-- dump date 20120503_172119 -- class Genbank::misc_feature -- table misc_feature_note -- id note 44689000001 NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187 44689000002 NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187 44689000003 Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The...; Region: Heme_Cu_Oxidase_III_like; cl00211 44689000004 Subunit I/III interface; other site 44689000005 Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of...; Region: Cyt_c_Oxidase_III; cd01665 44689000006 Subunit III/Vb interface; other site 44689000007 Subunit III/VIa interface; other site 44689000008 Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of...; Region: Cyt_c_Oxidase_I; cd01663 44689000009 Subunit I/III interface; other site 44689000010 D-pathway; other site 44689000011 Subunit I/VIIc interface; other site 44689000012 Subunit I/IV interface; other site 44689000013 Subunit I/II interface; other site 44689000014 Low-spin heme (heme a) binding site; other site 44689000015 Subunit I/VIIa interface; other site 44689000016 Subunit I/VIa interface; other site 44689000017 Dimer interface; other site 44689000018 Putative water exit pathway; other site 44689000019 Binuclear center (heme a3/CuB); other site 44689000020 K-pathway; other site 44689000021 Subunit I/Vb interface; other site 44689000022 Putative proton exit pathway; other site 44689000023 Subunit I/VIb interface; other site 44689000024 Subunit I/VIc interface; other site 44689000025 Electron transfer pathway; other site 44689000026 Subunit I/VIIIb interface; other site 44689000027 Subunit I/VIIb interface; other site 44689000028 cytochrome c oxidase subunit II; Validated; Region: COX2; MTH00023 44689000029 Cytochrome C oxidase subunit II, transmembrane domain; Region: COX2_TM; pfam02790 44689000030 Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412 44689000031 LAGLIDADG endonuclease; Region: LAGLIDADG_1; pfam00961 44689000032 LAGLIDADG endonuclease; Region: LAGLIDADG_1; pfam00961 44689000033 LAGLIDADG endonuclease; Region: LAGLIDADG_1; pfam00961 44689000034 LAGLIDADG endonuclease; Region: LAGLIDADG_1; pfam00961 44689000035 LAGLIDADG DNA endonuclease family; Region: LAGLIDADG_2; pfam03161 44689000036 F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281 44689000037 ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874 44689000038 F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132 44689000039 beta subunit interaction interface; other site 44689000040 Walker A motif; other site 44689000041 ATP binding site; other site 44689000042 Walker B motif; other site 44689000043 Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cd00284 44689000044 cytochrome b; Provisional; Region: CYTB; MTH00156 44689000045 interchain domain interface; other site 44689000046 intrachain domain interface; other site 44689000047 heme bH binding site; other site 44689000048 Qi binding site; other site 44689000049 heme bL binding site; other site 44689000050 Qo binding site; other site 44689000051 Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: cytochrome_b_C; cl00193 44689000052 intrachain domain interface; other site 44689000053 interchain domain interface; other site 44689000054 Qi binding site; other site 44689000055 Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: cytochrome_b_C; cl00193 44689000056 Qo binding site; other site 44689000057 ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975 44689000058 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; Region: Oxidored_q4; cl00535 44689000059 NADH dehydrogenase; Region: NADHdh; cl00469 44689000060 NADH dehydrogenase subunit 6; Provisional; Region: ND6; MTH00057 44689000061 NADH dehydrogenase subunit J; Provisional; Region: PRK06433; cl14634 44689000062 ATP synthase subunit C; Region: ATP-synt_C; cl00466 44689000063 Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Region: Complex1_30kDa; cl00539 44689000064 Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Region: Complex1_49kDa; cl00417 44689000065 ATP synthase A chain; Region: ATP-synt_A; cl00413 44689000066 Ribosomal protein L11/L12; Region: RL11; smart00649 44689000067 Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349 44689000068 23S rRNA interface; other site 44689000069 L7/L12 interface; other site 44689000070 putative thiostrepton binding site; other site 44689000071 L25 interface; other site 44689000072 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368 44689000073 S17 interaction site; other site 44689000074 S8 interaction site; other site 44689000075 16S rRNA interaction site; other site 44689000076 streptomycin interaction site; other site 44689000077 23S rRNA interaction site; other site 44689000078 aminoacyl-tRNA interaction site (A-site); other site 44689000079 Ribosomal protein S7p/S5e; Region: Ribosomal_S7; cl00313 44689000080 ribosomal protein L2; Region: rpl2; CHL00052 44689000081 Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181 44689000082 Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947 44689000083 Ribosomal protein S19; Region: Ribosomal_S19; cl00350 44689000084 Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189 44689000085 Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433 44689000086 23S rRNA interface; other site 44689000087 5S rRNA interface; other site 44689000088 putative antibiotic binding site; other site 44689000089 L25 interface; other site 44689000090 L27 interface; other site 44689000091 Ribosomal protein L14p/L23e; Region: Ribosomal_L14; cl00328 44689000092 Ribosomal protein S14p/S29e; Region: Ribosomal_S14; cl00355 44689000093 Ribosomal protein S8; Region: Ribosomal_S8; cl00330 44689000094 Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]; Region: RplF; COG0097 44689000095 Ribosomal protein L6; Region: Ribosomal_L6; pfam00347 44689000096 Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Region: RpsM; COG0099 44689000097 Ribosomal protein S13/S18; Region: Ribosomal_S13; cl00331 44689000098 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207 44689000099 NADH-quinone oxidoreductase, chain G; Region: NuoG; TIGR01973 44689000100 catalytic loop; other site 44689000101 iron binding site; other site 44689000102 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588 44689000103 MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory...; Region: MopB_Res-Cmplx1_Nad11-M; cd02774 44689000104 NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590 44689000105 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662 44689000106 NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187 44689000107 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165 44689000108 RNA binding surface; other site 44689000109 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425 44689000110 rRNA interaction site; other site 44689000111 S8 interaction site; other site 44689000112 putative laminin-1 binding site; other site 44689000113 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492 44689000114 Dictyostelium (Slime Mold) REP protein; Region: Dicty_REP; pfam05086 44689000115 Transposase protein; Region: Transposase_37; pfam12017 44689000116 DNA topoisomerase VI subunit B; Provisional; Region: PRK14867 352472000117 contains vector sequence