-- dump date 20140619_065518 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 561229000001 SEQ_END SEQ_END NC_012912.1 4813854 4813854 DR NC_012912.1; contig end 4813854..4813854 Dickeya zeae Ech1591 YP_003002374.1 CDS Dd1591_0001 NC_012912.1 35 1429 D KEGG: eca:ECA4441 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 35..1429 Dickeya zeae Ech1591 8120193 YP_003002375.1 CDS Dd1591_0002 NC_012912.1 1434 2534 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1434..2534 Dickeya zeae Ech1591 8118947 YP_003002376.1 CDS recF NC_012912.1 2675 3760 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2675..3760 Dickeya zeae Ech1591 8118948 YP_003002377.1 CDS gyrB NC_012912.1 3778 6189 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 3778..6189 Dickeya zeae Ech1591 8118949 YP_003002378.1 CDS Dd1591_0005 NC_012912.1 6266 7450 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4437 MFS efflux transporter; major facilitator superfamily protein complement(6266..7450) Dickeya zeae Ech1591 8118950 YP_003002379.1 CDS Dd1591_0006 NC_012912.1 7640 8392 R predicted SAM-dependent methyltransferase; putative methyltransferase complement(7640..8392) Dickeya zeae Ech1591 8118951 YP_003002380.1 CDS Dd1591_0007 NC_012912.1 8389 10431 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: eca:ECA0055 oligopeptidase A; oligopeptidase A complement(8389..10431) Dickeya zeae Ech1591 8118952 YP_003002381.1 CDS Dd1591_0008 NC_012912.1 10557 10841 R KEGG: eca:ECA0060 hypothetical protein; hypothetical protein complement(10557..10841) Dickeya zeae Ech1591 8118953 YP_003002382.1 CDS Dd1591_0009 NC_012912.1 11228 12070 D PFAM: protein of unknown function DUF519; KEGG: eca:ECA0061 hypothetical protein; hypothetical protein 11228..12070 Dickeya zeae Ech1591 8118954 YP_003002383.1 CDS Dd1591_0010 NC_012912.1 12106 13020 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(12106..13020) Dickeya zeae Ech1591 8118955 YP_003002384.1 CDS Dd1591_0011 NC_012912.1 13031 14620 R PFAM: regulator of RNA terminal phosphate cyclase; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: esa:ESA_00062 hypothetical protein; Sigma 54 interacting domain-containing protein complement(13031..14620) Dickeya zeae Ech1591 8118956 YP_003002385.1 CDS Dd1591_0012 NC_012912.1 14875 15768 D PFAM: band 7 protein; KEGG: ect:ECIAI39_4422 hypothetical protein; hypothetical protein 14875..15768 Dickeya zeae Ech1591 8118957 YP_003002386.1 CDS Dd1591_0013 NC_012912.1 15836 17059 D PFAM: protein of unknown function UPF0027; KEGG: plu:plu4307 protein RtcB; hypothetical protein 15836..17059 Dickeya zeae Ech1591 8118958 YP_003002387.1 CDS Dd1591_0014 NC_012912.1 17448 18800 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 17448..18800 Dickeya zeae Ech1591 8118959 YP_003002388.1 CDS Dd1591_0015 NC_012912.1 19275 20690 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: esa:ESA_00303 hypothetical protein; membrane bound O-acyl transferase MBOAT family protein 19275..20690 Dickeya zeae Ech1591 8118960 YP_003002389.1 CDS Dd1591_0016 NC_012912.1 20677 21735 D KEGG: esa:ESA_00304 hypothetical protein; hypothetical protein 20677..21735 Dickeya zeae Ech1591 8118961 YP_003002390.1 CDS Dd1591_0017 NC_012912.1 21773 22951 D KEGG: esa:ESA_00305 hypothetical protein; hypothetical protein 21773..22951 Dickeya zeae Ech1591 8118962 YP_003002391.1 CDS Dd1591_0018 NC_012912.1 22994 23641 R PFAM: protein of unknown function DUF161; KEGG: ppu:PP_0642 hypothetical protein; hypothetical protein complement(22994..23641) Dickeya zeae Ech1591 8118963 YP_003002392.1 CDS Dd1591_0019 NC_012912.1 23842 24312 D PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: reu:Reut_C6217 AsnC family transcriptional regulator; AsnC family transcriptional regulator 23842..24312 Dickeya zeae Ech1591 8118964 YP_003002393.1 CDS Dd1591_0020 NC_012912.1 24315 25436 R PFAM: aminotransferase class V; KEGG: pzu:PHZ_c3273 phosphoserine aminotransferase; aminotransferase class V complement(24315..25436) Dickeya zeae Ech1591 8118965 YP_003002394.1 CDS Dd1591_0021 NC_012912.1 25671 26108 D PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_2129 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 25671..26108 Dickeya zeae Ech1591 8118966 YP_003002395.1 CDS Dd1591_0022 NC_012912.1 26161 26601 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dac:Daci_0312 MarR family transcriptional regulator; MarR family transcriptional regulator complement(26161..26601) Dickeya zeae Ech1591 8118967 YP_003002396.1 CDS Dd1591_0023 NC_012912.1 26710 27000 D KEGG: ypg:YpAngola_A3875 hypothetical protein; hypothetical protein 26710..27000 Dickeya zeae Ech1591 8118968 YP_003002397.1 CDS glk NC_012912.1 27141 28109 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 27141..28109 Dickeya zeae Ech1591 8118969 YP_003002398.1 CDS Dd1591_0025 NC_012912.1 28518 29405 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cak:Caul_0574 LysR family transcriptional regulator; LysR family transcriptional regulator complement(28518..29405) Dickeya zeae Ech1591 8118970 YP_003002399.1 CDS Dd1591_0026 NC_012912.1 29507 30526 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nar:Saro_1864 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 29507..30526 Dickeya zeae Ech1591 8118971 YP_003002400.1 CDS Dd1591_0028 NC_012912.1 31185 32303 R TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: eca:ECA0070 hypothetical protein; hypothetical protein complement(31185..32303) Dickeya zeae Ech1591 8118973 YP_003002401.1 CDS Dd1591_0029 NC_012912.1 32300 33340 R PFAM: Luciferase-like monooxygenase; KEGG: eca:ECA0071 putative monooxygenase; Luciferase-like monooxygenase complement(32300..33340) Dickeya zeae Ech1591 8118974 YP_003002402.1 CDS Dd1591_0030 NC_012912.1 33343 35019 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA0072 ABC transporter ATP-binding protein; ABC transporter complement(33343..35019) Dickeya zeae Ech1591 8118975 YP_003002403.1 CDS Dd1591_0031 NC_012912.1 35016 35876 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0073 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(35016..35876) Dickeya zeae Ech1591 8118976 YP_003002404.1 CDS Dd1591_0032 NC_012912.1 35878 36819 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0074 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(35878..36819) Dickeya zeae Ech1591 8118977 YP_003002405.1 CDS Dd1591_0033 NC_012912.1 36844 38487 R PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA0075 ABC-type transporter, substrate binding protein; extracellular solute-binding protein family 5 complement(36844..38487) Dickeya zeae Ech1591 8118978 YP_003002406.1 CDS Dd1591_0034 NC_012912.1 38815 39066 D PFAM: protein of unknown function DUF1471; KEGG: plu:plu4502 hypothetical protein; hypothetical protein 38815..39066 Dickeya zeae Ech1591 8118979 YP_003002407.1 CDS avtA NC_012912.1 39224 40480 R transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase complement(39224..40480) Dickeya zeae Ech1591 8118980 YP_003002408.1 CDS Dd1591_0036 NC_012912.1 40873 42081 D KEGG: eca:ECA4385 hypothetical protein; hypothetical protein 40873..42081 Dickeya zeae Ech1591 8118981 YP_003002409.1 CDS Dd1591_0037 NC_012912.1 42201 42482 D PFAM: virulence-associated protein D (VapD) conserved region; KEGG: hsm:HSM_1448 virulence-associated protein D (VapD) region; virulence-associated protein D (VapD) conserved region 42201..42482 Dickeya zeae Ech1591 8118982 YP_003002410.1 CDS Dd1591_0038 NC_012912.1 42542 43504 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: eca:ECA0078 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(42542..43504) Dickeya zeae Ech1591 8118983 YP_003002411.1 CDS Dd1591_0039 NC_012912.1 44061 44516 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0081 hypothetical protein; GCN5-related N-acetyltransferase complement(44061..44516) Dickeya zeae Ech1591 8118984 YP_003002412.1 CDS Dd1591_0040 NC_012912.1 44513 45073 R KEGG: eca:ECA0082 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I complement(44513..45073) Dickeya zeae Ech1591 8118985 YP_003002413.1 CDS Dd1591_0041 NC_012912.1 45311 46117 D PFAM: protein of unknown function DUF81; KEGG: eca:ECA0083 hypothetical protein; hypothetical protein 45311..46117 Dickeya zeae Ech1591 8118986 YP_003002414.1 CDS glyQ NC_012912.1 46262 47176 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 46262..47176 Dickeya zeae Ech1591 8118987 YP_003002415.1 CDS glyS NC_012912.1 47186 49270 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 47186..49270 Dickeya zeae Ech1591 8118988 YP_003002416.1 CDS Dd1591_0044 NC_012912.1 49378 50379 R KEGG: par:Psyc_1209 hypothetical protein; hypothetical protein complement(49378..50379) Dickeya zeae Ech1591 8118989 YP_003002417.1 CDS Dd1591_0045 NC_012912.1 50811 54404 R KEGG: cja:CJA_2723 UreA amidolyase homolog; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; urea carboxylase complement(50811..54404) Dickeya zeae Ech1591 8118990 YP_003002418.1 CDS Dd1591_0046 NC_012912.1 54504 55139 R TIGRFAM: urea carboxylase-associated protein 1; KEGG: abo:ABO_1891 hypothetical protein; urea carboxylase-associated protein 1 complement(54504..55139) Dickeya zeae Ech1591 8118991 YP_003002419.1 CDS Dd1591_0047 NC_012912.1 55142 55861 R TIGRFAM: urea carboxylase-associated protein 2; KEGG: sde:Sde_1125 5'-3' exonuclease; urea carboxylase-associated protein 2 complement(55142..55861) Dickeya zeae Ech1591 8118992 YP_003002420.1 CDS Dd1591_0048 NC_012912.1 55879 56658 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_3976 ABC transporter related; ABC transporter complement(55879..56658) Dickeya zeae Ech1591 8118993 YP_003002421.1 CDS Dd1591_0049 NC_012912.1 56686 57498 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cja:CJA_2719 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component complement(56686..57498) Dickeya zeae Ech1591 8118994 YP_003002422.1 CDS Dd1591_0050 NC_012912.1 57515 58570 R TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; KEGG: cja:CJA_2718 ABC transporter, periplasmic substrate-binding protein; ABC transporter substrate-binding protein complement(57515..58570) Dickeya zeae Ech1591 8118995 YP_003002423.1 CDS Dd1591_0051 NC_012912.1 59268 59978 D KEGG: eca:ECA0086 hypothetical protein; hypothetical protein 59268..59978 Dickeya zeae Ech1591 8118996 YP_003002424.1 CDS Dd1591_0052 NC_012912.1 60459 62366 D TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA0087 PTS system, mannitol-specific IIABC component; PTS system mannitol-specific transporter subunit IIC 60459..62366 Dickeya zeae Ech1591 8118997 YP_003002425.1 CDS Dd1591_0053 NC_012912.1 62439 63590 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eca:ECA0088 mannitol-1-phosphate 5-dehydrogenase; mannitol-1-phosphate 5-dehydrogenase 62439..63590 Dickeya zeae Ech1591 8118998 YP_003002426.1 CDS mtlR NC_012912.1 63676 64281 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 63676..64281 Dickeya zeae Ech1591 8118999 YP_003002427.1 CDS Dd1591_0055 NC_012912.1 64373 66259 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA0091 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(64373..66259) Dickeya zeae Ech1591 8119000 YP_003002428.1 CDS Dd1591_0056 NC_012912.1 66717 67343 R PFAM: manganese and iron superoxide dismutase; KEGG: eca:ECA0092 superoxide dismutase; Superoxide dismutase complement(66717..67343) Dickeya zeae Ech1591 8119001 YP_003002429.1 CDS Dd1591_0057 NC_012912.1 67614 68432 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(67614..68432) Dickeya zeae Ech1591 8119002 YP_003002430.1 CDS Dd1591_0058 NC_012912.1 68798 70333 D PFAM: Aldehyde Dehydrogenase; KEGG: eca:ECA0094 aldehyde dehydrogenase B; aldehyde dehydrogenase (NAD(+)) 68798..70333 Dickeya zeae Ech1591 8119003 YP_003002431.1 CDS Dd1591_0059 NC_012912.1 70585 72045 R TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: eca:ECA0096 xylulose kinase; xylulokinase complement(70585..72045) Dickeya zeae Ech1591 8119004 YP_003002432.1 CDS Dd1591_0060 NC_012912.1 72167 73486 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(72167..73486) Dickeya zeae Ech1591 8119005 YP_003002433.1 CDS xylF NC_012912.1 73978 74973 D periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; D-xylose transporter subunit XylF 73978..74973 Dickeya zeae Ech1591 8119006 YP_003002434.1 CDS Dd1591_0062 NC_012912.1 75057 76598 D with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit 75057..76598 Dickeya zeae Ech1591 8119007 YP_003002435.1 CDS Dd1591_0063 NC_012912.1 76576 77760 D PFAM: inner-membrane translocator; KEGG: eca:ECA0100 xylose transport system permease; inner-membrane translocator 76576..77760 Dickeya zeae Ech1591 8119008 YP_003002436.1 CDS Dd1591_0064 NC_012912.1 77949 79178 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA0101 xylose operon regulatory protein; AraC family transcriptional regulator 77949..79178 Dickeya zeae Ech1591 8119009 YP_003002437.1 CDS Dd1591_0065 NC_012912.1 79299 79874 R PFAM: ThiJ/PfpI domain protein; KEGG: eca:ECA0102 hypothetical protein; ThiJ/PfpI domain-containing protein complement(79299..79874) Dickeya zeae Ech1591 8119010 YP_003002438.1 CDS Dd1591_0066 NC_012912.1 80132 80410 R PFAM: protein of unknown function DUF156; KEGG: asa:ASA_0625 hypothetical protein; hypothetical protein complement(80132..80410) Dickeya zeae Ech1591 8119011 YP_003002439.1 CDS Dd1591_0067 NC_012912.1 80510 81412 D membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 80510..81412 Dickeya zeae Ech1591 8119012 YP_003002440.1 CDS Dd1591_0068 NC_012912.1 81706 83055 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 81706..83055 Dickeya zeae Ech1591 8119013 YP_003002441.1 CDS Dd1591_0069 NC_012912.1 83151 83651 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmn:BMA10247_0906 MarR family transcriptional regulator; MarR family transcriptional regulator complement(83151..83651) Dickeya zeae Ech1591 8119014 YP_003002442.1 CDS Dd1591_0070 NC_012912.1 84008 84874 D TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: ecm:EcSMS35_A0154 drug/metabolite transporter; carboxylate/amino acid/amine transporter 84008..84874 Dickeya zeae Ech1591 8119015 YP_003002443.1 CDS Dd1591_0071 NC_012912.1 85294 86244 D PFAM: Indigoidine synthase A family protein; KEGG: plu:plu2187 hypothetical protein; Indigoidine synthase A family protein 85294..86244 Dickeya zeae Ech1591 8119016 YP_003002444.1 CDS Dd1591_0072 NC_012912.1 86256 86948 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: plu:plu2182 hypothetical protein; HAD-superfamily hydrolase 86256..86948 Dickeya zeae Ech1591 8119017 YP_003002445.1 CDS Dd1591_0073 NC_012912.1 87246 91565 D TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: plu:plu2186 hypothetical protein; amino acid adenylation domain-containing protein 87246..91565 Dickeya zeae Ech1591 8119018 YP_003002446.1 CDS Dd1591_0074 NC_012912.1 91841 92845 D PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: plu:plu0753 hypothetical protein; 3-oxoacyl-ACP synthase III 91841..92845 Dickeya zeae Ech1591 8119019 YP_003002447.1 CDS Dd1591_0075 NC_012912.1 92859 93125 D hypothetical protein 92859..93125 Dickeya zeae Ech1591 8119020 YP_003002448.1 CDS Dd1591_0076 NC_012912.1 93115 93768 D hypothetical protein 93115..93768 Dickeya zeae Ech1591 8117027 YP_003002449.1 CDS Dd1591_0077 NC_012912.1 93787 95145 D KEGG: pfo:Pfl01_3541 multi anti extrusion protein MatE; Na+-driven multidrug efflux pump-like protein 93787..95145 Dickeya zeae Ech1591 8117028 YP_003002450.1 CDS Dd1591_0078 NC_012912.1 95132 96223 D KEGG: pfl:PFL_0267 hypothetical protein; hypothetical protein 95132..96223 Dickeya zeae Ech1591 8117029 YP_003002451.1 CDS Dd1591_0079 NC_012912.1 96288 96851 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dvl:Dvul_2703 transcription activator, effector binding; AraC family transcriptional regulator complement(96288..96851) Dickeya zeae Ech1591 8117030 YP_003002452.1 CDS Dd1591_0080 NC_012912.1 97467 98174 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_2119 ABC transporter, ATP-binding protein; ABC transporter 97467..98174 Dickeya zeae Ech1591 8117031 YP_003002453.1 CDS Dd1591_0081 NC_012912.1 98179 100611 D PFAM: protein of unknown function DUF214; KEGG: cps:CPS_2120 putative ABC transporter, permease protein; hypothetical protein 98179..100611 Dickeya zeae Ech1591 8117032 YP_003002454.1 CDS Dd1591_0082 NC_012912.1 100793 102193 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: cps:CPS_2121 sigma-54 dependent DNA-binding response regulator; two component, sigma54 specific, transcriptional regulator, Fis family 100793..102193 Dickeya zeae Ech1591 8117033 YP_003002455.1 CDS Dd1591_0083 NC_012912.1 102225 103505 D PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: cps:CPS_2122 sensor histidine kinase; PAS/PAC sensor signal transduction histidine kinase 102225..103505 Dickeya zeae Ech1591 8117034 YP_003002456.1 CDS Dd1591_0084 NC_012912.1 103624 104211 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: cbc:CbuK_0411 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 103624..104211 Dickeya zeae Ech1591 8117035 YP_003002457.1 CDS Dd1591_0085 NC_012912.1 104222 104869 R hypothetical protein complement(104222..104869) Dickeya zeae Ech1591 8117036 YP_003002458.1 CDS Dd1591_0086 NC_012912.1 105152 106102 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: plu:plu0753 hypothetical protein; 3-oxoacyl-ACP synthase III complement(105152..106102) Dickeya zeae Ech1591 8117037 YP_003002459.1 CDS Dd1591_0087 NC_012912.1 106102 106959 R hypothetical protein complement(106102..106959) Dickeya zeae Ech1591 8117038 YP_003002460.1 CDS Dd1591_0088 NC_012912.1 106943 108079 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: plu:plu0762 hypothetical protein; acyl-CoA dehydrogenase domain-containing protein complement(106943..108079) Dickeya zeae Ech1591 8117039 YP_003002461.1 CDS Dd1591_0089 NC_012912.1 108180 109103 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: plu:plu0753 hypothetical protein; 3-oxoacyl-ACP synthase III complement(108180..109103) Dickeya zeae Ech1591 8117040 YP_003002462.1 CDS Dd1591_0090 NC_012912.1 109174 109704 R hypothetical protein complement(109174..109704) Dickeya zeae Ech1591 8117041 YP_003002463.1 CDS Dd1591_0091 NC_012912.1 109706 110839 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: plu:plu0762 hypothetical protein; acyl-CoA dehydrogenase domain-containing protein complement(109706..110839) Dickeya zeae Ech1591 8117042 YP_003002464.1 CDS Dd1591_0092 NC_012912.1 110836 111267 R KEGG: pst:PSPTO_4711 coronamic acid synthetase CmaC; hypothetical protein complement(110836..111267) Dickeya zeae Ech1591 8117043 YP_003002465.1 CDS Dd1591_0093 NC_012912.1 111349 112881 R PFAM: AMP-dependent synthetase and ligase; KEGG: baa:BA_1915 AMP-binding enzyme; AMP-dependent synthetase and ligase complement(111349..112881) Dickeya zeae Ech1591 8117044 YP_003002466.1 CDS Dd1591_0094 NC_012912.1 112862 114421 R PFAM: AMP-dependent synthetase and ligase; KEGG: bsu:BSU38500 D-alanine--D-alanyl carrier protein ligase; AMP-dependent synthetase and ligase complement(112862..114421) Dickeya zeae Ech1591 8117045 YP_003002467.1 CDS Dd1591_0095 NC_012912.1 114418 114726 R hypothetical protein complement(114418..114726) Dickeya zeae Ech1591 8117046 YP_003002468.1 CDS Dd1591_0096 NC_012912.1 114732 116315 R PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mll6742 long chain acyl-CoA synthetase; AMP-dependent synthetase and ligase complement(114732..116315) Dickeya zeae Ech1591 8117047 YP_003002469.1 CDS Dd1591_0097 NC_012912.1 116327 117247 R hypothetical protein complement(116327..117247) Dickeya zeae Ech1591 8117048 YP_003002470.1 CDS Dd1591_0098 NC_012912.1 117244 118566 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mpo:Mpop_3620 Orn/DAP/Arg decarboxylase 2; Orn/DAP/Arg decarboxylase 2 complement(117244..118566) Dickeya zeae Ech1591 8117049 YP_003002471.1 CDS Dd1591_0099 NC_012912.1 118559 118870 R hypothetical protein complement(118559..118870) Dickeya zeae Ech1591 8117050 YP_003002472.1 CDS Dd1591_0100 NC_012912.1 119648 120400 D PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: eca:ECA1561 quorum-sensing transcriptional regulator; LuxR family transcriptional regulator 119648..120400 Dickeya zeae Ech1591 8117051 YP_003002473.1 CDS Dd1591_0101 NC_012912.1 120366 121004 R PFAM: autoinducer synthesis protein; KEGG: eca:ECA0105 N-acylhomoserine lactone synthesis protein; Acyl-homoserine-lactone synthase complement(120366..121004) Dickeya zeae Ech1591 8117052 YP_003002474.1 CDS Dd1591_0102 NC_012912.1 121713 121958 D PFAM: protein of unknown function DUF1471; KEGG: elf:LF82_0232 UPF0379 protein YcfR; hypothetical protein 121713..121958 Dickeya zeae Ech1591 8117053 YP_003002475.1 CDS Dd1591_0103 NC_012912.1 122258 123028 R TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: eca:ECA4272 triosephosphate isomerase; triosephosphate isomerase complement(122258..123028) Dickeya zeae Ech1591 8117054 YP_003002476.1 CDS Dd1591_0104 NC_012912.1 123170 123796 R PFAM: protein of unknown function DUF1454; KEGG: eca:ECA4271 hypothetical protein; hypothetical protein complement(123170..123796) Dickeya zeae Ech1591 8117055 YP_003002477.1 CDS Dd1591_0105 NC_012912.1 123909 124334 D PFAM: protein of unknown function DUF805; KEGG: eca:ECA4270 hypothetical protein; hypothetical protein 123909..124334 Dickeya zeae Ech1591 8117056 YP_003002478.1 CDS Dd1591_0106 NC_012912.1 124348 125094 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: esa:ESA_03881 ferredoxin-NADP reductase; ferredoxin-NADP reductase complement(124348..125094) Dickeya zeae Ech1591 8117057 YP_003002479.1 CDS glpX NC_012912.1 125203 126213 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(125203..126213) Dickeya zeae Ech1591 8117058 YP_003002480.1 CDS Dd1591_0108 NC_012912.1 126345 127856 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: eca:ECA4267 glycerol kinase; glycerol kinase complement(126345..127856) Dickeya zeae Ech1591 8117059 YP_003002481.1 CDS Dd1591_0109 NC_012912.1 127884 128735 R TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: eca:ECA4266 glycerol uptake facilitator protein; MIP family channel protein complement(127884..128735) Dickeya zeae Ech1591 8117060 YP_003002482.1 CDS Dd1591_0110 NC_012912.1 129345 129587 D PFAM: protein of unknown function DUF904; KEGG: eca:ECA4265 hypothetical protein; hypothetical protein 129345..129587 Dickeya zeae Ech1591 8117061 YP_003002483.1 CDS Dd1591_0111 NC_012912.1 129652 130137 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(129652..130137) Dickeya zeae Ech1591 8117062 YP_003002484.1 CDS Dd1591_0112 NC_012912.1 130286 131203 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(130286..131203) Dickeya zeae Ech1591 8117063 YP_003002485.1 CDS Dd1591_0113 NC_012912.1 131359 132690 R KEGG: eca:ECA4262 ATP-dependent protease ATP-binding subunit; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU complement(131359..132690) Dickeya zeae Ech1591 8117064 YP_003002486.1 CDS Dd1591_0114 NC_012912.1 132701 133231 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(132701..133231) Dickeya zeae Ech1591 8117065 YP_003002487.1 CDS Dd1591_0115 NC_012912.1 133317 134156 R TIGRFAM: cell division protein FtsN; PFAM: Sporulation domain protein; KEGG: eca:ECA4260 cell division protein FtsN; cell division protein FtsN complement(133317..134156) Dickeya zeae Ech1591 8117066 YP_003002488.1 CDS Dd1591_0116 NC_012912.1 134307 135377 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR complement(134307..135377) Dickeya zeae Ech1591 8117067 YP_003002489.1 CDS Dd1591_0117 NC_012912.1 135682 137880 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(135682..137880) Dickeya zeae Ech1591 8117068 YP_003002490.1 CDS Dd1591_0118 NC_012912.1 138156 138371 D TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: stm:STM4096 50S ribosomal protein L31; 50S ribosomal protein L31 138156..138371 Dickeya zeae Ech1591 8117069 YP_003002491.1 CDS Dd1591_0119 NC_012912.1 138486 138803 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(138486..138803) Dickeya zeae Ech1591 8117070 YP_003002492.1 CDS Dd1591_0120 NC_012912.1 138992 140152 D KEGG: eca:ECA4252 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine (thiol)-lyase 138992..140152 Dickeya zeae Ech1591 8117071 YP_003002493.1 CDS metL NC_012912.1 140155 142590 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 140155..142590 Dickeya zeae Ech1591 8117072 YP_003002494.1 CDS Dd1591_0122 NC_012912.1 142761 143684 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_B0832 putative oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein complement(142761..143684) Dickeya zeae Ech1591 8117073 YP_003002495.1 CDS Dd1591_0123 NC_012912.1 143894 144568 R PFAM: regulatory protein TetR; KEGG: ara:Arad_2384 transcriptional regulator protein; TetR family transcriptional regulator complement(143894..144568) Dickeya zeae Ech1591 8117074 YP_003002496.1 CDS Dd1591_0124 NC_012912.1 144635 144739 D hypothetical protein 144635..144739 Dickeya zeae Ech1591 8117075 YP_003002497.1 CDS metF NC_012912.1 144961 145857 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 144961..145857 Dickeya zeae Ech1591 8117076 YP_003002498.1 CDS Dd1591_0126 NC_012912.1 145981 146712 R TIGRFAM: glutaredoxin-family domain protein; PFAM: Redoxin domain protein; glutaredoxin; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: yen:YE0132 putative peroxiredoxin/glutaredoxin family protein; glutaredoxin-family domain-containing protein complement(145981..146712) Dickeya zeae Ech1591 8117077 YP_003002499.1 CDS Dd1591_0127 NC_012912.1 146874 147791 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 146874..147791 Dickeya zeae Ech1591 8117078 YP_003002500.1 CDS Dd1591_0128 NC_012912.1 147876 149282 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(147876..149282) Dickeya zeae Ech1591 8117079 YP_003002501.1 CDS Dd1591_0129 NC_012912.1 149465 150121 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 149465..150121 Dickeya zeae Ech1591 8117080 YP_003002502.1 CDS Dd1591_0130 NC_012912.1 150136 150510 D PFAM: protein of unknown function DUF1422; KEGG: eca:ECA4240 hypothetical protein; hypothetical protein 150136..150510 Dickeya zeae Ech1591 8117081 YP_003002503.1 CDS Dd1591_0131 NC_012912.1 150523 151626 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(150523..151626) Dickeya zeae Ech1591 8117082 YP_003002504.1 CDS btuB NC_012912.1 152049 153944 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 152049..153944 Dickeya zeae Ech1591 8117083 YP_003002505.1 CDS Dd1591_0133 NC_012912.1 153889 154761 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 153889..154761 Dickeya zeae Ech1591 8117084 YP_003002506.1 CDS Dd1591_0134 NC_012912.1 160792 161619 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR complement(160792..161619) Dickeya zeae Ech1591 8117092 YP_003002507.1 CDS Dd1591_0135 NC_012912.1 161740 162078 D PFAM: protein of unknown function DUF413; KEGG: eca:ECA4231 hypothetical protein; hypothetical protein 161740..162078 Dickeya zeae Ech1591 8117093 YP_003002508.1 CDS Dd1591_0136 NC_012912.1 162141 163667 R KEGG: eca:ECA4230 magnesium-chelatase; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(162141..163667) Dickeya zeae Ech1591 8117094 YP_003002509.1 CDS Dd1591_0137 NC_012912.1 164014 165225 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: spe:Spro_4761 major facilitator transporter; major facilitator superfamily protein 164014..165225 Dickeya zeae Ech1591 8117095 YP_003002510.1 CDS Dd1591_0138 NC_012912.1 165607 167253 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 165607..167253 Dickeya zeae Ech1591 8117096 YP_003002511.1 CDS ilvM NC_012912.1 167307 167564 D KEGG: eca:ECA4228 acetolactate synthase 2 regulatory subunit; acetolactate synthase 2 regulatory subunit 167307..167564 Dickeya zeae Ech1591 8117097 YP_003002512.1 CDS Dd1591_0140 NC_012912.1 167588 168514 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 167588..168514 Dickeya zeae Ech1591 8117098 YP_003002513.1 CDS Dd1591_0141 NC_012912.1 168588 170438 D KEGG: ect:ECIAI39_3015 dihydroxyacid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 168588..170438 Dickeya zeae Ech1591 8117099 YP_003002514.1 CDS Dd1591_0142 NC_012912.1 170444 171988 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 170444..171988 Dickeya zeae Ech1591 8117100 YP_003002515.1 CDS Dd1591_0143 NC_012912.1 172097 172837 D KEGG: eca:ECA4224 hypothetical protein; hypothetical protein 172097..172837 Dickeya zeae Ech1591 8117101 YP_003002516.1 CDS Dd1591_0144 NC_012912.1 172841 173605 R KEGG: eca:ECA4223 hypothetical protein; hypothetical protein complement(172841..173605) Dickeya zeae Ech1591 8117102 YP_003002517.1 CDS Dd1591_0145 NC_012912.1 173605 174492 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(173605..174492) Dickeya zeae Ech1591 8117103 YP_003002518.1 CDS Dd1591_0146 NC_012912.1 174662 176140 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 174662..176140 Dickeya zeae Ech1591 8117104 YP_003002519.1 CDS Dd1591_0147 NC_012912.1 176232 176330 D hypothetical protein 176232..176330 Dickeya zeae Ech1591 8117105 YP_003002520.1 CDS Dd1591_0148 NC_012912.1 176368 177867 R TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: eca:ECA4218 sodium/proline symporter; sodium/proline symporter complement(176368..177867) Dickeya zeae Ech1591 8117106 YP_003002521.1 CDS Dd1591_0149 NC_012912.1 178228 182205 D TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: spe:Spro_2931 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 178228..182205 Dickeya zeae Ech1591 8117107 YP_003002522.1 CDS Dd1591_0150 NC_012912.1 182640 182921 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: eca:ECA4216 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase complement(182640..182921) Dickeya zeae Ech1591 8117108 YP_003002523.1 CDS Dd1591_0151 NC_012912.1 183106 185130 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 183106..185130 Dickeya zeae Ech1591 8117109 YP_003002524.1 CDS Dd1591_0152 NC_012912.1 185183 186991 R PFAM: glycoside hydrolase family 28; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: yen:YE0164 exo-poly-alpha-D-galacturonosidase precursor; glycoside hydrolase family 28 complement(185183..186991) Dickeya zeae Ech1591 8117110 YP_003002525.1 CDS Dd1591_0153 NC_012912.1 187322 189136 R PFAM: glycoside hydrolase family 28; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; Parallel beta-helix repeat; KEGG: yen:YE0164 exo-poly-alpha-D-galacturonosidase precursor; glycoside hydrolase family 28 complement(187322..189136) Dickeya zeae Ech1591 8117111 YP_003002526.1 CDS Dd1591_0154 NC_012912.1 189461 190963 R catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase complement(189461..190963) Dickeya zeae Ech1591 8117112 YP_003002527.1 CDS Dd1591_0155 NC_012912.1 190971 192257 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(190971..192257) Dickeya zeae Ech1591 8117113 YP_003002528.1 CDS Dd1591_0156 NC_012912.1 192377 192703 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: eta:ETA_01950 thioredoxin 1; thioredoxin 192377..192703 Dickeya zeae Ech1591 8117114 YP_003002529.1 CDS Dd1591_0157 NC_012912.1 193133 194392 D KEGG: cko:CKO_00124 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Ribonuclease B OB region domain; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; AAA ATPase; transcription termination factor Rho 193133..194392 Dickeya zeae Ech1591 8117115 YP_003002530.1 CDS Dd1591_0158 NC_012912.1 194631 195692 D TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase family 4; KEGG: eca:ECA4210 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 194631..195692 Dickeya zeae Ech1591 8117116 YP_003002531.1 CDS Dd1591_0159 NC_012912.1 195714 196739 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 195714..196739 Dickeya zeae Ech1591 8117117 YP_003002532.1 CDS Dd1591_0160 NC_012912.1 196820 197950 D KEGG: spe:Spro_0163 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 196820..197950 Dickeya zeae Ech1591 8117118 YP_003002533.1 CDS Dd1591_0161 NC_012912.1 197947 199209 D TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: yps:YPTB0171 UDP-N-acetyl-D-mannosamine dehydrogenase; nucleotide sugar dehydrogenase 197947..199209 Dickeya zeae Ech1591 8117119 YP_003002534.1 CDS Dd1591_0162 NC_012912.1 199257 199973 D TIGRFAM: TDP-D-fucosamine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA4205 TDP-fucosamine acetyltransferase; TDP-fucosamine acetyltransferase 199257..199973 Dickeya zeae Ech1591 8117120 YP_003002535.1 CDS Dd1591_0163 NC_012912.1 200008 201138 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 200008..201138 Dickeya zeae Ech1591 8117121 YP_003002536.1 CDS Dd1591_0164 NC_012912.1 201138 202388 D PFAM: polysaccharide biosynthesis protein; KEGG: eca:ECA4203 entero common antigen biosynthesis protein; polysaccharide biosynthesis protein 201138..202388 Dickeya zeae Ech1591 8117122 YP_003002537.1 CDS Dd1591_0165 NC_012912.1 202385 203470 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 202385..203470 Dickeya zeae Ech1591 8117123 YP_003002538.1 CDS Dd1591_0166 NC_012912.1 203463 204791 D enterobacterial common antigen polymerase; putative common antigen polymerase 203463..204791 Dickeya zeae Ech1591 8117124 YP_003002539.1 CDS Dd1591_0167 NC_012912.1 204788 205522 D KEGG: eca:ECA4200 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; putative UDP-N-acetyl-D-mannosaminuronic acid transferase 204788..205522 Dickeya zeae Ech1591 8117125 YP_003002540.1 CDS Dd1591_0168 NC_012912.1 205810 207204 D uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; putative transport protein YifK 205810..207204 Dickeya zeae Ech1591 8117126 YP_003002541.1 CDS Dd1591_0169 NC_012912.1 207977 208315 D KEGG: aha:AHA_0731 steroid delta-isomerase domain-containing protein; steroid delta-isomerase domain-containing protein 207977..208315 Dickeya zeae Ech1591 8117131 YP_003002542.1 CDS Dd1591_0170 NC_012912.1 208574 209938 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 208574..209938 Dickeya zeae Ech1591 8117132 YP_003002543.1 CDS Dd1591_0171 NC_012912.1 209950 210474 D PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA4196 putative acetyltransferase; GCN5-related N-acetyltransferase 209950..210474 Dickeya zeae Ech1591 8117133 YP_003002544.1 CDS Dd1591_0172 NC_012912.1 210488 211267 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA4195 putative amino-acid ABC transporter binding protein; extracellular solute-binding protein family 3 210488..211267 Dickeya zeae Ech1591 8117134 YP_003002545.1 CDS Dd1591_0173 NC_012912.1 211328 212011 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4194 amino-acid ABC transporter permease protein; polar amino acid ABC transporter permease 211328..212011 Dickeya zeae Ech1591 8117135 YP_003002546.1 CDS Dd1591_0174 NC_012912.1 212021 212782 D PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: eca:ECA4193 putative amino-acid ABC transporter ATP-binding protein; ABC transporter 212021..212782 Dickeya zeae Ech1591 8117136 YP_003002547.1 CDS Dd1591_0175 NC_012912.1 212862 214022 D KEGG: eca:ECA4192 putative peptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 212862..214022 Dickeya zeae Ech1591 8117137 YP_003002548.1 CDS Dd1591_0176 NC_012912.1 214646 215842 R KEGG: eca:ECA4191 putative protoheme IX biogenesis protein; TIGRFAM: HemY protein; PFAM: HemY domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; putative protoheme IX biogenesis protein complement(214646..215842) Dickeya zeae Ech1591 8117138 YP_003002549.1 CDS Dd1591_0177 NC_012912.1 215845 216978 R PFAM: protein of unknown function DUF513 hemX; KEGG: eca:ECA4190 putative uroporphyrinogen III C-methyltransferase; putative uroporphyrinogen III C-methyltransferase complement(215845..216978) Dickeya zeae Ech1591 8117139 YP_003002550.1 CDS hemD NC_012912.1 217067 217807 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(217067..217807) Dickeya zeae Ech1591 8117140 YP_003002551.1 CDS Dd1591_0179 NC_012912.1 217804 218772 R KEGG: ent:Ent638_3987 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase complement(217804..218772) Dickeya zeae Ech1591 8117141 YP_003002552.1 CDS cyaA NC_012912.1 219070 221628 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 219070..221628 Dickeya zeae Ech1591 8117142 YP_003002553.1 CDS Dd1591_0181 NC_012912.1 221686 222006 R TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: