NAD(P)-binding domain; IPR020904: Short-chain dehydrogenase/reductase, conserved site YP_008823124.1 KO: K01823: isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2]; InterPro: IPR000262: FMN-dependent dehydrogenase; IPR011179: Isopentenyl-diphosphate delta-isomerase, FMN-dependent; IPR013785: Aldolase-type TIM barrel YP_008823125.1 KO: K00938: phosphomevalonate kinase [EC:2.7.4.2]; InterPro: IPR005917: Phosphomevalonate kinase, Gram-positive; IPR006204: GHMP kinase; IPR006206: Mevalonate/galactokinase; IPR013750: GHMP kinase, C-terminal; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008823126.1 KO: K01597: diphosphomevalonate decarboxylase [EC:4.1.1.33]; InterPro: IPR005935: Diphosphomevalonate decarboxylase; IPR006204: GHMP kinase; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008823127.1 KO: K00869: mevalonate kinase [EC:2.7.1.36]; InterPro: IPR006204: GHMP kinase; IPR006205: Mevalonate kinase; IPR006206: Mevalonate/galactokinase; IPR013750: GHMP kinase, C-terminal; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008823128.1 InterPro: IPR002624: Deoxynucleoside kinase YP_008823129.1 InterPro: IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR004302: Chitin-binding, domain 3; IPR013783: Immunoglobulin-like fold; IPR014756: Immunoglobulin E-set YP_008823130.1 KO: K03933; InterPro: IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR004302: Chitin-binding, domain 3; IPR013783: Immunoglobulin-like fold; IPR014756: Immunoglobulin E-set YP_008823131.1 KO: K02520; InterPro: IPR001288: Translation initiation factor 3; IPR019813: Translation initiation factor 3, conserved site; IPR019814: Translation initiation factor 3, N-terminal; IPR019815: Translation initiation factor 3, C-terminal YP_008823132.1 KO: K02916: large subunit ribosomal protein L35; InterPro: IPR001706: Ribosomal protein L35, non-mitochondrial; IPR018265: Ribosomal protein L35, conserved site; IPR021137: Ribosomal protein L35 YP_008823133.1 KO: K02887: large subunit ribosomal protein L20; InterPro: IPR005813: Ribosomal protein L20 YP_008823135.1 InterPro: IPR002821: Hydantoinase/oxoprolinase; IPR008040: Hydantoinaseoxoprolinase, N-terminal YP_008823137.1 InterPro: IPR011711: GntR, C-terminal YP_008823139.1 KO: K07107; InterPro: IPR006683: Thioesterase superfamily; IPR006684: 4-hydroxybenzoyl-CoA thioesterase YP_008823140.1 InterPro: IPR000631: Uncharacterised domain, carbohydrate kinase-related; IPR017953: Carbohydrate kinase, predicted, conserved site YP_008823141.1 InterPro: IPR001261: ArgE/DapE/ACY1/CPG2/YscS, conserved site; IPR002933: Peptidase M20; IPR010964: Peptidase M20A, peptidase V-related; IPR011291: Peptidase M20A, peptidase V; IPR011650: Peptidase M20, dimerisation YP_008823142.1 KO: K03492; InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823143.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008823144.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily YP_008823147.1 InterPro: IPR012544: Protein of unknown function DUF1696; IPR023363: BPHL domain YP_008823148.1 KO: K00135: succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]; InterPro: IPR015590: Aldehyde dehydrogenase domain; IPR016161: Aldehyde/histidinol dehydrogenase; IPR016162: Aldehyde dehydrogenase, N-terminal; IPR016163: Aldehyde dehydrogenase, C-terminal YP_008823151.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823152.1 InterPro: IPR005075: Peptidase M4, propeptide, PepSY YP_008823153.1 KO: K01261; InterPro: IPR008007: Peptidase M42; IPR017538: Peptidase M42, glutamyl aminopeptidase; IPR023367: Peptidase M42, domain 2 YP_008823154.1 InterPro: IPR005746: Thioredoxin; IPR012336: Thioredoxin-like fold; IPR013766: Thioredoxin domain YP_008823155.1 InterPro: IPR006015: Universal stress protein A; IPR006016: UspA; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008823156.1 KO: K06878; InterPro: IPR002547: tRNA-binding domain; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like YP_008823157.1 KO: K01362; InterPro: IPR001254: Peptidase S1/S6, chymotrypsin/Hap; IPR001478: PDZ/DHR/GLGF; IPR001940: Peptidase S1C, HrtA/DegP2/Q/S; IPR009003: Peptidase cysteine/serine, trypsin-like YP_008823158.1 KO: K00783; InterPro: IPR003742: SPOUT methyltransferase, predicted; IPR016051: Ribosomal RNA large subunit methyltransferase H YP_008823160.1 InterPro: IPR006829: Transposase, Gram-positive bacteria YP_008823164.1 KO: K07862; InterPro: IPR001991: Sodium: dicarboxylate symporter; IPR023025: Serine/threonine transporter SstT YP_008823165.1 InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR007737: M trans-acting positive regulator; IPR011608: PRD; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR016152: Phosphotransferase/anion transporter YP_008823166.1 InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR016152: Phosphotransferase/anion transporter YP_008823167.1 KO: K02822: PTS system, ascorbate-specific IIB component [EC:2.7.1.69]; InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2 YP_008823168.1 InterPro: IPR004703: Phosphotransferase system, sugar-specific permease component YP_008823169.1 InterPro: IPR001347: Sugar isomerase (SIS) YP_008823171.1 KO: K03483; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR007737: M trans-acting positive regulator; IPR011608: PRD; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013196: Helix-turn-helix, type 11; IPR016152: Phosphotransferase/anion transporter YP_008823172.1 KO: K02822: PTS system, ascorbate-specific IIB component [EC:2.7.1.69]; InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2 YP_008823173.1 KO: K03475: PTS system, ascorbate-specific IIC component; InterPro: IPR004703: Phosphotransferase system, sugar-specific permease component YP_008823174.1 InterPro: IPR011990: Tetratricopeptide-like helical; IPR013026: Tetratricopeptide repeat-containing; IPR019734: Tetratricopeptide repeat YP_008823175.1 KO: K01624: fructose-bisphosphate aldolase, class II [EC:4.1.2.13]; InterPro: IPR000771: Ketose-bisphosphate aldolase, class-II; IPR013785: Aldolase-type TIM barrel YP_008823176.1 InterPro: IPR010488: Zeta toxin domain YP_008823177.1 InterPro: IPR013094: Alpha/beta hydrolase fold-3 YP_008823178.1 InterPro: IPR012914: Purine catabolism PurC-like YP_008823179.1 InterPro: IPR003781: CoA-binding; IPR005811: ATP-citrate lyase/succinyl-CoA ligase; IPR009499: Protein of unknown function DUF1116; IPR016102: Succinyl-CoA synthetase-like; IPR024033: Uncharacterised domain, YlbE YP_008823180.1 InterPro: IPR021530: Protein of unknown function DUF2877 YP_008823181.1 InterPro: IPR005829: Sugar transporter, conserved site; IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008823182.1 KO: K00926: carbamate kinase [EC:2.7.2.2]; InterPro: IPR001048: Aspartate/glutamate/uridylate kinase; IPR003964: Bacterial carbamate kinase YP_008823183.1 InterPro: IPR001991: Sodium: dicarboxylate symporter YP_008823184.1 KO: K02755: PTS system, beta-glucosides-specific IIA component [EC:2.7.1.69]; InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR011055: Duplicated hybrid motif; IPR011297: Phosphotransferase system, beta-glucoside-specific IIABC component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008823185.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008823186.1 KO: K03488; InterPro: IPR004341: CAT RNA-binding domain; IPR011608: PRD YP_008823187.1 KO: K00077: 2-dehydropantoate 2-reductase [EC:1.1.1.169]; InterPro: IPR003710: Ketopantoate reductase ApbA/PanE; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR013328: Dehydrogenase, multihelical; IPR013332: Ketopantoate reductase ApbA/PanE, N-terminal; IPR013752: Ketopantoate reductase ApbA/PanE, C-terminal; IPR016040: NAD(P)-binding domain YP_008823188.1 KO: K07035 YP_008823189.1 InterPro: IPR001406: Pseudouridine synthase I, TruA; IPR020094: Pseudouridine synthase I, TruA, N-terminal; IPR020095: Pseudouridine synthase I, TruA, C-terminal; IPR020097: Pseudouridine synthase I, TruA, alpha/beta domain; IPR020103: Pseudouridine synthase, catalytic domain YP_008823190.1 KO: K07304; InterPro: IPR002569: Peptide methionine sulphoxide reductase MsrA; IPR015046: Enterocin A Immunity YP_008823191.1 InterPro: IPR001395: Aldo/keto reductase; IPR005399: Potassium channel, voltage-dependent, beta subunit, KCNAB-related; IPR023210: NADP-dependent oxidoreductase domain YP_008823192.1 InterPro: IPR019757: Peptidase S26A, signal peptidase I, lysine active site; IPR019759: Peptidase S24/S26A/S26B YP_008823193.1 KO: K02760: PTS system, cellobiose-specific IIB component [EC:2.7.1.69]; InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013012: Phosphotransferase system, EIIB component, type 3 YP_008823194.1 KO: K02759: PTS system, cellobiose-specific IIA component [EC:2.7.1.69]; InterPro: IPR003188: Phosphotransferase system, lactose/cellobiose-specific IIA subunit YP_008823195.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008823196.1 InterPro: IPR007351: Protein of unknown function DUF419 YP_008823197.1 InterPro: IPR013216: Methyltransferase type 11 YP_008823199.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823201.1 KO: K00121: S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]; InterPro: IPR002085: Alcohol dehydrogenase superfamily, zinc-type; IPR002328: Alcohol dehydrogenase, zinc-type, conserved site; IPR011032: GroES-like; IPR013149: Alcohol dehydrogenase, C-terminal; IPR013154: Alcohol dehydrogenase GroES-like; IPR016040: NAD(P)-binding domain YP_008823203.1 KO: K10254; InterPro: IPR010354: Streptococcal 67kDa myosin-cross-reactive antigen-like YP_008823205.1 KO: K09952; InterPro: IPR010145: CRISPR-associated protein, SAG0894 YP_008823206.1 InterPro: IPR002729: CRISPR-associated protein Cas1; IPR019855: CRISPR-associated protein Cas1, NMENI subtype YP_008823207.1 KO: K09951; InterPro: IPR019199: Virulence-associated protein D / CRISPR associated protein Cas2; IPR021127: CRISPR associated protein Cas2 YP_008823208.1 InterPro: IPR010146: CRISPR-associated protein, Csn2-type YP_008823209.1 InterPro: IPR012427: Protein of unknown function DUF1622 YP_008823210.1 InterPro: IPR012427: Protein of unknown function DUF1622 YP_008823212.1 InterPro: IPR002129: Pyridoxal phosphate-dependent decarboxylase; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015424: Pyridoxal phosphate-dependent transferase, major domain; IPR021115: Pyridoxal-phosphate binding site; IPR022397: Tyrosine decarboxylase, bacteria YP_008823213.1 InterPro: IPR002293: Amino acid/polyamine transporter I; IPR004841: Amino acid permease domain YP_008823214.1 KO: K01529; InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR004014: ATPase, P-type cation-transporter, N-terminal; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006068: ATPase, P-type cation-transporter, C-terminal; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008823215.1 InterPro: IPR002560: Transposase, IS204/IS1001/IS1096/IS1165 YP_008823216.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013199: Helix-turn-helix Mga, DNA-binding trans-acting positive regulator YP_008823217.1 InterPro: IPR000086: NUDIX hydrolase domain; IPR015797: NUDIX hydrolase domain-like YP_008823218.1 InterPro: IPR000835: Transcription regulator HTH, MarR-type; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR023187: Transcriptional regulator MarR-type, conserved site YP_008823219.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823220.1 InterPro: IPR005146: B3/B4 tRNA-binding domain; IPR020825: Phenylalanyl-tRNA synthetase, B3/B4 YP_008823223.1 KO: K06901; InterPro: IPR006043: Xanthine/uracil/vitamin C permease YP_008823227.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal YP_008823228.1 KO: K07459 YP_008823229.1 InterPro: IPR000212: DNA helicase, UvrD/REP type; IPR014016: Helicase, superfamily 1, UvrD-related YP_008823230.1 KO: K01215; InterPro: IPR006047: Glycosyl hydrolase, family 13, catalytic domain; IPR006589: Glycosyl hydrolase, family 13, subfamily, catalytic domain; IPR013780: Glycosyl hydrolase, family 13, all-beta; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR015902: Alpha amylase; IPR017853: Glycoside hydrolase, superfamily YP_008823231.1 InterPro: IPR000835: Transcription regulator HTH, MarR-type; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823232.1 InterPro: IPR001155: NADH: flavin oxidoreductase/NADH oxidase, N-terminal; IPR013785: Aldolase-type TIM barrel YP_008823233.1 InterPro: IPR002818: ThiJ/PfpI YP_008823234.1 InterPro: IPR001395: Aldo/keto reductase; IPR018170: Aldo/keto reductase, conserved site; IPR020471: Aldo/keto reductase subgroup; IPR023210: NADP-dependent oxidoreductase domain YP_008823236.1 InterPro: IPR003838: Permease FtsX-like YP_008823237.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823238.1 KO: K02005 YP_008823239.1 KO: K07644: two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008823240.1 KO: K02483; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823241.1 InterPro: IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR004099: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR016156: FAD/NAD-linked reductase, dimerisation; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008823242.1 InterPro: IPR007737: M trans-acting positive regulator YP_008823243.1 KO: K00864: glycerol kinase [EC:2.7.1.30]; InterPro: IPR000577: Carbohydrate kinase, FGGY; IPR005999: Glycerol kinase; IPR018483: Carbohydrate kinase, FGGY, conserved site; IPR018484: Carbohydrate kinase, FGGY, N-terminal; IPR018485: Carbohydrate kinase, FGGY, C-terminal YP_008823244.1 KO: K00111: glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]; InterPro: IPR000447: FAD-dependent glycerol-3-phosphate dehydrogenase; IPR006076: FAD dependent oxidoreductase YP_008823245.1 KO: K02440; InterPro: IPR000425: Major intrinsic protein; IPR022357: Major intrinsic protein, conserved site; IPR023271: Aquaporin-like YP_008823246.1 KO: K00048: lactaldehyde reductase [EC:1.1.1.77]; InterPro: IPR001670: Alcohol dehydrogenase, iron-type; IPR013460: Lactaldehyde reductase; IPR018211: Alcohol dehydrogenase, iron-type, conserved site YP_008823247.1 KO: K00661; InterPro: IPR001451: Bacterial transferase hexapeptide repeat; IPR011004: Trimeric LpxA-like; IPR024688: Maltose/galactoside acetyltransferase YP_008823248.1 KO: K01629: rhamnulose-1-phosphate aldolase [EC:4.1.2.19]; InterPro: IPR001303: Class II aldolase/adducin N-terminal; IPR013447: Rhamnulose-1-phosphate aldolase YP_008823249.1 KO: K01813: L-rhamnose isomerase [EC:5.3.1.14]; InterPro: IPR009308: Rhamnose isomerase; IPR013022: Xylose isomerase-like, TIM barrel domain YP_008823250.1 KO: K00848: rhamnulokinase [EC:2.7.1.5]; InterPro: IPR000577: Carbohydrate kinase, FGGY; IPR013449: Rhamnulokinase; IPR018484: Carbohydrate kinase, FGGY, N-terminal; IPR018485: Carbohydrate kinase, FGGY, C-terminal YP_008823251.1 InterPro: IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008823252.1 InterPro: IPR003313: Transcription regulator HTH, AraC, arabinose-binding/dimerisation; IPR009057: Homeodomain-like; IPR012287: Homeodomain-related; IPR014710: RmlC-like jelly roll fold; IPR018060: Helix-turn-helix, AraC type, DNA binding; IPR018062: Helix-turn-helix, AraC type, subdomain 2; IPR020449: Transcription regulator HTH, AraC- type YP_008823253.1 InterPro: IPR006542: Conserved hypothetical protein CHP01655 YP_008823254.1 InterPro: IPR000432: DNA mismatch repair protein MutS, C-terminal; IPR005747: DNA mismatch repair protein MutS, type 2; IPR007696: DNA mismatch repair protein MutS, core YP_008823255.1 InterPro: IPR000462: CDP-alcohol phosphatidyltransferase; IPR004570: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_008823257.1 InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008823258.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR006379: HAD-superfamily hydrolase, subfamily IIB; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008823259.1 InterPro: IPR003735: Protein of unknown function DUF156 YP_008823260.1 InterPro: IPR001763: Rhodanese-like YP_008823261.1 KO: K00359; InterPro: IPR001763: Rhodanese-like; IPR004099: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR016156: FAD/NAD-linked reductase, dimerisation; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008823263.1 KO: K02802: PTS system, N-acetylglucosamine-specific IIA component [EC:2.7.1.69]; InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR010974: Phosphotransferase system, N-acetylglucosamine-specific IIBC component; IPR011055: Duplicated hybrid motif; IPR011535: Phosphotransferase system, glucose-like IIB component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008823264.1 InterPro: IPR002765: Uncharacterised protein family UPF0145 YP_008823265.1 InterPro: IPR004701: Phosphotransferase system, fructose subfamily IIA component; IPR012844: Dihydroxyacetone kinase, subunit phosphotransferase YP_008823266.1 KO: K05878: dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-]; InterPro: IPR004006: Dak kinase; IPR012736: Dihydroxyacetone kinase DhaK, subunit 1 YP_008823267.1 KO: K05879: dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-]; InterPro: IPR004007: Dak phosphatase; IPR012737: Dihydroxyacetone kinase, subunit L YP_008823269.1 KO: K01866: tyrosyl-tRNA synthetase [EC:6.1.1.1]; InterPro: IPR001412: Aminoacyl-tRNA synthetase, class I, conserved site; IPR002305: Aminoacyl-tRNA synthetase, class Ic; IPR002307: Tyrosyl-tRNA synthetase; IPR002942: RNA-binding S4; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR024088: Tyrosyl-tRNA synthetase, bacterial-type; IPR024107: Tyrosyl-tRNA synthetase, bacterial-type, type 1 YP_008823270.1 InterPro: IPR002129: Pyridoxal phosphate-dependent decarboxylase; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015424: Pyridoxal phosphate-dependent transferase, major domain; IPR022397: Tyrosine decarboxylase, bacteria YP_008823271.1 InterPro: IPR002293: Amino acid/polyamine transporter I; IPR004841: Amino acid permease domain YP_008823272.1 KO: K02529; InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008823273.1 KO: K01785: aldose 1-epimerase [EC:5.1.3.3]; InterPro: IPR008183: Aldose 1-epimerase; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR014718: Glycoside hydrolase-type carbohydrate-binding, subgroup; IPR015443: Aldose 1-epimerase, subgroup; IPR018052: Aldose 1-epimerase, conserved site YP_008823274.1 KO: K01838: beta-phosphoglucomutase [EC:5.4.2.6]; InterPro: IPR005834: Haloacid dehalogenase-like hydrolase; IPR006402: HAD-superfamily hydrolase, subfamily IA, variant 3; IPR010972: Beta-phosphoglucomutase; IPR010976: Beta-phosphoglucomutase hydrolase; IPR023214: HAD-like domain YP_008823275.1 KO: K00691: maltose phosphorylase [EC:2.4.1.8]; InterPro: IPR005194: Glycoside hydrolase, family 65, C-terminal; IPR005195: Glycoside hydrolase, family 65, central catalytic; IPR005196: Glycoside hydrolase, family 65, N-terminal; IPR008928: Six-hairpin glycosidase-like; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR012341: Six-hairpin glycosidase; IPR017045: Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase YP_008823276.1 KO: K02778: PTS system, glucose-specific IIB component [EC:2.7.1.69]; InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR011055: Duplicated hybrid motif; IPR011300: Phosphotransferase system, IIBC component; IPR011535: Phosphotransferase system, glucose-like IIB component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008823277.1 KO: K06896; InterPro: IPR005135: Endonuclease/exonuclease/phosphatase YP_008823279.1 KO: K13727; InterPro: IPR008729: Phenolic acid decarboxylase, bacterial; IPR011038: Calycin-like; IPR012674: Calycin YP_008823280.1 InterPro: IPR005149: Transcription regulator PadR N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR018309: Transcription regulator PadR, C-terminal YP_008823281.1 InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative YP_008823282.1 InterPro: IPR001411: Tetracycline resistance protein TetB/drug resistance transporter; IPR004638: Drug resistance transporter EmrB/QacA subfamily; IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008823284.1 InterPro: IPR007159: Transcription regulator AbrB/SpoV, predicted YP_008823285.1 KO: K07171; InterPro: IPR003477: PemK-like protein; IPR011067: Plasmid maintenance toxin/Cell growth inhibitor YP_008823286.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR003838: Permease FtsX-like; IPR017871: ABC transporter, conserved site YP_008823287.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823288.1 InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008823290.1 KO: K10947; InterPro: IPR005149: Transcription regulator PadR N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823291.1 InterPro: IPR012963: Protein of unknown function DUF1700 YP_008823294.1 InterPro: IPR001107: Band 7 protein; IPR001972: Stomatin YP_008823295.1 InterPro: IPR006542: Conserved hypothetical protein CHP01655 YP_008823296.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core YP_008823297.1 KO: K02004; InterPro: IPR003838: Permease FtsX-like YP_008823298.1 KO: K03481; InterPro: IPR001347: Sugar isomerase (SIS) YP_008823300.1 KO: K02750: PTS system, arbutin-like IIC component; InterPro: IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR010975: Phosphotransferase system, alpha-glucoside-specific IIBC component; IPR011535: Phosphotransferase system, glucose-like IIB component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008823301.1 KO: K01232: maltose-6'-phosphate glucosidase [EC:3.2.1.122]; InterPro: IPR001088: Glycoside hydrolase, family 4; IPR015955: Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; IPR016040: NAD(P)-binding domain; IPR019802: Glycoside hydrolase, family 4, conserved site; IPR022616: Glycosyl hydrolase, family 4, C-terminal YP_008823302.1 InterPro: IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter YP_008823303.1 InterPro: IPR006339: Transcription regulator AbrB; IPR007159: Transcription regulator AbrB/SpoV, predicted YP_008823305.1 InterPro: IPR000064: NLP/P60; IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR013338: Lysozyme domain, subfamily 2 YP_008823306.1 KO: K02529; InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008823307.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823308.1 KO: K02004; InterPro: IPR003838: Permease FtsX-like YP_008823309.1 InterPro: IPR007138: Antibiotic biosynthesis monooxygenase; IPR011008: Dimeric alpha-beta barrel YP_008823310.1 InterPro: IPR002549: Uncharacterised protein family UPF0118 YP_008823312.1 KO: K01226: trehalose-6-phosphate hydrolase [EC:3.2.1.93]; InterPro: IPR006047: Glycosyl hydrolase, family 13, catalytic domain; IPR006589: Glycosyl hydrolase, family 13, subfamily, catalytic domain; IPR012769: Alpha,alpha-phosphotrehalase; IPR013780: Glycosyl hydrolase, family 13, all-beta; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR015902: Alpha amylase; IPR017853: Glycoside hydrolase, superfamily YP_008823313.1 InterPro: IPR002549: Uncharacterised protein family UPF0118 YP_008823314.1 KO: K09815: zinc transport system substrate-binding protein; InterPro: IPR006127: ABC transporter, metal-binding lipoprotein; IPR006128: Adhesion lipoprotein; IPR006129: Adhesin B; IPR011038: Calycin-like; IPR012674: Calycin; IPR015304: YodA YP_008823315.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR007492: LytTr, DNA-binding domain; IPR011006: CheY-like superfamily YP_008823316.1 KO: K07706: two-component system, AgrA family, sensor histidine kinase AgrC [EC:2.7.13.-]; InterPro: IPR003594: ATPase-like, ATP-binding domain YP_008823318.1 KO: K07813: accessory gene regulator B; InterPro: IPR006741: Accessory gene regulator B YP_008823320.1 InterPro: IPR000212: DNA helicase, UvrD/REP type; IPR014016: Helicase, superfamily 1, UvrD-related; IPR014017: DNA helicase, UvrD-like, C-terminal YP_008823321.1 KO: K16509; InterPro: IPR006504: Transcriptional regulator Spx/MgsR; IPR006660: Arsenate reductase-like; IPR012336: Thioredoxin-like fold YP_008823322.1 InterPro: IPR006660: Arsenate reductase-like; IPR012336: Thioredoxin-like fold YP_008823325.1 KO: K00432: glutathione peroxidase [EC:1.11.1.9]; InterPro: IPR000889: Glutathione peroxidase; IPR012336: Thioredoxin-like fold YP_008823326.1 KO: K07173: S-ribosylhomocysteine lyase [EC:4.4.1.21]; InterPro: IPR003815: S-ribosylhomocysteinase (LuxS); IPR011249: Metalloenzyme, LuxS/M16 peptidase-like, metal-binding YP_008823327.1 KO: K01760: cystathionine beta-lyase [EC:4.4.1.8]; InterPro: IPR000277: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008823328.1 KO: K01738: cysteine synthase A [EC:2.5.1.47]; InterPro: IPR001216: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; IPR001926: Pyridoxal phosphate-dependent enzyme, beta subunit YP_008823329.1 KO: K02356; InterPro: IPR001059: Translation elongation factor P/YeiP, central; IPR008991: Translation protein SH3-like; IPR011768: Translation elongation factor P; IPR012340: Nucleic acid-binding, OB-fold; IPR013185: Translation elongation factor, KOW-like; IPR013852: Translation elongation factor P/YeiP, conserved site; IPR014722: Translation protein SH3-like, subgroup; IPR015365: Elongation factor P, C-terminal; IPR016027: Nucleic acid-binding, OB-fold-like; IPR020599: Translation elongation factor P/YeiP YP_008823330.1 InterPro: IPR007737: M trans-acting positive regulator YP_008823331.1 InterPro: IPR002035: von Willebrand factor, type A; IPR008454: Collagen-binding surface protein Cna-like, B-type domain; IPR008970: Collagen-binding surface protein Cna, B-type domain YP_008823332.1 InterPro: IPR008454: Collagen-binding surface protein Cna-like, B-type domain YP_008823333.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR008454: Collagen-binding surface protein Cna-like, B-type domain; IPR019931: LPXTG-motif cell wall anchor; IPR019948: Gram-positive anchor YP_008823334.1 KO: K07284; InterPro: IPR005754: Peptidase C60, sortase A/B; IPR023365: Peptidase C60A/B, sortase domain YP_008823335.1 KO: K11068; InterPro: IPR004254: Hly-III-related; IPR005744: HylII YP_008823336.1 KO: K01586: diaminopimelate decarboxylase [EC:4.1.1.20]; InterPro: IPR000183: Ornithine/DAP/Arg decarboxylase; IPR002986: Diaminopimelate decarboxylase, LysA; IPR009006: Alanine racemase/group IV decarboxylase, C-terminal; IPR022643: Orn/DAP/Arg decarboxylase 2, C-terminal; IPR022644: Orn/DAP/Arg decarboxylase 2, N-terminal; IPR022653: Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site YP_008823337.1 KO: K01778: diaminopimelate epimerase [EC:5.1.1.7]; InterPro: IPR001653: Diaminopimelate epimerase, DapF; IPR018510: Diaminopimelate epimerase, active site YP_008823338.1 KO: K01714: dihydrodipicolinate synthase [EC:4.2.1.52]; InterPro: IPR002220: Dihydrodipicolinate synthetase-like; IPR005263: Dihydrodipicolinate synthase, DapA; IPR013785: Aldolase-type TIM barrel; IPR020624: Dihydrodipicolinate synthetase, conserved site; IPR020625: Dihydrodipicolinate synthetase, active site YP_008823339.1 KO: K00215: dihydrodipicolinate reductase [EC:1.3.1.26]; InterPro: IPR000846: Dihydrodipicolinate reductase, N-terminal; IPR011770: Dihydrodipicolinate reductase, bacterial/plant; IPR016040: NAD(P)-binding domain; IPR022663: Dihydrodipicolinate reductase, C-terminal; IPR022664: Dihydrodipicolinate reductase, conserved site; IPR023940: Dihydrodipicolinate reductase, bacterial YP_008823340.1 KO: K05822: tetrahydrodipicolinate N-acetyltransferase [EC:2.3.1.89]; InterPro: IPR001451: Bacterial transferase hexapeptide repeat; IPR011004: Trimeric LpxA-like; IPR013710: Tetrahydrodipicolinate acetyltransferase, N-terminal; IPR018357: Hexapeptide transferase, conserved site; IPR019873: Tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH YP_008823341.1 KO: K00133: aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]; InterPro: IPR000534: Semialdehyde dehydrogenase, NAD-binding; IPR005986: Aspartate-semialdehyde dehydrogenase, beta-type; IPR012080: Aspartate-semialdehyde dehydrogenase; IPR012280: Semialdehyde dehydrogenase, dimerisation domain; IPR016040: NAD(P)-binding domain YP_008823342.1 KO: K00928: aspartate kinase [EC:2.7.2.4]; InterPro: IPR001048: Aspartate/glutamate/uridylate kinase; IPR001341: Aspartate kinase domain; IPR018042: Aspartate kinase, conserved site YP_008823343.1 KO: K05823: N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]; InterPro: IPR002933: Peptidase M20; IPR011650: Peptidase M20, dimerisation; IPR017439: Amidohydrolase YP_008823344.1 KO: K00841: aminotransferase [EC:2.6.1.-]; InterPro: IPR001176: 1-aminocyclopropane-1-carboxylate synthase; IPR004838: Aminotransferases, class-I, pyridoxal-phosphate-binding site; IPR004839: Aminotransferase, class I/classII; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008823345.1 KO: K05910; InterPro: IPR004099: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR016156: FAD/NAD-linked reductase, dimerisation; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008823348.1 InterPro: IPR000281: Helix-turn-helix protein RpiR; IPR001347: Sugar isomerase (SIS); IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823349.1 KO: K00882: 1-phosphofructokinase [EC:2.7.1.56]; InterPro: IPR011611: Carbohydrate/purine kinase; IPR017583: Tagatose/fructose phosphokinase; IPR022463: 1-phosphofructokinase YP_008823350.1 KO: K02770: PTS system, fructose-specific IIC component; InterPro: IPR003353: Phosphotransferase system, fructose-specific IIB subunit; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR006327: Phosphotransferase system, fructose IIC component; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013014: Phosphotransferase system, EIIC component, type 2 YP_008823351.1 KO: K02768: PTS system, fructose-specific IIA component [EC:2.7.1.69]; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR004715: Phosphotransferase system, IIA component fructose subfamily; IPR016152: Phosphotransferase/anion transporter YP_008823352.1 KO: K01635: tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]; InterPro: IPR002915: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; IPR005927: Tagatose 1,6-diphosphate aldolase; IPR013785: Aldolase-type TIM barrel YP_008823353.1 KO: K03710; InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823354.1 KO: K02082; InterPro: IPR001347: Sugar isomerase (SIS) YP_008823355.1 KO: K01635: tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]; InterPro: IPR002915: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; IPR005927: Tagatose 1,6-diphosphate aldolase; IPR013785: Aldolase-type TIM barrel YP_008823356.1 KO: K02794: PTS system, mannose-specific IIB component [EC:2.7.1.69]; InterPro: IPR004720: Phosphotransferase system, sorbose subfamily IIB component YP_008823357.1 KO: K02795: PTS system, mannose-specific IIC component; InterPro: IPR004700: Phosphotransferase system, sorbose-specific IIC subunit YP_008823358.1 KO: K02796: PTS system, mannose-specific IID component; InterPro: IPR004704: Phosphotransferase system, mannose/fructose/sorbose family IID component YP_008823359.1 KO: K02793: PTS system, mannose-specific IIA component [EC:2.7.1.69]; InterPro: IPR004701: Phosphotransferase system, fructose subfamily IIA component YP_008823360.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008823362.1 InterPro: IPR003198: Amidinotransferase YP_008823363.1 KO: K01104; InterPro: IPR016130: Protein-tyrosine phosphatase, active site YP_008823365.1 InterPro: IPR005046: Protein of unknown function DUF285, lipoprotein predicted; IPR011889: Bacterial surface protein 26-residue repeat YP_008823366.1 KO: K00219; InterPro: IPR001155: NADH: flavin oxidoreductase/NADH oxidase, N-terminal; IPR013785: Aldolase-type TIM barrel YP_008823367.1 KO: K00128: aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]; InterPro: IPR012394: Aldehyde dehydrogenase NAD(P)-dependent; IPR015590: Aldehyde dehydrogenase domain; IPR016160: Aldehyde dehydrogenase, conserved site; IPR016161: Aldehyde/histidinol dehydrogenase; IPR016162: Aldehyde dehydrogenase, N-terminal; IPR016163: Aldehyde dehydrogenase, C-terminal YP_008823368.1 InterPro: IPR001845: HTH ArsR-type DNA-binding domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823369.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011608: PRD; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008823370.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008823372.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008823374.1 KO: K06131: cardiolipin synthase [EC:2.7.8.-]; InterPro: IPR001736: Phospholipase D/Transphosphatidylase YP_008823375.1 InterPro: IPR002937: Amine oxidase; IPR014105: Zeta-phytoene desaturase YP_008823376.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823378.1 KO: K07473 YP_008823379.1 InterPro: IPR007712: Plasmid stabilisation system; IPR012753: Addiction module toxin, RelE/StbE YP_008823381.1 KO: K03088; InterPro: IPR007627: RNA polymerase sigma-70 region 2; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013249: RNA polymerase sigma factor 70, region 4 type 2; IPR013324: RNA polymerase sigma factor, region 3/4; IPR013325: RNA polymerase sigma factor, region 2; IPR014284: RNA polymerase sigma-70 YP_008823382.1 InterPro: IPR021729: Domain of unknown function DUF3298 YP_008823385.1 InterPro: IPR001126: DNA-repair protein, UmuC-like; IPR017961: DNA polymerase, Y-family, little finger domain; IPR017962: DNA polymerase IV/DinB homologue, little finger domain; IPR017963: DNA-repair protein, UmuC-like, N-terminal; IPR024728: DNA polymerase type-Y, HhH motif YP_008823386.1 InterPro: IPR000477: Reverse transcriptase YP_008823388.1 KO: K03856: 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]; InterPro: IPR006218: DAHP synthetase I/KDSA; IPR006268: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; IPR013785: Aldolase-type TIM barrel YP_008823389.1 KO: K01735: 3-dehydroquinate synthase [EC:4.2.3.4]; InterPro: IPR016037: 3-dehydroquinate synthase AroB YP_008823390.1 KO: K01736: chorismate synthase [EC:4.2.3.5]; InterPro: IPR000453: Chorismate synthase; IPR020541: Chorismate synthase, conserved site YP_008823391.1 KO: K04517: prephenate dehydrogenase [EC:1.3.1.12]; InterPro: IPR002912: Amino acid-binding ACT; IPR003099: Prephenate dehydrogenase; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR016040: NAD(P)-binding domain YP_008823392.1 KO: K00800: 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]; InterPro: IPR001986: Enolpyruvate transferase domain; IPR006264: 3-phosphoshikimate 1-carboxyvinyltransferase; IPR013792: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta; IPR020683: Ankyrin repeat-containing domain; IPR023193: 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site YP_008823393.1 KO: K00891: shikimate kinase [EC:2.7.1.71]; InterPro: IPR000623: Shikimate kinase; IPR023000: Shikimate kinase, conserved site YP_008823394.1 KO: K04518: prephenate dehydratase [EC:4.2.1.51]; InterPro: IPR001086: Prephenate dehydratase; IPR002912: Amino acid-binding ACT; IPR018528: Prephenate dehydratase, conserved site YP_008823395.1 InterPro: IPR012933: Uncharacterised protein family UPF0395 YP_008823396.1 InterPro: IPR005357: Uncharacterised domain UPF0150 YP_008823397.1 KO: K05520; InterPro: IPR002818: ThiJ/PfpI; IPR006286: Peptidase C56, PfpI YP_008823398.1 KO: K00849: galactokinase [EC:2.7.1.6]; InterPro: IPR000705: Galactokinase; IPR006203: GHMP kinase, ATP-binding, conserved site; IPR006204: GHMP kinase; IPR006206: Mevalonate/galactokinase; IPR013750: GHMP kinase, C-terminal; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR019539: Galactokinase galactose-binding domain; IPR019741: Galactokinase, conserved site; IPR020568: Ribosomal protein S5 domain 2-type fold; IPR022963: Galactokinase, bacterial YP_008823399.1 KO: K01785: aldose 1-epimerase [EC:5.1.3.3]; InterPro: IPR008183: Aldose 1-epimerase; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR014718: Glycoside hydrolase-type carbohydrate-binding, subgroup; IPR015443: Aldose 1-epimerase, subgroup; IPR018052: Aldose 1-epimerase, conserved site YP_008823400.1 InterPro: IPR003313: Transcription regulator HTH, AraC, arabinose-binding/dimerisation; IPR009057: Homeodomain-like; IPR012287: Homeodomain-related; IPR018060: Helix-turn-helix, AraC type, DNA binding; IPR018062: Helix-turn-helix, AraC type, subdomain 2 YP_008823401.1 InterPro: IPR003680: Flavodoxin-like fold YP_008823403.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup YP_008823404.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823407.1 KO: K08323; InterPro: IPR001354: Mandelate racemase/muconate lactonizing enzyme; IPR013341: Mandelate racemase/muconate lactonizing enzyme, N-terminal; IPR013342: Mandelate racemase/muconate lactonizing enzyme, C-terminal; IPR018110: Mandelate racemase/muconate lactonizing enzyme, conserved site YP_008823408.1 InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR011055: Duplicated hybrid motif; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008823410.1 InterPro: IPR002577: Helix-turn-helix, HxlR type; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823411.1 KO: K00121: S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]; InterPro: IPR002085: Alcohol dehydrogenase superfamily, zinc-type; IPR002328: Alcohol dehydrogenase, zinc-type, conserved site; IPR011032: GroES-like; IPR013149: Alcohol dehydrogenase, C-terminal; IPR013154: Alcohol dehydrogenase GroES-like; IPR014183: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; IPR016040: NAD(P)-binding domain YP_008823412.1 KO: K01070: S-formylglutathione hydrolase [EC:3.1.2.12]; InterPro: IPR000801: Putative esterase; IPR014186: S-formylglutathione hydrolase YP_008823413.1 InterPro: IPR003740: Protein of unknown function DUF161 YP_008823416.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008823417.1 InterPro: IPR005046: Protein of unknown function DUF285, lipoprotein predicted; IPR011889: Bacterial surface protein 26-residue repeat YP_008823423.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011608: PRD YP_008823426.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008823428.1 InterPro: IPR007737: M trans-acting positive regulator YP_008823432.1 InterPro: IPR007351: Protein of unknown function DUF419 YP_008823433.1 InterPro: IPR002686: Transposase IS200-like YP_008823434.1 KO: K07496; InterPro: IPR001959: Transposase, probable, IS891/IS1136/IS1341; IPR010095: Transposase IS605, OrfB, C-terminal; IPR021027: Transposase, putative, helix-turn-helix domain YP_008823436.1 InterPro: IPR011053: Single hybrid motif YP_008823437.1 KO: K09810: lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823438.1 KO: K02004; InterPro: IPR003838: Permease FtsX-like YP_008823439.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823440.1 InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008823442.1 KO: K03293; InterPro: IPR002293: Amino acid/polyamine transporter I; IPR004840: Amino acid permease, conserved site; IPR004841: Amino acid permease domain YP_008823443.1 KO: K09820; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823444.1 KO: K09819; InterPro: IPR001626: ABC-3 YP_008823445.1 KO: K09818; InterPro: IPR006127: ABC transporter, metal-binding lipoprotein; IPR006128: Adhesion lipoprotein; IPR006129: Adhesin B YP_008823447.1 InterPro: IPR004155: PBS lyase HEAT-like repeat; IPR004453: 4Fe-4S cluster binding; IPR009051: Alpha-helical ferredoxin; IPR011989: Armadillo-like helical; IPR012285: Fumarate reductase, C-terminal; IPR013542: Domain of unknown function DUF1730; IPR016024: Armadillo-type fold; IPR017896: 4Fe-4S ferredoxin, iron-sulpur binding domain; IPR017900: 4Fe-4S ferredoxin, iron-sulphur binding, conserved site YP_008823448.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup; IPR018392: Peptidoglycan-binding lysin domain YP_008823449.1 InterPro: IPR006076: FAD dependent oxidoreductase YP_008823450.1 InterPro: IPR001411: Tetracycline resistance protein TetB/drug resistance transporter; IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008823451.1 InterPro: IPR008319: Uncharacterised conserved protein UCP031644; IPR010499: Bacterial transcription activator, effector binding; IPR011256: Regulatory factor, effector, bacterial; IPR019233: Domain of unknown function DUF2174, N-terminal YP_008823452.1 KO: K03402; InterPro: IPR001669: Arginine repressor; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR020899: Arginine repressor, C-terminal; IPR020900: Arginine repressor, DNA-binding domain; IPR024946: Arginine repressor C-terminal-like domain YP_008823454.1 KO: K07217; InterPro: IPR007760: Catalase, manganese; IPR009078: Ferritin/ribonucleotide reductase-like; IPR012347: Ferritin-related YP_008823455.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008823456.1 KO: K00936; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core YP_008823457.1 KO: K05340; InterPro: IPR010651: Sugar transport YP_008823458.1 KO: K03294; InterPro: IPR002293: Amino acid/polyamine transporter I; IPR004841: Amino acid permease domain YP_008823459.1 InterPro: IPR008863: Toxic anion resistance YP_008823460.1 InterPro: IPR018770: 5-bromo-4-chloroindolyl phosphate hydrolysis protein YP_008823461.1 KO: K01515: ADP-ribose pyrophosphatase [EC:3.6.1.13]; InterPro: IPR000086: NUDIX hydrolase domain; IPR015797: NUDIX hydrolase domain-like YP_008823463.1 KO: K01243: S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]; InterPro: IPR000845: Nucleoside phosphorylase domain; IPR010049: MTA/SAH nucleosidase; IPR018017: Nucleoside phosphorylase YP_008823464.1 InterPro: IPR000868: Isochorismatase-like YP_008823467.1 KO: K07386; InterPro: IPR000718: Peptidase M13, neprilysin; IPR008753: Peptidase M13; IPR018497: Peptidase M13, neprilysin, C-terminal; IPR024079: Metallopeptidase, catalytic domain YP_008823469.1 KO: K00948: ribose-phosphate pyrophosphokinase [EC:2.7.6.1]; InterPro: IPR000836: Phosphoribosyltransferase; IPR000842: Phosphoribosyl pyrophosphate synthetase, conserved site; IPR005946: Ribose-phosphate diphosphokinase YP_008823470.1 KO: K04487: cysteine desulfurase [EC:2.8.1.7]; InterPro: IPR000192: Aminotransferase, class V/Cysteine desulfurase; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain; IPR016454: Cysteine desulfurase, NifS; IPR020578: Aminotransferase class-V pyridoxal-phosphate binding site YP_008823471.1 InterPro: IPR014965: Protein of unknown function DUF1831 YP_008823473.1 KO: K08217; InterPro: IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008823485.1 KO: K00566: tRNA-specific 2-thiouridylase [EC:2.8.1.-]; InterPro: IPR004506: tRNA-specific 2-thiouridylase; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR023382: Adenine nucleotide alpha hydrolase-like domains YP_008823486.1 KO: K08161; InterPro: IPR001958: Tetracycline resistance protein, TetA/multidrug resistance protein MdtG; IPR005828: General substrate transporter; IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008823487.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR011075: Tetracycline transcriptional regulator, TetR-related, C-terminal; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal YP_008823488.1 InterPro: IPR010434: Protein of unknown function DUF1033 YP_008823489.1 KO: K03169; InterPro: IPR000380: DNA topoisomerase, type IA; IPR003601: DNA topoisomerase, type IA, domain 2; IPR003602: DNA topoisomerase, type IA, DNA-binding; IPR005738: DNA topoisomerase III, bacterial-type; IPR006171: Toprim domain; IPR013497: DNA topoisomerase, type IA, central; IPR013824: DNA topoisomerase, type IA, central region, subdomain 1; IPR013826: DNA topoisomerase, type IA, central region, subdomain 3; IPR023405: DNA topoisomerase, type IA, core domain; IPR023406: DNA topoisomerase, type IA, active site YP_008823490.1 InterPro: IPR007214: YbaK/aminoacyl-tRNA synthetase-associated domain YP_008823491.1 KO: K02029; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR003444: MraZ; IPR010065: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YP_008823492.1 KO: K02028; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823493.1 KO: K02030; InterPro: IPR001320: Ionotropic glutamate receptor; IPR001638: Extracellular solute-binding protein, family 3 YP_008823494.