eca:ECA4185 frataxin-like protein; iron donor protein CyaY complement(221686..222006) Dickeya zeae Ech1591 8117143 YP_003002554.1 CDS Dd1591_0182 NC_012912.1 222066 222248 D KEGG: eca:ECA4184 putative lipoprotein; putative lipoprotein 222066..222248 Dickeya zeae Ech1591 8117144 YP_003002555.1 CDS dapF NC_012912.1 222337 223161 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 222337..223161 Dickeya zeae Ech1591 8117145 YP_003002556.1 CDS Dd1591_0184 NC_012912.1 223158 223859 D PFAM: protein of unknown function DUF484; KEGG: eca:ECA4182 hypothetical protein; hypothetical protein 223158..223859 Dickeya zeae Ech1591 8117146 YP_003002557.1 CDS xerC NC_012912.1 223856 224764 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 223856..224764 Dickeya zeae Ech1591 8117147 YP_003002558.1 CDS Dd1591_0186 NC_012912.1 224764 225480 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ecg:E2348C_4112 predicted hydrolase; HAD-superfamily hydrolase 224764..225480 Dickeya zeae Ech1591 8117148 YP_003002559.1 CDS uvrD NC_012912.1 225567 227729 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 225567..227729 Dickeya zeae Ech1591 8117149 YP_003002560.1 CDS Dd1591_0188 NC_012912.1 228113 229063 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 228113..229063 Dickeya zeae Ech1591 8117150 YP_003002561.1 CDS Dd1591_0189 NC_012912.1 229239 230297 D TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: eca:ECA4176 hypothetical protein; membrane protein AbrB duplication 229239..230297 Dickeya zeae Ech1591 8117151 YP_003002562.1 CDS Dd1591_0190 NC_012912.1 230256 231176 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA4175 hypothetical protein; RarD protein, DMT superfamily transporter complement(230256..231176) Dickeya zeae Ech1591 8117152 YP_003002563.1 CDS Dd1591_0191 NC_012912.1 231278 231748 R PFAM: thioesterase superfamily protein; KEGG: eca:ECA4174 hypothetical protein; hypothetical protein complement(231278..231748) Dickeya zeae Ech1591 8117153 YP_003002564.1 CDS Dd1591_0192 NC_012912.1 231993 232862 D catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 231993..232862 Dickeya zeae Ech1591 8117154 YP_003002565.1 CDS Dd1591_0193 NC_012912.1 233061 234860 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 233061..234860 Dickeya zeae Ech1591 8117155 YP_003002566.1 CDS Dd1591_0194 NC_012912.1 234922 235545 D TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA4171 threonine efflux system; threonine efflux system 234922..235545 Dickeya zeae Ech1591 8117156 YP_003002567.1 CDS rhtB NC_012912.1 235635 236255 R TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA4170 homoserine/homoserine lactone efflux protein; homoserine/homoserine lactone efflux protein complement(235635..236255) Dickeya zeae Ech1591 8117157 YP_003002568.1 CDS Dd1591_0196 NC_012912.1 236367 237359 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 236367..237359 Dickeya zeae Ech1591 8117158 YP_003002569.1 CDS Dd1591_0197 NC_012912.1 237412 238209 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: eca:ECA4168 putative sugar phosphatase; Cof-like hydrolase 237412..238209 Dickeya zeae Ech1591 8117159 YP_003002570.1 CDS glpQ NC_012912.1 238200 239282 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(238200..239282) Dickeya zeae Ech1591 8117160 YP_003002571.1 CDS glpT NC_012912.1 239427 240776 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(239427..240776) Dickeya zeae Ech1591 8117161 YP_003002572.1 CDS glpA NC_012912.1 241076 242719 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 241076..242719 Dickeya zeae Ech1591 8117162 YP_003002573.1 CDS Dd1591_0201 NC_012912.1 242709 243959 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 242709..243959 Dickeya zeae Ech1591 8117163 YP_003002574.1 CDS glpC NC_012912.1 243956 245158 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 243956..245158 Dickeya zeae Ech1591 8117164 YP_003002575.1 CDS Dd1591_0203 NC_012912.1 245863 246561 D PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: eca:ECA4162 hypothetical protein; Pirin domain-containing protein 245863..246561 Dickeya zeae Ech1591 8117165 YP_003002576.1 CDS Dd1591_0204 NC_012912.1 246846 248171 D PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_05087 hypothetical protein; transposase IS4 family protein 246846..248171 Dickeya zeae Ech1591 8117166 YP_003002577.1 CDS Dd1591_0205 NC_012912.1 248278 249768 R KEGG: eca:ECA3946 hypothetical protein; hypothetical protein complement(248278..249768) Dickeya zeae Ech1591 8117167 YP_003002578.1 CDS Dd1591_0206 NC_012912.1 250617 251480 R PFAM: protein of unknown function DUF323; KEGG: plu:plu0187 CpmF protein involved in carbapenem resistance; hypothetical protein complement(250617..251480) Dickeya zeae Ech1591 8117168 YP_003002579.1 CDS Dd1591_0207 NC_012912.1 251489 252064 R KEGG: pmr:PMI1554 hypothetical protein; hypothetical protein complement(251489..252064) Dickeya zeae Ech1591 8117169 YP_003002580.1 CDS Dd1591_0208 NC_012912.1 252021 252608 R KEGG: plu:plu0880 CpmJ protein; CpmJ protein complement(252021..252608) Dickeya zeae Ech1591 8117170 YP_003002581.1 CDS Dd1591_0209 NC_012912.1 252644 252916 R PFAM: ferredoxin; KEGG: plu:plu0186 CpmE protein involved in carbapenem biosynthesis; ferredoxin complement(252644..252916) Dickeya zeae Ech1591 8117171 YP_003002582.1 CDS Dd1591_0210 NC_012912.1 252913 254043 R PFAM: Proline dehydrogenase; KEGG: plu:plu0185 CpmD protein involved in carbapenem biosynthesis; Proline dehydrogenase complement(252913..254043) Dickeya zeae Ech1591 8117172 YP_003002583.1 CDS Dd1591_0211 NC_012912.1 254154 254966 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: plu:plu0184 CpmC protein involved in carbapenem biosynthesis; Taurine catabolism dioxygenase TauD/TfdA complement(254154..254966) Dickeya zeae Ech1591 8117173 YP_003002584.1 CDS Dd1591_0212 NC_012912.1 254986 255738 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: plu:plu0183 CpmB protein involved in carbapenem biosynthesis; Enoyl-CoA hydratase/isomerase complement(254986..255738) Dickeya zeae Ech1591 8117174 YP_003002585.1 CDS Dd1591_0213 NC_012912.1 255742 257253 R PFAM: asparagine synthase; KEGG: plu:plu0182 CpmA protein involved in carbapenem biosynthesis; asparagine synthase complement(255742..257253) Dickeya zeae Ech1591 8117175 YP_003002586.1 CDS Dd1591_0214 NC_012912.1 257629 258473 D KEGG: plu:plu4519 IS427 family transposase; transposase and inactivated derivatives-like protein join(257629..257979,257979..258473) Dickeya zeae Ech1591 8117176 YP_003002587.1 CDS Dd1591_0215 NC_012912.1 258624 259622 D PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: esa:ESA_04301 hypothetical protein; LacI family transcriptional regulator 258624..259622 Dickeya zeae Ech1591 8117177 YP_003002588.1 CDS Dd1591_0216 NC_012912.1 259633 260151 R KEGG: eca:ECA1839 gluconokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; carbohydrate kinase, thermoresistant glucokinase family complement(259633..260151) Dickeya zeae Ech1591 8117178 YP_003002589.1 CDS Dd1591_0217 NC_012912.1 260399 261715 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: spe:Spro_4651 gluconate transporter; gluconate transporter 260399..261715 Dickeya zeae Ech1591 8117179 YP_003002590.1 CDS Dd1591_0218 NC_012912.1 261811 262404 R YhgN; Ec0197; hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate; seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group; shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP, dCTP, dGTP, and dTTP); putative dITP- and XTP- hydrolase complement(261811..262404) Dickeya zeae Ech1591 8117180 YP_003002591.1 CDS Dd1591_0219 NC_012912.1 262604 263704 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 262604..263704 Dickeya zeae Ech1591 8117181 YP_003002592.1 CDS Dd1591_0220 NC_012912.1 263936 264355 D PFAM: NikR nickel binding; CopG domain protein DNA-binding domain protein; KEGG: azo:azo3128 nickel responsive regulator; transcriptional regulator NikR, CopG family 263936..264355 Dickeya zeae Ech1591 8117182 YP_003002593.1 CDS Dd1591_0221 NC_012912.1 264877 265089 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: yen:YE3823 major cold shock protein; cold-shock DNA-binding domain-containing protein 264877..265089 Dickeya zeae Ech1591 8117183 YP_003002594.1 CDS Dd1591_0222 NC_012912.1 265269 266954 R PFAM: histidine kinase internal region; GAF domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; KEGG: eca:ECA4152 putative two-component system sensor kinase; signal transduction histidine kinase, LytS complement(265269..266954) Dickeya zeae Ech1591 8117184 YP_003002595.1 CDS Dd1591_0223 NC_012912.1 267334 269517 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 267334..269517 Dickeya zeae Ech1591 8117185 YP_003002596.1 CDS Dd1591_0224 NC_012912.1 269517 271487 D catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching enzyme 269517..271487 Dickeya zeae Ech1591 8117186 YP_003002597.1 CDS glgC NC_012912.1 271504 272790 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 271504..272790 Dickeya zeae Ech1591 8118547 YP_003002598.1 CDS glgA NC_012912.1 272870 274303 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 272870..274303 Dickeya zeae Ech1591 8118548 YP_003002599.1 CDS Dd1591_0227 NC_012912.1 274327 276774 D KEGG: eca:ECA4147 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 274327..276774 Dickeya zeae Ech1591 8118549 YP_003002600.1 CDS glpD NC_012912.1 277248 278747 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(277248..278747) Dickeya zeae Ech1591 8118550 YP_003002601.1 CDS Dd1591_0229 NC_012912.1 279088 279408 D KEGG: eca:ECA4139 thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Thiosulfate sulfurtransferase 279088..279408 Dickeya zeae Ech1591 8118551 YP_003002602.1 CDS Dd1591_0230 NC_012912.1 279584 280426 D protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 279584..280426 Dickeya zeae Ech1591 8118552 YP_003002603.1 CDS Dd1591_0231 NC_012912.1 280552 281310 D represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR 280552..281310 Dickeya zeae Ech1591 8118553 YP_003002604.1 CDS Dd1591_0232 NC_012912.1 281355 283772 D KEGG: eca:ECA4136 maltodextrin phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 281355..283772 Dickeya zeae Ech1591 8118554 YP_003002605.1 CDS malQ NC_012912.1 283785 285938 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 283785..285938 Dickeya zeae Ech1591 8118555 YP_003002606.1 CDS Dd1591_0234 NC_012912.1 286062 286637 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein complement(286062..286637) Dickeya zeae Ech1591 8118556 YP_003002607.1 CDS Dd1591_0235 NC_012912.1 286694 287413 R KEGG: spe:Spro_4633 gluconate periplasmic binding protein; gluconate periplasmic binding protein complement(286694..287413) Dickeya zeae Ech1591 8118557 YP_003002608.1 CDS Dd1591_0236 NC_012912.1 287492 288277 D KEGG: eca:ECA4132 putative biotin biosynthesis protein; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; bioH protein 287492..288277 Dickeya zeae Ech1591 8118558 YP_003002609.1 CDS Dd1591_0238 NC_012912.1 288612 289820 D PFAM: transposase mutator type; KEGG: yps:YPTB3311 putative transposase; transposase mutator type 288612..289820 Dickeya zeae Ech1591 8118560 YP_003002610.1 CDS Dd1591_0239 NC_012912.1 289854 290069 R PFAM: protein of unknown function DUF1493; KEGG: yps:YPTB1663 putative acyl carrier protein; hypothetical protein complement(289854..290069) Dickeya zeae Ech1591 8118561 YP_003002611.1 CDS Dd1591_0240 NC_012912.1 290310 292652 R PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: eca:ECA4122 putative RNA binding protein; RNA binding S1 domain-containing protein complement(290310..292652) Dickeya zeae Ech1591 8118562 YP_003002612.1 CDS Dd1591_0241 NC_012912.1 292821 294530 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: eca:ECA4119 putative acyltransferase; phospholipid/glycerol acyltransferase complement(292821..294530) Dickeya zeae Ech1591 8118563 YP_003002613.1 CDS Dd1591_0242 NC_012912.1 294685 296685 R PFAM: sulfatase; KEGG: asu:Asuc_0556 sulfatase; sulfatase complement(294685..296685) Dickeya zeae Ech1591 8118564 YP_003002614.1 CDS Dd1591_0243 NC_012912.1 296816 297298 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shm:Shewmr7_3890 transcription elongation factor GreB; transcription elongation factor GreB complement(296816..297298) Dickeya zeae Ech1591 8118565 YP_003002615.1 CDS ompR NC_012912.1 297569 298288 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 297569..298288 Dickeya zeae Ech1591 8118566 YP_003002616.1 CDS envZ NC_012912.1 298285 299697 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 298285..299697 Dickeya zeae Ech1591 8118567 YP_003002617.1 CDS Dd1591_0246 NC_012912.1 299812 301431 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(299812..301431) Dickeya zeae Ech1591 8118568 YP_003002618.1 CDS Dd1591_0247 NC_012912.1 301501 301746 D hypothetical protein 301501..301746 Dickeya zeae Ech1591 8118569 YP_003002619.1 CDS hslO NC_012912.1 301703 302575 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(301703..302575) Dickeya zeae Ech1591 8118570 YP_003002620.1 CDS Dd1591_0249 NC_012912.1 302601 303014 R PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: ses:SARI_04118 ribosome-associated heat shock protein HSP15; RNA-binding S4 domain-containing protein complement(302601..303014) Dickeya zeae Ech1591 8118571 YP_003002621.1 CDS Dd1591_0250 NC_012912.1 303011 303715 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: eca:ECA4103 putative hydrolase; HAD-superfamily hydrolase complement(303011..303715) Dickeya zeae Ech1591 8118572 YP_003002622.1 CDS Dd1591_0251 NC_012912.1 303835 305970 R PFAM: Intracellular growth attenuator IgaA; KEGG: eca:ECA4102 intracellular growth attenuator protein; Intracellular growth attenuator IgaA complement(303835..305970) Dickeya zeae Ech1591 8118573 YP_003002623.1 CDS nudE NC_012912.1 306393 306965 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 306393..306965 Dickeya zeae Ech1591 8118574 YP_003002624.1 CDS mrcA NC_012912.1 307119 309677 R bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase complement(307119..309677) Dickeya zeae Ech1591 8118575 YP_003002625.1 CDS Dd1591_0254 NC_012912.1 309772 309924 R hypothetical protein complement(309772..309924) Dickeya zeae Ech1591 8118576 YP_003002626.1 CDS Dd1591_0255 NC_012912.1 309927 310805 D KEGG: eca:ECA4098 hypothetical protein; hypothetical protein 309927..310805 Dickeya zeae Ech1591 8118577 YP_003002627.1 CDS Dd1591_0256 NC_012912.1 310799 311359 D PFAM: Fimbrial assembly family protein; KEGG: eca:ECA4097 hypothetical protein; Fimbrial assembly family protein 310799..311359 Dickeya zeae Ech1591 8118578 YP_003002628.1 CDS Dd1591_0257 NC_012912.1 311359 311910 D KEGG: eca:ECA4096 hypothetical protein; hypothetical protein 311359..311910 Dickeya zeae Ech1591 8118579 YP_003002629.1 CDS Dd1591_0258 NC_012912.1 311907 312266 D KEGG: eca:ECA4095 hypothetical protein; hypothetical protein 311907..312266 Dickeya zeae Ech1591 8118580 YP_003002630.1 CDS hofQ NC_012912.1 312270 313571 D outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; putative outer membrane porin HofQ 312270..313571 Dickeya zeae Ech1591 8118581 YP_003002631.1 CDS Dd1591_0260 NC_012912.1 314007 314576 D PFAM: shikimate kinase; KEGG: esa:ESA_04351 shikimate kinase I; Shikimate kinase 314007..314576 Dickeya zeae Ech1591 8118582 YP_003002632.1 CDS aroB NC_012912.1 314630 315715 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 314630..315715 Dickeya zeae Ech1591 8118583 YP_003002633.1 CDS Dd1591_0262 NC_012912.1 315850 316902 D PFAM: Sporulation domain protein; KEGG: eca:ECA4091 hypothetical protein; hypothetical protein 315850..316902 Dickeya zeae Ech1591 8118584 YP_003002634.1 CDS Dd1591_0263 NC_012912.1 316979 317806 D KEGG: eca:ECA4090 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 316979..317806 Dickeya zeae Ech1591 8118585 YP_003002635.1 CDS Dd1591_0264 NC_012912.1 318031 318708 D KEGG: eca:ECA4089 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 318031..318708 Dickeya zeae Ech1591 8118586 YP_003002636.1 CDS Dd1591_0265 NC_012912.1 318701 319399 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 318701..319399 Dickeya zeae Ech1591 8118587 YP_003002637.1 CDS Dd1591_0266 NC_012912.1 319401 320405 D KEGG: eca:ECA4087 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 319401..320405 Dickeya zeae Ech1591 8118588 YP_003002638.1 CDS Dd1591_0267 NC_012912.1 320703 321857 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA4077 putative mandelate racemase / muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 320703..321857 Dickeya zeae Ech1591 8118589 YP_003002639.1 CDS Dd1591_0268 NC_012912.1 322101 322676 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: eca:ECA4071 peptidyl-prolyl cis-trans isomerase A (rotamase A); peptidyl-prolyl cis-trans isomerase A (rotamase A) 322101..322676 Dickeya zeae Ech1591 8118590 YP_003002640.1 CDS Dd1591_0269 NC_012912.1 322884 324149 R KEGG: eca:ECA4070 pectate lyase; pectate lyase complement(322884..324149) Dickeya zeae Ech1591 8118591 YP_003002641.1 CDS Dd1591_0270 NC_012912.1 324317 325444 R PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: eca:ECA4069 pectate lyase III; pectate lyase/Amb allergen complement(324317..325444) Dickeya zeae Ech1591 8118592 YP_003002642.1 CDS Dd1591_0271 NC_012912.1 325913 327040 R PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: eca:ECA4069 pectate lyase III; pectate lyase/Amb allergen complement(325913..327040) Dickeya zeae Ech1591 8118593 YP_003002643.1 CDS Dd1591_0272 NC_012912.1 327498 328868 D KEGG: vvu:VV2_1425 glutamate decarboxylase; glutamate decarboxylase 327498..328868 Dickeya zeae Ech1591 8118594 YP_003002644.1 CDS Dd1591_0273 NC_012912.1 328870 329901 D KEGG: fph:Fphi_0374 hypothetical protein; hypothetical protein 328870..329901 Dickeya zeae Ech1591 8118595 YP_003002645.1 CDS Dd1591_0274 NC_012912.1 329898 331184 D KEGG: dal:Dalk_2018 PAS/PAC sensor hybrid histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism 329898..331184 Dickeya zeae Ech1591 8118596 YP_003002646.1 CDS Dd1591_0275 NC_012912.1 331181 332323 D PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_1856 putative cyanate permease; major facilitator superfamily protein 331181..332323 Dickeya zeae Ech1591 8118597 YP_003002647.1 CDS Dd1591_0276 NC_012912.1 332536 333162 D PFAM: glycoside hydrolase family 19; KEGG: pfl:PFL_3798 chitinase domain-containing protein; glycoside hydrolase family 19 332536..333162 Dickeya zeae Ech1591 8118598 YP_003002648.1 CDS Dd1591_0277 NC_012912.1 333771 335735 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: yen:YE2922 putative protease; peptidase S8/S53 subtilisin kexin sedolisin 333771..335735 Dickeya zeae Ech1591 8118599 YP_003002649.1 CDS Dd1591_0278 NC_012912.1 335842 335991 D hypothetical protein 335842..335991 Dickeya zeae Ech1591 8118600 YP_003002650.1 CDS Dd1591_0279 NC_012912.1 337294 338499 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: smt:Smal_2105 putative sigma54 specific transcriptional regulator; AraC family transcriptional regulator 337294..338499 Dickeya zeae Ech1591 8118601 YP_003002651.1 CDS Dd1591_0281 NC_012912.1 338942 339262 D PFAM: protein of unknown function DUF891; KEGG: esa:ESA_03838 hypothetical protein; hypothetical protein 338942..339262 Dickeya zeae Ech1591 8118603 YP_003002652.1 CDS Dd1591_0282 NC_012912.1 339252 339536 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu0900 hypothetical protein; XRE family transcriptional regulator 339252..339536 Dickeya zeae Ech1591 8118604 YP_003002653.1 CDS Dd1591_0284 NC_012912.1 339859 340434 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: yen:YE3958 para-aminobenzoate synthase component II; glutamine amidotransferase of anthranilate synthase 339859..340434 Dickeya zeae Ech1591 8118606 YP_003002654.1 CDS argD NC_012912.1 340537 341778 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 340537..341778 Dickeya zeae Ech1591 8118607 YP_003002655.1 CDS Dd1591_0286 NC_012912.1 341890 342663 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(341890..342663) Dickeya zeae Ech1591 8118608 YP_003002656.1 CDS Dd1591_0287 NC_012912.1 342761 343633 R L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase complement(342761..343633) Dickeya zeae Ech1591 8118609 YP_003002657.1 CDS Dd1591_0288 NC_012912.1 343716 344783 R KEGG: ppr:PBPRB0271 putative L-ascorbate 6-phosphate lactonase; putative L-ascorbate 6-phosphate lactonase complement(343716..344783) Dickeya zeae Ech1591 8118610 YP_003002658.1 CDS Dd1591_0289 NC_012912.1 345326 347071 D PFAM: putative sugar-specific permease SgaT/UlaA; phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: ppr:PBPRB0273 ascorbate-specific PTS system enzyme IIC/IIB; PTS system ascorbate-specific transporter subunits IICB 345326..347071 Dickeya zeae Ech1591 8118611 YP_003002659.1 CDS Dd1591_0290 NC_012912.1 347120 347596 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: vvy:VVA1605 PTS system, IIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN 347120..347596 Dickeya zeae Ech1591 8118612 YP_003002660.1 CDS araD NC_012912.1 347639 348331 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 347639..348331 Dickeya zeae Ech1591 8118613 YP_003002661.1 CDS ulaD NC_012912.1 348479 349123 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 348479..349123 Dickeya zeae Ech1591 8118614 YP_003002662.1 CDS Dd1591_0293 NC_012912.1 349223 349855 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(349223..349855) Dickeya zeae Ech1591 8118615 YP_003002663.1 CDS Dd1591_0294 NC_012912.1 350233 350640 D PFAM: OsmC family protein; KEGG: efe:EFER_3329 hypothetical protein; hypothetical protein 350233..350640 Dickeya zeae Ech1591 8118616 YP_003002664.1 CDS Dd1591_0295 NC_012912.1 350695 351564 R PFAM: phosphoribulokinase/uridine kinase; KEGG: eca:ECA4062 phosphoribulokinase; Phosphoribulokinase complement(350695..351564) Dickeya zeae Ech1591 8118617 YP_003002665.1 CDS Dd1591_0296 NC_012912.1 351722 351952 R PFAM: protein of unknown function UPF0270; KEGG: efe:EFER_3326 hypothetical protein; hypothetical protein complement(351722..351952) Dickeya zeae Ech1591 8118618 YP_003002666.1 CDS Dd1591_0297 NC_012912.1 351949 352944 R PFAM: alpha/beta hydrolase fold; KEGG: eca:ECA4060 putative hydrolase; putative hydrolase complement(351949..352944) Dickeya zeae Ech1591 8118619 YP_003002667.1 CDS Dd1591_0298 NC_012912.1 353063 353668 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA4059 hypothetical protein; lysine exporter protein LysE/YggA 353063..353668 Dickeya zeae Ech1591 8118620 YP_003002668.1 CDS Dd1591_0299 NC_012912.1 353740 355659 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4058 putative ABC transporter ATP-binding protein; putative ABC transporter ATP-binding protein complement(353740..355659) Dickeya zeae Ech1591 8118621 YP_003002669.1 CDS Dd1591_0300 NC_012912.1 355783 356334 D required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 355783..356334 Dickeya zeae Ech1591 8118622 YP_003002670.1 CDS Dd1591_0301 NC_012912.1 356337 358151 D involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 356337..358151 Dickeya zeae Ech1591 8118623 YP_003002671.1 CDS Dd1591_0302 NC_012912.1 358210 358404 D KEGG: eca:ECA4055 hypothetical protein; hypothetical protein 358210..358404 Dickeya zeae Ech1591 8118624 YP_003002672.1 CDS Dd1591_0303 NC_012912.1 358554 359132 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ent:Ent638_3766 FKBP-type peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase FKBP-type 358554..359132 Dickeya zeae Ech1591 8118625 YP_003002673.1 CDS Dd1591_0304 NC_012912.1 359224 360591 R TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: eta:ETA_25540 putative ethanolamin permease; ethanolamine transporter complement(359224..360591) Dickeya zeae Ech1591 8118626 YP_003002674.1 CDS Dd1591_0305 NC_012912.1 361020 362036 D PFAM: aminoglycoside phosphotransferase; KEGG: eta:ETA_25530 hypothetical protein; aminoglycoside phosphotransferase 361020..362036 Dickeya zeae Ech1591 8116867 YP_003002675.1 CDS Dd1591_0306 NC_012912.1 362187 363230 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eta:ETA_25520 AraC family transcriptional regulator; AraC family transcriptional regulator 362187..363230 Dickeya zeae Ech1591 8116868 YP_003002676.1 CDS Dd1591_0307 NC_012912.1 363240 363458 R PFAM: SlyX family protein; KEGG: eta:ETA_31750 host factor for lysis of phiX174 infection SlyX; SlyX family protein complement(363240..363458) Dickeya zeae Ech1591 8116869 YP_003002677.1 CDS Dd1591_0308 NC_012912.1 363671 364522 D rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 363671..364522 Dickeya zeae Ech1591 8116870 YP_003002678.1 CDS Dd1591_0309 NC_012912.1 364648 365805 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eca:ECA4045 sensor protein BasS/PmrB; sensor protein BasS/PmrB complement(364648..365805) Dickeya zeae Ech1591 8116871 YP_003002679.1 CDS Dd1591_0310 NC_012912.1 365802 366500 R response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR complement(365802..366500) Dickeya zeae Ech1591 8116872 YP_003002680.1 CDS Dd1591_0311 NC_012912.1 366497 368140 R with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; putative cell division protein complement(366497..368140) Dickeya zeae Ech1591 8116873 YP_003002681.1 CDS Dd1591_0312 NC_012912.1 368324 369046 D PFAM: YheO domain protein; KEGG: eca:ECA4042 putative DNA-binding protein; YheO domain-containing protein 368324..369046 Dickeya zeae Ech1591 8116874 YP_003002682.1 CDS Dd1591_0313 NC_012912.1 369046 369435 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 369046..369435 Dickeya zeae Ech1591 8116875 YP_003002683.1 CDS Dd1591_0314 NC_012912.1 369452 369811 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 369452..369811 Dickeya zeae Ech1591 8116876 YP_003002684.1 CDS Dd1591_0315 NC_012912.1 369823 370110 D TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: eca:ECA4039 putative intracellular sulfur oxidation protein; sulfur relay protein TusB/DsrH 369823..370110 Dickeya zeae Ech1591 8116877 YP_003002685.1 CDS rpsL NC_012912.1 370243 370617 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 370243..370617 Dickeya zeae Ech1591 8116878 YP_003002686.1 CDS Dd1591_0317 NC_012912.1 370714 371184 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 370714..371184 Dickeya zeae Ech1591 8116879 YP_003002687.1 CDS Dd1591_0318 NC_012912.1 371276 373390 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 371276..373390 Dickeya zeae Ech1591 8116880 YP_003002688.1 CDS Dd1591_0319 NC_012912.1 373480 374664 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 373480..374664 Dickeya zeae Ech1591 8116881 YP_003002689.1 CDS Dd1591_0320 NC_012912.1 374794 374988 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: eca:ECA4034 bacterioferritin-associated ferredoxin; BFD domain-containing protein (2Fe-2S)-binding domain-containing protein 374794..374988 Dickeya zeae Ech1591 8116882 YP_003002690.1 CDS Dd1591_0321 NC_012912.1 375064 375537 D iron storage protein; bacterioferritin 375064..375537 Dickeya zeae Ech1591 8116883 YP_003002691.1 CDS rpsJ NC_012912.1 375831 376142 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 375831..376142 Dickeya zeae Ech1591 8116884 YP_003002692.1 CDS Dd1591_0323 NC_012912.1 376175 376804 D PFAM: ribosomal protein L3; KEGG: eca:ECA4031 50S ribosomal protein L3; 50S ribosomal protein L3 376175..376804 Dickeya zeae Ech1591 8116885 YP_003002693.1 CDS rplD NC_012912.1 376815 377420 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 376815..377420 Dickeya zeae Ech1591 8116886 YP_003002694.1 CDS rplW NC_012912.1 377417 377719 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 377417..377719 Dickeya zeae Ech1591 8116887 YP_003002695.1 CDS rplB NC_012912.1 377737 378558 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 377737..378558 Dickeya zeae Ech1591 8116888 YP_003002696.1 CDS rpsS NC_012912.1 378575 378853 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 378575..378853 Dickeya zeae Ech1591 8116889 YP_003002697.1 CDS rplV NC_012912.1 378868 379200 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 378868..379200 Dickeya zeae Ech1591 8116890 YP_003002698.1 CDS rpsC NC_012912.1 379218 379919 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 379218..379919 Dickeya zeae Ech1591 8116891 YP_003002699.1 CDS Dd1591_0330 NC_012912.1 379933 380343 D TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: eca:ECA4024 50S ribosomal protein L16; 50S ribosomal protein L16 379933..380343 Dickeya zeae Ech1591 8116892 YP_003002700.1 CDS Dd1591_0331 NC_012912.1 380343 380534 D TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: ypb:YPTS_3882 ribosomal protein L29; 50S ribosomal protein L29 380343..380534 Dickeya zeae Ech1591 8116893 YP_003002701.1 CDS Dd1591_0332 NC_012912.1 380534 380788 D PFAM: ribosomal protein S17; KEGG: eum:ECUMN_3784 30S ribosomal subunit protein S17; 30S ribosomal protein S17 380534..380788 Dickeya zeae Ech1591 8116894 YP_003002702.1 CDS rplN NC_012912.1 380954 381325 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 380954..381325 Dickeya zeae Ech1591 8116895 YP_003002703.1 CDS rplX NC_012912.1 381336 381650 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 381336..381650 Dickeya zeae Ech1591 8116896 YP_003002704.1 CDS Dd1591_0335 NC_012912.1 381665 382204 D PFAM: ribosomal protein L5; KEGG: set:SEN3256 50S ribosomal subunit protein L5; 50S ribosomal protein L5 381665..382204 Dickeya zeae Ech1591 8116897 YP_003002705.1 CDS rpsN NC_012912.1 382218 382523 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 382218..382523 Dickeya zeae Ech1591 8116898 YP_003002706.1 CDS rpsH NC_012912.1 382557 382949 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 382557..382949 Dickeya zeae Ech1591 8116899 YP_003002707.1 CDS rplF NC_012912.1 382963 383496 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 382963..383496 Dickeya zeae Ech1591 8116900 YP_003002708.1 CDS rplR NC_012912.1 383506 383859 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 383506..383859 Dickeya zeae Ech1591 8116901 YP_003002709.1 CDS rpsE NC_012912.1 383874 384374 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 383874..384374 Dickeya zeae Ech1591 8116902 YP_003002710.1 CDS rpmD NC_012912.1 384381 384560 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 384381..384560 Dickeya zeae Ech1591 8116903 YP_003002711.1 CDS rplO NC_012912.1 384564 384998 D late assembly protein; 50S ribosomal protein L15 384564..384998 Dickeya zeae Ech1591 8116904 YP_003002712.1 CDS secY NC_012912.1 385006 386337 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 385006..386337 Dickeya zeae Ech1591 8116905 YP_003002713.1 CDS rpmJ NC_012912.1 386371 386487 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 386371..386487 Dickeya zeae Ech1591 8116906 YP_003002714.1 CDS Dd1591_0345 NC_012912.1 386634 386990 D PFAM: ribosomal protein S13; KEGG: pmr:PMI3277 30S ribosomal protein S13; 30S ribosomal protein S13 386634..386990 Dickeya zeae Ech1591 8116907 YP_004778103.1 CDS Dd1591_0345a NC_012912.1 387007 387396 D ribosomal protein S11 387007..387396 Dickeya zeae Ech1591 11033610 YP_003002716.1 CDS rpsD NC_012912.1 387427 388047 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 387427..388047 Dickeya zeae Ech1591 8116909 YP_003002717.1 CDS Dd1591_0348 NC_012912.1 388073 389062 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 388073..389062 Dickeya zeae Ech1591 8116910 YP_003002718.1 CDS rplQ NC_012912.1 389103 389495 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 389103..389495 Dickeya zeae Ech1591 8116911 YP_003002719.1 CDS Dd1591_0350 NC_012912.1 389624 390013 D KEGG: kpn:KPN_03693 hypothetical protein; hypothetical protein 389624..390013 Dickeya zeae Ech1591 8116912 YP_003002720.1 CDS Dd1591_0351 NC_012912.1 390071 390295 D PFAM: protein of unknown function DUF331; KEGG: eum:ECUMN_3765 hypothetical protein; hypothetical protein 390071..390295 Dickeya zeae Ech1591 8116913 YP_003002721.1 CDS Dd1591_0352 NC_012912.1 390302 390727 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: spe:Spro_4515 large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein complement(390302..390727) Dickeya zeae Ech1591 8116914 YP_003002722.1 CDS trkA NC_012912.1 390834 392210 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component complement(390834..392210) Dickeya zeae Ech1591 8116915 YP_003002723.1 CDS Dd1591_0354 NC_012912.1 392253 393548 R catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B complement(392253..393548) Dickeya zeae Ech1591 8116916 YP_003002724.1 CDS Dd1591_0355 NC_012912.1 393609 394550 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: eca:ECA4000 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(393609..394550) Dickeya zeae Ech1591 8116917 YP_003002725.1 CDS def NC_012912.1 394589 395098 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(394589..395098) Dickeya zeae Ech1591 8116918 YP_003002726.1 CDS Dd1591_0357 NC_012912.1 395212 396345 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: eca:ECA3998 hypothetical protein; DNA protecting protein DprA 395212..396345 Dickeya zeae Ech1591 8116919 YP_003002727.1 CDS Dd1591_0358 NC_012912.1 396317 396790 D PFAM: protein of unknown function DUF494; KEGG: eca:ECA3997 hypothetical protein; hypothetical protein 396317..396790 Dickeya zeae Ech1591 8116920 YP_003002728.1 CDS Dd1591_0359 NC_012912.1 396810 397367 D PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: eca:ECA3996 putative DNA topoisomerase; DNA topoisomerase type IA zn finger domain-containing protein 396810..397367 Dickeya zeae Ech1591 8116921 YP_003002729.1 CDS Dd1591_0360 NC_012912.1 397357 397929 D PFAM: SUA5/yciO/yrdC domain; KEGG: eca:ECA3996 putative DNA topoisomerase; SUA5/yciO/yrdC domain-containing protein 397357..397929 Dickeya zeae Ech1591 8116922 YP_003002730.1 CDS Dd1591_0361 NC_012912.1 397949 398776 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: eca:ECA3995 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 397949..398776 Dickeya zeae Ech1591 8116923 YP_003002731.1 CDS Dd1591_0362 NC_012912.1 398773 399042 D PFAM: protein of unknown function DUF1488; KEGG: eca:ECA3994 hypothetical protein; hypothetical protein 398773..399042 Dickeya zeae Ech1591 8116924 YP_003002732.1 CDS Dd1591_0363 NC_012912.1 399061 399597 R KEGG: eca:ECA3993 putative transferase; putative transferase complement(399061..399597) Dickeya zeae Ech1591 8116925 YP_003002733.1 CDS Dd1591_0364 NC_012912.1 405764 406693 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 405764..406693 Dickeya zeae Ech1591 8116931 YP_003002734.1 CDS Dd1591_0365 NC_012912.1 407010 408608 D KEGG: esa:ESA_00053 malate synthase; TIGRFAM: malate synthase A; PFAM: malate synthase; malate synthase A 407010..408608 Dickeya zeae Ech1591 8116932 YP_003002735.1 CDS Dd1591_0366 NC_012912.1 408632 409939 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: eca:ECA3990 isocitrate lyase; isocitrate lyase 408632..409939 Dickeya zeae Ech1591 8116933 YP_003002736.1 CDS aceK NC_012912.1 410018 411775 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 410018..411775 Dickeya zeae Ech1591 8116934 YP_003002737.1 CDS Dd1591_0368 NC_012912.1 411782 412615 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; transcriptional repressor IclR complement(411782..412615) Dickeya zeae Ech1591 8116935 YP_003002738.1 CDS metH NC_012912.1 412774 416460 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 412774..416460 Dickeya zeae Ech1591 8116936 YP_003002739.1 CDS Dd1591_0370 NC_012912.1 416537 417991 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: eca:ECA3984 putative sodium:sulfate symporter; anion transporter complement(416537..417991) Dickeya zeae Ech1591 8116937 YP_003002740.1 CDS Dd1591_0371 NC_012912.1 418309 419955 D TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: eca:ECA3983 putative sodium/phosphate cotransporter; sodium-dependent inorganic phosphate (Pi) transporter 418309..419955 Dickeya zeae Ech1591 8116938 YP_003002741.1 CDS Dd1591_0372 NC_012912.1 420034 421398 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(420034..421398) Dickeya zeae Ech1591 8116939 YP_003002742.1 CDS pgi NC_012912.1 421905 423554 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 421905..423554 Dickeya zeae Ech1591 8116940 YP_003002743.1 CDS Dd1591_0374 