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008823495.1 InterPro: IPR008997: Ricin B-related lectin YP_008823496.1 KO: K03466; InterPro: IPR002543: Cell division protein FtsK/SpoIIIE; IPR003593: ATPase, AAA+ type, core; IPR018541: DNA translocase FtsK gamma YP_008823500.1 KO: K06941; InterPro: IPR004383: Ribosomal RNA large subunit methyltransferase RlmN; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM YP_008823501.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823502.1 KO: K15580: oligopeptide transport system substrate-binding protein; InterPro: IPR000914: Bacterial extracellular solute-binding protein, family 5 YP_008823504.1 KO: K15581: oligopeptide transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008823505.1 KO: K15582: oligopeptide transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008823506.1 KO: K15583: oligopeptide transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR010066: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; IPR013563: Oligopeptide/dipeptide ABC transporter, C-terminal; IPR017871: ABC transporter, conserved site YP_008823507.1 KO: K10823: oligopeptide transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR013563: Oligopeptide/dipeptide ABC transporter, C-terminal; IPR017871: ABC transporter, conserved site YP_008823508.1 InterPro: IPR001959: Transposase, probable, IS891/IS1136/IS1341; IPR021027: Transposase, putative, helix-turn-helix domain YP_008823511.1 KO: K07491; InterPro: IPR002686: Transposase IS200-like YP_008823512.1 InterPro: IPR000086: NUDIX hydrolase domain; IPR015797: NUDIX hydrolase domain-like YP_008823513.1 KO: K01874: methionyl-tRNA synthetase [EC:6.1.1.10]; InterPro: IPR001412: Aminoacyl-tRNA synthetase, class I, conserved site; IPR002547: tRNA-binding domain; IPR004495: Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; IPR009080: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; IPR012340: Nucleic acid-binding, OB-fold; IPR013155: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR014758: Methionyl-tRNA synthetase; IPR015413: Aminoacyl-tRNA synthetase, class I (M); IPR016027: Nucleic acid-binding, OB-fold-like; IPR023457: Methionyl-tRNA synthetase, type 2 YP_008823514.1 InterPro: IPR003812: Filamentation induced by cAMP/death on curing-related YP_008823516.1 KO: K03294; InterPro: IPR002293: Amino acid/polyamine transporter I; IPR004841: Amino acid permease domain YP_008823517.1 KO: K03424; InterPro: IPR001130: TatD superfamily; IPR012278: Deoxyribonuclease TatD; IPR015991: Deoxyribonuclease TatD, bacterial-type; IPR018228: Deoxyribonuclease, TatD-related, conserved site YP_008823518.1 KO: K05985; InterPro: IPR004466: Primase-related protein; IPR006171: Toprim domain YP_008823519.1 KO: K02528; InterPro: IPR001737: Ribosomal RNA adenine methylase transferase; IPR011530: Ribosomal RNA adenine dimethylase; IPR020596: Ribosomal RNA adenine methylase transferase, conserved site; IPR020598: Ribosomal RNA adenine methylase transferase, N-terminal; IPR023165: rRNA adenine dimethylase-like YP_008823521.1 KO: K10112: maltose/maltodextrin transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR008995: Molybdate/tungstate binding; IPR013611: Transport-associated OB, type 2; IPR017871: ABC transporter, conserved site YP_008823523.1 KO: K07171; InterPro: IPR003477: PemK-like protein; IPR011067: Plasmid maintenance toxin/Cell growth inhibitor YP_008823524.1 KO: K01734: methylglyoxal synthase [EC:4.2.3.3]; InterPro: IPR004363: Methylglyoxal synthase; IPR011607: Methylglyoxal synthase-like domain; IPR018148: Methylglyoxal synthase, active site YP_008823525.1 InterPro: IPR024529: ECF transporter, substrate-specific component YP_008823526.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017940: ABC transporter, integral membrane type 1 YP_008823527.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008823528.1 KO: K03933; InterPro: IPR004302: Chitin-binding, domain 3; IPR014756: Immunoglobulin E-set YP_008823531.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008823532.1 KO: K01183: chitinase [EC:3.2.1.14]; InterPro: IPR001223: Glycoside hydrolase, family 18, catalytic domain; IPR001579: Glycoside hydrolase, chitinase active site; IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR011583: Chitinase II; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR013783: Immunoglobulin-like fold; IPR017853: Glycoside hydrolase, superfamily YP_008823533.1 KO: K00057: glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]; InterPro: IPR006109: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; IPR006168: Glycerol-3-phosphate dehydrogenase, NAD-dependent; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR011128: Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; IPR013328: Dehydrogenase, multihelical; IPR016040: NAD(P)-binding domain YP_008823534.1 KO: K00963: UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]; InterPro: IPR005771: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type; IPR005835: Nucleotidyl transferase YP_008823536.1 InterPro: IPR001347: Sugar isomerase (SIS) YP_008823537.1 InterPro: IPR018385: C4-dicarboxylate anaerobic carrier-like YP_008823538.1 KO: K01305; InterPro: IPR006680: Amidohydrolase 1; IPR010229: Peptidase M38, beta-aspartyl dipeptidase; IPR011059: Metal-dependent hydrolase, composite domain YP_008823539.1 InterPro: IPR008462: CsbD-like YP_008823540.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823541.1 KO: K02004; InterPro: IPR003838: Permease FtsX-like YP_008823542.1 InterPro: IPR001279: Beta-lactamase-like; IPR011108: RNA-metabolising metallo-beta-lactamase YP_008823543.1 InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013012: Phosphotransferase system, EIIB component, type 3 YP_008823544.1 InterPro: IPR001279: Beta-lactamase-like; IPR022877: Uncharacterised protein family UPF0173, metal-dependent hydrolase YP_008823545.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR000644: Cystathionine beta-synthase, core; IPR006683: Thioesterase superfamily; IPR010766: DRTGG; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823546.1 KO: K06881; InterPro: IPR001667: Phosphoesterase, RecJ-like; IPR003156: Phosphoesterase, DHHA1 YP_008823547.1 KO: K06193: phosphonoacetate hydrolase [EC:3.11.1.2]; InterPro: IPR004624: PhnA protein; IPR013987: PhnA protein, N-terminal; IPR013988: PhnA protein, C-terminal YP_008823548.1 KO: K06973; InterPro: IPR007395: Peptidase, membrane zinc metallopeptidase, putative YP_008823549.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823552.1 InterPro: IPR002197: Helix-turn-helix, Fis-type; IPR009057: Homeodomain-like YP_008823553.1 InterPro: IPR002125: CMP/dCMP deaminase, zinc-binding; IPR016192: APOBEC/CMP deaminase, zinc-binding; IPR016193: Cytidine deaminase-like YP_008823554.1 InterPro: IPR004843: Metallophosphoesterase domain; IPR006146: 5'-Nucleotidase, conserved site; IPR006179: 5'-Nucleotidase/apyrase; IPR008334: 5'-Nucleotidase, C-terminal; IPR011240: Phosphoesterase-related protein YunD YP_008823555.1 InterPro: IPR009370: Protein of unknown function DUF1027 YP_008823556.1 KO: K01101: 4-nitrophenyl phosphatase [EC:3.1.3.41]; InterPro: IPR005834: Haloacid dehalogenase-like hydrolase; IPR006354: HAD-superfamily hydrolase, subfamily IIA, hypothetical 1; IPR006357: HAD-superfamily hydrolase, subfamily IIA; IPR023214: HAD-like domain; IPR023215: Nitrophenylphosphatase-like domain YP_008823557.1 InterPro: IPR010178: Integral membrane protein 1906 YP_008823558.1 InterPro: IPR007686: Phosphatidylglycerophosphatase A YP_008823559.1 KO: K00384: thioredoxin reductase (NADPH) [EC:1.8.1.9]; InterPro: IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR022890: Ferredoxin--NADP reductase, type 2; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008823560.1 InterPro: IPR004680: Divalent ion symporter YP_008823561.1 KO: K03768; InterPro: IPR002130: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain; IPR020892: Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YP_008823562.1 KO: K14155: cystathione beta-lyase [EC:4.4.1.8]; InterPro: IPR001176: 1-aminocyclopropane-1-carboxylate synthase; IPR004839: Aminotransferase, class I/classII; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008823563.1 KO: K07570; InterPro: IPR003029: Ribosomal protein S1, RNA-binding domain; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR022967: RNA-binding domain, S1 YP_008823570.1 KO: K01372; InterPro: IPR000169: Peptidase, cysteine peptidase active site; IPR004134: Peptidase C1B, bleomycin hydrolase YP_008823571.1 InterPro: IPR011009: Protein kinase-like domain; IPR016477: Fructosamine/Ketosamine-3-kinase YP_008823572.1 KO: K01071: oleoyl-[acyl-carrier-protein] hydrolase [EC:3.1.2.14]; InterPro: IPR002864: Acyl-ACP thioesterase YP_008823574.1 KO: K01424: L-asparaginase [EC:3.5.1.1]; InterPro: IPR006034: Asparaginase/glutaminase; IPR020827: Asparaginase/glutaminase, conserved site YP_008823575.1 InterPro: IPR002763: Protein of unknown function DUF72 YP_008823576.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008823577.1 KO: K07024; InterPro: IPR021130: Phosphoribosyl-ATP pyrophosphohydrolase-like; IPR023292: NTP pyrophosphohydrolase-like domain YP_008823578.1 KO: K06286; InterPro: IPR010379: Septation ring formation regulator, EzrA YP_008823579.1 KO: K04487: cysteine desulfurase [EC:2.8.1.7]; InterPro: IPR000192: Aminotransferase, class V/Cysteine desulfurase; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain; IPR016454: Cysteine desulfurase, NifS; IPR020578: Aminotransferase class-V pyridoxal-phosphate binding site YP_008823580.1 KO: K03151: thiamine biosynthesis protein ThiI; InterPro: IPR003720: Thiamine biosynthesis protein; IPR004114: THUMP; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR020536: Thiamine biosynthesis protein, C-terminal YP_008823581.1 KO: K01926; InterPro: IPR003781: CoA-binding; IPR009718: Rex DNA-binding, C-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016040: NAD(P)-binding domain; IPR022876: Transcriptional repressor, redox-sensing, Rex YP_008823582.1 KO: K01873: valyl-tRNA synthetase [EC:6.1.1.9]; InterPro: IPR001412: Aminoacyl-tRNA synthetase, class I, conserved site; IPR002300: Aminoacyl-tRNA synthetase, class Ia; IPR002303: Valyl-tRNA synthetase; IPR009008: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing domain; IPR009080: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; IPR010978: tRNA-binding arm; IPR011321: Valyl-tRNA synthetase, class Ia, C-terminal; IPR013155: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR019499: Valyl-tRNA synthetase, class Ia, tRNA-binding arm YP_008823583.1 KO: K11754: dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]; InterPro: IPR001645: Folylpolyglutamate synthetase; IPR004101: Mur ligase, C-terminal; IPR013221: Mur ligase, central; IPR018109: Folylpolyglutamate synthetase, conserved site YP_008823584.1 InterPro: IPR005833: Haloacid dehalogenase/epoxide hydrolase; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006402: HAD-superfamily hydrolase, subfamily IA, variant 3; IPR006439: HAD-superfamily hydrolase, subfamily IA, variant 1; IPR023214: HAD-like domain YP_008823585.1 KO: K03630; InterPro: IPR001405: Uncharacterised protein family UPF0758; IPR010994: RuvA domain 2-like; IPR020891: Uncharacterised protein family UPF0758, conserved site YP_008823586.1 KO: K03704; InterPro: IPR002059: Cold-shock protein, DNA-binding; IPR011129: Cold shock protein; IPR012156: Cold shock, CspA; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR019844: Cold-shock conserved site YP_008823587.1 KO: K12574: ribonuclease J [EC:3.1.-.-]; InterPro: IPR001279: Beta-lactamase-like; IPR001587: Ribonuclease J, conserved site; IPR004613: Ribonuclease J; IPR011108: RNA-metabolising metallo-beta-lactamase YP_008823588.1 InterPro: IPR009907: Uncharacterised protein family UPF0356 YP_008823589.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008823590.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008823591.1 InterPro: IPR001451: Bacterial transferase hexapeptide repeat; IPR011004: Trimeric LpxA-like YP_008823592.1 KO: K01358: ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; InterPro: IPR001907: Peptidase S14, ClpP; IPR018215: Peptidase S14, ClpP, active site; IPR023562: Peptidase S14/S49 YP_008823594.1 KO: K01126: glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]; InterPro: IPR004129: Glycerophosphoryl diester phosphodiesterase; IPR017946: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YP_008823595.1 KO: K00791: tRNA dimethylallyltransferase [EC:2.5.1.75]; InterPro: IPR002627: tRNA isopentenyltransferase; IPR018022: tRNA delta(2)-isopentenylpyrophosphate transferase YP_008823596.1 KO: K03665; InterPro: IPR006073: GTP binding domain; IPR016496: HflX GTPase YP_008823597.1 KO: K03713; InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative YP_008823598.1 KO: K01915: glutamine synthetase [EC:6.3.1.2]; InterPro: IPR004809: Glutamine synthetase type I; IPR008146: Glutamine synthetase, catalytic domain; IPR008147: Glutamine synthetase, beta-Grasp; IPR014746: Glutamine synthetase/guanido kinase, catalytic domain YP_008823600.1 KO: K01937: CTP synthase [EC:6.3.4.2]; InterPro: IPR004468: CTP synthase; IPR017456: CTP synthase, N-terminal; IPR017926: Glutamine amidotransferase type 1 YP_008823601.1 KO: K01624: fructose-bisphosphate aldolase, class II [EC:4.1.2.13]; InterPro: IPR000771: Ketose-bisphosphate aldolase, class-II; IPR011289: Fructose-1,6-bisphosphate aldolase, class 2; IPR013785: Aldolase-type TIM barrel YP_008823602.1 KO: K00790: UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]; InterPro: IPR001986: Enolpyruvate transferase domain; IPR005750: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; IPR013792: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YP_008823603.1 KO: K03628: transcription termination factor Rho; InterPro: IPR000194: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; IPR003593: ATPase, AAA+ type, core; IPR004665: Transcription termination factor Rho; IPR011112: Rho termination factor, N-terminal; IPR011113: Rho termination factor, RNA-binding; IPR011129: Cold shock protein; IPR012340: Nucleic acid-binding, OB-fold YP_008823604.1 KO: K02909: large subunit ribosomal protein L31; InterPro: IPR002150: Ribosomal protein L31 YP_008823605.1 InterPro: IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR013783: Immunoglobulin-like fold YP_008823606.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008823607.1 KO: K06872; InterPro: IPR007621: Protein of unknown function DUF477 YP_008823610.1 KO: K02343: DNA polymerase III subunit gamma/tau [EC:2.7.7.7]; InterPro: IPR001270: Chaperonin ClpA/B; IPR003593: ATPase, AAA+ type, core; IPR003959: ATPase, AAA-type, core; IPR008921: DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal; IPR012763: DNA polymerase III, subunit gamma/ tau; IPR022754: DNA polymerase III, gamma subunit, domain III YP_008823611.1 KO: K09747; InterPro: IPR004401: Uncharacterised protein family UPF0133 YP_008823612.1 KO: K06187: recombination protein RecR; InterPro: IPR000093: DNA recombination protein RecR; IPR006171: Toprim domain; IPR015967: Recombination protein RecR, conserved site; IPR023627: Recombination protein RecR; IPR023628: Recombination protein RecR, C4-type zinc finger YP_008823613.1 KO: K00943: dTMP kinase [EC:2.7.4.9]; InterPro: IPR018094: Thymidylate kinase; IPR018095: Thymidylate kinase, conserved site YP_008823614.1 InterPro: IPR010375: Protein of unknown function DUF970; IPR011322: Nitrogen regulatory PII-like, alpha/beta YP_008823615.1 KO: K02341: DNA polymerase III subunit delta' [EC:2.7.7.7]; InterPro: IPR004622: DNA polymerase III, delta prime subunit YP_008823616.1 InterPro: IPR007557: PSP1, C-terminal YP_008823617.1 InterPro: IPR010377: Initiation control protein, YabA YP_008823618.1 KO: K07056; InterPro: IPR000878: Tetrapyrrole methylase; IPR008189: rRNA small subunit methyltransferase I; IPR014777: Tetrapyrrole methylase, subdomain 1; IPR018063: SAM-dependent methyltransferase RsmI, conserved site YP_008823622.1 KO: K02346; InterPro: IPR001126: DNA-repair protein, UmuC-like; IPR017961: DNA polymerase, Y-family, little finger domain; IPR017962: DNA polymerase IV/DinB homologue, little finger domain; IPR017963: DNA-repair protein, UmuC-like, N-terminal; IPR022880: DNA polymerase IV; IPR024728: DNA polymerase type-Y, HhH motif YP_008823623.1 KO: K04068; InterPro: IPR012837: Ribonucleoside-triphosphate reductase activating, anaerobic YP_008823624.1 KO: K00527: ribonucleoside-triphosphate reductase [EC:1.17.4.2]; InterPro: IPR001150: Formate C-acetyltransferase glycine radical; IPR005144: ATP-cone; IPR012833: Ribonucleoside-triphosphate reductase, anaerobic; IPR019777: Formate C-acetyltransferase glycine radical, conserved site YP_008823626.1 InterPro: IPR003439: ABC transporter-like YP_008823627.1 KO: K02004; InterPro: IPR003838: Permease FtsX-like YP_008823628.1 InterPro: IPR021008: Protein of unknown function DUF3687 YP_008823629.1 KO: K03367: D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]; InterPro: IPR000873: AMP-dependent synthetase/ligase; IPR010071: Amino acid adenylation; IPR010072: D-alanine-activating enzyme; IPR020845: AMP-binding, conserved site YP_008823630.1 KO: K03739: membrane protein involved in D-alanine export; InterPro: IPR004299: Membrane bound O-acyl transferase, MBOAT; IPR024024: D-alanyl-lipoteichoic acid biosynthesis DltB YP_008823631.1 KO: K14188: D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]; InterPro: IPR003230: D-alanyl carrier protein; IPR006163: Phosphopantetheine-binding; IPR009081: Acyl carrier protein-like YP_008823632.1 KO: K03740: D-alanine transfer protein; InterPro: IPR006998: DltD, C-terminal; IPR006999: DltD, N-terminal; IPR007002: DltD, central domain; IPR023896: D-alanyl-lipoteichoic acid biosynthesis DltD YP_008823633.1 InterPro: IPR008007: Peptidase M42; IPR023367: Peptidase M42, domain 2 YP_008823634.1 InterPro: IPR010380: Protein of unknown function DUF975 YP_008823635.1 InterPro: IPR001279: Beta-lactamase-like YP_008823636.1 KO: K03800: lipoate-protein ligase A [EC:2.7.7.63]; InterPro: IPR004143: Biotin/lipoate A/B protein ligase; IPR004562: Lipoyltransferase/lipoate-protein ligase; IPR005107: CO dehydrogenase flavoprotein, C-terminal; IPR019491: Lipoate protein ligase, C-terminal YP_008823638.1 InterPro: IPR001733: Peptidase S26B, eukaryotic signal peptidase YP_008823639.1 InterPro: IPR002935: O-methyltransferase, family 3 YP_008823640.1 InterPro: IPR002104: Integrase, catalytic; IPR011010: DNA breaking-rejoining enzyme, catalytic core; IPR013762: Integrase-like, catalytic core; IPR023109: Integrase/recombinase, N-terminal; PHAST: PHAGE_Lactoc_bIL309 YP_008823642.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding; IPR011056: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain; IPR015927: Peptidase S24/S26A/S26B/S26C; IPR019759: Peptidase S24/S26A/S26B; PHAST: PHAGE_Geobac_E2 YP_008823643.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding; PHAST: PHAGE_Lactob_AQ113 YP_008823644.1 KO: K07741; InterPro: IPR013557: AntA/AntB antirepressor; PHAST: PHAGE_Brocho_BL3 YP_008823645.1 InterPro: IPR008489: Bacteriophage bIL285, Orf7; PHAST: PHAGE_Staphy_1 YP_008823651.1 KO: K07455; InterPro: IPR018330: DNA single-strand annealing protein RecT-like; PHAST: PHAGE_Lactob_LF1 YP_008823652.1 InterPro: IPR016974: Uncharacterised phage-associated protein; IPR024432: Putative exodeoxyribonuclease 8, PDDEXK-like domain YP_008823654.1 KO: K02315; InterPro: IPR002611: IstB-like ATP-binding protein; IPR003593: ATPase, AAA+ type, core; PHAST: PHAGE_Bacill_WBeta YP_008823657.1 InterPro: IPR009414: Bacteriophage 92, Orf34; PHAST: PHAGE_Lactoc_bIL286 YP_008823663.1 InterPro: IPR010024: Conserved hypothetical protein CHP1671; IPR019096: YopX protein; IPR023385: YopX-like domain, beta barrel type; PHAST: PHAGE_Entero_phiFL2A YP_008823664.1 KO: K00558: DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]; InterPro: IPR001525: C-5 cytosine methyltransferase; IPR018117: DNA methylase, C-5 cytosine-specific, active site; PHAST: PHAGE_Strept_5093 YP_008823666.1 InterPro: IPR012865: Protein of unknown function DUF1642 YP_008823671.1 InterPro: IPR013249: RNA polymerase sigma factor 70, region 4 type 2; IPR013324: RNA polymerase sigma factor, region 3/4; PHAST: PHAGE_Bacill_WBeta YP_008823675.1 InterPro: IPR002711: HNH endonuclease; IPR003615: HNH nuclease; PHAST: PHAGE_Lactob_LF1 YP_008823676.1 InterPro: IPR006448: Streptococcus phage 7201, Orf21; PHAST: PHAGE_Lactob_LF1 YP_008823677.1 InterPro: IPR005021: Bacteriophage bIL285, Orf41, terminase; PHAST: PHAGE_Lactob_LF1 YP_008823679.1 InterPro: IPR006427: Bacteriophage 16-3, portal protein; IPR006944: Bacteriophage/Gene transfer agent portal protein; PHAST: PHAGE_Lactob_LF1 YP_008823680.1 KO: K06904; InterPro: IPR006433: Prohead protease, HK97 family; PHAST: PHAGE_Lactob_LF1 YP_008823681.1 InterPro: IPR006444: Bacteriophage 16-3, major capsid protein; IPR024455: Caudovirus, capsid; PHAST: PHAGE_Lactob_LF1 YP_008823683.1 InterPro: IPR006450: Bacteriophage HK022, Gp6; IPR021146: Bacteriophage QLRG family, putative DNA packaging; PHAST: PHAGE_Lactob_LF1 YP_008823684.1 InterPro: IPR008767: Bacteriophage SPP1, head-tail adaptor; PHAST: PHAGE_Lactob_LF1 YP_008823685.1 InterPro: IPR010064: Bacteriophage HK97, Gp10; PHAST: PHAGE_Lactob_LF1 YP_008823687.1 InterPro: IPR006490: Bacteriophage bIL285, Orf50, major tail protein; IPR006724: Bacteriophage bIL286, Orf50, major tail; PHAST: PHAGE_Lactob_LF1 YP_008823690.1 InterPro: IPR010090: Bacteriophage bIL285, Orf52, tail tape measure protein; PHAST: PHAGE_Lactob_LF1 YP_008823691.1 InterPro: IPR008841: Siphovirus tail component; PHAST: PHAGE_Staphy_SMSAP5 YP_008823692.1 InterPro: IPR010572: Bacteriophage 53, Orf003; PHAST: PHAGE_Lactob_LF1 YP_008823693.1 InterPro: IPR011050: Pectin lyase fold/virulence factor; IPR012334: Pectin lyase fold; PHAST: PHAGE_Lister_A500 YP_008823694.1 InterPro: IPR018913: Domain of unknown function DUF2479 YP_008823696.1 InterPro: IPR010022: Protein of unknown function XkdX YP_008823698.1 InterPro: IPR009708: Bacteriophage A118, holin; PHAST: PHAGE_Lister_A118 YP_008823699.1 InterPro: IPR002502: N-acetylmuramoyl-L-alanine amidase domain; PHAST: PHAGE_Pseudo_phi15 YP_008823700.1 InterPro: IPR003675: CAAX amino terminal protease YP_008823701.1 InterPro: IPR000620: Drug/metabolite transporter YP_008823703.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal YP_008823704.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823706.1 KO: K08987; InterPro: IPR009732: Protein of unknown function DUF1304 YP_008823707.1 KO: K03321; InterPro: IPR002645: Sulphate transporter/antisigma-factor antagonist STAS; IPR011547: Sulphate transporter YP_008823708.1 InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative; IPR015358: Transcription regulator MerR, DNA binding YP_008823709.1 KO: K02334; InterPro: IPR005122: Uracil-DNA glycosylase-like YP_008823710.1 KO: K02888: large subunit ribosomal protein L21; InterPro: IPR001787: Ribosomal protein L21; IPR018258: Ribosomal protein L21, conserved site YP_008823711.1 KO: K07584; InterPro: IPR007422: Protein of unknown function DUF464 YP_008823712.1 KO: K02899: large subunit ribosomal protein L27; InterPro: IPR001684: Ribosomal protein L27; IPR018261: Ribosomal protein L27, conserved site YP_008823713.1 InterPro: IPR002078: RNA polymerase sigma factor 54, interaction; IPR003593: ATPase, AAA+ type, core; IPR004701: Phosphotransferase system, fructose subfamily IIA component; IPR011608: PRD; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823714.1 KO: K02794: PTS system, mannose-specific IIB component [EC:2.7.1.69]; InterPro: IPR004720: Phosphotransferase system, sorbose subfamily IIB component; IPR018455: Phosphotransferase system, sorbose subfamily IIB component, subgroup YP_008823715.1 KO: K02793: PTS system, mannose-specific IIA component [EC:2.7.1.69]; InterPro: IPR004701: Phosphotransferase system, fructose subfamily IIA component; IPR004720: Phosphotransferase system, sorbose subfamily IIB component; IPR013789: Phosphotransferase system, fructose subfamily IIA component, subgroup YP_008823716.1 KO: K02795: PTS system, mannose-specific IIC component; InterPro: IPR004700: Phosphotransferase system, sorbose-specific IIC subunit YP_008823717.1 KO: K02796: PTS system, mannose-specific IID component; InterPro: IPR004704: Phosphotransferase system, mannose/fructose/sorbose family IID component; IPR018405: Phosphotransferase system, mannose/fructose/sorbose family IID component, subgroup YP_008823718.1 InterPro: IPR010360: Protein of unknown function DUF956 YP_008823719.1 InterPro: IPR007341: Transglycosylase-associated protein YP_008823720.1 KO: K01262; InterPro: IPR000587: Creatinase; IPR000994: Peptidase M24, structural domain; IPR001131: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site YP_008823721.1 InterPro: IPR005531: Alkaline shock protein Asp23 YP_008823722.1 KO: K03625; InterPro: IPR006027: NusB/RsmB/TIM44; IPR011605: NusB antitermination factor YP_008823723.1 KO: K01491: methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]; InterPro: IPR000672: Tetrahydrofolate dehydrogenase/cyclohydrolase; IPR016040: NAD(P)-binding domain; IPR020630: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; IPR020631: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; IPR020867: Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site YP_008823724.1 KO: K03601: exodeoxyribonuclease VII large subunit [EC:3.1.11.6]; InterPro: IPR003753: Exonuclease VII, large subunit; IPR004365: Nucleic acid binding, OB-fold, tRNA/helicase-type; IPR020579: Exonuclease VII, large subunit, C-terminal YP_008823725.1 KO: K03602: exodeoxyribonuclease VII small subunit [EC:3.1.11.6]; InterPro: IPR003761: Exonuclease VII, small subunit YP_008823726.1 KO: K13789: geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]; InterPro: IPR000092: Polyprenyl synthetase; IPR008949: Terpenoid synthase; IPR017446: Polyprenyl synthetase-related YP_008823727.1 KO: K06442; InterPro: IPR002877: Ribosomal RNA methyltransferase RrmJ/FtsJ; IPR002942: RNA-binding S4; IPR004538: Haemolysin A YP_008823728.1 KO: K03402; InterPro: IPR001669: Arginine repressor; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR020899: Arginine repressor, C-terminal; IPR020900: Arginine repressor, DNA-binding domain; IPR024946: Arginine repressor C-terminal-like domain YP_008823729.1 KO: K03631; InterPro: IPR003395: RecF/RecN/SMC; IPR004604: DNA recombination/repair protein RecN YP_008823735.1 KO: K03284; InterPro: IPR002523: Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YP_008823736.1 InterPro: IPR024515: Protein of unknown function DUF3397 YP_008823737.1 KO: K03925; InterPro: IPR003444: MraZ; IPR020603: MraZ domain YP_008823738.1 KO: K03438; InterPro: IPR002903: S-adenosyl-L-methionine-dependent methyltransferase, MraW; IPR023397: S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain YP_008823739.1 InterPro: IPR007060: Septum formation initiator; IPR011922: Cell division protein, FtsL -like YP_008823740.1 KO: K12556: penicillin-binding protein 2X [EC:2.3.2.-]; InterPro: IPR001460: Penicillin-binding protein, transpeptidase; IPR005311: Penicillin-binding protein, dimerisation domain; IPR005543: PASTA; IPR012338: Beta-lactamase/transpeptidase-like YP_008823741.1 KO: K01000: phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]; InterPro: IPR000715: Glycosyl transferase, family 4; IPR003524: Phospho-N-acetylmuramoyl-pentapeptide transferase; IPR018480: Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_008823742.1 KO: K01925: UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]; InterPro: IPR004101: Mur ligase, C-terminal; IPR005762: UDP-N-acetylmuramoylalanine-D-glutamate ligase; IPR013221: Mur ligase, central; IPR016040: NAD(P)-binding domain YP_008823743.1 KO: K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]; InterPro: IPR004276: Glycosyl transferase, family 28; IPR006009: N-acetylglucosaminyltransferase, MurG; IPR007235: Glycosyl transferase, family 28, C-terminal YP_008823744.1 KO: K03589: cell division protein FtsQ; InterPro: IPR005548: Cell division protein FtsQ; IPR013685: Polypeptide-transport-associated, FtsQ-type YP_008823745.1 KO: K03590: cell division protein FtsA; InterPro: IPR003494: Cell division protein FtsA domain; IPR020823: Cell division protein FtsA; IPR021873: Cell division protein FtsA, C-terminal, Firmicutes YP_008823746.1 KO: K03531: cell division protein FtsZ; InterPro: IPR000158: Cell division protein FtsZ; IPR003008: Tubulin/FtsZ, GTPase domain; IPR008280: Tubulin/FtsZ, C-terminal; IPR018316: Tubulin/FtsZ, 2-layer sandwich domain; IPR020805: Cell division protein FtsZ, conserved site; IPR024757: Cell division protein FtsZ, C-terminal YP_008823747.1 KO: K06997; InterPro: IPR001608: Alanine racemase, N-terminal; IPR011078: Uncharacterised protein family UPF0001 YP_008823748.1 KO: K09772; InterPro: IPR007561: Cell division protein SepF/SepF-related; IPR023052: Cell division protein SepF YP_008823749.1 KO: K02221; InterPro: IPR003425: Uncharacterised protein family Ycf19 YP_008823750.1 InterPro: IPR002942: RNA-binding S4 YP_008823751.1 KO: K04074; InterPro: IPR007793: DivIVA; IPR019933: DivIVA domain YP_008823752.1 KO: K01870: isoleucyl-tRNA synthetase [EC:6.1.1.5]; InterPro: IPR001412: Aminoacyl-tRNA synthetase, class I, conserved site; IPR002300: Aminoacyl-tRNA synthetase, class Ia; IPR002301: Isoleucyl-tRNA synthetase; IPR009008: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing domain; IPR009080: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; IPR010663: Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; IPR013155: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR023585: Isoleucyl-tRNA synthetase, type 1 YP_008823753.1 InterPro: IPR002560: Transposase, IS204/IS1001/IS1096/IS1165 YP_008823754.1 KO: K00036: glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]; InterPro: IPR001282: Glucose-6-phosphate dehydrogenase; IPR016040: NAD(P)-binding domain; IPR019796: Glucose-6-phosphate dehydrogenase, active site; IPR022674: Glucose-6-phosphate dehydrogenase, NAD-binding; IPR022675: Glucose-6-phosphate dehydrogenase, C-terminal YP_008823755.1 KO: K03709; InterPro: IPR001367: Iron dependent repressor; IPR007167: Ferrous iron transporter, FeoA subunit; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR022687: Iron dependent repressor, N-terminal; IPR022689: Iron dependent repressor, diptheria toxin type YP_008823757.1 KO: K06206; InterPro: IPR005224: Sugar fermentation stimulation protein YP_008823758.1 InterPro: IPR000683: Oxidoreductase, N-terminal; IPR016040: NAD(P)-binding domain YP_008823759.1 InterPro: IPR001650: Helicase, C-terminal; IPR011545: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; IPR014001: DEAD-like helicase YP_008823760.1 InterPro: IPR002078: RNA polymerase sigma factor 54, interaction; IPR003593: ATPase, AAA+ type, core; IPR004701: Phosphotransferase system, fructose subfamily IIA component; IPR005471: Transcription regulator IclR, N-terminal; IPR011608: PRD; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823761.1 KO: K02760: PTS system, cellobiose-specific IIB component [EC:2.7.1.69]; InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013012: Phosphotransferase system, EIIB component, type 3 YP_008823762.1 KO: K02759: PTS system, cellobiose-specific IIA component [EC:2.7.1.69]; InterPro: IPR003188: Phosphotransferase system, lactose/cellobiose-specific IIA subunit YP_008823763.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008823765.1 InterPro: IPR021524: Protein of unknown function DUF3188 YP_008823766.1 InterPro: IPR021701: Domain of unknown function DUF3284 YP_008823767.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823770.1 KO: K01269; InterPro: IPR000787: Peptidase M29, aminopeptidase II YP_008823771.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR011075: Tetracycline transcriptional regulator, TetR-related, C-terminal; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal YP_008823772.1 InterPro: IPR001226: Flavodoxin, conserved site; IPR008254: Flavodoxin/nitric oxide synthase; IPR010087: Flavodoxin, short chain YP_008823773.1 KO: K01265; InterPro: IPR000994: Peptidase M24, structural domain; IPR001714: Peptidase M24, methionine aminopeptidase; IPR002467: Peptidase M24A, methionine aminopeptidase, subfamily 1 YP_008823774.1 KO: K07058; InterPro: IPR017039: Uncharacterised protein family UPF0761 YP_008823775.1 KO: K13685; InterPro: IPR000715: Glycosyl transferase, family 4; IPR018480: Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_008823776.1 KO: K07011; InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823777.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823778.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823779.1 KO: K00973: glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]; InterPro: IPR005835: Nucleotidyl transferase; IPR005907: Glucose-1-phosphate thymidylyltransferase, short form YP_008823780.1 KO: K01790: dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]; InterPro: IPR000888: dTDP-4-dehydrorhamnose 3,5-epimerase-related; IPR011051: Cupin, RmlC-type; IPR014710: RmlC-like jelly roll fold YP_008823781.1 KO: K01710: dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]; InterPro: IPR001509: NAD-dependent epimerase/dehydratase; IPR005888: dTDP-glucose 4,6-dehydratase; IPR016040: NAD(P)-binding domain YP_008823783.1 KO: K00067: dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]; InterPro: IPR005913: dTDP-4-dehydrorhamnose reductase; IPR016040: NAD(P)-binding domain YP_008823786.1 KO: K01992; InterPro: IPR000412: ABC-2; IPR013525: ABC-2 type transporter YP_008823787.1 KO: K01990; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823788.1 InterPro: IPR010743: Methionine biosynthesis MetW YP_008823789.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823790.1 InterPro: IPR003362: Bacterial sugar transferase; IPR017475: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_008823791.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823792.1 InterPro: IPR007074: LicD YP_008823793.1 KO: K00991: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]; InterPro: IPR001228: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_008823794.1 InterPro: IPR001509: NAD-dependent epimerase/dehydratase; IPR016040: NAD(P)-binding domain YP_008823795.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823796.1 InterPro: IPR007016: O-antigen ligase-related YP_008823797.1 KO: K07271; InterPro: IPR007074: LicD YP_008823798.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008823801.1 KO: K01784: UDP-glucose 4-epimerase [EC:5.1.3.2]; InterPro: IPR001509: NAD-dependent epimerase/dehydratase; IPR016040: NAD(P)-binding domain YP_008823802.1 InterPro: IPR001466: Beta-lactamase-related; IPR012338: Beta-lactamase/transpeptidase-like YP_008823803.1 KO: K07082; InterPro: IPR003770: Uncharacterised protein family UPF0755, YceG-like YP_008823804.1 KO: K03624; InterPro: IPR001437: Transcription elongation factor, GreA/GreB, C-terminal; IPR006359: Transcription elongation factor GreA; IPR018151: Transcription elongation factor, GreA/GreB, conserved site; IPR022691: Transcription elongation factor, GreA/GreB, N-terminal; IPR023459: Transcription elongation factor GreA/GreB YP_008823805.1 InterPro: IPR016975: Cell wall-active antibiotic response protein; IPR024425: Domain of unknown function DUF2154 YP_008823806.1 KO: K11617: two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR005467: Signal transduction histidine kinase, core; IPR011712: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; IPR017202: Signal transduction histidine kinase, LiaS YP_008823807.1 KO: K11618: two-component system, NarL family, response regulator LiaR; InterPro: IPR000792: Transcription regulator LuxR, C-terminal; IPR001789: Signal transduction response regulator, receiver domain; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008823808.1 InterPro: IPR002508: Cell wall hydrolase/autolysin, catalytic; IPR003343: Bacterial Ig-like, group 2; IPR006637: Clostridial hydrophobic; IPR008964: Invasin/intimin cell-adhesion YP_008823809.1 KO: K06213; InterPro: IPR000644: Cystathionine beta-synthase, core; IPR006667: MgtE magnesium transporter, integral membrane; IPR006668: Magnesium transporter, MgtE intracellular domain; IPR006669: Divalent cation transporter; IPR013785: Aldolase-type TIM barrel YP_008823810.1 KO: K03499; InterPro: IPR003148: Regulator of K+ conductance, N-terminal; IPR006037: Regulator of K+ conductance, C-terminal; IPR016040: NAD(P)-binding domain YP_008823811.1 InterPro: IPR000361: FeS cluster biogenesis; IPR008326: Uncharacterised conserved protein UCP034852 YP_008823812.1 InterPro: IPR006139: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; IPR006140: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; IPR016040: NAD(P)-binding domain YP_008823813.1 InterPro: IPR009574: Protein of unknown function DUF1189 YP_008823814.1 InterPro: IPR007267: GtrA-like protein YP_008823815.1 KO: K04564: superoxide dismutase, Fe-Mn family [EC:1.15.1.1]; InterPro: IPR001189: Manganese/iron superoxide dismutase; IPR019831: Manganese/iron superoxide dismutase, N-terminal; IPR019832: Manganese/iron superoxide dismutase, C-terminal; IPR019833: Manganese/iron superoxide dismutase, binding site YP_008823816.1 KO: K03704; InterPro: IPR002059: Cold-shock protein, DNA-binding; IPR011129: Cold shock protein; IPR012156: Cold shock, CspA; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR019844: Cold-shock conserved site YP_008823817.1 InterPro: IPR007737: M trans-acting positive regulator YP_008823818.1 InterPro: IPR019931: LPXTG-motif cell wall anchor YP_008823820.1 InterPro: IPR008928: Six-hairpin glycosidase-like YP_008823822.1 InterPro: IPR004101: Mur ligase, C-terminal; IPR005863: UDP-MurNAc-pentapeptide synthetase; IPR013221: Mur ligase, central YP_008823823.1 InterPro: IPR004474: Cell envelope-related transcriptional attenuator YP_008823824.1 InterPro: IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR013783: Immunoglobulin-like fold; IPR017853: Glycoside hydrolase, superfamily YP_008823825.1 KO: K13381: bifunctional chitinase/lysozyme [EC:3.2.1.14 3.2.1.17]; InterPro: IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR013783: Immunoglobulin-like fold; IPR017853: Glycoside hydrolase, superfamily YP_008823826.1 KO: K03933; InterPro: IPR004302: Chitin-binding, domain 3; IPR014756: Immunoglobulin E-set YP_008823827.1 InterPro: IPR021147: Protein of unknown function DUF697 YP_008823828.1 KO: K00599: [EC:2.1.1.-]; InterPro: IPR001566: 23S rRNA methyltransferase/RumA; IPR002792: Deoxyribonuclease/rho motif-related TRAM; IPR016027: Nucleic acid-binding, OB-fold-like YP_008823829.1 KO: K03565; InterPro: IPR003783: Regulatory protein RecX YP_008823830.1 KO: K03575: A/G-specific adenine glycosylase [EC:3.2.2.-]; InterPro: IPR000086: NUDIX hydrolase domain; IPR000445: Helix-hairpin-helix motif; IPR003265: HhH-GPD domain; IPR003651: Endonuclease III-like, iron-sulphur cluster loop motif; IPR004035: Endonuclease III, iron-sulphur binding site; IPR005760: A/G-specific adenine glycosylase MutY, bacterial form; IPR011257: DNA glycosylase; IPR015797: NUDIX hydrolase domain-like; IPR023170: Helix-turn-helix, base-excision DNA repair, C-terminal YP_008823831.1 KO: K07586; InterPro: IPR007295: Domain of unknown function DUF402; IPR016882: Uncharacterised protein family UPF0374 YP_008823832.