NC_012912.1 423823 424167 D KEGG: spe:Spro_0410 hypothetical protein; hypothetical protein 423823..424167 Dickeya zeae Ech1591 8116941 YP_003002744.1 CDS Dd1591_0375 NC_012912.1 424219 425256 R KEGG: eca:ECA3977 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein complement(424219..425256) Dickeya zeae Ech1591 8116942 YP_003002745.1 CDS Dd1591_0376 NC_012912.1 425296 425862 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 425296..425862 Dickeya zeae Ech1591 8116943 YP_003002746.1 CDS Dd1591_0377 NC_012912.1 426018 426371 D PFAM: protein of unknown function DUF486; KEGG: eca:ECA3974 hypothetical protein; hypothetical protein 426018..426371 Dickeya zeae Ech1591 8116944 YP_003002747.1 CDS Dd1591_0378 NC_012912.1 426512 427051 R PFAM: Lipocalin family protein; KEGG: eca:ECA3973 outer membrane lipoprotein Blc; Lipocalin family protein complement(426512..427051) Dickeya zeae Ech1591 8116945 YP_003002748.1 CDS Dd1591_0379 NC_012912.1 427163 427519 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(427163..427519) Dickeya zeae Ech1591 8116946 YP_003002749.1 CDS Dd1591_0380 NC_012912.1 427534 427929 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C complement(427534..427929) Dickeya zeae Ech1591 8118467 YP_003002750.1 CDS Dd1591_0381 NC_012912.1 427942 428676 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(427942..428676) Dickeya zeae Ech1591 8118468 YP_003002751.1 CDS Dd1591_0382 NC_012912.1 428669 430465 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(428669..430465) Dickeya zeae Ech1591 8118469 YP_003002752.1 CDS Dd1591_0383 NC_012912.1 430873 431850 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 430873..431850 Dickeya zeae Ech1591 8118470 YP_003002753.1 CDS Dd1591_0384 NC_012912.1 431986 435309 R PFAM: MscS Mechanosensitive ion channel; KEGG: eca:ECA3967 hypothetical protein; hypothetical protein complement(431986..435309) Dickeya zeae Ech1591 8118471 YP_003002754.1 CDS Dd1591_0385 NC_012912.1 435339 436253 R KEGG: eca:ECA3966 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase complement(435339..436253) Dickeya zeae Ech1591 8118472 YP_003002755.1 CDS Dd1591_0386 NC_012912.1 436324 437373 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(436324..437373) Dickeya zeae Ech1591 8118473 YP_003002756.1 CDS Dd1591_0387 NC_012912.1 437521 438063 D PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: spe:Spro_0424 oligoribonuclease; Exonuclease RNase T and DNA polymerase III 437521..438063 Dickeya zeae Ech1591 8118474 YP_003002757.1 CDS Dd1591_0388 NC_012912.1 438643 439494 D KEGG: pen:PSEEN0738 hypothetical protein; hypothetical protein 438643..439494 Dickeya zeae Ech1591 8118476 YP_003002758.1 CDS Dd1591_0389 NC_012912.1 439491 440810 D KEGG: pfo:Pfl01_0146 hypothetical protein; hypothetical protein 439491..440810 Dickeya zeae Ech1591 8118477 YP_003002759.1 CDS Dd1591_0390 NC_012912.1 440807 442930 D PFAM: peptidase M50; KEGG: pfo:Pfl01_0147 peptidase M50; peptidase M50 440807..442930 Dickeya zeae Ech1591 8118478 YP_003002760.1 CDS Dd1591_0391 NC_012912.1 443204 444118 D PFAM: Tail Collar domain protein; KEGG: avi:Avi_5259 hypothetical protein; Tail Collar domain-containing protein 443204..444118 Dickeya zeae Ech1591 8118479 YP_003002761.1 CDS Dd1591_0392 NC_012912.1 444285 450290 D PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: hch:HCH_03194 outer membrane protein domain-containing protein; Ig family protein 444285..450290 Dickeya zeae Ech1591 8118480 YP_003002762.1 CDS Dd1591_0393 NC_012912.1 450348 451856 D KEGG: ppw:PputW619_0676 outer membrane efflux protein; outer membrane efflux protein 450348..451856 Dickeya zeae Ech1591 8118481 YP_003002763.1 CDS Dd1591_0394 NC_012912.1 451977 453569 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: yen:YE0409 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(451977..453569) Dickeya zeae Ech1591 8118482 YP_003002764.1 CDS Dd1591_0395 NC_012912.1 454364 456034 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: yen:YE3615 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 454364..456034 Dickeya zeae Ech1591 8118483 YP_003002765.1 CDS Dd1591_0396 NC_012912.1 456248 457144 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: spe:Spro_4199 putative DNA-binding transcriptional regulator; putative DNA-binding transcriptional regulator complement(456248..457144) Dickeya zeae Ech1591 8118484 YP_003002766.1 CDS Dd1591_0397 NC_012912.1 457304 458635 D TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: spe:Spro_4200 amidohydrolase; amidohydrolase 457304..458635 Dickeya zeae Ech1591 8118485 YP_003002767.1 CDS Dd1591_0398 NC_012912.1 458632 460083 D TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: spe:Spro_4201 amidohydrolase; amidohydrolase 458632..460083 Dickeya zeae Ech1591 8118486 YP_003002768.1 CDS Dd1591_0399 NC_012912.1 460446 461435 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sea:SeAg_B4544 invertase; transposase IS116/IS110/IS902 family protein complement(460446..461435) Dickeya zeae Ech1591 8118487 YP_003002769.1 CDS abgT NC_012912.1 461843 463360 D TIGRFAM: AbgT transporter family; PFAM: AbgT putative transporter; KEGG: plu:plu3724 putative aminobenzoyl-glutamate transporter; putative aminobenzoyl-glutamate transporter 461843..463360 Dickeya zeae Ech1591 8118488 YP_003002770.1 CDS Dd1591_0401 NC_012912.1 463512 463982 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: eca:ECA3168 transcriptional regulator of organic hydroperoxide resistance gene ohr; MarR family transcriptional regulator 463512..463982 Dickeya zeae Ech1591 8118489 YP_003002771.1 CDS Dd1591_0402 NC_012912.1 464103 464528 D PFAM: OsmC family protein; KEGG: eca:ECA3167 organic hydroperoxide resistance protein; OsmC family protein 464103..464528 Dickeya zeae Ech1591 8118490 YP_003002772.1 CDS Dd1591_0403 NC_012912.1 464598 465608 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: psp:PSPPH_3647 lipase; alpha/beta hydrolase fold-3 domain-containing protein 464598..465608 Dickeya zeae Ech1591 8118491 YP_003002773.1 CDS Dd1591_0404 NC_012912.1 465669 466487 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2153 ABC transporter, ATP-binding protein; ABC transporter complement(465669..466487) Dickeya zeae Ech1591 8118492 YP_003002774.1 CDS Dd1591_0405 NC_012912.1 466506 467441 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2154 putative ABC transporter, permease; polar amino acid ABC transporter permease complement(466506..467441) Dickeya zeae Ech1591 8118493 YP_003002775.1 CDS Dd1591_0406 NC_012912.1 467455 467985 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA2155 putative acetyltransferase; GCN5-related N-acetyltransferase complement(467455..467985) Dickeya zeae Ech1591 8118494 YP_003002776.1 CDS Dd1591_0407 NC_012912.1 468015 468962 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA2156 ABC transporter, substrate binding protein; extracellular solute-binding protein family 3 complement(468015..468962) Dickeya zeae Ech1591 8118495 YP_003002777.1 CDS Dd1591_0408 NC_012912.1 469037 470413 R KEGG: eca:ECA2158 hypothetical protein; hypothetical protein complement(469037..470413) Dickeya zeae Ech1591 8118496 YP_003002778.1 CDS Dd1591_0409 NC_012912.1 470837 471826 D PFAM: Luciferase-like monooxygenase; KEGG: eca:ECA2161 putative luciferase-like monooxygenase; Luciferase-like monooxygenase 470837..471826 Dickeya zeae Ech1591 8118497 YP_003002779.1 CDS Dd1591_0410 NC_012912.1 471816 472406 R KEGG: ent:Ent638_0389 hypothetical protein; hypothetical protein complement(471816..472406) Dickeya zeae Ech1591 8118498 YP_003002780.1 CDS Dd1591_0412 NC_012912.1 475648 475902 R KEGG: pmr:PMI3401 sugar fermentation stimulation protein; putative transcriptional regulator Nlp complement(475648..475902) Dickeya zeae Ech1591 8118501 YP_003002781.1 CDS Dd1591_0413 NC_012912.1 476340 477638 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: eca:ECA0932 permease; cytosine/purines uracil thiamine allantoin permease complement(476340..477638) Dickeya zeae Ech1591 8118502 YP_003002782.1 CDS Dd1591_0414 NC_012912.1 477663 478331 R PFAM: PAS fold-4 domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: yen:YE0514 putative transcriptional regulator; LuxR family transcriptional regulator complement(477663..478331) Dickeya zeae Ech1591 8118503 YP_003002783.1 CDS Dd1591_0415 NC_012912.1 478529 478816 D KEGG: spe:Spro_0470 putative transcriptional regulator, Nlp; putative transcriptional regulator Nlp 478529..478816 Dickeya zeae Ech1591 8118504 YP_003002784.1 CDS Dd1591_0417 NC_012912.1 480420 480938 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein; Hcp1 family type VI secretion system effector 480420..480938 Dickeya zeae Ech1591 8118506 YP_003002785.1 CDS Dd1591_0418 NC_012912.1 481104 482957 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA2867 putative rhs accessory genetic element; type VI secretion system Vgr family protein 481104..482957 Dickeya zeae Ech1591 8118507 YP_003002786.1 CDS Dd1591_0419 NC_012912.1 482971 483378 D PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein; hypothetical protein 482971..483378 Dickeya zeae Ech1591 8118508 YP_003002787.1 CDS Dd1591_0420 NC_012912.1 483390 487817 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; PAAR repeat-containing protein; KEGG: eca:ECA4278 rhs-family protein; YD repeat protein 483390..487817 Dickeya zeae Ech1591 8118509 YP_003002788.1 CDS Dd1591_0421 NC_012912.1 487820 488224 D KEGG: esa:ESA_03890 hypothetical protein; hypothetical protein 487820..488224 Dickeya zeae Ech1591 8118510 YP_003002789.1 CDS Dd1591_0422 NC_012912.1 488695 488955 D hypothetical protein 488695..488955 Dickeya zeae Ech1591 8118511 YP_003002790.1 CDS Dd1591_0424 NC_012912.1 489756 491357 D PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: eca:ECA3435 putative sigma-54 dependent transcriptional regulator; Sigma 54 interacting domain-containing protein 489756..491357 Dickeya zeae Ech1591 8118513 YP_003002791.1 CDS Dd1591_0425 NC_012912.1 491443 493242 R PFAM: Relaxase; protein of unknown function DUF1528; KEGG: bpt:Bpet1092 putative helicase; Relaxase complement(491443..493242) Dickeya zeae Ech1591 8118514 YP_003002792.1 CDS Dd1591_0426 NC_012912.1 493556 494524 D hypothetical protein 493556..494524 Dickeya zeae Ech1591 8118515 YP_003002793.1 CDS Dd1591_0427 NC_012912.1 494726 495091 D KEGG: pla:Plav_3432 hypothetical protein; hypothetical protein 494726..495091 Dickeya zeae Ech1591 8118516 YP_003002794.1 CDS Dd1591_0428 NC_012912.1 495098 496621 R KEGG: pla:Plav_3431 hypothetical protein; hypothetical protein complement(495098..496621) Dickeya zeae Ech1591 8118517 YP_003002795.1 CDS Dd1591_0429 NC_012912.1 496633 496983 R KEGG: bpt:Bpet1504 hypothetical protein; hypothetical protein complement(496633..496983) Dickeya zeae Ech1591 8118518 YP_003002796.1 CDS Dd1591_0430 NC_012912.1 496980 498380 R KEGG: net:Neut_0075 hypothetical protein; hypothetical protein complement(496980..498380) Dickeya zeae Ech1591 8118519 YP_003002797.1 CDS Dd1591_0431 NC_012912.1 498388 499314 R PFAM: protein of unknown function DUF1527; KEGG: eba:ebA2511 hypothetical protein; hypothetical protein complement(498388..499314) Dickeya zeae Ech1591 8118520 YP_003002798.1 CDS Dd1591_0432 NC_012912.1 499311 499769 R PFAM: protein of unknown function DUF1525; KEGG: ajs:Ajs_2183 hypothetical protein; hypothetical protein complement(499311..499769) Dickeya zeae Ech1591 8118521 YP_003002799.1 CDS Dd1591_0433 NC_012912.1 499921 500532 D KEGG: maq:Maqu_0393 hypothetical protein; hypothetical protein 499921..500532 Dickeya zeae Ech1591 8118522 YP_003002800.1 CDS Dd1591_0434 NC_012912.1 500525 501544 D PFAM: Domain of unknown function DUF1814; KEGG: maq:Maqu_0394 hypothetical protein; hypothetical protein 500525..501544 Dickeya zeae Ech1591 8118523 YP_003002801.1 CDS Dd1591_0435 NC_012912.1 501545 504394 R KEGG: net:Neut_0086 hypothetical protein; hypothetical protein complement(501545..504394) Dickeya zeae Ech1591 8118524 YP_003002802.1 CDS Dd1591_0436 NC_012912.1 504394 504831 R KEGG: net:Neut_0087 putative secreted protein; putative secreted protein complement(504394..504831) Dickeya zeae Ech1591 8118525 YP_003002803.1 CDS Dd1591_0437 NC_012912.1 504812 506212 R KEGG: xcv:XCV2369 putative secreted protein; putative secreted protein complement(504812..506212) Dickeya zeae Ech1591 8118526 YP_003002804.1 CDS Dd1591_0438 NC_012912.1 506202 507095 R KEGG: har:HEAR2017 putative signal peptide; putative signal peptide complement(506202..507095) Dickeya zeae Ech1591 8118527 YP_003002805.1 CDS Dd1591_0439 NC_012912.1 507092 507772 R KEGG: net:Neut_0090 putative secreted protein; putative secreted protein complement(507092..507772) Dickeya zeae Ech1591 8118528 YP_003002806.1 CDS Dd1591_0440 NC_012912.1 507769 508167 R KEGG: ajs:Ajs_1403 hypothetical protein; hypothetical protein complement(507769..508167) Dickeya zeae Ech1591 8118529 YP_003002807.1 CDS Dd1591_0441 NC_012912.1 508180 508539 R KEGG: bxe:Bxe_A1190 hypothetical protein; hypothetical protein complement(508180..508539) Dickeya zeae Ech1591 8118530 YP_003002808.1 CDS Dd1591_0442 NC_012912.1 508558 508791 R KEGG: net:Neut_0093 hypothetical protein; hypothetical protein complement(508558..508791) Dickeya zeae Ech1591 8118531 YP_003002809.1 CDS Dd1591_0443 NC_012912.1 508788 509165 R KEGG: net:Neut_0094 hypothetical protein; hypothetical protein complement(508788..509165) Dickeya zeae Ech1591 8118532 YP_003002810.1 CDS Dd1591_0444 NC_012912.1 509418 509831 D PFAM: Domain of unknown function DUF1863; KEGG: mgm:Mmc1_3118 hypothetical protein; hypothetical protein 509418..509831 Dickeya zeae Ech1591 8118533 YP_003002811.1 CDS Dd1591_0445 NC_012912.1 509859 511130 D KEGG: azo:azo3763 hypothetical protein; hypothetical protein 509859..511130 Dickeya zeae Ech1591 8118534 YP_003002812.1 CDS Dd1591_0446 NC_012912.1 511335 512450 D KEGG: sse:Ssed_3748 hypothetical protein; hypothetical protein 511335..512450 Dickeya zeae Ech1591 8118535 YP_003002813.1 CDS Dd1591_0447 NC_012912.1 512527 513276 R KEGG: xcv:XCV2376 hypothetical protein; hypothetical protein complement(512527..513276) Dickeya zeae Ech1591 8118536 YP_003002814.1 CDS Dd1591_0448 NC_012912.1 513273 515432 R KEGG: net:Neut_0098 hypothetical protein; hypothetical protein complement(513273..515432) Dickeya zeae Ech1591 8118537 YP_003002815.1 CDS Dd1591_0449 NC_012912.1 515437 515979 R KEGG: pla:Plav_3413 hypothetical protein; hypothetical protein complement(515437..515979) Dickeya zeae Ech1591 8118538 YP_003002816.1 CDS Dd1591_0450 NC_012912.1 515976 516566 R KEGG: har:HEAR2003 putative signal peptide; putative signal peptide complement(515976..516566) Dickeya zeae Ech1591 8118539 YP_003002817.1 CDS Dd1591_0451 NC_012912.1 516548 517255 R KEGG: ajs:Ajs_1277 putative secreted protein; putative secreted protein complement(516548..517255) Dickeya zeae Ech1591 8118540 YP_003002818.1 CDS Dd1591_0452 NC_012912.1 517267 517917 R KEGG: net:Neut_0102 hypothetical protein; hypothetical protein complement(517267..517917) Dickeya zeae Ech1591 8118541 YP_003002819.1 CDS Dd1591_0453 NC_012912.1 517914 518483 R KEGG: ajs:Ajs_1279 putative secreted protein; putative secreted protein complement(517914..518483) Dickeya zeae Ech1591 8118542 YP_003002820.1 CDS Dd1591_0454 NC_012912.1 519035 520168 D KEGG: mms:mma_3162 integrase; integrase 519035..520168 Dickeya zeae Ech1591 8118543 YP_003002821.1 CDS Dd1591_0455 NC_012912.1 520325 521326 R KEGG: eca:ECA1658 hypothetical protein; hypothetical protein complement(520325..521326) Dickeya zeae Ech1591 8118544 YP_003002822.1 CDS Dd1591_0456 NC_012912.1 521692 522492 D hypothetical protein 521692..522492 Dickeya zeae Ech1591 8118545 YP_003002823.1 CDS Dd1591_0457 NC_012912.1 523485 525764 R SMART: DEAD-like helicase; KEGG: net:Neut_0104 helicase domain-containing protein; DEAD-like helicase complement(523485..525764) Dickeya zeae Ech1591 8118546 YP_003002824.1 CDS Dd1591_0458 NC_012912.1 525900 527009 R KEGG: net:Neut_0106 hypothetical protein; hypothetical protein complement(525900..527009) Dickeya zeae Ech1591 8120061 YP_003002825.1 CDS Dd1591_0459 NC_012912.1 527079 527723 R KEGG: net:Neut_0107 hypothetical protein; hypothetical protein complement(527079..527723) Dickeya zeae Ech1591 8120194 YP_003002826.1 CDS Dd1591_0460 NC_012912.1 527842 528186 R KEGG: net:Neut_0109 plasmid-related protein; hypothetical protein complement(527842..528186) Dickeya zeae Ech1591 8120195 YP_003002827.1 CDS Dd1591_0461 NC_012912.1 528277 528939 R KEGG: rme:Rmet_2322 hypothetical protein; hypothetical protein complement(528277..528939) Dickeya zeae Ech1591 8120196 YP_003002828.1 CDS Dd1591_0462 NC_012912.1 529022 529915 R KEGG: pla:Plav_3399 hypothetical protein; hypothetical protein complement(529022..529915) Dickeya zeae Ech1591 8120197 YP_003002829.1 CDS Dd1591_0463 NC_012912.1 530420 530785 R KEGG: eba:ebB76 hypothetical protein; hypothetical protein complement(530420..530785) Dickeya zeae Ech1591 8120198 YP_003002830.1 CDS Dd1591_0464 NC_012912.1 530934 531731 R KEGG: eba:ebA2454 hypothetical protein; hypothetical protein complement(530934..531731) Dickeya zeae Ech1591 8120199 YP_003002831.1 CDS Dd1591_0465 NC_012912.1 532114 533586 R TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: bxe:Bxe_A1222 C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase complement(532114..533586) Dickeya zeae Ech1591 8120200 YP_003002832.1 CDS Dd1591_0466 NC_012912.1 534110 536122 R KEGG: xcv:XCV2287 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; DNA topoisomerase III complement(534110..536122) Dickeya zeae Ech1591 8120201 YP_003002833.1 CDS Dd1591_0468 NC_012912.1 536742 536996 D hypothetical protein 536742..536996 Dickeya zeae Ech1591 8120203 YP_003002834.1 CDS Dd1591_0470 NC_012912.1 537627 538796 D KEGG: xac:XAC2263 hypothetical protein; hypothetical protein 537627..538796 Dickeya zeae Ech1591 8120205 YP_003002835.1 CDS Dd1591_0471 NC_012912.1 538793 539254 D KEGG: xac:XAC2262 hypothetical protein; hypothetical protein 538793..539254 Dickeya zeae Ech1591 8120206 YP_003002836.1 CDS Dd1591_0472 NC_012912.1 539251 541245 D KEGG: ppu:PP_4535 hypothetical protein; hypothetical protein 539251..541245 Dickeya zeae Ech1591 8120207 YP_003002837.1 CDS Dd1591_0473 NC_012912.1 541353 541754 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(541353..541754) Dickeya zeae Ech1591 8120208 YP_003002838.1 CDS Dd1591_0474 NC_012912.1 541845 542375 R KEGG: tmz:Tmz1t_0992 hypothetical protein; hypothetical protein complement(541845..542375) Dickeya zeae Ech1591 8120209 YP_003002839.1 CDS Dd1591_0475 NC_012912.1 542372 543190 R PFAM: Domain of unknown function DUF1845; KEGG: bpt:Bpet1294 hypothetical protein; hypothetical protein complement(542372..543190) Dickeya zeae Ech1591 8120210 YP_003002840.1 CDS Dd1591_0476 NC_012912.1 543374 544588 R KEGG: bpt:Bpet1293 hypothetical protein; hypothetical protein complement(543374..544588) Dickeya zeae Ech1591 8120211 YP_003002841.1 CDS Dd1591_0477 NC_012912.1 544588 545148 R KEGG: bpt:Bpet1292 hypothetical protein; hypothetical protein complement(544588..545148) Dickeya zeae Ech1591 8120212 YP_003002842.1 CDS Dd1591_0478 NC_012912.1 545160 546884 R KEGG: bpt:Bpet1291 hypothetical protein; hypothetical protein complement(545160..546884) Dickeya zeae Ech1591 8120213 YP_003002843.1 CDS Dd1591_0479 NC_012912.1 546892 547137 R KEGG: bpt:ig_0609 hypothetical protein; hypothetical protein complement(546892..547137) Dickeya zeae Ech1591 8120214 YP_003002844.1 CDS Dd1591_0480 NC_012912.1 547121 547828 R KEGG: bpt:Bpet1290 hypothetical protein; hypothetical protein complement(547121..547828) Dickeya zeae Ech1591 8120215 YP_003002845.1 CDS Dd1591_0481 NC_012912.1 547862 548074 R PFAM: Prophage CP4-57 regulatory; KEGG: bpt:Bpet1289 putative transcriptional regulator (phage-related); phage transcriptional regulator AlpA complement(547862..548074) Dickeya zeae Ech1591 8120216 YP_003002846.1 CDS Dd1591_0485 NC_012912.1 549326 550252 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: eca:ECA3947 putative D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 549326..550252 Dickeya zeae Ech1591 8120220 YP_003002847.1 CDS Dd1591_0486 NC_012912.1 550826 551965 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA3940 putative 4Fe-4S binding protein; iron-sulfur cluster binding protein complement(550826..551965) Dickeya zeae Ech1591 8120222 YP_003002848.1 CDS Dd1591_0487 NC_012912.1 552176 553717 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: eca:ECA3939 hypothetical protein; hypothetical protein 552176..553717 Dickeya zeae Ech1591 8120223 YP_003002849.1 CDS Dd1591_0488 NC_012912.1 553714 554196 D PFAM: protein of unknown function UPF0079; KEGG: spe:Spro_0427 putative ATPase; hypothetical protein 553714..554196 Dickeya zeae Ech1591 8120224 YP_003002850.1 CDS Dd1591_0489 NC_012912.1 554193 555875 D PFAM: cell wall hydrolase/autolysin; Peptidoglycan-binding LysM; SMART: cell wall hydrolase/autolysin; Peptidoglycan-binding LysM; KEGG: eca:ECA3937 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 554193..555875 Dickeya zeae Ech1591 8120225 YP_003002851.1 CDS mutL NC_012912.1 555899 557848 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 555899..557848 Dickeya zeae Ech1591 8120226 YP_003002852.1 CDS Dd1591_0491 NC_012912.1 557841 558782 D KEGG: eca:ECA3935 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 557841..558782 Dickeya zeae Ech1591 8120227 YP_003002853.1 CDS hfq NC_012912.1 558909 559208 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 558909..559208 Dickeya zeae Ech1591 8120228 YP_003002854.1 CDS Dd1591_0493 NC_012912.1 559298 560599 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; putative GTPase HflX 559298..560599 Dickeya zeae Ech1591 8120229 YP_003002855.1 CDS Dd1591_0494 NC_012912.1 560651 561913 D KEGG: eca:ECA3932 FtsH protease regulator HflK; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein; HflK protein 560651..561913 Dickeya zeae Ech1591 8120230 YP_003002856.1 CDS Dd1591_0495 NC_012912.1 561917 562912 D with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 561917..562912 Dickeya zeae Ech1591 8120231 YP_003002857.1 CDS Dd1591_0496 NC_012912.1 562976 563176 D KEGG: eca:ECA3930 hypothetical protein; hypothetical protein 562976..563176 Dickeya zeae Ech1591 8120232 YP_003002858.1 CDS Dd1591_0497 NC_012912.1 563276 564574 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 563276..564574 Dickeya zeae Ech1591 8120233 YP_003002859.1 CDS Dd1591_0498 NC_012912.1 564685 566067 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: eca:ECA3928 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(564685..566067) Dickeya zeae Ech1591 8120234 YP_003002860.1 CDS Dd1591_0499 NC_012912.1 566238 567242 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 566238..567242 Dickeya zeae Ech1591 8120235 YP_003002861.1 CDS Dd1591_0500 NC_012912.1 567322 567753 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(567322..567753) Dickeya zeae Ech1591 8120236 YP_003002862.1 CDS Dd1591_0501 NC_012912.1 567753 568316 R PFAM: protein of unknown function DUF179; KEGG: eca:ECA3925 hypothetical protein; hypothetical protein complement(567753..568316) Dickeya zeae Ech1591 8120237 YP_003002863.1 CDS Dd1591_0502 NC_012912.1 568444 569397 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(568444..569397) Dickeya zeae Ech1591 8120238 YP_003002864.1 CDS Dd1591_0503 NC_012912.1 569409 570143 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(569409..570143) Dickeya zeae Ech1591 8120239 YP_003002865.1 CDS Dd1591_0504 NC_012912.1 570275 570976 R PFAM: Endonuclease I; KEGG: eca:ECA3922 endonuclease; Deoxyribonuclease I complement(570275..570976) Dickeya zeae Ech1591 8120240 YP_003002866.1 CDS Dd1591_0505 NC_012912.1 571075 571587 R PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: eca:ECA3921 hypothetical protein; hypothetical protein complement(571075..571587) Dickeya zeae Ech1591 8120241 YP_003002867.1 CDS Dd1591_0506 NC_012912.1 571700 572854 R KEGG: eca:ECA3920 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase complement(571700..572854) Dickeya zeae Ech1591 8120242 YP_003002868.1 CDS Dd1591_0507 NC_012912.1 573631 573789 D hypothetical protein 573631..573789 Dickeya zeae Ech1591 8120243 YP_003002869.1 CDS Dd1591_0508 NC_012912.1 573782 575758 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 573782..575758 Dickeya zeae Ech1591 8120244 YP_003002870.1 CDS Dd1591_0509 NC_012912.1 575985 577178 D PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_4593 hypothetical protein; hypothetical protein 575985..577178 Dickeya zeae Ech1591 8120245 YP_003002871.1 CDS Dd1591_0510 NC_012912.1 577557 579551 D TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: eca:ECA0861 transketolase; transketolase 577557..579551 Dickeya zeae Ech1591 8120246 YP_003002872.1 CDS Dd1591_0511 NC_012912.1 579611 580936 R PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_05087 hypothetical protein; transposase IS4 family protein complement(579611..580936) Dickeya zeae Ech1591 8120247 YP_003002873.1 CDS Dd1591_0512 NC_012912.1 581313 582329 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 581313..582329 Dickeya zeae Ech1591 8120248 YP_003002874.1 CDS pgk NC_012912.1 582396 583559 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 582396..583559 Dickeya zeae Ech1591 8120249 YP_003002875.1 CDS Dd1591_0514 NC_012912.1 583746 584822 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 583746..584822 Dickeya zeae Ech1591 8120250 YP_003002876.1 CDS Dd1591_0515 NC_012912.1 584949 585827 D PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; KEGG: eca:ECA3910 putative mechanosensitive ion channel; MscS Mechanosensitive ion channel 584949..585827 Dickeya zeae Ech1591 8120251 YP_003002877.1 CDS Dd1591_0516 NC_012912.1 585959 586777 D PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: spe:Spro_3928 IclR family transcriptional regulator; IclR family transcriptional regulator 585959..586777 Dickeya zeae Ech1591 8120252 YP_003002878.1 CDS Dd1591_0517 NC_012912.1 586863 587618 D PFAM: protein of unknown function DUF541; KEGG: eca:ECA3908 hypothetical protein; hypothetical protein 586863..587618 Dickeya zeae Ech1591 8120253 YP_003002879.1 CDS Dd1591_0518 NC_012912.1 587642 588535 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(587642..588535) Dickeya zeae Ech1591 8120254 YP_003002880.1 CDS Dd1591_0519 NC_012912.1 588732 589394 D KEGG: eca:ECA3906 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 588732..589394 Dickeya zeae Ech1591 8120255 YP_003002881.1 CDS Dd1591_0520 NC_012912.1 589747 590979 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 589747..590979 Dickeya zeae Ech1591 8120256 YP_003002882.1 CDS Dd1591_0521 NC_012912.1 591072 592073 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: eca:ECA3904 putative zinc-binding dehydrogenase; zinc-binding alcohol dehydrogenase family protein complement(591072..592073) Dickeya zeae Ech1591 8120257 YP_003002883.1 CDS Dd1591_0522 NC_012912.1 592184 593080 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA3903 LysR family transcriptional activator; LysR family transcriptional regulator 592184..593080 Dickeya zeae Ech1591 8120258 YP_003002884.1 CDS Dd1591_0523 NC_012912.1 593514 595220 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA3902 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 593514..595220 Dickeya zeae Ech1591 8120259 YP_003002885.1 CDS Dd1591_0524 NC_012912.1 595350 597014 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(595350..597014) Dickeya zeae Ech1591 8120260 YP_003002886.1 CDS Dd1591_0525 NC_012912.1 597474 599405 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 597474..599405 Dickeya zeae Ech1591 8120261 YP_003002887.1 CDS Dd1591_0526 NC_012912.1 599586 599918 D TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: eca:ECA3899 Trp operon repressor; Trp operon repressor 599586..599918 Dickeya zeae Ech1591 8120262 YP_003002888.1 CDS Dd1591_0527 NC_012912.1 599933 600472 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(599933..600472) Dickeya zeae Ech1591 8120263 YP_003002889.1 CDS Dd1591_0528 NC_012912.1 600524 601174 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 600524..601174 Dickeya zeae Ech1591 8120264 YP_003002890.1 CDS Dd1591_0529 NC_012912.1 601171 602037 R PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA3896 right origin-binding protein; AraC family transcriptional regulator complement(601171..602037) Dickeya zeae Ech1591 8120265 YP_003002891.1 CDS Dd1591_0530 NC_012912.1 602237 602713 D PFAM: CreA family protein; KEGG: eca:ECA3894 hypothetical protein; hypothetical protein 602237..602713 Dickeya zeae Ech1591 8120266 YP_003002892.1 CDS Dd1591_0531 NC_012912.1 602787 603503 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: eca:ECA3893 two-component response regulator; two-component response regulator complement(602787..603503) Dickeya zeae Ech1591 8120267 YP_003002893.1 CDS Dd1591_0532 NC_012912.1 604071 604772 D member of the SPOUT superfamily of methyltransferases; putative RNA methyltransferase 604071..604772 Dickeya zeae Ech1591 8120268 YP_003002894.1 CDS thrA NC_012912.1 605210 607666 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 605210..607666 Dickeya zeae Ech1591 8120269 YP_003002895.1 CDS Dd1591_0534 NC_012912.1 607669 608598 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 607669..608598 Dickeya zeae Ech1591 8120270 YP_003002896.1 CDS Dd1591_0535 NC_012912.1 608602 609891 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 608602..609891 Dickeya zeae Ech1591 8120271 YP_003002897.1 CDS Dd1591_0536 NC_012912.1 609984 610766 R PFAM: protein of unknown function DUF328; KEGG: eca:ECA3888 hypothetical protein; hypothetical protein complement(609984..610766) Dickeya zeae Ech1591 8120272 YP_003002898.1 CDS Dd1591_0537 NC_012912.1 611069 612022 D KEGG: eca:ECA3887 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 611069..612022 Dickeya zeae Ech1591 8120273 YP_003002899.1 CDS Dd1591_0538 NC_012912.1 612049 613194 R KEGG: eca:ECA3886 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(612049..613194) Dickeya zeae Ech1591 8119821 YP_003002900.1 CDS mogA NC_012912.1 613589 614176 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 613589..614176 Dickeya zeae Ech1591 8119822 YP_003002901.1 CDS Dd1591_0540 NC_012912.1 614306 615643 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: eca:ECA3884 putative transport protein; major facilitator superfamily protein 614306..615643 Dickeya zeae Ech1591 8119823 YP_003002902.1 CDS Dd1591_0541 NC_012912.1 615732 616304 R PFAM: GPR1/FUN34/yaaH family protein; KEGG: eca:ECA3883 hypothetical protein; hypothetical protein complement(615732..616304) Dickeya zeae Ech1591 8119824 YP_003002903.1 CDS dnaK NC_012912.1 616690 618600 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 616690..618600 Dickeya zeae Ech1591 8119825 YP_003002904.1 CDS Dd1591_0543 NC_012912.1 618711 619844 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 618711..619844 Dickeya zeae Ech1591 8119826 YP_003002905.1 CDS nhaA NC_012912.1 620009 621214 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 620009..621214 Dickeya zeae Ech1591 8119827 YP_003002906.1 CDS nhaR NC_012912.1 621237 622127 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 621237..622127 Dickeya zeae Ech1591 8119828 YP_003002907.1 CDS rpsT NC_012912.1 622204 622467 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(622204..622467) Dickeya zeae Ech1591 8119829 YP_003002908.1 CDS Dd1591_0547 NC_012912.1 622865 623806 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 622865..623806 Dickeya zeae Ech1591 8119830 YP_003002909.1 CDS ileS NC_012912.1 623841 626666 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 623841..626666 Dickeya zeae Ech1591 8119831 YP_003002910.1 CDS lspA NC_012912.1 626666 627178 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 626666..627178 Dickeya zeae Ech1591 8119832 YP_003002911.1 CDS Dd1591_0550 NC_012912.1 627182 627640 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: eca:ECA3874 FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase FKBP-type 627182..627640 Dickeya zeae Ech1591 8119833 YP_003002912.1 CDS Dd1591_0551 NC_012912.1 627637 628587 D KEGG: eca:ECA3873 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 627637..628587 Dickeya zeae Ech1591 8119834 YP_003002913.1 CDS Dd1591_0552 NC_012912.1 628659 629576 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 628659..629576 Dickeya zeae Ech1591 8119835 YP_003002914.1 CDS Dd1591_0553 NC_012912.1 629781 630602 D KEGG: kpn:KPN_00039 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 629781..630602 Dickeya zeae Ech1591 8119836 YP_003002915.1 CDS Dd1591_0554 NC_012912.1 631057 632202 D TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: eca:ECA3871 carbamoyl phosphate synthase small subunit; carbamoyl-phosphate synthase small subunit 631057..632202 Dickeya zeae Ech1591 8119837 YP_003002916.1 CDS carB NC_012912.1 632290 635514 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 632290..635514 Dickeya zeae Ech1591 8119838 YP_003002917.1 CDS Dd1591_0556 NC_012912.1 635619 636233 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_0717 lysine exporter protein LysE/YggA; lysine exporter protein LysE/YggA complement(635619..636233) Dickeya zeae Ech1591 8119839 YP_003002918.1 CDS Dd1591_0557 NC_012912.1 636395 637177 D PFAM: protein of unknown function DUF1212; KEGG: eca:ECA3866 hypothetical protein; hypothetical protein 636395..637177 Dickeya zeae Ech1591 8119840 YP_003002919.1 CDS Dd1591_0558 NC_012912.1 637162 637632 D KEGG: eca:ECA3865 hypothetical protein; hypothetical protein 637162..637632 Dickeya zeae Ech1591 8119841 YP_003002920.1 CDS folA NC_012912.1 637741 638223 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 637741..638223 Dickeya zeae Ech1591 8119842 YP_003002921.1 CDS Dd1591_0560 NC_012912.1 638399 640303 D PFAM: protein of unknown function DUF839; KEGG: spe:Spro_0721 hypothetical protein; hypothetical protein 638399..640303 Dickeya zeae Ech1591 8119843 YP_003002922.1 CDS apaH NC_012912.1 640347 641192 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(640347..641192) Dickeya zeae Ech1591 8119844 YP_003002923.1 CDS apaG NC_012912.1 641199 641576 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(641199..641576) Dickeya zeae Ech1591 8119845 YP_003002924.1 CDS ksgA NC_012912.1 641592 642410 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(641592..642410) Dickeya zeae Ech1591 8119846 YP_003002925.1 CDS pdxA NC_012912.1 642403 643404 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(642403..643404) Dickeya zeae Ech1591 8119847 YP_003002926.1 CDS Dd1591_0565 NC_012912.1 643404 644696 R Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA complement(643404..644696) Dickeya zeae Ech1591 8119848 YP_003002927.1 CDS Dd1591_0566 NC_012912.1 644795 647218 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(644795..647218) Dickeya zeae Ech1591 8119849 YP_003002928.1 CDS djlA NC_012912.1 647369 648325 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 647369..648325 Dickeya zeae Ech1591 8119850 YP_003002929.1 CDS Dd1591_0568 NC_012912.1 648463 649116 R PFAM: pseudouridine synthase; KEGG: eca:ECA3854 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase complement(648463..649116) Dickeya zeae Ech1591 8119851 YP_003002930.1 CDS Dd1591_0569 NC_012912.1 649181 652084 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(649181..652084) Dickeya zeae Ech1591 8119852 YP_003002931.1 CDS Dd1591_0570 NC_012912.1 652343 654715 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(652343..654715) Dickeya zeae Ech1591 8119853 YP_003002932.1 CDS Dd1591_0571 NC_012912.1 654937 655305 D KEGG: eca:ECA4323 hypothetical protein; hypothetical protein 654937..655305 Dickeya zeae Ech1591 8119854 YP_003002933.1 CDS Dd1591_0572 NC_012912.1 655349 655906 R hypothetical protein complement(655349..655906) Dickeya zeae Ech1591 8119855 YP_003002934.1 CDS Dd1591_0573 NC_012912.1 655909 656475 R hypothetical protein complement(655909..656475) Dickeya zeae Ech1591 8119856 YP_003002935.1 CDS Dd1591_0574 NC_012912.1 656620 657168 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA1069 hypothetical protein; Hcp1 family type VI secretion system effector 656620..657168 Dickeya zeae Ech1591 8119857 YP_003002936.1 CDS Dd1591_0575 NC_012912.1 657235 657801 R hypothetical protein complement(657235..657801) Dickeya zeae Ech1591 8119858 YP_003002937.1 CDS Dd1591_0576 NC_012912.1 657798 658364 R hypothetical protein complement(657798..658364) Dickeya zeae Ech1591 8119859 YP_003002938.1 CDS Dd1591_0577 NC_012912.1 658361 658924 R hypothetical protein complement(658361..658924) Dickeya zeae Ech1591 8119860 YP_003002939.1 CDS Dd1591_0578 NC_012912.1 658934 659785 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: eli:ELI_07940 putative bacteriophage-acquired protein; peptidoglycan-binding domain 1 protein complement(658934..659785) Dickeya zeae Ech1591 8119861 YP_003002940.1 CDS Dd1591_0579 NC_012912.1 659976 660743 D PFAM: SNARE associated Golgi protein; KEGG: eca:ECA3850 hypothetical protein; hypothetical protein 659976..660743 Dickeya zeae Ech1591 8119862 YP_003002941.1 CDS Dd1591_0580 NC_012912.1 660787 661080 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit complement(660787..661080) Dickeya zeae Ech1591 8119863 YP_003002942.1 CDS Dd1591_0581 NC_012912.1 661084 662748 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: eca:ECA3848 acetolactate synthase catalytic subunit; acetolactate synthase catalytic subunit complement(661084..662748) Dickeya zeae Ech1591 8119864 YP_003002943.1 CDS thiQ NC_012912.1 663118 663810 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(663118..663810) Dickeya zeae Ech1591 8119865 YP_003002944.1 CDS thiP NC_012912.1 663794 665407 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(663794..665407) Dickeya zeae Ech1591 8119866 YP_003002945.1 CDS tbpA NC_012912.1 665383 666366 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(665383..666366) Dickeya zeae Ech1591 8119867 YP_003002946.1 CDS Dd1591_0585 NC_012912.1 666604 668271 R activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR complement(666604..668271) Dickeya zeae Ech1591 8119868 YP_003002947.1 CDS Dd1591_0586 NC_012912.1 668386 668544 D hypothetical protein 668386..668544 Dickeya zeae Ech1591 8119869 YP_003002948.1 CDS tnaA NC_012912.1 668675 670075 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(668675..670075) Dickeya zeae Ech1591 8119870 YP_003002949.1 CDS Dd1591_0588 NC_012912.1 670176 670286 R TIGRFAM: tryptophanase leader peptide; tryptophanase leader peptide complement(670176..670286) Dickeya zeae Ech1591 8119871 YP_003002950.1 CDS Dd1591_0589 NC_012912.1 670534 671436 D PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: cko:CKO_00978 hypothetical protein; FAD-binding 9 siderophore-interacting domain-containing protein 670534..671436 Dickeya zeae Ech1591 8119872 YP_003002951.1 CDS Dd1591_0590 NC_012912.1 671793 672782 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sea:SeAg_B4544 invertase; transposase IS116/IS110/IS902 family protein complement(671793..672782) Dickeya zeae Ech1591 8119873 YP_003002952.1 CDS leuD NC_012912.1 673170 673772 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(673170..673772) Dickeya zeae Ech1591 8119874 YP_003002953.1 CDS Dd1591_0592 NC_012912.1 673785 675185 R TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: yps:YPTB0670 isopropylmalate isomerase large subunit; 3-isopropylmalate dehydratase, large subunit complement(673785..675185) Dickeya zeae Ech1591 8119875 YP_003002954.1 CDS Dd1591_0593 NC_012912.1 675188 676279 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(675188..676279) Dickeya zeae Ech1591 8119876 YP_003002955.1 CDS Dd1591_0594 NC_012912.1 676279 677853 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(676279..677853) Dickeya zeae Ech1591 8119877 YP_003002956.1 CDS Dd1591_0595 NC_012912.1 678260 680065 D PFAM: AMP-dependent synthetase and ligase; KEGG: eca:ECA3830 putative AMP-binding protein; AMP-dependent synthetase and ligase 678260..680065 Dickeya zeae Ech1591 8119878 YP_003002957.1 CDS Dd1591_0596 NC_012912.1 680463 682184 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 680463..682184 Dickeya zeae Ech1591 8119879 YP_003002958.1 CDS ilvH NC_012912.1 682187 682678 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 682187..682678 Dickeya zeae Ech1591 8119880 YP_003002959.1 CDS Dd1591_0598 NC_012912.1 682922 683926 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 682922..683926 Dickeya zeae Ech1591 8119881 YP_003002960.1 CDS Dd1591_0599 NC_012912.1 684042 684503 R PFAM: protein of unknown function DUF1144; KEGG: eca:ECA3826 hypothetical protein; hypothetical protein complement(684042..684503) Dickeya zeae Ech1591 8119882 YP_003002961.1 CDS Dd1591_0600 NC_012912.1 684945 685160 R hypothetical protein complement(684945..685160) Dickeya zeae Ech1591 8119883 YP_003002962.1 CDS Dd1591_0601 NC_012912.1 685371 685829 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 685371..685829 Dickeya zeae Ech1591 8119884 YP_003002963.1 CDS mraW NC_012912.1 685832 686773 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: eca:ECA3823 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 685832..686773 Dickeya zeae Ech1591 8119885 YP_003002964.1 CDS Dd1591_0603 NC_012912.1 686770 687093 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 686770..687093 Dickeya zeae Ech1591 8119886 YP_003002965.1 CDS Dd1591_0604 NC_012912.1 687116 688879 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: eca:ECA3821 peptidoglycan synthetase; peptidoglycan glycosyltransferase 687116..688879 Dickeya zeae Ech1591 8119887 YP_003002966.1 CDS murE NC_012912.1 688866 690350 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 688866..690350 Dickeya zeae Ech1591 8119888 YP_003002967.1 CDS murF NC_012912.1 690347 691708 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: eca:ECA3819 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 690347..691708 Dickeya zeae Ech1591 8119889 YP_003002968.1 CDS mraY NC_012912.1 691702 692784 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 691702..692784 Dickeya zeae Ech1591 8119890 YP_003002969.1 CDS murD NC_012912.1 692787 694100 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 692787..694100 Dickeya zeae Ech1591 8119891 YP_003002970.1 CDS Dd1591_0609 NC_012912.1 694100 695302 D integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 694100..695302 Dickeya zeae Ech1591 8119892 YP_003002971.1 CDS murG NC_012912.1 695299 696390 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase 695299..696390 Dickeya zeae Ech1591 8119893 YP_003002972.1 CDS murC NC_012912.1 696442 697902 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 696442..697902 Dickeya zeae Ech1591 8119894 YP_003002973.1 CDS Dd1591_0612 NC_012912.1 697910 698062 D hypothetical protein 697910..698062 Dickeya zeae Ech1591 8119895 YP_003002974.1 CDS Dd1591_0613 NC_012912.1 698064 698918 D involved in septum formation; cell division protein FtsQ 698064..698918 Dickeya zeae Ech1591 8119896 YP_003002975.1 CDS ftsA NC_012912.1 698915 700171 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 698915..700171 Dickeya zeae Ech1591 8119897 YP_003002976.1 CDS Dd1591_0615 NC_012912.1 700245 701396 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 700245..701396 Dickeya zeae Ech1591 8119898 YP_003002977.1 CDS lpxC NC_012912.1 701492 702409 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 701492..702409 Dickeya zeae Ech1591 8119899 YP_003002978.1 CDS Dd1591_0617 NC_012912.1 702428 702952 R PFAM: protein of unknown function DUF721; KEGG: eca:ECA3808 hypothetical protein; hypothetical protein complement(702428..702952) Dickeya zeae Ech1591 8119900 YP_003002979.1 CDS Dd1591_0618 NC_012912.1 702980 703483 D secM translational pause allows for the initiation of secA translation; SecA regulator SecM 702980..703483 Dickeya zeae Ech1591 8119661 YP_003002980.1 CDS Dd1591_0619 NC_012912.1 703581 706274 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 703581..706274 Dickeya zeae Ech1591 8119662 YP_003002981.1 CDS Dd1591_0620 NC_012912.1 706344 706742 D TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: eca:ECA3805 nucleoside triphosphate pyrophosphohydrolase; nucleoside triphosphate pyrophosphohydrolase 706344..706742 Dickeya zeae Ech1591 8119663 YP_003002982.1 CDS Dd1591_0621 NC_012912.1 706841 707062 R PFAM: protein of unknown function DUF329; KEGG: spe:Spro_0772 hypothetical protein; hypothetical protein complement(706841..707062) Dickeya zeae Ech1591 8119664 YP_003002983.1 CDS Dd1591_0622 NC_012912.1 707071 707820 R PFAM: protein of unknown function DUF1342; KEGG: eca:ECA3803 hypothetical protein; hypothetical protein complement(707071..707820) Dickeya zeae Ech1591 8119665 YP_003002984.1 CDS Dd1591_0623 NC_012912.1 707813 708439 R KEGG: eca:ECA3802 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(707813..708439) Dickeya zeae Ech1591 8119666 YP_003002985.1 CDS Dd1591_0624 NC_012912.1 708605 709645 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 708605..709645 Dickeya zeae Ech1591 8119667 YP_003002986.1 CDS Dd1591_0625 NC_012912.1 709671 710876 R PFAM: type II secretion system protein; KEGG: eca:ECA3800 type IV pilin biogenesis protein; type IV pilin biogenesis protein complement(709671..710876) Dickeya zeae Ech1591 8119668 YP_003002987.1 CDS Dd1591_0626 NC_012912.1 710885 712306 R PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: eca:ECA3799 hypothetical protein; hypothetical protein complement(710885..712306) Dickeya zeae Ech1591 8119669 YP_003002988.1 CDS Dd1591_0627 NC_012912.1 712312 712755 R KEGG: eca:ECA3798 putative major pilin subunit; putative major pilin subunit complement(712312..712755) Dickeya zeae Ech1591 8119670 YP_003002989.1 CDS Dd1591_0628 NC_012912.1 713019 713909 R KEGG: eca:ECA3797 quinolinate phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(713019..713909) Dickeya zeae Ech1591 8119671 YP_003002990.1 CDS Dd1591_0629 NC_012912.1 714184 715047 R PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: eca:ECA3796 nucleoside-specific channel-forming protein; nucleoside-specific channel-forming protein Tsx complement(714184..715047) Dickeya zeae Ech1591 8119672 YP_003002991.1 CDS Dd1591_0630 NC_012912.1 715451 716011 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: eca:ECA3795 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase 715451..716011 Dickeya zeae Ech1591 8119673 YP_003002992.1 CDS Dd1591_0631 NC_012912.1 716018 716872 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 716018..716872 Dickeya zeae Ech1591 8119674 YP_003002993.1 CDS Dd1591_0632 NC_012912.1 716921 718267 R PFAM: amino acid permease-associated region; KEGG: eca:ECA3791 aromatic amino acid transport protein; amino acid permease-like protein complement(716921..718267) Dickeya zeae Ech1591 8119675 YP_003002994.1 CDS pdhR NC_012912.1 718916 719680 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 718916..719680 Dickeya zeae Ech1591 8119676 YP_003002995.1 CDS aceE NC_012912.1 719813 722476 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 719813..722476 Dickeya zeae Ech1591 8119677 YP_003002996.1 CDS aceF NC_012912.1 722490 724370 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 722490..724370 Dickeya zeae Ech1591 8119678 YP_003002997.1 CDS Dd1591_0636 NC_012912.1 724585 726009 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: esa:ESA_03220 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 724585..726009 Dickeya zeae Ech1591 8119679 YP_003002998.1 CDS Dd1591_0637 NC_012912.1 726198 727376 D PFAM: dienelactone hydrolase; KEGG: eca:ECA3785 hypothetical protein; dienelactone hydrolase 726198..727376 Dickeya zeae Ech1591 8119680 YP_003002999.1 CDS Dd1591_0638 NC_012912.1 727438 728769 R PFAM: MmgE/PrpD family protein; KEGG: eca:ECA3784 hypothetical protein; MmgE/PrpD family protein complement(727438..728769) Dickeya zeae Ech1591 8119681 YP_003003000.1 CDS Dd1591_0639 NC_012912.1 729213 731810 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 729213..731810 Dickeya zeae Ech1591 8119682 YP_003003001.1 CDS Dd1591_0640 NC_012912.1 731928 732290 D PFAM: conserved hypothetical protein; KEGG: eca:ECA3777 hypothetical protein; hypothetical protein 731928..732290 Dickeya zeae Ech1591 8119683 YP_003003002.1 CDS Dd1591_0641 NC_012912.1 732511 734124 D PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dia:Dtpsy_2395 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 732511..734124 Dickeya zeae Ech1591 8119684 YP_003003003.1 CDS Dd1591_0642 NC_012912.1 734147 734830 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: eca:ECA3767 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(734147..734830) Dickeya zeae Ech1591 8119685 YP_003003004.1 CDS Dd1591_0643 NC_012912.1 734836 735309 R PFAM: conserved hypothetical protein; KEGG: eca:ECA3766 hypothetical protein; hypothetical protein complement(734836..735309) Dickeya zeae Ech1591 8119686 YP_003003005.1 CDS Dd1591_0644 NC_012912.1 735477 736652 R KEGG: eca:ECA3765 hypothetical protein; hypothetical protein complement(735477..736652) Dickeya zeae Ech1591 8119687 YP_003003006.1 CDS Dd1591_0645 NC_012912.1 736659 738077 R PFAM: Na+/solute symporter; KEGG: eca:ECA3764 sodium:solute symporter; Na+/solute symporter complement(736659..738077) Dickeya zeae Ech1591 8119688 YP_003003007.1 CDS Dd1591_0646 NC_012912.1 738115 738999 R PFAM: dihydrodipicolinate synthetase; KEGG: eca:ECA3763 putative dihydrodipicolinate synthase; dihydrodipicolinate synthetase complement(738115..738999) Dickeya zeae Ech1591 8119689 YP_003003008.1 CDS Dd1591_0647 NC_012912.1 739082 740218 R PFAM: iron-containing alcohol dehydrogenase; KEGG: eca:ECA3762 putative alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(739082..740218) Dickeya zeae Ech1591 8119690 YP_003003009.1 CDS Dd1591_0648 NC_012912.1 740435 741721 D PFAM: type III effector Hrp-dependent outers; KEGG: eca:ECA3761 hypothetical protein; Hrp-dependent type III effector protein 740435..741721 Dickeya zeae Ech1591 8119691 YP_003003010.1 CDS pdxA NC_012912.1 741714 742694 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 2 741714..742694 Dickeya zeae Ech1591 8119692 YP_003003011.1 CDS Dd1591_0650 NC_012912.1 742719 743549 D PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: eca:ECA3759 DeoR family transcriptional regulator; DeoR family transcriptional regulator 742719..743549 Dickeya zeae Ech1591 8119693 YP_003003012.1 CDS Dd1591_0651 NC_012912.1 743824 744024 R hypothetical protein complement(743824..744024) Dickeya zeae Ech1591 8119694 YP_003003013.1 CDS Dd1591_0652 NC_012912.1 744021 745538 R PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: bha:BH3836 4-hydroxyphenylacetate-3-hydroxylase; 4-hydroxyphenylacetate 3-hydroxylase complement(744021..745538) Dickeya zeae Ech1591 8119695 YP_003003014.1 CDS Dd1591_0653 NC_012912.1 745902 746780 R PFAM: periplasmic solute binding protein; KEGG: ecp:ECP_3824 putative periplasmic binding protein; periplasmic solute binding protein complement(745902..746780) Dickeya zeae Ech1591 8119696 YP_003003015.1 CDS Dd1591_0654 NC_012912.1 746822 747676 R PFAM: ABC-3 protein; KEGG: ecp:ECP_3823 putative ABC-transporter membrane protein; ABC transporter complement(746822..747676) Dickeya zeae Ech1591 8119697 YP_003003016.1 CDS Dd1591_0655 NC_012912.1 747673 748392 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ecp:ECP_3822 putative ABC-transporter ATP-binding protein; ABC transporter complement(747673..748392) Dickeya zeae Ech1591 8119698 YP_003003017.1 CDS Dd1591_0656 NC_012912.1 748389 748493 R hypothetical protein complement(748389..748493) Dickeya zeae Ech1591 8119699 YP_003003018.1 CDS Dd1591_0657 NC_012912.1 748737 749648 R PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: eca:ECA3753 hypothetical protein; ATPase BadF/BadG/BcrA/BcrD type complement(748737..749648) Dickeya zeae Ech1591 8119700 YP_003003019.1 CDS Dd1591_0659 NC_012912.1 750236 751543 R PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA3751 extracellular solute-binding protein; extracellular solute-binding protein family 1 complement(750236..751543) Dickeya zeae Ech1591 8119702 YP_003003020.1 CDS Dd1591_0660 NC_012912.1 752381 754861 D KEGG: eca:ECA3750 hypothetical protein; hypothetical protein 752381..754861 Dickeya zeae Ech1591 8119703 YP_003003021.1 CDS Dd1591_0661 NC_012912.1 754863 755972 D PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3749 plant-inducible protein; glycosyl hydrolase family 88 754863..755972 Dickeya zeae Ech1591 8119704 YP_003003022.1 CDS Dd1591_0662 NC_012912.1 756020 757120 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: eca:ECA3748 ABC transporter, ATP-binding protein; ABC transporter 756020..757120 Dickeya zeae Ech1591 8119705 YP_003003023.1 CDS Dd1591_0663 NC_012912.1 757234 758235 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3747 ABC transporter, membrane spanning protein; binding-protein-dependent transport systems inner membrane component 757234..758235 Dickeya zeae Ech1591 8119706 YP_003003024.1 CDS Dd1591_0664 NC_012912.1 758248 759300 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3746 ABC transporter, membrane spanning protein; binding-protein-dependent transport systems inner membrane component 758248..759300 Dickeya zeae Ech1591 8119707 YP_003003025.1 CDS Dd1591_0665 NC_012912.1 759301 760332 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: eca:ECA3745 LacI family transcriptional regulator; LacI family transcriptional regulator 759301..760332 Dickeya zeae Ech1591 8119708 YP_003003026.1 CDS Dd1591_0666 NC_012912.1 760512 761513 D KEGG: mgm:Mmc1_0568 DNA replication and repair protein RecF; DNA replication and repair protein RecF 760512..761513 Dickeya zeae Ech1591 8119709 YP_003003027.1 CDS Dd1591_0667 NC_012912.1 761596 762633 D KEGG: stm:PSLT042 putative integrase protein; putative integrase protein 761596..762633 Dickeya zeae Ech1591 8119710 YP_003003028.1 CDS Dd1591_0668 NC_012912.1 762661 763209 D KEGG: mgm:Mmc1_0567 hypothetical protein; hypothetical protein 762661..763209 Dickeya zeae Ech1591 8119711 YP_003003029.1 CDS Dd1591_0669 NC_012912.1 763373 765481 R KEGG: sdn:Sden_2995 hypothetical protein; hypothetical protein complement(763373..765481) Dickeya zeae Ech1591 8119712 YP_003003030.1 CDS Dd1591_0670 NC_012912.1 765534 769280 R KEGG: ppd:Ppro_0363 hypothetical protein; hypothetical protein complement(765534..769280) Dickeya zeae Ech1591 8119713 YP_003003031.1 CDS Dd1591_0671 NC_012912.1 769277 771772 R KEGG: sdn:Sden_2998 hypothetical protein; hypothetical protein complement(769277..771772) Dickeya zeae Ech1591 8119714 YP_003003032.1 CDS Dd1591_0672 NC_012912.1 771775 772602 R KEGG: sdn:Sden_2999 hypothetical protein; hypothetical protein complement(771775..772602) Dickeya zeae Ech1591 8119715 YP_003003033.1 CDS Dd1591_0673 NC_012912.1 772664 776740 R KEGG: sdn:Sden_3000 hypothetical protein; hypothetical protein complement(772664..776740) Dickeya zeae Ech1591 8119716 YP_003003034.1 CDS Dd1591_0674 NC_012912.1 776800 777219 R PFAM: GPW/gp25 family protein; KEGG: sdn:Sden_3001 gpW/GP25; GPW/gp25 family protein complement(776800..777219) Dickeya zeae Ech1591 8119717 YP_003003035.1 CDS Dd1591_0675 NC_012912.1 777222 777521 R PFAM: PAAR repeat-containing protein; KEGG: sdn:Sden_3002 PaaR; PAAR repeat-containing protein complement(777222..777521) Dickeya zeae Ech1591 8119718 YP_003003036.1 CDS Dd1591_0676 NC_012912.1 777592 779382 R TIGRFAM: Rhs element Vgr protein; KEGG: sdn:Sden_3003 rhs element Vgr protein; Rhs element Vgr protein complement(777592..779382) Dickeya zeae Ech1591 8119719 YP_003003037.1 CDS Dd1591_0677 NC_012912.1 779395 780042 R PFAM: Peptidoglycan-binding LysM; KEGG: sdn:Sden_3004 hypothetical protein; peptidoglycan-binding LysM complement(779395..780042) Dickeya zeae Ech1591 8119720 YP_003003038.1 CDS Dd1591_0678 NC_012912.1 780058 780237 R hypothetical protein complement(780058..780237) Dickeya zeae Ech1591 8119721 YP_003003039.1 CDS Dd1591_0679 NC_012912.1 780265 780723 R TIGRFAM: conserved hypothetical protein; KEGG: sdn:Sden_3005 hypothetical protein; hypothetical protein complement(780265..780723) Dickeya zeae Ech1591 8119722 YP_003003040.1 CDS Dd1591_0680 NC_012912.1 780830 781300 R TIGRFAM: conserved hypothetical protein; KEGG: sdn:Sden_3006 hypothetical protein; hypothetical protein complement(780830..781300) Dickeya zeae Ech1591 8119723 YP_003003041.1 CDS Dd1591_0681 NC_012912.1 781396 782949 R KEGG: sdn:Sden_3007 hypothetical protein; hypothetical protein complement(781396..782949) Dickeya zeae Ech1591 8119724 YP_003003042.1 CDS Dd1591_0682 NC_012912.1 783061 783873 R KEGG: ppd:Ppro_0374 hypothetical protein; hypothetical protein complement(783061..783873) Dickeya zeae Ech1591 8119725 YP_003003043.1 CDS Dd1591_0683 NC_012912.1 783879 784451 R KEGG: cja:CJA_3668 hypothetical protein; hypothetical protein complement(783879..784451) Dickeya zeae Ech1591 8119726 YP_003003044.1 CDS Dd1591_0684 NC_012912.1 784666 785157 D KEGG: yps:YPTB2203 hypothetical protein; hypothetical protein 784666..785157 Dickeya zeae Ech1591 8119727 YP_003003045.1 CDS Dd1591_0685 NC_012912.1 785296 785883 R KEGG: efe:EFER_2439 hypothetical protein; hypothetical protein complement(785296..785883) Dickeya zeae Ech1591 8119728 YP_003003046.1 CDS Dd1591_0686 NC_012912.1 786058 786687 D KEGG: dac:Daci_3890 hypothetical protein; hypothetical protein 786058..786687 Dickeya zeae Ech1591 8119729 YP_003003047.1 CDS Dd1591_0687 NC_012912.1 786722 787300 D PFAM: flavin reductase domain protein FMN-binding; KEGG: pmy:Pmen_4577 flavin reductase domain-containing protein; flavin reductase domain-containing protein FMN-binding 786722..787300 Dickeya zeae Ech1591 8119730 YP_003003048.1 CDS Dd1591_0688 NC_012912.1 787361 788050 R KEGG: GH16670 gene product from transcript GH16670-RA; hypothetical protein complement(787361..788050) Dickeya zeae Ech1591 8119731 YP_003003049.1 CDS Dd1591_0689 NC_012912.1 788107 788319 R hypothetical protein complement(788107..788319) Dickeya zeae Ech1591 8119732 YP_003003050.1 CDS Dd1591_0690 NC_012912.1 788504 790384 R KEGG: bpt:Bpet4285 mobile mitochondrial group II intron of COX1 which IS involved in pre-mRNA splicing and in deletion of introns from mitochondrial DNA; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); intron maturase type II; SMART: HNH nuclease; RNA-directed DNA polymerase complement(788504..790384) Dickeya zeae Ech1591 8119733 YP_003003051.1 CDS Dd1591_0691 NC_012912.1 790998 791546 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: efe:EFER_4161 single-stranded DNA-binding protein; single-strand binding protein complement(790998..791546) Dickeya zeae Ech1591 8119734 YP_003003052.1 CDS uvrA NC_012912.1 791789 794620 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 791789..794620 Dickeya zeae Ech1591 8119735 YP_003003053.1 CDS Dd1591_0693 NC_012912.1 794703 795122 D PFAM: protein of unknown function UPF0047; KEGG: eca:ECA3688 hypothetical protein; hypothetical protein 794703..795122 Dickeya zeae Ech1591 8119736 YP_003003054.1 CDS Dd1591_0694 NC_012912.1 795167 796777 R KEGG: eca:ECA3374 putative signaling membrane protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(795167..796777) Dickeya zeae Ech1591 8119737 YP_003003055.1 CDS Dd1591_0695 NC_012912.1 797748 799433 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA0183 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 797748..799433 Dickeya zeae Ech1591 8119738 YP_003003056.1 CDS Dd1591_0696 NC_012912.1 801338 802339 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: eca:ECA3679 hypothetical protein; CRISPR-associated protein Cas1 801338..802339 Dickeya zeae Ech1591 8119739 YP_003003057.1 CDS Dd1591_0697 NC_012912.1 802336 805617 D TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: eca:ECA3680 hypothetical protein; Cas3 family CRISPR-associated helicase 802336..805617 Dickeya zeae Ech1591 8119740 YP_003003058.1 CDS Dd1591_0698 NC_012912.1 806344 807681 D TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: eca:ECA3681 hypothetical protein; Csy1 family CRISPR-associated protein 806344..807681 Dickeya zeae Ech1591 8119421 YP_003003059.1 CDS Dd1591_0699 NC_012912.1 807678 808619 D TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: eca:ECA3682 hypothetical protein; Csy2 family CRISPR-associated protein 807678..808619 Dickeya zeae Ech1591 8119422 YP_003003060.1 CDS Dd1591_0700 NC_012912.1 808636 809643 D TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: eca:ECA3683 hypothetical protein; Csy3 family CRISPR-associated protein 808636..809643 Dickeya zeae Ech1591 8119423 YP_003003061.1 CDS Dd1591_0701 NC_012912.1 809648 810202 D TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: eca:ECA3684 hypothetical protein; Csy4 family CRISPR-associated protein 809648..810202 Dickeya zeae Ech1591 8119424 YP_003003062.1 CDS Dd1591_0702 NC_012912.1 813343 814536 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(813343..814536) Dickeya zeae Ech1591 8119425 YP_003003063.1 CDS Dd1591_0703 NC_012912.1 814577 815191 R PFAM: protein of unknown function DUF161; KEGG: eca:ECA3669 hypothetical protein; hypothetical protein complement(814577..815191) Dickeya zeae Ech1591 8119426 YP_003003064.1 CDS Dd1591_0704 NC_012912.1 815442 815918 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: eca:ECA3668 transcription regulator AsnC; AsnC family transcriptional regulator complement(815442..815918) Dickeya zeae Ech1591 8119427 YP_003003065.1 CDS Dd1591_0705 NC_012912.1 816292 817665 D PFAM: amino acid permease-associated region; KEGG: kpe:KPK_3038 putative aromatic amino acid transport protein AroP; amino acid permease-like protein 816292..817665 Dickeya zeae Ech1591 8119428 YP_003003066.1 CDS Dd1591_0706 NC_012912.1 819371 820138 D KEGG: spe:Spro_4447 arogenate dehydratase; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; Prephenate dehydratase 819371..820138 Dickeya zeae Ech1591 8119429 YP_003003067.1 CDS Dd1591_0707 NC_012912.1 820382 820630 D PFAM: protein of unknown function DUF1471; KEGG: plu:plu4502 hypothetical protein; hypothetical protein 820382..820630 Dickeya zeae Ech1591 8119430 YP_003003068.1 CDS alr NC_012912.1 820789 821865 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(820789..821865) Dickeya zeae Ech1591 8119431 YP_003003069.1 CDS Dd1591_0709 NC_012912.1 821956 823359 R KEGG: eca:ECA3664 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase complement(821956..823359) Dickeya zeae Ech1591 8119432 YP_003003070.1 CDS Dd1591_0710 NC_012912.1 823482 824477 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eca:ECA3663 quinone oxidoreductase, NADPH-dependent; quinone oxidoreductase, NADPH-dependent 823482..824477 Dickeya zeae Ech1591 8119433 YP_003003071.1 CDS Dd1591_0711 NC_012912.1 825030 826409 D PFAM: cytochrome P450; KEGG: eca:ECA3662 putative cytochrome; cytochrome P450 825030..826409 Dickeya zeae Ech1591 8119434 YP_003003072.1 CDS pspG NC_012912.1 827031 827306 R coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G complement(827031..827306) Dickeya zeae Ech1591 8119435 YP_003003073.1 CDS Dd1591_0713 NC_012912.1 827497 828531 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: eca:ECA3660 tRNA-dihydrouridine synthase A; TIM-barrel protein, yjbN family complement(827497..828531) Dickeya zeae Ech1591 8119436 YP_003003074.1 CDS Dd1591_0714 NC_012912.1 828959 829531 D KEGG: cja:CJA_3633 hypothetical protein; hypothetical protein 828959..829531 Dickeya zeae Ech1591 8119437 YP_003003075.1 CDS Dd1591_0716 NC_012912.1 829960 830844 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpe:KPK_3090 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(829960..830844) Dickeya zeae Ech1591 8119439 YP_003003076.1 CDS Dd1591_0717 NC_012912.1 831056 832192 D KEGG: ent:Ent638_2117 hypothetical protein; hypothetical protein 831056..832192 Dickeya zeae Ech1591 8119440 YP_003003077.1 CDS Dd1591_0718 NC_012912.1 832289 832798 D KEGG: ank:AnaeK_3353 hypothetical protein; hypothetical protein 832289..832798 Dickeya zeae Ech1591 8119441 YP_003003078.1 CDS Dd1591_0719 NC_012912.1 832835 834037 D PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_0782 major facilitator superfamily MFS_1; major facilitator superfamily protein 832835..834037 Dickeya zeae Ech1591 8119442 YP_003003079.1 CDS Dd1591_0720 NC_012912.1 834091 835050 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_B2748 LysR family transcriptional regulator; LysR family transcriptional regulator complement(834091..835050) Dickeya zeae Ech1591 8119443 YP_003003080.1 CDS Dd1591_0721 NC_012912.1 835115 835225 D hypothetical protein 835115..835225 Dickeya zeae Ech1591 8119444 YP_003003081.1 CDS Dd1591_0722 NC_012912.1 835289 835597 D PFAM: protein of unknown function DUF1330; KEGG: msu:MS1420 hypothetical protein; hypothetical protein 835289..835597 Dickeya zeae Ech1591 8119445 YP_003003082.1 CDS Dd1591_0723 NC_012912.1 835630 836166 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: msu:MS2162 MdaB protein; NAD(P)H dehydrogenase (quinone) 835630..836166 Dickeya zeae Ech1591 8119446 YP_003003083.1 CDS Dd1591_0724 NC_012912.1 836280 836987 R PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: spe:Spro_4489 GntR family transcriptional regulator; GntR family transcriptional regulator complement(836280..836987) Dickeya zeae Ech1591 8119447 YP_003003084.1 CDS Dd1591_0725 NC_012912.1 837193 838245 D PFAM: extracellular solute-binding protein family 1; KEGG: spe:Spro_4488 extracellular solute-binding protein; extracellular solute-binding protein family 1 837193..838245 Dickeya zeae Ech1591 8119448 YP_003003085.1 CDS Dd1591_0726 NC_012912.1 838265 839089 D KEGG: eta:ETA_31180 hypothetical protein; hypothetical protein 838265..839089 Dickeya zeae Ech1591 8119449 YP_003003086.1 CDS Dd1591_0727 NC_012912.1 839086 839928 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_4486 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 839086..839928 Dickeya zeae Ech1591 8119450 YP_003003087.1 CDS Dd1591_0728 NC_012912.1 839915 840007 D hypothetical protein 839915..840007 Dickeya zeae Ech1591 8119451 YP_003003088.1 CDS Dd1591_0729 NC_012912.1 839994 840779 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eta:ETA_31160 ABC transporter, permease component, putative fragment; binding-protein-dependent transport systems inner membrane component 839994..840779 Dickeya zeae Ech1591 8119452 YP_003003089.1 CDS Dd1591_0730 NC_012912.1 840781 841773 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: spe:Spro_4484 ABC transporter-related protein; ABC transporter 840781..841773 Dickeya zeae Ech1591 8119453 YP_003003090.1 CDS Dd1591_0731 NC_012912.1 841880 843220 R PFAM: filamentation induced by cAMP protein Fic; KEGG: plu:plu2421 hypothetical protein; filamentation induced by cAMP protein Fic complement(841880..843220) Dickeya zeae Ech1591 8119454 YP_003003091.1 CDS Dd1591_0732 NC_012912.1 843297 844226 R activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator complement(843297..844226) Dickeya zeae Ech1591 8119455 YP_003003092.1 CDS Dd1591_0733 NC_012912.1 844339 845601 D catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 844339..845601 Dickeya zeae Ech1591 8119456 YP_003003093.1 CDS Dd1591_0734 NC_012912.1 845617 846627 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: spe:Spro_3834 LacI family transcription regulator; LacI family transcriptional regulator complement(845617..846627) Dickeya zeae Ech1591 8119457 YP_003003094.1 CDS Dd1591_0735 NC_012912.1 846754 847080 R PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: eca:ECA3648 PTS system, cellobiose-specific IIA component; phosphotransferase system PTS lactose/cellobiose-specific IIA subunit complement(846754..847080) Dickeya zeae Ech1591 8119458 YP_003003095.1 CDS Dd1591_0736 NC_012912.1 847314 848660 D KEGG: eca:ECA3647 PTS system, lichenan-specific IIC component; TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC; PTS system lactose/cellobiose family transporter subunit IIC 847314..848660 Dickeya zeae Ech1591 8119459 YP_003003096.1 CDS Dd1591_0737 NC_012912.1 848699 850135 D PFAM: glycoside hydrolase family 1; KEGG: eca:ECA3646 putative 6-phospho-beta-glucosidase; glycoside hydrolase family 1 848699..850135 Dickeya zeae Ech1591 8119460 YP_003003097.1 CDS Dd1591_0738 NC_012912.1 850144 850461 D PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA3645 PTS system, lichenan-specific IIB component; phosphotransferase system lactose/cellobiose-specific IIB subunit 850144..850461 Dickeya zeae Ech1591 8119461 YP_003003098.1 CDS Dd1591_0739 NC_012912.1 850632 851399 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: eca:ECA3644 GntR family transcriptional regulator; GntR family transcriptional regulator 850632..851399 Dickeya zeae Ech1591 8119462 YP_003003099.1 CDS Dd1591_0740 NC_012912.1 851411 851905 D PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3643 GnaT-family acetyltransferase; GCN5-related N-acetyltransferase 851411..851905 Dickeya zeae Ech1591 8119463 YP_003003100.1 CDS Dd1591_0741 NC_012912.1 852670 853137 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: plu:plu0404 hypothetical protein; Hcp1 family type VI secretion system effector 852670..853137 Dickeya zeae Ech1591 8119464 YP_003003101.1 CDS Dd1591_0742 NC_012912.1 853487 854014 D KEGG: ypy:YPK_2298 hypothetical protein; hypothetical protein 853487..854014 Dickeya zeae Ech1591 8119465 YP_003003102.1 CDS Dd1591_0743 NC_012912.1 854885 855553 D KEGG: rpt:Rpal_4354 hypothetical protein; hypothetical protein 854885..855553 Dickeya zeae Ech1591 8119466 YP_003003103.1 CDS Dd1591_0744 NC_012912.1 855546 856262 D PFAM: filamentation induced by cAMP protein Fic; KEGG: rpb:RPB_3724 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 855546..856262 Dickeya zeae Ech1591 8119467 YP_003003104.1 CDS Dd1591_0745 NC_012912.1 856514 857527 R controls transcription of galETKM; DNA-binding transcriptional regulator GalR complement(856514..857527) Dickeya zeae Ech1591 8119468 YP_003003105.1 CDS Dd1591_0746 NC_012912.1 858343 859212 D PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: esa:ESA_02544 hypothetical protein; transcriptional antiterminator BglG 858343..859212 Dickeya zeae Ech1591 8119469 YP_003003106.1 CDS Dd1591_0747 NC_012912.1 859387 861303 D TIGRFAM: PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: esa:ESA_02545 hypothetical protein; PTS system beta-glucoside-specific transporter subunit IIABC 859387..861303 Dickeya zeae Ech1591 8119470 YP_003003107.1 CDS Dd1591_0748 NC_012912.1 861320 862810 D PFAM: glycoside hydrolase family 1; KEGG: esa:ESA_02546 hypothetical protein; glycoside hydrolase family 1 861320..862810 Dickeya zeae Ech1591 8119471 YP_003003108.1 CDS Dd1591_0749 NC_012912.1 862866 864263 D PFAM: glycoside hydrolase family 1; KEGG: esa:ESA_02547 hypothetical protein; glycoside hydrolase family 1 862866..864263 Dickeya zeae Ech1591 8119472 YP_003003109.1 CDS Dd1591_0750 NC_012912.1 864563 866761 D Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 864563..866761 Dickeya zeae Ech1591 8119473 YP_003003110.1 CDS Dd1591_0751 NC_012912.1 866758 868005 D PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA3640 hypothetical protein; lysophospholipid transporter LplT 866758..868005 Dickeya zeae Ech1591 8119474 YP_003003111.1 CDS Dd1591_0752 NC_012912.1 868017 868472 D PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3639 putative acyltransferase; GCN5-related N-acetyltransferase 868017..868472 Dickeya zeae Ech1591 8119475 YP_003003112.1 CDS Dd1591_0754 NC_012912.1 868943 870334 D KEGG: yen:YE1746 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor diguanylate cyclase 868943..870334 Dickeya zeae Ech1591 8119477 YP_003003113.1 CDS Dd1591_0755 NC_012912.1 870363 871502 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(870363..871502) Dickeya zeae Ech1591 8119478 YP_003003114.1 CDS Dd1591_0756 NC_012912.1 871495 872088 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(871495..872088) Dickeya zeae Ech1591 8119479 YP_003003115.1 CDS Dd1591_0757 NC_012912.1 872135 872437 R PFAM: protein of unknown function DUF167; KEGG: spe:Spro_4033 hypothetical protein; hypothetical protein complement(872135..872437) Dickeya zeae Ech1591 8119480 YP_003003116.1 CDS Dd1591_0758 NC_012912.1 872422 872976 R PFAM: protein of unknown function YGGT; KEGG: eca:ECA3629 hypothetical protein; hypothetical protein complement(872422..872976) Dickeya zeae Ech1591 8119481 YP_003003117.1 CDS Dd1591_0759 NC_012912.1 873024 873845 R KEGG: eca:ECA3628 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(873024..873845) Dickeya zeae Ech1591 8119482 YP_003003118.1 CDS Dd1591_0760 NC_012912.1 873879 874604 R PFAM: alanine racemase domain protein; KEGG: eca:ECA3627 putative alanine racemase; alanine racemase domain-containing protein complement(873879..874604) Dickeya zeae Ech1591 8119483 YP_003003119.1 CDS Dd1591_0761 NC_012912.1 874626 875648 D KEGG: eca:ECA3626 putative type II/IV secretion system protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 874626..875648 Dickeya zeae Ech1591 8119484 YP_003003120.1 CDS Dd1591_0762 NC_012912.1 875671 877740 R KEGG: sse:Ssed_3337 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase complement(875671..877740) Dickeya zeae Ech1591 8119485 YP_003003121.1 CDS Dd1591_0763 NC_012912.1 878125 879378 R PFAM: Amidohydrolase 3; amidohydrolase; KEGG: bcj:BCAM1457 cytosine deaminase; Cytosine deaminase complement(878125..879378) Dickeya zeae Ech1591 8119486 YP_003003122.1 CDS Dd1591_0764 NC_012912.1 879392 880327 R PFAM: helix-turn-helix Fis-type; KEGG: bte:BTH_II1640 DNA-binding protein; putative PucR family transcriptional regulator complement(879392..880327) Dickeya zeae Ech1591 8119487 YP_003003123.1 CDS Dd1591_0765 NC_012912.1 880629 882215 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA3624 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(880629..882215) Dickeya zeae Ech1591 8119488 YP_003003124.1 CDS Dd1591_0766 NC_012912.1 882564 882989 D negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 882564..882989 Dickeya zeae Ech1591 8119489 YP_003003125.1 CDS Dd1591_0767 NC_012912.1 883030 885498 D 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 883030..885498 Dickeya zeae Ech1591 8119490 YP_003003126.1 CDS Dd1591_0768 NC_012912.1 885587 886321 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 885587..886321 Dickeya zeae Ech1591 8119491 YP_003003127.1 CDS Dd1591_0769 NC_012912.1 886371 887888 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA0091 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(886371..887888) Dickeya zeae Ech1591 8119492 YP_003003128.1 CDS Dd1591_0770 NC_012912.1 888513 888788 R KEGG: gsu:GSU0757 putative lipoprotein; putative lipoprotein complement(888513..888788) Dickeya zeae Ech1591 8119493 YP_003003129.1 CDS Dd1591_0771 NC_012912.1 888840 889208 R in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; putative biofilm stress and motility protein A complement(888840..889208) Dickeya zeae Ech1591 8119494 YP_003003130.1 CDS Dd1591_0772 NC_012912.1 889375 891315 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA3615 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(889375..891315) Dickeya zeae Ech1591 8119495 YP_003003131.1 CDS Dd1591_0773 NC_012912.1 891541 892290 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 891541..892290 Dickeya zeae Ech1591 8119496 YP_003003132.1 CDS rpsF NC_012912.1 892500 892892 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 892500..892892 Dickeya zeae Ech1591 8119497 YP_003003133.1 CDS Dd1591_0775 NC_012912.1 892898 893218 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 892898..893218 Dickeya zeae Ech1591 8119498 YP_003003134.1 CDS rpsR NC_012912.1 893223 893450 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 893223..893450 Dickeya zeae Ech1591 8119499 YP_003003135.1 CDS rplI NC_012912.1 893492 893941 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 893492..893941 Dickeya zeae Ech1591 8119500 YP_003003136.1 CDS Dd1591_0778 NC_012912.1 894060 894434 D PFAM: protein of unknown function DUF488; KEGG: eca:ECA3609 hypothetical protein; hypothetical protein 894060..894434 Dickeya zeae Ech1591 8120594 YP_003003137.1 CDS Dd1591_0779 NC_012912.1 894418 895122 R PFAM: Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: eca:ECA3608 hypothetical protein; Opacity-associated protein A complement(894418..895122) Dickeya zeae Ech1591 8120595 YP_003003138.1 CDS Dd1591_0780 NC_012912.1 895348 895968 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 895348..895968 Dickeya zeae Ech1591 8120596 YP_003003139.1 CDS Dd1591_0781 NC_012912.1 896281 896646 D KEGG: spe:Spro_3414 hypothetical protein; hypothetical protein 896281..896646 Dickeya zeae Ech1591 8120597 YP_003003140.1 CDS Dd1591_0782 NC_012912.1 896743 897408 R Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein complement(896743..897408) Dickeya zeae Ech1591 8120598 YP_003003141.1 CDS cpdB NC_012912.1 897541 899487 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein complement(897541..899487) Dickeya zeae Ech1591 8120599 YP_003003142.1 CDS Dd1591_0784 NC_012912.1 899720 900460 D catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase 899720..900460 Dickeya zeae Ech1591 8120600 YP_003003143.1 CDS Dd1591_0785 NC_012912.1 900902 901108 D PFAM: protein of unknown function DUF1107; KEGG: eca:ECA3599 hypothetical protein; hypothetical protein 900902..901108 Dickeya zeae Ech1591 8120601 YP_003003144.1 CDS Dd1591_0786 NC_012912.1 901563 902879 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: eca:ECA3598 hypothetical protein; hypothetical protein complement(901563..902879) Dickeya zeae Ech1591 8120602 YP_003003145.1 CDS Dd1591_0787 NC_012912.1 903018 903659 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(903018..903659) Dickeya zeae Ech1591 8120603 YP_003003146.1 CDS Dd1591_0788 NC_012912.1 903994 905778 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: eca:ECA3596 hypothetical protein; surface antigen (D15) 903994..905778 Dickeya zeae Ech1591 8120604 YP_003003147.1 CDS Dd1591_0789 NC_012912.1 905784 909524 D PFAM: protein of unknown function DUF490; KEGG: eca:ECA3595 hypothetical protein; hypothetical protein 905784..909524 Dickeya zeae Ech1591 8120605 YP_003003148.1 CDS Dd1591_0790 NC_012912.1 909527 909889 D PFAM: AIG2 family protein; KEGG: plu:plu4552 hypothetical protein; AIG2 family protein 909527..909889 Dickeya zeae Ech1591 8120606 YP_003003149.1 CDS Dd1591_0791 NC_012912.1 910022 910552 R PFAM: Inorganic pyrophosphatase; KEGG: spe:Spro_0462 inorganic pyrophosphatase; Inorganic diphosphatase complement(910022..910552) Dickeya zeae Ech1591 8120607 YP_003003150.1 CDS Dd1591_0792 NC_012912.1 910858 912486 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA3592 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 910858..912486 Dickeya zeae Ech1591 8120608 YP_003003151.1 CDS Dd1591_0793 NC_012912.1 912540 913181 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(912540..913181) Dickeya zeae Ech1591 8120609 YP_003003152.1 CDS Dd1591_0794 NC_012912.1 913289 913651 D KEGG: eca:ECA3590 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; dihydroneopterin aldolase 913289..913651 Dickeya zeae Ech1591 8120610 YP_003003153.1 CDS Dd1591_0795 NC_012912.1 913824 914645 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 913824..914645 Dickeya zeae Ech1591 8120611 YP_003003154.1 CDS Dd1591_0796 NC_012912.1 914690 915937 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: eca:ECA3588 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(914690..915937) Dickeya zeae Ech1591 8120612 YP_003003155.1 CDS Dd1591_0797 NC_012912.1 916155 916778 R SMART: SH3 domain protein; KEGG: eca:ECA3587 putative signal transduction protein; putative signal transduction protein complement(916155..916778) Dickeya zeae Ech1591 8120613 YP_003003156.1 CDS Dd1591_0798 NC_012912.1 917067 918398 D PFAM: adenylate cyclase; KEGG: eca:ECA3586 hypothetical protein; adenylate cyclase 917067..918398 Dickeya zeae Ech1591 8120614 YP_003003157.1 CDS Dd1591_0799 NC_012912.1 918433 921333 D PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; KEGG: eca:ECA3585 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; (Glutamate--ammonia-ligase) adenylyltransferase 918433..921333 Dickeya zeae Ech1591 8120615 YP_003003158.1 CDS Dd1591_0800 NC_012912.1 921445 922872 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 921445..922872 Dickeya zeae Ech1591 8120616 YP_003003159.1 CDS ligA NC_012912.1 922884 924932 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 922884..924932 Dickeya zeae Ech1591 8120617 YP_003003160.1 CDS Dd1591_0802 NC_012912.1 924939 925160 D KEGG: eca:ECA3582 hypothetical protein; hypothetical protein 924939..925160 Dickeya zeae Ech1591 8120618 YP_003003161.1 CDS Dd1591_0803 NC_012912.1 925384 925746 R KEGG: eca:ECA3581 hypothetical protein; hypothetical protein complement(925384..925746) Dickeya zeae Ech1591 8120619 YP_003003162.1 CDS Dd1591_0804 NC_012912.1 926174 926506 R KEGG: eca:ECA3581 hypothetical protein; hypothetical protein complement(926174..926506) Dickeya zeae Ech1591 8120620 YP_003003163.1 CDS Dd1591_0805 NC_012912.1 926666 928201 R KEGG: eca:ECA3579 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(926666..928201) Dickeya zeae Ech1591 8120621 YP_003003164.1 CDS Dd1591_0806 NC_012912.1 928891 930465 R KEGG: eca:ECA3578 D-galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase complement(928891..930465) Dickeya zeae Ech1591 8120622 YP_003003165.1 CDS Dd1591_0807 NC_012912.1 931080 932432 D TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: eca:ECA3577 glucarate transporter; d-galactonate transporter 931080..932432 Dickeya zeae Ech1591 8120623 YP_003003166.1 CDS Dd1591_0808 NC_012912.1 932429 933814 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA3576 glucarate dehydratase; Glucarate dehydratase 932429..933814 Dickeya zeae Ech1591 8120624 YP_003003167.1 CDS Dd1591_0809 NC_012912.1 933830 935170 D KEGG: eca:ECA3575 glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 933830..935170 Dickeya zeae Ech1591 8120625 YP_003003168.1 CDS Dd1591_0810 NC_012912.1 935276 936046 D cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 935276..936046 Dickeya zeae Ech1591 8120626 YP_003003169.1 CDS garR NC_012912.1 936121 937005 D catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 936121..937005 Dickeya zeae Ech1591 8120627 YP_003003170.1 CDS Dd1591_0812 NC_012912.1 937110 938252 D KEGG: eca:ECA3572 glycerate kinase 2; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; glycerate kinase 937110..938252 Dickeya zeae Ech1591 8120628 YP_003003171.1 CDS Dd1591_0813 NC_012912.1 938363 941131 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(938363..941131) Dickeya zeae Ech1591 8120629 YP_003003172.1 CDS rumA NC_012912.1 941192 942526 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 941192..942526 Dickeya zeae Ech1591 8120630 YP_003003173.1 CDS relA NC_012912.1 942536 944773 D (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 942536..944773 Dickeya zeae Ech1591 8120631 YP_003003174.1 CDS mazG NC_012912.1 944841 945638 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 944841..945638 Dickeya zeae Ech1591 8120632 YP_003003175.1 CDS pyrG NC_012912.1 945865 947502 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 945865..947502 Dickeya zeae Ech1591 8120633 YP_003003176.1 CDS eno NC_012912.1 947600 948898 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 947600..948898 Dickeya zeae Ech1591 8120634 YP_003003177.1 CDS Dd1591_0819 NC_012912.1 949422 950996 D KEGG: eca:ECA3560 oligogalacturonide transporter; oligogalacturonide transporter 949422..950996 Dickeya zeae Ech1591 8120635 YP_003003178.1 CDS Dd1591_0820 NC_012912.1 951090 952229 D PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein; glycosyl hydrolase family 88 951090..952229 Dickeya zeae Ech1591 8120636 YP_003003179.1 CDS Dd1591_0821 NC_012912.1 952299 953273 R PFAM: beta-lactamase domain protein; KEGG: eca:ECA3555 metallo hydrolase; beta-lactamase domain-containing protein complement(952299..953273) Dickeya zeae Ech1591 8120637 YP_003003180.1 CDS Dd1591_0822 NC_012912.1 953495 954166 D KEGG: eca:ECA3554 hypothetical protein; hypothetical protein 953495..954166 Dickeya zeae Ech1591 8120638 YP_003003181.1 CDS Dd1591_0823 NC_012912.1 954203 954571 R TIGRFAM: 6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: eca:ECA3553 putative 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl tetrahydropterin synthase complement(954203..954571) Dickeya zeae Ech1591 8120639 YP_003003182.1 CDS Dd1591_0824 NC_012912.1 954701 956035 R PFAM: glycoside hydrolase family 28; KEGG: eca:ECA3552 putative polygalacturonase; glycoside hydrolase family 28 complement(954701..956035) Dickeya zeae Ech1591 8120640 YP_003003183.1 CDS Dd1591_0825 NC_012912.1 956572 957861 D PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA3551 periplasmic binding protein precursor; extracellular solute-binding protein family 1 956572..957861 Dickeya zeae Ech1591 8120641 YP_003003184.1 CDS Dd1591_0826 NC_012912.1 957879 959588 R KEGG: eca:ECA3550 hypothetical protein; hypothetical protein complement(957879..959588) Dickeya zeae Ech1591 8120642 YP_003003185.1 CDS Dd1591_0827 NC_012912.1 959989 961812 D TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: eca:ECA3547 sulfite reductase subunit alpha; sulfite reductase (NADPH) flavoprotein, alpha chain 959989..961812 Dickeya zeae Ech1591 8120643 YP_003003186.1 CDS Dd1591_0828 NC_012912.1 961812 963527 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 961812..963527 Dickeya zeae Ech1591 8120644 YP_003003187.1 CDS Dd1591_0829 NC_012912.1 963540 964274 D TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: eca:ECA3545 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 963540..964274 Dickeya zeae Ech1591 8120645 YP_003003188.1 CDS Dd1591_0830 NC_012912.1 964604 966025 D TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: eca:ECA3544 siroheme synthase [includes: uroporphyrin-III C-methyltransferase; precorrin-2 oxidase; ferrochelatase]; uroporphyrin-III C-methyltransferase 964604..966025 Dickeya zeae Ech1591 8120646 YP_003003189.1 CDS Dd1591_0831 NC_012912.1 966036 966944 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 966036..966944 Dickeya zeae Ech1591 8120647 YP_003003190.1 CDS cysN NC_012912.1 966956 968383 D may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 966956..968383 Dickeya zeae Ech1591 8120648 YP_003003191.1 CDS Dd1591_0833 NC_012912.1 968385 968999 D KEGG: yps:YPTB0767 adenylylsulfate kinase; TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase; adenylylsulfate kinase 968385..968999 Dickeya zeae Ech1591 8120649 YP_003003192.1 CDS Dd1591_0834 NC_012912.1 969154 969504 D KEGG: eca:ECA3540 hypothetical protein; hypothetical protein 969154..969504 Dickeya zeae Ech1591 8120650 YP_003003193.1 CDS ftsB NC_012912.1 969725 970078 D forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 969725..970078 Dickeya zeae Ech1591 8120651 YP_003003194.1 CDS Dd1591_0836 NC_012912.1 970081 970788 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: eca:ECA3535 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 970081..970788 Dickeya zeae Ech1591 8120652 YP_003003195.1 CDS ispF NC_012912.1 970813 971310 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 970813..971310 Dickeya zeae Ech1591 8120653 YP_003003196.1 CDS truD NC_012912.1 971304 972362 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 971304..972362 Dickeya zeae Ech1591 8120654 YP_003003197.1 CDS pcm NC_012912.1 972479 973105 D catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 972479..973105 Dickeya zeae Ech1591 8120655 YP_003003198.1 CDS Dd1591_0840 NC_012912.1 973427 974641 D PFAM: Peptidase M23; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: eca:ECA3531 lipoprotein NlpD; peptidase M23 973427..974641 Dickeya zeae Ech1591 8120656 YP_003003199.1 CDS Dd1591_0841 NC_012912.1 974695 975687 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 974695..975687 Dickeya zeae Ech1591 8120657 YP_003003200.1 CDS Dd1591_0842 NC_012912.1 975764 977482 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(975764..977482) Dickeya zeae Ech1591 8120658 YP_003003201.1 CDS Dd1591_0843 NC_012912.1 977598 978305 R PFAM: protein of unknown function UPF0066; KEGG: yen:YE3257 hypothetical protein; hypothetical protein complement(977598..978305) Dickeya zeae Ech1591 8120659 YP_003003202.1 CDS rcsF NC_012912.1 978302 978709 R KEGG: eca:ECA3527 outer membrane lipoprotein; outer membrane lipoprotein complement(978302..978709) Dickeya zeae Ech1591 8120660 YP_003003203.1 CDS metQ NC_012912.1 978824 979639 R TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: eca:ECA3526 DL-methionine transporter substrate-binding subunit; DL-methionine transporter substrate-binding subunit complement(978824..979639) Dickeya zeae Ech1591 8120661 YP_003003204.1 CDS Dd1591_0846 NC_012912.1 979702 980355 R part of the MetNIQ methionine uptake system; DL-methionine transporter permease subunit complement(979702..980355) Dickeya zeae Ech1591 8120662 YP_003003205.1 CDS Dd1591_0847 NC_012912.1 980348 981379 R KEGG: seh:SeHA_C0285 D-methionine ABC transporter, ATP-binding protein; TIGRFAM: D-methionine ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; D-methionine ABC transporter ATPase subunit complement(980348..981379) Dickeya zeae Ech1591 8120663 YP_003003206.1 CDS Dd1591_0848 NC_012912.1 981560 982126 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 981560..982126 Dickeya zeae Ech1591 8120664 YP_003003207.1 CDS Dd1591_0849 NC_012912.1 988017 989318 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: eca:ECA3522 alpha-ketoglutarate transporter; alpha-ketoglutarate transporter 988017..989318 Dickeya zeae Ech1591 8120671 YP_003003208.1 CDS Dd1591_0850 NC_012912.1 989315 989644 R KEGG: eum:ECUMN_2912 conserved hypothetical protein YfiM; putative exported protein; hypothetical protein complement(989315..989644) Dickeya zeae Ech1591 8120672 YP_003003209.1 CDS pssA NC_012912.1 989739 991094 R catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase complement(989739..991094) Dickeya zeae Ech1591 8120673 YP_003003210.1 CDS Dd1591_0852 NC_012912.1 991248 993914 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: eca:ECA3519 putative acyl-CoA synthetase; GCN5-related N-acetyltransferase complement(991248..993914) Dickeya zeae Ech1591 8117667 YP_003003211.1 CDS Dd1591_0853 NC_012912.1 993948 994664 R PFAM: DTW domain containing protein; KEGG: eca:ECA3518 hypothetical protein; DTW domain-containing protein complement(993948..994664) Dickeya zeae Ech1591 8117668 YP_003003212.1 CDS Dd1591_0854 NC_012912.1 994768 995193 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: eca:ECA3517 thioredoxin 2; thioredoxin 2 complement(994768..995193) Dickeya zeae Ech1591 8117669 YP_003003213.1 CDS Dd1591_0855 NC_012912.1 995300 995539 D hypothetical protein 995300..995539 Dickeya zeae Ech1591 8117670 YP_003003214.1 CDS Dd1591_0856 NC_012912.1 995572 996765 D PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: eca:ECA3516 putative methyltransferase; putative methyltransferase 995572..996765 Dickeya zeae Ech1591 8117671 YP_003003215.1 CDS Dd1591_0857 NC_012912.1 996842 998374 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA3513 multidrug resistance protein B; EmrB/QacA subfamily drug resistance transporter complement(996842..998374) Dickeya zeae Ech1591 8117672 YP_003003216.1 CDS Dd1591_0858 NC_012912.1 998393 999568 R TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA3512 multidrug resistance protein A; efflux pump membrane protein complement(998393..999568) Dickeya zeae Ech1591 8117673 YP_003003217.1 CDS Dd1591_0859 NC_012912.1 999739 1000251 R DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA complement(999739..1000251) Dickeya zeae Ech1591 8117674 YP_003003218.1 CDS Dd1591_0860 NC_012912.1 1000429 1000770 R KEGG: eca:ECA3510 hypothetical protein; hypothetical protein complement(1000429..1000770) Dickeya zeae Ech1591 8117675 YP_003003219.1 CDS Dd1591_0861 NC_012912.1 1000767 1001480 R PFAM: AzlC family protein; KEGG: eca:ECA3509 putative amino acid transporter; AzlC family protein complement(1000767..1001480) Dickeya zeae Ech1591 8117676 YP_003003220.1 CDS Dd1591_0862 NC_012912.1 1001481 1002680 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA3508 putative transport protein; major facilitator superfamily protein complement(1001481..1002680) Dickeya zeae Ech1591 8117677 YP_003003221.1 CDS proX NC_012912.1 1002928 1003926 R with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit complement(1002928..1003926) Dickeya zeae Ech1591 8117678 YP_003003222.1 CDS Dd1591_0864 NC_012912.1 1004056 1005258 R with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein complement(1004056..1005258) Dickeya zeae Ech1591 8117679 YP_003003223.1 CDS Dd1591_0865 NC_012912.1 1005251 1006453 R KEGG: eca:ECA3502 glycine betaine/L-proline transport ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; glycine/betaine/L-proline ABC transporter ATPase complement(1005251..1006453) Dickeya zeae Ech1591 8117680 YP_003003224.1 CDS Dd1591_0866 NC_012912.1 1007099 1008583 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: kpe:KPK_2569 permease, cytosine/purine, uracil, thiamine, allantoin family; cytosine/purines uracil thiamine allantoin permease complement(1007099..1008583) Dickeya zeae Ech1591 8117681 YP_003003225.1 CDS Dd1591_0867 NC_012912.1 1008737 1009480 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: eta:ETA_26320 transcriptional regulator, GntR family; GntR family transcriptional regulator 1008737..1009480 Dickeya zeae Ech1591 8117682 YP_003003226.1 CDS Dd1591_0868 NC_012912.1 1009477 1010214 D PFAM: Asp/Glu/hydantoin racemase; KEGG: spe:Spro_0915 Asp/Glu racemase; Asp/Glu/hydantoin racemase 1009477..1010214 Dickeya zeae Ech1591 8117683 YP_003003227.1 CDS Dd1591_0869 NC_012912.1 1010258 1011205 D KEGG: spe:Spro_0916 chitin deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein 1010258..1011205 Dickeya zeae Ech1591 8117684 YP_003003228.1 CDS Dd1591_0870 NC_012912.1 1011456 1012802 D PFAM: HipA domain protein; KEGG: spc:Sputcn32_2916 HipA domain-containing protein; HipA domain-containing protein 1011456..1012802 Dickeya zeae Ech1591 8117685 YP_003003229.1 CDS Dd1591_0871 NC_012912.1 1012799 1013311 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: spe:Spro_3692 putative transcriptional regulator; XRE family transcriptional regulator 1012799..1013311 Dickeya zeae Ech1591 8117686 YP_003003230.1 CDS Dd1591_0872 NC_012912.1 1013365 1013760 R KEGG: eca:ECA3500 hypothetical protein; hypothetical protein complement(1013365..1013760) Dickeya zeae Ech1591 8117687 YP_003003231.1 CDS Dd1591_0873 NC_012912.1 1013757 1015169 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1013757..1015169) Dickeya zeae Ech1591 8117688 YP_003003232.1 CDS Dd1591_0874 NC_012912.1 1015166 1015363 R KEGG: eca:ECA3498 hypothetical protein; hypothetical protein complement(1015166..1015363) Dickeya zeae Ech1591 8117689 YP_003003233.1 CDS Dd1591_0875 NC_012912.1 1015388 1016977 R KEGG: eca:ECA3497 putative gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1015388..1016977) Dickeya zeae Ech1591 8117690 YP_003003234.1 CDS Dd1591_0876 NC_012912.1 1017242 1018081 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: eca:ECA3496 putative transcriptional regulator; RpiR family transcriptional regulator 1017242..1018081 Dickeya zeae Ech1591 8117691 YP_003003235.1 CDS Dd1591_0877 NC_012912.1 1018426 1019148 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA3495 putative amino acid ABC transporter, substrate binding protein; extracellular solute-binding protein family 3 1018426..1019148 Dickeya zeae Ech1591 8117692 YP_003003236.1 CDS Dd1591_0878 NC_012912.1 1019158 1019823 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3494 putative amino acid ABC transporter, permease protein; polar amino acid ABC transporter permease 1019158..1019823 Dickeya zeae Ech1591 8117693 YP_003003237.1 CDS Dd1591_0879 NC_012912.1 1019823 1020479 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3493 putative amino acid ABC transporter, permease protein; polar amino acid ABC transporter permease 1019823..1020479 Dickeya zeae Ech1591 8117694 YP_003003238.1 CDS Dd1591_0880 NC_012912.1 1020460 1021191 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3492 putative amino acid ABC transporter, ATP-binding protein; ABC transporter 1020460..1021191 Dickeya zeae Ech1591 8117695 YP_003003239.1 CDS Dd1591_0881 NC_012912.1 1021253 1022497 D PFAM: aminotransferase class V; KEGG: eca:ECA3491 purine catabolism protein; aminotransferase class V 1021253..1022497 Dickeya zeae Ech1591 8117696 YP_003003240.1 CDS Dd1591_0882 NC_012912.1 1022509 1023759 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 1022509..1023759 Dickeya zeae Ech1591 8117697 YP_003003241.1 CDS Dd1591_0883 NC_012912.1 1024140 1024907 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eca:ECA3489 hypothetical protein; hypothetical protein complement(1024140..1024907) Dickeya zeae Ech1591 8117698 YP_003003242.1 CDS Dd1591_0884 NC_012912.1 1024895 1026052 R catalyzes the transfer of an amino moiety; putative aminotransferase complement(1024895..1026052) Dickeya zeae Ech1591 8117699 YP_003003243.1 CDS Dd1591_0885 NC_012912.1 1026254 1026868 D catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway; methylthioribulose-1-phosphate dehydratase 1026254..1026868 Dickeya zeae Ech1591 8117700 YP_003003244.1 CDS Dd1591_0886 NC_012912.1 1026865 1027575 D KEGG: eca:ECA3486 enolase-phosphatase; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 1026865..1027575 Dickeya zeae Ech1591 8117701 YP_003003245.1 CDS Dd1591_0887 NC_012912.1 1027572 1028114 D PFAM: Acireductone dioxygenase ARD; KEGG: eca:ECA3485 oxidase; Acireductone dioxygenase ARD 1027572..1028114 Dickeya zeae Ech1591 8117702 YP_003003246.1 CDS Dd1591_0888 NC_012912.1 1028192 1029223 R KEGG: eca:ECA3477 putative translation initiation factor EIF-2B; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family complement(1028192..1029223) Dickeya zeae Ech1591 8117703 YP_003003247.1 CDS mtnK NC_012912.1 1029494 1030696 D phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 1029494..1030696 Dickeya zeae Ech1591 8117704 YP_003003248.1 CDS fadE NC_012912.1 1030751 1033195 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(1030751..1033195) Dickeya zeae Ech1591 8117705 YP_003003249.1 CDS gmhA NC_012912.1 1033529 1034110 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1033529..1034110 Dickeya zeae Ech1591 8117706 YP_003003250.1 CDS Dd1591_0892 NC_012912.1 1034166 1034933 D PFAM: glutamine amidotransferase class-II; KEGG: eca:ECA3472 hypothetical protein; glutamine amidotransferase class-II 1034166..1034933 Dickeya zeae Ech1591 8117707 YP_003003251.1 CDS Dd1591_0893 NC_012912.1 1034904 1035629 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: eca:ECA3471 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(1034904..1035629) Dickeya zeae Ech1591 8117708 YP_003003252.1 CDS Dd1591_0894 NC_012912.1 1036047 1037105 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1036047..1037105 Dickeya zeae Ech1591 8117709 YP_003003253.1 CDS Dd1591_0895 NC_012912.1 1037199 1038659 R KEGG: yen:YE3206 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase dimerisation domain protein; peptidase M20; aminoacyl-histidine dipeptidase complement(1037199..1038659) Dickeya zeae Ech1591 8117710 YP_003003254.1 CDS Dd1591_0896 NC_012912.1 1038909 1039103 R hypothetical protein complement(1038909..1039103) Dickeya zeae Ech1591 8117711 YP_003003255.1 CDS Dd1591_0897 NC_012912.1 1039335 1039793 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 1039335..1039793 Dickeya zeae Ech1591 8117712 YP_003003256.1 CDS frsA NC_012912.1 1039995 1041245 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 1039995..1041245 Dickeya zeae Ech1591 8117713 YP_003003257.1 CDS Dd1591_0899 NC_012912.1 1041604 1041963 D PFAM: transcriptional regulator Crl; KEGG: cko:CKO_02956 DNA-binding transcriptional regulator Crl; transcriptional regulator Crl 1041604..1041963 Dickeya zeae Ech1591 8117714 YP_003003258.1 CDS Dd1591_0900 NC_012912.1 1042088 1043191 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1042088..1043191 Dickeya zeae Ech1591 8117715 YP_003003259.1 CDS proA NC_012912.1 1043202 1044455 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1043202..1044455 Dickeya zeae Ech1591 8117716 YP_003003260.1 CDS Dd1591_0902 NC_012912.1 1044855 1045103 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: eca:ECA0964 putative regulatory protein; XRE family transcriptional regulator complement(1044855..1045103) Dickeya zeae Ech1591 8117718 YP_003003261.1 CDS Dd1591_0903 NC_012912.1 1045205 1045438 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: eca:ECA0964 putative regulatory protein; XRE family transcriptional regulator complement(1045205..1045438) Dickeya zeae Ech1591 8117719 YP_003003262.1 CDS Dd1591_0904 NC_012912.1 1045538 1045786 D KEGG: eca:ECA0513 putative phage transcriptional regulator; putative transcriptional regulator Nlp 1045538..1045786 Dickeya zeae Ech1591 8117720 YP_003003263.1 CDS Dd1591_0905 NC_012912.1 1053353 1053640 R TIGRFAM: CRISPR-associated protein Cas2; KEGG: vco:VC0395_A2677 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 complement(1053353..1053640) Dickeya zeae Ech1591 8117721 YP_003003264.1 CDS Dd1591_0906 NC_012912.1 1053618 1054493 R TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: vco:VC0395_A2676 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 complement(1053618..1054493) Dickeya zeae Ech1591 8117722 YP_003003265.1 CDS Dd1591_0907 NC_012912.1 1054494 1055210 R TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: vco:VC0395_A2675 CRISPR-associated protein Cas5, ecoli subtype; Cas5 family CRISPR-associated protein complement(1054494..1055210) Dickeya zeae Ech1591 8117723 YP_003003266.1 CDS Dd1591_0908 NC_012912.1 1055222 1056256 R TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: vco:VC0395_A2674 CRISPR-associated protein, CSE4 family; Cse4 family CRISPR-associated protein complement(1055222..1056256) Dickeya zeae Ech1591 8117724 YP_003003267.1 CDS Dd1591_0909 NC_012912.1 1056288 1056935 R TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: vco:VC0395_A2673 CRISPR-associated protein, CSE3 family; Cse3 family CRISPR-associated protein complement(1056288..1056935) Dickeya zeae Ech1591 8117725 YP_003003268.1 CDS Dd1591_0910 NC_012912.1 1056928 1057494 R TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: vco:VC0395_A2672 CRISPR-associated protein, CSE2 family; Cse2 family CRISPR-associated protein complement(1056928..1057494) Dickeya zeae Ech1591 8117726 YP_003003269.1 CDS Dd1591_0911 NC_012912.1 1057508 1059031 R TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: vco:VC0395_A2671 CRISPR-associated protein, CSE1 family; Cse1 family CRISPR-associated protein complement(1057508..1059031) Dickeya zeae Ech1591 8117727 YP_003003270.1 CDS Dd1591_0912 NC_012912.1 1059035 1061650 R KEGG: vco:VC0395_A2670 CRISPR-associated helicase Cas3 domain protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; CRISPR-associated helicase Cas3 complement(1059035..1061650) Dickeya zeae Ech1591 8117728 YP_003003271.1 CDS Dd1591_0913 NC_012912.1 1061825 1062664 R KEGG: cja:CJA_2458 hypothetical protein; hypothetical protein complement(1061825..1062664) Dickeya zeae Ech1591 8117729 YP_003003272.1 CDS Dd1591_0914 NC_012912.1 1063263 1063553 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bps:BPSL0756 putative DNA-binding protein; XRE family transcriptional regulator complement(1063263..1063553) Dickeya zeae Ech1591 8117730 YP_003003273.1 CDS Dd1591_0915 NC_012912.1 1063676 1064062 D KEGG: nmu:Nmul_A1533 hypothetical protein; hypothetical protein 1063676..1064062 Dickeya zeae Ech1591 8117731 YP_003003274.1 CDS Dd1591_0916 NC_012912.1 1064104 1065756 R PFAM: replication gene A; KEGG: spe:Spro_0874 replication gene A; replication gene A protein complement(1064104..1065756) Dickeya zeae Ech1591 8117732 YP_003003275.1 CDS Dd1591_0917 NC_012912.1 1065770 1066033 R KEGG: sbn:Sbal195_3111 hypothetical protein; hypothetical protein complement(1065770..1066033) Dickeya zeae Ech1591 8117733 YP_003003276.1 CDS Dd1591_0918 NC_012912.1 1066138 1066872 R KEGG: sat:SYN_02230 putative cytoplasmic protein; hypothetical protein complement(1066138..1066872) Dickeya zeae Ech1591 8117734 YP_003003277.1 CDS Dd1591_0919 NC_012912.1 1066900 1068246 R PFAM: integrase family protein; KEGG: psa:PST_1489 integrase; integrase family protein complement(1066900..1068246) Dickeya zeae Ech1591 8117735 YP_003003278.1 CDS Dd1591_0921 NC_012912.1 1069290 1070300 D KEGG: ypi:YpsIP31758_0549 HNH endonuclease domain-containing protein; hypothetical protein 1069290..1070300 Dickeya zeae Ech1591 8117737 YP_003003279.1 CDS Dd1591_0922 NC_012912.1 1070407 1070643 D PFAM: Prophage CP4-57 regulatory; KEGG: ypy:YPK_3752 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 1070407..1070643 Dickeya zeae Ech1591 8117738 YP_003003280.1 CDS Dd1591_0923 NC_012912.1 1070772 1072184 D KEGG: ecd:ECDH10B_2791 CP4-57 prophage; hypothetical protein; CP4-57 prophage protein 1070772..1072184 Dickeya zeae Ech1591 8117739 YP_003003281.1 CDS Dd1591_0924 NC_012912.1 1072412 1073035 D KEGG: ecd:ECDH10B_2792 CP4-57 prophage; hypothetical protein; CP4-57 prophage protein 1072412..1073035 Dickeya zeae Ech1591 8117740 YP_003003282.1 CDS Dd1591_0925 NC_012912.1 1073108 1074715 R TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: rpi:Rpic_0450 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit complement(1073108..1074715) Dickeya zeae Ech1591 8117741 YP_003003283.1 CDS Dd1591_0926 NC_012912.1 1074712 1075884 R anticodon nuclease complement(1074712..1075884) Dickeya zeae Ech1591 8117742 YP_003003284.1 CDS Dd1591_0928 NC_012912.1 1077177 1077362 R hypothetical protein complement(1077177..1077362) Dickeya zeae Ech1591 8117744 YP_003003285.1 CDS Dd1591_0929 NC_012912.1 1077362 1080334 R KEGG: rpi:Rpic_0447 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; type I site-specific deoxyribonuclease, HsdR family complement(1077362..1080334) Dickeya zeae Ech1591 8117745 YP_003003286.1 CDS Dd1591_0930 NC_012912.1 1080810 1081676 D PFAM: GTP-binding protein HSR1-related; KEGG: ecd:ECDH10B_0238 CP4-6 prophage; GTP-binding protein; GTP-binding protein HSR1-related 1080810..1081676 Dickeya zeae Ech1591 8117746 YP_003003287.1 CDS Dd1591_0931 NC_012912.1 1081773 1082594 D PFAM: protein of unknown function DUF932; KEGG: ecd:ECDH10B_0237 CP4-6 prophage; hypothetical protein; hypothetical protein 1081773..1082594 Dickeya zeae Ech1591 8121074 YP_003003288.1 CDS Dd1591_0932 NC_012912.1 1082625 1083098 D TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: ent:Ent638_0474 DNA repair protein RadC; DNA repair protein RadC 1082625..1083098 Dickeya zeae Ech1591 8121075 YP_003003289.1 CDS Dd1591_0933 NC_012912.1 1083163 1083477 D PFAM: protein of unknown function DUF1219; KEGG: eca:ECA2853 hypothetical protein; hypothetical protein 1083163..1083477 Dickeya zeae Ech1591 8121076 YP_003003290.1 CDS Dd1591_0935 NC_012912.1 1084533 1085180 D KEGG: spc:Sputcn32_3528 hypothetical protein; hypothetical protein 1084533..1085180 Dickeya zeae Ech1591 8121078 YP_003003291.1 CDS Dd1591_0936 NC_012912.1 1085194 1086243 D PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: neu:NE1364 Appr-1-p processing enzyme; Appr-1-p processing domain-containing protein 1085194..1086243 Dickeya zeae Ech1591 8121079 YP_003003292.1 CDS Dd1591_0937 NC_012912.1 1086309 1086449 D hypothetical protein 1086309..1086449 Dickeya zeae Ech1591 8121080 YP_003003293.1 CDS Dd1591_0938 NC_012912.1 1086520 1087440 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: psp:PSPPH_2193 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1086520..1087440) Dickeya zeae Ech1591 8121081 YP_003003294.1 CDS Dd1591_0939 NC_012912.1 1087566 1088012 D PFAM: protein of unknown function UPF0074; KEGG: pst:PSPTO_2406 hypothetical protein; BadM/Rrf2 family transcriptional regulator 1087566..1088012 Dickeya zeae Ech1591 8121082 YP_003003295.1 CDS Dd1591_0940 NC_012912.1 1088171 1088818 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pst:PSPTO_2407 hypothetical protein; NADP oxidoreductase coenzyme F420-dependent 1088171..1088818 Dickeya zeae Ech1591 8121083 YP_003003296.1 CDS Dd1591_0941 NC_012912.1 1088928 1089827 D PFAM: Pirin domain protein; KEGG: psp:PSPPH_2192 pirin; Pirin domain-containing protein 1088928..1089827 Dickeya zeae Ech1591 8121084 YP_003003297.1 CDS Dd1591_0943 NC_012912.1 1090544 1090870 D PFAM: Insertion element protein; KEGG: sdy:SDY_P213 iso-IS1 ORF1; Insertion element protein 1090544..1090870 Dickeya zeae Ech1591 8121086 YP_003003298.1 CDS Dd1591_0945 NC_012912.1 1091198 1091455 D KEGG: eca:ECA2042 hypothetical protein; hypothetical protein 1091198..1091455 Dickeya zeae Ech1591 8121088 YP_003003299.1 CDS