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823833.1 InterPro: IPR002549: Uncharacterised protein family UPF0118 YP_008823834.1 KO: K03699; InterPro: IPR000644: Cystathionine beta-synthase, core; IPR002550: Domain of unknown function DUF21; IPR005170: Transporter-associated domain; IPR016169: CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YP_008823835.1 KO: K02837; InterPro: IPR000795: Protein synthesis factor, GTP-binding; IPR004161: Translation elongation factor EFTu/EF1A, domain 2; IPR004548: Peptide chain release factor 3; IPR005225: Small GTP-binding protein domain; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR009022: Elongation factor G/III/V YP_008823837.1 InterPro: IPR014959: Protein of unknown function DUF1827 YP_008823838.1 KO: K03697; InterPro: IPR001270: Chaperonin ClpA/B; IPR001943: UvrB/UvrC protein; IPR003593: ATPase, AAA+ type, core; IPR003959: ATPase, AAA-type, core; IPR009055: UvrB, C-terminal UvrC-binding; IPR013093: ATPase, AAA-2; IPR018368: Chaperonin ClpA/B, conserved site; IPR019489: Clp ATPase, C-terminal YP_008823840.1 KO: K11189; InterPro: IPR000032: Phosphotransferase system, phosphocarrier HPr protein-like; IPR001020: Phosphotransferase system, HPr histidine phosphorylation site; IPR002114: Phosphotransferase system, HPr serine phosphorylation site; IPR005698: Phosphotransferase system, phosphocarrier HPr protein YP_008823841.1 KO: K08483: phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9]; InterPro: IPR000121: PEP-utilising enzyme, C-terminal; IPR006318: Phosphoenolpyruvate-utilising enzyme; IPR008279: PEP-utilising enzyme, mobile domain; IPR008731: Phosphotransferase system, PEP-utilising enzyme, N-terminal; IPR015813: Pyruvate/Phosphoenolpyruvate kinase; IPR018274: PEP-utilising enzyme, active site; IPR023151: PEP-utilising enzyme, conserved site YP_008823842.1 InterPro: IPR001296: Glycosyl transferase, family 1 YP_008823843.1 KO: K03429: 1,2-diacylglycerol 3-glucosyltransferase [EC:2.4.1.157]; InterPro: IPR001296: Glycosyl transferase, family 1 YP_008823844.1 KO: K00020: 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]; InterPro: IPR006115: 6-phosphogluconate dehydrogenase, NADP-binding; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR013328: Dehydrogenase, multihelical; IPR015815: 3-hydroxyacid dehydrogenase/reductase; IPR016040: NAD(P)-binding domain YP_008823845.1 InterPro: IPR014904: Protein of unknown function DUF1797 YP_008823846.1 InterPro: IPR000305: Excinuclease ABC, C subunit, N-terminal; IPR004791: Excinuclease ABC, C subunit YP_008823847.1 InterPro: IPR000835: Transcription regulator HTH, MarR-type; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823848.1 KO: K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]; InterPro: IPR004655: Beta-ketoacyl-acyl carrier protein synthase III (FabH); IPR013747: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; IPR013751: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; IPR016038: Thiolase-like, subgroup; IPR016039: Thiolase-like YP_008823849.1 KO: K02078; InterPro: IPR003231: Acyl carrier protein (ACP); IPR006163: Phosphopantetheine-binding; IPR009081: Acyl carrier protein-like YP_008823850.1 KO: K00645: [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]; InterPro: IPR001227: Acyl transferase domain; IPR004410: Malonyl CoA-acyl carrier protein transacylase, FabD-type; IPR014043: Acyl transferase; IPR016035: Acyl transferase/acyl hydrolase/lysophospholipase; IPR016036: Malonyl-CoA ACP transacylase, ACP-binding; IPR020801: Polyketide synthase, acyl transferase domain YP_008823851.1 KO: K00059: 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]; InterPro: IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR011284: 3-oxoacyl-(acyl-carrier-protein) reductase; IPR016040: NAD(P)-binding domain; IPR020842: Polyketide synthase/Fatty acid synthase, KR; IPR020904: Short-chain dehydrogenase/reductase, conserved site YP_008823852.1 KO: K09458: 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]; InterPro: IPR000794: Beta-ketoacyl synthase; IPR014030: Beta-ketoacyl synthase, N-terminal; IPR014031: Beta-ketoacyl synthase, C-terminal; IPR016038: Thiolase-like, subgroup; IPR016039: Thiolase-like; IPR017568: 3-oxoacyl-[acyl-carrier-protein] synthase 2; IPR018201: Beta-ketoacyl synthase, active site; IPR020841: Polyketide synthase, beta-ketoacyl synthase domain YP_008823853.1 KO: K02160: acetyl-CoA carboxylase biotin carboxyl carrier protein; InterPro: IPR000089: Biotin/lipoyl attachment; IPR001249: Acetyl-CoA biotin carboxyl carrier; IPR001882: Biotin-binding site; IPR011053: Single hybrid motif YP_008823854.1 KO: K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]; InterPro: IPR010084: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; IPR013114: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_008823855.1 KO: K01961: acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]; InterPro: IPR004549: Acetyl-CoA carboxylase, biotin carboxylase; IPR005479: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; IPR005481: Carbamoyl-phosphate synthase, large subunit, N-terminal; IPR005482: Biotin carboxylase, C-terminal; IPR011054: Rudiment single hybrid motif; IPR011761: ATP-grasp fold; IPR011764: Biotin carboxylation domain; IPR013815: ATP-grasp fold, subdomain 1; IPR013816: ATP-grasp fold, subdomain 2; IPR013817: Pre-ATP-grasp fold; IPR016185: PreATP-grasp-like fold YP_008823856.1 KO: K01963: acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2]; InterPro: IPR000022: Carboxyl transferase; IPR000438: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; IPR011762: Acetyl-coenzyme A carboxyltransferase, N-terminal YP_008823857.1 KO: K01962: acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]; InterPro: IPR001095: Acetyl-CoA carboxylase, alpha subunit; IPR011763: Acetyl-coenzyme A carboxyltransferase, C-terminal YP_008823862.1 InterPro: IPR014942: Protein of unknown function DUF1814 YP_008823863.1 KO: K02030; InterPro: IPR001320: Ionotropic glutamate receptor; IPR001638: Extracellular solute-binding protein, family 3 YP_008823864.1 KO: K02029; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR010065: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YP_008823865.1 KO: K02028; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823866.1 KO: K07015; InterPro: IPR005834: Haloacid dehalogenase-like hydrolase; IPR006439: HAD-superfamily hydrolase, subfamily IA, variant 1; IPR006549: HAD-superfamily hydrolase, subfamily IIIA; IPR010021: HAD-superfamily phosphatase, subfamily IIIA; IPR023214: HAD-like domain YP_008823867.1 KO: K06948; InterPro: IPR006073: GTP binding domain; IPR019988: GTP-binding protein, riobosome biogenesis, YqeH YP_008823868.1 KO: K07574; InterPro: IPR001890: RNA-binding, CRM domain; IPR017924: RNA-binding protein YhbY YP_008823869.1 KO: K00969: nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]; InterPro: IPR004820: Cytidylyltransferase; IPR004821: Cytidyltransferase-related; IPR005248: Probable nicotinate-nucleotide adenylyltransferase; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008823870.1 InterPro: IPR003607: Metal-dependent phosphohydrolase, HD domain; IPR005249: Conserved hypothetical protein CHP00488; IPR006674: Metal-dependent phosphohydrolase, HD subdomain; IPR023279: HD domain YP_008823871.1 KO: K09710; InterPro: IPR004394: Ribosome-associated, Iojap-like YP_008823873.1 InterPro: IPR008513: Uncharacterised protein family UPF0348; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008823874.1 InterPro: IPR002876: Protein of unknown function DUF28; IPR017856: Integrase, N-terminal zinc-binding domain-like YP_008823876.1 KO: K03657: DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]; InterPro: IPR000212: DNA helicase, UvrD/REP type; IPR014016: Helicase, superfamily 1, UvrD-related YP_008823877.1 KO: K01552; InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006404: ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; IPR006416: ATPase, P-type, heavy metal translocating; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008823878.1 KO: K01821: 4-oxalocrotonate tautomerase [EC:5.3.2.-]; InterPro: IPR004370: 4-oxalocrotonate tautomerase; IPR014347: Tautomerase; IPR018191: 4-oxalocrotonate tautomerase, bacteria/archaea YP_008823879.1 KO: K01868: threonyl-tRNA synthetase [EC:6.1.1.3]; InterPro: IPR002314: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; IPR002320: Threonyl-tRNA synthetase, class IIa; IPR004095: TGS; IPR004154: Anticodon-binding; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR012675: Beta-grasp fold, ferredoxin-type; IPR012676: TGS-like; IPR012947: Threonyl/alanyl tRNA synthetase, SAD; IPR018163: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain YP_008823880.1 InterPro: IPR012287: Homeodomain-related; IPR018060: Helix-turn-helix, AraC type, DNA binding YP_008823882.1 InterPro: IPR000281: Helix-turn-helix protein RpiR; IPR001347: Sugar isomerase (SIS); IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823883.1 KO: K00687: penicillin-binding protein 2B [EC:2.3.2.-]; InterPro: IPR001460: Penicillin-binding protein, transpeptidase; IPR005311: Penicillin-binding protein, dimerisation domain; IPR012338: Beta-lactamase/transpeptidase-like YP_008823884.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR006379: HAD-superfamily hydrolase, subfamily IIB; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008823885.1 KO: K06901; InterPro: IPR006043: Xanthine/uracil/vitamin C permease YP_008823886.1 InterPro: IPR001958: Tetracycline resistance protein, TetA/multidrug resistance protein MdtG; IPR005828: General substrate transporter; IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008823887.1 InterPro: IPR021324: Protein of unknown function DUF2929 YP_008823888.1 KO: K02337: DNA polymerase III subunit alpha [EC:2.7.7.7]; InterPro: IPR003141: Polymerase/histidinol phosphatase, N-terminal; IPR004013: PHP, C-terminal; IPR004365: Nucleic acid binding, OB-fold, tRNA/helicase-type; IPR004805: DNA polymerase III, alpha subunit; IPR011708: Bacterial DNA polymerase III, alpha subunit; IPR016195: Polymerase/histidinol phosphatase-like YP_008823889.1 KO: K00850: 6-phosphofructokinase 1 [EC:2.7.1.11]; InterPro: IPR000023: Phosphofructokinase domain; IPR012003: ATP-dependent phosphofructokinase, prokaryotic; IPR012828: 6-phosphofructokinase; IPR022953: Phosphofructokinase YP_008823890.1 KO: K00873: pyruvate kinase [EC:2.7.1.40]; InterPro: IPR001697: Pyruvate kinase; IPR008279: PEP-utilising enzyme, mobile domain; IPR011037: Pyruvate kinase-like, insert domain; IPR015793: Pyruvate kinase, barrel; IPR015794: Pyruvate kinase, alpha/beta; IPR015795: Pyruvate kinase, C-terminal; IPR015806: Pyruvate kinase, beta-barrel insert domain; IPR015813: Pyruvate/Phosphoenolpyruvate kinase YP_008823891.1 InterPro: IPR000847: Transcription regulator HTH, LysR; IPR005119: LysR, substrate-binding; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823892.1 KO: K07088; InterPro: IPR004776: Auxin efflux carrier YP_008823893.1 KO: K07040; InterPro: IPR003772: Protein of unknown function DUF177 YP_008823894.1 KO: K02911: large subunit ribosomal protein L32; InterPro: IPR002677: Ribosomal protein L32p; IPR011332: Ribosomal protein, zinc-binding domain YP_008823895.1 KO: K00033: 6-phosphogluconate dehydrogenase [EC:1.1.1.44]; InterPro: IPR006113: 6-phosphogluconate dehydrogenase, decarboxylating; IPR006114: 6-phosphogluconate dehydrogenase, C-terminal; IPR006115: 6-phosphogluconate dehydrogenase, NADP-binding; IPR006184: 6-phosphogluconate-binding site; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR012284: Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension; IPR013328: Dehydrogenase, multihelical; IPR016040: NAD(P)-binding domain YP_008823896.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008823897.1 InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008823900.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008823903.1 InterPro: IPR012480: Heparinase II/III-like YP_008823904.1 KO: K02529; InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008823906.1 InterPro: IPR016624: Uncharacterised conserved protein UCP014753 YP_008823907.1 InterPro: IPR008928: Six-hairpin glycosidase-like; IPR010905: Glycosyl hydrolase, family 88; IPR012341: Six-hairpin glycosidase YP_008823908.1 KO: K02027; InterPro: IPR006059: Bacterial extracellular solute-binding, family 1 YP_008823909.1 InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008823910.1 KO: K02026; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008823912.1 KO: K08217; InterPro: IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter YP_008823919.1 KO: K06999; InterPro: IPR003140: Phospholipase/carboxylesterase/thioesterase YP_008823920.1 KO: K15975; InterPro: IPR004360: Glyoxalase/fosfomycin resistance/dioxygenase YP_008823921.1 KO: K03492; InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823922.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component; IPR004796: Phosphotransferase system, cellobiose-specific IIC component YP_008823923.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008823924.1 InterPro: IPR006015: Universal stress protein A; IPR006016: UspA; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008823925.1 KO: K00941: hydroxymethylpyrimidine/ phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]; InterPro: IPR004399: Phosphomethylpyrimidine kinase type-2; IPR013749: Phosphomethylpyrimidine kinase type-1 YP_008823926.1 KO: K06131: cardiolipin synthase [EC:2.7.8.-]; InterPro: IPR001736: Phospholipase D/Transphosphatidylase; IPR015679: Phospholipase D YP_008823927.1 InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR004014: ATPase, P-type cation-transporter, N-terminal; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006068: ATPase, P-type cation-transporter, C-terminal; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A; IPR023306: ATPase, cation-transporting, domain N YP_008823929.1 KO: K01641: hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]; InterPro: IPR013746: Hydroxymethylglutaryl-coenzyme A synthase C-terminal; IPR016038: Thiolase-like, subgroup; IPR016039: Thiolase-like YP_008823930.1 InterPro: IPR013528: Hydroxymethylglutaryl-coenzyme A synthase, N-terminal; IPR016038: Thiolase-like, subgroup; IPR016039: Thiolase-like YP_008823931.1 KO: K00626: acetyl-CoA C-acetyltransferase [EC:2.3.1.9]; InterPro: IPR002155: Thiolase; IPR016038: Thiolase-like, subgroup; IPR016039: Thiolase-like; IPR020610: Thiolase, active site; IPR020613: Thiolase, conserved site; IPR020615: Thiolase, acyl-enzyme intermediate active site; IPR020616: Thiolase, N-terminal; IPR020617: Thiolase, C-terminal YP_008823932.1 KO: K00054: hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]; InterPro: IPR002202: Hydroxymethylglutaryl-CoA reductase, class I/II; IPR004553: Hydroxymethylglutaryl-CoA reductase, bacterial-type; IPR009023: Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding; IPR009029: Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding; IPR023074: Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain; IPR023076: Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site YP_008823933.1 InterPro: IPR001182: Cell cycle protein; IPR018365: Cell cycle, FtsW / RodA / SpoVE, conserved site YP_008823934.1 KO: K05837; InterPro: IPR001182: Cell cycle protein; IPR018365: Cell cycle, FtsW / RodA / SpoVE, conserved site YP_008823935.1 InterPro: IPR000326: Phosphatidic acid phosphatase type 2/haloperoxidase; IPR004474: Cell envelope-related transcriptional attenuator; IPR016118: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal YP_008823938.1 KO: K05885; InterPro: IPR001395: Aldo/keto reductase; IPR018170: Aldo/keto reductase, conserved site; IPR020471: Aldo/keto reductase subgroup; IPR023210: NADP-dependent oxidoreductase domain YP_008823939.1 InterPro: IPR007358: Nucleoid-associated protein NdpA YP_008823940.1 InterPro: IPR006542: Conserved hypothetical protein CHP01655 YP_008823941.1 KO: K00694: cellulose synthase (UDP-forming) [EC:2.4.1.12]; InterPro: IPR001173: Glycosyl transferase, family 2; IPR003919: Cellulose synthase, subunit A; IPR005150: Cellulose synthase YP_008823942.1 KO: K02358: elongation factor Tu; InterPro: IPR000795: Protein synthesis factor, GTP-binding; IPR004160: Translation elongation factor EFTu/EF1A, C-terminal; IPR004161: Translation elongation factor EFTu/EF1A, domain 2; IPR004541: Translation elongation factor EFTu/EF1A, bacterial/organelle; IPR005225: Small GTP-binding protein domain; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR009001: Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal YP_008823943.1 InterPro: IPR003812: Filamentation induced by cAMP/death on curing-related YP_008823944.1 KO: K14205: phosphatidylglycerol lysyltransferase [EC:2.3.2.3]; InterPro: IPR016181: Acyl-CoA N-acyltransferase; IPR022791: Lysylphosphatidylglycerol synthetase/UPF0104; IPR024320: Lysylphosphatidylglycerol synthetase, domain of unknown function DUF2156 YP_008823945.1 KO: K00433 YP_008823946.1 InterPro: IPR023346: Lysozyme-like domain YP_008823947.1 KO: K08974; InterPro: IPR007163: Protein of unknown function DUF368 YP_008823948.1 KO: K01552; InterPro: IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006069: ATPase, P-type cation exchange, alpha subunit; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008823949.1 KO: K02316: DNA primase [EC:2.7.7.-]; InterPro: IPR002694: Zinc finger, CHC2-type; IPR006171: Toprim domain; IPR006295: DNA primase, DnaG; IPR013264: DNA primase, catalytic core, N-terminal; IPR019475: DNA primase, DnaB-helicase binding domain YP_008823950.1 KO: K03086; InterPro: IPR000943: RNA polymerase sigma-70 factor; IPR007127: RNA polymerase sigma factor 70, region 1.1; IPR007624: RNA polymerase sigma-70 region 3; IPR007627: RNA polymerase sigma-70 region 2; IPR007630: RNA polymerase sigma-70 region 4; IPR009042: RNA polymerase sigma-70 region 1.2; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR012760: RNA polymerase sigma factor RpoD, C-terminal; IPR013324: RNA polymerase sigma factor, region 3/4; IPR013325: RNA polymerase sigma factor, region 2; IPR014284: RNA polymerase sigma-70 YP_008823952.1 KO: K00243; InterPro: IPR014464: Predicted nucleic acid binding protein, YitL type YP_008823953.1 KO: K03711; InterPro: IPR002481: Ferric-uptake regulator YP_008823954.1 KO: K04763; InterPro: IPR002104: Integrase, catalytic; IPR004107: Integrase, SAM-like, N-terminal; IPR010998: Integrase, Lambda-type, N-terminal; IPR011010: DNA breaking-rejoining enzyme, catalytic core; IPR011932: Tyrosine recombinase XerD; IPR013762: Integrase-like, catalytic core; IPR023009: Tyrosine recombinase XerC/XerD; IPR023109: Integrase/recombinase, N-terminal YP_008823955.1 KO: K02859; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008823956.1 KO: K05896; InterPro: IPR003768: Prokaryotic chromosome segregation/condensation protein ScpA YP_008823957.1 KO: K06024; InterPro: IPR005234: Chromosome segregation/condensation protein ScpB, prokaryote; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008823958.1 KO: K06178; InterPro: IPR000748: Pseudouridine synthase, RsuA/RluB/E/F; IPR002942: RNA-binding S4; IPR006145: Pseudouridine synthase, RsuA and RluB/C/D/E/F; IPR018496: Pseudouridine synthase, RsuA and RluB/E/F, conserved site; IPR020103: Pseudouridine synthase, catalytic domain YP_008823959.1 InterPro: IPR024529: ECF transporter, substrate-specific component YP_008823960.1 InterPro: IPR018385: C4-dicarboxylate anaerobic carrier-like YP_008823961.1 InterPro: IPR002933: Peptidase M20; IPR010964: Peptidase M20A, peptidase V-related; IPR011650: Peptidase M20, dimerisation YP_008823963.1 KO: K05337; InterPro: IPR010693: Ferredoxin soy-like; IPR017896: 4Fe-4S ferredoxin, iron-sulpur binding domain YP_008823965.1 KO: K03654: ATP-dependent DNA helicase RecQ [EC:3.6.4.12]; InterPro: IPR001650: Helicase, C-terminal; IPR004589: DNA helicase, ATP-dependent, RecQ type; IPR011545: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; IPR014001: DEAD-like helicase YP_008823966.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup; IPR018392: Peptidoglycan-binding lysin domain YP_008823967.1 KO: K00945: cytidylate kinase [EC:2.7.4.14]; InterPro: IPR003136: Cytidylate kinase; IPR011994: Cytidylate kinase domain YP_008823968.1 KO: K02945: small subunit ribosomal protein S1; InterPro: IPR000110: Ribosomal protein S1; IPR003029: Ribosomal protein S1, RNA-binding domain; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR022967: RNA-binding domain, S1 YP_008823969.1 KO: K03977; InterPro: IPR005225: Small GTP-binding protein domain; IPR006073: GTP binding domain; IPR015946: K homology domain-like, alpha/beta; IPR016484: GTP-binding protein EngA YP_008823970.1 KO: K03530; InterPro: IPR000119: Histone-like bacterial DNA-binding protein; IPR010992: IHF-like DNA-binding; IPR020816: Histone-like DNA-binding protein, conserved site; IPR023630: DNA-binding protein HU/Integration host factor YP_008823972.1 InterPro: IPR011990: Tetratricopeptide-like helical; IPR013026: Tetratricopeptide repeat-containing; IPR019734: Tetratricopeptide repeat YP_008823973.1 InterPro: IPR011188: Uncharacterised protein family UPF0302; IPR014957: Bacteriophage SPP1, Gp90, C-terminal; IPR014963: Uncharacterised domain UPF0302, N-terminal YP_008823974.1 InterPro: IPR003740: Protein of unknown function DUF161; IPR019264: Domain of unknown function DUF2179 YP_008823975.1 InterPro: IPR004518: NTP pyrophosphohydrolase MazG, putative catalytic core; IPR012359: NTP pyrophosphohydrolase MazG-related, YpjD; IPR023292: NTP pyrophosphohydrolase-like domain YP_008823976.1 KO: K00974: tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]; InterPro: IPR002646: Poly A polymerase, head domain; IPR023068: tRNA nucleotidyltransferase, firmicutes YP_008823979.1 KO: K03316; InterPro: IPR006153: Cation/H+ exchanger; IPR018421: Cation/H+ exchanger, CvrA-type, bacteria; IPR018422: Cation/H+ exchanger, CPA1 family YP_008823980.1 KO: K15738; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008823981.1 KO: K00560: thymidylate synthase [EC:2.1.1.45]; InterPro: IPR000398: Thymidylate synthase; IPR020940: Thymidylate synthase, active site; IPR023451: Thymidylate synthase/dCMP hydroxymethylase domain YP_008823982.1 KO: K00287: dihydrofolate reductase [EC:1.5.1.3]; InterPro: IPR001796: Dihydrofolate reductase domain; IPR012259: Dihydrofolate reductase; IPR017925: Dihydrofolate reductase conserved site; IPR024072: Dihydrofolate reductase-like domain YP_008823983.1 InterPro: IPR003797: DegV YP_008823984.1 InterPro: IPR001087: Lipase, GDSL; IPR013830: Esterase, SGNH hydrolase-type; IPR013831: Esterase, SGNH hydrolase-type, subgroup YP_008823985.1 InterPro: IPR018672: Protein of unknown function DUF2140 YP_008823986.1 KO: K07304; InterPro: IPR002569: Peptide methionine sulphoxide reductase MsrA YP_008823987.1 InterPro: IPR010673: Uncharacterised protein family UPF0346; IPR023089: YozE-like domain YP_008823988.1 KO: K03100: signal peptidase I [EC:3.4.21.89]; InterPro: IPR000223: Peptidase S26A, signal peptidase I; IPR011056: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain; IPR015927: Peptidase S24/S26A/S26B/S26C; IPR019757: Peptidase S26A, signal peptidase I, lysine active site; IPR019758: Peptidase S26A, signal peptidase I, conserved site; IPR019759: Peptidase S24/S26A/S26B YP_008823989.1 KO: K07032 YP_008823990.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008823991.1 InterPro: IPR002575: Aminoglycoside phosphotransferase; IPR011009: Protein kinase-like domain YP_008823992.1 KO: K14540; InterPro: IPR006073: GTP binding domain; IPR016478: GTPase, MTG1; IPR019991: GTP-binding protein, ribosome biogenesis, YlqF; IPR023179: GTP-binding protein, orthogonal bundle domain YP_008823993.1 KO: K03470: ribonuclease HII [EC:3.1.26.4]; InterPro: IPR001352: Ribonuclease HII/HIII; IPR012337: Ribonuclease H-like domain; IPR024567: Ribonuclease HII/HIII domain YP_008823994.1 KO: K04096; InterPro: IPR003488: DNA recombination-mediator protein A YP_008823995.1 KO: K03168; InterPro: IPR000380: DNA topoisomerase, type IA; IPR003601: DNA topoisomerase, type IA, domain 2; IPR003602: DNA topoisomerase, type IA, DNA-binding; IPR005733: DNA topoisomerase I, bacterial-type; IPR006171: Toprim domain; IPR013497: DNA topoisomerase, type IA, central; IPR013498: DNA topoisomerase, type IA, zn finger; IPR013824: DNA topoisomerase, type IA, central region, subdomain 1; IPR013825: DNA topoisomerase, type IA, central region, subdomain 2; IPR023405: DNA topoisomerase, type IA, core domain; IPR023406: DNA topoisomerase, type IA, active site YP_008823996.1 KO: K04094; InterPro: IPR002218: Glucose-inhibited division protein A-related; IPR004417: Folate-dependent ribothymidyl synthase; IPR020595: Glucose-inhibited division protein A-related, conserved site YP_008823997.1 KO: K03733; InterPro: IPR002104: Integrase, catalytic; IPR004107: Integrase, SAM-like, N-terminal; IPR010998: Integrase, Lambda-type, N-terminal; IPR011010: DNA breaking-rejoining enzyme, catalytic core; IPR011931: Tyrosine recombinase XerC; IPR013762: Integrase-like, catalytic core; IPR023009: Tyrosine recombinase XerC/XerD; IPR023109: Integrase/recombinase, N-terminal YP_008823998.1 KO: K01419; InterPro: IPR001353: Proteasome, subunit alpha/beta; IPR022281: ATP-dependent protease, HslV subunit YP_008823999.1 KO: K03667; InterPro: IPR003593: ATPase, AAA+ type, core; IPR003959: ATPase, AAA-type, core; IPR004491: Heat shock protein HslU; IPR013093: ATPase, AAA-2; IPR019489: Clp ATPase, C-terminal YP_008824000.1 KO: K03706; InterPro: IPR000485: Transcription regulator HTH, AsnC-type; IPR010312: GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013198: GTP-sensing helix-turn-helix, CodY, C-terminal; IPR014154: GTP-sensing transcriptional pleiotropic repressor CodY YP_008824001.1 InterPro: IPR008183: Aldose 1-epimerase; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR014718: Glycoside hydrolase-type carbohydrate-binding, subgroup YP_008824002.1 KO: K08591: glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]; InterPro: IPR003811: Glycerol-3-phosphate acyltransferase, bacteria YP_008824003.1 KO: K06929; InterPro: IPR003781: CoA-binding; IPR016040: NAD(P)-binding domain YP_008824004.1 KO: K02622; InterPro: IPR000565: DNA topoisomerase, type IIA, subunit B; IPR001241: DNA topoisomerase, type IIA; IPR002288: DNA topoisomerase, type IIA, subunit B, C-terminal; IPR003594: ATPase-like, ATP-binding domain; IPR005740: DNA topoisomerase IV, subunit B, Gram-positive; IPR013506: DNA topoisomerase, type IIA, subunit B, domain 2; IPR013759: DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta; IPR013760: DNA topoisomerase, type IIA, central; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR018522: DNA topoisomerase, type IIA, conserved site; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008824005.1 KO: K02621; InterPro: IPR002205: DNA topoisomerase, type IIA, subunit A/C-terminal; IPR005741: DNA topoisomerase IV, subunit A, Gram-positive; IPR006691: DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; IPR013758: DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta; IPR013760: DNA topoisomerase, type IIA, central; IPR024946: Arginine repressor C-terminal-like domain YP_008824006.1 KO: K00656: formate C-acetyltransferase [EC:2.3.1.54]; InterPro: IPR001150: Formate C-acetyltransferase glycine radical; IPR004184: Pyruvate formate-lyase, PFL; IPR005949: Formate acetyltransferase; IPR019777: Formate C-acetyltransferase glycine radical, conserved site YP_008824007.1 KO: K04069; InterPro: IPR001989: Radical-activating enzyme, conserved site; IPR007197: Radical SAM; IPR012838: Pyruvate formate-lyase activating enzyme YP_008824008.1 KO: K15986: manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]; InterPro: IPR001667: Phosphoesterase, RecJ-like; IPR004097: DHHA2; IPR022934: Manganese-dependent inorganic pyrophosphatase, probable YP_008824009.1 InterPro: IPR014924: Protein of unknown function DUF1803 YP_008824010.1 InterPro: IPR019264: Domain of unknown function DUF2179; IPR022930: Uncharacterised protein family UPF0316 YP_008824012.1 KO: K06889 YP_008824013.1 InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008824015.1 InterPro: IPR002085: Alcohol dehydrogenase superfamily, zinc-type; IPR002364: Quinone oxidoreductase/zeta-crystallin, conserved site; IPR011032: GroES-like; IPR013154: Alcohol dehydrogenase GroES-like; IPR016040: NAD(P)-binding domain; IPR020843: Polyketide synthase, enoylreductase YP_008824016.1 InterPro: IPR003740: Protein of unknown function DUF161 YP_008824018.1 KO: K05845: osmoprotectant transport system substrate-binding protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR007210: ABC-type glycine betaine transport system, substrate-binding domain YP_008824019.1 KO: K05847: osmoprotectant transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824020.1 InterPro: IPR007737: M trans-acting positive regulator; IPR013199: Helix-turn-helix Mga, DNA-binding trans-acting positive regulator YP_008824021.1 InterPro: IPR007737: M trans-acting positive regulator; IPR013199: Helix-turn-helix Mga, DNA-binding trans-acting positive regulator YP_008824022.1 InterPro: IPR019931: LPXTG-motif cell wall anchor YP_008824025.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup; IPR018392: Peptidoglycan-binding lysin domain YP_008824026.1 InterPro: IPR007211: Protein of unknown function DUF378 YP_008824030.1 KO: K14260: alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]; InterPro: IPR001176: 1-aminocyclopropane-1-carboxylate synthase; IPR004839: Aminotransferase, class I/classII; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008824031.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding; IPR011990: Tetratricopeptide-like helical YP_008824032.1 KO: K01443: N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]; InterPro: IPR003764: N-acetylglucosamine-6-phosphate deacetylase; IPR006680: Amidohydrolase 1; IPR011059: Metal-dependent hydrolase, composite domain YP_008824033.1 InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative; IPR010499: Bacterial transcription activator, effector binding; IPR011256: Regulatory factor, effector, bacterial YP_008824034.1 KO: K01552; InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR004014: ATPase, P-type cation-transporter, N-terminal; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006068: ATPase, P-type cation-transporter, C-terminal; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008824036.1 KO: K15051 YP_008824038.1 KO: K07192: flotillin; InterPro: IPR001107: Band 7 protein YP_008824039.1 InterPro: IPR010343: Protein of unknown function DUF939 YP_008824040.1 InterPro: IPR010343: Protein of unknown function DUF939; IPR021062: Protein of unknown function DUF939, C-terminal YP_008824041.1 InterPro: IPR000683: Oxidoreductase, N-terminal; IPR004104: Oxidoreductase, C-terminal; IPR016040: NAD(P)-binding domain YP_008824043.1 InterPro: IPR003709: Peptidase M15B/M15C; IPR009045: Hedgehog signalling/DD-peptidase zinc-binding domain YP_008824044.1 InterPro: IPR000423: Flagellar protein FlgJ type-1; IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR013338: Lysozyme domain, subfamily 2 YP_008824045.1 InterPro: IPR011060: Ribulose-phosphate binding barrel; IPR013785: Aldolase-type TIM barrel YP_008824046.1 KO: K03816: xanthine phosphoribosyltransferase [EC:2.4.2.22]; InterPro: IPR000836: Phosphoribosyltransferase; IPR010079: Xanthine phosphoribosyltransferase YP_008824047.1 KO: K16169; InterPro: IPR006042: Xanthine/uracil permease; IPR006043: Xanthine/uracil/vitamin C permease; IPR017588: Xanthine permease YP_008824048.1 KO: K01588: 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]; InterPro: IPR000031: N5-carboxyaminoimidazole ribonucleotide mutase PurE domain YP_008824049.1 KO: K01589: 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]; InterPro: IPR003135: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; IPR005875: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; IPR011054: Rudiment single hybrid motif; IPR011761: ATP-grasp fold; IPR013815: ATP-grasp fold, subdomain 1; IPR013816: ATP-grasp fold, subdomain 2; IPR013817: Pre-ATP-grasp fold; IPR016185: PreATP-grasp-like fold YP_008824050.1 KO: K01756: adenylosuccinate lyase [EC:4.3.2.2]; InterPro: IPR000362: Fumarate lyase; IPR003031: Delta crystallin; IPR004769: Adenylosuccinate lyase; IPR008948: L-Aspartase-like; IPR019468: Adenylosuccinate lyase C-terminal; IPR020557: Fumarate lyase, conserved site; IPR022761: Lyase 1, N-terminal; IPR024083: L-Aspartase-like, N-terminal YP_008824052.1 KO: K01923: phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]; InterPro: IPR001636: SAICAR synthetase; IPR013816: ATP-grasp fold, subdomain 2; IPR018236: SAICAR synthetase, conserved site YP_008824053.1 KO: K01952: phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]; InterPro: IPR003850: Phosphoribosylformylglycinamidine synthetase, PurS subunit YP_008824054.1 KO: K01952: phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]; InterPro: IPR010075: Phosphoribosylformylglycinamidine synthase I; IPR017926: Glutamine amidotransferase type 1 YP_008824055.1 KO: K01952: phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]; InterPro: IPR000728: AIR synthase-related protein; IPR010074: Phosphoribosylformylglycinamidine synthase II; IPR010918: AIR synthase-related protein, C-terminal; IPR016188: PurM, N-terminal-like YP_008824056.1 KO: K00764: amidophosphoribosyltransferase [EC:2.4.2.14]; InterPro: IPR000583: Glutamine amidotransferase, class-II; IPR000836: Phosphoribosyltransferase; IPR005854: Amidophosphoribosyl transferase; IPR017932: Glutamine amidotransferase, type II YP_008824057.1 KO: K01933: phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]; InterPro: IPR000728: AIR synthase-related protein; IPR004733: Phosphoribosylformylglycinamidine cyclo-ligase; IPR010918: AIR synthase-related protein, C-terminal; IPR016188: PurM, N-terminal-like YP_008824058.1 KO: K11175: phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]; InterPro: IPR002376: Formyl transferase, N-terminal; IPR004607: Phosphoribosylglycinamide formyltransferase YP_008824059.1 KO: K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]; InterPro: IPR002695: AICARFT/IMPCHase bienzyme; IPR011607: Methylglyoxal synthase-like domain; IPR016193: Cytidine deaminase-like; IPR024051: AICAR transformylase domain YP_008824060.1 KO: K01945: phosphoribosylamine--glycine ligase [EC:6.3.4.13]; InterPro: IPR000115: Phosphoribosylglycinamide synthetase; IPR011054: Rudiment single hybrid motif; IPR011761: ATP-grasp fold; IPR013815: ATP-grasp fold, subdomain 1; IPR013816: ATP-grasp fold, subdomain 2; IPR013817: Pre-ATP-grasp fold; IPR016185: PreATP-grasp-like fold; IPR020559: Phosphoribosylglycinamide synthetase, conserved site; IPR020560: Phosphoribosylglycinamide synthetase, C-domain; IPR020561: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; IPR020562: Phosphoribosylglycinamide synthetase, N-terminal YP_008824061.1 InterPro: IPR001395: Aldo/keto reductase; IPR020471: Aldo/keto reductase subgroup; IPR023210: NADP-dependent oxidoreductase domain YP_008824063.1 KO: K00364: GMP reductase [EC:1.7.1.7]; InterPro: IPR001093: IMP dehydrogenase/GMP reductase; IPR001295: Dihydroorotate dehydrogenase, conserved site; IPR005994: Guanosine monophosphate reductase 2; IPR006594: LisH dimerisation motif; IPR013785: Aldolase-type TIM barrel; IPR015875: IMP dehydrogenase / GMP reductase, conserved site YP_008824064.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR004839: Aminotransferase, class I/classII; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008824065.1 KO: K00161: pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]; InterPro: IPR001017: Dehydrogenase, E1 component; IPR017596: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit subgroup x YP_008824066.1 KO: K00162: pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]; InterPro: IPR005475: Transketolase-like, pyrimidine-binding domain; IPR005476: Transketolase, C-terminal; IPR009014: Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; IPR015941: Transketolase-like, C-terminal YP_008824067.1 KO: K00627: pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]; InterPro: IPR000089: Biotin/lipoyl attachment; IPR001078: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; IPR003016: 2-oxo acid dehydrogenase, lipoyl-binding site; IPR004167: E3 binding; IPR011053: Single hybrid motif; IPR023213: Chloramphenicol acetyltransferase-like domain YP_008824068.1 KO: K00382: dihydrolipoamide dehydrogenase [EC:1.8.1.4]; InterPro: IPR004099: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; IPR006258: Dihydrolipoamide dehydrogenase; IPR012999: Pyridine nucleotide-disulphide oxidoreductase, class I, active site; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR016156: FAD/NAD-linked reductase, dimerisation; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008824069.1 InterPro: IPR007920: Uncharacterised protein family UPF0223; IPR023324: BH2638-like domain YP_008824070.1 KO: K01092: myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]; InterPro: IPR000760: Inositol monophosphatase YP_008824071.1 KO: K06207; InterPro: IPR000640: Translation elongation factor EFG/EF2, C-terminal; IPR000795: Protein synthesis factor, GTP-binding; IPR004161: Translation elongation factor EFTu/EF1A, domain 2; IPR005225: Small GTP-binding protein domain; IPR006298: GTP-binding protein TypA; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR009022: Elongation factor G/III/V YP_008824072.1 InterPro: IPR019931: LPXTG-motif cell wall anchor YP_008824073.1 KO: K03654: ATP-dependent DNA helicase RecQ [EC:3.6.4.12]; InterPro: IPR001650: Helicase, C-terminal; IPR002121: Helicase/RNase D C-terminal, HRDC domain; IPR004589: DNA helicase, ATP-dependent, RecQ type; IPR006293: DNA helicase, ATP-dependent, RecQ type, bacterial; IPR010997: HRDC-like; IPR011545: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; IPR014001: DEAD-like helicase; IPR018982: RQC domain YP_008824074.1 InterPro: IPR009983: Uncharacterised protein family UPF0358 YP_008824075.1 KO: K03588: cell division protein FtsW; InterPro: IPR001182: Cell cycle protein; IPR018365: Cell cycle, FtsW / RodA / SpoVE, conserved site YP_008824076.1 KO: K01958: pyruvate carboxylase [EC:6.4.1.1]; InterPro: IPR000089: Biotin/lipoyl attachment; IPR000891: Pyruvate carboxyltransferase; IPR003379: Carboxylase, conserved domain; IPR005479: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; IPR005481: Carbamoyl-phosphate synthase, large subunit, N-terminal; IPR005482: Biotin carboxylase, C-terminal; IPR005930: Pyruvate carboxylase; IPR011053: Single hybrid motif; IPR011054: Rudiment single hybrid motif; IPR011761: ATP-grasp fold; IPR011764: Biotin carboxylation domain; IPR013785: Aldolase-type TIM barrel; IPR013815: ATP-grasp fold, subdomain 1; IPR013816: ATP-grasp fold, subdomain 2; IPR013817: Pre-ATP-grasp fold; IPR016185: PreATP-grasp-like fold YP_008824078.1 InterPro: IPR010368: Uncharacterised protein family UPF0342; IPR023378: YheA/YmcA-like domain YP_008824079.1 InterPro: IPR016979: Uncharacterised protein family UPF0298 YP_008824080.1 InterPro: IPR002052: DNA methylase, N-6 adenine-specific, conserved site; IPR004398: RNA methyltransferase, RsmD YP_008824081.1 KO: K00954: pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]; InterPro: IPR001980: Coenzyme A biosynthesis protein; IPR004820: Cytidylyltransferase; IPR004821: Cytidyltransferase-related; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008824082.1 KO: K07177; InterPro: IPR008269: Peptidase S16, Lon C-terminal; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008824084.1 KO: K02237; InterPro: IPR003583: Helix-hairpin-helix DNA-binding motif, class 1; IPR004509: Competence protein ComEA, helix-hairpin-helix domain; IPR010994: RuvA domain 2-like; IPR019554: Soluble ligand binding domain YP_008824085.1 KO: K01493: dCMP deaminase [EC:3.5.4.12]; InterPro: IPR002125: CMP/dCMP deaminase, zinc-binding; IPR013404: Competence operon E, ComEB; IPR015517: Cytidine deaminase; IPR016192: APOBEC/CMP deaminase, zinc-binding; IPR016193: Cytidine deaminase-like; IPR016473: dCMP deaminase YP_008824086.1 KO: K02238; InterPro: IPR001279: Beta-lactamase-like; IPR004477: ComEC/Rec2-related protein; IPR004797: Competence protein ComEC/Rec2 YP_008824087.1 KO: K02340: DNA polymerase III subunit delta [EC:2.7.7.7]; InterPro: IPR005790: DNA polymerase III, delta subunit; IPR008921: DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal; IPR010372: DNA polymerase III, delta YP_008824088.1 KO: K02968: small subunit ribosomal protein S20; InterPro: IPR002583: Ribosomal protein S20 YP_008824091.1 InterPro: IPR007382: Uncharacterised protein family UPF0756, transmembrame YP_008824092.1 InterPro: IPR010738: Protein of unknown function DUF1310 YP_008824093.1 InterPro: IPR002921: Lipase, class 3 YP_008824098.1 KO: K10947; InterPro: IPR005149: Transcription regulator PadR N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824100.1 KO: K06158; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core YP_008824101.1 KO: K06153: undecaprenyl-diphosphatase [EC:3.6.1.27]; InterPro: IPR003824: Bacitracin resistance protein BacA YP_008824102.1 KO: K15634: probable phosphoglycerate mutase [EC:5.4.2.1]; InterPro: IPR013078: Histidine phosphatase superfamily, clade-1 YP_008824103.1 InterPro: IPR001279: Beta-lactamase-like YP_008824104.1 InterPro: IPR001650: Helicase, C-terminal; IPR006554: Helicase-like, DEXD box c2 type; IPR006555: Helicase, ATP-dependent, c2 type; IPR010614: DEAD2; IPR014013: Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type YP_008824105.1 KO: K09767; InterPro: IPR007551: Protein of unknown function DUF520 YP_008824106.1 InterPro: IPR003740: Protein of unknown function DUF161; IPR019264: Domain of unknown function DUF2179 YP_008824107.1 InterPro: IPR002744: Domain of unknown function DUF59 YP_008824108.1 KO: K01817: phosphoribosylanthranilate isomerase [EC:5.3.1.24] YP_008824109.1 InterPro: IPR007374: ASCH domain; IPR009326: Protein of unknown function DUF984; IPR015947: PUA-like domain YP_008824110.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824112.1 KO: K03826; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824114.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008824115.1 KO: K03741; InterPro: IPR014064: Arsenate reductase ArsC; IPR017867: Protein-tyrosine phosphatase, low molecular weight; IPR023485: Phosphotyrosine protein phosphatase I superfamily YP_008824116.1 InterPro: IPR012550: Protein of unknown function DUF1706 YP_008824117.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup; IPR018392: Peptidoglycan-binding lysin domain YP_008824118.1 InterPro: IPR006015: Universal stress protein A; IPR006016: UspA; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008824123.1 InterPro: IPR006542: Conserved hypothetical protein CHP01655 YP_008824125.1 InterPro: IPR016997: Uncharacterised conserved protein UCP032442 YP_008824128.1 KO: K07078; InterPro: IPR000415: Nitroreductase-like YP_008824129.1 KO: K03305; InterPro: IPR000109: Oligopeptide transporter; IPR005279: Amino acid/peptide transporter family; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR018456: PTR2 family proton/oligopeptide symporter, conserved site; IPR020846: Major facilitator superfamily domain YP_008824130.1 InterPro: IPR014141: DNA helicase subunit RexB YP_008824131.1 InterPro: IPR000212: DNA helicase, UvrD/REP type; IPR011335: Restriction endonuclease, type II-like; IPR011604: Exonuclease, phage-type/RecB, C-terminal; IPR014016: Helicase, superfamily 1, UvrD-related; IPR014017: DNA helicase, UvrD-like, C-terminal; IPR014152: DNA helicase subunit AddA YP_008824132.1 InterPro: IPR002577: Helix-turn-helix, HxlR type; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824133.1 KO: K01889: phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]; InterPro: IPR002319: Phenylalanyl-tRNA synthetase; IPR004188: Phenylalanyl-tRNA synthetase, class II, N-terminal; IPR004529: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR010978: tRNA-binding arm; IPR022911: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial YP_008824134.1 KO: K01890: phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]; InterPro: IPR002547: tRNA-binding domain; IPR004532: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; IPR005121: Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; IPR005146: B3/B4 tRNA-binding domain; IPR005147: tRNA synthetase, B5-domain; IPR009061: DNA binding domain, putative; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR020825: Phenylalanyl-tRNA synthetase, B3/B4 YP_008824135.1 KO: K01867: tryptophanyl-tRNA synthetase [EC:6.1.1.2]; InterPro: IPR001412: Aminoacyl-tRNA synthetase, class I, conserved site; IPR002305: Aminoacyl-tRNA synthetase, class Ic; IPR002306: Tryptophanyl-tRNA synthetase; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008824136.1 KO: K10041: putative glutamine transport system ATP-binding protein [EC:3.6.3.-]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824137.1 KO: K10039: putative glutamine transport system substrate-binding protein; InterPro: IPR001320: Ionotropic glutamate receptor; IPR001638: Extracellular solute-binding protein, family 3 YP_008824138.1 KO: K10040: putative glutamine transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR010065: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YP_008824139.1 KO: K02029; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR010065: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YP_008824140.1 KO: K01776: glutamate racemase [EC:5.1.1.3]; InterPro: IPR001920: Asp/Glu racemase; IPR004391: Glutamate racemase; IPR015942: Asp/Glu/hydantoin racemase; IPR018187: Asp/Glu racemase, active site YP_008824141.1 InterPro: IPR001247: Exoribonuclease, phosphorolytic domain 1; IPR002381: Ribonuclease phosphorolytic, bacterial-type; IPR002637: Ham1-like protein; IPR015847: Exoribonuclease, phosphorolytic domain 2; IPR018336: Ribonuclease PH, conserved site; IPR020568: Ribosomal protein S5 domain 2-type fold; IPR020922: Nucleoside-triphosphatase YP_008824142.1 KO: K07095; InterPro: IPR000979: Phosphodiesterase MJ0936; IPR024654: Calcineurin-like phosphoesterase superfamily domain YP_008824143.1 InterPro: IPR000644: Cystathionine beta-synthase, core YP_008824144.1 KO: K03442; InterPro: IPR006685: Mechanosensitive ion channel MscS; IPR010920: Like-Sm ribonucleoprotein (LSM)-related domain; IPR011014: Mechanosensitive ion channel MscS, transmembrane-2; IPR011066: Mechanosensitive ion channel MscS, C-terminal YP_008824145.1 KO: K00826: branched-chain amino acid aminotransferase [EC:2.6.1.42]; InterPro: IPR001544: Aminotransferase, class IV; IPR005786: Branched-chain amino acid aminotransferase II; IPR018300: Aminotransferase, class IV, conserved site YP_008824146.1 KO: K00208: enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]; InterPro: IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR016040: NAD(P)-binding domain YP_008824147.1 KO: K02372: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]; InterPro: IPR010084: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; IPR013114: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_008824148.1 KO: K03767; InterPro: IPR002130: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain; IPR020892: Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site YP_008824149.1 KO: K09963; InterPro: IPR002130: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain; IPR008589: Protein of unknown function DUF871, prokaryotic; IPR013785: Aldolase-type TIM barrel; IPR017853: Glycoside hydrolase, superfamily YP_008824150.1 KO: K06889 YP_008824151.1 KO: K03979; InterPro: IPR005225: Small GTP-binding protein domain; IPR006073: GTP binding domain; IPR006074: GTP1/OBG, conserved site; IPR006169: GTP1/OBG domain; IPR014100: GTP-binding protein Obg/CgtA; IPR015349: GTP-binding protein GTP1/OBG, C-terminal YP_008824153.1 KO: K00784: ribonuclease Z [EC:3.1.26.11]; InterPro: IPR013471: Ribonuclease Z YP_008824154.1 KO: K07124; InterPro: IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR016040: NAD(P)-binding domain; IPR020904: Short-chain dehydrogenase/reductase, conserved site YP_008824155.1 InterPro: IPR010445: Protein of unknown function DUF1049 YP_008824156.1 KO: K07462: single-stranded-DNA-specific exonuclease [EC:3.1.