Dd1591_0946 NC_012912.1 1091712 1092731 D PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: pmr:PMI0007 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1091712..1092731 Dickeya zeae Ech1591 8121089 YP_003003300.1 CDS Dd1591_0948 NC_012912.1 1094115 1094942 R KEGG: aha:AHA_1993 ada regulatory protein; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; AraC family transcriptional regulator complement(1094115..1094942) Dickeya zeae Ech1591 8121091 YP_003003301.1 CDS Dd1591_0949 NC_012912.1 1095377 1096516 D KEGG: eca:ECA3130 poly(glycerophosphate chain) D-alanine transfer protein; poly(glycerophosphate chain) D-alanine transfer protein 1095377..1096516 Dickeya zeae Ech1591 8121092 YP_003003302.1 CDS Dd1591_0950 NC_012912.1 1096513 1096635 D hypothetical protein 1096513..1096635 Dickeya zeae Ech1591 8121093 YP_003003303.1 CDS Dd1591_0951 NC_012912.1 1096646 1097764 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: eca:ECA3129 peptidoglycan biosynthesis protein; membrane bound O-acyl transferase MBOAT family protein 1096646..1097764 Dickeya zeae Ech1591 8121094 YP_003003304.1 CDS Dd1591_0952 NC_012912.1 1097761 1099197 D PFAM: AMP-dependent synthetase and ligase; KEGG: eca:ECA3128 putative D-alanine--poly(phosphoribitol) ligase subunit 1; AMP-dependent synthetase and ligase 1097761..1099197 Dickeya zeae Ech1591 8121095 YP_003003305.1 CDS Dd1591_0953 NC_012912.1 1099216 1099437 D KEGG: eca:ECA3127 acyl carrier protein; acyl carrier protein 1099216..1099437 Dickeya zeae Ech1591 8121096 YP_003003306.1 CDS Dd1591_0954 NC_012912.1 1099501 1100541 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bch:Bcen2424_6323 AraC family transcriptional regulator; AraC family transcriptional regulator complement(1099501..1100541) Dickeya zeae Ech1591 8121097 YP_003003307.1 CDS Dd1591_0955 NC_012912.1 1100711 1101484 D KEGG: bcm:Bcenmc03_1718 hypothetical protein; hypothetical protein 1100711..1101484 Dickeya zeae Ech1591 8121098 YP_003003308.1 CDS Dd1591_0956 NC_012912.1 1101635 1102258 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bch:Bcen2424_3293 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) 1101635..1102258 Dickeya zeae Ech1591 8121099 YP_003003309.1 CDS Dd1591_0957 NC_012912.1 1102281 1102589 D PFAM: YCII-related; KEGG: ent:Ent638_0388 hypothetical protein; YCII-like protein 1102281..1102589 Dickeya zeae Ech1591 8121100 YP_003003310.1 CDS Dd1591_0958 NC_012912.1 1102833 1104524 D KEGG: efe:EFER_2212 sensory kinase in two-component system with YehT; PFAM: histidine kinase internal region; GAF domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; signal transduction histidine kinase, LytS 1102833..1104524 Dickeya zeae Ech1591 8121101 YP_003003311.1 CDS Dd1591_0959 NC_012912.1 1104518 1105243 D unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 1104518..1105243 Dickeya zeae Ech1591 8121102 YP_003003312.1 CDS Dd1591_0960 NC_012912.1 1105673 1107820 D PFAM: carbon starvation protein CstA; KEGG: eum:ECUMN_4963 conserved hypothetical protein; putative inner membrane protein; carbon starvation protein CstA 1105673..1107820 Dickeya zeae Ech1591 8121103 YP_003003313.1 CDS Dd1591_0961 NC_012912.1 1107926 1108129 D PFAM: protein of unknown function DUF466; KEGG: eca:ECA1188 hypothetical protein; hypothetical protein 1107926..1108129 Dickeya zeae Ech1591 8121104 YP_003003314.1 CDS Dd1591_0962 NC_012912.1 1108158 1109126 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sbc:SbBS512_E4878 CobW/P47K family protein; putative GTP-binding protein YjiA 1108158..1109126 Dickeya zeae Ech1591 8121105 YP_003003315.1 CDS Dd1591_0963 NC_012912.1 1109204 1110247 R activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR complement(1109204..1110247) Dickeya zeae Ech1591 8121106 YP_003003316.1 CDS Dd1591_0964 NC_012912.1 1110476 1111855 R PFAM: Aldehyde Dehydrogenase; KEGG: ecz:ECS88_2634 putative aldehyde dehydrogenase, ethanolamine utilization protein; aldehyde dehydrogenase complement(1110476..1111855) Dickeya zeae Ech1591 8121107 YP_003003317.1 CDS Dd1591_0965 NC_012912.1 1112295 1113983 R PFAM: peptidase U34 dipeptidase; KEGG: dal:Dalk_1471 peptidase U34 dipeptidase; peptidase U34 dipeptidase complement(1112295..1113983) Dickeya zeae Ech1591 8121108 YP_003003318.1 CDS Dd1591_0966 NC_012912.1 1114082 1115506 R PFAM: phosphatidylserine decarboxylase-related; KEGG: bxe:Bxe_C0076 putative phosphatidylserine decarboxylase; phosphatidylserine decarboxylase-related complement(1114082..1115506) Dickeya zeae Ech1591 8121109 YP_003003319.1 CDS Dd1591_0967 NC_012912.1 1115793 1116785 R membrane component of a putative sugar ABC transporter system; inner membrane ABC transporter permease protein YjfF complement(1115793..1116785) Dickeya zeae Ech1591 8121110 YP_003003320.1 CDS Dd1591_0968 NC_012912.1 1116772 1117809 R PFAM: inner-membrane translocator; KEGG: kpe:KPK_5041 putative sugar ABC transporter, permease protein; inner-membrane translocator complement(1116772..1117809) Dickeya zeae Ech1591 8121111 YP_003003321.1 CDS Dd1591_0969 NC_012912.1 1117823 1119325 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ent:Ent638_0413 ABC transporter related; ABC transporter complement(1117823..1119325) Dickeya zeae Ech1591 8121112 YP_003003322.1 CDS Dd1591_0970 NC_012912.1 1119403 1120359 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: kpe:KPK_5043 putative sugar ABC transporter, periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator complement(1119403..1120359) Dickeya zeae Ech1591 8121113 YP_003003323.1 CDS Dd1591_0971 NC_012912.1 1121340 1121435 D hypothetical protein 1121340..1121435 Dickeya zeae Ech1591 8121114 YP_003003324.1 CDS Dd1591_0972 NC_012912.1 1121524 1122117 R SMART: Ankyrin; KEGG: pap:PSPA7_5252 hypothetical protein; ankyrin complement(1121524..1122117) Dickeya zeae Ech1591 8121115 YP_003003325.1 CDS Dd1591_0973 NC_012912.1 1122178 1123725 R PFAM: Catalase domain protein; KEGG: pau:PA14_61040 catalase; catalase complement(1122178..1123725) Dickeya zeae Ech1591 8121116 YP_003003326.1 CDS Dd1591_0974 NC_012912.1 1124565 1125338 R TIGRFAM: acetoin reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: kpe:KPK_2269 acetoin dehydrogenase; acetoin reductase complement(1124565..1125338) Dickeya zeae Ech1591 8121117 YP_003003327.1 CDS Dd1591_0975 NC_012912.1 1125673 1126326 D hypothetical protein 1125673..1126326 Dickeya zeae Ech1591 8121118 YP_003003328.1 CDS Dd1591_0976 NC_012912.1 1126427 1127056 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eta:ETA_25920 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1126427..1127056 Dickeya zeae Ech1591 8121119 YP_003003329.1 CDS Dd1591_0977 NC_012912.1 1127477 1128010 D PFAM: cytochrome B561; KEGG: esa:ESA_01704 hypothetical protein; cytochrome B561 1127477..1128010 Dickeya zeae Ech1591 8121120 YP_003003330.1 CDS Dd1591_0978 NC_012912.1 1128075 1128530 R PFAM: cyclase/dehydrase; KEGG: eca:ECA3372 hypothetical protein; cyclase/dehydrase complement(1128075..1128530) Dickeya zeae Ech1591 8121121 YP_003003331.1 CDS Dd1591_0979 NC_012912.1 1130219 1130689 R PFAM: GCN5-related N-acetyltransferase; KEGG: bte:BTH_II0494 acetyltransferase; GCN5-related N-acetyltransferase complement(1130219..1130689) Dickeya zeae Ech1591 8121122 YP_003003332.1 CDS Dd1591_0980 NC_012912.1 1130957 1131445 D PFAM: CinA domain protein; KEGG: eca:ECA3370 competence damage-inducible protein A; competence damage-inducible protein A 1130957..1131445 Dickeya zeae Ech1591 8121123 YP_003003333.1 CDS Dd1591_0981 NC_012912.1 1131555 1132631 D KEGG: eca:ECA3369 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 1131555..1132631 Dickeya zeae Ech1591 8121124 YP_003003334.1 CDS recX NC_012912.1 1132674 1133162 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1132674..1133162 Dickeya zeae Ech1591 8121125 YP_003003335.1 CDS alaS NC_012912.1 1133300 1135927 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1133300..1135927 Dickeya zeae Ech1591 8121126 YP_003003336.1 CDS Dd1591_0984 NC_012912.1 1136250 1136435 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1136250..1136435 Dickeya zeae Ech1591 8121127 YP_003003337.1 CDS Dd1591_0985 NC_012912.1 1137363 1137929 D YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase 1137363..1137929 Dickeya zeae Ech1591 8121132 YP_003003338.1 CDS Dd1591_0986 NC_012912.1 1137926 1138354 D KEGG: eca:ECA3364 hypothetical protein; hypothetical protein 1137926..1138354 Dickeya zeae Ech1591 8121133 YP_003003339.1 CDS Dd1591_0987 NC_012912.1 1138425 1139987 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1138425..1139987 Dickeya zeae Ech1591 8121134 YP_003003340.1 CDS Dd1591_0988 NC_012912.1 1140145 1140660 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1140145..1140660 Dickeya zeae Ech1591 8121135 YP_003003341.1 CDS Dd1591_0989 NC_012912.1 1140759 1141553 R PFAM: cytochrome c assembly protein; KEGG: eca:ECA3361 hypothetical protein; cytochrome c assembly protein complement(1140759..1141553) Dickeya zeae Ech1591 8121136 YP_003003342.1 CDS Dd1591_0990 NC_012912.1 1141726 1143087 D with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1141726..1143087 Dickeya zeae Ech1591 8121137 YP_003003343.1 CDS rpsP NC_012912.1 1143245 1143493 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1143245..1143493 Dickeya zeae Ech1591 8121138 YP_003003344.1 CDS rimM NC_012912.1 1143512 1144060 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1143512..1144060 Dickeya zeae Ech1591 8121139 YP_003003345.1 CDS trmD NC_012912.1 1144101 1144856 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1144101..1144856 Dickeya zeae Ech1591 8121140 YP_003003346.1 CDS rplS NC_012912.1 1144919 1145266 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1144919..1145266 Dickeya zeae Ech1591 8121141 YP_003003347.1 CDS Dd1591_0995 NC_012912.1 1145343 1146293 R KEGG: eca:ECA3355 hypothetical protein; hypothetical protein complement(1145343..1146293) Dickeya zeae Ech1591 8121142 YP_003003348.1 CDS Dd1591_0996 NC_012912.1 1146605 1146982 R KEGG: eca:ECA3354 hypothetical protein; hypothetical protein complement(1146605..1146982) Dickeya zeae Ech1591 8121143 YP_003003349.1 CDS Dd1591_0997 NC_012912.1 1147575 1148639 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1147575..1148639 Dickeya zeae Ech1591 8121144 YP_003003350.1 CDS tyrA NC_012912.1 1148652 1149770 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1148652..1149770 Dickeya zeae Ech1591 8121145 YP_003003351.1 CDS pheA NC_012912.1 1149866 1151047 R catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase complement(1149866..1151047) Dickeya zeae Ech1591 8121146 YP_003003352.1 CDS Dd1591_1000 NC_012912.1 1151412 1151747 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: eca:ECA3349 putative sigma(54) modulation protein; sigma 54 modulation protein/ribosomal protein S30EA complement(1151412..1151747) Dickeya zeae Ech1591 8121147 YP_003003353.1 CDS Dd1591_1001 NC_012912.1 1152035 1152766 R with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO complement(1152035..1152766) Dickeya zeae Ech1591 8121148 YP_003003354.1 CDS Dd1591_1002 NC_012912.1 1152900 1153877 D KEGG: eca:ECA3347 23S rRNA pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase, RluA family 1152900..1153877 Dickeya zeae Ech1591 8121149 YP_003003355.1 CDS Dd1591_1003 NC_012912.1 1153882 1154622 D PFAM: protein of unknown function DUF152; KEGG: eca:ECA3346 hypothetical protein; hypothetical protein 1153882..1154622 Dickeya zeae Ech1591 8121150 YP_003003356.1 CDS Dd1591_1004 NC_012912.1 1154757 1157330 D KEGG: eca:ECA3345 protein disaggregation chaperone; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; protein disaggregation chaperone 1154757..1157330 Dickeya zeae Ech1591 8121151 YP_003003357.1 CDS Dd1591_1005 NC_012912.1 1163115 1163906 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: eca:ECA3344 hypothetical protein; hypothetical protein 1163115..1163906 Dickeya zeae Ech1591 8120277 YP_003003358.1 CDS mltD NC_012912.1 1163963 1165360 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D complement(1163963..1165360) Dickeya zeae Ech1591 8120278 YP_003003359.1 CDS Dd1591_1007 NC_012912.1 1165431 1166186 R KEGG: eca:ECA3342 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase complement(1165431..1166186) Dickeya zeae Ech1591 8120279 YP_003003360.1 CDS Dd1591_1008 NC_012912.1 1166232 1166951 D PFAM: Methyltransferase type 11; KEGG: spe:Spro_0910 methyltransferase type 11; type 11 methyltransferase 1166232..1166951 Dickeya zeae Ech1591 8120280 YP_003003361.1 CDS Dd1591_1009 NC_012912.1 1166979 1167443 R PFAM: ribonuclease H; KEGG: ypi:YpsIP31758_1054 ribonuclease H; Ribonuclease H complement(1166979..1167443) Dickeya zeae Ech1591 8120281 YP_003003362.1 CDS Dd1591_1010 NC_012912.1 1167499 1168233 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1167499..1168233 Dickeya zeae Ech1591 8120282 YP_003003363.1 CDS Dd1591_1011 NC_012912.1 1168492 1169454 R PFAM: ribonucleotide reductase; KEGG: eca:ECA3338 ribonucleotide-diphosphate reductase subunit beta; Ribonucleoside-diphosphate reductase complement(1168492..1169454) Dickeya zeae Ech1591 8120284 YP_003003364.1 CDS Dd1591_1012 NC_012912.1 1169494 1171641 R KEGG: ypp:YPDSF_1623 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha complement(1169494..1171641) Dickeya zeae Ech1591 8120285 YP_003003365.1 CDS Dd1591_1013 NC_012912.1 1171620 1172030 R TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: eca:ECA3336 ribonucleotide reductase stimulatory protein; NrdI protein complement(1171620..1172030) Dickeya zeae Ech1591 8120286 YP_003003366.1 CDS Dd1591_1014 NC_012912.1 1172038 1172271 R PFAM: glutaredoxin; KEGG: eca:ECA3335 putative glutaredoxin; glutaredoxin complement(1172038..1172271) Dickeya zeae Ech1591 8120287 YP_003003367.1 CDS Dd1591_1015 NC_012912.1 1172496 1173290 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(1172496..1173290) Dickeya zeae Ech1591 8120288 YP_003003368.1 CDS Dd1591_1016 NC_012912.1 1173321 1174184 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(1173321..1174184) Dickeya zeae Ech1591 8120289 YP_003003369.1 CDS Dd1591_1017 NC_012912.1 1174293 1174640 R KEGG: eca:ECA3332 hypothetical protein; hypothetical protein complement(1174293..1174640) Dickeya zeae Ech1591 8120290 YP_003003370.1 CDS Dd1591_1018 NC_012912.1 1174881 1176488 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3331 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 1174881..1176488 Dickeya zeae Ech1591 8120291 YP_003003371.1 CDS Dd1591_1019 NC_012912.1 1176496 1177560 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: eca:ECA3330 ATP transporter ATP-binding protein; ABC transporter 1176496..1177560 Dickeya zeae Ech1591 8120292 YP_003003372.1 CDS Dd1591_1020 NC_012912.1 1177708 1178040 R KEGG: asa:ASA_3604 hypothetical protein; hypothetical protein complement(1177708..1178040) Dickeya zeae Ech1591 8120293 YP_003003373.1 CDS Dd1591_1021 NC_012912.1 1178195 1178647 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3329 putative acetyltransferase; GCN5-related N-acetyltransferase complement(1178195..1178647) Dickeya zeae Ech1591 8120294 YP_003003374.1 CDS Dd1591_1022 NC_012912.1 1178782 1179315 D KEGG: eca:ECA3328 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 1178782..1179315 Dickeya zeae Ech1591 8120295 YP_003003375.1 CDS Dd1591_1023 NC_012912.1 1179444 1180085 R catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase complement(1179444..1180085) Dickeya zeae Ech1591 8120296 YP_003003376.1 CDS Dd1591_1024 NC_012912.1 1180213 1181136 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_3996 ABC transporter-related protein; ABC transporter 1180213..1181136 Dickeya zeae Ech1591 8120297 YP_003003377.1 CDS Dd1591_1025 NC_012912.1 1181133 1181903 D PFAM: ABC-2 type transporter; KEGG: eca:ECA3324 ABC transporter integral membrane protein; ABC transporter 1181133..1181903 Dickeya zeae Ech1591 8120298 YP_003003378.1 CDS Dd1591_1026 NC_012912.1 1181968 1182348 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(1181968..1182348) Dickeya zeae Ech1591 8120299 YP_003003379.1 CDS panC NC_012912.1 1182374 1183228 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(1182374..1183228) Dickeya zeae Ech1591 8120300 YP_003003380.1 CDS Dd1591_1028 NC_012912.1 1183244 1184038 R KEGG: eca:ECA3321 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1183244..1184038) Dickeya zeae Ech1591 8120301 YP_003003381.1 CDS Dd1591_1029 NC_012912.1 1184210 1184698 R KEGG: eca:ECA3320 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1184210..1184698) Dickeya zeae Ech1591 8120302 YP_003003382.1 CDS Dd1591_1031 NC_012912.1 1186167 1187075 R PFAM: glutamyl-tRNA synthetase class Ic; KEGG: eca:ECA3318 glutamyl-Q tRNA(Asp) synthetase; Glutamate--tRNA ligase complement(1186167..1187075) Dickeya zeae Ech1591 8120304 YP_003003383.1 CDS dksA NC_012912.1 1187168 1187623 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: efe:EFER_0168 DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein; RNA polymerase-binding transcription factor complement(1187168..1187623) Dickeya zeae Ech1591 8120305 YP_003003384.1 CDS Dd1591_1033 NC_012912.1 1187792 1188511 R TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: eca:ECA3316 sugar fermentation stimulation protein A; sugar fermentation stimulation protein complement(1187792..1188511) Dickeya zeae Ech1591 8120306 YP_003003385.1 CDS Dd1591_1034 NC_012912.1 1188524 1189057 R TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: eca:ECA3315 2'-5' RNA ligase; 2'-5' RNA ligase complement(1188524..1189057) Dickeya zeae Ech1591 8120307 YP_003003386.1 CDS Dd1591_1035 NC_012912.1 1189279 1191756 D similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 1189279..1191756 Dickeya zeae Ech1591 8120308 YP_003003387.1 CDS mrcB NC_012912.1 1191860 1194361 D bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 1191860..1194361 Dickeya zeae Ech1591 8120309 YP_003003388.1 CDS Dd1591_1037 NC_012912.1 1194537 1195817 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1194537..1195817) Dickeya zeae Ech1591 8120310 YP_003003389.1 CDS Dd1591_1038 NC_012912.1 1196122 1196466 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: spe:Spro_0783 iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly accessory protein 1196122..1196466 Dickeya zeae Ech1591 8120311 YP_003003390.1 CDS Dd1591_1039 NC_012912.1 1196616 1197434 R PFAM: periplasmic binding protein; KEGG: eca:ECA3304 vitamin B12-transporter protein BtuF; periplasmic binding protein complement(1196616..1197434) Dickeya zeae Ech1591 8120312 YP_003003391.1 CDS Dd1591_1040 NC_012912.1 1197486 1198187 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(1197486..1198187) Dickeya zeae Ech1591 8120313 YP_003003392.1 CDS dgt NC_012912.1 1198399 1199916 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 1198399..1199916 Dickeya zeae Ech1591 8120314 YP_003003393.1 CDS Dd1591_1042 NC_012912.1 1200081 1201529 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 1200081..1201529 Dickeya zeae Ech1591 8120315 YP_003003394.1 CDS Dd1591_1043 NC_012912.1 1201702 1202859 D regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 1201702..1202859 Dickeya zeae Ech1591 8120316 YP_003003395.1 CDS Dd1591_1044 NC_012912.1 1203187 1204197 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA3299 sulfate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein 1203187..1204197 Dickeya zeae Ech1591 8120317 YP_003003396.1 CDS Dd1591_1045 NC_012912.1 1204294 1205106 D TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3298 sulfate ABC transporter permease protein; sulfate ABC transporter inner membrane subunit CysT 1204294..1205106 Dickeya zeae Ech1591 8120318 YP_003003397.1 CDS Dd1591_1046 NC_012912.1 1205116 1206000 D TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3297 sulfate ABC transporter permease protein; sulfate ABC transporter inner membrane subunit CysW 1205116..1206000 Dickeya zeae Ech1591 8120319 YP_003003398.1 CDS Dd1591_1047 NC_012912.1 1205990 1206982 D KEGG: eca:ECA3296 sulphate ABC transporter ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase subunit 1205990..1206982 Dickeya zeae Ech1591 8120320 YP_003003399.1 CDS Dd1591_1048 NC_012912.1 1207488 1208789 D KEGG: baa:BA_0301 phosphotransferase system, EIIC; TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC; PTS system lactose/cellobiose family transporter subunit IIC 1207488..1208789 Dickeya zeae Ech1591 8120321 YP_003003400.1 CDS Dd1591_1049 NC_012912.1 1208815 1211463 D PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein; alpha-L-rhamnosidase 1208815..1211463 Dickeya zeae Ech1591 8120322 YP_003003401.1 CDS Dd1591_1050 NC_012912.1 1211491 1212435 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: swp:swp_2451 transcriptional regulator, AraC family; AraC family transcriptional regulator 1211491..1212435 Dickeya zeae Ech1591 8120323 YP_003003402.1 CDS Dd1591_1051 NC_012912.1 1212642 1213919 D KEGG: asa:ASA_2994 sucrose porin; hypothetical protein 1212642..1213919 Dickeya zeae Ech1591 8120324 YP_003003403.1 CDS Dd1591_1052 NC_012912.1 1213962 1214930 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ccv:CCV52592_0665 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase fold-3 domain-containing protein 1213962..1214930 Dickeya zeae Ech1591 8120325 YP_003003404.1 CDS Dd1591_1053 NC_012912.1 1215101 1215406 D PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: spe:Spro_4224 phosphotransferase system lactose/cellobiose-specific IIB subunit; phosphotransferase system lactose/cellobiose-specific IIB subunit 1215101..1215406 Dickeya zeae Ech1591 8120326 YP_003003405.1 CDS Dd1591_1054 NC_012912.1 1215475 1215792 D PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: vsa:VSAL_I0707 phosphotransferase system (PTS) component IIA; phosphotransferase system PTS lactose/cellobiose-specific IIA subunit 1215475..1215792 Dickeya zeae Ech1591 8120327 YP_003003406.1 CDS gltX NC_012912.1 1217098 1218513 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1217098..1218513 Dickeya zeae Ech1591 8120332 YP_003003407.1 CDS Dd1591_1056 NC_012912.1 1218590 1219858 R KEGG: pfl:PFL_0498 O-acetylhomoserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; DegT/DnrJ/EryC1/StrS aminotransferase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(1218590..1219858) Dickeya zeae Ech1591 8120333 YP_003003408.1 CDS Dd1591_1057 NC_012912.1 1220449 1221135 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1220449..1221135) Dickeya zeae Ech1591 8120336 YP_003003409.1 CDS Dd1591_1058 NC_012912.1 1221557 1221940 D stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 1221557..1221940 Dickeya zeae Ech1591 8120337 YP_003003410.1 CDS Dd1591_1059 NC_012912.1 1222064 1223416 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(1222064..1223416) Dickeya zeae Ech1591 8120338 YP_003003411.1 CDS Dd1591_1060 NC_012912.1 1223516 1224313 D PFAM: methyltransferase small; KEGG: eca:ECA3286 hypothetical protein; methyltransferase small 1223516..1224313 Dickeya zeae Ech1591 8120339 YP_003003412.1 CDS Dd1591_1061 NC_012912.1 1224408 1226012 R TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: eca:ECA3285 L-aspartate oxidase; L-aspartate oxidase complement(1224408..1226012) Dickeya zeae Ech1591 8120340 YP_003003413.1 CDS Dd1591_1062 NC_012912.1 1226365 1226940 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1226365..1226940 Dickeya zeae Ech1591 8120341 YP_003003414.1 CDS Dd1591_1063 NC_012912.1 1226990 1227655 D PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: spe:Spro_3675 anti-RNA polymerase sigma factor SigE; anti-RNA polymerase sigma factor SigE 1226990..1227655 Dickeya zeae Ech1591 8120342 YP_003003415.1 CDS Dd1591_1064 NC_012912.1 1227655 1228605 D PFAM: MucB/RseB family protein; KEGG: spe:Spro_3674 periplasmic negative regulator of sigmaE; sigma E regulatory protein, MucB/RseB 1227655..1228605 Dickeya zeae Ech1591 8120343 YP_003003416.1 CDS Dd1591_1065 NC_012912.1 1228602 1229072 D involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 1228602..1229072 Dickeya zeae Ech1591 8120344 YP_003003417.1 CDS Dd1591_1066 NC_012912.1 1229333 1231132 D TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: eca:ECA3280 GTP-binding protein LepA; GTP-binding protein LepA 1229333..1231132 Dickeya zeae Ech1591 8120345 YP_003003418.1 CDS Dd1591_1067 NC_012912.1 1231148 1232116 D catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 1231148..1232116 Dickeya zeae Ech1591 8120346 YP_003003419.1 CDS rnc NC_012912.1 1232299 1232979 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1232299..1232979 Dickeya zeae Ech1591 8120347 YP_003003420.1 CDS era NC_012912.1 1232976 1233881 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1232976..1233881 Dickeya zeae Ech1591 8120348 YP_003003421.1 CDS Dd1591_1070 NC_012912.1 1233893 1234627 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: eca:ECA3276 DNA repair protein RecO; DNA repair protein RecO 1233893..1234627 Dickeya zeae Ech1591 8120349 YP_003003422.1 CDS Dd1591_1071 NC_012912.1 1234699 1235430 D KEGG: eca:ECA3275 pyridoxal phosphate biosynthetic protein PdxJ; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 1234699..1235430 Dickeya zeae Ech1591 8120350 YP_003003423.1 CDS acpS NC_012912.1 1235430 1235810 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1235430..1235810 Dickeya zeae Ech1591 8120351 YP_003003424.1 CDS Dd1591_1073 NC_012912.1 1235835 1236098 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: esa:ESA_00697 hypothetical protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(1235835..1236098) Dickeya zeae Ech1591 8120352 YP_003003425.1 CDS Dd1591_1074 NC_012912.1 1236459 1237235 D in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein 1236459..1237235 Dickeya zeae Ech1591 8120353 YP_003003426.1 CDS Dd1591_1075 NC_012912.1 1238015 1239532 D KEGG: eca:ECA3270 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS/PAC and GAF sensors-containing diguanylate cyclase 1238015..1239532 Dickeya zeae Ech1591 8118227 YP_003003427.1 CDS Dd1591_1076 NC_012912.1 1239550 1240374 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: eca:ECA3269 HlyD family secretion protein; biotin/lipoyl attachment domain-containing protein complement(1239550..1240374) Dickeya zeae Ech1591 8118228 YP_003003428.1 CDS Dd1591_1077 NC_012912.1 1240361 1242541 R KEGG: eca:ECA3268 putative toxin secretion ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase complement(1240361..1242541) Dickeya zeae Ech1591 8118229 YP_003003429.1 CDS Dd1591_1078 NC_012912.1 1243122 1243463 D KEGG: eca:ECA3265 hypothetical protein; hypothetical protein 1243122..1243463 Dickeya zeae Ech1591 8118230 YP_003003430.1 CDS murQ NC_012912.1 1243589 1244530 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 1243589..1244530 Dickeya zeae Ech1591 8118231 YP_003003431.1 CDS Dd1591_1080 NC_012912.1 1244530 1245036 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: eca:ECA3260 tRNA-specific adenosine deaminase; CMP/dCMP deaminase zinc-binding 1244530..1245036 Dickeya zeae Ech1591 8118232 YP_003003432.1 CDS Dd1591_1081 NC_012912.1 1245047 1246504 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1245047..1246504) Dickeya zeae Ech1591 8118233 YP_003003433.1 CDS Dd1591_1082 NC_012912.1 1246779 1250666 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1246779..1250666 Dickeya zeae Ech1591 8118234 YP_003003434.1 CDS Dd1591_1083 NC_012912.1 1251368 1252801 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eca:ECA3257 two-component system sensor kinase; histidine kinase 1251368..1252801 Dickeya zeae Ech1591 8118235 YP_003003435.1 CDS Dd1591_1084 NC_012912.1 1252804 1253589 D KEGG: eca:ECA3256 hypothetical protein; hypothetical protein 1252804..1253589 Dickeya zeae Ech1591 8118236 YP_003003436.1 CDS Dd1591_1085 NC_012912.1 1253586 1254923 D PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: eca:ECA3255 two-component system response regulator; putative two component, sigma54 specific, transcriptional regulator, Fis family 1253586..1254923 Dickeya zeae Ech1591 8118237 YP_003003437.1 CDS Dd1591_1086 NC_012912.1 1255009 1255347 D PFAM: nitrogen regulatory protein P-II; KEGG: eca:ECA3254 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 1255009..1255347 Dickeya zeae Ech1591 8118238 YP_003003438.1 CDS Dd1591_1087 NC_012912.1 1255416 1256516 R PFAM: Pectinesterase; KEGG: eca:ECA3253 pectinesterase A; pectinesterase complement(1255416..1256516) Dickeya zeae Ech1591 8118239 YP_003003439.1 CDS Dd1591_1088 NC_012912.1 1256599 1258254 R KEGG: eca:ECA3252 pectin acetylesterase; pectin acetylesterase complement(1256599..1258254) Dickeya zeae Ech1591 8118240 YP_003003440.1 CDS Dd1591_1089 NC_012912.1 1258332 1259489 R PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: xcb:XC_3590 pectate lyase; pectate lyase/Amb allergen complement(1258332..1259489) Dickeya zeae Ech1591 8118241 YP_003003441.1 CDS Dd1591_1090 NC_012912.1 1259965 1261182 R PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: xca:xccb100_3711 exported pectate lyase; pectate lyase/Amb allergen complement(1259965..1261182) Dickeya zeae Ech1591 8118242 YP_003003442.1 CDS Dd1591_1091 NC_012912.1 1261648 1262826 R PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: xcc:XCC0645 pectate lyase; pectate lyase/Amb allergen complement(1261648..1262826) Dickeya zeae Ech1591 8118243 YP_003003443.1 CDS Dd1591_1092 NC_012912.1 1263309 1264496 R PFAM: globin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: eca:ECA3251 nitric oxide dioxygenase; globin complement(1263309..1264496) Dickeya zeae Ech1591 8118244 YP_003003444.1 CDS glyA NC_012912.1 1264831 1266084 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1264831..1266084 Dickeya zeae Ech1591 8118245 YP_003003445.1 CDS Dd1591_1094 NC_012912.1 1266220 1267413 D putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter 1266220..1267413 Dickeya zeae Ech1591 8118246 YP_003003446.1 CDS Dd1591_1095 NC_012912.1 1267413 1268075 D PFAM: protein of unknown function DUF1007; KEGG: eca:ECA3248 hypothetical protein; hypothetical protein 1267413..1268075 Dickeya zeae Ech1591 8118247 YP_003003447.1 CDS Dd1591_1096 NC_012912.1 1268066 1269103 D PFAM: high-affinity nickel-transporter; KEGG: eca:ECA3247 hypothetical protein; high-affinity nickel-transporter 1268066..1269103 Dickeya zeae Ech1591 8118248 YP_003003448.1 CDS Dd1591_1097 NC_012912.1 1269431 1270552 D PFAM: periplasmic binding protein; KEGG: eca:ECA3246 putative periplasmic substrate-binding transport protein; periplasmic binding protein 1269431..1270552 Dickeya zeae Ech1591 8118249 YP_003003449.1 CDS Dd1591_1098 NC_012912.1 1270662 1271453 R PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: eca:ECA3243 putative ferric-enterobactin ABC transporter ATP-binding protein; ABC transporter complement(1270662..1271453) Dickeya zeae Ech1591 8118250 YP_003003450.1 CDS Dd1591_1099 NC_012912.1 1271450 1272532 R PFAM: transport system permease protein; KEGG: eca:ECA3242 ABC transporter permease; transport system permease protein complement(1271450..1272532) Dickeya zeae Ech1591 8118251 YP_003003451.1 CDS Dd1591_1100 NC_012912.1 1272536 1273660 R KEGG: eca:ECA3241 ABC transporter, substrate binding protein; ABC transporter substrate-binding protein complement(1272536..1273660) Dickeya zeae Ech1591 8118252 YP_003003452.1 CDS Dd1591_1101 NC_012912.1 1273820 1274623 R PFAM: inositol monophosphatase; KEGG: eca:ECA3240 inositol monophosphatase; inositol monophosphatase complement(1273820..1274623) Dickeya zeae Ech1591 8118253 YP_003003453.1 CDS Dd1591_1102 NC_012912.1 1274751 1275500 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: eca:ECA3239 putative RNA methyltransferase; RNA methyltransferase, TrmH family, group 1 1274751..1275500 Dickeya zeae Ech1591 8118254 YP_003003454.1 CDS Dd1591_1103 NC_012912.1 1275626 1276120 D regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 1275626..1276120 Dickeya zeae Ech1591 8118255 YP_003003455.1 CDS Dd1591_1104 NC_012912.1 1276179 1277393 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1276179..1277393 Dickeya zeae Ech1591 8118256 YP_003003456.1 CDS Dd1591_1105 NC_012912.1 1277418 1277804 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: eca:ECA3236 scaffold protein; FeS cluster assembly scaffold IscU 1277418..1277804 Dickeya zeae Ech1591 8118257 YP_003003457.1 CDS iscA NC_012912.1 1277833 1278156 D forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 1277833..1278156 Dickeya zeae Ech1591 8118258 YP_003003458.1 CDS hscB NC_012912.1 1278254 1278772 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1278254..1278772 Dickeya zeae Ech1591 8118259 YP_003003459.1 CDS hscA NC_012912.1 1278847 1280697 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1278847..1280697 Dickeya zeae Ech1591 8118260 YP_003003460.1 CDS Dd1591_1109 NC_012912.1 1280699 1281034 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: cko:CKO_00256 hypothetical protein; ferredoxin, 2Fe-2S type, ISC system 1280699..1281034 Dickeya zeae Ech1591 8118261 YP_003003461.1 CDS Dd1591_1110 NC_012912.1 1281046 1281246 D TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: stm:STM2537 hypothetical protein; FeS assembly protein IscX 1281046..1281246 Dickeya zeae Ech1591 8118262 YP_003003462.1 CDS Dd1591_1111 NC_012912.1 1281347 1282642 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 1281347..1282642 Dickeya zeae Ech1591 8118263 YP_003003463.1 CDS Dd1591_1112 NC_012912.1 1282737 1283531 D enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 1282737..1283531 Dickeya zeae Ech1591 8118264 YP_003003464.1 CDS sseA NC_012912.1 1283917 1284771 R catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase complement(1283917..1284771) Dickeya zeae Ech1591 8118265 YP_003003465.1 CDS ndk NC_012912.1 1285178 1285609 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1285178..1285609 Dickeya zeae Ech1591 8118266 YP_003003466.1 CDS Dd1591_1115 NC_012912.1 1285778 1286956 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1285778..1286956 Dickeya zeae Ech1591 8118267 YP_003003467.1 CDS Dd1591_1116 NC_012912.1 1287159 1287914 D KEGG: eca:ECA3222 hypothetical protein; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1287159..1287914 Dickeya zeae Ech1591 8118268 YP_003003468.1 CDS Dd1591_1117 NC_012912.1 1287904 1288887 D SMART: helix-turn-helix domain protein; KEGG: eca:ECA3221 hypothetical protein; cytoskeletal protein RodZ 1287904..1288887 Dickeya zeae Ech1591 8118269 YP_003003469.1 CDS ispG NC_012912.1 1288924 1290045 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1288924..1290045 Dickeya zeae Ech1591 8118270 YP_003003470.1 CDS hisS NC_012912.1 1290198 1291472 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1290198..1291472 Dickeya zeae Ech1591 8118271 YP_003003471.1 CDS Dd1591_1120 NC_012912.1 1291486 1292106 D KEGG: eca:ECA3218 hypothetical protein; hypothetical protein 1291486..1292106 Dickeya zeae Ech1591 8118272 YP_003003472.1 CDS Dd1591_1121 NC_012912.1 1292117 1293298 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1292117..1293298 Dickeya zeae Ech1591 8118273 YP_003003473.1 CDS engA NC_012912.1 1293439 1294932 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1293439..1294932 Dickeya zeae Ech1591 8118274 YP_003003474.1 CDS Dd1591_1123 NC_012912.1 1295022 1295300 D PFAM: protein of unknown function DUF1407; KEGG: spe:Spro_3603 hypothetical protein; hypothetical protein 1295022..1295300 Dickeya zeae Ech1591 8118275 YP_003003475.1 CDS Dd1591_1124 NC_012912.1 1295304 1295672 R KEGG: eca:ECA3212 hypothetical protein; hypothetical protein complement(1295304..1295672) Dickeya zeae Ech1591 8118276 YP_003003476.1 CDS Dd1591_1125 NC_012912.1 1295653 1296702 R PFAM: peptidase M4 thermolysin; Peptidase M4 thermolysin; KEGG: eca:ECA3211 extracellular metalloprotease; peptidase M4 thermolysin complement(1295653..1296702) Dickeya zeae Ech1591 8118277 YP_003003477.1 CDS xseA NC_012912.1 1296792 1298177 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1296792..1298177) Dickeya zeae Ech1591 8118278 YP_003003478.1 CDS Dd1591_1127 NC_012912.1 1298349 1299812 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1298349..1299812 Dickeya zeae Ech1591 8118279 YP_003003479.1 CDS Dd1591_1128 NC_012912.1 1299900 1301477 D TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; KEGG: eca:ECA3208 bifunctional GMP synthase/glutamine amidotransferase protein; GMP synthase, large subunit 1299900..1301477 Dickeya zeae Ech1591 8118280 YP_003003480.1 CDS Dd1591_1129 NC_012912.1 1301537 1301668 R hypothetical protein complement(1301537..1301668) Dickeya zeae Ech1591 8118281 YP_003003481.1 CDS Dd1591_1130 NC_012912.1 1301778 1303034 D PFAM: integrase family protein; KEGG: bam:Bamb_2021 phage integrase family protein; integrase family protein 1301778..1303034 Dickeya zeae Ech1591 8118282 YP_003003482.1 CDS Dd1591_1131 NC_012912.1 1303102 1303371 D KEGG: dia:Dtpsy_1263 hypothetical protein; hypothetical protein 1303102..1303371 Dickeya zeae Ech1591 8118283 YP_003003483.1 CDS Dd1591_1132 NC_012912.1 1303374 1303898 D PFAM: Prophage CP4-57 regulatory; KEGG: rme:Rmet_1467 prophage CP4-57 regulatory; phage transcriptional regulator AlpA 1303374..1303898 Dickeya zeae Ech1591 8118284 YP_003003484.1 CDS Dd1591_1133 NC_012912.1 1303911 1304300 R PFAM: Prophage CP4-57 regulatory; KEGG: rme:Rmet_1468 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA complement(1303911..1304300) Dickeya zeae Ech1591 8118285 YP_003003485.1 CDS Dd1591_1134 NC_012912.1 1304665 1305174 D TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: shn:Shewana3_1252 DNA repair protein RadC; DNA repair protein RadC 1304665..1305174 Dickeya zeae Ech1591 8118286 YP_003003486.1 CDS Dd1591_1135 NC_012912.1 1305765 1306076 D PFAM: protein of unknown function DUF736; KEGG: pna:Pnap_4161 hypothetical protein; hypothetical protein 1305765..1306076 Dickeya zeae Ech1591 8118287 YP_003003487.1 CDS Dd1591_1136 NC_012912.1 1306446 1307081 R KEGG: bvi:Bcep1808_0258 hypothetical protein; hypothetical protein complement(1306446..1307081) Dickeya zeae Ech1591 8118288 YP_003003488.1 CDS Dd1591_1137 NC_012912.1 1307143 1308651 R KEGG: reu:Reut_A2939 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase complement(1307143..1308651) Dickeya zeae Ech1591 8118289 YP_003003489.1 CDS Dd1591_1138 NC_012912.1 1309096 1310118 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: spl:Spea_4213 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 1309096..1310118 Dickeya zeae Ech1591 8118290 YP_003003490.1 CDS Dd1591_1140 NC_012912.1 1310914 1311699 D KEGG: bmj:BMULJ_00913 hypothetical protein; hypothetical protein 1310914..1311699 Dickeya zeae Ech1591 8118292 YP_003003491.1 CDS Dd1591_1141 NC_012912.1 1311783 1312079 D KEGG: pna:Pnap_4165 hypothetical protein; hypothetical protein 1311783..1312079 Dickeya zeae Ech1591 8118293 YP_003003492.1 CDS Dd1591_1142 NC_012912.1 1312106 1312918 D KEGG: pna:Pnap_4166 putative replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein 1312106..1312918 Dickeya zeae Ech1591 8118294 YP_003003493.1 CDS Dd1591_1144 NC_012912.1 1313904 1314635 D TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: aav:Aave_0730 putative conjugal transfer TrbJ signal peptide protein; conjugal transfer protein TrbJ 1313904..1314635 Dickeya zeae Ech1591 8118296 YP_003003494.1 CDS Dd1591_1145 NC_012912.1 1314635 1315798 D TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: dac:Daci_2693 P-type conjugative transfer protein TrbL; P-type conjugative transfer protein TrbL 1314635..1315798 Dickeya zeae Ech1591 8118297 YP_003003495.1 CDS Dd1591_1146 NC_012912.1 1315801 1316505 D PFAM: Conjugal transfer protein; KEGG: shn:Shewana3_1289 conjugal transfer protein; conjugal transfer protein TrbF 1315801..1316505 Dickeya zeae Ech1591 8118298 YP_003003496.1 CDS Dd1591_1147 NC_012912.1 1316502 1317383 D TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pau:PA14_30860 TrbG-like protein; P-type conjugative transfer protein TrbG 1316502..1317383 Dickeya zeae Ech1591 8118299 YP_003003497.1 CDS Dd1591_1148 NC_012912.1 1317386 1318624 D PFAM: conjugation TrbI family protein; KEGG: shn:Shewana3_1291 conjugation TrbI family protein; conjugation TrbI family protein 1317386..1318624 Dickeya zeae Ech1591 8118300 YP_003003498.1 CDS Dd1591_1149 NC_012912.1 1318670 1318981 R PFAM: plasmid stabilization system; KEGG: rle:pRL110045 hypothetical protein; plasmid stabilization system protein complement(1318670..1318981) Dickeya zeae Ech1591 8118301 YP_003003499.1 CDS Dd1591_1150 NC_012912.1 1318978 1319262 R KEGG: vch:VCA0504 RelB protein; RelB protein complement(1318978..1319262) Dickeya zeae Ech1591 8118302 YP_003003500.1 CDS Dd1591_1152 NC_012912.1 1319741 1320142 R PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: eca:ECA1665 DNA-binding protein Hns; histone family protein nucleoid-structuring protein H-NS complement(1319741..1320142) Dickeya zeae Ech1591 8118304 YP_003003501.1 CDS Dd1591_1154 NC_012912.1 1320444 1320662 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu4299 hypothetical protein; XRE family transcriptional regulator complement(1320444..1320662) Dickeya zeae Ech1591 8118306 YP_003003502.1 CDS Dd1591_1155 NC_012912.1 1320755 1320985 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu4299 hypothetical protein; XRE family transcriptional regulator complement(1320755..1320985) Dickeya zeae Ech1591 8118707 YP_003003503.1 CDS Dd1591_1156 NC_012912.1 1321088 1321333 D KEGG: eca:ECA0513 putative phage transcriptional regulator; putative transcriptional regulator Nlp 1321088..1321333 Dickeya zeae Ech1591 8118708 YP_003003504.1 CDS Dd1591_1158 NC_012912.1 1321643 1321912 D PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: eca:ECA3392 hypothetical protein; hypothetical protein 1321643..1321912 Dickeya zeae Ech1591 8118710 YP_003003505.1 CDS Dd1591_1159 NC_012912.1 1322062 1322496 R KEGG: msu:MS0414 hypothetical protein; hypothetical protein complement(1322062..1322496) Dickeya zeae Ech1591 8118711 YP_003003506.1 CDS Dd1591_1160 NC_012912.1 1322501 1326772 R TIGRFAM: YD repeat protein; PFAM: PAAR repeat-containing protein; YD repeat-containing protein; KEGG: eca:ECA4278 rhs-family protein; YD repeat protein complement(1322501..1326772) Dickeya zeae Ech1591 8118712 YP_003003507.1 CDS Dd1591_1161 NC_012912.1 1326784 1327191 R PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein; hypothetical protein complement(1326784..1327191) Dickeya zeae Ech1591 8118713 YP_003003508.1 CDS Dd1591_1162 NC_012912.1 1327205 1329058 R TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA2867 putative rhs accessory genetic element; type VI secretion system Vgr family protein complement(1327205..1329058) Dickeya zeae Ech1591 8118714 YP_003003509.1 CDS Dd1591_1163 NC_012912.1 1329170 1329688 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein; Hcp1 family type VI secretion system effector complement(1329170..1329688) Dickeya zeae Ech1591 8118715 YP_003003510.1 CDS Dd1591_1164 NC_012912.1 1330039 1330173 D hypothetical protein 1330039..1330173 Dickeya zeae Ech1591 8118716 YP_003003511.1 CDS Dd1591_1165 NC_012912.1 1330477 1330650 R hypothetical protein complement(1330477..1330650) Dickeya zeae Ech1591 8118717 YP_003003512.1 CDS Dd1591_1166 NC_012912.1 1330818 1331465 R PFAM: regulatory protein TetR; KEGG: ara:Arad_0508 transcriptional regulator protein; TetR family transcriptional regulator complement(1330818..1331465) Dickeya zeae Ech1591 8118718 YP_003003513.1 CDS Dd1591_1167 NC_012912.1 1331724 1331819 D hypothetical protein 1331724..1331819 Dickeya zeae Ech1591 8118719 YP_003003514.1 CDS Dd1591_1168 NC_012912.1 1331836 1332729 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfo:Pfl01_3057 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1331836..1332729 Dickeya zeae Ech1591 8118720 YP_003003515.1 CDS Dd1591_1169 NC_012912.1 1332815 1333192 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfo:Pfl01_3056 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1332815..1333192 Dickeya zeae Ech1591 8118721 YP_003003516.1 CDS Dd1591_1170 NC_012912.1 1333387 1333773 R KEGG: eta:ETA_05100 hypothetical protein; hypothetical protein complement(1333387..1333773) Dickeya zeae Ech1591 8118722 YP_003003517.1 CDS Dd1591_1171 NC_012912.1 1333892 1334302 R PFAM: helix-turn-helix HxlR type; transcriptional regulator PadR family protein; KEGG: xca:xccb100_2343 putative HTH-type transcriptional regulator; HxlR family transcriptional regulator complement(1333892..1334302) Dickeya zeae Ech1591 8118723 YP_003003518.1 CDS Dd1591_1172 NC_012912.1 1334392 1335252 D PFAM: NmrA family protein; KEGG: xca:xccb100_2338 hypothetical protein; NmrA family protein 1334392..1335252 Dickeya zeae Ech1591 8118724 YP_003003519.1 CDS Dd1591_1173 NC_012912.1 1335396 1336031 R PFAM: carbonic anhydrase; KEGG: spe:Spro_0566 carbonate dehydratase; carbonate dehydratase complement(1335396..1336031) Dickeya zeae Ech1591 8118725 YP_003003520.1 CDS Dd1591_1174 NC_012912.1 1336170 1337129 R PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: stt:t1257 putative pathogenicity island protein; hypothetical protein complement(1336170..1337129) Dickeya zeae Ech1591 8118726 YP_003003521.1 CDS Dd1591_1175 NC_012912.1 1337278 1338498 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: kpe:KPK_4915 cyclopropane-fatty-acyl-phospholipid synthase family protein; Cyclopropane-fatty-acyl-phospholipid synthase complement(1337278..1338498) Dickeya zeae Ech1591 8118727 YP_003003522.1 CDS Dd1591_1176 NC_012912.1 1338495 1339238 R PFAM: protein of unknown function DUF1365; KEGG: ent:Ent638_1488 hypothetical protein; hypothetical protein complement(1338495..1339238) Dickeya zeae Ech1591 8118728 YP_003003523.1 CDS Dd1591_1177 NC_012912.1 1339231 1340493 R PFAM: FAD dependent oxidoreductase; KEGG: ent:Ent638_1489 amine oxidase; FAD dependent oxidoreductase complement(1339231..1340493) Dickeya zeae Ech1591 8118729 YP_003003524.1 CDS Dd1591_1178 NC_012912.1 1340490 1341209 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: ent:Ent638_1490 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1340490..1341209) Dickeya zeae Ech1591 8118730 YP_003003525.1 CDS Dd1591_1179 NC_012912.1 1341206 1341640 R KEGG: kpe:KPK_4911 hypothetical protein; hypothetical protein complement(1341206..1341640) Dickeya zeae Ech1591 8118731 YP_003003526.1 CDS Dd1591_1180 NC_012912.1 1342056 1342784 R PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ent:Ent638_0064 MerR family transcriptional regulator; MerR family transcriptional regulator complement(1342056..1342784) Dickeya zeae Ech1591 8118732 YP_003003527.1 CDS Dd1591_1181 NC_012912.1 1343032 1343811 D KEGG: eca:ECA3203 hypothetical protein; hypothetical protein 1343032..1343811 Dickeya zeae Ech1591 8118733 YP_003003528.1 CDS Dd1591_1182 NC_012912.1 1344093 1344812 D PFAM: protein of unknown function DUF969; KEGG: esa:ESA_02631 hypothetical protein; hypothetical protein 1344093..1344812 Dickeya zeae Ech1591 8118734 YP_003003529.1 CDS Dd1591_1183 NC_012912.1 1344809 1345795 D PFAM: protein of unknown function DUF979; KEGG: esa:ESA_02630 hypothetical protein; hypothetical protein 1344809..1345795 Dickeya zeae Ech1591 8118735 YP_003003530.1 CDS Dd1591_1184 NC_012912.1 1345848 1346867 D KEGG: esa:ESA_02629 hypothetical protein; hypothetical protein 1345848..1346867 Dickeya zeae Ech1591 8118736 YP_003003531.1 CDS Dd1591_1185 NC_012912.1 1347028 1347420 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eca:ECA3501 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 1347028..1347420 Dickeya zeae Ech1591 8118737 YP_003003532.1 CDS Dd1591_1186 NC_012912.1 1347437 1348105 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sec:SC1631 putative ABC-type transport system membrane spanning protein; polar amino acid ABC transporter permease complement(1347437..1348105) Dickeya zeae Ech1591 8118738 YP_003003533.1 CDS Dd1591_1187 NC_012912.1 1348107 1348832 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: see:SNSL254_A1751 ABC transporter ATP-binding subunit; ABC transporter complement(1348107..1348832) Dickeya zeae Ech1591 8118739 YP_003003534.1 CDS Dd1591_1188 NC_012912.1 1348810 1349511 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sea:SeAg_B1523 putative ABC transporter permease component; polar amino acid ABC transporter permease complement(1348810..1349511) Dickeya zeae Ech1591 8118740 YP_003003535.1 CDS Dd1591_1189 NC_012912.1 1349518 1350276 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: stt:t1536 putative periplasmic amino acid-binding protein; extracellular solute-binding protein family 3 complement(1349518..1350276) Dickeya zeae Ech1591 8118741 YP_003003536.1 CDS Dd1591_1190 NC_012912.1 1351025 1351819 D KEGG: eca:ECA3197 hydroxyethylthiazole kinase; TIGRFAM: hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 1351025..1351819 Dickeya zeae Ech1591 8118742 YP_003003537.1 CDS Dd1591_1191 NC_012912.1 1351816 1352619 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 1351816..1352619 Dickeya zeae Ech1591 8118743 YP_003003538.1 CDS Dd1591_1192 NC_012912.1 1353052 1353906 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: eca:ECA1396 hypothetical protein; xylose isomerase domain-containing protein 1353052..1353906 Dickeya zeae Ech1591 8118744 YP_003003539.1 CDS Dd1591_1193 NC_012912.1 1354150 1355130 R PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: eca:ECA1397 LacI family transcriptional regulator; LacI family transcriptional regulator complement(1354150..1355130) Dickeya zeae Ech1591 8118745 YP_003003540.1 CDS Dd1591_1194 NC_012912.1 1355254 1356408 R PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: eca:ECA1398 putativeoxidoreductase; oxidoreductase domain-containing protein complement(1355254..1356408) Dickeya zeae Ech1591 8118746 YP_003003541.1 CDS Dd1591_1195 NC_012912.1 1356405 1357475 R PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: eca:ECA1399 hypothetical protein; xylose isomerase domain-containing protein complement(1356405..1357475) Dickeya zeae Ech1591 8118747 YP_003003542.1 CDS Dd1591_1196 NC_012912.1 1357497 1358744 R PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: eca:ECA1400 putative nucleoside H+ symporter; nucleoside:H symporter complement(1357497..1358744) Dickeya zeae Ech1591 8118748 YP_003003543.1 CDS Dd1591_1197 NC_012912.1 1358971 1359750 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: spe:Spro_2394 xylose isomerase domain-containing protein; xylose isomerase domain-containing protein complement(1358971..1359750) Dickeya zeae Ech1591 8118749 YP_003003544.1 CDS Dd1591_1198 NC_012912.1 1360021 1360428 D PFAM: phosphate-starvation-inducible E; KEGG: eca:ECA3195 phosphate-starvation-inducible protein PsiE; phosphate-starvation-inducible protein PsiE 1360021..1360428 Dickeya zeae Ech1591 8118750 YP_003003545.1 CDS Dd1591_1199 NC_012912.1 1360614 1361990 R PFAM: peptidase U32; KEGG: eca:ECA3193 putative protease; peptidase U32 complement(1360614..1361990) Dickeya zeae Ech1591 8118751 YP_003003546.1 CDS Dd1591_1200 NC_012912.1 1362159 1363121 R KEGG: eca:ECA3192 hypothetical protein; Glutathione transferase complement(1362159..1363121) Dickeya zeae Ech1591 8118752 YP_003003547.1 CDS Dd1591_1201 NC_012912.1 1363255 1363986 R response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR complement(1363255..1363986) Dickeya zeae Ech1591 8118753 YP_003003548.1 CDS Dd1591_1202 NC_012912.1 1364000 1365358 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: eca:ECA3188 signal transduction histidine-protein kinase BaeS; signal transduction histidine-protein kinase BaeS complement(1364000..1365358) Dickeya zeae Ech1591 8118754 YP_003003549.1 CDS Dd1591_1203 NC_012912.1 1365367 1366770 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA3187 multidrug efflux system protein MdtE; multidrug efflux system protein MdtE complement(1365367..1366770) Dickeya zeae Ech1591 8118755 YP_003003550.1 CDS Dd1591_1204 NC_012912.1 1366865 1369954 R Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC complement(1366865..1369954) Dickeya zeae Ech1591 8118756 YP_003003551.1 CDS Dd1591_1205 NC_012912.1 1369951 1373091 R Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB complement(1369951..1373091) Dickeya zeae Ech1591 8118757 YP_003003552.1 CDS Dd1591_1206 NC_012912.1 1373091 1374350 R Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA complement(1373091..1374350) Dickeya zeae Ech1591 8118758 YP_003003553.1 CDS Dd1591_1207 NC_012912.1 1374560 1375741 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; nucleoside recognition domain protein; Na+ dependent nucleoside transporter; KEGG: spe:Spro_3416 nucleoside transporter; nucleoside transporter complement(1374560..1375741) Dickeya zeae Ech1591 8118759 YP_003003554.1 CDS Dd1591_1208 NC_012912.1 1376000 1376962 D PFAM: aldo/keto reductase; KEGG: eca:ECA3182 oxidoreductase; aldo/keto reductase 1376000..1376962 Dickeya zeae Ech1591 8118760 YP_003003555.1 CDS Dd1591_1209 NC_012912.1 1377443 1378510 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A complement(1377443..1378510) Dickeya zeae Ech1591 8118761 YP_003003556.1 CDS Dd1591_1210 NC_012912.1 1378875 1379369 R PFAM: cell division inhibitor SulA; KEGG: eca:ECA1752 SOS cell division inhibitor; SOS cell division inhibitor complement(1378875..1379369) Dickeya zeae Ech1591 8118762 YP_003003557.1 CDS Dd1591_1211 NC_012912.1 1379589 1380218 D PFAM: TfoX domain protein; KEGG: eca:ECA1753 hypothetical protein; regulator of competence-specific genes 1379589..1380218 Dickeya zeae Ech1591 8118763 YP_003003558.1 CDS Dd1591_1212 NC_012912.1 1380215 1382410 R TIGRFAM: hypothetical protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: eca:ECA1754 hypothetical protein; hypothetical protein complement(1380215..1382410) Dickeya zeae Ech1591 8118764 YP_003003559.1 CDS Dd1591_1213 NC_012912.1 1382429 1382875 R PFAM: protein of unknown function DUF307; KEGG: efe:EFER_1098 conserved hypothetical protein; putative inner membrane protein; hypothetical protein complement(1382429..1382875) Dickeya zeae Ech1591 8118765 YP_003003560.1 CDS helD NC_012912.1 1383029 1385086 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1383029..1385086 Dickeya zeae Ech1591 8118766 YP_003003561.1 CDS mgsA NC_012912.1 1385166 1385624 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1385166..1385624) Dickeya zeae Ech1591 8118767 YP_003003562.1 CDS Dd1591_1216 NC_012912.1 1385752 1386399 R KEGG: spe:Spro_1761 hypothetical protein; hypothetical protein complement(1385752..1386399) Dickeya zeae Ech1591 8118768 YP_003003563.1 CDS Dd1591_1217 NC_012912.1 1386648 1387061 D PFAM: CoA-binding domain protein; KEGG: eca:ECA1759 putative CoA binding protein; CoA-binding domain-containing protein 1386648..1387061 Dickeya zeae Ech1591 8118769 YP_003003564.1 CDS Dd1591_1218 NC_012912.1 1387141 1387449 R TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: eca:ECA1760 hypothetical protein; heat shock protein HspQ complement(1387141..1387449) Dickeya zeae Ech1591 8118770 YP_003003565.1 CDS Dd1591_1219 NC_012912.1 1387651 1387929 D PFAM: acylphosphatase; KEGG: eca:ECA1761 putative acylphosphatase; acylphosphatase 1387651..1387929 Dickeya zeae Ech1591 8118771 YP_003003566.1 CDS Dd1591_1220 NC_012912.1 1387997 1388326 R TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: ypb:YPTS_1571 TusE/DsrC/DsvC family sulfur relay protein; TusE/DsrC/DsvC family sulfur relay protein complement(1387997..1388326) Dickeya zeae Ech1591 8118772 YP_003003567.1 CDS Dd1591_1221 NC_012912.1 1388477 1389136 R PFAM: protein of unknown function UPF0005; KEGG: eca:ECA1763 hypothetical protein; hypothetical protein complement(1388477..1389136) Dickeya zeae Ech1591 8118773 YP_003003568.1 CDS Dd1591_1222 NC_012912.1 1390103 1390360 R hypothetical protein complement(1390103..1390360) Dickeya zeae Ech1591 8118775 YP_003003569.1 CDS Dd1591_1223 NC_012912.1 1390527 1390652 R hypothetical protein complement(1390527..1390652) Dickeya zeae Ech1591 8118776 YP_003003570.1 CDS Dd1591_1224 NC_012912.1 1390761 1391605 R KEGG: plu:plu4519 IS427 family transposase; transposase and inactivated derivatives-like protein complement(join(1390761..1391255,1391255..1391605)) Dickeya zeae Ech1591 8118777 YP_003003571.1 CDS Dd1591_1225 NC_012912.1 1391748 1392905 R PFAM: acyltransferase 3; KEGG: bam:Bamb_3866 acyltransferase 3; acyltransferase 3 complement(1391748..1392905) Dickeya zeae Ech1591 8118778 YP_003003572.1 CDS Dd1591_1226 NC_012912.1 1393360 1393458 D hypothetical protein 1393360..1393458 Dickeya zeae Ech1591 8118779 YP_003003573.1 CDS Dd1591_1227 NC_012912.1 1393486 1393785 D PFAM: transposase IS3/IS911 family protein; KEGG: eci:UTI89_C4918 hypothetical protein; transposase IS3/IS911 family protein 1393486..1393785 Dickeya zeae Ech1591 8118780 YP_003003574.1 CDS Dd1591_1230 NC_012912.1 1394914 1395438 D PFAM: isochorismatase hydrolase; KEGG: eca:ECA1767 isochorismatase family protein; isochorismatase hydrolase 1394914..1395438 Dickeya zeae Ech1591 8118783 YP_003003575.1 CDS Dd1591_1231 NC_012912.1 1395449 1395823 R KEGG: ent:Ent638_2008 putative cytoplasmic protein; putative cytoplasmic protein complement(1395449..1395823) Dickeya zeae Ech1591 8118784 YP_003003576.1 CDS Dd1591_1232 NC_012912.1 1396030 1396461 D PFAM: UspA domain protein; KEGG: eca:ECA1769 hypothetical protein; UspA domain-containing protein 1396030..1396461 Dickeya zeae Ech1591 8118785 YP_003003577.1 CDS Dd1591_1233 NC_012912.1 1396510 1396776 R PFAM: zinc finger DksA/TraR C4-type; KEGG: pmr:PMI2410 zinc-finger; hypothetical protein complement(1396510..1396776) Dickeya zeae Ech1591 8118786 YP_003003578.1 CDS Dd1591_1235 NC_012912.1 1397385 1398914 R PFAM: Ppx/GppA phosphatase; KEGG: eca:ECA3165 exopolyphosphatase; exopolyphosphatase complement(1397385..1398914) Dickeya zeae Ech1591 8118628 YP_003003579.1 CDS Dd1591_1236 NC_012912.1 1398919 1400988 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(1398919..1400988) Dickeya zeae Ech1591 8118629 YP_003003580.1 CDS Dd1591_1237 NC_012912.1 1401211 1403442 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3163 phosphate ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 1401211..1403442 Dickeya zeae Ech1591 8118630 YP_003003581.1 CDS Dd1591_1238 NC_012912.1 1403439 1405085 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3162 phosphate ABC transporter permease protein; phosphate ABC transporter permease 1403439..1405085 Dickeya zeae Ech1591 8118631 YP_003003582.1 CDS Dd1591_1239 NC_012912.1 1405103 1405918 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1405103..1405918 Dickeya zeae Ech1591 8118632 YP_003003583.1 CDS Dd1591_1240 NC_012912.1 1406115 1406540 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: eca:ECA3160 putative transcriptional regulator; helix-turn-helix domain-containing protein 1406115..1406540 Dickeya zeae Ech1591 8118633 YP_003003584.1 CDS Dd1591_1241 NC_012912.1 1406663 1408033 R KEGG: eca:ECA3159 L-serine dehydratase 2; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(1406663..1408033) Dickeya zeae Ech1591 8118634 YP_003003585.1 CDS Dd1591_1242 NC_012912.1 1408098 1409381 R TIGRFAM: serine transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: eca:ECA3158 serine transporter; serine transporter complement(1408098..1409381) Dickeya zeae Ech1591 8118635 YP_003003586.1 CDS Dd1591_1243 NC_012912.1 1409977 1411047 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1409977..1411047) Dickeya zeae Ech1591 8118636 YP_003003587.1 CDS Dd1591_1244 NC_012912.1 1411044 1411553 R KEGG: eca:ECA3156 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(1411044..1411553) Dickeya zeae Ech1591 8118637 YP_003003588.1 CDS Dd1591_1245 NC_012912.1 1411778 1412500 R TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: spe:Spro_1164 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase complement(1411778..1412500) Dickeya zeae Ech1591 8118638 YP_003003589.1 CDS Dd1591_1246 NC_012912.1 1412511 1413005 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: yen:YE3049 peptidyl-prolyl cis-trans isomerase B (rotamase B); peptidyl-prolyl cis-trans isomerase B (rotamase B) complement(1412511..1413005) Dickeya zeae Ech1591 8118639 YP_003003590.1 CDS Dd1591_1247 NC_012912.1 1413344 1413775 D PFAM: DoxX family protein; KEGG: eca:ECA3152 hypothetical protein; DoxX family protein 1413344..1413775 Dickeya zeae Ech1591 8118640 YP_003003591.1 CDS Dd1591_1248 NC_012912.1 1414061 1415446 D KEGG: eca:ECA3151 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); cysteinyl-tRNA synthetase 1414061..1415446 Dickeya zeae Ech1591 8118641 YP_003003592.1 CDS Dd1591_1249 NC_012912.1 1415552 1415764 R KEGG: eca:ECA3150 hypothetical protein; hypothetical protein complement(1415552..1415764) Dickeya zeae Ech1591 8118642 YP_003003593.1 CDS Dd1591_1250 NC_012912.1 1415771 1416640 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1415771..1416640) Dickeya zeae Ech1591 8118643 YP_003003594.1 CDS Dd1591_1251 NC_012912.1 1417112 1419052 D PFAM: Nitrate and nitrite sensing domain protein; chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: eca:ECA0434 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1417112..1419052 Dickeya zeae Ech1591 8118644 YP_003003595.1 CDS Dd1591_1252 NC_012912.1 1419064 1419864 R TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; KEGG: spe:Spro_2076 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(1419064..1419864) Dickeya zeae Ech1591 8118645 YP_003003596.1 CDS Dd1591_1253 NC_012912.1 1419861 1421075 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(1419861..1421075) Dickeya zeae Ech1591 8118646 YP_003003597.1 CDS Dd1591_1254 NC_012912.1 1421323 1422687 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 1421323..1422687 Dickeya zeae Ech1591 8118647 YP_003003598.1 CDS Dd1591_1255 NC_012912.1 1422687 1423235 D PFAM: protein of unknown function DUF886; KEGG: kpn:KPN_01285 hypothetical protein; hypothetical protein 1422687..1423235 Dickeya zeae Ech1591 8118648 YP_003003599.1 CDS Dd1591_1256 NC_012912.1 1423448 1424305 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: kpe:KPK_3146 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein family 3 1423448..1424305 Dickeya zeae Ech1591 8118649 YP_003003600.1 CDS Dd1591_1257 NC_012912.1 1424321 1425043 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_3145 amino acid ABC transporter, permease protein; polar amino acid ABC transporter permease 1424321..1425043 Dickeya zeae Ech1591 8118650 YP_003003601.1 CDS Dd1591_1258 NC_012912.1 1425040 1425756 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_3144 amino acid ABC transporter, permease protein; polar amino acid ABC transporter permease 1425040..1425756 Dickeya zeae Ech1591 8118651 YP_003003602.1 CDS Dd1591_1259 NC_012912.1 1425749 1426531 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kpe:KPK_3143 amino acid ABC transporter, ATP-binding protein; ABC transporter 1425749..1426531 Dickeya zeae Ech1591 8118652 YP_003003603.1 CDS Dd1591_1260 NC_012912.1 1426544 1428115 D KEGG: kpe:KPK_3142 putative histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; histidine ammonia-lyase 1426544..1428115 Dickeya zeae Ech1591 8118653 YP_003003604.1 CDS Dd1591_1261 NC_012912.1 1428098 1428841 R KEGG: yen:YE2460 GntR family transcriptional regulator; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(1428098..1428841) Dickeya zeae Ech1591 8118654 YP_003003605.1 CDS Dd1591_1262 NC_012912.1 1429179 1429943 D PFAM: protein of unknown function UPF0153; KEGG: pfo:Pfl01_4657 hypothetical protein; hypothetical protein 1429179..1429943 Dickeya zeae Ech1591 8118655 YP_003003606.1 CDS Dd1591_1264 NC_012912.1 1430453 1432009 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1430453..1432009 Dickeya zeae Ech1591 8118657 YP_003003607.1 CDS Dd1591_1265 NC_012912.1 1432023 1433714 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1432023..1433714 Dickeya zeae Ech1591 8118658 YP_003003608.1 CDS Dd1591_1266 NC_012912.1 1434245 1434931 R PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: eca:ECA0921 GntR family transcriptional regulator; GntR family transcriptional regulator complement(1434245..1434931) Dickeya zeae Ech1591 8118659 YP_003003609.1 CDS Dd1591_1267 NC_012912.1 1435069 1436541 R PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eca:ECA0920 carbohydrate oxidoreductase; Fructuronate reductase complement(1435069..1436541) Dickeya zeae Ech1591 8118660 YP_003003610.1 CDS Dd1591_1268 NC_012912.1 1436545 1437966 R PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: eca:ECA0919 transport protein; major facilitator superfamily protein complement(1436545..1437966) Dickeya zeae Ech1591 8118661 YP_003003611.1 CDS Dd1591_1269 NC_012912.1 1438488 1439510 R PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: eca:ECA0918 putative dehydrogenase; alcohol dehydrogenase GroES domain-containing protein complement(1438488..1439510) Dickeya zeae Ech1591 8118662 YP_003003612.1 CDS Dd1591_1270 NC_012912.1 1439526 1440740 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: spe:Spro_3563 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein complement(1439526..1440740) Dickeya zeae Ech1591 8118663 YP_003003613.1 CDS Dd1591_1271 NC_012912.1 1440929 1441141 D hypothetical protein 1440929..1441141 Dickeya zeae Ech1591 8118664 YP_003003614.1 CDS Dd1591_1272 NC_012912.1 1441141 1441509 D KEGG: sme:SMc02038 glycerol dehydrogenase; hypothetical protein 1441141..1441509 Dickeya zeae Ech1591 8118665 YP_003003615.1 CDS Dd1591_1273 NC_012912.1 1441649 1442689 R PFAM: Pectate lyase; KEGG: eca:ECA1094 pectate lyase; pectate lyase complement(1441649..1442689) Dickeya zeae Ech1591 8118666 YP_003003616.1 CDS Dd1591_1274 NC_012912.1 1443116 1444327 R KEGG: asa:ASA_3538 hypothetical protein; hypothetical protein complement(1443116..1444327) Dickeya zeae Ech1591 8118667 YP_003003617.1 CDS Dd1591_1275 NC_012912.1 1444800 1445909 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ypb:YPTS_3224 ABC transporter related; ABC transporter complement(1444800..1445909) Dickeya zeae Ech1591 8118668 YP_003003618.1 CDS Dd1591_1276 NC_012912.1 1446268 1447521 D PFAM: extracellular solute-binding protein family 1; KEGG: kpe:KPK_4253 sugar ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein family 1 1446268..1447521 Dickeya zeae Ech1591 8118669 YP_003003619.1 CDS Dd1591_1277 NC_012912.1 1447595 1448902 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_4252 sugar ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 1447595..1448902 Dickeya zeae Ech1591 8118670 YP_003003620.1 CDS Dd1591_1278 NC_012912.1 1448910 1449809 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ypg:YpAngola_A3885 ABC maltose/maltodextrin transporter, permease subunit; binding-protein-dependent transport systems inner membrane component 1448910..1449809 Dickeya zeae Ech1591 8118671 YP_003003621.1 CDS Dd1591_1279 NC_012912.1 1449815 1451014 D PFAM: glycosyl hydrolase 53 domain protein; KEGG: ypg:YpAngola_A3886 glycosy hydrolase family protein; arabinogalactan endo-1,4-beta-galactosidase 1449815..1451014 Dickeya zeae Ech1591 8118672 YP_003003622.1 CDS Dd1591_1280 NC_012912.1 1451151 1453208 D PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: esa:ESA_03417 hypothetical protein; beta-galactosidase 1451151..1453208 Dickeya zeae Ech1591 8118673 YP_003003623.1 CDS Dd1591_1281 NC_012912.1 1453320 1453634 D PFAM: phosphotransferase system PTS EIIB protein; KEGG: kpn:KPN_00432 putative phosphotransferase system PTS; phosphotransferase system PTS EIIB protein 1453320..1453634 Dickeya zeae Ech1591 8118674 YP_003003624.1 CDS Dd1591_1282 NC_012912.1 1453800 1455071 R porin involved in the transport of maltose and maltodextrins; maltoporin complement(1453800..1455071) Dickeya zeae Ech1591 8118675 YP_003003625.1 CDS lacI NC_012912.1 1455339 1456412 D transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; lac repressor 1455339..1456412 Dickeya zeae Ech1591 8118676 YP_003003626.1 CDS Dd1591_1284 NC_012912.1 1456589 1456777 R KEGG: eca:ECA3166 hypothetical protein; hypothetical protein complement(1456589..1456777) Dickeya zeae Ech1591 8118677 YP_003003627.1 CDS Dd1591_1285 NC_012912.1 1457052 1458173 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: yen:YE3022 hypothetical protein; Cupin 4 family protein complement(1457052..1458173) Dickeya zeae Ech1591 8118678 YP_003003628.1 CDS Dd1591_1286 NC_012912.1 1458403 1458732 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: yen:YE3423 transcription regulator ArsR; ArsR family transcriptional regulator complement(1458403..1458732) Dickeya zeae Ech1591 8118679 YP_003003629.1 CDS Dd1591_1287 NC_012912.1 1458944 1459867 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mms:mma_0767 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1458944..1459867) Dickeya zeae Ech1591 8118680 YP_003003630.1 CDS Dd1591_1288 NC_012912.1 1460254 1460766 D KEGG: eca:ECA0249 hypothetical protein; hypothetical protein 1460254..1460766 Dickeya zeae Ech1591 8118681 YP_003003631.1 CDS Dd1591_1289 NC_012912.1 1460824 1462011 D PFAM: aldo/keto reductase; KEGG: eca:ECA0250 putative oxidoreductase; Pyridoxal 4-dehydrogenase 1460824..1462011 Dickeya zeae Ech1591 8118682 YP_003003632.1 CDS Dd1591_1290 NC_012912.1 1462072 1463547 R KEGG: eca:ECA2840 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(1462072..1463547) Dickeya zeae Ech1591 8118683 YP_003003633.1 CDS Dd1591_1291 NC_012912.1 1464279 1465334 D KEGG: bja:bll2387 hypothetical protein; hypothetical protein 1464279..1465334 Dickeya zeae Ech1591 8118684 YP_003003634.1 CDS Dd1591_1292 NC_012912.1 1465396 1465536 D hypothetical protein 1465396..1465536 Dickeya zeae Ech1591 8118685 YP_003003635.1 CDS Dd1591_1293 NC_012912.1 1465992 1468436 D PFAM: MscS Mechanosensitive ion channel; KEGG: eca:ECA3118 putative mechanosensitive ion channel protein; MscS Mechanosensitive ion channel 1465992..1468436 Dickeya zeae Ech1591 8118687 YP_003003636.1 CDS Dd1591_1294 NC_012912.1 1468526 1469386 R PFAM: aminotransferase class IV; KEGG: eca:ECA3117 D-alanine aminotransferase; D-amino-acid transaminase complement(1468526..1469386) Dickeya zeae Ech1591 8118688 YP_003003637.1 CDS Dd1591_1295 NC_012912.1 1469841 1471064 D PFAM: aminotransferase class I and II; KEGG: eca:ECA3115 aminotransferase; aminotransferase 1469841..1471064 Dickeya zeae Ech1591 8118689 YP_003003638.1 CDS Dd1591_1296 NC_012912.1 1471219 1471620 D TIGRFAM: lipoprotein, PulS/OutS family; KEGG: eca:ECA3114 general secretion pathway lipoprotein; lipoprotein, PulS/OutS family 1471219..1471620 Dickeya zeae Ech1591 8118690 YP_003003639.1 CDS Dd1591_1297 NC_012912.1 1471655 1472284 R KEGG: eca:ECA3113 general secretion pathway protein; general secretion pathway protein complement(1471655..1472284) Dickeya zeae Ech1591 8118691 YP_003003640.1 CDS Dd1591_1298 NC_012912.1 1473340 1474158 D TIGRFAM: general secretion pathway protein C; KEGG: eca:ECA3110 general secretion pathway protein C; general secretion pathway protein C 1473340..1474158 Dickeya zeae Ech1591 8118692 YP_003003641.1 CDS Dd1591_1299 NC_012912.1 1474160 1476310 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: kpn:KPN_00160 pullulanase D protein; general secretion pathway protein D 1474160..1476310 Dickeya zeae Ech1591 8118693 YP_003003642.1 CDS Dd1591_1300 NC_012912.1 1476307 1477803 D KEGG: eca:ECA3108 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 1476307..1477803 Dickeya zeae Ech1591 8118694 YP_003003643.1 CDS Dd1591_1301 NC_012912.1 1477805 1479031 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: eca:ECA3107 general secretion pathway protein F; general secretion pathway protein F 1477805..1479031 Dickeya zeae Ech1591 8118695 YP_003003644.1 CDS Dd1591_1302 NC_012912.1 1479065 1479526 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: eca:ECA3106 general secretion pathway protein G; general secretion pathway protein G 1479065..1479526 Dickeya zeae Ech1591 8118696 YP_003003645.1 CDS Dd1591_1303 NC_012912.1 1479529 1480068 D TIGRFAM: general secretion pathway protein H; KEGG: eca:ECA3105 general secretion pathway protein H; general secretion pathway protein H 1479529..1480068 Dickeya zeae Ech1591 8118697 YP_003003646.1 CDS Dd1591_1304 NC_012912.1 1480072 1480449 D TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: eca:ECA3104 general secretion pathway protein I; general secretion pathway protein I 1480072..1480449 Dickeya zeae Ech1591 8118698 YP_003003647.1 CDS Dd1591_1305 NC_012912.1 1480446 1481186 D TIGRFAM: general secretion pathway protein J; KEGG: eca:ECA3103 general secretion pathway protein J; general secretion pathway protein J 1480446..1481186 Dickeya zeae Ech1591 8118699 YP_003003648.1 CDS Dd1591_1306 NC_012912.1 1481183 1482253 D PFAM: General secretion pathway protein K; KEGG: eca:ECA3102 general secretion pathway protein