-.-]; InterPro: IPR001667: Phosphoesterase, RecJ-like; IPR003156: Phosphoesterase, DHHA1; IPR004610: Bacterial RecJ exonuclease; IPR018779: Single-stranded-DNA-specific exonuclease RecJ, C-terminal YP_008824157.1 KO: K00759: adenine phosphoribosyltransferase [EC:2.4.2.7]; InterPro: IPR000836: Phosphoribosyltransferase; IPR005764: Adenine phosphoribosyl transferase YP_008824159.1 KO: K01356; InterPro: IPR006197: Peptidase S24, LexA-like; IPR006199: LexA repressor, DNA-binding domain; IPR006200: Peptidase S24, LexA repressor; IPR011056: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR015927: Peptidase S24/S26A/S26B/S26C; IPR019759: Peptidase S24/S26A/S26B YP_008824160.1 InterPro: IPR009242: Uncharacterised protein family UPF0291; IPR023218: UPF0291 structural domain YP_008824161.1 KO: K00615: transketolase [EC:2.2.1.1]; InterPro: IPR005474: Transketolase, N-terminal; IPR005475: Transketolase-like, pyrimidine-binding domain; IPR005476: Transketolase, C-terminal; IPR005478: Transketolase, bacterial-like; IPR009014: Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; IPR015941: Transketolase-like, C-terminal; IPR020826: Transketolase binding site YP_008824162.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup; IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR013338: Lysozyme domain, subfamily 2; IPR018392: Peptidoglycan-binding lysin domain YP_008824163.1 KO: K01738: cysteine synthase A [EC:2.5.1.47]; InterPro: IPR001216: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; IPR001926: Pyridoxal phosphate-dependent enzyme, beta subunit; IPR005856: Cysteine synthase K/M; IPR005859: Cysteine synthase A YP_008824164.1 KO: K09825; InterPro: IPR002481: Ferric-uptake regulator YP_008824165.1 KO: K00356: NADH dehydrogenase [EC:1.6.99.3]; InterPro: IPR004099: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR016156: FAD/NAD-linked reductase, dimerisation; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008824167.1 KO: K02086; InterPro: IPR006343: Replication protein, DnaD/DnaB domain YP_008824168.1 KO: K10773: endonuclease III [EC:4.2.99.18]; InterPro: IPR000445: Helix-hairpin-helix motif; IPR003265: HhH-GPD domain; IPR003651: Endonuclease III-like, iron-sulphur cluster loop motif; IPR004035: Endonuclease III, iron-sulphur binding site; IPR004036: Endonuclease III, conserved site-2; IPR005759: Endonuclease III/Nth; IPR011257: DNA glycosylase; IPR023170: Helix-turn-helix, base-excision DNA repair, C-terminal YP_008824169.1 InterPro: IPR016878: Uncharacterised conserved protein UCP028288 YP_008824170.1 InterPro: IPR007737: M trans-acting positive regulator YP_008824171.1 KO: K03933; InterPro: IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR004302: Chitin-binding, domain 3; IPR013783: Immunoglobulin-like fold; IPR014756: Immunoglobulin E-set YP_008824172.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008824174.1 InterPro: IPR003688: Ti-type conjugative transfer system, TraG-like YP_008824176.1 InterPro: IPR007688: Conjugal transfer, TrbL/VirB6 YP_008824177.1 InterPro: IPR024414: Uncharacterised protein family PrgI YP_008824180.1 InterPro: IPR007921: Cysteine, histidine-dependent amidohydrolase/peptidase; IPR023346: Lysozyme-like domain YP_008824188.1 InterPro: IPR005046: Protein of unknown function DUF285, lipoprotein predicted; IPR011889: Bacterial surface protein 26-residue repeat YP_008824192.1 KO: K05366: penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]; InterPro: IPR001264: Glycosyl transferase, family 51; IPR001460: Penicillin-binding protein, transpeptidase; IPR011816: Penicillin-binding protein 1A; IPR012338: Beta-lactamase/transpeptidase-like YP_008824193.1 KO: K03700; InterPro: IPR004612: Resolvase, Holliday junction-type, RecU; IPR011335: Restriction endonuclease, type II-like YP_008824194.1 InterPro: IPR010697: Uncharacterised conserved protein UPF0398; IPR024718: Domain of unknown function DUF1273 YP_008824195.1 InterPro: IPR007793: DivIVA; IPR011229: Cell cycle protein GpsB; IPR019933: DivIVA domain YP_008824196.1 KO: K07444; InterPro: IPR000241: Putative RNA methylase; IPR002052: DNA methylase, N-6 adenine-specific, conserved site; IPR004114: THUMP YP_008824197.1 InterPro: IPR007374: ASCH domain; IPR009326: Protein of unknown function DUF984; IPR015947: PUA-like domain YP_008824198.1 KO: K01299; InterPro: IPR001333: Peptidase M32, carboxypeptidase Taq metallopeptidase YP_008824199.1 KO: K06950; InterPro: IPR003607: Metal-dependent phosphohydrolase, HD domain; IPR006674: Metal-dependent phosphohydrolase, HD subdomain; IPR023279: HD domain YP_008824201.1 InterPro: IPR006976: VanZ-like; IPR010432: RDD; IPR021192: Uncharacterised conserved protein UCP031578, VanZ/RDD-type YP_008824202.1 InterPro: IPR001650: Helicase, C-terminal; IPR011545: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; IPR014001: DEAD-like helicase; IPR014014: RNA helicase, DEAD-box type, Q motif YP_008824203.1 KO: K00680: [EC:2.3.1.-]; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824204.1 KO: K01872: alanyl-tRNA synthetase [EC:6.1.1.7]; InterPro: IPR002318: Alanyl-tRNA synthetase, class IIc; IPR003156: Phosphoesterase, DHHA1; IPR012947: Threonyl/alanyl tRNA synthetase, SAD; IPR018162: Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain; IPR018163: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain; IPR018164: Alanyl-tRNA synthetase, class IIc, N-terminal; IPR018165: Alanyl-tRNA synthetase, class IIc, core domain YP_008824205.1 InterPro: IPR024529: ECF transporter, substrate-specific component YP_008824206.1 InterPro: IPR002524: Cation efflux protein YP_008824207.1 KO: K03469: ribonuclease HI [EC:3.1.26.4]; InterPro: IPR002156: Ribonuclease H domain; IPR012337: Ribonuclease H-like domain YP_008824208.1 InterPro: IPR020215: Pore-forming protein, EbsA YP_008824209.1 KO: K03704; InterPro: IPR002059: Cold-shock protein, DNA-binding; IPR011129: Cold shock protein; IPR012156: Cold shock, CspA; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR019844: Cold-shock conserved site YP_008824210.1 KO: K01938: formate--tetrahydrofolate ligase [EC:6.3.4.3]; InterPro: IPR000559: Formate-tetrahydrofolate ligase, FTHFS; IPR020628: Formate-tetrahydrofolate ligase, FTHFS, conserved site YP_008824215.1 KO: K07729; InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008824218.1 InterPro: IPR000644: Cystathionine beta-synthase, core YP_008824219.1 KO: K03101: signal peptidase II [EC:3.4.23.36]; InterPro: IPR001872: Peptidase A8, signal peptidase II YP_008824220.1 KO: K06180; InterPro: IPR002942: RNA-binding S4; IPR006145: Pseudouridine synthase, RsuA and RluB/C/D/E/F; IPR006224: Pseudouridine synthase, RluC/RluD, conserved site; IPR006225: Pseudouridine synthase, RluC/RluD; IPR020103: Pseudouridine synthase, catalytic domain YP_008824222.1 KO: K02825: pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]; InterPro: IPR000836: Phosphoribosyltransferase; IPR023050: Bifunctional protein PyrR YP_008824223.1 KO: K02824; InterPro: IPR006042: Xanthine/uracil permease; IPR006043: Xanthine/uracil/vitamin C permease YP_008824224.1 KO: K00609: aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]; InterPro: IPR002082: Aspartate carbamoyltransferase, eukaryotic; IPR006130: Aspartate/ornithine carbamoyltransferase; IPR006131: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; IPR006132: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YP_008824225.1 KO: K01465: dihydroorotase [EC:3.5.2.3]; InterPro: IPR002195: Dihydroorotase, conserved site; IPR004722: Dihydroorotase; IPR006680: Amidohydrolase 1; IPR011059: Metal-dependent hydrolase, composite domain YP_008824226.1 KO: K01956: carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]; InterPro: IPR002474: Carbamoyl-phosphate synthase, small subunit N-terminal domain; IPR006274: Carbamoyl-phosphate synthase, small subunit; IPR017926: Glutamine amidotransferase type 1 YP_008824227.1 KO: K01955: carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]; InterPro: IPR005479: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; IPR005480: Carbamoyl-phosphate synthetase, large subunit oligomerisation domain; IPR005481: Carbamoyl-phosphate synthase, large subunit, N-terminal; IPR005483: Carbamoyl-phosphate synthase, large subunit, CPS-domain; IPR006275: Carbamoyl-phosphate synthase, large subunit; IPR011607: Methylglyoxal synthase-like domain; IPR011761: ATP-grasp fold; IPR013815: ATP-grasp fold, subdomain 1; IPR013816: ATP-grasp fold, subdomain 2; IPR013817: Pre-ATP-grasp fold; IPR016185: PreATP-grasp-like fold YP_008824228.1 KO: K02823; InterPro: IPR001433: Oxidoreductase FAD/NAD(P)-binding; IPR008333: Oxidoreductase, FAD-binding domain; IPR012165: Cytochrome-c3 hydrogenase, gamma subunit; IPR017927: Ferredoxin reductase-type FAD-binding domain; IPR017938: Riboflavin synthase-like beta-barrel; IPR019480: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; IPR023455: Dihydroorotate dehydrogenase electron transfer subunit YP_008824229.1 KO: K00226: dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]; InterPro: IPR001295: Dihydroorotate dehydrogenase, conserved site; IPR005720: Dihydroorotate dehydrogenase domain; IPR012135: Dihydroorotate dehydrogenase, class 1/ 2; IPR013785: Aldolase-type TIM barrel; IPR024920: Dihydroorotate dehydrogenase, class 1 YP_008824230.1 KO: K01591: orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]; InterPro: IPR001754: Orotidine 5'-phosphate decarboxylase domain; IPR011060: Ribulose-phosphate binding barrel; IPR013785: Aldolase-type TIM barrel; IPR014732: Orotidine 5'-phosphate decarboxylase; IPR018089: Orotidine 5'-phosphate decarboxylase, active site YP_008824231.1 KO: K00762: orotate phosphoribosyltransferase [EC:2.4.2.10]; InterPro: IPR000836: Phosphoribosyltransferase; IPR004467: Orotate phosphoribosyl transferase, clade 1; IPR023031: Orotate phosphoribosyltransferase YP_008824232.1 KO: K07023; InterPro: IPR023279: HD domain YP_008824233.1 KO: K01674: carbonic anhydrase [EC:4.2.1.1]; InterPro: IPR001148: Alpha carbonic anhydrase; IPR023561: Carbonic anhydrase, alpha-class YP_008824234.1 InterPro: IPR000847: Transcription regulator HTH, LysR; IPR005119: LysR, substrate-binding; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824235.1 InterPro: IPR004991: Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2; IPR023307: Aerolysin-like toxin, beta complex domain YP_008824236.1 InterPro: IPR008532: Domain of unknown function DUF814; IPR008616: Fibronectin-binding A, N-terminal YP_008824238.1 KO: K01989; InterPro: IPR007487: ABC transporter, substrate-binding protein YP_008824239.1 KO: K05832; InterPro: IPR001851: ABC transporter, permease YP_008824240.1 KO: K05833; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824241.1 KO: K00014: shikimate dehydrogenase [EC:1.1.1.25]; InterPro: IPR006151: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; IPR011342: Shikimate dehydrogenase; IPR013708: Shikimate dehydrogenase substrate binding, N-terminal; IPR016040: NAD(P)-binding domain; IPR022893: Shikimate, quinate/shikimate dehydrogenase YP_008824242.1 InterPro: IPR004474: Cell envelope-related transcriptional attenuator YP_008824243.1 InterPro: IPR006442: Bacteriophage P1, prevent-host-death protein YP_008824259.1 KO: K03169; InterPro: IPR000380: DNA topoisomerase, type IA; IPR003601: DNA topoisomerase, type IA, domain 2; IPR003602: DNA topoisomerase, type IA, DNA-binding; IPR005738: DNA topoisomerase III, bacterial-type; IPR006171: Toprim domain; IPR013497: DNA topoisomerase, type IA, central; IPR013824: DNA topoisomerase, type IA, central region, subdomain 1; IPR013825: DNA topoisomerase, type IA, central region, subdomain 2; IPR023405: DNA topoisomerase, type IA, core domain; IPR023406: DNA topoisomerase, type IA, active site YP_008824261.1 KO: K03828; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824262.1 InterPro: IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR004014: ATPase, P-type cation-transporter, N-terminal; IPR006069: ATPase, P-type cation exchange, alpha subunit; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008824263.1 InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006068: ATPase, P-type cation-transporter, C-terminal; IPR023214: HAD-like domain; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023306: ATPase, cation-transporting, domain N YP_008824266.1 KO: K00016: L-lactate dehydrogenase [EC:1.1.1.27]; InterPro: IPR001236: Lactate/malate dehydrogenase, N-terminal; IPR001557: L-lactate/malate dehydrogenase; IPR011304: L-lactate dehydrogenase; IPR015955: Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; IPR016040: NAD(P)-binding domain; IPR018177: L-lactate dehydrogenase, active site; IPR022383: Lactate/malate dehydrogenase, C-terminal YP_008824271.1 InterPro: IPR013738: Beta-galactosidase trimerisation; IPR013739: Beta-galactosidase C-terminal YP_008824272.1 KO: K12308: beta-galactosidase [EC:3.2.1.23]; InterPro: IPR013529: Glycoside hydrolase, family 42, N-terminal; IPR013738: Beta-galactosidase trimerisation; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily YP_008824274.1 KO: K07407: alpha-galactosidase [EC:3.2.1.22]; InterPro: IPR000111: Glycoside hydrolase, clan GH-D; IPR002252: Glycoside hydrolase, family 36; IPR013785: Aldolase-type TIM barrel; IPR017853: Glycoside hydrolase, superfamily YP_008824275.1 InterPro: IPR021701: Domain of unknown function DUF3284 YP_008824276.1 InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008824277.1 KO: K02529; InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008824278.1 InterPro: IPR000683: Oxidoreductase, N-terminal; IPR016040: NAD(P)-binding domain YP_008824279.1 InterPro: IPR000281: Helix-turn-helix protein RpiR; IPR001347: Sugar isomerase (SIS); IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824280.1 KO: K15634: probable phosphoglycerate mutase [EC:5.4.2.1]; InterPro: IPR001345: Phosphoglycerate/bisphosphoglycerate mutase, active site; IPR013078: Histidine phosphatase superfamily, clade-1 YP_008824281.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal YP_008824282.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824283.1 KO: K02004; InterPro: IPR003838: Permease FtsX-like YP_008824286.1 InterPro: IPR018966: VTC domain YP_008824287.1 KO: K14983: two-component system, OmpR family, response regulator CiaR; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008824288.1 KO: K14982: two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008824289.1 InterPro: IPR002104: Integrase, catalytic; IPR011010: DNA breaking-rejoining enzyme, catalytic core; IPR013762: Integrase-like, catalytic core YP_008824290.1 InterPro: IPR000873: AMP-dependent synthetase/ligase; IPR020845: AMP-binding, conserved site YP_008824291.1 KO: K00868: pyridoxine kinase [EC:2.7.1.35]; InterPro: IPR013749: Phosphomethylpyrimidine kinase type-1 YP_008824292.1 InterPro: IPR009825: Protein of unknown function DUF1393 YP_008824293.1 InterPro: IPR006340: Uncharacterised protein family UPF0340 YP_008824294.1 KO: K01187: alpha-glucosidase [EC:3.2.1.20]; InterPro: IPR006046: Glycoside hydrolase, family 13; IPR006047: Glycosyl hydrolase, family 13, catalytic domain; IPR006589: Glycosyl hydrolase, family 13, subfamily, catalytic domain; IPR013780: Glycosyl hydrolase, family 13, all-beta; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR015902: Alpha amylase; IPR017853: Glycoside hydrolase, superfamily YP_008824295.1 InterPro: IPR002035: von Willebrand factor, type A; IPR011704: ATPase, dynein-related, AAA domain YP_008824297.1 InterPro: IPR003797: DegV YP_008824298.1 InterPro: IPR002797: Polysaccharide biosynthesis protein; IPR004268: Flagellin assembly, membrane protein MviN YP_008824299.1 InterPro: IPR008407: Branched-chain amino acid transport, AzlD YP_008824300.1 InterPro: IPR011606: Branched-chain amino acid transport, permease YP_008824301.1 InterPro: IPR002524: Cation efflux protein YP_008824307.1 InterPro: IPR014999: Uncharacterised protein family UPF0371 YP_008824308.1 KO: K11535; InterPro: IPR002668: Na dependent nucleoside transporter; IPR008276: Concentrative nucleoside transporter; IPR011657: Na dependent nucleoside transporter, C-terminal YP_008824309.1 KO: K00942: guanylate kinase [EC:2.7.4.8]; InterPro: IPR008144: Guanylate kinase; IPR008145: Guanylate kinase/L-type calcium channel YP_008824310.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824313.1 InterPro: IPR000120: Amidase; IPR020556: Amidase, conserved site; IPR023631: Amidase signature domain YP_008824314.1 KO: K00226: dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]; InterPro: IPR001295: Dihydroorotate dehydrogenase, conserved site; IPR005720: Dihydroorotate dehydrogenase domain; IPR012135: Dihydroorotate dehydrogenase, class 1/ 2; IPR013785: Aldolase-type TIM barrel; IPR024920: Dihydroorotate dehydrogenase, class 1 YP_008824315.1 InterPro: IPR005075: Peptidase M4, propeptide, PepSY; IPR021533: Domain of unknown function DUF2874 YP_008824316.1 KO: K00574; InterPro: IPR003333: Mycolic acid cyclopropane synthase YP_008824318.1 KO: K10110: maltose/maltodextrin transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824319.1 KO: K10109: maltose/maltodextrin transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824320.1 KO: K10108: maltose/maltodextrin transport system substrate-binding protein; InterPro: IPR006059: Bacterial extracellular solute-binding, family 1; IPR006060: Maltose binding protein YP_008824321.1 InterPro: IPR004185: Glycoside hydrolase, family 13, N-terminal Ig-like domain; IPR006046: Glycoside hydrolase, family 13; IPR006047: Glycosyl hydrolase, family 13, catalytic domain; IPR006589: Glycosyl hydrolase, family 13, subfamily, catalytic domain; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR013783: Immunoglobulin-like fold; IPR014756: Immunoglobulin E-set; IPR015902: Alpha amylase; IPR017853: Glycoside hydrolase, superfamily YP_008824322.1 KO: K02549: O-succinylbenzoate synthase [EC:4.2.1.113]; InterPro: IPR001354: Mandelate racemase/muconate lactonizing enzyme; IPR010197: O-succinylbenzoic acid (OSB) synthetase, low GC Gram-positive bacteria/archaea; IPR013341: Mandelate racemase/muconate lactonizing enzyme, N-terminal; IPR013342: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_008824323.1 KO: K08680: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]; InterPro: IPR000073: Alpha/beta hydrolase fold-1; IPR022485: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YP_008824324.1 KO: K02551: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase [EC:2.2.1.9]; InterPro: IPR004433: Menaquinone biosynthesis protein MenD; IPR011766: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; IPR012001: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain YP_008824325.1 KO: K02552: menaquinone-specific isochorismate synthase [EC:5.4.4.2]; InterPro: IPR004561: Isochorismate synthase; IPR005801: ADC synthase; IPR015890: Chorismate binding, C-terminal YP_008824326.1 KO: K01911: O-succinylbenzoic acid--CoA ligase [EC:6.2.1.26]; InterPro: IPR000873: AMP-dependent synthetase/ligase; IPR010192: O-succinylbenzoate-CoA ligase; IPR020845: AMP-binding, conserved site; IPR023015: 2-succinylbenzoate-CoA ligase, firmicutes YP_008824327.1 KO: K01661: naphthoate synthase [EC:4.1.3.36]; InterPro: IPR001753: Crotonase, core; IPR010198: Naphthoate synthase YP_008824329.1 InterPro: IPR002502: N-acetylmuramoyl-L-alanine amidase domain; IPR013247: SH3, type 3 YP_008824330.1 InterPro: IPR002502: N-acetylmuramoyl-L-alanine amidase domain YP_008824331.1 InterPro: IPR009708: Bacteriophage A118, holin YP_008824333.1 InterPro: IPR006524: Transcription activator, ArpU family YP_008824335.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008824337.1 InterPro: IPR003736: Phenylacetic acid degradation-related protein; IPR006683: Thioesterase superfamily YP_008824338.1 InterPro: IPR003740: Protein of unknown function DUF161; IPR019264: Domain of unknown function DUF2179 YP_008824339.1 InterPro: IPR003718: Peroxiredoxin, OsmC-like protein; IPR015946: K homology domain-like, alpha/beta; IPR019953: Peroxiredoxin, organic hydroperoxide resistance-related YP_008824340.1 InterPro: IPR000835: Transcription regulator HTH, MarR-type; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824341.1 KO: K01442: choloylglycine hydrolase [EC:3.5.1.24]; InterPro: IPR003199: Choloylglycine hydrolase YP_008824342.1 InterPro: IPR019931: LPXTG-motif cell wall anchor YP_008824343.1 InterPro: IPR007737: M trans-acting positive regulator YP_008824344.1 InterPro: IPR014580: Uncharacterised conserved protein UCP033199; IPR023204: SP1917 domain YP_008824346.1 InterPro: IPR004771: K+/H+ exchanger; IPR006153: Cation/H+ exchanger YP_008824348.1 InterPro: IPR001460: Penicillin-binding protein, transpeptidase; IPR005311: Penicillin-binding protein, dimerisation domain; IPR007887: NTF2-like N-terminal transpeptidase; IPR012338: Beta-lactamase/transpeptidase-like YP_008824349.1 InterPro: IPR004474: Cell envelope-related transcriptional attenuator YP_008824350.1 InterPro: IPR002563: Flavin reductase-like, FMN-binding; IPR009002: FMN-binding split barrel-related; IPR012349: FMN-binding split barrel YP_008824351.1 InterPro: IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR004302: Chitin-binding, domain 3; IPR013783: Immunoglobulin-like fold; IPR014756: Immunoglobulin E-set YP_008824353.1 KO: K06867; InterPro: IPR002110: Ankyrin repeat; IPR020683: Ankyrin repeat-containing domain YP_008824354.1 KO: K01119: 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]; InterPro: IPR004843: Metallophosphoesterase domain; IPR006146: 5'-Nucleotidase, conserved site; IPR006179: 5'-Nucleotidase/apyrase; IPR008334: 5'-Nucleotidase, C-terminal YP_008824355.1 KO: K02027; InterPro: IPR006059: Bacterial extracellular solute-binding, family 1 YP_008824356.1 InterPro: IPR001279: Beta-lactamase-like; IPR011108: RNA-metabolising metallo-beta-lactamase YP_008824357.1 KO: K02026; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824358.1 KO: K02025; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824359.1 KO: K02023; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR008995: Molybdate/tungstate binding; IPR013611: Transport-associated OB, type 2 YP_008824360.1 InterPro: IPR007341: Transglycosylase-associated protein YP_008824361.1 InterPro: IPR005531: Alkaline shock protein Asp23 YP_008824362.1 InterPro: IPR018730: Protein of unknown function DUF2273 YP_008824366.1 InterPro: IPR006741: Accessory gene regulator B YP_008824367.1 KO: K07707: two-component system, AgrA family, response regulator AgrA; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR007492: LytTr, DNA-binding domain; IPR011006: CheY-like superfamily YP_008824368.1 KO: K07706: two-component system, AgrA family, sensor histidine kinase AgrC [EC:2.7.13.-]; InterPro: IPR003594: ATPase-like, ATP-binding domain YP_008824369.1 InterPro: IPR021396: Protein of unknown function DUF3036 YP_008824370.1 KO: K07727; InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008824372.1 InterPro: IPR007737: M trans-acting positive regulator; IPR013199: Helix-turn-helix Mga, DNA-binding trans-acting positive regulator; IPR018356: Transcription regulator, HTH DeoR-type, conserved site YP_008824373.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008824377.1 InterPro: IPR007341: Transglycosylase-associated protein YP_008824378.1 InterPro: IPR005531: Alkaline shock protein Asp23 YP_008824379.1 InterPro: IPR018730: Protein of unknown function DUF2273 YP_008824381.1 KO: K00540; InterPro: IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR016040: NAD(P)-binding domain; IPR020904: Short-chain dehydrogenase/reductase, conserved site YP_008824382.1 InterPro: IPR002523: Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB YP_008824383.1 InterPro: IPR000361: FeS cluster biogenesis YP_008824384.1 InterPro: IPR002495: Glycosyl transferase, family 8 YP_008824385.1 InterPro: IPR002495: Glycosyl transferase, family 8 YP_008824386.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR006379: HAD-superfamily hydrolase, subfamily IIB; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008824387.1 InterPro: IPR000868: Isochorismatase-like YP_008824389.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008824390.1 InterPro: IPR004260: Pyrimidine dimer DNA glycosylase; IPR012650: Conserved hypothetical protein CHP02328 YP_008824391.1 KO: K03704; InterPro: IPR002059: Cold-shock protein, DNA-binding; IPR011129: Cold shock protein; IPR012156: Cold shock, CspA; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR019844: Cold-shock conserved site YP_008824392.1 InterPro: IPR005025: NADPH-dependent FMN reductase YP_008824395.1 KO: K01227: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]; InterPro: IPR000421: Coagulation factor 5/8 C-terminal type domain; IPR000601: PKD domain; IPR005201: Glycoside hydrolase, family 85; IPR008979: Galactose-binding domain-like; IPR022409: PKD/Chitinase domain YP_008824396.1 InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative YP_008824397.1 InterPro: IPR010739: Protein of unknown function DUF1312; IPR024045: NusG, domain 2 YP_008824399.1 KO: K02911: large subunit ribosomal protein L32; InterPro: IPR002677: Ribosomal protein L32p; IPR011332: Ribosomal protein, zinc-binding domain YP_008824400.1 KO: K02954: small subunit ribosomal protein S14; InterPro: IPR001209: Ribosomal protein S14; IPR023036: Ribosomal protein S14, bacterial/plastid YP_008824403.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824404.1 InterPro: IPR003838: Permease FtsX-like YP_008824405.1 KO: K03596: GTP-binding protein LepA; InterPro: IPR000640: Translation elongation factor EFG/EF2, C-terminal; IPR000795: Protein synthesis factor, GTP-binding; IPR004161: Translation elongation factor EFTu/EF1A, domain 2; IPR005225: Small GTP-binding protein domain; IPR006297: Elongation factor 4; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR009022: Elongation factor G/III/V; IPR013842: GTP-binding protein LepA, C-terminal YP_008824406.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824407.1 InterPro: IPR007710: Nucleoside 2-deoxyribosyltransferase YP_008824409.1 InterPro: IPR010651: Sugar transport YP_008824410.1 InterPro: IPR000602: Glycoside hydrolase, family 38, core; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR011330: Glycoside hydrolase/deacetylase, beta/alpha-barrel; IPR015341: Glycoside hydrolase, family 38, central domain YP_008824411.1 KO: K02770: PTS system, fructose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR006327: Phosphotransferase system, fructose IIC component; IPR013014: Phosphotransferase system, EIIC component, type 2 YP_008824412.1 KO: K02769: PTS system, fructose-specific IIB component [EC:2.7.1.69]; InterPro: IPR003353: Phosphotransferase system, fructose-specific IIB subunit; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2 YP_008824413.1 KO: K02768: PTS system, fructose-specific IIA component [EC:2.7.1.69]; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR004715: Phosphotransferase system, IIA component fructose subfamily; IPR016152: Phosphotransferase/anion transporter YP_008824414.1 InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR011608: PRD; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR016152: Phosphotransferase/anion transporter YP_008824415.1 KO: K03695; InterPro: IPR001270: Chaperonin ClpA/B; IPR003593: ATPase, AAA+ type, core; IPR003959: ATPase, AAA-type, core; IPR004176: Clp, N-terminal; IPR013093: ATPase, AAA-2; IPR017730: Chaperonin ClpB; IPR018368: Chaperonin ClpA/B, conserved site; IPR019489: Clp ATPase, C-terminal; IPR023150: Double Clp-N motif YP_008824416.1 InterPro: IPR022787: Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase YP_008824418.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component; IPR004796: Phosphotransferase system, cellobiose-specific IIC component YP_008824419.1 KO: K02760: PTS system, cellobiose-specific IIB component [EC:2.7.1.69]; InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013012: Phosphotransferase system, EIIB component, type 3 YP_008824420.1 KO: K01424: L-asparaginase [EC:3.5.1.1]; InterPro: IPR000246: Peptidase T2, asparaginase 2 YP_008824421.1 InterPro: IPR001261: ArgE/DapE/ACY1/CPG2/YscS, conserved site; IPR002933: Peptidase M20; IPR010964: Peptidase M20A, peptidase V-related; IPR011650: Peptidase M20, dimerisation YP_008824422.1 KO: K03710; InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824424.1 KO: K07027; InterPro: IPR022791: Lysylphosphatidylglycerol synthetase/UPF0104 YP_008824425.1 InterPro: IPR010718: Protein of unknown function DUF1294 YP_008824426.1 InterPro: IPR001206: Diacylglycerol kinase, catalytic domain; IPR005218: Diacylglycerol/lipid kinase; IPR017438: ATP-NAD kinase, PpnK-type, alpha/beta YP_008824427.1 KO: K01258; InterPro: IPR001261: ArgE/DapE/ACY1/CPG2/YscS, conserved site; IPR002933: Peptidase M20; IPR010161: Peptidase M20B, tripeptide aminopeptidase; IPR011650: Peptidase M20, dimerisation YP_008824428.1 InterPro: IPR002678: NGG1p interacting factor 3, NIF3; IPR017221: Uncharacterised protein family UPF0135, NIF3 YP_008824429.1 KO: K06967; InterPro: IPR006901: Protein of unknown function DUF633 YP_008824431.1 KO: K11144; InterPro: IPR002611: IstB-like ATP-binding protein; IPR009928: Primosomal DnaI, N-terminal YP_008824432.1 KO: K03346; InterPro: IPR006343: Replication protein, DnaD/DnaB domain YP_008824433.1 KO: K07738; InterPro: IPR003796: Ribonucleotide reductase regulator NrdR-like; IPR005144: ATP-cone YP_008824435.1 KO: K00859: dephospho-CoA kinase [EC:2.7.1.24]; InterPro: IPR001977: Dephospho-CoA kinase YP_008824436.1 KO: K10563: formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]; InterPro: IPR000191: DNA glycosylase/AP lyase; IPR000214: Zinc finger, DNA glycosylase/AP lyase-type; IPR010663: Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; IPR010979: Ribosomal protein S13-like, H2TH; IPR012319: DNA glycosylase/AP lyase, catalytic domain; IPR015886: DNA glycosylase/AP lyase, H2TH DNA-binding; IPR020629: Formamidopyrimidine-DNA glycosylase YP_008824437.1 KO: K02335: DNA polymerase I [EC:2.7.7.7]; InterPro: IPR001098: DNA-directed DNA polymerase, family A, palm domain; IPR002298: DNA polymerase A; IPR002421: 5'-3' exonuclease, N-terminal; IPR002562: 3'-5' exonuclease domain; IPR008918: Helix-hairpin-helix motif, class 2; IPR012337: Ribonuclease H-like domain; IPR018320: DNA polymerase 1; IPR019760: DNA-directed DNA polymerase, family A, conserved site; IPR020045: 5'-3' exonuclease, C-terminal domain; IPR020046: 5'-3' exonuclease, alpha-helical arch, N-terminal YP_008824438.1 KO: K06890; InterPro: IPR006214: Inhibitor of apoptosis-promoting Bax1-related YP_008824439.1 InterPro: IPR002539: MaoC-like dehydratase YP_008824440.1 KO: K01924: UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]; InterPro: IPR000713: Mur ligase, N-terminal; IPR004101: Mur ligase, C-terminal; IPR005758: UDP-N-acetylmuramate-alanine ligase; IPR013221: Mur ligase, central; IPR016040: NAD(P)-binding domain YP_008824441.1 InterPro: IPR003848: Domain of unknown function DUF218; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008824442.1 KO: K03095; InterPro: IPR006640: Domain of unknown function SprT-like; IPR023524: Uncharacterised protein family SprT-like YP_008824443.1 KO: K06959; InterPro: IPR003029: Ribosomal protein S1, RNA-binding domain; IPR006641: YqgF/RNase H-like domain; IPR010994: RuvA domain 2-like; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR018974: Tex-like protein, N-terminal; IPR022967: RNA-binding domain, S1; IPR023097: Tex RuvX-like domain; IPR023319: Tex-like protein, HTH domain; IPR023323: Tex-like domain YP_008824444.1 KO: K07313; InterPro: IPR004843: Metallophosphoesterase domain YP_008824445.1 KO: K07146; InterPro: IPR001763: Rhodanese-like; IPR020936: Uncharacterised protein family UPF0176; IPR022111: Protein of unknown function DUF3650 YP_008824451.1 InterPro: IPR018958: Cell wall assembly/cell proliferation coordinating protein, KNR4-like YP_008824452.1 InterPro: IPR006829: Transposase, Gram-positive bacteria YP_008824455.1 KO: K06956; InterPro: IPR001991: Sodium: dicarboxylate symporter YP_008824456.1 InterPro: IPR003708: Bacterial protein export chaperone SecB; IPR009530: Protein of unknown function DUF1149 YP_008824457.1 InterPro: IPR005834: Haloacid dehalogenase-like hydrolase; IPR006402: HAD-superfamily hydrolase, subfamily IA, variant 3; IPR006439: HAD-superfamily hydrolase, subfamily IA, variant 1; IPR023214: HAD-like domain YP_008824462.1 InterPro: IPR002187: Nitrogen regulatory protein PII; IPR011322: Nitrogen regulatory PII-like, alpha/beta YP_008824463.1 InterPro: IPR011435: Protein of unknown function DUF1538 YP_008824464.1 InterPro: IPR011435: Protein of unknown function DUF1538 YP_008824465.1 InterPro: IPR002560: Transposase, IS204/IS1001/IS1096/IS1165 YP_008824466.1 KO: K10190: lactose/L-arabinose transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824467.1 KO: K10189: lactose/L-arabinose transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824468.1 KO: K10188: lactose/L-arabinose transport system substrate-binding protein YP_008824469.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR009057: Homeodomain-like; IPR011006: CheY-like superfamily; IPR012287: Homeodomain-related; IPR018060: Helix-turn-helix, AraC type, DNA binding; IPR018062: Helix-turn-helix, AraC type, subdomain 2; IPR020449: Transcription regulator HTH, AraC- type YP_008824470.1 KO: K02478; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR010559: Signal transduction histidine kinase, internal region YP_008824471.1 KO: K01190: beta-galactosidase [EC:3.2.1.23]; InterPro: IPR004199: Beta galactosidase small chain/ domain 5; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR014718: Glycoside hydrolase-type carbohydrate-binding, subgroup YP_008824472.1 KO: K01190: beta-galactosidase [EC:3.2.1.23]; InterPro: IPR006101: Glycoside hydrolase, family 2; IPR006102: Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; IPR006103: Glycoside hydrolase, family 2, TIM barrel; IPR006104: Glycoside hydrolase, family 2, N-terminal; IPR008979: Galactose-binding domain-like; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR013812: Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain; IPR017853: Glycoside hydrolase, superfamily; IPR023232: Glycoside hydrolase, family 2, active site YP_008824473.1 KO: K07407: alpha-galactosidase [EC:3.2.1.22]; InterPro: IPR000111: Glycoside hydrolase, clan GH-D; IPR002252: Glycoside hydrolase, family 36; IPR013785: Aldolase-type TIM barrel; IPR017853: Glycoside hydrolase, superfamily YP_008824474.1 InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008824475.1 InterPro: IPR002629: Methionine synthase, vitamin-B12 independent YP_008824476.1 InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative YP_008824477.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008824478.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008824479.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR005046: Protein of unknown function DUF285, lipoprotein predicted; IPR011080: Bacterial Ig-like; IPR011889: Bacterial surface protein 26-residue repeat; IPR019931: LPXTG-motif cell wall anchor YP_008824481.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013199: Helix-turn-helix Mga, DNA-binding trans-acting positive regulator YP_008824483.1 InterPro: IPR021462: Protein of unknown function DUF3114 YP_008824486.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824487.1 KO: K03215; InterPro: IPR001566: 23S rRNA methyltransferase/RumA; IPR002792: Deoxyribonuclease/rho motif-related TRAM; IPR016027: Nucleic acid-binding, OB-fold-like YP_008824488.1 KO: K07029; InterPro: IPR001206: Diacylglycerol kinase, catalytic domain; IPR005218: Diacylglycerol/lipid kinase YP_008824489.1 KO: K02434: aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]; InterPro: IPR003789: Aspartyl/glutamyl-tRNA amidotransferase subunit B-related; IPR004413: Glutamyl-tRNA(Gln) amidotransferase, B subunit; IPR006075: Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic; IPR017958: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site; IPR017959: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E; IPR018027: Asn/Gln amidotransferase YP_008824490.1 KO: K02433: aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]; InterPro: IPR000120: Amidase; IPR004412: Glutamyl-tRNA(Gln) amidotransferase A subunit; IPR020556: Amidase, conserved site; IPR023631: Amidase signature domain YP_008824491.1 KO: K02435: aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]; InterPro: IPR003837: Glu-tRNAGln amidotransferase, C subunit YP_008824492.1 KO: K01972: DNA ligase (NAD+) [EC:6.5.1.2]; InterPro: IPR001357: BRCT; IPR001679: NAD-dependent DNA ligase; IPR004149: Zinc-finger, NAD-dependent DNA ligase C4-type; IPR004150: NAD-dependent DNA ligase, OB-fold; IPR010994: RuvA domain 2-like; IPR012340: Nucleic acid-binding, OB-fold; IPR013839: NAD-dependent DNA ligase, adenylation; IPR013840: NAD-dependent DNA ligase, N-terminal; IPR016027: Nucleic acid-binding, OB-fold-like; IPR018239: NAD-dependent DNA ligase, active site YP_008824493.1 KO: K03657: DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]; InterPro: IPR000212: DNA helicase, UvrD/REP type; IPR005751: DNA helicase, ATP-dependent, PcrA type; IPR013986: DNA helicase, DEXX box type; IPR014016: Helicase, superfamily 1, UvrD-related; IPR014017: DNA helicase, UvrD-like, C-terminal YP_008824494.1 KO: K02770: PTS system, fructose-specific IIC component; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR003352: Phosphotransferase system, EIIC; IPR003353: Phosphotransferase system, fructose-specific IIB subunit; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR004715: Phosphotransferase system, IIA component fructose subfamily; IPR006327: Phosphotransferase system, fructose IIC component; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013014: Phosphotransferase system, EIIC component, type 2; IPR016152: Phosphotransferase/anion transporter YP_008824495.1 KO: K00882: 1-phosphofructokinase [EC:2.7.1.56]; InterPro: IPR002173: Carbohydrate/puine kinase, PfkB, conserved site; IPR011611: Carbohydrate/purine kinase; IPR017583: Tagatose/fructose phosphokinase; IPR022463: 1-phosphofructokinase YP_008824496.1 KO: K03436; InterPro: IPR001034: Transcription regulator HTH, DeoR N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR014036: Transcription regulator HTH, DeoR; IPR018356: Transcription regulator, HTH DeoR-type, conserved site YP_008824499.1 KO: K03978; InterPro: IPR005225: Small GTP-binding protein domain; IPR006073: GTP binding domain; IPR019987: GTP-binding protein, ribosome biogenesis, YsxC YP_008824500.1 KO: K03544: ATP-dependent Clp protease ATP-binding subunit ClpX; InterPro: IPR003593: ATPase, AAA+ type, core; IPR004487: Clp protease, ATP-binding subunit ClpX; IPR010603: Zinc finger, ClpX C4-type; IPR013093: ATPase, AAA-2; IPR019489: Clp ATPase, C-terminal YP_008824501.1 KO: K03545; InterPro: IPR001179: Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain; IPR005215: Trigger factor; IPR008880: Trigger factor, C-terminal, bacterial; IPR008881: Trigger factor, ribosome-binding, bacterial YP_008824503.1 InterPro: IPR010432: RDD YP_008824505.1 KO: K04773; InterPro: IPR002142: Peptidase S49; IPR004635: Peptidase S49, SppA; IPR023562: Peptidase S14/S49 YP_008824507.1 KO: K00820: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]; InterPro: IPR000583: Glutamine amidotransferase, class-II; IPR001347: Sugar isomerase (SIS); IPR005855: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; IPR017932: Glutamine amidotransferase, type II YP_008824508.1 KO: K09686: antibiotic transport system permease protein; InterPro: IPR000412: ABC-2; IPR013525: ABC-2 type transporter YP_008824509.1 KO: K09687: antibiotic transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like YP_008824511.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010057: Transcription activator MutR, C-terminal; IPR010982: Lambda repressor-like, DNA-binding YP_008824512.1 KO: K03431: phosphoglucosamine mutase [EC:5.4.2.10]; InterPro: IPR005841: Alpha-D-phosphohexomutase superfamily; IPR005843: Alpha-D-phosphohexomutase, C-terminal; IPR005844: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; IPR005845: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; IPR005846: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; IPR006352: Phosphoglucosamine mutase; IPR016055: Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III; IPR016066: Alpha-D-phosphohexomutase, conserved site; IPR018247: EF-Hand 1, calcium-binding site YP_008824513.1 InterPro: IPR012505: YbbR-like YP_008824514.1 InterPro: IPR003390: DNA integrity scanning protein, DisA, N-terminal; IPR014046: Conserved hypothetical protein CHP00159 YP_008824515.1 KO: K03737: putative pyruvate-flavodoxin oxidoreductase [EC:1.2.7.-]; InterPro: IPR001450: 4Fe-4S binding domain; IPR002869: Pyruvate-flavodoxin oxidoreductase, central domain; IPR002880: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; IPR009014: Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; IPR011766: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; IPR011895: Pyruvate-flavodoxin oxidoreductase; IPR015941: Transketolase-like, C-terminal; IPR017896: 4Fe-4S ferredoxin, iron-sulpur binding domain; IPR017900: 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; IPR019456: Pyruvate-flavodoxin oxidoreductase, EKR domain; IPR019752: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YP_008824516.1 InterPro: IPR012336: Thioredoxin-like fold YP_008824520.1 InterPro: IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824523.1 KO: K09762; InterPro: IPR003802: Sporulation regulator WhiA; IPR018478: Sporulation regulator WhiA, N-terminal; IPR023054: Sporulation regulator WhiA, C-terminal YP_008824524.1 InterPro: IPR002882: LPPG: FO 2-phospho-L-lactate transferase CofD/UPF0052; IPR010119: Uncharacterised protein family UPF0052 YP_008824525.1 KO: K06958; InterPro: IPR005337: ATPase, P-loop-containing YP_008824526.1 KO: K01779: aspartate racemase [EC:5.1.1.13]; InterPro: IPR001920: Asp/Glu racemase; IPR004380: Aspartate racemase; IPR015942: Asp/Glu/hydantoin racemase; IPR018187: Asp/Glu racemase, active site YP_008824527.1 InterPro: IPR011761: ATP-grasp fold; IPR013815: ATP-grasp fold, subdomain 1; IPR013816: ATP-grasp fold, subdomain 2 YP_008824528.1 KO: K03701: excinuclease ABC subunit A; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR004602: Excinuclease ABC, A subunit; IPR013815: ATP-grasp fold, subdomain 1; IPR017871: ABC transporter, conserved site YP_008824529.1 KO: K03702: excinuclease ABC subunit B; InterPro: IPR001650: Helicase, C-terminal; IPR001943: UvrB/UvrC protein; IPR004807: UvrABC system, B subunit; IPR006935: Helicase/UvrB domain; IPR009055: UvrB, C-terminal UvrC-binding; IPR014001: DEAD-like helicase; IPR024759: UvrB, YAD/RRR-motif-containing domain YP_008824530.1 KO: K02029; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR001638: Extracellular solute-binding protein, family 3; IPR010065: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family YP_008824531.1 KO: K02028; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824532.1 KO: K01224; InterPro: IPR011683: Glycosyl hydrolase 53; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily YP_008824533.1 KO: K02788: PTS system, lactose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component; IPR013012: Phosphotransferase system, EIIB component, type 3; IPR014350: Phosphotransferase system, EIIB component, type 3, subgroup YP_008824534.1 KO: K02786: PTS system, lactose-specific IIA component [EC:2.7.1.69]; InterPro: IPR003188: Phosphotransferase system, lactose/cellobiose-specific IIA subunit YP_008824535.1 KO: K01220: 6-phospho-beta-galactosidase [EC:3.2.1.85]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR005928: 6-phospho-beta-galactosidase; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008824536.1 KO: K02530; InterPro: IPR001034: Transcription regulator HTH, DeoR N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR014036: Transcription regulator HTH, DeoR; IPR018356: Transcription regulator, HTH DeoR-type, conserved site YP_008824537.1 InterPro: IPR005833: Haloacid dehalogenase/epoxide hydrolase; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006402: HAD-superfamily hydrolase, subfamily IA, variant 3; IPR023214: HAD-like domain YP_008824538.1 KO: K03686; InterPro: IPR001305: Heat shock protein DnaJ, cysteine-rich domain; IPR001623: Heat shock protein DnaJ, N-terminal; IPR002939: Chaperone DnaJ, C-terminal; IPR003095: Heat shock protein DnaJ; IPR008971: HSP40/DnaJ peptide-binding; IPR012724: Chaperone DnaJ; IPR018253: Heat shock protein DnaJ, conserved site YP_008824539.1 KO: K04043: molecular chaperone DnaK; InterPro: IPR001023: Heat shock protein Hsp70; IPR012725: Chaperone DnaK; IPR013126: Heat shock protein 70; IPR018181: Heat shock protein 70, conserved site YP_008824540.1 KO: K03687; InterPro: IPR000740: GrpE nucleotide exchange factor; IPR009012: GrpE nucleotide exchange factor, head; IPR013805: GrpE nucleotide exchange factor, coiled-coil YP_008824541.1 KO: K03705; InterPro: IPR002571: Winged helix-turn-helix transcription repressor, HrcA; IPR005104: Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR021153: Winged helix-turn-helix transcription repressor, HrcA, C-terminal YP_008824542.1 KO: K02495: oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]; InterPro: IPR004559: Coproporphyrinogen III oxidase, oxygen-independent related; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM; IPR010723: HemN, C-terminal; IPR023404: Radical SAM, alpha/beta horseshoe YP_008824548.1 InterPro: IPR011050: Pectin lyase fold/virulence factor; IPR012334: Pectin lyase fold YP_008824549.1 KO: K03614; InterPro: IPR004338: NADH-quinone reductase NQR2/RnfD; IPR011303: Electron transport complex, RnfD YP_008824550.1 KO: K03615; InterPro: IPR001450: 4Fe-4S binding domain; IPR009051: Alpha-helical ferredoxin; IPR010208: Electron transport complex, RnfC; IPR011538: NADH: ubiquinone oxidoreductase, 51kDa subunit; IPR012285: Fumarate reductase, C-terminal; IPR017896: 4Fe-4S ferredoxin, iron-sulpur binding domain; IPR017900: 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; IPR019554: Soluble ligand binding domain YP_008824551.1 InterPro: IPR000023: Phosphofructokinase domain; IPR022953: Phosphofructokinase YP_008824553.1 InterPro: IPR009061: DNA binding domain, putative; IPR010093: Excisionase/Xis, DNA-binding YP_008824554.1 KO: K05340; InterPro: IPR010651: Sugar transport YP_008824555.1 KO: K00034: glucose 1-dehydrogenase [EC:1.1.1.47]; InterPro: IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR016040: NAD(P)-binding domain; IPR020904: Short-chain dehydrogenase/reductase, conserved site YP_008824556.1 KO: K11753: riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]; InterPro: IPR002606: Riboflavin kinase, bacterial; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR015864: FAD synthetase; IPR015865: Riboflavin kinase domain, bacterial/eukaryotic; IPR023465: Riboflavin kinase domain; IPR023468: Riboflavin kinase YP_008824557.1 KO: K03177; InterPro: IPR002501: Pseudouridine synthase II; IPR014780: tRNA pseudouridine synthase II, TruB; IPR020103: Pseudouridine synthase, catalytic domain YP_008824558.1 KO: K02834; InterPro: IPR000238: Ribosome-binding factor A; IPR015946: K homology domain-like, alpha/beta; IPR020053: Ribosome-binding factor A, conserved site; IPR023799: Ribosome-binding factor A domain YP_008824559.1 KO: K02519; InterPro: IPR000178: Translation initiation factor aIF-2, bacterial-like; IPR000795: Protein synthesis factor, GTP-binding; IPR004161: Translation elongation factor EFTu/EF1A, domain 2; IPR005225: Small GTP-binding protein domain; IPR006847: Translation initiation factor IF-2, N-terminal; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR009061: DNA binding domain, putative; IPR015760: Translation initiation factor IF- 2; IPR023115: Translation initiation factor IF- 2, domain 3 YP_008824560.1 InterPro: IPR004038: Ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_008824561.1 KO: K07742; InterPro: IPR007393: Protein of unknown function DUF448 YP_008824562.1 KO: K02600; InterPro: IPR003029: Ribosomal protein S1, RNA-binding domain; IPR004087: K Homology; IPR009019: K Homology, prokaryotic type; IPR010213: Transcription termination factor NusA; IPR012340: Nucleic acid-binding, OB-fold; IPR013735: Transcription factor NusA, N-terminal; IPR015946: K homology domain-like, alpha/beta; IPR016027: Nucleic acid-binding, OB-fold-like; IPR022967: RNA-binding domain, S1 YP_008824563.1 KO: K09748; InterPro: IPR003728: Ribosome maturation factor RimP YP_008824564.1 KO: K03763: DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]; InterPro: IPR003141: Polymerase/histidinol phosphatase, N-terminal; IPR004013: PHP, C-terminal; IPR004365: Nucleic acid binding, OB-fold, tRNA/helicase-type; IPR006054: DNA polymerase III, epsilon subunit; IPR006055: Exonuclease; IPR006308: DNA polymerase III, alpha subunit, Gram-positive type; IPR011708: Bacterial DNA polymerase III, alpha subunit; IPR012337: Ribonuclease H-like domain; IPR013520: Exonuclease, RNase T/DNA polymerase III; IPR016027: Nucleic acid-binding, OB-fold-like; IPR016195: Polymerase/histidinol phosphatase-like; IPR024754: DNA polymerase III polC-like, N-terminal domain YP_008824565.1 KO: K01881: prolyl-tRNA synthetase [EC:6.1.1.15]; InterPro: IPR002314: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; IPR002316: Prolyl-tRNA synthetase, class IIa; IPR004154: Anticodon-binding; IPR004500: Prolyl-tRNA synthetase, class IIa, bacterial-type; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR007214: YbaK/aminoacyl-tRNA synthetase-associated domain; IPR023717: Prolyl-tRNA synthetase, class IIa, type 1 YP_008824566.1 KO: K11749: regulator of sigma E protease [EC:3.4.24.-]; InterPro: IPR001478: PDZ/DHR/GLGF; IPR004387: Peptidase M50, putative membrane-associated zinc metallopeptidase; IPR008915: Peptidase M50 YP_008824567.1 KO: K00981: phosphatidate cytidylyltransferase [EC:2.7.7.41]; InterPro: IPR000374: Phosphatidate cytidylyltransferase YP_008824568.1 KO: K00806: undecaprenyl diphosphate synthase [EC:2.5.1.31]; InterPro: IPR001441: Di-trans-poly-cis-decaprenylcistransferase-like YP_008824569.1 KO: K02838; InterPro: IPR002661: Ribosome recycling factor; IPR023584: Ribosome recycling factor domain YP_008824570.1 KO: K09903: uridylate kinase [EC:2.7.4.22]; InterPro: IPR001048: Aspartate/glutamate/uridylate kinase; IPR011817: Uridylate kinase; IPR015963: Uridylate kinase, bacteria YP_008824571.1 KO: K02357; InterPro: IPR000449: Ubiquitin-associated/translation elongation factor EF1B, N-terminal; IPR001816: Translation elongation factor EFTs/EF1B; IPR009060: UBA-like; IPR014039: Translation elongation factor EFTs/EF1B, dimerisation; IPR018101: Translation elongation factor Ts, conserved site YP_008824572.1 KO: K02967: small subunit ribosomal protein S2; InterPro: IPR001865: Ribosomal protein S2; IPR005706: Ribosomal protein S2, bacteria/mitochondria/plastid; IPR018130: Ribosomal protein S2, conserved site; IPR023591: Ribosomal protein S2, flavodoxin-like domain YP_008824573.1 KO: K03402; InterPro: IPR001669: Arginine repressor; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR020899: Arginine repressor, C-terminal; IPR020900: Arginine repressor, DNA-binding domain; IPR024946: Arginine repressor C-terminal-like domain YP_008824580.1 KO: K01887: arginyl-tRNA synthetase [EC:6.1.1.19]; InterPro: IPR001278: Arginyl-tRNA synthetase, class Ia; IPR005148: Arginyl tRNA synthetase N-terminal domain; IPR008909: DALR anticodon binding; IPR009080: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR015945: Arginyl-tRNA synthetase, class Ia, core YP_008824581.1 KO: K00926: carbamate kinase [EC:2.7.2.2]; InterPro: IPR001048: Aspartate/glutamate/uridylate kinase; IPR003964: Bacterial carbamate kinase YP_008824582.1 KO: K00611: ornithine carbamoyltransferase [EC:2.1.3.3]; InterPro: IPR002292: Ornithine/putrescine carbamoyltransferase; IPR006130: Aspartate/ornithine carbamoyltransferase; IPR006131: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; IPR006132: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; IPR024904: Ornithine carbamoyltransferase YP_008824583.1 KO: K01478: arginine deiminase [EC:3.5.3.6]; InterPro: IPR003198: Amidinotransferase; IPR003876: Arginine deiminase YP_008824584.1 InterPro: IPR000595: Cyclic nucleotide-binding domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR012318: Helix-turn-helix motif, Crp-type; IPR014710: RmlC-like jelly roll fold; IPR018490: Cyclic nucleotide-binding-like YP_008824585.1 InterPro: IPR002797: Polysaccharide biosynthesis protein YP_008824586.1 InterPro: IPR002797: Polysaccharide biosynthesis protein YP_008824587.1 KO: K00012: UDPglucose 6-dehydrogenase [EC:1.1.1.22]; InterPro: IPR001732: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR013328: Dehydrogenase, multihelical; IPR014026: UDP-glucose/GDP-mannose dehydrogenase, dimerisation; IPR014027: UDP-glucose/GDP-mannose dehydrogenase, C-terminal; IPR016040: NAD(P)-binding domain; IPR017476: Nucleotide sugar dehydrogenase YP_008824588.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008824589.1 InterPro: IPR007016: O-antigen ligase-related YP_008824591.1 InterPro: IPR001296: Glycosyl transferase, family 1 YP_008824592.1 InterPro: IPR003362: Bacterial sugar transferase YP_008824593.1 InterPro: IPR000653: DegT/DnrJ/EryC1/StrS aminotransferase; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008824594.1 InterPro: IPR001451: Bacterial transferase hexapeptide repeat; IPR011004: Trimeric LpxA-like; IPR013817: Pre-ATP-grasp fold; IPR020019: Sialic acid O-acyltransferase, NeuD YP_008824595.1 InterPro: IPR003869: Polysaccharide biosynthesis protein CapD-like; IPR016040: NAD(P)-binding domain YP_008824596.1 KO: K01104; InterPro: IPR004013: PHP, C-terminal; IPR016195: Polymerase/histidinol phosphatase-like; IPR016667: Capsular polysaccharide synthesis, CpsB/CapC YP_008824597.1 KO: K00903; InterPro: IPR002586: Cobyrinic acid a,c-diamide synthase; IPR005702: Exopolysaccharide synthesis protein YP_008824598.1 InterPro: IPR003856: Lipopolysaccharide biosynthesis YP_008824600.1 KO: K07284; InterPro: IPR005754: Peptidase C60, sortase A/B; IPR023365: Peptidase C60A/B, sortase domain YP_008824602.1 KO: K01409; InterPro: IPR000905: Peptidase M22, glycoprotease; IPR017861: Peptidase M22, glycoprotease, subgroup; IPR022450: Peptidase M22, O-sialoglycoprotein peptidase YP_008824603.1 KO: K03789; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR006464: Ribosomal-protein-alanine acetyltransferase; IPR016181: Acyl-CoA N-acyltransferase YP_008824604.1 KO: K03789; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR006464: Ribosomal-protein-alanine acetyltransferase; IPR016181: Acyl-CoA N-acyltransferase YP_008824605.1 InterPro: IPR000905: Peptidase M22, glycoprotease; IPR022496: Conserved hypothetical protein CHP03725, YeaZ YP_008824606.1 KO: K02529; InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008824607.1 KO: K00965: UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]; InterPro: IPR000766: Galactose-1-phosphate uridyl transferase, class II; IPR005849: Galactose-1-phosphate uridyl transferase, N-terminal; IPR005850: Galactose-1-phosphate uridyl transferase, C-terminal; IPR023425: Galactose-1-phosphate uridyl transferase, class II, conserved site YP_008824608.1 KO: K01784: UDP-glucose 4-epimerase [EC:5.1.3.2]; InterPro: IPR001509: NAD-dependent epimerase/dehydratase; IPR005886: UDP-glucose 4-epimerase; IPR016040: NAD(P)-binding domain YP_008824609.1 InterPro: IPR021402: Protein of unknown function DUF3042 YP_008824612.1 InterPro: IPR001763: Rhodanese-like YP_008824613.1 KO: K00845: glucokinase [EC:2.7.1.2]; InterPro: IPR000600: ROK; IPR004654: Glucokinase ROK YP_008824614.1 InterPro: IPR009256: Protein of unknown function DUF910; IPR023164: YqgQ-like domain YP_008824615.1 InterPro: IPR002610: Peptidase S54, rhomboid; IPR022764: Peptidase S54, rhomboid domain YP_008824616.1 KO: K01934: 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]; InterPro: IPR002698: 5-formyltetrahydrofolate cyclo-ligase; IPR024185: 5-formyltetrahydrofolate cyclo-ligase-like domain YP_008824621.1 KO: K02015: iron complex transport system permease protein; InterPro: IPR000522: ABC transporter, permease protein YP_008824622.1 InterPro: IPR000522: ABC transporter, permease protein YP_008824623.1 KO: K02015: iron complex transport system permease protein; InterPro: IPR000522: ABC transporter, permease protein YP_008824624.1 KO: K02013: iron complex transport system ATP-binding protein [EC:3.6.3.34]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824625.1 KO: K02016: iron complex transport system substrate-binding protein; InterPro: IPR002491: ABC transporter, periplasmic binding protein YP_008824626.1 KO: K07667: two-component system, OmpR family, KDP operon response regulator KdpE; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824627.1 KO: K07646: two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR003852: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008824628.1 KO: K01548: K+-transporting ATPase ATPase C chain [EC:3.6.3.12]; InterPro: IPR003820: Potassium transporting ATPase, C subunit YP_008824629.1 KO: K01547: K+-transporting ATPase ATPase B chain [EC:3.6.3.12]; InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006391: Potassium-transporting ATPase, B chain; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008824630.1 KO: K01546: K+-transporting ATPase ATPase A chain [EC:3.6.3.12]; InterPro: IPR004623: ATPase, K+ transporting, A subunit YP_008824631.1 KO: K00287: dihydrofolate reductase [EC:1.5.1.3]; InterPro: IPR001796: Dihydrofolate reductase domain; IPR012259: Dihydrofolate reductase; IPR017925: Dihydrofolate reductase conserved site; IPR024072: Dihydrofolate reductase-like domain YP_008824632.1 KO: K02913: large subunit ribosomal protein L33; InterPro: IPR001705: Ribosomal protein L33; IPR011332: Ribosomal protein, zinc-binding domain; IPR018264: Ribosomal protein L33, conserved site YP_008824633.1 InterPro: IPR018691: Protein of unknown function DUF2188 YP_008824634.1 KO: K01953: asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]; InterPro: IPR001962: Asparagine synthase; IPR006426: Asparagine synthase, glutamine-hydrolyzing; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR017932: Glutamine amidotransferase, type II YP_008824637.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR011075: Tetracycline transcriptional regulator, TetR-related, C-terminal; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal; IPR023773: Transcription regulator HTH, TetR-type YP_008824638.1 InterPro: IPR011470: Protein of unknown function DUF1576 YP_008824640.1 InterPro: IPR015414: SNARE associated Golgi protein YP_008824641.1 InterPro: IPR018476: Glycerophosphoryl diester phosphodiesterase, membrane domain YP_008824642.1 KO: K01126: glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]; InterPro: IPR004129: Glycerophosphoryl diester phosphodiesterase; IPR017946: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain YP_008824645.1 InterPro: IPR006480: Bacteriophage phi-29, Gp14, holin YP_008824646.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008824647.1 InterPro: IPR010359: Protein of unknown function DUF955 YP_008824648.1 KO: K07504; InterPro: IPR007409: Restriction endonuclease, type I, HsdR, N-terminal; IPR017035: Uncharacterised conserved protein UCP035009, HsdR, All3000-type YP_008824649.1 KO: K03704; InterPro: IPR002059: Cold-shock protein, DNA-binding; IPR011129: Cold shock protein; IPR012156: Cold shock, CspA; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR019844: Cold-shock conserved site YP_008824651.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824652.1 KO: K03704; InterPro: IPR002059: Cold-shock protein, DNA-binding; IPR011129: Cold shock protein; IPR012156: Cold shock, CspA; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR019844: Cold-shock conserved site YP_008824654.1 KO: K01810: glucose-6-phosphate isomerase [EC:5.3.1.9]; InterPro: IPR001672: Phosphoglucose isomerase (PGI); IPR018189: Phosphoglucose isomerase, conserved site YP_008824655.1 KO: K00262: glutamate dehydrogenase (NADP+) [EC:1.4.1.4]; InterPro: IPR006095: Glutamate/phenylalanine/leucine/valine dehydrogenase; IPR006096: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; IPR006097: Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; IPR014362: Glutamate dehydrogenase; IPR016040: NAD(P)-binding domain YP_008824656.1 KO: K07007; InterPro: IPR004792: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_008824657.1 KO: K03976; InterPro: IPR004369: Prolyl-tRNA editing protein, YbaK/EbsC; IPR007214: YbaK/aminoacyl-tRNA synthetase-associated domain YP_008824658.1 KO: K03785: 3-dehydroquinate dehydratase I [EC:4.2.1.10]; InterPro: IPR001381: Dehydroquinase class I; IPR013785: Aldolase-type TIM barrel YP_008824659.1 KO: K06969; InterPro: IPR015947: PUA-like domain; IPR019614: S-adenosylmethionine-dependent methyltransferase YP_008824660.1 InterPro: IPR000917: Sulfatase; IPR012160: Membrane sulfatase, HI1246-related; IPR017849: Alkaline phosphatase-like, alpha/beta/alpha; IPR017850: Alkaline-phosphatase-like, core domain YP_008824663.1 InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008824664.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008824666.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR006379: HAD-superfamily hydrolase, subfamily IIB; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008824667.1 KO: K01571: oxaloacetate decarboxylase, alpha subunit [EC:4.1.1.3]; InterPro: IPR000891: Pyruvate carboxyltransferase; IPR003379: Carboxylase, conserved domain; IPR013785: Aldolase-type TIM barrel YP_008824668.1 KO: K05964: holo-ACP synthase [EC:2.7.7.61]; InterPro: IPR005551: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YP_008824669.1 KO: K01643: citrate lyase subunit alpha / citrate CoA-transferase [EC:4.1.3.6 2.8.3.10]; InterPro: IPR006472: Citrate lyase, alpha subunit YP_008824670.1 KO: K01644: citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]; InterPro: IPR005000: Aldehyde-lyase domain; IPR006475: Citrate lyase, beta subunit, bacteria; IPR011206: Citrate lyase, beta subunit; IPR015813: Pyruvate/Phosphoenolpyruvate kinase YP_008824671.1 KO: K01646: citrate lyase subunit gamma [EC:4.1.3.6]; InterPro: IPR006495: Citrate lyase acyl carrier protein CitD; IPR023439: Malonate decarboxylase/citrate lyase acyl carrier protein YP_008824672.1 KO: K01910: [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR004821: Cytidyltransferase-related; IPR005216: Citrate lyase ligase; IPR013166: Citrate lyase ligase, C-terminal; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR016181: Acyl-CoA N-acyltransferase YP_008824674.1 InterPro: IPR005661: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit YP_008824675.1 InterPro: IPR000089: Biotin/lipoyl attachment; IPR001882: Biotin-binding site; IPR011053: Single hybrid motif YP_008824677.1 KO: K03300; InterPro: IPR004680: Divalent ion symporter; IPR014738: Citrate transporter YP_008824678.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011711: GntR, C-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824679.1 KO: K05966: triphosphoribosyl-dephospho-CoA synthase [EC:2.7.8.25]; InterPro: IPR002736: Triphosphoribosyl-dephospho-CoA protein; IPR017551: Triphosphoribosyl-dephospho-CoA synthase, CitG YP_008824680.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824682.1 InterPro: IPR007138: Antibiotic biosynthesis monooxygenase; IPR011008: Dimeric alpha-beta barrel YP_008824683.1 KO: K00540; InterPro: IPR000415: Nitroreductase-like YP_008824684.1 InterPro: IPR000835: Transcription regulator HTH, MarR-type; IPR001845: HTH ArsR-type DNA-binding domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824686.1 KO: K07170; InterPro: IPR003018: GAF YP_008824687.1 KO: K01575: acetolactate decarboxylase [EC:4.1.1.5]; InterPro: IPR005128: Alpha-acetolactate decarboxylase YP_008824688.1 InterPro: IPR003812: Filamentation induced by cAMP/death on curing-related YP_008824690.1 InterPro: IPR001584: Integrase, catalytic core; IPR012337: Ribonuclease H-like domain YP_008824692.1 InterPro: IPR002514: Transposase IS3/IS911family YP_008824697.1 KO: K01652: acetolactate synthase I/II/III large subunit [EC:2.2.1.6]; InterPro: IPR000399: TPP-binding enzyme, conserved site; IPR011766: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; IPR012000: Thiamine pyrophosphate enzyme, central domain; IPR012001: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; IPR012782: Acetolactate synthase, catabolic YP_008824698.1 KO: K03823: phosphinothricin acetyltransferase [EC:2.3.1.183]; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824699.1 KO: K02913: large subunit ribosomal protein L33; InterPro: IPR001705: Ribosomal protein L33; IPR011332: Ribosomal protein, zinc-binding domain; IPR018264: Ribosomal protein L33, conserved site YP_008824700.1 KO: K12373: hexosaminidase [EC:3.2.1.52]; InterPro: IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR015883: Glycoside hydrolase, family 20, catalytic core; IPR017853: Glycoside hydrolase, superfamily YP_008824701.1 InterPro: IPR000994: Peptidase M24, structural domain YP_008824702.1 InterPro: IPR001034: Transcription regulator HTH, DeoR N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR014036: Transcription regulator HTH, DeoR; IPR018356: Transcription regulator, HTH DeoR-type, conserved site YP_008824703.1 KO: K05306: phosphonoacetaldehyde hydrolase [EC:3.11.1.1]; InterPro: IPR005834: Haloacid dehalogenase-like hydrolase; IPR006323: Phosphonoacetaldehyde hydrolase; IPR006439: HAD-superfamily hydrolase, subfamily IA, variant 1; IPR023214: HAD-like domain YP_008824704.1 KO: K03430: 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]; InterPro: IPR000192: Aminotransferase, class V/Cysteine desulfurase; IPR012703: 2-aminoethylphosphonate--pyruvate transaminase; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008824705.1 InterPro: IPR006059: Bacterial extracellular solute-binding, family 1; IPR006061: Bacterial extracellular solute-binding family 1, conserved site YP_008824706.1 InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824707.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824708.1 KO: K01662: 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]; InterPro: IPR005474: Transketolase, N-terminal; IPR005475: Transketolase-like, pyrimidine-binding domain; IPR005476: Transketolase, C-terminal; IPR009014: Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; IPR015941: Transketolase-like, C-terminal YP_008824709.1 InterPro: IPR010916: TonB box, conserved site YP_008824714.1 InterPro: IPR007737: M trans-acting positive regulator YP_008824715.1 InterPro: IPR002085: Alcohol dehydrogenase superfamily, zinc-type; IPR011032: GroES-like; IPR013149: Alcohol dehydrogenase, C-terminal; IPR013154: Alcohol dehydrogenase GroES-like; IPR016040: NAD(P)-binding domain; IPR020843: Polyketide synthase, enoylreductase YP_008824718.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008824721.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008824722.1 InterPro: IPR008985: Concanavalin A-like lectin/glucanase YP_008824723.1 KO: K01621: phosphoketolase [EC:4.1.2.9]; InterPro: IPR005593: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; IPR018969: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal; IPR018970: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; IPR019789: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site; IPR019790: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site YP_008824724.1 KO: K01804: L-arabinose isomerase [EC:5.3.1.4]; InterPro: IPR003762: L-arabinose isomerase; IPR004216: L-fucose/L-arabinose isomerase, C-terminal; IPR009015: L-fucose isomerase, N-terminal/central domain; IPR024664: L-arabinose isomerase, C-terminal YP_008824725.1 KO: K01786: L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]; InterPro: IPR001303: Class II aldolase/adducin N-terminal YP_008824726.1 KO: K00853: L-ribulokinase [EC:2.7.1.16]; InterPro: IPR000577: Carbohydrate kinase, FGGY; IPR018484: Carbohydrate kinase, FGGY, N-terminal; IPR018485: Carbohydrate kinase, FGGY, C-terminal YP_008824727.1 KO: K02103; InterPro: IPR000524: Transcription regulator HTH, GntR; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824728.1 InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013012: Phosphotransferase system, EIIB component, type 3 YP_008824729.1 KO: K10544: D-xylose transport system permease protein; InterPro: IPR001851: ABC transporter, permease YP_008824730.1 KO: K10545: D-xylose transport system ATP-binding protein [EC:3.6.3.17]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824731.1 KO: K10543: D-xylose transport system substrate-binding protein; InterPro: IPR001761: Periplasmic binding protein/LacI transcriptional regulator YP_008824732.1 KO: K10439: ribose transport system substrate-binding protein; InterPro: IPR001761: Periplasmic binding protein/LacI transcriptional regulator YP_008824733.1 KO: K07718: two-component system, sensor histidine kinase YesM [EC:2.7.13.3]; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR010559: Signal transduction histidine kinase, internal region YP_008824734.1 KO: K02099; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR009057: Homeodomain-like; IPR011006: CheY-like superfamily; IPR012287: Homeodomain-related; IPR018060: Helix-turn-helix, AraC type, DNA binding; IPR018062: Helix-turn-helix, AraC type, subdomain 2 YP_008824735.1 InterPro: IPR003740: Protein of unknown function DUF161 YP_008824736.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor; IPR019948: Gram-positive anchor YP_008824737.1 KO: K00359; InterPro: IPR004099: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR016156: FAD/NAD-linked reductase, dimerisation; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008824738.1 KO: K01636; InterPro: IPR001585: Transaldolase; IPR013785: Aldolase-type TIM barrel YP_008824739.1 KO: K02781: PTS system, glucitol/sorbitol-specific IIA component [EC:2.7.1.69]; InterPro: IPR004716: Phosphotransferase system, glucitol/sorbitol-specific IIA component YP_008824740.1 KO: K02782: PTS system, glucitol/sorbitol-specific IIB component [EC:2.7.1.69]; InterPro: IPR004702: Phosphotransferease, sorbitol phosphotransferase enzyme II; IPR011618: Sorbitol phosphotransferase enzyme II, N-terminal; IPR011638: Sorbitol phosphotransferase enzyme II, C-terminal YP_008824741.1 KO: K02783: PTS system, glucitol/sorbitol-specific IIC component; InterPro: IPR004699: Phosphotransferase system, enzyme II sorbitol-specific factor YP_008824742.1 InterPro: IPR009693: Glucitol operon activator YP_008824743.1 InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR007737: M trans-acting positive regulator; IPR011608: PRD; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR016152: Phosphotransferase/anion transporter YP_008824745.1 KO: K00068: sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]; InterPro: IPR002198: Short-chain dehydrogenase/reductase SDR; IPR002347: Glucose/ribitol dehydrogenase; IPR016040: NAD(P)-binding domain; IPR020904: Short-chain dehydrogenase/reductase, conserved site YP_008824746.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR013378: Listeria/Bacterioides repeat; IPR019931: LPXTG-motif cell wall anchor YP_008824747.1 KO: K07343; InterPro: IPR007077: TfoX, C-terminal YP_008824748.1 KO: K00941: hydroxymethylpyrimidine/ phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]; InterPro: IPR004399: Phosphomethylpyrimidine kinase type-2; IPR013749: Phosphomethylpyrimidine kinase type-1 YP_008824749.1 KO: K00878: hydroxyethylthiazole kinase [EC:2.7.1.50]; InterPro: IPR000417: Hydroxyethylthiazole kinase YP_008824750.1 KO: K00788: thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]; InterPro: IPR003733: Thiamine monophosphate synthase; IPR013785: Aldolase-type TIM barrel; IPR022998: Thiamin phosphate synthase superfamily YP_008824751.1 KO: K02884: large subunit ribosomal protein L19; InterPro: IPR001857: Ribosomal protein L19; IPR008991: Translation protein SH3-like; IPR018257: Ribosomal protein L19, conserved site YP_008824752.1 KO: K00554; InterPro: IPR002649: tRNA (guanine-N1-)-methyltransferase, bacteria; IPR016009: tRNA (guanine-N1-)-methyltransferase; IPR023148: tRNA (guanine-N1-)-methyltransferase, C-terminal YP_008824753.1 KO: K02860; InterPro: IPR002676: RimM protein; IPR007903: PRC-barrel; IPR009000: Translation elongation/initiation factor/Ribosomal, beta-barrel; IPR011033: PRC-barrel-like; IPR011961: 16S rRNA processing protein RimM YP_008824755.1 KO: K06960; InterPro: IPR018111: K Homology, type 1, subgroup YP_008824756.1 KO: K02959: small subunit ribosomal protein S16; InterPro: IPR000307: Ribosomal protein S16; IPR023803: Ribosomal protein S16 domain YP_008824757.1 InterPro: IPR005025: NADPH-dependent FMN reductase YP_008824758.1 InterPro: IPR002734: Bacterial bifunctional deaminase-reductase, C-terminal; IPR024072: Dihydrofolate reductase-like domain YP_008824759.1 KO: K01246: DNA-3-methyladenine glycosylase I [EC:3.2.2.20]; InterPro: IPR005019: Methyladenine glycosylase; IPR011257: DNA glycosylase YP_008824760.1 KO: K03106: signal recognition particle subunit SRP54; InterPro: IPR000897: Signal recognition particle, SRP54 subunit, GTPase; IPR003593: ATPase, AAA+ type, core; IPR004125: Signal recognition particle, SRP54 subunit, M-domain; IPR004780: Signal recognition particle, SRP; IPR013822: Signal recognition particle, SRP54 subunit, helical bundle YP_008824761.1 KO: K09787; InterPro: IPR007394: Putative helix-turn-helix protein, YlxM/p13-like; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013324: RNA polymerase sigma factor, region 3/4 YP_008824762.1 InterPro: IPR007553: Domain of unknown function DUF523 YP_008824763.1 KO: K07658: two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824764.1 KO: K07636: two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008824765.1 KO: K01552; InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR004014: ATPase, P-type cation-transporter, N-terminal; IPR005834: Haloacid dehalogenase-like hydrolase; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008824766.1 KO: K02040: phosphate transport system substrate-binding protein; InterPro: IPR011862: Phosphate binding protein; IPR024370: PBP domain YP_008824769.1 InterPro: IPR006442: Bacteriophage P1, prevent-host-death protein YP_008824771.1 InterPro: IPR000695: ATPase, P-type, H+ transporting proton pump; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006403: ATPase, P type, cation/copper-transporter; IPR006416: ATPase, P-type, heavy metal translocating; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008824772.1 KO: K01533; InterPro: IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006121: Heavy metal-associated domain, HMA; IPR006403: ATPase, P type, cation/copper-transporter; IPR006416: ATPase, P-type, heavy metal translocating; IPR008250: ATPase, P-type, ATPase-associated domain; IPR017969: Heavy-metal-associated, conserved site; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008824773.1 InterPro: IPR006121: Heavy metal-associated domain, HMA; IPR006122: Heavy metal-associated domain, copper ion-binding; IPR006403: ATPase, P type, cation/copper-transporter; IPR017969: Heavy-metal-associated, conserved site YP_008824774.1 InterPro: IPR005650: Penicillinase repressor; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR014071: Copper transport repressor CopY/TcrY YP_008824775.1 InterPro: IPR002078: RNA polymerase sigma factor 54, interaction YP_008824776.1 InterPro: IPR002293: Amino acid/polyamine transporter I; IPR004841: Amino acid permease domain YP_008824777.1 KO: K01534; InterPro: IPR001366: ATPase, P-type, cadmium-transporting; IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006121: Heavy metal-associated domain, HMA; IPR006403: ATPase, P type, cation/copper-transporter; IPR006404: ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; IPR006416: ATPase, P-type, heavy metal translocating; IPR008250: ATPase, P-type, ATPase-associated domain; IPR017969: Heavy-metal-associated, conserved site; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A YP_008824781.1 InterPro: IPR005185: Protein of unknown function DUF307 YP_008824782.1 InterPro: IPR016181: Acyl-CoA N-acyltransferase YP_008824783.1 InterPro: IPR001087: Lipase, GDSL; IPR008265: Lipase, GDSL, active site; IPR013830: Esterase, SGNH hydrolase-type; IPR013831: Esterase, SGNH hydrolase-type, subgroup YP_008824784.1 KO: K01893: asparaginyl-tRNA synthetase [EC:6.1.1.22]; InterPro: IPR002312: Aspartyl/Asparaginyl-tRNA synthetase, class IIb; IPR004364: Aminoacyl-tRNA synthetase, class II (D/K/N); IPR004365: Nucleic acid binding, OB-fold, tRNA/helicase-type; IPR004522: Asparaginyl-tRNA synthetase, class IIb; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR018150: Aminoacyl-tRNA synthetase, class II (D/K/N)-like YP_008824785.1 InterPro: IPR001176: 1-aminocyclopropane-1-carboxylate synthase; IPR004838: Aminotransferases, class-I, pyridoxal-phosphate-binding site; IPR004839: Aminotransferase, class I/classII; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008824786.1 InterPro: IPR015801: Copper amine oxidase, N2/N3-terminal YP_008824787.1 KO: K03722; InterPro: IPR006054: DNA polymerase III, epsilon subunit; IPR006055: Exonuclease; IPR006310: DnaQ exonuclease/DinG helicase; IPR006555: Helicase, ATP-dependent, c2 type; IPR006935: Helicase/UvrB domain; IPR012337: Ribonuclease H-like domain; IPR013493: Conserved hypothetical protein CHP02677; IPR013520: Exonuclease, RNase T/DNA polymerase III; IPR014013: Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type YP_008824788.1 KO: K03704; InterPro: IPR002059: Cold-shock protein, DNA-binding; IPR011129: Cold shock protein; IPR012156: Cold shock, CspA; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR019844: Cold-shock conserved site YP_008824790.1 KO: K07258: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]; InterPro: IPR001967: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; IPR012338: Beta-lactamase/transpeptidase-like; IPR012907: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; IPR015956: Penicillin-binding protein-associated; IPR018044: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A YP_008824791.1 InterPro: IPR003848: Domain of unknown function DUF218; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008824792.1 InterPro: IPR001807: Chloride channel, voltage gated; IPR014743: Chloride channel, core YP_008824793.1 InterPro: IPR010841: Fibronectin-binding YP_008824794.1 KO: K06950; InterPro: IPR003607: Metal-dependent phosphohydrolase, HD domain; IPR006674: Metal-dependent phosphohydrolase, HD subdomain; IPR023279: HD domain YP_008824795.1 KO: K03437; InterPro: IPR001537: tRNA/rRNA methyltransferase, SpoU; IPR013123: RNA 2-O ribose methyltransferase, substrate binding YP_008824796.1 KO: K01512: acylphosphatase [EC:3.6.1.7]; InterPro: IPR001792: Acylphosphatase-like; IPR017968: Acylphosphatase, conserved site; IPR020456: Acylphosphatase YP_008824797.1 KO: K03217: preprotein translocase subunit YidC; InterPro: IPR001708: Membrane insertion protein, OxaA/YidC; IPR023060: Membrane protein OxaA, firmicutes YP_008824798.1 KO: K01879: glycyl-tRNA synthetase beta chain [EC:6.1.1.14]; InterPro: IPR006194: Glycyl-tRNA synthetase, class II, heterodimeric; IPR008909: DALR anticodon binding; IPR015944: Glycyl-tRNA synthetase, class IIc, beta subunit; IPR023279: HD domain YP_008824799.1 KO: K01878: glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]; InterPro: IPR002310: Glycyl-tRNA synthetase, class IIc, alpha subunit; IPR006194: Glycyl-tRNA synthetase, class II, heterodimeric YP_008824800.1 KO: K03584: DNA repair protein RecO (recombination protein O); InterPro: IPR001164: Arf GTPase activating protein; IPR003717: Recombination protein O, RecO; IPR016027: Nucleic acid-binding, OB-fold-like; IPR022572: DNA replication/recombination mediator RecO, N-terminal YP_008824801.1 KO: K03595; InterPro: IPR004044: K Homology, type 2; IPR005225: Small GTP-binding protein domain; IPR005662: GTP-binding protein Era; IPR006073: GTP binding domain; IPR009019: K Homology, prokaryotic type; IPR015946: K homology domain-like, alpha/beta YP_008824802.1 KO: K00901: diacylglycerol kinase (ATP dependent) [EC:2.7.1.107]; InterPro: IPR000829: Diacylglycerol kinase, prokaryotic YP_008824803.1 KO: K07042; InterPro: IPR002036: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; IPR020549: Uncharacterised protein family UPF0054, conserved site; IPR023091: Metalloprotease catalytic domain, predicted YP_008824804.1 KO: K07037; InterPro: IPR003607: Metal-dependent phosphohydrolase, HD domain; IPR006674: Metal-dependent phosphohydrolase, HD subdomain; IPR006675: Uncharacterised domain HDIG; IPR011621: Metal-dependent phosphohydrolase, 7TM intracellular domain; IPR011624: Metal-dependent phosphohydrolase, 7TM extracellular domain; IPR023279: HD domain YP_008824805.1 KO: K06217; InterPro: IPR003714: PhoH-like protein; IPR004087: K Homology YP_008824806.1 KO: K09117; InterPro: IPR003789: Aspartyl/glutamyl-tRNA amidotransferase subunit B-related; IPR019004: Uncharacterised domain YOR215C, mitochondrial; IPR023168: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal YP_008824807.1 KO: K02970: small subunit ribosomal protein S21; InterPro: IPR001911: Ribosomal protein S21; IPR018278: Ribosomal protein S21, conserved site YP_008824808.1 KO: K02076; InterPro: IPR002481: Ferric-uptake regulator YP_008824809.1 KO: K09773; InterPro: IPR005177: Protein of unknown function DUF299, phosphotransferase, predicted YP_008824810.1 InterPro: IPR001845: HTH ArsR-type DNA-binding domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824811.1 KO: K01835: phosphoglucomutase [EC:5.4.2.2]; InterPro: IPR005841: Alpha-D-phosphohexomutase superfamily; IPR005843: Alpha-D-phosphohexomutase, C-terminal; IPR005844: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; IPR005845: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; IPR005846: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; IPR016055: Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III; IPR016066: Alpha-D-phosphohexomutase, conserved site YP_008824812.1 KO: K00384: thioredoxin reductase (NADPH) [EC:1.8.1.9]; InterPro: IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR005982: Thioredoxin reductase; IPR008255: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008824813.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008824814.1 KO: K01222: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001088: Glycoside hydrolase, family 4; IPR015955: Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; IPR016040: NAD(P)-binding domain; IPR019802: Glycoside hydrolase, family 4, conserved site; IPR022616: Glycosyl hydrolase, family 4, C-terminal YP_008824815.1 InterPro: IPR000281: Helix-turn-helix protein RpiR; IPR001347: Sugar isomerase (SIS); IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824816.1 KO: K02757: PTS system, beta-glucosides-specific IIC component; InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR011055: Duplicated hybrid motif; IPR011297: Phosphotransferase system, beta-glucoside-specific IIABC component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008824817.1 KO: K03488; InterPro: IPR004341: CAT RNA-binding domain; IPR011608: PRD YP_008824818.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008824819.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008824820.1 KO: K09976; InterPro: IPR005359: Uncharacterised protein family UPF0154; IPR011992: EF-hand-like domain YP_008824821.1 KO: K03322; InterPro: IPR001046: Natural resistance-associated macrophage protein YP_008824822.1 InterPro: IPR002559: Transposase, IS4-like; IPR008490: Transposase InsH, N-terminal YP_008824823.1 InterPro: IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008824824.1 InterPro: IPR005829: Sugar transporter, conserved site; IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008824825.1 InterPro: IPR001395: Aldo/keto reductase; IPR020471: Aldo/keto reductase subgroup; IPR023210: NADP-dependent oxidoreductase domain YP_008824826.1 InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative; IPR015358: Transcription regulator MerR, DNA binding YP_008824827.1 KO: K01151: deoxyribonuclease IV [EC:3.1.21.2]; InterPro: IPR001719: Endodeoxyribonuclease IV; IPR012307: Xylose isomerase, TIM barrel domain; IPR013022: Xylose isomerase-like, TIM barrel domain; IPR018246: AP endonuclease, family 2, zinc binding site YP_008824828.1 KO: K03693: penicillin-binding protein; InterPro: IPR001264: Glycosyl transferase, family 51; IPR001460: Penicillin-binding protein, transpeptidase; IPR012338: Beta-lactamase/transpeptidase-like YP_008824829.1 KO: K02529; InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR006377: Catabolite control protein A; IPR010982: Lambda repressor-like, DNA-binding YP_008824830.1 KO: K01271; InterPro: IPR000587: Creatinase; IPR000994: Peptidase M24, structural domain; IPR001714: Peptidase M24, methionine aminopeptidase YP_008824831.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824832.1 InterPro: IPR024623: Uncharacterised protein family YtxH YP_008824833.1 InterPro: IPR009293: Uncharacterised protein family UPF0478 YP_008824834.1 KO: K00963: UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]; InterPro: IPR005771: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type; IPR005835: Nucleotidyl transferase YP_008824835.1 KO: K00057: glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]; InterPro: IPR006109: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; IPR006168: Glycerol-3-phosphate dehydrogenase, NAD-dependent; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR011128: Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; IPR013328: Dehydrogenase, multihelical; IPR016040: NAD(P)-binding domain YP_008824836.1 KO: K13292; InterPro: IPR001640: Prolipoprotein diacylglyceryl transferase YP_008824837.1 KO: K06023; InterPro: IPR003755: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase; IPR011104: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; IPR011126: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal YP_008824839.1 InterPro: IPR007168: Phage shock protein, PspC, N-terminal YP_008824841.1 InterPro: IPR012507: YibE/F-like; IPR014564: Uncharacterised conserved protein UCP031503, transmembrane YP_008824842.1 InterPro: IPR012507: YibE/F-like YP_008824844.1 KO: K02039; InterPro: IPR008170: PhoU YP_008824845.1 KO: K02036: phosphate transport system ATP-binding protein [EC:3.6.3.27]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR005670: Phosphate transport system permease protein 1; IPR015850: ABC transporter, phosphate import, PstB; IPR017871: ABC transporter, conserved site YP_008824846.1 KO: K02036: phosphate transport system ATP-binding protein [EC:3.6.3.27]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR005670: Phosphate transport system permease protein 1; IPR015850: ABC transporter, phosphate import, PstB; IPR017871: ABC transporter, conserved site YP_008824847.1 KO: K02038: phosphate transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR005672: Phosphate transport system permease protein 2 YP_008824848.1 KO: K02037: phosphate transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR011864: Phosphate ABC transporter, permease protein PstC YP_008824849.1 KO: K02040: phosphate transport system substrate-binding protein; InterPro: IPR011862: Phosphate binding protein; IPR024370: PBP domain YP_008824850.1 KO: K06131: cardiolipin synthase [EC:2.7.8.-]; InterPro: IPR001736: Phospholipase D/Transphosphatidylase; IPR015679: Phospholipase D; IPR022924: Cardiolipin synthase YP_008824851.1 KO: K09811: cell division transport system permease protein; InterPro: IPR003838: Permease FtsX-like YP_008824852.1 KO: K09812: cell division transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR005286: Cell division protein FtsE, ATP-binding; IPR017871: ABC transporter, conserved site YP_008824853.1 KO: K02836; InterPro: IPR000352: Peptide chain release factor class I/class II; IPR004374: Peptide chain release factor 2; IPR005139: Peptide chain release factor; IPR020853: Peptide chain release factor 2, bacterial YP_008824854.1 KO: K03070: preprotein translocase subunit SecA; InterPro: IPR000185: SecA protein; IPR004027: SEC-C motif; IPR011115: SecA DEAD-like, N-terminal; IPR011116: SecA Wing/Scaffold; IPR011130: SecA preprotein, cross-linking domain; IPR014018: SecA motor DEAD; IPR020937: SecA conserved site YP_008824855.1 InterPro: IPR003489: Ribosomal protein S30Ae/sigma 54 modulation protein YP_008824856.1 KO: K02242; InterPro: IPR000836: Phosphoribosyltransferase YP_008824857.1 KO: K02240; InterPro: IPR001650: Helicase, C-terminal; IPR011545: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; IPR014001: DEAD-like helicase YP_008824859.1 InterPro: IPR000640: Translation elongation factor EFG/EF2, C-terminal; IPR001498: Impact, N-terminal; IPR009022: Elongation factor G/III/V; IPR015269: Uncharacterised domain UPF0029, Impact, C-terminal; IPR015796: Impact family, bacterial/archaeal; IPR020568: Ribosomal protein S5 domain 2-type fold; IPR020569: Uncharacterised protein family UPF0029, Impact, conserved site; IPR023582: Impact family YP_008824860.1 KO: K03710; InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824861.1 InterPro: IPR002731: ATPase, BadF/BadG/BcrA/BcrD type; IPR008275: CoA enzyme activase; IPR010327: 2-hydroxyglutaryl-CoA dehydratase, D-component; IPR018709: CoA enzyme activase, domain of unknown function DUF2229 YP_008824862.1 InterPro: IPR002731: ATPase, BadF/BadG/BcrA/BcrD type YP_008824863.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal; IPR023772: DNA-binding HTH domain, TetR-type, conserved site; IPR023773: Transcription regulator HTH, TetR-type YP_008824865.1 InterPro: IPR021351: Protein of unknown function DUF2969 YP_008824866.1 InterPro: IPR000600: ROK YP_008824867.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824868.1 KO: K08998; InterPro: IPR002696: Protein of unknown function DUF37 YP_008824869.1 InterPro: IPR024596: DNA-directed RNA polymerase subunit beta/EpuA YP_008824870.1 KO: K00790: UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]; InterPro: IPR001986: Enolpyruvate transferase domain; IPR005750: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; IPR013792: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta YP_008824871.1 InterPro: IPR009526: Protein of unknown function DUF1146, integral membrane YwzB YP_008824872.1 KO: K02114: F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]; InterPro: IPR001469: ATPase, F1 complex, delta/epsilon subunit; IPR020546: ATPase, F1 complex, delta/epsilon subunit, N-terminal; IPR020547: ATPase, F1 complex, delta/epsilon subunit, C-terminal YP_008824873.1 KO: K02112: F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]; InterPro: IPR000194: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; IPR000793: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; IPR003593: ATPase, AAA+ type, core; IPR004100: ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; IPR005722: ATPase, F1 complex, beta subunit; IPR018118: ATPase, F1/A1 complex, alpha/beta subunit, N-terminal; IPR020003: ATPase, alpha/beta subunit, nucleotide-binding domain, active site; IPR024034: ATPase, F1 complex beta subunit/V1 complex, C-terminal YP_008824874.1 KO: K02115: F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]; InterPro: IPR000131: ATPase, F1 complex, gamma subunit; IPR023632: ATPase, F1 complex, gamma subunit conserved site; IPR023633: ATPase, F1 complex, gamma subunit domain YP_008824875.1 KO: K02111: F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]; InterPro: IPR000194: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; IPR000793: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; IPR004100: ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; IPR005294: ATPase, F1 complex, alpha subunit; IPR018118: ATPase, F1/A1 complex, alpha/beta subunit, N-terminal; IPR020003: ATPase, alpha/beta subunit, nucleotide-binding domain, active site; IPR023366: ATPase, F1/A1 complex, alpha subunit, N-terminal YP_008824876.1 KO: K02113: F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]; InterPro: IPR000711: ATPase, F1 complex, OSCP/delta subunit YP_008824877.1 KO: K02109: F-type H+-transporting ATPase subunit b [EC:3.6.3.14]; InterPro: IPR002146: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; IPR005864: ATPase, F0 complex, subunit B, bacterial YP_008824878.1 KO: K02110: F-type H+-transporting ATPase subunit c [EC:3.6.3.14]; InterPro: IPR000454: ATPase, F0 complex, subunit C; IPR002379: ATPase, F0/V0 complex, subunit C; IPR005953: ATPase, F0 complex, subunit C, bacterial/chloroplast; IPR020537: ATPase, F0 complex, subunit C, DCCD-binding site YP_008824879.1 KO: K02108: F-type H+-transporting ATPase subunit a [EC:3.6.3.14]; InterPro: IPR000568: ATPase, F0 complex, subunit A; IPR023011: ATPase, F0 complex, subunit A, active site YP_008824880.1 KO: K03664; InterPro: IPR000037: SsrA-binding protein; IPR020081: SsrA-binding protein, conserved site; IPR023620: Small protein B YP_008824881.1 KO: K12573: ribonuclease R [EC:3.1.-.-]; InterPro: IPR001900: Ribonuclease II/R; IPR003029: Ribosomal protein S1, RNA-binding domain; IPR004476: Ribonuclease II/ribonuclease R; IPR011805: Ribonuclease R; IPR012340: Nucleic acid-binding, OB-fold; IPR013223: Ribonuclease B, N-terminal OB domain; IPR016027: Nucleic acid-binding, OB-fold-like; IPR022966: Ribonuclease II/R, conserved site; IPR022967: RNA-binding domain, S1 YP_008824882.1 KO: K03928; InterPro: IPR012354: Esterase/lipase YP_008824883.1 KO: K03075: preprotein translocase subunit SecG; InterPro: IPR004692: Preprotein translocase SecG subunit YP_008824884.1 KO: K06975; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824886.1 KO: K01239: purine nucleosidase [EC:3.2.2.1]; InterPro: IPR001910: Inosine/uridine-preferring nucleoside hydrolase domain; IPR023186: Inosine/uridine-preferring nucleoside hydrolase YP_008824887.1 InterPro: IPR024529: ECF transporter, substrate-specific component YP_008824888.1 KO: K00680: [EC:2.3.1.-]; InterPro: IPR001451: Bacterial transferase hexapeptide repeat; IPR011004: Trimeric LpxA-like; IPR018357: Hexapeptide transferase, conserved site; IPR024688: Maltose/galactoside acetyltransferase YP_008824891.1 InterPro: IPR000675: Cutinase YP_008824897.1 InterPro: IPR007737: M trans-acting positive regulator YP_008824899.1 KO: K01689: enolase [EC:4.2.1.11]; InterPro: IPR000941: Enolase; IPR020809: Enolase, conserved site; IPR020810: Enolase, C-terminal; IPR020811: Enolase, N-terminal YP_008824900.1 KO: K01803: triosephosphate isomerase (TIM) [EC:5.3.1.1]; InterPro: IPR000652: Triosephosphate isomerase; IPR013785: Aldolase-type TIM barrel; IPR020861: Triosephosphate isomerase, active site YP_008824901.1 KO: K00927: phosphoglycerate kinase [EC:2.7.2.3]; InterPro: IPR001576: Phosphoglycerate kinase; IPR015824: Phosphoglycerate kinase, N-terminal; IPR015901: Phosphoglycerate kinase, C-terminal; IPR015911: Phosphoglycerate kinase, conserved site YP_008824902.1 KO: K00134: glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]; InterPro: IPR006424: Glyceraldehyde-3-phosphate dehydrogenase, type I; IPR016040: NAD(P)-binding domain; IPR020828: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; IPR020829: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; IPR020830: Glyceraldehyde 3-phosphate dehydrogenase, active site; IPR020831: Glyceraldehyde/Erythrose phosphate dehydrogenase family YP_008824903.1 KO: K05311; InterPro: IPR007324: Sugar-binding domain, putative; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824904.1 KO: K03092: RNA polymerase sigma-54 factor; InterPro: IPR000394: RNA polymerase sigma factor 54; IPR007046: RNA polymerase sigma factor 54, core-binding; IPR007634: RNA polymerase sigma factor 54, DNA-binding YP_008824907.1 KO: K03048: DNA-directed RNA polymerase subunit delta; InterPro: IPR007759: DNA-directed RNA polymerase delta subunit YP_008824908.1 InterPro: IPR011038: Calycin-like; IPR015231: Protein of unknown function DUF1934 YP_008824909.1 InterPro: IPR004143: Biotin/lipoate A/B protein ligase; IPR024897: Octanoyltransferase LipL YP_008824910.1 KO: K06885; InterPro: IPR003607: Metal-dependent phosphohydrolase, HD domain; IPR006674: Metal-dependent phosphohydrolase, HD subdomain; IPR023279: HD domain YP_008824911.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR006379: HAD-superfamily hydrolase, subfamily IIB; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008824912.1 KO: K03574; InterPro: IPR000086: NUDIX hydrolase domain; IPR015797: NUDIX hydrolase domain-like; IPR020084: NUDIX hydrolase, conserved site YP_008824913.1 KO: K01759: lactoylglutathione lyase [EC:4.4.1.5]; InterPro: IPR004360: Glyoxalase/fosfomycin resistance/dioxygenase; IPR018146: Glyoxalase I, conserved site YP_008824914.1 KO: K03498; InterPro: IPR003445: Cation transporter; IPR004772: Potassium uptake protein TrkH YP_008824915.1 KO: K02120: V-type H+-transporting ATPase subunit D [EC:3.6.3.14]; InterPro: IPR002699: ATPase, V1/A1 complex, subunit D YP_008824916.1 KO: K02118: V-type H+-transporting ATPase subunit B [EC:3.6.3.14]; InterPro: IPR000194: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; IPR000793: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; IPR004100: ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; IPR020003: ATPase, alpha/beta subunit, nucleotide-binding domain, active site; IPR022879: V-type ATP synthase regulatory subunit B/beta YP_008824917.1 KO: K02117: V-type H+-transporting ATPase subunit A [EC:3.6.3.14]; InterPro: IPR000194: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; IPR000793: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; IPR004100: ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; IPR018118: ATPase, F1/A1 complex, alpha/beta subunit, N-terminal; IPR020003: ATPase, alpha/beta subunit, nucleotide-binding domain, active site; IPR022878: V-type ATP synthase catalytic subunit A/alpha; IPR024034: ATPase, F1 complex beta subunit/V1 complex, C-terminal YP_008824918.1 KO: K02122: V-type H+-transporting ATPase subunit F [EC:3.6.3.14]; InterPro: IPR008218: ATPase, V1/A1 complex, subunit F; IPR022944: ATPase, V1 complex, subunit F, bacterial/archaeal YP_008824919.1 KO: K02119: V-type H+-transporting ATPase subunit C [EC:3.6.3.14]; InterPro: IPR002843: ATPase, V0/A0 complex, subunit C/D YP_008824920.1 KO: K02121: V-type H+-transporting ATPase subunit E [EC:3.6.3.14]; InterPro: IPR002842: ATPase, V1/A1 complex, subunit E YP_008824921.1 KO: K02124: V-type H+-transporting ATPase subunit K [EC:3.6.3.14]; InterPro: IPR000245: ATPase, V0 complex, proteolipid subunit C; IPR002379: ATPase, F0/V0 complex, subunit C YP_008824922.1 KO: K02123: V-type H+-transporting ATPase subunit I [EC:3.6.3.14]; InterPro: IPR002490: ATPase, V0/A0 complex, 116kDa subunit YP_008824924.1 KO: K07010; InterPro: IPR011697: Peptidase C26; IPR017926: Glutamine amidotransferase type 1 YP_008824925.1 KO: K04041: fructose-1,6-bisphosphatase III [EC:3.1.3.11]; InterPro: IPR009164: Fructose-1,6-bisphosphatase, Bacillus type YP_008824926.1 KO: K01992 YP_008824927.1 KO: K01990; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824928.1 KO: K03703: excinuclease ABC subunit C; InterPro: IPR000305: Excinuclease ABC, C subunit, N-terminal; IPR001162: Excinuclease ABC, C subunit, C-terminal; IPR001943: UvrB/UvrC protein; IPR004791: Excinuclease ABC, C subunit; IPR009055: UvrB, C-terminal UvrC-binding; IPR010994: RuvA domain 2-like YP_008824929.1 KO: K03671; InterPro: IPR005746: Thioredoxin; IPR012336: Thioredoxin-like fold; IPR013766: Thioredoxin domain; IPR017937: Thioredoxin, conserved site YP_008824930.1 KO: K07456: DNA mismatch repair protein MutS2; InterPro: IPR000432: DNA mismatch repair protein MutS, C-terminal; IPR002625: Smr protein/MutS2 C-terminal; IPR005747: DNA mismatch repair protein MutS, type 2; IPR007696: DNA mismatch repair protein MutS, core YP_008824931.1 InterPro: IPR003825: Colicin V production, CvpA YP_008824932.1 KO: K09888; InterPro: IPR007838: Cell division protein ZapA-like YP_008824933.1 KO: K03471: ribonuclease HIII [EC:3.1.26.4]; InterPro: IPR001352: Ribonuclease HII/HIII; IPR004641: Ribonuclease HIII; IPR012337: Ribonuclease H-like domain; IPR024567: Ribonuclease HII/HIII domain; IPR024568: Ribonuclease HIII, N-terminal YP_008824934.1 KO: K01448; InterPro: IPR002508: Cell wall hydrolase/autolysin, catalytic YP_008824935.1 InterPro: IPR001223: Glycoside hydrolase, family 18, catalytic domain; IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR011583: Chitinase II; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR013783: Immunoglobulin-like fold; IPR017853: Glycoside hydrolase, superfamily YP_008824936.1 InterPro: IPR001223: Glycoside hydrolase, family 18, catalytic domain; IPR003610: Carbohydrate-binding module family 5/12; IPR003961: Fibronectin, type III; IPR011583: Chitinase II; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR013783: Immunoglobulin-like fold; IPR017853: Glycoside hydrolase, superfamily YP_008824937.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal; IPR023772: DNA-binding HTH domain, TetR-type, conserved site; IPR023773: Transcription regulator HTH, TetR-type YP_008824938.1 KO: K02003; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824939.1 KO: K02004; InterPro: IPR003838: Permease FtsX-like YP_008824940.1 KO: K03082: hexulose-6-phosphate isomerase [EC:5.-.-.-]; InterPro: IPR004560: Putative hexulose-6-phosphate isomerase; IPR012307: Xylose isomerase, TIM barrel domain; IPR013022: Xylose isomerase-like, TIM barrel domain YP_008824941.1 KO: K03081: 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]; InterPro: IPR001754: Orotidine 5'-phosphate decarboxylase domain; IPR011060: Ribulose-phosphate binding barrel; IPR013785: Aldolase-type TIM barrel YP_008824942.1 KO: K02822: PTS system, ascorbate-specific IIB component [EC:2.7.1.69]; InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2 YP_008824943.1 KO: K03475: PTS system, ascorbate-specific IIC component; InterPro: IPR004703: Phosphotransferase system, sugar-specific permease component YP_008824944.1 KO: K02821: PTS system, ascorbate-specific IIA component [EC:2.7.1.69]; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR016152: Phosphotransferase/anion transporter YP_008824945.1 KO: K03476: L-ascorbate 6-phosphate lactonase [EC:3.1.1.-] YP_008824946.1 InterPro: IPR001034: Transcription regulator HTH, DeoR N-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR014036: Transcription regulator HTH, DeoR; IPR018356: Transcription regulator, HTH DeoR-type, conserved site YP_008824948.1 KO: K10530; InterPro: IPR000262: FMN-dependent dehydrogenase; IPR008259: FMN-dependent alpha-hydroxy acid dehydrogenase, active site; IPR012133: Alpha-hydroxy acid dehydrogenase, FMN-dependent; IPR013785: Aldolase-type TIM barrel YP_008824949.1 KO: K06998; InterPro: IPR003719: Phenazine biosynthesis PhzC/PhzF protein YP_008824950.1 InterPro: IPR003719: Phenazine biosynthesis PhzC/PhzF protein YP_008824951.1 KO: K01750: ornithine cyclodeaminase [EC:4.3.1.12]; InterPro: IPR003462: Ornithine cyclodeaminase/mu-crystallin; IPR016040: NAD(P)-binding domain YP_008824952.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR004839: Aminotransferase, class I/classII; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008824953.1 KO: K00027: malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]; InterPro: IPR001891: Malic oxidoreductase; IPR012301: Malic enzyme, N-terminal; IPR012302: Malic enzyme, NAD-binding; IPR015884: Malic enzyme, conserved site; IPR016040: NAD(P)-binding domain YP_008824954.1 InterPro: IPR004679: 2-hydroxycarboxylate transporter YP_008824955.1 InterPro: IPR002559: Transposase, IS4-like YP_008824956.1 InterPro: IPR008490: Transposase InsH, N-terminal YP_008824957.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824958.1 InterPro: IPR009711: Uncharacterised protein family UPF0473 YP_008824959.1 KO: K07447; InterPro: IPR005227: Resolvase, holliday junction-type, YqgF-like; IPR006641: YqgF/RNase H-like domain; IPR012337: Ribonuclease H-like domain YP_008824960.1 InterPro: IPR009309: Uncharacterised protein family UPF0297 YP_008824961.1 KO: K15051 YP_008824963.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR012287: Homeodomain-related YP_008824964.1 InterPro: IPR010619: Domain of unknown function DUF1212 YP_008824965.1 InterPro: IPR024528: Domain of unknown function DUF3815 YP_008824966.1 KO: K08986; InterPro: IPR015402: Protein of unknown function DUF1980 YP_008824967.1 KO: K07089; InterPro: IPR005524: Protein of unknown function DUF318, transmembrane YP_008824968.1 InterPro: IPR012336: Thioredoxin-like fold; IPR013766: Thioredoxin domain YP_008824969.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824970.1 KO: K01926; InterPro: IPR003781: CoA-binding; IPR009718: Rex DNA-binding, C-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016040: NAD(P)-binding domain; IPR022876: Transcriptional repressor, redox-sensing, Rex YP_008824971.1 KO: K06158; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824972.1 KO: K03534; InterPro: IPR008000: Rhamnose mutarotase; IPR011008: Dimeric alpha-beta barrel; IPR013448: L-rhamnose 1-epimerase YP_008824974.1 InterPro: IPR000412: ABC-2 YP_008824976.1 KO: K09687: antibiotic transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008824977.1 KO: K07778: two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR011712: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain YP_008824978.1 KO: K07696: two-component system, NarL family, response regulator NreC; InterPro: IPR000792: Transcription regulator LuxR, C-terminal; IPR001789: Signal transduction response regulator, receiver domain; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008824979.1 InterPro: IPR019931: LPXTG-motif cell wall anchor YP_008824981.1 InterPro: IPR011493: GLUG YP_008824983.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008824984.1 InterPro: IPR009241: Addiction module killer protein YP_008824985.1 KO: K11069: spermidine/putrescine transport system substrate-binding protein; InterPro: IPR001188: Bacterial periplasmic spermidine/putrescine-binding protein; IPR006059: Bacterial extracellular solute-binding, family 1 YP_008824986.1 KO: K11070: spermidine/putrescine transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824987.1 KO: K11071: spermidine/putrescine transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008824988.1 KO: K11072: spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR005893: Spermidine/putrescine ABC transporter ATP-binding subunit; IPR008995: Molybdate/tungstate binding; IPR013611: Transport-associated OB, type 2; IPR017871: ABC transporter, conserved site; IPR017879: ABC transporter, spermidine/putrescine import ATP-binding protein, PotA YP_008824989.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding; IPR011051: Cupin, RmlC-type; IPR013096: Cupin 2, conserved barrel; IPR014710: RmlC-like jelly roll fold YP_008824990.1 InterPro: IPR002085: Alcohol dehydrogenase superfamily, zinc-type; IPR011032: GroES-like; IPR013149: Alcohol dehydrogenase, C-terminal; IPR014188: Quinone oxidoreductase putative, YhdH/YhfP; IPR016040: NAD(P)-binding domain; IPR020843: Polyketide synthase, enoylreductase YP_008824991.1 KO: K01922: phosphopantothenate-cysteine ligase [EC:6.3.2.5]; InterPro: IPR007085: DNA/pantothenate metabolism flavoprotein, C-terminal; IPR011848: Phosphopantothenate--cysteine ligase YP_008824992.1 KO: K13038: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]; InterPro: IPR003382: Flavoprotein; IPR011847: Phosphopantothenoylcysteine decarboxylase YP_008824993.1 InterPro: IPR024529: ECF transporter, substrate-specific component YP_008824994.1 InterPro: IPR001509: NAD-dependent epimerase/dehydratase; IPR016040: NAD(P)-binding domain YP_008824995.1 InterPro: IPR002085: Alcohol dehydrogenase superfamily, zinc-type; IPR011032: GroES-like; IPR013149: Alcohol dehydrogenase, C-terminal; IPR013154: Alcohol dehydrogenase GroES-like; IPR014189: Quinone oxidoreductase putative, PIG3; IPR016040: NAD(P)-binding domain; IPR020843: Polyketide synthase, enoylreductase YP_008824996.1 KO: K00244: fumarate reductase flavoprotein subunit [EC:1.3.99.1]; InterPro: IPR003953: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; IPR010960: Flavocytochrome c; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_008824998.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008824999.1 KO: K00075: UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158]; InterPro: IPR003170: UDP-N-acetylenolpyruvoylglucosamine reductase; IPR006094: FAD linked oxidase, N-terminal; IPR011601: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; IPR016166: FAD-binding, type 2; IPR016167: FAD-binding, type 2, subdomain 1; IPR016169: CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 YP_008825000.1 KO: K03810; InterPro: IPR000683: Oxidoreductase, N-terminal; IPR016040: NAD(P)-binding domain YP_008825001.1 KO: K01142: exodeoxyribonuclease III [EC:3.1.11.2]; InterPro: IPR000097: AP endonuclease, family 1; IPR004808: Exodeoxyribonuclease III xth; IPR005135: Endonuclease/exonuclease/phosphatase; IPR020847: AP endonuclease, family 1, binding site; IPR020848: AP endonuclease, family 1, conserved site YP_008825002.1 KO: K02342: DNA polymerase III subunit epsilon [EC:2.7.7.7]; InterPro: IPR006054: DNA polymerase III, epsilon subunit; IPR006055: Exonuclease; IPR012337: Ribonuclease H-like domain; IPR013520: Exonuclease, RNase T/DNA polymerase III YP_008825003.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008825004.1 KO: K06925; InterPro: IPR003442: Uncharacterised domain UPF0079, ATPase bacteria YP_008825005.1 KO: K00625: phosphate acetyltransferase [EC:2.3.1.8]; InterPro: IPR002505: Phosphate acetyl/butaryl transferase; IPR004614: Phosphate acetyltransferase; IPR012147: Phosphate acetyl/butyryltransferase YP_008825006.1 KO: K03648: uracil-DNA glycosylase [EC:3.2.2.27]; InterPro: IPR002043: Uracil-DNA glycosylase; IPR005122: Uracil-DNA glycosylase-like; IPR018085: Uracil-DNA glycosylase, active site YP_008825007.1 KO: K07024; InterPro: IPR000150: Cof protein; IPR006379: HAD-superfamily hydrolase, subfamily IIB; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008825008.1 InterPro: IPR000007: Tubby, C-terminal YP_008825010.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008825011.1 InterPro: IPR013083: Zinc finger, RING/FYVE/PHD-type YP_008825013.1 KO: K08234; InterPro: IPR018146: Glyoxalase I, conserved site YP_008825014.1 KO: K03811; InterPro: IPR006419: Nicotinamide mononucleotide transporter PnuC YP_008825016.1 KO: K01304; InterPro: IPR000816: Peptidase C15, pyroglutamyl peptidase I; IPR016125: Peptidase C15, pyroglutamyl peptidase I-like YP_008825017.1 InterPro: IPR009323: Protein of unknown function DUF979 YP_008825018.1 InterPro: IPR010374: Protein of unknown function DUF969 YP_008825019.1 InterPro: IPR008875: TraX YP_008825020.1 KO: K03758; InterPro: IPR002293: Amino acid/polyamine transporter I; IPR004754: Amino acid antiporter; IPR004841: Amino acid permease domain YP_008825021.1 KO: K03647; InterPro: IPR004465: Ribonucleotide reductase Class Ib, NrdI; IPR008254: Flavodoxin/nitric oxide synthase YP_008825022.1 KO: K02809: PTS system, sucrose-specific IIB component [EC:2.7.1.69]; InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR011055: Duplicated hybrid motif; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008825023.1 KO: K07106: N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]; InterPro: IPR001347: Sugar isomerase (SIS); IPR005486: Glucokinase regulatory, conserved site; IPR005488: N-acetylmuramic acid 6-phosphate etherase YP_008825024.1 KO: K09963; InterPro: IPR002130: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain; IPR008589: Protein of unknown function DUF871, prokaryotic; IPR013785: Aldolase-type TIM barrel; IPR017853: Glycoside hydrolase, superfamily YP_008825027.1 InterPro: IPR002921: Lipase, class 3 YP_008825032.1 KO: K15634: probable phosphoglycerate mutase [EC:5.4.2.1]; InterPro: IPR001345: Phosphoglycerate/bisphosphoglycerate mutase, active site; IPR013078: Histidine phosphatase superfamily, clade-1 YP_008825033.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825034.1 KO: K00865: glycerate kinase [EC:2.7.1.31]; InterPro: IPR004381: Glycerate kinase; IPR018193: Glycerate kinase, flavodoxin-like domain YP_008825037.1 KO: K03293; InterPro: IPR002293: Amino acid/polyamine transporter I; IPR004841: Amino acid permease domain YP_008825038.1 KO: K03315: Na+:H+ antiporter, NhaC family; InterPro: IPR004770: Na+/H+ antiporter NhaC; IPR018461: Na+/H+ antiporter NhaC-like YP_008825039.1 KO: K12941; InterPro: IPR011650: Peptidase M20, dimerisation; IPR017144: Peptidase M20D, amidohydrolase, predicted; IPR017439: Amidohydrolase YP_008825040.1 KO: K02073: D-methionine transport system substrate-binding protein; InterPro: IPR004478: Lipoprotein YaeC; IPR004872: NLPA lipoprotein YP_008825041.1 KO: K02072: D-methionine transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825042.1 KO: K02071: D-methionine transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site; IPR017908: ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal; IPR018449: NIL domain YP_008825043.1 InterPro: IPR005834: Haloacid dehalogenase-like hydrolase; IPR006402: HAD-superfamily hydrolase, subfamily IA, variant 3; IPR023214: HAD-like domain YP_008825044.1 InterPro: IPR007737: M trans-acting positive regulator YP_008825046.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR019931: LPXTG-motif cell wall anchor; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008825050.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor; IPR019948: Gram-positive anchor YP_008825052.1 KO: K01531; InterPro: IPR001757: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IPR004014: ATPase, P-type cation-transporter, N-terminal; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006068: ATPase, P-type cation-transporter, C-terminal; IPR006415: ATPase, P-type, magnesium-translocating; IPR008250: ATPase, P-type, ATPase-associated domain; IPR018303: ATPase, P-type phosphorylation site; IPR023214: HAD-like domain; IPR023298: ATPase, P-type, transmembrane domain; IPR023299: ATPase, P-type, cytoplasmic domain N; IPR023300: ATPase, P-type, cytoplasmic transduction domain A; IPR023306: ATPase, cation-transporting, domain N YP_008825054.1 KO: K00940: nucleoside-diphosphate kinase [EC:2.7.4.6]; InterPro: IPR001564: Nucleoside diphosphate kinase YP_008825055.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008825056.1 InterPro: IPR000917: Sulfatase; IPR012160: Membrane sulfatase, HI1246-related; IPR017849: Alkaline phosphatase-like, alpha/beta/alpha; IPR017850: Alkaline-phosphatase-like, core domain YP_008825058.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008825061.1 InterPro: IPR002624: Deoxynucleoside kinase YP_008825062.1 KO: K08728: nucleoside deoxyribosyltransferase [EC:2.4.2.6]; InterPro: IPR007710: Nucleoside 2-deoxyribosyltransferase YP_008825063.1 KO: K06966; InterPro: IPR005269: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_008825064.1 KO: K00874: 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]; InterPro: IPR011611: Carbohydrate/purine kinase YP_008825065.1 InterPro: IPR010763: Protein of unknown function DUF1341 YP_008825066.1 KO: K01042: L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]; InterPro: IPR006337: Pyridoxal phosphate-dependent enzyme, SelA-like; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015424: Pyridoxal phosphate-dependent transferase, major domain; IPR018319: Pyridoxal phosphate-dependent transferase YP_008825067.1 KO: K01465: dihydroorotase [EC:3.5.2.3]; InterPro: IPR006680: Amidohydrolase 1; IPR011059: Metal-dependent hydrolase, composite domain; IPR020043: Amidohydrolase EF0837/AHA3915, putative YP_008825068.1 KO: K09963; InterPro: IPR002130: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain; IPR008589: Protein of unknown function DUF871, prokaryotic; IPR013785: Aldolase-type TIM barrel; IPR017853: Glycoside hydrolase, superfamily YP_008825069.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008825070.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825071.1 KO: K01223: 6-phospho-beta-glucosidase [EC:3.2.1.86]; InterPro: IPR001360: Glycoside hydrolase, family 1; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018120: Glycoside hydrolase, family 1, active site YP_008825072.1 KO: K02755: PTS system, beta-glucosides-specific IIA component [EC:2.7.1.69]; InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR011055: Duplicated hybrid motif; IPR011297: Phosphotransferase system, beta-glucoside-specific IIABC component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008825073.1 KO: K03488; InterPro: IPR004341: CAT RNA-binding domain; IPR011608: PRD YP_008825074.1 KO: K07284; InterPro: IPR005754: Peptidase C60, sortase A/B; IPR023365: Peptidase C60A/B, sortase domain YP_008825075.1 InterPro: IPR011394: NTP Pyrophosphohydrolase MazG-related, RS21-C6 YP_008825076.1 InterPro: IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008825077.1 KO: K01788: N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]; InterPro: IPR007260: Putative N-acetylmannosamine-6-phosphate epimerase; IPR011060: Ribulose-phosphate binding barrel; IPR013785: Aldolase-type TIM barrel YP_008825078.1 KO: K07053; InterPro: IPR003141: Polymerase/histidinol phosphatase, N-terminal; IPR004013: PHP, C-terminal; IPR016195: Polymerase/histidinol phosphatase-like YP_008825079.1 KO: K02042: phosphonate transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825080.1 KO: K02042: phosphonate transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825081.1 KO: K02041: phosphonate transport system ATP-binding protein [EC:3.6.3.28]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR012693: ABC transporter, phosphonate import, PhnC; IPR017871: ABC transporter, conserved site YP_008825082.1 KO: K02044: phosphonate transport system substrate-binding protein; InterPro: IPR005770: Phosphonate-binding periplasmic protein YP_008825083.1 KO: K07029; InterPro: IPR001206: Diacylglycerol kinase, catalytic domain; IPR005218: Diacylglycerol/lipid kinase YP_008825084.1 KO: K04030; InterPro: IPR010424: Ethanolamine utilisation EutQ; IPR011051: Cupin, RmlC-type; IPR014710: RmlC-like jelly roll fold YP_008825085.1 KO: K04023; InterPro: IPR007441: Ethanolamine utilisation protein, EutH YP_008825086.1 InterPro: IPR004992: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; IPR023414: Ethanolamine utilization protein-like domain YP_008825088.1 InterPro: IPR008300: Propanediol utilisation protein YP_008825090.1 KO: K04027; InterPro: IPR000249: Microcompartment protein, bacteria; IPR020808: Bacterial microcompartments protein, conserved site YP_008825091.1 InterPro: IPR013357: Acetaldehyde dehydrogenase, acetylating; IPR015590: Aldehyde dehydrogenase domain; IPR016161: Aldehyde/histidinol dehydrogenase; IPR016162: Aldehyde dehydrogenase, N-terminal; IPR016163: Aldehyde dehydrogenase, C-terminal YP_008825092.1 InterPro: IPR000249: Microcompartment protein, bacteria YP_008825093.1 KO: K04026; InterPro: IPR000249: Microcompartment protein, bacteria; IPR009193: Polyhedral organelle shell protein, EutL/PduB type YP_008825094.1 KO: K03736: ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]; InterPro: IPR009246: Ethanolamine ammonia-lyase light chain YP_008825095.1 KO: K03735: ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]; InterPro: IPR010628: Ethanolamine ammonia lyase large subunit; IPR013785: Aldolase-type TIM barrel YP_008825096.1 KO: K04019: ethanolamine utilization protein EutA; InterPro: IPR009377: Ethanolamine utilisation EutA YP_008825097.1 InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR005467: Signal transduction histidine kinase, core; IPR011102: Signal transduction histidine kinase, HWE region; IPR011495: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; IPR022066: Signal transduction histidine kinase YP_008825098.1 KO: K07183; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR005561: ANTAR domain; IPR008327: Signal transduction response regulator, antiterminator; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825099.1 KO: K04031; InterPro: IPR000249: Microcompartment protein, bacteria; IPR009307: Ethanolamine utilisation EutS YP_008825100.1 InterPro: IPR001670: Alcohol dehydrogenase, iron-type; IPR018211: Alcohol dehydrogenase, iron-type, conserved site YP_008825101.1 InterPro: IPR002779: Adenosylcobalamin biosynthesis, ATP: cob(I)alamin adenosyltransferase, EutT/PduO type; IPR016030: Adenosylcobalamin biosynthesis, ATP: cob(I)alamin adenosyltransferase-like; IPR017858: Adenosylcobalamin biosynthesis, ATP: cob(I)alamin adenosyltransferase, PduO-type, N-terminal YP_008825102.1 KO: K04029; InterPro: IPR012381: Ethanolamine/propanediol utilisation protein, EutP/PduV YP_008825104.1 InterPro: IPR011663: UbiC transcription regulator-associated YP_008825105.1 InterPro: IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR011055: Duplicated hybrid motif; IPR013338: Lysozyme domain, subfamily 2; IPR016047: Peptidase M23 YP_008825107.1 InterPro: IPR005502: ADP-ribosylation/Crystallin J1 YP_008825109.1 InterPro: IPR000212: DNA helicase, UvrD/REP type; IPR014016: Helicase, superfamily 1, UvrD-related YP_008825111.1 InterPro: IPR018647: Domain of unknown function DUF2075 YP_008825112.1 KO: K09384; InterPro: IPR000305: Excinuclease ABC, C subunit, N-terminal; IPR014001: DEAD-like helicase; IPR018647: Domain of unknown function DUF2075 YP_008825113.1 KO: K02013: iron complex transport system ATP-binding protein [EC:3.6.3.34]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825114.1 InterPro: IPR002779: Adenosylcobalamin biosynthesis, ATP: cob(I)alamin adenosyltransferase, EutT/PduO type; IPR016030: Adenosylcobalamin biosynthesis, ATP: cob(I)alamin adenosyltransferase-like; IPR017858: Adenosylcobalamin biosynthesis, ATP: cob(I)alamin adenosyltransferase, PduO-type, N-terminal YP_008825115.1 KO: K02015: iron complex transport system permease protein; InterPro: IPR000522: ABC transporter, permease protein YP_008825116.1 KO: K02016: iron complex transport system substrate-binding protein; InterPro: IPR002491: ABC transporter, periplasmic binding protein YP_008825117.1 InterPro: IPR006976: VanZ-like YP_008825119.1 InterPro: IPR023279: HD domain YP_008825123.1 InterPro: IPR006829: Transposase, Gram-positive bacteria YP_008825125.1 KO: K01753: D-serine dehydratase [EC:4.3.1.18]; InterPro: IPR000634: Serine/threonine dehydratase, pyridoxal-phosphate-binding site; IPR001926: Pyridoxal phosphate-dependent enzyme, beta subunit; IPR011780: D-serine ammonia-lyase YP_008825128.1 KO: K03933; InterPro: IPR004302: Chitin-binding, domain 3; IPR014756: Immunoglobulin E-set YP_008825129.1 InterPro: IPR000157: Toll/interleukin-1 receptor homology (TIR) domain YP_008825131.1 InterPro: IPR002502: N-acetylmuramoyl-L-alanine amidase domain; PHAST: PHAGE_Pseudo_phi15 YP_008825132.1 InterPro: IPR009708: Bacteriophage A118, holin; PHAST: PHAGE_Lister_A118 YP_008825134.1 InterPro: IPR010022: Protein of unknown function XkdX YP_008825136.1 InterPro: IPR018913: Domain of unknown function DUF2479 YP_008825137.1 InterPro: IPR011050: Pectin lyase fold/virulence factor; IPR012334: Pectin lyase fold; PHAST: PHAGE_Lister_A500 YP_008825138.1 InterPro: IPR010572: Bacteriophage 53, Orf003; PHAST: PHAGE_Lister_A500 YP_008825139.1 InterPro: IPR008841: Siphovirus tail component; PHAST: PHAGE_Staphy_StB20 YP_008825140.1 InterPro: IPR013491: Caudovirus, tape measure, N-terminal; PHAST: PHAGE_Temper_1 YP_008825141.1 InterPro: IPR009660: Bacteriophage A500, Gp15; PHAST: PHAGE_Bacill_BCJA1c YP_008825145.1 InterPro: IPR024411: Minor capsid protein, bacteriophage; PHAST: PHAGE_Bacill_BCJA1c YP_008825146.1 InterPro: IPR021080: Minor capsid protein; PHAST: PHAGE_Bacill_BCJA1c YP_008825147.1 InterPro: IPR019612: Minor capsid protein, putative; PHAST: PHAGE_Bacill_BCJA1c YP_008825151.1 InterPro: IPR009636: Bacteriophage mv4, Gp20; PHAST: PHAGE_Entero_phiFL4A YP_008825152.1 InterPro: IPR009319: Bacteriophage A118, Gp4, minor capsid; PHAST: PHAGE_Bacill_BCJA1c YP_008825153.1 InterPro: IPR006432: Portal protein, putative, A118-type; IPR021145: Portal protein; PHAST: PHAGE_Bacill_BCJA1c YP_008825155.1 InterPro: IPR004921: Terminase, large subunit; IPR006437: Bacteriophage terminase, large subunit; PHAST: PHAGE_Bacill_PBC1 YP_008825156.1 InterPro: IPR018925: Enterococcus phage phiFL1A, terminase small subunit; PHAST: PHAGE_Entero_phiFL1A YP_008825159.1 InterPro: IPR002502: N-acetylmuramoyl-L-alanine amidase domain; PHAST: PHAGE_Entero_phiEF24C YP_008825162.1 InterPro: IPR006524: Transcription activator, ArpU family; PHAST: PHAGE_Entero_phiFL1A YP_008825167.1 InterPro: IPR012865: Protein of unknown function DUF1642; PHAST: PHAGE_Lister_2389 YP_008825169.1 InterPro: IPR013216: Methyltransferase type 11; PHAST: PHAGE_Entero_phiFL1A YP_008825171.1 InterPro: IPR019096: YopX protein; IPR023385: YopX-like domain, beta barrel type; PHAST: PHAGE_Staphy_2638A YP_008825178.1 InterPro: IPR006343: Replication protein, DnaD/DnaB domain; IPR010056: Bacteriophage A500, Gp45, replisome organiser, N-terminal; PHAST: PHAGE_Brocho_BL3 YP_008825179.1 InterPro: IPR010373: Protein of unknown function DUF968; PHAST: PHAGE_Entero_phiEf11 YP_008825180.1 InterPro: IPR009425: Single-strand annealing protein SAK3; PHAST: PHAGE_Lactoc_bIL285 YP_008825187.1 KO: K07741; InterPro: IPR003497: BRO N-terminal domain; IPR005039: Bacteriophage P1, Ant1, C-terminal; PHAST: PHAGE_Staphy_phiMR25 YP_008825188.1 InterPro: IPR008489: Bacteriophage bIL285, Orf7 YP_008825190.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding; PHAST: PHAGE_Entero_phiFL1A YP_008825191.1 InterPro: IPR010359: Protein of unknown function DUF955 YP_008825193.1 InterPro: IPR023109: Integrase/recombinase, N-terminal; PHAST: PHAGE_Strept_YMC_2011 YP_008825194.1 KO: K14059; InterPro: IPR002104: Integrase, catalytic; IPR011010: DNA breaking-rejoining enzyme, catalytic core; IPR013762: Integrase-like, catalytic core; PHAST: PHAGE_Clostr_phiC2 YP_008825195.1 KO: K09014; InterPro: IPR000825: SUF system FeS cluster assembly, SufBD; IPR010231: SUF system FeS cluster assembly, SufB YP_008825196.1 KO: K04488; InterPro: IPR002871: NIF system FeS cluster assembly, NifU, N-terminal; IPR011341: SUF system FeS cluster assembly, SufU scaffold YP_008825197.1 KO: K11717: cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]; InterPro: IPR000192: Aminotransferase, class V/Cysteine desulfurase; IPR010970: Cysteine desulfurase, SufS; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain; IPR020578: Aminotransferase class-V pyridoxal-phosphate binding site YP_008825198.1 KO: K09015; InterPro: IPR000825: SUF system FeS cluster assembly, SufBD; IPR011542: SUF system FeS cluster assembly, SufD YP_008825199.1 KO: K09013; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR010230: ATPase SufC, SUF system FeS cluster assembly; IPR017871: ABC transporter, conserved site YP_008825200.1 KO: K02073: D-methionine transport system substrate-binding protein; InterPro: IPR004872: NLPA lipoprotein YP_008825201.1 KO: K02072: D-methionine transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825202.1 KO: K02071: D-methionine transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site; IPR017908: ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal; IPR018449: NIL domain YP_008825203.1 KO: K02437: glycine cleavage system H protein; InterPro: IPR002930: Glycine cleavage H-protein; IPR011053: Single hybrid motif YP_008825204.1 KO: K00537; InterPro: IPR006504: Transcriptional regulator Spx/MgsR; IPR006660: Arsenate reductase-like; IPR012336: Thioredoxin-like fold YP_008825205.1 KO: K05837; InterPro: IPR001182: Cell cycle protein; IPR018365: Cell cycle, FtsW / RodA / SpoVE, conserved site YP_008825206.1 InterPro: IPR000847: Transcription regulator HTH, LysR; IPR005119: LysR, substrate-binding; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825208.1 KO: K11041: exfoliative toxin A/B; InterPro: IPR004695: C4-dicarboxylate transporter/malic acid transport protein YP_008825209.1 InterPro: IPR018383: Uncharacterised protein family UPF0324, prokaryote YP_008825210.1 KO: K00567; InterPro: IPR001497: Methylated-DNA-[protein]-cysteine S-methyltransferase, active site; IPR008332: Methylguanine DNA methyltransferase, ribonuclease-like; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR014048: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_008825211.1 InterPro: IPR001173: Glycosyl transferase, family 2 YP_008825213.1 InterPro: IPR002477: Peptidoglycan binding-like; IPR015020: Protein of unknown function DUF1906; IPR017853: Glycoside hydrolase, superfamily YP_008825215.1 InterPro: IPR006480: Bacteriophage phi-29, Gp14, holin YP_008825216.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup; IPR018392: Peptidoglycan-binding lysin domain; IPR023346: Lysozyme-like domain YP_008825219.1 InterPro: IPR006710: Glycoside hydrolase, family 43; IPR023296: Glycosyl hydrolase family 43, five-bladed beta-propellor domain YP_008825220.1 KO: K01195: beta-glucuronidase [EC:3.2.1.31]; InterPro: IPR006102: Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; IPR006103: Glycoside hydrolase, family 2, TIM barrel; IPR006104: Glycoside hydrolase, family 2, N-terminal; IPR008979: Galactose-binding domain-like; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR013812: Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain; IPR017853: Glycoside hydrolase, superfamily YP_008825221.1 KO: K02026; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825222.1 InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825223.1 InterPro: IPR006059: Bacterial extracellular solute-binding, family 1 YP_008825224.1 InterPro: IPR001845: HTH ArsR-type DNA-binding domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825225.1 KO: K14155: cystathione beta-lyase [EC:4.4.1.8]; InterPro: IPR004839: Aminotransferase, class I/classII; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008825226.1 KO: K02791: PTS system, maltose and glucose-specific IIC component; InterPro: IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR011301: PTS system, maltose/glucose-specific IIBC component; IPR011535: Phosphotransferase system, glucose-like IIB component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008825227.1 InterPro: IPR000281: Helix-turn-helix protein RpiR; IPR001347: Sugar isomerase (SIS); IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825228.1 InterPro: IPR004547: Glucosamine-6-phosphate isomerase; IPR006148: Glucosamine/galactosamine-6-phosphate isomerase; IPR018321: Glucosamine-6-phosphate isomerase, conserved site YP_008825229.1 InterPro: IPR015250: Immunoprotective extracellular, immunoglobulin-like; IPR021652: Bacteriophage A118, Gp32 YP_008825230.1 KO: K00794: 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]; InterPro: IPR002180: 6,7-dimethyl-8-ribityllumazine synthase YP_008825231.1 KO: K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]; InterPro: IPR000422: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; IPR000926: GTP cyclohydrolase II, RibA; IPR016299: Riboflavin biosynthesis protein RibBA; IPR017945: DHBP synthase RibB-like alpha/beta domain YP_008825232.1 KO: K00793: riboflavin synthase [EC:2.5.1.9]; InterPro: IPR001783: Lumazine-binding protein; IPR017938: Riboflavin synthase-like beta-barrel; IPR023366: ATPase, F1/A1 complex, alpha subunit, N-terminal YP_008825233.1 KO: K11752: diaminohydroxyphosphoribosylaminopyrimi dine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]; InterPro: IPR002125: CMP/dCMP deaminase, zinc-binding; IPR002734: Bacterial bifunctional deaminase-reductase, C-terminal; IPR004794: Riboflavin biosynthesis protein RibD; IPR016192: APOBEC/CMP deaminase, zinc-binding; IPR016193: Cytidine deaminase-like; IPR024072: Dihydrofolate reductase-like domain YP_008825235.1 KO: K00761: uracil phosphoribosyltransferase [EC:2.4.2.9]; InterPro: IPR000836: Phosphoribosyltransferase; IPR005765: Uracil phosphoribosyl transferase YP_008825236.1 KO: K01066: esterase / lipase [EC:3.1.1.-]; InterPro: IPR013094: Alpha/beta hydrolase fold-3 YP_008825237.1 KO: K00600: glycine hydroxymethyltransferase [EC:2.1.2.1]; InterPro: IPR001085: Serine hydroxymethyltransferase; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain; IPR019798: Serine hydroxymethyltransferase, pyridoxal phosphate binding site YP_008825238.1 KO: K07566; InterPro: IPR004388: Sua5/YciO/YrdC/YwlC; IPR005145: SUA5; IPR006070: Sua5/YciO/YrdC, N-terminal; IPR010923: Translation factor, SUA5 type; IPR017945: DHBP synthase RibB-like alpha/beta domain YP_008825239.1 KO: K02493; InterPro: IPR002052: DNA methylase, N-6 adenine-specific, conserved site; IPR004556: Modification methylase HemK; IPR007848: Methyltransferase small; IPR019874: Protein-(glutamine-N5) methyltransferase, release factor-specific YP_008825240.1 KO: K02835; InterPro: IPR000352: Peptide chain release factor class I/class II; IPR004373: Peptide chain release factor 1; IPR005139: Peptide chain release factor YP_008825241.1 KO: K00857: thymidine kinase [EC:2.7.1.21]; InterPro: IPR001267: Thymidine kinase; IPR020633: Thymidine kinase, conserved site; IPR020634: Thymidine kinase, subgroup YP_008825242.1 InterPro: IPR013217: Methyltransferase type 12 YP_008825244.1 KO: K07533; InterPro: IPR000297: Peptidyl-prolyl cis-trans isomerase, PpiC-type; IPR008880: Trigger factor, C-terminal, bacterial; IPR023059: Foldase protein PrsA YP_008825245.1 KO: K03100: signal peptidase I [EC:3.4.21.89]; InterPro: IPR000223: Peptidase S26A, signal peptidase I; IPR011056: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain; IPR015927: Peptidase S24/S26A/S26B/S26C; IPR019757: Peptidase S26A, signal peptidase I, lysine active site; IPR019758: Peptidase S26A, signal peptidase I, conserved site; IPR019759: Peptidase S24/S26A/S26B YP_008825248.1 InterPro: IPR003445: Cation transporter YP_008825249.1 KO: K01928: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [EC:6.3.2.13]; InterPro: IPR013221: Mur ligase, central; IPR013564: Domain of unknown function DUF1727 YP_008825250.1 KO: K07009; InterPro: IPR011698: CobB/CobQ-like glutamine amidotransferase; IPR017929: CobB/CobQ glutamine amidotransferase YP_008825251.1 KO: K00009: mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]; InterPro: IPR000669: Mannitol dehydrogenase; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR013118: Mannitol dehydrogenase, C-terminal; IPR013131: Mannitol dehydrogenase, N-terminal; IPR013328: Dehydrogenase, multihelical; IPR016040: NAD(P)-binding domain; IPR023027: Mannitol dehydrogenase, conserved site; IPR023028: Mannitol-1-phosphate 5-dehydrogenase YP_008825252.1 KO: K02798: PTS system, mannitol-specific IIA component [EC:2.7.1.69]; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR016152: Phosphotransferase/anion transporter YP_008825253.1 KO: K02800: PTS system, mannitol-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR004718: Phosphotransferase system, mannitol-specific enzyme IIC; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013014: Phosphotransferase system, EIIC component, type 2 YP_008825256.1 InterPro: IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR008044: Bacteriophage SFi21, lysin YP_008825259.1 InterPro: IPR024414: Uncharacterised protein family PrgI YP_008825263.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR008454: Collagen-binding surface protein Cna-like, B-type domain; IPR008970: Collagen-binding surface protein Cna, B-type domain YP_008825264.1 KO: K02798: PTS system, mannitol-specific IIA component [EC:2.7.1.69]; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR016152: Phosphotransferase/anion transporter YP_008825265.1 KO: K03483; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR007737: M trans-acting positive regulator; IPR011608: PRD; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013196: Helix-turn-helix, type 11; IPR016152: Phosphotransferase/anion transporter YP_008825266.1 KO: K02800: PTS system, mannitol-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013014: Phosphotransferase system, EIIC component, type 2 YP_008825267.1 KO: K06216; InterPro: IPR010651: Sugar transport YP_008825268.1 KO: K06726: D-ribose pyranase [EC:5.-.-.-]; InterPro: IPR007721: D-ribose pyranase RbsD/L-fucose mutarotase FucU; IPR023064: D-ribose pyranase; IPR023750: D-ribose pyranase RbsD-like YP_008825269.1 KO: K00852: ribokinase [EC:2.7.1.15]; InterPro: IPR002139: Ribokinase; IPR002173: Carbohydrate/puine kinase, PfkB, conserved site; IPR011611: Carbohydrate/purine kinase; IPR011877: Ribokinase, bacterial YP_008825270.1 KO: K01809: mannose-6-phosphate isomerase [EC:5.3.1.8]; InterPro: IPR001250: Mannose-6-phosphate isomerase, type I; IPR011051: Cupin, RmlC-type; IPR014628: Mannose-6-phosphate isomerase, Firmicutes type, short form; IPR014710: RmlC-like jelly roll fold YP_008825271.1 InterPro: IPR001466: Beta-lactamase-related; IPR012338: Beta-lactamase/transpeptidase-like YP_008825272.1 InterPro: IPR004360: Glyoxalase/fosfomycin resistance/dioxygenase YP_008825273.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008825274.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008825275.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal YP_008825276.1 InterPro: IPR001763: Rhodanese-like YP_008825277.1 KO: K01118; InterPro: IPR003680: Flavodoxin-like fold; IPR023048: NADH-azoreductase, FMN-dependent YP_008825278.1 InterPro: IPR015046: Enterocin A Immunity YP_008825281.1 KO: K07404: 6-phosphogluconolactonase [EC:3.1.1.31]; InterPro: IPR011048: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1; IPR015943: WD40/YVTN repeat-like-containing domain; IPR019405: Lactonase, 7-bladed beta propeller YP_008825282.1 KO: K02781: PTS system, glucitol/sorbitol-specific IIA component [EC:2.7.1.69]; InterPro: IPR004716: Phosphotransferase system, glucitol/sorbitol-specific IIA component YP_008825283.1 InterPro: IPR002549: Uncharacterised protein family UPF0118 YP_008825285.1 InterPro: IPR000917: Sulfatase; IPR017849: Alkaline phosphatase-like, alpha/beta/alpha; IPR017850: Alkaline-phosphatase-like, core domain YP_008825286.1 InterPro: IPR006710: Glycoside hydrolase, family 43; IPR016828: Alpha-L-arabinofuranosidase; IPR023296: Glycosyl hydrolase family 43, five-bladed beta-propellor domain YP_008825287.1 InterPro: IPR010720: Alpha-L-arabinofuranosidase, C-terminal; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily YP_008825288.1 InterPro: IPR006938: Protein of unknown function DUF624 YP_008825289.1 KO: K02026; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825290.1 InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825291.1 InterPro: IPR006059: Bacterial extracellular solute-binding, family 1 YP_008825292.1 KO: K01209: alpha-N-arabinofuranosidase [EC:3.2.1.55]; InterPro: IPR010720: Alpha-L-arabinofuranosidase, C-terminal; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily YP_008825293.1 InterPro: IPR001845: HTH ArsR-type DNA-binding domain; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016943: Uncharacterised conserved protein UCP030050, HTH transcriptional regulator, BH1869 YP_008825294.1 InterPro: IPR006175: YjgF/Yer057p/UK114 family; IPR013813: Endoribonuclease L-PSP/chorismate mutase-like YP_008825295.1 KO: K01916: NAD+ synthase [EC:6.3.1.5]; InterPro: IPR003694: NAD synthase; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR022310: NAD/GMP synthase; IPR022926: NH(3)-dependent NAD(+) synthetase YP_008825296.1 KO: K00763: nicotinate phosphoribosyltransferase [EC:2.4.2.11]; InterPro: IPR002638: Quinolinate phosphoribosyl transferase, C-terminal; IPR006405: Nicotinate phosphoribosyltransferase putative; IPR007229: Nicotinate phosphoribosyltransferase-related; IPR015977: Nicotinate phosphoribosyltransferase-like YP_008825297.1 InterPro: IPR014959: Protein of unknown function DUF1827 YP_008825298.1 InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative; IPR012925: TipAS antibiotic-recognition domain; IPR015358: Transcription regulator MerR, DNA binding YP_008825299.1 InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008825301.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008825302.1 KO: K04077: chaperonin GroEL; InterPro: IPR001844: Chaperonin Cpn60; IPR002423: Chaperonin Cpn60/TCP-1; IPR018370: Chaperonin Cpn60, conserved site YP_008825303.1 KO: K04078; InterPro: IPR011032: GroES-like; IPR018369: Chaperonin Cpn10, conserved site; IPR020818: Chaperonin Cpn10 YP_008825304.1 KO: K07052; InterPro: IPR003675: CAAX amino terminal protease YP_008825305.1 InterPro: IPR001279: Beta-lactamase-like YP_008825306.1 InterPro: IPR018604: Regulatory protein YycI YP_008825307.1 InterPro: IPR009996: Regulatory protein YycH YP_008825308.1 KO: K07652: two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]; InterPro: IPR000014: PAS; IPR000700: PAS-associated, C-terminal; IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric; IPR013767: PAS fold YP_008825309.1 KO: K07668: two-component system, OmpR family, response regulator VicR; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825310.1 InterPro: IPR007713: TMP repeat; IPR009343: Protein of unknown function DUF1002 YP_008825312.1 InterPro: IPR003797: DegV YP_008825313.1 InterPro: IPR014975: Protein of unknown function DUF1836 YP_008825314.1 InterPro: IPR001347: Sugar isomerase (SIS) YP_008825315.1 InterPro: IPR001347: Sugar isomerase (SIS) YP_008825316.1 KO: K02796: PTS system, mannose-specific IID component; InterPro: IPR004704: Phosphotransferase system, mannose/fructose/sorbose family IID component YP_008825317.1 KO: K02795: PTS system, mannose-specific IIC component; InterPro: IPR004700: Phosphotransferase system, sorbose-specific IIC subunit YP_008825318.1 KO: K02794: PTS system, mannose-specific IIB component [EC:2.7.1.69]; InterPro: IPR004720: Phosphotransferase system, sorbose subfamily IIB component YP_008825319.1 KO: K02793: PTS system, mannose-specific IIA component [EC:2.7.1.69]; InterPro: IPR004701: Phosphotransferase system, fructose subfamily IIA component YP_008825320.1 InterPro: IPR002078: RNA polymerase sigma factor 54, interaction; IPR004701: Phosphotransferase system, fructose subfamily IIA component; IPR011608: PRD YP_008825321.1 InterPro: IPR002078: RNA polymerase sigma factor 54, interaction YP_008825322.1 KO: K15524; InterPro: IPR000602: Glycoside hydrolase, family 38, core; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR011330: Glycoside hydrolase/deacetylase, beta/alpha-barrel; IPR011682: Glycosyl hydrolases 38, C-terminal; IPR015341: Glycoside hydrolase, family 38, central domain YP_008825323.1 KO: K02770: PTS system, fructose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR006327: Phosphotransferase system, fructose IIC component; IPR013014: Phosphotransferase system, EIIC component, type 2 YP_008825324.1 KO: K02769: PTS system, fructose-specific IIB component [EC:2.7.1.69]; InterPro: IPR003353: Phosphotransferase system, fructose-specific IIB subunit; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2 YP_008825325.1 KO: K02768: PTS system, fructose-specific IIA component [EC:2.7.1.69]; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR004715: Phosphotransferase system, IIA component fructose subfamily; IPR016152: Phosphotransferase/anion transporter YP_008825326.1 KO: K03491; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR007737: M trans-acting positive regulator; IPR011608: PRD; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013196: Helix-turn-helix, type 11; IPR016152: Phosphotransferase/anion transporter YP_008825327.1 InterPro: IPR000150: Cof protein; IPR013200: HAD superfamily hydrolase-like, type 3; IPR023214: HAD-like domain YP_008825328.1 KO: K02001: glycine betaine/proline transport system permease protein; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component; IPR007210: ABC-type glycine betaine transport system, substrate-binding domain YP_008825329.1 KO: K02000: glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]; InterPro: IPR000644: Cystathionine beta-synthase, core; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR005892: Glycine betaine/L-proline transport ATP-binding subunit; IPR017871: ABC transporter, conserved site YP_008825330.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR006037: Regulator of K+ conductance, C-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825331.1 KO: K01185; InterPro: IPR002053: Glycoside hydrolase, family 25; IPR008270: Glycoside hydrolase, family 25, active site; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR018077: Glycoside hydrolase, family 25 subgroup YP_008825332.1 KO: K06191; InterPro: IPR002109: Glutaredoxin; IPR011909: Glutaredoxin-like protein NrdH; IPR012336: Thioredoxin-like fold YP_008825333.1 KO: K00525: ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]; InterPro: IPR000788: Ribonucleotide reductase large subunit, C-terminal; IPR008926: Ribonucleotide reductase R1 subunit, N-terminal; IPR013346: Ribonucleoside-diphosphate reductase, alpha subunit; IPR013509: Ribonucleotide reductase large subunit, N-terminal; IPR013554: Ribonucleotide reductase N-terminal YP_008825334.1 KO: K00526: ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]; InterPro: IPR000358: Ribonucleotide reductase; IPR009078: Ferritin/ribonucleotide reductase-like; IPR012348: Ribonucleotide reductase-related YP_008825335.1 InterPro: IPR000846: Dihydrodipicolinate reductase, N-terminal; IPR016040: NAD(P)-binding domain YP_008825336.1 KO: K00259: alanine dehydrogenase [EC:1.4.1.1]; InterPro: IPR007698: Alanine dehydrogenase/PNT, NAD(H)-binding domain; IPR007886: Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal; IPR008141: Alanine dehydrogenase/pyridine nucleotide transhydrogenase YP_008825337.1 KO: K00833: adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]; InterPro: IPR005814: Aminotransferase class-III; IPR015421: Pyridoxal phosphate-dependent transferase, major region, subdomain 1; IPR015422: Pyridoxal phosphate-dependent transferase, major region, subdomain 2; IPR015424: Pyridoxal phosphate-dependent transferase, major domain YP_008825338.1 KO: K07088; InterPro: IPR004776: Auxin efflux carrier YP_008825339.1 KO: K03778: D-lactate dehydrogenase [EC:1.1.1.28]; InterPro: IPR006139: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; IPR006140: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; IPR016040: NAD(P)-binding domain YP_008825340.1 InterPro: IPR016040: NAD(P)-binding domain YP_008825341.1 InterPro: IPR002524: Cation efflux protein YP_008825343.1 InterPro: IPR010982: Lambda repressor-like, DNA-binding YP_008825346.1 InterPro: IPR012336: Thioredoxin-like fold; IPR013766: Thioredoxin domain YP_008825348.1 InterPro: IPR003159: Polysaccharide lyase family 8, central domain; IPR004103: Polysaccharide lyase family 8, C-terminal; IPR008929: Chondroitin AC/alginate lyase; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR011071: Polysaccharide lyase family 8-like, C-terminal; IPR012329: Polysaccharide lyase family 8, N-terminal; IPR012970: Polysaccharide lyase 8, N-terminal alpha-helical; IPR014718: Glycoside hydrolase-type carbohydrate-binding, subgroup YP_008825349.1 KO: K02796: PTS system, mannose-specific IID component; InterPro: IPR004704: Phosphotransferase system, mannose/fructose/sorbose family IID component YP_008825350.1 KO: K02795: PTS system, mannose-specific IIC component; InterPro: IPR004700: Phosphotransferase system, sorbose-specific IIC subunit YP_008825351.1 KO: K02793: PTS system, mannose-specific IIA component [EC:2.7.1.69]; InterPro: IPR004701: Phosphotransferase system, fructose subfamily IIA component; IPR004720: Phosphotransferase system, sorbose subfamily IIB component YP_008825352.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR011663: UbiC transcription regulator-associated; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825353.1 InterPro: IPR008928: Six-hairpin glycosidase-like; IPR010905: Glycosyl hydrolase, family 88; IPR012341: Six-hairpin glycosidase YP_008825354.1 KO: K01190: beta-galactosidase [EC:3.2.1.23]; InterPro: IPR001944: Glycoside hydrolase, family 35; IPR008979: Galactose-binding domain-like; IPR013781: Glycoside hydrolase, subgroup, catalytic domain; IPR017853: Glycoside hydrolase, superfamily; IPR019801: Glycoside hydrolase, family 35, conserved site YP_008825355.1 InterPro: IPR002560: Transposase, IS204/IS1001/IS1096/IS1165 YP_008825356.1 KO: K03548; InterPro: IPR002549: Uncharacterised protein family UPF0118 YP_008825357.1 KO: K07507; InterPro: IPR003416: MgtC/SapB transporter YP_008825358.1 KO: K02564: glucosamine-6-phosphate deaminase [EC:3.5.99.6]; InterPro: IPR004547: Glucosamine-6-phosphate isomerase; IPR006148: Glucosamine/galactosamine-6-phosphate isomerase; IPR018321: Glucosamine-6-phosphate isomerase, conserved site YP_008825359.1 InterPro: IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008825360.1 InterPro: IPR015414: SNARE associated Golgi protein YP_008825367.1 KO: K06926; InterPro: IPR007406: Prokaryotic chromosome segregation/condensation protein MukB, N-terminal YP_008825368.1 InterPro: IPR002502: N-acetylmuramoyl-L-alanine amidase domain YP_008825369.1 InterPro: IPR009708: Bacteriophage A118, holin YP_008825371.1 InterPro: IPR018913: Domain of unknown function DUF2479 YP_008825373.1 InterPro: IPR007119: Phage minor structural protein N-terminal domain; IPR010572: Bacteriophage 53, Orf003 YP_008825374.1 InterPro: IPR008841: Siphovirus tail component YP_008825375.1 InterPro: IPR013491: Caudovirus, tape measure, N-terminal; PHAST: PHAGE_Strept_MM1 YP_008825376.1 InterPro: IPR009660: Bacteriophage A500, Gp15; PHAST: PHAGE_Strept_MM1 YP_008825379.1 InterPro: IPR024411: Minor capsid protein, bacteriophage; PHAST: PHAGE_Strept_MM1 YP_008825380.1 InterPro: IPR021080: Minor capsid protein; PHAST: PHAGE_Strept_MM1 YP_008825381.1 InterPro: IPR019612: Minor capsid protein, putative; PHAST: PHAGE_Bacill_BCJA1c YP_008825383.1 InterPro: IPR024455: Caudovirus, capsid; PHAST: PHAGE_Lister_A118 YP_008825384.1 InterPro: IPR009636: Bacteriophage mv4, Gp20; PHAST: PHAGE_Lactob_phig1e YP_008825385.1 InterPro: IPR009319: Bacteriophage A118, Gp4, minor capsid; PHAST: PHAGE_Lactob_phig1e YP_008825386.1 InterPro: IPR006432: Portal protein, putative, A118-type; IPR021145: Portal protein; PHAST: PHAGE_Bacill_BCJA1c YP_008825387.1 KO: K06909; InterPro: IPR006437: Bacteriophage terminase, large subunit; IPR006701: Caudovirales, terminase large subunit; PHAST: PHAGE_Strept_MM1 YP_008825392.1 InterPro: IPR006524: Transcription activator, ArpU family; PHAST: PHAGE_Entero_phiEf11 YP_008825396.1 InterPro: IPR012865: Protein of unknown function DUF1642 YP_008825397.1 KO: K00558: DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]; InterPro: IPR001525: C-5 cytosine methyltransferase; IPR018117: DNA methylase, C-5 cytosine-specific, active site; PHAST: PHAGE_Strept_MM1 YP_008825398.1 InterPro: IPR019096: YopX protein; IPR023385: YopX-like domain, beta barrel type; PHAST: PHAGE_Entero_phiFL2A YP_008825402.1 InterPro: IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; PHAST: PHAGE_Lactob_c5 YP_008825403.1 InterPro: IPR010373: Protein of unknown function DUF968; PHAST: PHAGE_Entero_phiEf11 YP_008825404.1 InterPro: IPR009785: Lactobacillus prophage Lj928, Orf309; PHAST: PHAGE_Entero_phiEf11 YP_008825405.1 InterPro: IPR007499: ERF; PHAST: PHAGE_Entero_phiEf11 YP_008825410.1 InterPro: IPR018873: KilA-N, DNA-binding domain; IPR018878: Bacteriophage bIL285, Orf6, C-terminal; PHAST: PHAGE_Lactoc_bIL285 YP_008825412.1 InterPro: IPR010982: Lambda repressor-like, DNA-binding YP_008825415.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding; PHAST: PHAGE_Strept_MM1 YP_008825416.1 InterPro: IPR010359: Protein of unknown function DUF955; PHAST: PHAGE_Strept_MM1 YP_008825417.1 InterPro: IPR002104: Integrase, catalytic; IPR011010: DNA breaking-rejoining enzyme, catalytic core; IPR013762: Integrase-like, catalytic core; IPR023109: Integrase/recombinase, N-terminal; PHAST: PROPHAGE_Oceano_HTE831 YP_008825418.1 KO: K02935: large subunit ribosomal protein L7/L12; InterPro: IPR000206: Ribosomal protein L7/L12; IPR008932: Ribosomal protein L7/L12, oligomerisation; IPR013823: Ribosomal protein L7/L12, C-terminal; IPR014719: Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like YP_008825419.1 KO: K02864: large subunit ribosomal protein L10; InterPro: IPR001790: Ribosomal protein L10/acidic P0; IPR002363: Ribosomal protein L10, eubacterial, conserved site; IPR022973: Ribosomal protein L10 YP_008825420.1 KO: K02863: large subunit ribosomal protein L1; InterPro: IPR002143: Ribosomal protein L1; IPR005878: Ribosomal protein L1, bacterial-type; IPR016094: Ribosomal protein L1, 2-layer alpha/beta-sandwich; IPR016095: Ribosomal protein L1, 3-layer alpha/beta-sandwich; IPR023673: Ribosomal protein L1, conserved site; IPR023674: Ribosomal protein L1, superfamily YP_008825421.1 KO: K02867: large subunit ribosomal protein L11; InterPro: IPR000911: Ribosomal protein L11; IPR006519: Ribosomal protein L11, bacterial-type; IPR020783: Ribosomal protein L11, C-terminal; IPR020784: Ribosomal protein L11, N-terminal; IPR020785: Ribosomal protein L11, conserved site YP_008825422.1 KO: K01752: L-serine dehydratase [EC:4.3.1.17]; InterPro: IPR002912: Amino acid-binding ACT; IPR004643: Iron-sulphur-dependent L-serine dehydratase beta subunit; IPR005131: Serine dehydratase beta chain YP_008825423.1 KO: K01752: L-serine dehydratase [EC:4.3.1.17]; InterPro: IPR004642: Serine dehydratase, alpha subunit; IPR005130: Serine dehydratase-like, alpha subunit YP_008825424.1 InterPro: IPR006680: Amidohydrolase 1; IPR011059: Metal-dependent hydrolase, composite domain YP_008825425.1 KO: K01486: adenine deaminase [EC:3.5.4.2]; InterPro: IPR006679: Adenine deaminase; IPR006680: Amidohydrolase 1; IPR011059: Metal-dependent hydrolase, composite domain YP_008825426.1 KO: K02055; InterPro: IPR001188: Bacterial periplasmic spermidine/putrescine-binding protein; IPR006059: Bacterial extracellular solute-binding, family 1 YP_008825427.1 KO: K02052; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR008995: Molybdate/tungstate binding; IPR013611: Transport-associated OB, type 2; IPR017871: ABC transporter, conserved site YP_008825428.1 KO: K02053; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825429.1 KO: K02054; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825430.1 InterPro: IPR010315: Protein of unknown function DUF915, hydrolase-like YP_008825431.1 KO: K02601; InterPro: IPR001062: Transcription antitermination protein, NusG; IPR005824: KOW; IPR006645: Transcription antitermination protein, NusG, N-terminal; IPR008991: Translation protein SH3-like; IPR014722: Translation protein SH3-like, subgroup YP_008825434.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008825435.1 KO: K03073: preprotein translocase subunit SecE; InterPro: IPR001901: Protein translocase complex, SecE/Sec61-gamma subunit; IPR005807: SecE subunit of protein translocation complex YP_008825436.1 KO: K02913: large subunit ribosomal protein L33; InterPro: IPR001705: Ribosomal protein L33; IPR011332: Ribosomal protein, zinc-binding domain YP_008825437.1 InterPro: IPR000644: Cystathionine beta-synthase, core; IPR017036: Uncharacterised conserved protein UCP035040, CBS-type YP_008825438.1 InterPro: IPR010387: Bacteriophage Dp-1, QueT YP_008825439.1 KO: K07029; InterPro: IPR001206: Diacylglycerol kinase, catalytic domain; IPR005218: Diacylglycerol/lipid kinase YP_008825440.1 KO: K03581: exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]; InterPro: IPR003583: Helix-hairpin-helix DNA-binding motif, class 1; IPR006345: DNA helicase, RecD/TraA type YP_008825441.1 KO: K15634: probable phosphoglycerate mutase [EC:5.4.2.1]; InterPro: IPR013078: Histidine phosphatase superfamily, clade-1 YP_008825442.1 KO: K03216; InterPro: IPR001537: tRNA/rRNA methyltransferase, SpoU; IPR016914: tRNA (cytidine/uridine-2'-O-)-methyltransferase YP_008825443.1 KO: K00563; InterPro: IPR013216: Methyltransferase type 11 YP_008825444.1 KO: K06201; InterPro: IPR005627: Copper homeostasis protein CutC; IPR023648: Copper homeostasis CutC domain YP_008825445.1 KO: K06213; InterPro: IPR000644: Cystathionine beta-synthase, core; IPR006667: MgtE magnesium transporter, integral membrane; IPR006668: Magnesium transporter, MgtE intracellular domain; IPR006669: Divalent cation transporter; IPR013785: Aldolase-type TIM barrel YP_008825446.1 KO: K06180; InterPro: IPR006145: Pseudouridine synthase, RsuA and RluB/C/D/E/F; IPR006224: Pseudouridine synthase, RluC/RluD, conserved site; IPR006225: Pseudouridine synthase, RluC/RluD; IPR020103: Pseudouridine synthase, catalytic domain YP_008825447.1 KO: K00858: NAD+ kinase [EC:2.7.1.23]; InterPro: IPR002504: Inorganic polyphosphate/ATP-NAD kinase, predicted; IPR016064: ATP-NAD kinase, PpnK-type; IPR017437: ATP-NAD kinase, PpnK-type, all-beta; IPR017438: ATP-NAD kinase, PpnK-type, alpha/beta YP_008825448.1 KO: K07816: putative GTP pyrophosphokinase [EC:2.7.6.5]; InterPro: IPR007685: RelA/SpoT YP_008825449.1 InterPro: IPR008172: CYTH domain; IPR009195: Uncharacterised protein family YjbK; IPR023577: CYTH-like domain YP_008825453.1 InterPro: IPR008997: Ricin B-related lectin YP_008825455.1 KO: K00615: transketolase [EC:2.2.1.1]; InterPro: IPR005475: Transketolase-like, pyrimidine-binding domain; IPR005476: Transketolase, C-terminal; IPR009014: Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; IPR015941: Transketolase-like, C-terminal YP_008825456.1 KO: K00615: transketolase [EC:2.2.1.1]; InterPro: IPR005474: Transketolase, N-terminal YP_008825457.1 KO: K03475: PTS system, ascorbate-specific IIC component; InterPro: IPR004703: Phosphotransferase system, sugar-specific permease component YP_008825458.1 KO: K02822: PTS system, ascorbate-specific IIB component [EC:2.7.1.69]; InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2 YP_008825459.1 InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR011608: PRD; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR016152: Phosphotransferase/anion transporter YP_008825460.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825461.1 KO: K00001: alcohol dehydrogenase [EC:1.1.1.1]; InterPro: IPR002085: Alcohol dehydrogenase superfamily, zinc-type; IPR002328: Alcohol dehydrogenase, zinc-type, conserved site; IPR011032: GroES-like; IPR013149: Alcohol dehydrogenase, C-terminal; IPR013154: Alcohol dehydrogenase GroES-like; IPR016040: NAD(P)-binding domain; IPR020843: Polyketide synthase, enoylreductase YP_008825462.1 KO: K08602; InterPro: IPR001567: Peptidase M3A/M3B; IPR004438: Peptidase M3B, oligoendopeptidase F; IPR013647: Peptidase M3B, oligopeptidase F, N-terminal; IPR024079: Metallopeptidase, catalytic domain YP_008825463.1 KO: K06198; InterPro: IPR010330: Competence-induced protein CoiA-like; IPR021176: Competence-induced protein CoiA-like, bacterial YP_008825464.1 KO: K16511; InterPro: IPR008681: Negative regulator of genetic competence, MecA YP_008825465.1 KO: K16509; InterPro: IPR006504: Transcriptional regulator Spx/MgsR; IPR006660: Arsenate reductase-like; IPR012336: Thioredoxin-like fold; IPR023731: Transcriptional regulator Spx YP_008825466.1 KO: K07025; InterPro: IPR005833: Haloacid dehalogenase/epoxide hydrolase; IPR005834: Haloacid dehalogenase-like hydrolase; IPR006439: HAD-superfamily hydrolase, subfamily IA, variant 1; IPR023214: HAD-like domain YP_008825467.1 InterPro: IPR000330: SNF2-related; IPR001650: Helicase, C-terminal; IPR007527: Zinc finger, SWIM-type; IPR013663: Helicase, SWF/SNF/SWI type, bacterial; IPR014001: DEAD-like helicase YP_008825468.1 KO: K03546 YP_008825469.1 KO: K03547; InterPro: IPR004593: Exonuclease SbcD; IPR004843: Metallophosphoesterase domain YP_008825470.1 KO: K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]; InterPro: IPR002123: Phospholipid/glycerol acyltransferase YP_008825471.1 InterPro: IPR002052: DNA methylase, N-6 adenine-specific, conserved site; IPR007848: Methyltransferase small YP_008825472.1 KO: K07461; InterPro: IPR000305: Excinuclease ABC, C subunit, N-terminal YP_008825473.1 InterPro: IPR002656: Acyltransferase 3; IPR013830: Esterase, SGNH hydrolase-type; IPR013831: Esterase, SGNH hydrolase-type, subgroup YP_008825475.1 InterPro: IPR005357: Uncharacterised domain UPF0150 YP_008825476.1 InterPro: IPR012933: Uncharacterised protein family UPF0395; IPR015146: Ribonucleotide reductase, stirrup YP_008825479.1 InterPro: IPR003740: Protein of unknown function DUF161; IPR019264: Domain of unknown function DUF2179 YP_008825480.1 KO: K01876: aspartyl-tRNA synthetase [EC:6.1.1.12]; InterPro: IPR002312: Aspartyl/Asparaginyl-tRNA synthetase, class IIb; IPR004115: GAD domain; IPR004364: Aminoacyl-tRNA synthetase, class II (D/K/N); IPR004365: Nucleic acid binding, OB-fold, tRNA/helicase-type; IPR004524: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial-type; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR018150: Aminoacyl-tRNA synthetase, class II (D/K/N)-like YP_008825481.1 KO: K01892: histidyl-tRNA synthetase [EC:6.1.1.21]; InterPro: IPR002314: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; IPR004154: Anticodon-binding; IPR004516: Histidyl-tRNA synthetase, class IIa; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR015807: Histidyl-tRNA synthetase, class IIa, subgroup YP_008825482.1 KO: K06607; InterPro: IPR001395: Aldo/keto reductase; IPR018170: Aldo/keto reductase, conserved site; IPR020471: Aldo/keto reductase subgroup; IPR023210: NADP-dependent oxidoreductase domain YP_008825483.1 InterPro: IPR007712: Plasmid stabilisation system YP_008825485.1 KO: K00517: [EC:1.14.-.-]; InterPro: IPR001128: Cytochrome P450; IPR002397: Cytochrome P450, B-class YP_008825486.1 KO: K07560; InterPro: IPR003732: D-tyrosyl-tRNA(Tyr) deacylase; IPR023509: D-Tyr tRNAtyr deacylase-like domain YP_008825487.1 KO: K00951: GTP pyrophosphokinase [EC:2.7.6.5]; InterPro: IPR003607: Metal-dependent phosphohydrolase, HD domain; IPR004095: TGS; IPR004811: RelA/SpoT protein; IPR006674: Metal-dependent phosphohydrolase, HD subdomain; IPR007685: RelA/SpoT; IPR012675: Beta-grasp fold, ferredoxin-type; IPR012676: TGS-like YP_008825488.1 KO: K09761; InterPro: IPR006700: Ribosomal RNA small subunit methyltransferase E; IPR015947: PUA-like domain YP_008825489.1 KO: K02687; InterPro: IPR004498: Ribosomal protein L11 methyltransferase; IPR010456: Ribosomal L11 methyltransferase, PrmA YP_008825490.1 InterPro: IPR021380: Protein of unknown function DUF3013 YP_008825491.1 KO: K03652: DNA-3-methyladenine glycosylase [EC:3.2.2.21]; InterPro: IPR003180: Methylpurine-DNA glycosylase (MPG); IPR011034: Formyl transferase, C-terminal-like YP_008825492.1 KO: K07478; InterPro: IPR003593: ATPase, AAA+ type, core; IPR003959: ATPase, AAA-type, core; IPR021886: MgsA AAA+ ATPase C-terminal YP_008825494.1 InterPro: IPR006015: Universal stress protein A; IPR006016: UspA; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008825495.1 KO: K02808: PTS system, sucrose-specific IIA component [EC:2.7.1.69]; InterPro: IPR001127: Phosphotransferase system, sugar-specific permease EIIA 1 domain; IPR001996: Phosphotransferase system, EIIB component, type 1; IPR003352: Phosphotransferase system, EIIC; IPR010973: Phosphotransferase system, sucrose-specific IIBC component; IPR011055: Duplicated hybrid motif; IPR011535: Phosphotransferase system, glucose-like IIB component; IPR013013: Phosphotransferase system, EIIC component, type 1; IPR018113: Phosphotransferase system EIIB/cysteine, phosphorylation site YP_008825496.1 KO: K01193: beta-fructofuranosidase [EC:3.2.1.26]; InterPro: IPR001362: Glycoside hydrolase, family 32; IPR006232: Sucrose-6-phosphate hydrolase; IPR008985: Concanavalin A-like lectin/glucanase; IPR013148: Glycosyl hydrolases family 32, N-terminal; IPR013189: Glycosyl hydrolase family 32, C-terminal; IPR018053: Glycoside hydrolase, family 32, active site; IPR023296: Glycosyl hydrolase family 43, five-bladed beta-propellor domain YP_008825497.1 KO: K03484; InterPro: IPR000843: Transcription regulator HTH, LacI; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR010982: Lambda repressor-like, DNA-binding YP_008825499.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008825501.1 InterPro: IPR019931: LPXTG-motif cell wall anchor YP_008825502.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008825504.1 InterPro: IPR003709: Peptidase M15B/M15C; IPR009045: Hedgehog signalling/DD-peptidase zinc-binding domain YP_008825505.1 InterPro: IPR002559: Transposase, IS4-like YP_008825506.1 KO: K00925: acetate kinase [EC:2.7.2.1]; InterPro: IPR000890: Aliphatic acid kinase, short-chain; IPR004372: Acetate/Proprionate kinase; IPR023865: Aliphatic acid kinase, short-chain, conserved site YP_008825507.1 KO: K00571; InterPro: IPR003356: DNA methylase, adenine-specific; IPR016843: S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted YP_008825509.1 KO: K02248 YP_008825512.1 KO: K02245; InterPro: IPR000983: Bacterial general secretion pathway protein G; IPR001120: Prokaryotic N-terminal methylation site; IPR012902: Prepilin-type cleavage/methylation, N-terminal; IPR016940: Competence operon G, ComGC YP_008825513.1 KO: K02244; InterPro: IPR003004: Bacterial general secretion pathway protein F; IPR018076: Type II secretion system F domain YP_008825514.1 KO: K02243; InterPro: IPR001482: Type II secretion system protein E YP_008825515.1 KO: K01486: adenine deaminase [EC:3.5.4.2]; InterPro: IPR006679: Adenine deaminase; IPR006680: Amidohydrolase 1; IPR011059: Metal-dependent hydrolase, composite domain YP_008825516.1 KO: K03439; InterPro: IPR003358: tRNA (guanine-N-7) methyltransferase YP_008825517.1 InterPro: IPR002575: Aminoglycoside phosphotransferase; IPR011009: Protein kinase-like domain YP_008825518.1 KO: K01992; InterPro: IPR010288: Bacterial ABC transporter EcsB YP_008825519.1 KO: K01990; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825520.1 KO: K02503; InterPro: IPR001310: Histidine triad (HIT) protein; IPR011146: Histidine triad-like motif; IPR011151: Histidine triad motif; IPR019808: Histidine triad, conserved site YP_008825521.1 InterPro: IPR024623: Uncharacterised protein family YtxH YP_008825522.1 KO: K07533; InterPro: IPR000297: Peptidyl-prolyl cis-trans isomerase, PpiC-type; IPR008880: Trigger factor, C-terminal, bacterial; IPR023059: Foldase protein PrsA YP_008825523.1 KO: K03698; InterPro: IPR003607: Metal-dependent phosphohydrolase, HD domain; IPR004365: Nucleic acid binding, OB-fold, tRNA/helicase-type; IPR006674: Metal-dependent phosphohydrolase, HD subdomain; IPR023279: HD domain YP_008825525.1 InterPro: IPR014576: Predicted phosphoesterase, YhaO type; IPR024654: Calcineurin-like phosphoesterase superfamily domain YP_008825528.1 KO: K01198: xylan 1,4-beta-xylosidase [EC:3.2.1.37]; InterPro: IPR006710: Glycoside hydrolase, family 43; IPR008985: Concanavalin A-like lectin/glucanase; IPR013320: Concanavalin A-like lectin/glucanase, subgroup; IPR023296: Glycosyl hydrolase family 43, five-bladed beta-propellor domain YP_008825530.1 InterPro: IPR000070: Pectinesterase, catalytic; IPR011050: Pectin lyase fold/virulence factor; IPR012334: Pectin lyase fold; IPR018040: Pectinesterase, active site YP_008825532.1 InterPro: IPR000743: Glycoside hydrolase, family 28; IPR006626: Parallel beta-helix repeat; IPR011050: Pectin lyase fold/virulence factor; IPR012334: Pectin lyase fold YP_008825533.1 KO: K15532; InterPro: IPR008928: Six-hairpin glycosidase-like; IPR010905: Glycosyl hydrolase, family 88; IPR012341: Six-hairpin glycosidase YP_008825534.1 KO: K02027; InterPro: IPR006059: Bacterial extracellular solute-binding, family 1 YP_008825535.1 InterPro: IPR006938: Protein of unknown function DUF624 YP_008825536.1 InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825537.1 KO: K02026; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825538.1 InterPro: IPR009057: Homeodomain-like; IPR012287: Homeodomain-related; IPR018060: Helix-turn-helix, AraC type, DNA binding YP_008825539.1 KO: K00041: tagaturonate reductase [EC:1.1.1.58]; InterPro: IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR013118: Mannitol dehydrogenase, C-terminal; IPR013131: Mannitol dehydrogenase, N-terminal; IPR013328: Dehydrogenase, multihelical; IPR016040: NAD(P)-binding domain YP_008825540.1 KO: K01685: altronate hydrolase [EC:4.2.1.7]; InterPro: IPR007392: D-galactarate dehydratase/Altronate hydrolase, C-terminal; IPR013974: SAF domain YP_008825541.1 KO: K01812: glucuronate isomerase [EC:5.3.1.12]; InterPro: IPR003766: Uronate isomerase; IPR023177: Uronate isomerase, domain 2 YP_008825542.1 InterPro: IPR001087: Lipase, GDSL; IPR013830: Esterase, SGNH hydrolase-type; IPR013831: Esterase, SGNH hydrolase-type, subgroup YP_008825544.1 InterPro: IPR010368: Uncharacterised protein family UPF0342; IPR023378: YheA/YmcA-like domain YP_008825545.1 KO: K12555: penicillin-binding protein 2A [EC:2.4.1.129 2.3.2.-]; InterPro: IPR001264: Glycosyl transferase, family 51; IPR001460: Penicillin-binding protein, transpeptidase; IPR011816: Penicillin-binding protein 1A; IPR012338: Beta-lactamase/transpeptidase-like YP_008825546.1 KO: K06180; InterPro: IPR006145: Pseudouridine synthase, RsuA and RluB/C/D/E/F; IPR006224: Pseudouridine synthase, RluC/RluD, conserved site; IPR006225: Pseudouridine synthase, RluC/RluD; IPR020103: Pseudouridine synthase, catalytic domain YP_008825547.1 InterPro: IPR010499: Bacterial transcription activator, effector binding; IPR011256: Regulatory factor, effector, bacterial YP_008825549.1 KO: K00847: fructokinase [EC:2.7.1.4]; InterPro: IPR000600: ROK YP_008825550.1 KO: K01191: alpha-mannosidase [EC:3.2.1.24]; InterPro: IPR000602: Glycoside hydrolase, family 38, core; IPR011013: Glycoside hydrolase-type carbohydrate-binding; IPR011330: Glycoside hydrolase/deacetylase, beta/alpha-barrel; IPR011682: Glycosyl hydrolases 38, C-terminal; IPR015341: Glycoside hydrolase, family 38, central domain YP_008825551.1 KO: K09704; InterPro: IPR008313: Uncharacterised conserved protein UCP028846; IPR008928: Six-hairpin glycosidase-like; IPR012341: Six-hairpin glycosidase YP_008825552.1 InterPro: IPR000524: Transcription regulator HTH, GntR; IPR001761: Periplasmic binding protein/LacI transcriptional regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825553.1 InterPro: IPR005887: Alpha-1,2-mannosidase, putative; IPR008928: Six-hairpin glycosidase-like; IPR012939: Glycosyl hydrolase 92 YP_008825554.1 KO: K07720: two-component system, response regulator YesN; InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR009057: Homeodomain-like; IPR011006: CheY-like superfamily; IPR012287: Homeodomain-related; IPR018060: Helix-turn-helix, AraC type, DNA binding; IPR018062: Helix-turn-helix, AraC type, subdomain 2; IPR020449: Transcription regulator HTH, AraC- type YP_008825555.1 KO: K07718: two-component system, sensor histidine kinase YesM [EC:2.7.13.3]; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR010559: Signal transduction histidine kinase, internal region YP_008825556.1 InterPro: IPR006938: Protein of unknown function DUF624 YP_008825557.1 KO: K02027; InterPro: IPR006059: Bacterial extracellular solute-binding, family 1; IPR022627: Domain of unknown function DUF3502 YP_008825558.1 KO: K02026; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825559.1 KO: K02025; InterPro: IPR000515: Binding-protein-dependent transport systems inner membrane component YP_008825560.1 KO: K06183; InterPro: IPR000748: Pseudouridine synthase, RsuA/RluB/E/F; IPR002942: RNA-binding S4; IPR006145: Pseudouridine synthase, RsuA and RluB/C/D/E/F; IPR018496: Pseudouridine synthase, RsuA and RluB/E/F, conserved site; IPR020103: Pseudouridine synthase, catalytic domain YP_008825561.1 InterPro: IPR002797: Polysaccharide biosynthesis protein YP_008825562.1 KO: K01928: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [EC:6.3.2.13]; InterPro: IPR004101: Mur ligase, C-terminal; IPR005761: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; IPR013221: Mur ligase, central YP_008825563.1 KO: K02761: PTS system, cellobiose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR004501: Phosphotransferase system, lactose/cellobiose IIC component YP_008825565.1 KO: K02759: PTS system, cellobiose-specific IIA component [EC:2.7.1.69]; InterPro: IPR003188: Phosphotransferase system, lactose/cellobiose-specific IIA subunit YP_008825566.1 KO: K03491; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR007737: M trans-acting positive regulator; IPR011608: PRD; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013196: Helix-turn-helix, type 11; IPR016152: Phosphotransferase/anion transporter YP_008825567.1 InterPro: IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013012: Phosphotransferase system, EIIB component, type 3 YP_008825569.1 KO: K01869: leucyl-tRNA synthetase [EC:6.1.1.4]; InterPro: IPR001412: Aminoacyl-tRNA synthetase, class I, conserved site; IPR002300: Aminoacyl-tRNA synthetase, class Ia; IPR002302: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; IPR009008: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing domain; IPR009080: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; IPR013155: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008825570.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup; IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR013338: Lysozyme domain, subfamily 2; IPR018392: Peptidoglycan-binding lysin domain YP_008825571.1 InterPro: IPR000326: Phosphatidic acid phosphatase type 2/haloperoxidase; IPR016118: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal YP_008825572.1 KO: K07139; InterPro: IPR005911: Conserved hypothetical protein CHP01212; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM; IPR013785: Aldolase-type TIM barrel YP_008825573.1 InterPro: IPR010719: Putative rRNA methylase YP_008825575.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017940: ABC transporter, integral membrane type 1 YP_008825576.1 KO: K06147; InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017940: ABC transporter, integral membrane type 1 YP_008825578.1 InterPro: IPR006683: Thioesterase superfamily YP_008825579.1 KO: K03930; InterPro: IPR000801: Putative esterase YP_008825580.1 InterPro: IPR011701: Major facilitator superfamily; IPR016196: Major facilitator superfamily domain, general substrate transporter; IPR020846: Major facilitator superfamily domain YP_008825581.1 KO: K00789: S-adenosylmethionine synthetase [EC:2.5.1.6]; InterPro: IPR002133: S-adenosylmethionine synthetase; IPR022628: S-adenosylmethionine synthetase, N-terminal; IPR022629: S-adenosylmethionine synthetase, central domain; IPR022630: S-adenosylmethionine synthetase, C-terminal; IPR022631: S-adenosylmethionine synthetase, conserved site; IPR022636: S-adenosylmethionine synthetase superfamily YP_008825588.1 KO: K04567: lysyl-tRNA synthetase, class II [EC:6.1.1.6]; InterPro: IPR002313: Lysyl-tRNA synthetase, class II; IPR004364: Aminoacyl-tRNA synthetase, class II (D/K/N); IPR004365: Nucleic acid binding, OB-fold, tRNA/helicase-type; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR018149: Lysyl-tRNA synthetase, class II, C-terminal; IPR018150: Aminoacyl-tRNA synthetase, class II (D/K/N)-like YP_008825589.1 KO: K05540; InterPro: IPR001269: tRNA-dihydrouridine synthase; IPR004652: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; IPR013785: Aldolase-type TIM barrel; IPR018517: tRNA-dihydrouridine synthase, conserved site; IPR024036: tRNA-dihydrouridine synthase, putative, C-terminal YP_008825590.1 KO: K04083; InterPro: IPR000397: Heat shock protein Hsp33; IPR016153: Heat shock protein Hsp33, N-terminal; IPR016154: Heat shock protein Hsp33, C-terminal YP_008825591.1 KO: K03798; InterPro: IPR000642: Peptidase M41; IPR003593: ATPase, AAA+ type, core; IPR003959: ATPase, AAA-type, core; IPR003960: ATPase, AAA-type, conserved site; IPR005936: Peptidase M41, FtsH; IPR011546: Peptidase M41, FtsH extracellular YP_008825592.1 KO: K00760: hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]; InterPro: IPR000836: Phosphoribosyltransferase; IPR005904: Hypoxanthine phosphoribosyl transferase YP_008825593.1 KO: K04075; InterPro: IPR011063: tRNA(Ile)-lysidine/2-thiocytidine synthase; IPR012094: Lysidine-tRNA(Ile) synthetase; IPR012795: Lysidine-tRNA(Ile) synthetase, N-terminal; IPR012796: Lysidine-tRNA(Ile) synthetase, C-terminal; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold YP_008825594.1 KO: K07571; InterPro: IPR003029: Ribosomal protein S1, RNA-binding domain; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like; IPR022967: RNA-binding domain, S1 YP_008825595.1 KO: K13052; InterPro: IPR007060: Septum formation initiator YP_008825596.1 InterPro: IPR002942: RNA-binding S4 YP_008825597.1 KO: K03328; InterPro: IPR002797: Polysaccharide biosynthesis protein YP_008825598.1 KO: K03723: transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]; InterPro: IPR001650: Helicase, C-terminal; IPR003711: CarD-like/TRCF domain; IPR004576: Transcription-repair coupling factor; IPR005118: Transcription-repair-coupling factor domain; IPR011545: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; IPR014001: DEAD-like helicase YP_008825599.1 KO: K01056; InterPro: IPR001328: Peptidyl-tRNA hydrolase; IPR018171: Peptidyl-tRNA hydrolase, conserved site YP_008825600.1 KO: K00016: L-lactate dehydrogenase [EC:1.1.1.27]; InterPro: IPR001236: Lactate/malate dehydrogenase, N-terminal; IPR001557: L-lactate/malate dehydrogenase; IPR011304: L-lactate dehydrogenase; IPR015955: Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; IPR016040: NAD(P)-binding domain; IPR018177: L-lactate dehydrogenase, active site; IPR022383: Lactate/malate dehydrogenase, C-terminal YP_008825601.1 InterPro: IPR005490: L,D-transpeptidase catalytic domain; IPR022029: Putative peptidoglycan binding domain YP_008825602.1 InterPro: IPR006976: VanZ-like; IPR016747: Phosphotransbutyrylase YP_008825603.1 KO: K01417; InterPro: IPR001567: Peptidase M3A/M3B; IPR011977: Peptidase M3B, oligoendopeptidase-related clade 3; IPR013647: Peptidase M3B, oligopeptidase F, N-terminal; IPR024079: Metallopeptidase, catalytic domain YP_008825604.1 InterPro: IPR000064: NLP/P60 YP_008825605.1 KO: K03571; InterPro: IPR007227: Cell shape-determining protein MreD YP_008825606.1 KO: K03570; InterPro: IPR007221: Rod shape-determining protein MreC YP_008825607.1 KO: K00949: thiamine pyrophosphokinase [EC:2.7.6.2]; InterPro: IPR006282: Thiamin pyrophosphokinase; IPR007371: Thiamin pyrophosphokinase, catalytic domain; IPR007373: Thiamin pyrophosphokinase, vitamin B1-binding domain YP_008825608.1 KO: K01783: ribulose-phosphate 3-epimerase [EC:5.1.3.1]; InterPro: IPR000056: Ribulose-phosphate 3-epimerase; IPR011060: Ribulose-phosphate binding barrel; IPR013785: Aldolase-type TIM barrel YP_008825609.1 KO: K06949; InterPro: IPR004881: Ribosome biogenesis GTPase RsgA, putative; IPR010914: EngC GTPase; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like YP_008825610.1 KO: K08884; InterPro: IPR000719: Protein kinase, catalytic domain; IPR002290: Serine/threonine- / dual-specificity protein kinase, catalytic domain; IPR005543: PASTA; IPR008271: Serine/threonine-protein kinase, active site; IPR011009: Protein kinase-like domain; IPR017441: Protein kinase, ATP binding site; IPR020635: Tyrosine-protein kinase, catalytic domain YP_008825611.1 KO: K01090; InterPro: IPR001932: Protein phosphatase 2C-like; IPR015655: Protein phosphatase 2C YP_008825612.1 KO: K03500; InterPro: IPR001678: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; IPR004573: rRNA small subunit methyltransferase B; IPR006027: NusB/RsmB/TIM44; IPR018314: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site; IPR023267: RNA (C5-cytosine) methyltransferase YP_008825613.1 KO: K00604: methionyl-tRNA formyltransferase [EC:2.1.2.9]; InterPro: IPR002376: Formyl transferase, N-terminal; IPR005793: Formyl transferase, C-terminal; IPR005794: Methionyl-tRNA formyltransferase; IPR011034: Formyl transferase, C-terminal-like; IPR015518: Methionine tRNA Formyltransferase-like YP_008825614.1 KO: K01462; InterPro: IPR000181: Formylmethionine deformylase; IPR023635: Peptide deformylase YP_008825615.1 KO: K04066: primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]; InterPro: IPR001650: Helicase, C-terminal; IPR005259: Primosomal protein n; IPR006935: Helicase/UvrB domain; IPR014001: DEAD-like helicase YP_008825616.1 KO: K03060: DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]; InterPro: IPR003716: DNA-directed RNA polymerase, omega subunit; IPR006110: RNA polymerase, subunit omega/K/RPABC2; IPR012293: RNA polymerase subunit, RPB6/omega YP_008825617.1 KO: K00942: guanylate kinase [EC:2.7.4.8]; InterPro: IPR008144: Guanylate kinase; IPR008145: Guanylate kinase/L-type calcium channel; IPR017665: Guanylate kinase, sub-group; IPR020590: Guanylate kinase, conserved site YP_008825618.1 InterPro: IPR005229: Conserved hypothetical protein CHP00255; IPR013527: YicC-like, N-terminal; IPR013551: Domain of unknown function DUF1732 YP_008825619.1 InterPro: IPR017154: Uncharacterised conserved protein UCP037246 YP_008825620.1 InterPro: IPR016035: Acyl transferase/acyl hydrolase/lysophospholipase YP_008825621.1 InterPro: IPR002641: Patatin/Phospholipase A2-related; IPR016035: Acyl transferase/acyl hydrolase/lysophospholipase YP_008825623.1 InterPro: IPR012651: Thiamine transporter ThiT/YuaJ YP_008825624.1 KO: K00948: ribose-phosphate pyrophosphokinase [EC:2.7.6.1]; InterPro: IPR000836: Phosphoribosyltransferase; IPR000842: Phosphoribosyl pyrophosphate synthetase, conserved site; IPR005946: Ribose-phosphate diphosphokinase YP_008825625.1 KO: K04042: bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]; InterPro: IPR001451: Bacterial transferase hexapeptide repeat; IPR005835: Nucleotidyl transferase; IPR005882: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; IPR011004: Trimeric LpxA-like; IPR018357: Hexapeptide transferase, conserved site YP_008825626.1 KO: K09685; InterPro: IPR000836: Phosphoribosyltransferase; IPR010078: Pur operon repressor; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR015265: Bacterial purine repressor, N-terminal YP_008825627.1 KO: K09816: zinc transport system permease protein; InterPro: IPR001626: ABC-3 YP_008825628.1 KO: K09817: zinc transport system ATP-binding protein [EC:3.6.3.-]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825629.1 KO: K09815: zinc transport system substrate-binding protein; InterPro: IPR006127: ABC transporter, metal-binding lipoprotein; IPR006128: Adhesion lipoprotein; IPR006129: Adhesin B YP_008825630.1 KO: K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]; InterPro: IPR004424: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; IPR006204: GHMP kinase; IPR013750: GHMP kinase, C-terminal; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008825631.1 KO: K14205: phosphatidylglycerol lysyltransferase [EC:2.3.2.3]; InterPro: IPR022791: Lysylphosphatidylglycerol synthetase/UPF0104; IPR024320: Lysylphosphatidylglycerol synthetase, domain of unknown function DUF2156 YP_008825632.1 KO: K00286: pyrroline-5-carboxylate reductase [EC:1.5.1.2]; InterPro: IPR000304: Pyrroline-5-carboxylate reductase; IPR004455: NADP oxidoreductase, coenzyme F420-dependent; IPR008927: 6-phosphogluconate dehydrogenase, C-terminal-like; IPR016040: NAD(P)-binding domain YP_008825637.1 KO: K06950; InterPro: IPR003607: Metal-dependent phosphohydrolase, HD domain; IPR004087: K Homology; IPR004088: K Homology, type 1; IPR006674: Metal-dependent phosphohydrolase, HD subdomain; IPR006675: Uncharacterised domain HDIG; IPR017705: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; IPR018111: K Homology, type 1, subgroup; IPR022711: 2',3'-cyclic-nucleotide 2'-phosphodiesterase, N-terminal; IPR023279: HD domain YP_008825638.1 KO: K03553: recombination protein RecA; InterPro: IPR003593: ATPase, AAA+ type, core; IPR013765: DNA recombination and repair protein RecA; IPR020584: DNA recombination/repair protein RecA, conserved site; IPR020587: DNA recombination/repair protein RecA, monomer-monomer interface; IPR020588: DNA recombination/repair protein RecA/RadB, ATP-binding domain; IPR023400: DNA recombination and repair protein RecA, C-terminal YP_008825639.1 KO: K03742; InterPro: IPR001453: Molybdopterin binding; IPR008135: Competence-induced protein CinA; IPR008136: CinA, C-terminal; IPR020817: Molybdenum cofactor synthesis YP_008825641.1 KO: K00995: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]; InterPro: IPR000462: CDP-alcohol phosphatidyltransferase; IPR004570: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_008825642.1 InterPro: IPR010982: Lambda repressor-like, DNA-binding YP_008825643.1 InterPro: IPR007863: Peptidase M16, C-terminal; IPR011237: Peptidase M16, core; IPR011249: Metalloenzyme, LuxS/M16 peptidase-like, metal-binding; IPR011765: Peptidase M16, N-terminal YP_008825644.1 InterPro: IPR007863: Peptidase M16, C-terminal; IPR011237: Peptidase M16, core; IPR011249: Metalloenzyme, LuxS/M16 peptidase-like, metal-binding YP_008825645.1 KO: K03282; InterPro: IPR001185: Large-conductance mechanosensitive channel YP_008825646.1 KO: K02348; InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008825647.1 InterPro: IPR009366: Protein of unknown function DUF1021 YP_008825648.1 KO: K03091; InterPro: IPR007627: RNA polymerase sigma-70 region 2; IPR013325: RNA polymerase sigma factor, region 2; IPR014284: RNA polymerase sigma-70 YP_008825649.1 KO: K06962; InterPro: IPR010298: Protein of unknown function DUF901; IPR021707: Protein of unknown function DUF3290 YP_008825650.1 KO: K03218; InterPro: IPR001537: tRNA/rRNA methyltransferase, SpoU; IPR004441: RNA methyltransferase TrmH family; IPR013123: RNA 2-O ribose methyltransferase, substrate binding YP_008825651.1 KO: K11145; InterPro: IPR000999: Ribonuclease III; IPR008226: Uncharacterised conserved protein UCP005520 YP_008825652.1 KO: K01883: cysteinyl-tRNA synthetase [EC:6.1.1.16]; InterPro: IPR009080: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR015273: Cysteinyl-tRNA synthetase, class Ia, DALR; IPR015803: Cysteinyl-tRNA synthetase; IPR024909: Cysteinyl-tRNA synthetase/mycothiol ligase YP_008825653.1 KO: K00640: serine O-acetyltransferase [EC:2.3.1.30]; InterPro: IPR001451: Bacterial transferase hexapeptide repeat; IPR005881: Serine O-acetyltransferase; IPR011004: Trimeric LpxA-like YP_008825654.1 KO: K09698: nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]; InterPro: IPR000924: Glutamyl/glutaminyl-tRNA synthetase, class Ib; IPR001412: Aminoacyl-tRNA synthetase, class I, conserved site; IPR004527: Glutamyl-tRNA synthetase, class Ib, bacterial/mitochondrial; IPR008925: Aminoacyl-tRNA synthetase, class I, anticodon-binding; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR020058: Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain; IPR020061: Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain; IPR020751: Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 YP_008825655.1 InterPro: IPR002716: PilT protein, N-terminal; IPR002792: Deoxyribonuclease/rho motif-related TRAM; IPR006596: Nucleotide binding protein, PINc YP_008825656.1 KO: K04485; InterPro: IPR003593: ATPase, AAA+ type, core; IPR004504: DNA repair protein RadA; IPR014774: Circadian clock protein KaiC/DNA repair protein RadA; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008825657.1 KO: K01520: dUTP pyrophosphatase [EC:3.6.1.23]; InterPro: IPR008180: DeoxyUTP pyrophosphatase YP_008825658.1 KO: K00931: glutamate 5-kinase [EC:2.7.2.11]; InterPro: IPR001048: Aspartate/glutamate/uridylate kinase; IPR001057: Glutamate/acetylglutamate kinase; IPR005715: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; IPR011529: Glutamate 5-kinase; IPR019797: Glutamate 5-kinase, conserved site YP_008825659.1 KO: K00147: glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]; InterPro: IPR000965: Gamma-glutamyl phosphate reductase GPR; IPR012134: Glutamate-5-semialdehyde dehydrogenase; IPR015590: Aldehyde dehydrogenase domain; IPR016161: Aldehyde/histidinol dehydrogenase; IPR016162: Aldehyde dehydrogenase, N-terminal; IPR016163: Aldehyde dehydrogenase, C-terminal; IPR020593: Gamma-glutamyl phosphate reductase GPR, conserved site YP_008825662.1 InterPro: IPR006637: Clostridial hydrophobic YP_008825663.1 InterPro: IPR000423: Flagellar protein FlgJ type-1; IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR006637: Clostridial hydrophobic; IPR013338: Lysozyme domain, subfamily 2 YP_008825664.1 InterPro: IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR013338: Lysozyme domain, subfamily 2 YP_008825665.1 InterPro: IPR008030: NmrA-like; IPR016040: NAD(P)-binding domain YP_008825666.1 InterPro: IPR000944: Transcription regulator Rrf2-like YP_008825667.1 InterPro: IPR007527: Zinc finger, SWIM-type YP_008825670.1 InterPro: IPR006829: Transposase, Gram-positive bacteria YP_008825676.1 InterPro: IPR002543: Cell division protein FtsK/SpoIIIE; IPR023839: Type VII secretion protein EssC YP_008825677.1 InterPro: IPR018778: Type VII secretion system EssB YP_008825678.1 InterPro: IPR014921: Uncharacterised protein family, ubiquitin-like YukD YP_008825680.1 InterPro: IPR023838: Type VII secretion system EsaA YP_008825681.1 InterPro: IPR010310: Type VII secretion system ESAT-6-like YP_008825682.1 InterPro: IPR010057: Transcription activator MutR, C-terminal; IPR010982: Lambda repressor-like, DNA-binding YP_008825683.1 KO: K02291: phytoene synthase [EC:2.5.1.32]; InterPro: IPR002060: Squalene/phytoene synthase; IPR008949: Terpenoid synthase; IPR019845: Squalene/phytoene synthase, conserved site YP_008825684.1 KO: K10209: 4,4'-diapophytoene desaturase [EC:1.3.8.2]; InterPro: IPR002937: Amine oxidase; IPR014105: Zeta-phytoene desaturase YP_008825685.1 InterPro: IPR001269: tRNA-dihydrouridine synthase; IPR013785: Aldolase-type TIM barrel; IPR018517: tRNA-dihydrouridine synthase, conserved site; IPR024036: tRNA-dihydrouridine synthase, putative, C-terminal YP_008825686.1 KO: K09686: antibiotic transport system permease protein; InterPro: IPR000412: ABC-2; IPR013525: ABC-2 type transporter; IPR013526: ABC-2 transporter YP_008825687.1 KO: K09687: antibiotic transport system ATP-binding protein; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825688.1 InterPro: IPR000432: DNA mismatch repair protein MutS, C-terminal YP_008825691.1 KO: K00854: xylulokinase [EC:2.7.1.17]; InterPro: IPR000577: Carbohydrate kinase, FGGY; IPR006000: Xylulokinase; IPR018483: Carbohydrate kinase, FGGY, conserved site; IPR018484: Carbohydrate kinase, FGGY, N-terminal; IPR018485: Carbohydrate kinase, FGGY, C-terminal YP_008825692.1 KO: K10439: ribose transport system substrate-binding protein YP_008825693.1 KO: K10440: ribose transport system permease protein; InterPro: IPR001851: ABC transporter, permease YP_008825694.1 KO: K10441: ribose transport system ATP-binding protein [EC:3.6.3.17]; InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825695.1 KO: K01198: xylan 1,4-beta-xylosidase [EC:3.2.1.37]; InterPro: IPR006710: Glycoside hydrolase, family 43; IPR008985: Concanavalin A-like lectin/glucanase; IPR013320: Concanavalin A-like lectin/glucanase, subgroup; IPR023296: Glycosyl hydrolase family 43, five-bladed beta-propellor domain YP_008825696.1 KO: K01805: xylose isomerase [EC:5.3.1.5]; InterPro: IPR001998: Xylose isomerase; IPR012307: Xylose isomerase, TIM barrel domain; IPR013022: Xylose isomerase-like, TIM barrel domain; IPR013452: Xylose isomerase, bacterial-type YP_008825697.1 InterPro: IPR000600: ROK; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825698.1 KO: K00615: transketolase [EC:2.2.1.1]; InterPro: IPR005474: Transketolase, N-terminal; IPR005475: Transketolase-like, pyrimidine-binding domain; IPR005476: Transketolase, C-terminal; IPR005478: Transketolase, bacterial-like; IPR009014: Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; IPR015941: Transketolase-like, C-terminal; IPR020826: Transketolase binding site YP_008825699.1 InterPro: IPR000056: Ribulose-phosphate 3-epimerase; IPR011060: Ribulose-phosphate binding barrel; IPR013785: Aldolase-type TIM barrel YP_008825700.1 KO: K00616: transaldolase [EC:2.2.1.2]; InterPro: IPR001585: Transaldolase; IPR004731: Transaldolase 3A/3B; IPR013785: Aldolase-type TIM barrel; IPR018225: Transaldolase, active site; IPR022999: Transaldolase 3B, putative YP_008825701.1 KO: K02770: PTS system, fructose-specific IIC component; InterPro: IPR003352: Phosphotransferase system, EIIC; IPR006327: Phosphotransferase system, fructose IIC component; IPR013014: Phosphotransferase system, EIIC component, type 2 YP_008825702.1 KO: K02769: PTS system, fructose-specific IIB component [EC:2.7.1.69]; InterPro: IPR003353: Phosphotransferase system, fructose-specific IIB subunit; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2 YP_008825703.1 KO: K02768: PTS system, fructose-specific IIA component [EC:2.7.1.69]; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR004715: Phosphotransferase system, IIA component fructose subfamily; IPR016152: Phosphotransferase/anion transporter YP_008825704.1 KO: K02769: PTS system, fructose-specific IIB component [EC:2.7.1.69]; InterPro: IPR003353: Phosphotransferase system, fructose-specific IIB subunit; IPR003501: Phosphotransferase system, EIIB component, type 2/3; IPR013011: Phosphotransferase system, EIIB component, type 2 YP_008825705.1 KO: K02806: PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]; InterPro: IPR002178: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; IPR016152: Phosphotransferase/anion transporter YP_008825706.1 KO: K02538; InterPro: IPR007737: M trans-acting positive regulator; IPR011608: PRD; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013011: Phosphotransferase system, EIIB component, type 2; IPR013196: Helix-turn-helix, type 11 YP_008825707.1 KO: K02996: small subunit ribosomal protein S9; InterPro: IPR000754: Ribosomal protein S9; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR020568: Ribosomal protein S5 domain 2-type fold; IPR020574: Ribosomal protein S9, conserved site YP_008825708.1 KO: K02871: large subunit ribosomal protein L13; InterPro: IPR005822: Ribosomal protein L13; IPR005823: Ribosomal protein L13, bacterial-type; IPR023563: Ribosomal protein L13, conserved site; IPR023564: Ribosomal protein L13 domain YP_008825709.1 KO: K01940: argininosuccinate synthase [EC:6.3.4.5]; InterPro: IPR001518: Argininosuccinate synthase; IPR014729: Rossmann-like alpha/beta/alpha sandwich fold; IPR018223: Argininosuccinate synthase, conserved site; IPR023434: Argininosuccinate synthase, type 1 subfamily; IPR024074: Argininosuccinate synthetase, catalytic/multimerisation domain body YP_008825710.1 KO: K01755: argininosuccinate lyase [EC:4.3.2.1]; InterPro: IPR000362: Fumarate lyase; IPR003031: Delta crystallin; IPR008948: L-Aspartase-like; IPR009049: Argininosuccinate lyase; IPR020557: Fumarate lyase, conserved site; IPR022761: Lyase 1, N-terminal YP_008825714.1 KO: K04047; InterPro: IPR002177: DNA-binding protein Dps; IPR008331: Ferritin/DPS protein domain; IPR009078: Ferritin/ribonucleotide reductase-like; IPR012347: Ferritin-related; IPR023188: DNA-binding protein Dps, conserved site YP_008825715.1 KO: K00851: gluconokinase [EC:2.7.1.12]; InterPro: IPR000577: Carbohydrate kinase, FGGY; IPR018483: Carbohydrate kinase, FGGY, conserved site; IPR018484: Carbohydrate kinase, FGGY, N-terminal; IPR018485: Carbohydrate kinase, FGGY, C-terminal YP_008825716.1 KO: K02236; InterPro: IPR010627: Peptidase A24A, N-terminal YP_008825717.1 KO: K07304; InterPro: IPR002569: Peptide methionine sulphoxide reductase MsrA YP_008825718.1 KO: K03046: DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]; InterPro: IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4; IPR012754: DNA-directed RNA polymerase, subunit beta-prime YP_008825719.1 KO: K03043: DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]; InterPro: IPR007120: DNA-directed RNA polymerase, subunit 2, domain 6; IPR007121: RNA polymerase, beta subunit, conserved site; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR010243: DNA-directed RNA polymerase, beta subunit, bacterial-type; IPR014724: RNA polymerase Rpb2, OB-fold; IPR015712: DNA-directed RNA polymerase, subunit 2; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain YP_008825720.1 KO: K03524: BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]; InterPro: IPR003142: Biotin protein ligase, C-terminal; IPR004143: Biotin/lipoate A/B protein ligase; IPR004408: Biotin--acetyl-CoA-carboxylase ligase; IPR008988: Transcriptional repressor, C-terminal; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008825726.1 KO: K00805: heptaprenyl diphosphate synthase [EC:2.5.1.30]; InterPro: IPR000092: Polyprenyl synthetase; IPR008949: Terpenoid synthase; IPR017446: Polyprenyl synthetase-related YP_008825727.1 KO: K00805: heptaprenyl diphosphate synthase [EC:2.5.1.30]; InterPro: IPR010898: Heptaprenyl diphosphate synthase component I; IPR014535: Predicted heptaprenyl diphosphate synthase, component I YP_008825728.1 InterPro: IPR010739: Protein of unknown function DUF1312; IPR024045: NusG, domain 2 YP_008825729.1 InterPro: IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008825730.1 InterPro: IPR007329: FMN-binding YP_008825731.1 KO: K03734; InterPro: IPR003374: ApbE family YP_008825732.1 InterPro: IPR000537: UbiA prenyltransferase family YP_008825735.1 InterPro: IPR011055: Duplicated hybrid motif; IPR023346: Lysozyme-like domain YP_008825737.1 InterPro: IPR024414: Uncharacterised protein family PrgI YP_008825740.1 InterPro: IPR003688: Ti-type conjugative transfer system, TraG-like YP_008825743.1 InterPro: IPR007737: M trans-acting positive regulator YP_008825744.1 InterPro: IPR007737: M trans-acting positive regulator YP_008825745.1 InterPro: IPR002560: Transposase, IS204/IS1001/IS1096/IS1165 YP_008825746.1 KO: K00383: glutathione reductase (NADPH) [EC:1.8.1.7]; InterPro: IPR004099: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; IPR006322: Glutathione reductase, eukaryote/bacterial; IPR012999: Pyridine nucleotide-disulphide oxidoreductase, class I, active site; IPR013027: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR016156: FAD/NAD-linked reductase, dimerisation; IPR023753: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain YP_008825747.1 KO: K08303: putative protease [EC:3.4.-.-]; InterPro: IPR001539: Peptidase U32 YP_008825748.1 InterPro: IPR001539: Peptidase U32 YP_008825749.1 KO: K03696; InterPro: IPR001270: Chaperonin ClpA/B; IPR001943: UvrB/UvrC protein; IPR003593: ATPase, AAA+ type, core; IPR003959: ATPase, AAA-type, core; IPR004176: Clp, N-terminal; IPR013093: ATPase, AAA-2; IPR018368: Chaperonin ClpA/B, conserved site; IPR019489: Clp ATPase, C-terminal; IPR023150: Double Clp-N motif YP_008825750.1 KO: K03708; InterPro: IPR008463: Firmicute transcriptional repressor of class III stress genes YP_008825754.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008825755.1 KO: K00936; InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008825756.1 KO: K01875: seryl-tRNA synthetase [EC:6.1.1.11]; InterPro: IPR002314: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; IPR002317: Seryl-tRNA synthetase, class IIa; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR010978: tRNA-binding arm; IPR015866: Seryl-tRNA synthetase, class IIa, N-terminal YP_008825757.1 KO: K00088: IMP dehydrogenase [EC:1.1.1.205]; InterPro: IPR000644: Cystathionine beta-synthase, core; IPR001093: IMP dehydrogenase/GMP reductase; IPR005990: IMP dehydrogenase; IPR013785: Aldolase-type TIM barrel; IPR015875: IMP dehydrogenase / GMP reductase, conserved site; IPR018529: IMP dehydrogenase-related YP_008825759.1 InterPro: IPR009214: Protein of unknown function DUF1129 YP_008825760.1 KO: K06942; InterPro: IPR004396: Conserved hypothetical protein CHP00092; IPR006073: GTP binding domain; IPR012675: Beta-grasp fold, ferredoxin-type; IPR012676: TGS-like; IPR013029: Domain of unknown function DUF933; IPR023192: TGS-like domain YP_008825761.1 InterPro: IPR009296: Protein of unknown function DUF951 YP_008825762.1 KO: K03497; InterPro: IPR003115: ParB-like nuclease; IPR004437: ParB-like partition protein; IPR010982: Lambda repressor-like, DNA-binding; IPR013741: Transcriptional repressor protein, KorB YP_008825763.1 KO: K03496; InterPro: IPR002586: Cobyrinic acid a,c-diamide synthase YP_008825764.1 KO: K03501; InterPro: IPR003682: rRNA small subunit methyltransferase G YP_008825765.1 InterPro: IPR002921: Lipase, class 3 YP_008825767.1 InterPro: IPR006976: VanZ-like YP_008825768.1 InterPro: IPR019046: Restriction endonuclease, type II, NgoPII YP_008825769.1 KO: K00558: DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]; InterPro: IPR001525: C-5 cytosine methyltransferase; IPR018117: DNA methylase, C-5 cytosine-specific, active site YP_008825774.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008825775.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008825778.1 KO: K07726; InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008825779.1 InterPro: IPR002104: Integrase, catalytic; IPR011010: DNA breaking-rejoining enzyme, catalytic core; IPR013762: Integrase-like, catalytic core; IPR023109: Integrase/recombinase, N-terminal YP_008825780.1 KO: K03495; InterPro: IPR002218: Glucose-inhibited division protein A-related; IPR004416: Glucose-inhibited division protein A; IPR020595: Glucose-inhibited division protein A-related, conserved site YP_008825781.1 KO: K03650; InterPro: IPR004520: tRNA modification GTPase TrmE; IPR005225: Small GTP-binding protein domain; IPR006073: GTP binding domain; IPR018948: GTP-binding protein TrmE, N-terminal YP_008825782.1 InterPro: IPR002765: Uncharacterised protein family UPF0145 YP_008825783.1 KO: K06346; InterPro: IPR001374: Single-stranded nucleic acid binding R3H; IPR004087: K Homology YP_008825784.1 KO: K03217: preprotein translocase subunit YidC; InterPro: IPR001708: Membrane insertion protein, OxaA/YidC; IPR023060: Membrane protein OxaA, firmicutes YP_008825785.1 KO: K03536; InterPro: IPR000100: Ribonuclease P; IPR014721: Ribosomal protein S5 domain 2-type fold, subgroup; IPR020568: Ribosomal protein S5 domain 2-type fold YP_008825786.1 KO: K02914: large subunit ribosomal protein L34; InterPro: IPR000271: Ribosomal protein L34; IPR020939: Ribosomal protein L34, conserved site YP_008825788.1 InterPro: IPR011053: Single hybrid motif YP_008825789.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825790.1 InterPro: IPR003838: Permease FtsX-like YP_008825791.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008825792.1 InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008825796.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825797.1 InterPro: IPR019931: LPXTG-motif cell wall anchor YP_008825799.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008825801.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11; IPR018356: Transcription regulator, HTH DeoR-type, conserved site YP_008825803.1 InterPro: IPR003812: Filamentation induced by cAMP/death on curing-related YP_008825804.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal YP_008825806.1 InterPro: IPR003961: Fibronectin, type III; IPR008997: Ricin B-related lectin; IPR013783: Immunoglobulin-like fold YP_008825807.1 InterPro: IPR001126: DNA-repair protein, UmuC-like; IPR017961: DNA polymerase, Y-family, little finger domain; IPR017962: DNA polymerase IV/DinB homologue, little finger domain; IPR017963: DNA-repair protein, UmuC-like, N-terminal YP_008825809.1 InterPro: IPR003738: Protein of unknown function DUF159 YP_008825811.1 InterPro: IPR002586: Cobyrinic acid a,c-diamide synthase YP_008825814.1 InterPro: IPR000944: Transcription regulator Rrf2-like; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR014820: Primase, C-terminal 1 YP_008825816.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008825827.1 InterPro: IPR002482: Peptidoglycan-binding Lysin subgroup; IPR018392: Peptidoglycan-binding lysin domain YP_008825828.1 InterPro: IPR008454: Collagen-binding surface protein Cna-like, B-type domain; IPR008970: Collagen-binding surface protein Cna, B-type domain YP_008825829.1 InterPro: IPR005754: Peptidase C60, sortase A/B; IPR023365: Peptidase C60A/B, sortase domain YP_008825830.1 InterPro: IPR017154: Uncharacterised conserved protein UCP037246 YP_008825832.1 InterPro: IPR003688: Ti-type conjugative transfer system, TraG-like YP_008825835.1 InterPro: IPR007688: Conjugal transfer, TrbL/VirB6 YP_008825836.1 InterPro: IPR024414: Uncharacterised protein family PrgI YP_008825838.1 InterPro: IPR007921: Cysteine, histidine-dependent amidohydrolase/peptidase YP_008825842.1 InterPro: IPR002694: Zinc finger, CHC2-type YP_008825847.1 InterPro: IPR008687: Bacterial mobilisation YP_008825848.1 InterPro: IPR005094: Endonuclease relaxase, MobA/VirD2 YP_008825849.1 InterPro: IPR012933: Uncharacterised protein family UPF0395; IPR015146: Ribonucleotide reductase, stirrup YP_008825850.1 InterPro: IPR005357: Uncharacterised domain UPF0150 YP_008825851.1 InterPro: IPR003812: Filamentation induced by cAMP/death on curing-related YP_008825855.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008825857.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008825859.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008825860.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008825862.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal; IPR006120: Resolvase, helix-turn-helix domain; IPR012287: Homeodomain-related YP_008825864.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008825866.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008825867.1 InterPro: IPR005046: Protein of unknown function DUF285, lipoprotein predicted; IPR011889: Bacterial surface protein 26-residue repeat YP_008825869.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal; IPR006120: Resolvase, helix-turn-helix domain; IPR009057: Homeodomain-like; IPR012287: Homeodomain-related YP_008825871.1 InterPro: IPR003477: PemK-like protein; IPR011067: Plasmid maintenance toxin/Cell growth inhibitor YP_008825873.1 InterPro: IPR011053: Single hybrid motif YP_008825874.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR017871: ABC transporter, conserved site YP_008825876.1 InterPro: IPR003838: Permease FtsX-like YP_008825877.1 InterPro: IPR001789: Signal transduction response regulator, receiver domain; IPR001867: Signal transduction response regulator, C-terminal; IPR011006: CheY-like superfamily; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR016032: Signal transduction response regulator, C-terminal effector YP_008825878.1 InterPro: IPR003594: ATPase-like, ATP-binding domain; IPR003660: HAMP linker domain; IPR003661: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; IPR004358: Signal transduction histidine kinase-related protein, C-terminal; IPR005467: Signal transduction histidine kinase, core; IPR009082: Signal transduction histidine kinase, homodimeric YP_008825880.1 InterPro: IPR003812: Filamentation induced by cAMP/death on curing-related YP_008825881.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal YP_008825883.1 InterPro: IPR004302: Chitin-binding, domain 3; IPR014756: Immunoglobulin E-set YP_008825886.1 InterPro: IPR000182: GCN5-related N-acetyltransferase (GNAT) domain; IPR016181: Acyl-CoA N-acyltransferase YP_008825887.1 InterPro: IPR007337: RelB antitoxin YP_008825888.1 InterPro: IPR012753: Addiction module toxin, RelE/StbE YP_008825889.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008825890.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008825892.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008825896.1 InterPro: IPR002514: Transposase IS3/IS911family YP_008825897.1 InterPro: IPR001584: Integrase, catalytic core; IPR012337: Ribonuclease H-like domain YP_008825898.1 InterPro: IPR004991: Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2; IPR023307: Aerolysin-like toxin, beta complex domain YP_008825901.1 InterPro: IPR000551: Transcription regulator HTH, MerR; IPR009061: DNA binding domain, putative YP_008825905.1 InterPro: IPR002586: Cobyrinic acid a,c-diamide synthase YP_008825906.1 InterPro: IPR010724: Replication initiator A, N-terminal YP_008825915.1 InterPro: IPR002481: Ferric-uptake regulator YP_008825918.1 InterPro: IPR000424: Primosome PriB/single-strand DNA-binding; IPR011344: Single-strand DNA-binding; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like YP_008825920.1 InterPro: IPR000477: Reverse transcriptase; IPR002711: HNH endonuclease; IPR003615: HNH nuclease YP_008825922.1 InterPro: IPR001405: Uncharacterised protein family UPF0758; IPR020891: Uncharacterised protein family UPF0758, conserved site YP_008825929.1 InterPro: IPR002145: CopG-like DNA-binding YP_008825930.1 InterPro: IPR007712: Plasmid stabilisation system YP_008825931.1 InterPro: IPR005046: Protein of unknown function DUF285, lipoprotein predicted; IPR011889: Bacterial surface protein 26-residue repeat YP_008825934.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor; IPR019948: Gram-positive anchor YP_008825936.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal; IPR006120: Resolvase, helix-turn-helix domain; IPR012287: Homeodomain-related YP_008825937.1 InterPro: IPR002491: ABC transporter, periplasmic binding protein YP_008825938.1 InterPro: IPR000522: ABC transporter, permease protein YP_008825939.1 InterPro: IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core YP_008825941.1 InterPro: IPR002560: Transposase, IS204/IS1001/IS1096/IS1165 YP_008825942.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor; IPR019948: Gram-positive anchor YP_008825944.1 InterPro: IPR007737: M trans-acting positive regulator YP_008825945.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008825947.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008825950.1 InterPro: IPR002525: Transposase, IS111A/IS1328/IS1533, N-terminal; IPR003346: Transposase, IS116/IS110/IS902 YP_008825955.1 InterPro: IPR011991: Winged helix-turn-helix transcription repressor DNA-binding YP_008825956.1 InterPro: IPR001647: DNA-binding HTH domain, TetR-type; IPR009057: Homeodomain-like; IPR015893: Tetracycline transcriptional regulator, TetR-like, C-terminal YP_008825957.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal; IPR006120: Resolvase, helix-turn-helix domain; IPR012287: Homeodomain-related YP_008825958.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008825960.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008825961.1 InterPro: IPR005046: Protein of unknown function DUF285, lipoprotein predicted; IPR011889: Bacterial surface protein 26-residue repeat YP_008825963.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal; IPR006120: Resolvase, helix-turn-helix domain; IPR009057: Homeodomain-like; IPR012287: Homeodomain-related YP_008825965.1 InterPro: IPR007737: M trans-acting positive regulator YP_008825967.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal YP_008825969.1 InterPro: IPR011646: KAP P-loop YP_008825973.1 InterPro: IPR000477: Reverse transcriptase YP_008825974.1 InterPro: IPR001126: DNA-repair protein, UmuC-like; IPR017961: DNA polymerase, Y-family, little finger domain; IPR017962: DNA polymerase IV/DinB homologue, little finger domain; IPR017963: DNA-repair protein, UmuC-like, N-terminal; IPR024728: DNA polymerase type-Y, HhH motif YP_008825977.1 InterPro: IPR002586: Cobyrinic acid a,c-diamide synthase YP_008825981.1 InterPro: IPR010712: Arsenical-resistance operon trans-acting repressor ArsD YP_008825983.1 InterPro: IPR010365: Protein of unknown function DUF961 YP_008825984.1 InterPro: IPR010365: Protein of unknown function DUF961 YP_008825985.1 InterPro: IPR002543: Cell division protein FtsK/SpoIIIE YP_008825986.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR003491: Replication initiation factor; IPR010982: Lambda repressor-like, DNA-binding YP_008825988.1 InterPro: IPR005754: Peptidase C60, sortase A/B; IPR023365: Peptidase C60A/B, sortase domain YP_008825990.1 InterPro: IPR001387: Helix-turn-helix type 3; IPR010982: Lambda repressor-like, DNA-binding YP_008825991.1 InterPro: IPR024735: Conjugative transposon protein TcpC YP_008825994.1 InterPro: IPR016628: ATPase, SAG2001, predicted YP_008825996.1 InterPro: IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR007921: Cysteine, histidine-dependent amidohydrolase/peptidase; IPR013338: Lysozyme domain, subfamily 2 YP_008825999.1 InterPro: IPR007337: RelB antitoxin YP_008826000.1 InterPro: IPR003477: PemK-like protein; IPR011067: Plasmid maintenance toxin/Cell growth inhibitor YP_008826001.1 InterPro: IPR003491: Replication initiation factor YP_008826002.1 InterPro: IPR015090: Bacterial epsilon antitoxin YP_008826261.1 InterPro: IPR000424: Primosome PriB/single-strand DNA-binding; IPR011344: Single-strand DNA-binding; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like YP_008826266.1 InterPro: IPR002145: CopG-like DNA-binding YP_008826269.1 InterPro: IPR002559: Transposase, IS4-like; IPR012337: Ribonuclease H-like domain; IPR014736: Transposase, Tn5-like, core YP_008826272.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008826274.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008826275.1 InterPro: IPR002559: Transposase, IS4-like; IPR012337: Ribonuclease H-like domain; IPR014736: Transposase, Tn5-like, core YP_008826276.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal YP_008826281.1 InterPro: IPR000477: Reverse transcriptase YP_008826282.1 InterPro: IPR001126: DNA-repair protein, UmuC-like; IPR017961: DNA polymerase, Y-family, little finger domain; IPR017962: DNA polymerase IV/DinB homologue, little finger domain; IPR017963: DNA-repair protein, UmuC-like, N-terminal; IPR024728: DNA polymerase type-Y, HhH motif YP_008826285.1 InterPro: IPR010985: Ribbon-helix-helix; IPR015354: DNA partition complex, ParG YP_008826286.1 InterPro: IPR002586: Cobyrinic acid a,c-diamide synthase YP_008826287.1 InterPro: IPR014820: Primase, C-terminal 1 YP_008826293.1 InterPro: IPR005754: Peptidase C60, sortase A/B; IPR023365: Peptidase C60A/B, sortase domain YP_008826295.1 InterPro: IPR005754: Peptidase C60, sortase A/B; IPR023365: Peptidase C60A/B, sortase domain YP_008826296.1 InterPro: IPR008454: Collagen-binding surface protein Cna-like, B-type domain; IPR008970: Collagen-binding surface protein Cna, B-type domain YP_008826297.1 InterPro: IPR005754: Peptidase C60, sortase A/B; IPR023365: Peptidase C60A/B, sortase domain YP_008826301.1 InterPro: IPR009063: Immunoglobulin/albumin-binding; IPR011490: Extracellular matrix-binding protein, Ebh; IPR014044: CAP domain YP_008826307.1 InterPro: IPR003688: Ti-type conjugative transfer system, TraG-like YP_008826309.1 InterPro: IPR020275: Uncharacterised protein family, plasmid pXO2-11 YP_008826312.1 InterPro: IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR011055: Duplicated hybrid motif; IPR016047: Peptidase M23 YP_008826317.1 InterPro: IPR020267: Uncharacterised protein family, plasmid pXO2-04 YP_008826322.1 InterPro: IPR012816: Conserved hypothetical protein CHP02464 YP_008826324.1 InterPro: IPR000380: DNA topoisomerase, type IA; IPR003601: DNA topoisomerase, type IA, domain 2; IPR003602: DNA topoisomerase, type IA, DNA-binding; IPR005738: DNA topoisomerase III, bacterial-type; IPR006171: Toprim domain; IPR013497: DNA topoisomerase, type IA, central; IPR013824: DNA topoisomerase, type IA, central region, subdomain 1; IPR013825: DNA topoisomerase, type IA, central region, subdomain 2; IPR023405: DNA topoisomerase, type IA, core domain; IPR023406: DNA topoisomerase, type IA, active site YP_008826327.1 InterPro: IPR014942: Protein of unknown function DUF1814 YP_008826328.1 InterPro: IPR000424: Primosome PriB/single-strand DNA-binding; IPR011344: Single-strand DNA-binding; IPR012340: Nucleic acid-binding, OB-fold; IPR016027: Nucleic acid-binding, OB-fold-like YP_008826333.1 InterPro: IPR002145: CopG-like DNA-binding YP_008826336.1 InterPro: IPR002559: Transposase, IS4-like; IPR012337: Ribonuclease H-like domain; IPR014736: Transposase, Tn5-like, core YP_008826337.1 InterPro: IPR001899: Surface protein from Gram-positive cocci; IPR019931: LPXTG-motif cell wall anchor YP_008826339.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008826344.1 InterPro: IPR002901: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; IPR007921: Cysteine, histidine-dependent amidohydrolase/peptidase; IPR013338: Lysozyme domain, subfamily 2 YP_008826347.1 InterPro: IPR007337: RelB antitoxin YP_008826348.1 InterPro: IPR003477: PemK-like protein; IPR011067: Plasmid maintenance toxin/Cell growth inhibitor YP_008826349.1 InterPro: IPR002633: Bacteriocin, class IIa; IPR023384: Bacteriocin, class IIa, conserved site; IPR023388: Bacteriocin class IIa domain YP_008826350.1 InterPro: IPR001140: ABC transporter, transmembrane domain; IPR003439: ABC transporter-like; IPR003593: ATPase, AAA+ type, core; IPR005074: Peptidase C39, bacteriocin processing; IPR005897: Peptidase C39, ABC-type bacteriocin transporter; IPR011527: ABC transporter, transmembrane domain, type 1; IPR017871: ABC transporter, conserved site; IPR017940: ABC transporter, integral membrane type 1 YP_008826351.1 InterPro: IPR015046: Enterocin A Immunity YP_008826352.1 InterPro: IPR019931: LPXTG-motif cell wall anchor YP_008826354.1 InterPro: IPR010317: Protein of unknown function DUF916, cell surface putative; IPR021759: Domain of unknown function DUF3324, C-terminal YP_008826356.1 InterPro: IPR007737: M trans-acting positive regulator; IPR011991: Winged helix-turn-helix transcription repressor DNA-binding; IPR013196: Helix-turn-helix, type 11 YP_008826358.1 InterPro: IPR006118: Recombinase, conserved site; IPR006119: Resolvase, N-terminal YP_008826360.1 InterPro: IPR011646: KAP P-loop