K; general secretion pathway protein K 1481183..1482253 Dickeya zeae Ech1591 8118700 YP_003003649.1 CDS Dd1591_1307 NC_012912.1 1482250 1483452 D TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: eca:ECA3101 general secretion pathway protein L; general secretion pathway protein L 1482250..1483452 Dickeya zeae Ech1591 8118701 YP_003003650.1 CDS Dd1591_1308 NC_012912.1 1483449 1483937 D PFAM: General secretion pathway M protein; KEGG: eca:ECA3100 general secretion pathway protein M; general secretion pathway M protein 1483449..1483937 Dickeya zeae Ech1591 8118702 YP_003003651.1 CDS Dd1591_1309 NC_012912.1 1484122 1484973 D PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: eca:ECA3098 type 4 prepilin-like proteins leader peptide processing enzyme; Prepilin peptidase 1484122..1484973 Dickeya zeae Ech1591 8118703 YP_003003652.1 CDS Dd1591_1310 NC_012912.1 1485426 1485650 D hypothetical protein 1485426..1485650 Dickeya zeae Ech1591 8118704 YP_003003653.1 CDS Dd1591_1311 NC_012912.1 1485893 1486465 D PFAM: protein of unknown function DUF1234; KEGG: eca:ECA3091 hypothetical protein; hypothetical protein 1485893..1486465 Dickeya zeae Ech1591 8118705 YP_003003654.1 CDS Dd1591_1312 NC_012912.1 1486544 1486879 D KEGG: eca:ECA3326 hypothetical protein; hypothetical protein 1486544..1486879 Dickeya zeae Ech1591 8118706 YP_003003655.1 CDS Dd1591_1313 NC_012912.1 1486893 1487951 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: esa:ESA_01712 hypothetical protein; NADH:flavin oxidoreductase/NADH oxidase 1486893..1487951 Dickeya zeae Ech1591 8118387 YP_003003656.1 CDS Dd1591_1314 NC_012912.1 1488359 1488775 R PFAM: thioesterase superfamily protein; KEGG: eca:ECA1857 hypothetical protein; thioesterase superfamily protein complement(1488359..1488775) Dickeya zeae Ech1591 8118388 YP_003003657.1 CDS Dd1591_1315 NC_012912.1 1488815 1489573 R catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase complement(1488815..1489573) Dickeya zeae Ech1591 8118389 YP_003003658.1 CDS Dd1591_1316 NC_012912.1 1489570 1490445 R PFAM: isochorismatase hydrolase; phosphopantetheine-binding; KEGG: spe:Spro_3419 isochorismatase; Isochorismatase complement(1489570..1490445) Dickeya zeae Ech1591 8118390 YP_003003659.1 CDS entE NC_012912.1 1490449 1492077 R bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E complement(1490449..1492077) Dickeya zeae Ech1591 8118391 YP_003003660.1 CDS Dd1591_1318 NC_012912.1 1492074 1493261 R TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: spe:Spro_3421 isochorismate synthase; isochorismate synthase complement(1492074..1493261) Dickeya zeae Ech1591 8118392 YP_003003661.1 CDS Dd1591_1319 NC_012912.1 1493346 1495568 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ent:Ent638_1079 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1493346..1495568) Dickeya zeae Ech1591 8118393 YP_003003662.1 CDS Dd1591_1320 NC_012912.1 1495882 1497174 D PFAM: putative esterase; KEGG: yen:YE3622 enterobactin/ferric enterobactin esterase; enterobactin/ferric enterobactin esterase 1495882..1497174 Dickeya zeae Ech1591 8118394 YP_003003663.1 CDS Dd1591_1321 NC_012912.1 1497209 1497427 D PFAM: MbtH domain protein; KEGG: cvi:CV_2232 MbtH-like protein; MbtH domain-containing protein 1497209..1497427 Dickeya zeae Ech1591 8118395 YP_003003664.1 CDS Dd1591_1322 NC_012912.1 1497482 1506115 D TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: cvi:CV_2233 synthetase CbsF; amino acid adenylation domain-containing protein 1497482..1506115 Dickeya zeae Ech1591 8118396 YP_003003665.1 CDS Dd1591_1323 NC_012912.1 1506200 1506451 D hypothetical protein 1506200..1506451 Dickeya zeae Ech1591 8118397 YP_003003666.1 CDS Dd1591_1324 NC_012912.1 1506538 1507335 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE3621 iron-siderophore transport system, ATP-binding component; ABC transporter complement(1506538..1507335) Dickeya zeae Ech1591 8118398 YP_003003667.1 CDS Dd1591_1325 NC_012912.1 1507373 1508407 R PFAM: transport system permease protein; KEGG: yen:YE3620 iron-enterobactin transporter permease; transport system permease protein complement(1507373..1508407) Dickeya zeae Ech1591 8118399 YP_003003668.1 CDS Dd1591_1326 NC_012912.1 1508420 1509496 R PFAM: transport system permease protein; KEGG: yen:YE3619 iron-enterobactin transporter membrane protein; transport system permease protein complement(1508420..1509496) Dickeya zeae Ech1591 8118400 YP_003003669.1 CDS Dd1591_1327 NC_012912.1 1509709 1510983 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 1509709..1510983 Dickeya zeae Ech1591 8118401 YP_003003670.1 CDS Dd1591_1328 NC_012912.1 1511019 1512065 R with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein complement(1511019..1512065) Dickeya zeae Ech1591 8118402 YP_003003671.1 CDS Dd1591_1329 NC_012912.1 1512111 1512206 D hypothetical protein 1512111..1512206 Dickeya zeae Ech1591 8118403 YP_003003672.1 CDS Dd1591_1330 NC_012912.1 1512479 1514335 D KEGG: eca:ECA0931 putative avirulence protein; putative avirulence protein 1512479..1514335 Dickeya zeae Ech1591 8118404 YP_003003673.1 CDS Dd1591_1331 NC_012912.1 1514467 1516359 D KEGG: eca:ECA0931 putative avirulence protein; putative avirulence protein 1514467..1516359 Dickeya zeae Ech1591 8118405 YP_003003674.1 CDS Dd1591_1332 NC_012912.1 1516519 1517328 R TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (Class B); KEGG: spe:Spro_1456 5'-nucleotidase; 5'-nucleotidase, lipoprotein e(P4) family protein complement(1516519..1517328) Dickeya zeae Ech1591 8118406 YP_003003675.1 CDS Dd1591_1333 NC_012912.1 1518108 1518899 D PFAM: Necrosis inducing; KEGG: eca:ECA3087 hypothetical protein; Necrosis inducing 1518108..1518899 Dickeya zeae Ech1591 8118407 YP_003003676.1 CDS Dd1591_1334 NC_012912.1 1519626 1520399 R KEGG: sfl:SF1773 putative acetyltransferase; putative acetyltransferase complement(1519626..1520399) Dickeya zeae Ech1591 8118408 YP_003003677.1 CDS Dd1591_1336 NC_012912.1 1521448 1522209 D PFAM: VacJ family lipoprotein; KEGG: eca:ECA3083 lipoprotein; VacJ family lipoprotein 1521448..1522209 Dickeya zeae Ech1591 8118411 YP_003003678.1 CDS Dd1591_1337 NC_012912.1 1522611 1524182 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1522611..1524182 Dickeya zeae Ech1591 8118412 YP_003003679.1 CDS Dd1591_1338 NC_012912.1 1524270 1525523 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: eca:ECA3081 long-chain fatty acid outer membrane transporter; long-chain fatty acid outer membrane transporter complement(1524270..1525523) Dickeya zeae Ech1591 8118413 YP_003003680.1 CDS Dd1591_1339 NC_012912.1 1525907 1526203 D PFAM: conserved hypothetical protein; KEGG: eca:ECA3080 hypothetical protein; hypothetical protein 1525907..1526203 Dickeya zeae Ech1591 8118414 YP_003003681.1 CDS fadI NC_012912.1 1526474 1527793 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1526474..1527793 Dickeya zeae Ech1591 8118415 YP_003003682.1 CDS Dd1591_1341 NC_012912.1 1527790 1529988 D TIGRFAM: fatty acid oxidation complex, alpha subunit FadJ; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: eca:ECA3078 multifunctional fatty acid oxidation complex subunit alpha; fatty acid oxidation complex subunit alpha FadJ 1527790..1529988 Dickeya zeae Ech1591 8118416 YP_003003683.1 CDS Dd1591_1342 NC_012912.1 1530893 1531378 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: eca:ECA3072 phosphohistidine phosphatase; phosphohistidine phosphatase, SixA 1530893..1531378 Dickeya zeae Ech1591 8118417 YP_003003684.1 CDS Dd1591_1343 NC_012912.1 1531461 1532006 R PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: eca:ECA3071 hypothetical protein; hypothetical protein complement(1531461..1532006) Dickeya zeae Ech1591 8118418 YP_003003685.1 CDS Dd1591_1344 NC_012912.1 1532238 1533170 D KEGG: yen:YE1280 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; modification methylase, HemK family 1532238..1533170 Dickeya zeae Ech1591 8118419 YP_003003686.1 CDS Dd1591_1345 NC_012912.1 1533243 1534328 D KEGG: eca:ECA3069 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase 1533243..1534328 Dickeya zeae Ech1591 8118420 YP_003003687.1 CDS mepA NC_012912.1 1534417 1535226 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 1534417..1535226 Dickeya zeae Ech1591 8118421 YP_003003688.1 CDS Dd1591_1347 NC_012912.1 1535230 1536030 D PFAM: protein of unknown function DUF81; KEGG: eca:ECA3067 hypothetical protein; hypothetical protein 1535230..1536030 Dickeya zeae Ech1591 8118422 YP_003003689.1 CDS Dd1591_1348 NC_012912.1 1536030 1536593 D PFAM: protein of unknown function DUF462; KEGG: stm:STM2381 putative cytoplasmic protein; hypothetical protein 1536030..1536593 Dickeya zeae Ech1591 8118423 YP_003003690.1 CDS Dd1591_1349 NC_012912.1 1536628 1536906 D PFAM: YfcL protein; KEGG: eca:ECA3065 hypothetical protein; YfcL protein 1536628..1536906 Dickeya zeae Ech1591 8118424 YP_003003691.1 CDS Dd1591_1350 NC_012912.1 1536955 1537866 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eca:ECA3561 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1536955..1537866) Dickeya zeae Ech1591 8118425 YP_003003692.1 CDS Dd1591_1351 NC_012912.1 1538056 1539474 D PFAM: Aldehyde Dehydrogenase; KEGG: eca:ECA3562 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 1538056..1539474 Dickeya zeae Ech1591 8118426 YP_003003693.1 CDS Dd1591_1352 NC_012912.1 1539567 1540244 D PFAM: ThiJ/PfpI domain protein; KEGG: eca:ECA3563 hypothetical protein; ThiJ/PfpI domain-containing protein 1539567..1540244 Dickeya zeae Ech1591 8118427 YP_003003694.1 CDS Dd1591_1353 NC_012912.1 1540270 1540899 D PFAM: Glutathione S-transferase domain; KEGG: eca:ECA1072 glutathione S-transferase; Glutathione S-transferase domain-containing protein 1540270..1540899 Dickeya zeae Ech1591 8118428 YP_003003695.1 CDS Dd1591_1354 NC_012912.1 1540969 1541394 D PFAM: OsmC family protein; KEGG: bav:BAV2446 organic hydroperoxide resistance protein; OsmC family protein 1540969..1541394 Dickeya zeae Ech1591 8118429 YP_003003696.1 CDS Dd1591_1355 NC_012912.1 1541459 1541776 R PFAM: branched-chain amino acid transport; KEGG: cvi:CV_0704 hypothetical protein; branched-chain amino acid transport complement(1541459..1541776) Dickeya zeae Ech1591 8118430 YP_003003697.1 CDS Dd1591_1356 NC_012912.1 1541773 1542513 R PFAM: AzlC family protein; KEGG: bxe:Bxe_B2443 branched-chain amino acid exporter, LIV-E family; AzlC family protein complement(1541773..1542513) Dickeya zeae Ech1591 8118431 YP_003003698.1 CDS Dd1591_1357 NC_012912.1 1542603 1543436 R PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B2442 AraC family transcriptional regulator; AraC family transcriptional regulator complement(1542603..1543436) Dickeya zeae Ech1591 8118432 YP_003003699.1 CDS mnmC NC_012912.1 1543776 1545794 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(1543776..1545794) Dickeya zeae Ech1591 8118433 YP_003003700.1 CDS Dd1591_1359 NC_012912.1 1545953 1547173 D PFAM: Beta-ketoacyl synthase; KEGG: kpn:KPN_02713 3-oxoacyl-(acyl carrier protein) synthase I; beta-ketoacyl synthase 1545953..1547173 Dickeya zeae Ech1591 8118434 YP_003003701.1 CDS flk NC_012912.1 1547631 1548842 R in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator complement(1547631..1548842) Dickeya zeae Ech1591 8118435 YP_003003702.1 CDS Dd1591_1361 NC_012912.1 1549105 1550622 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: cko:CKO_04003 hypothetical protein; hypothetical protein complement(1549105..1550622) Dickeya zeae Ech1591 8118436 YP_003003703.1 CDS Dd1591_1362 NC_012912.1 1550638 1551066 R KEGG: spe:Spro_3343 tricarboxylic transport; tricarboxylic transport complement(1550638..1551066) Dickeya zeae Ech1591 8118437 YP_003003704.1 CDS Dd1591_1363 NC_012912.1 1551081 1552058 R PFAM: conserved hypothetical protein; KEGG: stm:STM2786 tricarboxylic transport; hypothetical protein complement(1551081..1552058) Dickeya zeae Ech1591 8118438 YP_003003705.1 CDS Dd1591_1364 NC_012912.1 1552261 1552935 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: spe:Spro_3340 two component transcriptional regulator; winged helix family two component transcriptional regulator 1552261..1552935 Dickeya zeae Ech1591 8118439 YP_003003706.1 CDS Dd1591_1365 NC_012912.1 1552922 1554313 D PFAM: Two-component sensor kinase domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: spe:Spro_3339 integral membrane sensor signal transduction histidine kinase; histidine kinase 1552922..1554313 Dickeya zeae Ech1591 8118440 YP_003003707.1 CDS Dd1591_1366 NC_012912.1 1554455 1555588 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: esa:ESA_00896 hypothetical protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region 1554455..1555588 Dickeya zeae Ech1591 8118441 YP_003003708.1 CDS Dd1591_1367 NC_012912.1 1555674 1556684 D PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; KEGG: eca:ECA3059 putative semialdehyde dehydrogenase; putative semialdehyde dehydrogenase 1555674..1556684 Dickeya zeae Ech1591 8118442 YP_003003709.1 CDS Dd1591_1368 NC_012912.1 1556684 1557514 D KEGG: eca:ECA3058 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1556684..1557514 Dickeya zeae Ech1591 8118443 YP_003003710.1 CDS Dd1591_1369 NC_012912.1 1557592 1558257 D PFAM: SNARE associated Golgi protein; KEGG: eca:ECA3057 hypothetical protein; hypothetical protein 1557592..1558257 Dickeya zeae Ech1591 8118444 YP_003003711.1 CDS Dd1591_1370 NC_012912.1 1558487 1559398 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1558487..1559398 Dickeya zeae Ech1591 8118445 YP_003003712.1 CDS Dd1591_1371 NC_012912.1 1559478 1560746 D KEGG: eca:ECA3055 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1559478..1560746 Dickeya zeae Ech1591 8118446 YP_003003713.1 CDS Dd1591_1372 NC_012912.1 1560736 1561593 D PFAM: Sporulation domain protein; KEGG: eca:ECA3054 hypothetical protein; Sporulation domain-containing protein 1560736..1561593 Dickeya zeae Ech1591 8118447 YP_003003714.1 CDS Dd1591_1373 NC_012912.1 1561866 1562357 D membrane protein required for colicin V production; colicin V production protein 1561866..1562357 Dickeya zeae Ech1591 8118448 YP_003003715.1 CDS Dd1591_1374 NC_012912.1 1562388 1563905 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1562388..1563905 Dickeya zeae Ech1591 8118449 YP_003003716.1 CDS Dd1591_1375 NC_012912.1 1564048 1564617 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: yen:YE1317 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1564048..1564617 Dickeya zeae Ech1591 8118450 YP_003003717.1 CDS Dd1591_1376 NC_012912.1 1564997 1565776 D KEGG: eca:ECA3050 histidine-binding periplasmic protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; cationic amino acid ABC transporter periplasmic binding protein 1564997..1565776 Dickeya zeae Ech1591 8118451 YP_003003718.1 CDS Dd1591_1377 NC_012912.1 1565844 1566533 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3049 histidine ABC transporter permease protein; polar amino acid ABC transporter permease 1565844..1566533 Dickeya zeae Ech1591 8118452 YP_003003719.1 CDS Dd1591_1378 NC_012912.1 1566526 1567242 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3048 histidine ABC transporter permease protein; polar amino acid ABC transporter permease 1566526..1567242 Dickeya zeae Ech1591 8118453 YP_003003720.1 CDS Dd1591_1379 NC_012912.1 1567268 1568041 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3047 histidine/lysine/arginine/ornithine transporter subunit; histidine/lysine/arginine/ornithine transporter subunit 1567268..1568041 Dickeya zeae Ech1591 8118454 YP_003003721.1 CDS Dd1591_1380 NC_012912.1 1568094 1569002 R PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: eca:ECA3046 hypothetical protein; hypothetical protein complement(1568094..1569002) Dickeya zeae Ech1591 8118455 YP_003003722.1 CDS Dd1591_1381 NC_012912.1 1569270 1569899 R PFAM: Glutathione S-transferase domain; KEGG: esa:ESA_00915 hypothetical protein; Glutathione S-transferase domain-containing protein complement(1569270..1569899) Dickeya zeae Ech1591 8118456 YP_003003723.1 CDS Dd1591_1382 NC_012912.1 1570152 1570703 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: eca:ECA3043 phosphodiesterase; phosphodiesterase 1570152..1570703 Dickeya zeae Ech1591 8118457 YP_003003724.1 CDS Dd1591_1383 NC_012912.1 1570794 1571405 D PFAM: NUDIX hydrolase; KEGG: eca:ECA3042 putative NUDIX hydrolase; NUDIX hydrolase 1570794..1571405 Dickeya zeae Ech1591 8118458 YP_003003725.1 CDS Dd1591_1384 NC_012912.1 1571506 1573647 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(1571506..1573647) Dickeya zeae Ech1591 8118459 YP_003003726.1 CDS Dd1591_1385 NC_012912.1 1573738 1574940 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1573738..1574940) Dickeya zeae Ech1591 8118460 YP_003003727.1 CDS Dd1591_1386 NC_012912.1 1575392 1575847 D PFAM: protein of unknown function DUF412; KEGG: spe:Spro_3315 hypothetical protein; hypothetical protein 1575392..1575847 Dickeya zeae Ech1591 8118461 YP_003003728.1 CDS Dd1591_1387 NC_012912.1 1575984 1576478 D PFAM: YfbU family protein; KEGG: eca:ECA3037 hypothetical protein; hypothetical protein 1575984..1576478 Dickeya zeae Ech1591 8118462 YP_003003729.1 CDS Dd1591_1388 NC_012912.1 1576520 1577176 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: eca:ECA3036 putative phosphatase; putative phosphatase 1576520..1577176 Dickeya zeae Ech1591 8118463 YP_003003730.1 CDS Dd1591_1389 NC_012912.1 1577321 1579156 D PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: eca:ECA3035 putative sodium/sulphate transporter; Citrate transporter 1577321..1579156 Dickeya zeae Ech1591 8118464 YP_003003731.1 CDS Dd1591_1390 NC_012912.1 1579219 1579818 R KEGG: eca:ECA3034 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; hypothetical protein complement(1579219..1579818) Dickeya zeae Ech1591 8118465 YP_003003732.1 CDS Dd1591_1391 NC_012912.1 1579966 1581180 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(1579966..1581180) Dickeya zeae Ech1591 8118466 YP_003003733.1 CDS Dd1591_1392 NC_012912.1 1581939 1582076 D hypothetical protein 1581939..1582076 Dickeya zeae Ech1591 8120434 YP_003003734.1 CDS Dd1591_1393 NC_012912.1 1582518 1583447 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA3032 LysR family transcriptional regulator; LysR family transcriptional regulator 1582518..1583447 Dickeya zeae Ech1591 8120435 YP_003003735.1 CDS Dd1591_1394 NC_012912.1 1584097 1584540 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 1584097..1584540 Dickeya zeae Ech1591 8120436 YP_003003736.1 CDS Dd1591_1395 NC_012912.1 1584559 1585233 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1584559..1585233 Dickeya zeae Ech1591 8120437 YP_003003737.1 CDS Dd1591_1396 NC_012912.1 1585351 1587150 D NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 1585351..1587150 Dickeya zeae Ech1591 8120438 YP_003003738.1 CDS Dd1591_1397 NC_012912.1 1587153 1587683 D TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: spe:Spro_3305 NADH dehydrogenase subunit E; NADH-quinone oxidoreductase subunit E 1587153..1587683 Dickeya zeae Ech1591 8120439 YP_003003739.1 CDS Dd1591_1398 NC_012912.1 1587680 1589029 D shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1587680..1589029 Dickeya zeae Ech1591 8120440 YP_003003740.1 CDS Dd1591_1399 NC_012912.1 1589144 1591870 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1589144..1591870 Dickeya zeae Ech1591 8120441 YP_003003741.1 CDS Dd1591_1400 NC_012912.1 1591867 1592841 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1591867..1592841 Dickeya zeae Ech1591 8120442 YP_003003742.1 CDS Dd1591_1401 NC_012912.1 1592858 1593400 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1592858..1593400 Dickeya zeae Ech1591 8120443 YP_003003743.1 CDS Dd1591_1402 NC_012912.1 1593411 1593962 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: eca:ECA3020 NADH dehydrogenase subunit J; NADH dehydrogenase (quinone) 1593411..1593962 Dickeya zeae Ech1591 8120444 YP_003003744.1 CDS Dd1591_1403 NC_012912.1 1593959 1594261 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1593959..1594261 Dickeya zeae Ech1591 8120445 YP_003003745.1 CDS Dd1591_1404 NC_012912.1 1594258 1596108 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1594258..1596108 Dickeya zeae Ech1591 8120446 YP_003003746.1 CDS Dd1591_1405 NC_012912.1 1596142 1597740 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1596142..1597740 Dickeya zeae Ech1591 8120447 YP_003003747.1 CDS Dd1591_1406 NC_012912.1 1597747 1599204 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1597747..1599204 Dickeya zeae Ech1591 8120448 YP_003003748.1 CDS Dd1591_1407 NC_012912.1 1599614 1601806 D PFAM: multicopper oxidase type 2; KEGG: xfn:XfasM23_2141 multicopper oxidase type 3; multicopper oxidase type 2 1599614..1601806 Dickeya zeae Ech1591 8120449 YP_003003749.1 CDS Dd1591_1408 NC_012912.1 1602198 1603079 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; proline racemase; KEGG: eca:ECA3011 hypothetical protein; phenazine biosynthesis protein PhzF family complement(1602198..1603079) Dickeya zeae Ech1591 8120450 YP_003003750.1 CDS Dd1591_1409 NC_012912.1 1603293 1604885 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3010 ABC transporter ATP-binding protein; ABC transporter 1603293..1604885 Dickeya zeae Ech1591 8120451 YP_003003751.1 CDS Dd1591_1410 NC_012912.1 1605678 1606805 D involved in hydrogen uptake; hydrogenase 2 small subunit 1605678..1606805 Dickeya zeae Ech1591 8120452 YP_003003752.1 CDS Dd1591_1411 NC_012912.1 1606809 1607825 D Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 1606809..1607825 Dickeya zeae Ech1591 8120453 YP_003003753.1 CDS Dd1591_1412 NC_012912.1 1607812 1609011 D HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; putative hydrogenase 2 b cytochrome subunit 1607812..1609011 Dickeya zeae Ech1591 8120454 YP_003003754.1 CDS Dd1591_1413 NC_012912.1 1608989 1610695 D involved in hydrogen uptake; hydrogenase 2 large subunit 1608989..1610695 Dickeya zeae Ech1591 8120455 YP_003003755.1 CDS Dd1591_1414 NC_012912.1 1610695 1611195 D TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: yen:YE3605 hydrogenase 2 maturation endopeptidase; hydrogenase expression/formation protein 1610695..1611195 Dickeya zeae Ech1591 8120456 YP_003003756.1 CDS Dd1591_1415 NC_012912.1 1611263 1611739 D KEGG: yen:YE3604 hydrogenase 2-specific chaperone; hydrogenase 2-specific chaperone 1611263..1611739 Dickeya zeae Ech1591 8120457 YP_003003757.1 CDS Dd1591_1416 NC_012912.1 1611744 1612088 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: yen:YE3603a hydrogenase nickel incorporation protein HybF; hydrogenase nickel insertion protein HypA 1611744..1612088 Dickeya zeae Ech1591 8120458 YP_003003758.1 CDS Dd1591_1417 NC_012912.1 1612159 1613343 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: pmr:PMI0037 hydrogenase nickel incorporation protein; hydrogenase accessory protein HypB 1612159..1613343 Dickeya zeae Ech1591 8120459 YP_003003759.1 CDS Dd1591_1418 NC_012912.1 1613346 1613633 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: yen:YE3602A hydrogenase 2 accessory protein HypG; hydrogenase assembly chaperone HypC/HupF 1613346..1613633 Dickeya zeae Ech1591 8120460 YP_003003760.1 CDS Dd1591_1419 NC_012912.1 1613620 1614735 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: pmr:PMI0039 hydrogenase formation protein; hydrogenase expression/formation protein HypD 1613620..1614735 Dickeya zeae Ech1591 8120461 YP_003003761.1 CDS Dd1591_1420 NC_012912.1 1614735 1615763 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: pmr:PMI0040 hydrogenase formation protein; hydrogenase expression/formation protein HypE 1614735..1615763 Dickeya zeae Ech1591 8120462 YP_003003762.1 CDS Dd1591_1421 NC_012912.1 1616089 1617078 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sea:SeAg_B4544 invertase; transposase IS116/IS110/IS902 family protein 1616089..1617078 Dickeya zeae Ech1591 8120463 YP_003003763.1 CDS Dd1591_1422 NC_012912.1 1617373 1619673 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: yen:YE3600 hydrogenase maturation protein; (NiFe) hydrogenase maturation protein HypF 1617373..1619673 Dickeya zeae Ech1591 8120464 YP_003003764.1 CDS Dd1591_1423 NC_012912.1 1619798 1620274 D KEGG: eca:ECA3006 hypothetical protein; hypothetical protein 1619798..1620274 Dickeya zeae Ech1591 8120465 YP_003003765.1 CDS Dd1591_1424 NC_012912.1 1620400 1621125 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 1620400..1621125 Dickeya zeae Ech1591 8120466 YP_003003766.1 CDS Dd1591_1425 NC_012912.1 1621131 1622549 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: eca:ECA3004 transcription regulator GntR; GntR family transcriptional regulator 1621131..1622549 Dickeya zeae Ech1591 8120467 YP_003003767.1 CDS Dd1591_1426 NC_012912.1 1623075 1623323 R KEGG: eca:ECA3326 hypothetical protein; hypothetical protein complement(1623075..1623323) Dickeya zeae Ech1591 8120468 YP_003003768.1 CDS Dd1591_1427 NC_012912.1 1623390 1626440 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: eca:ECA1408 formate dehydrogenase, nitrate-inducible, major subunit; formate dehydrogenase subunit alpha 1623390..1626440 Dickeya zeae Ech1591 8120469 YP_003003769.1 CDS Dd1591_1428 NC_012912.1 1626456 1627358 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase transmembrane domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spe:Spro_0085 formate dehydrogenase, beta subunit; formate dehydrogenase subunit beta 1626456..1627358 Dickeya zeae Ech1591 8120470 YP_003003770.1 CDS Dd1591_1429 NC_012912.1 1627345 1627980 D cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 1627345..1627980 Dickeya zeae Ech1591 8120471 YP_003003771.1 CDS Dd1591_1430 NC_012912.1 1628323 1629312 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sea:SeAg_B4544 invertase; transposase IS116/IS110/IS902 family protein 1628323..1629312 Dickeya zeae Ech1591 8120472 YP_003003772.1 CDS Dd1591_1431 NC_012912.1 1629582 1630880 R PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2307 major facilitator transporter; major facilitator superfamily protein complement(1629582..1630880) Dickeya zeae Ech1591 8120473 YP_003003773.1 CDS Dd1591_1432 NC_012912.1 1631213 1632148 D required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 1631213..1632148 Dickeya zeae Ech1591 8120474 YP_003003774.1 CDS Dd1591_1433 NC_012912.1 1633171 1634151 D KEGG: elf:LF82_p159 exported protein precursor; exported protein precursor 1633171..1634151 Dickeya zeae Ech1591 8120475 YP_003003775.1 CDS Dd1591_1434 NC_012912.1 1634310 1635692 R TIGRFAM: pectate lyase; KEGG: cja:CJA_0384 pectate lyase, putative, pel10C; pectate lyase complement(1634310..1635692) Dickeya zeae Ech1591 8120476 YP_003003776.1 CDS Dd1591_1435 NC_012912.1 1635832 1637469 R PFAM: glycoside hydrolase family 43; KEGG: eca:ECA3847 putative xylosidase/arabinosidase; glycoside hydrolase family 43 complement(1635832..1637469) Dickeya zeae Ech1591 8120477 YP_003003777.1 CDS Dd1591_1436 NC_012912.1 1637658 1637789 D KEGG: ypy:YPK_0408 hypothetical protein; hypothetical protein 1637658..1637789 Dickeya zeae Ech1591 8120478 YP_003003778.1 CDS Dd1591_1437 NC_012912.1 1637907 1639196 D PFAM: Nitrate and nitrite sensing domain protein; ANTAR domain protein; KEGG: eca:ECA2995 nitrate-and nitrite-responsive positive regulator; ANTAR domain-containing protein 1637907..1639196 Dickeya zeae Ech1591 8120479 YP_003003779.1 CDS Dd1591_1438 NC_012912.1 1639648 1640946 D KEGG: eca:ECA2994 nitrate-binding proteint; nitrate-binding proteint 1639648..1640946 Dickeya zeae Ech1591 8120480 YP_003003780.1 CDS Dd1591_1439 NC_012912.1 1640959 1641891 D TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2993 nitrate transporter permease component; nitrate ABC transporter permease 1640959..1641891 Dickeya zeae Ech1591 8120481 YP_003003781.1 CDS Dd1591_1440 NC_012912.1 1641902 1642696 D KEGG: eca:ECA2992 nitrate transport protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPase subunits C and D 1641902..1642696 Dickeya zeae Ech1591 8120482 YP_003003782.1 CDS Dd1591_1441 NC_012912.1 1642709 1646869 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; nitrite reductase [NAD(P)H], small subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: eca:ECA2991 nitrite reductase [NAD(P)H] large subunit; nitrite reductase (NAD(P)H), large subunit 1642709..1646869 Dickeya zeae Ech1591 8120483 YP_003003783.1 CDS Dd1591_1442 NC_012912.1 1646866 1649514 D PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; molydopterin dinucleotide-binding region; KEGG: eca:ECA2990 nitrate reductase; molybdopterin oxidoreductase 1646866..1649514 Dickeya zeae Ech1591 8120484 YP_003003784.1 CDS Dd1591_1443 NC_012912.1 1649542 1650372 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: eca:ECA2989 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1649542..1650372 Dickeya zeae Ech1591 8120485 YP_003003785.1 CDS Dd1591_1444 NC_012912.1 1650422 1650967 R PFAM: NADPH-dependent FMN reductase; KEGG: dar:Daro_2797 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) complement(1650422..1650967) Dickeya zeae Ech1591 8120486 YP_003003786.1 CDS Dd1591_1445 NC_012912.1 1651139 1651495 R KEGG: pha:PSHAa1464 hypothetical protein; hypothetical protein complement(1651139..1651495) Dickeya zeae Ech1591 8120487 YP_003003787.1 CDS Dd1591_1446 NC_012912.1 1651756 1652025 R hypothetical protein complement(1651756..1652025) Dickeya zeae Ech1591 8120488 YP_003003788.1 CDS Dd1591_1447 NC_012912.1 1652261 1653412 D KEGG: pfo:Pfl01_4299 hypothetical protein; hypothetical protein 1652261..1653412 Dickeya zeae Ech1591 8120489 YP_003003789.1 CDS Dd1591_1448 NC_012912.1 1653472 1654623 D KEGG: pfo:Pfl01_4299 hypothetical protein; hypothetical protein 1653472..1654623 Dickeya zeae Ech1591 8120490 YP_003003790.1 CDS Dd1591_1449 NC_012912.1 1654735 1655511 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ent:Ent638_1970 extracellular solute-binding protein; extracellular solute-binding protein family 3 complement(1654735..1655511) Dickeya zeae Ech1591 8120491 YP_003003791.1 CDS Dd1591_1450 NC_012912.1 1655650 1656825 R catalyzes the transfer of an amino moiety; putative aminotransferase complement(1655650..1656825) Dickeya zeae Ech1591 8120492 YP_003003792.1 CDS Dd1591_1451 NC_012912.1 1657111 1658070 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_1967 LysR family transcriptional regulator; LysR family transcriptional regulator 1657111..1658070 Dickeya zeae Ech1591 8120493 YP_003003793.1 CDS Dd1591_1452 NC_012912.1 1658061 1659077 R PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: aha:AHA_2573 microcin immunity protein; peptidase U61 LD-carboxypeptidase A complement(1658061..1659077) Dickeya zeae Ech1591 8120494 YP_003003794.1 CDS Dd1591_1453 NC_012912.1 1659458 1661056 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ajs:Ajs_2152 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1659458..1661056 Dickeya zeae Ech1591 8120495 YP_003003795.1 CDS Dd1591_1455 NC_012912.1 1661363 1664071 D PFAM: Ankyrin; SMART: Ankyrin; KEGG: vvu:VV2_0907 ankyrin repeateat-containing protein; ankyrin 1661363..1664071 Dickeya zeae Ech1591 8120497 YP_003003796.1 CDS Dd1591_1456 NC_012912.1 1664244 1666007 R KEGG: eca:ECA4379 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1664244..1666007) Dickeya zeae Ech1591 8120498 YP_003003797.1 CDS Dd1591_1457 NC_012912.1 1666351 1667598 R PFAM: glycosyl transferase family 28; KEGG: bam:Bamb_4507 glycosyl transferase family protein; glycosyl transferase family 28 complement(1666351..1667598) Dickeya zeae Ech1591 8120499 YP_003003798.1 CDS Dd1591_1458 NC_012912.1 1668186 1668335 R KEGG: set:SEN0307 IS3 transposase; hypothetical protein complement(1668186..1668335) Dickeya zeae Ech1591 8120500 YP_003003799.1 CDS Dd1591_1459 NC_012912.1 1668603 1669166 D PFAM: regulatory protein TetR; KEGG: sek:SSPA2003 putative TetR-family transcriptional regulator; TetR family transcriptional regulator 1668603..1669166 Dickeya zeae Ech1591 8120501 YP_003003800.1 CDS Dd1591_1460 NC_012912.1 1669640 1670743 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: psb:Psyr_2283 secretion protein HlyD; RND family efflux transporter MFP subunit 1669640..1670743 Dickeya zeae Ech1591 8120502 YP_003003801.1 CDS Dd1591_1462 NC_012912.1 1673930 1675372 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dac:Daci_5856 RND efflux system outer membrane lipoprotein; RND efflux system, outer membrane lipoprotein, NodT family 1673930..1675372 Dickeya zeae Ech1591 8120504 YP_003003802.1 CDS Dd1591_1463 NC_012912.1 1675457 1676608 R KEGG: pfo:Pfl01_4305 hypothetical protein; hypothetical protein complement(1675457..1676608) Dickeya zeae Ech1591 8120505 YP_003003803.1 CDS Dd1591_1464 NC_012912.1 1676724 1677704 R PFAM: aldo/keto reductase; KEGG: gdj:Gdia_1683 aldo/keto reductase; aldo/keto reductase complement(1676724..1677704) Dickeya zeae Ech1591 8120506 YP_003003804.1 CDS Dd1591_1466 NC_012912.1 1679539 1679700 R hypothetical protein complement(1679539..1679700) Dickeya zeae Ech1591 8120508 YP_003003805.1 CDS Dd1591_1467 NC_012912.1 1679797 1685643 R PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: pfl:PFL_3016 helicase; DEAD/DEAH box helicase domain-containing protein complement(1679797..1685643) Dickeya zeae Ech1591 8120509 YP_003003806.1 CDS Dd1591_1468 NC_012912.1 1685663 1687750 R KEGG: pfl:PFL_3015 hypothetical protein; hypothetical protein complement(1685663..1687750) Dickeya zeae Ech1591 8120510 YP_003003807.1 CDS Dd1591_1469 NC_012912.1 1687763 1690324 R KEGG: pfl:PFL_3014 hypothetical protein; hypothetical protein complement(1687763..1690324) Dickeya zeae Ech1591 8120511 YP_003003808.1 CDS Dd1591_1470 NC_012912.1 1690321 1691556 R TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: pfl:PFL_3013 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase complement(1690321..1691556) Dickeya zeae Ech1591 8120512 YP_003003809.1 CDS Dd1591_1471 NC_012912.1 1691841 1692863 D KEGG: tgr:Tgr7_2822 hypothetical protein; hypothetical protein 1691841..1692863 Dickeya zeae Ech1591 8120513 YP_003003810.1 CDS Dd1591_1473 NC_012912.1 1693607 1694551 D PFAM: domain of unknown function DUF1738; KEGG: kpe:KPK_1761 putative antirestriction protein; hypothetical protein 1693607..1694551 Dickeya zeae Ech1591 8117348 YP_003003811.1 CDS Dd1591_1474 NC_012912.1 1694872 1695108 D PFAM: Post-segregation antitoxin CcdA; KEGG: spe:Spro_1554 post-segregation antitoxin CcdA; Post-segregation antitoxin CcdA 1694872..1695108 Dickeya zeae Ech1591 8117349 YP_003003812.1 CDS Dd1591_1475 NC_012912.1 1695111 1695425 D PFAM: CcdB protein; KEGG: spe:Spro_1555 CcdB protein; CcdB protein 1695111..1695425 Dickeya zeae Ech1591 8117350 YP_003003813.1 CDS Dd1591_1476 NC_012912.1 1695443 1696174 R KEGG: kpe:KPK_1772 putative MobC protein; putative MobC protein complement(1695443..1696174) Dickeya zeae Ech1591 8117351 YP_003003814.1 CDS Dd1591_1477 NC_012912.1 1696183 1698012 R KEGG: kpe:KPK_1773 type IV conjugative transfer system coupling protein TraD; type IV conjugative transfer system coupling protein TraD complement(1696183..1698012) Dickeya zeae Ech1591 8117352 YP_003003815.1 CDS Dd1591_1478 NC_012912.1 1698683 1698985 R KEGG: kpe:KPK_1774 putative lipoprotein; putative lipoprotein complement(1698683..1698985) Dickeya zeae Ech1591 8117353 YP_003003816.1 CDS Dd1591_1479 NC_012912.1 1699026 1700042 R TIGRFAM: P-type DNA transfer ATPase VirB11; PFAM: type II secretion system protein E; KEGG: eca:ECA1613 putative conjugal transfer protein; Sigma 54 interacting domain-containing protein complement(1699026..1700042) Dickeya zeae Ech1591 8117354 YP_003003817.1 CDS Dd1591_1480 NC_012912.1 1700032 1701234 R PFAM: conjugation TrbI family protein; KEGG: kpe:KPK_1776 bacterial conjugation TrbI-like protein; conjugation TrbI family protein complement(1700032..1701234) Dickeya zeae Ech1591 8117355 YP_003003818.1 CDS Dd1591_1481 NC_012912.1 1701231 1702121 R TIGRFAM: P-type conjugative transfer protein VirB9; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: eca:ECA1615 putative conjugal transfer protein; P-type conjugative transfer protein VirB9 complement(1701231..1702121) Dickeya zeae Ech1591 8117356 YP_003003819.1 CDS Dd1591_1482 NC_012912.1 1702121 1702804 R PFAM: VirB8 family protein; KEGG: kpe:KPK_1778 type IV secretion system protein VirB8; VirB8 family protein complement(1702121..1702804) Dickeya zeae Ech1591 8117357 YP_003003820.1 CDS Dd1591_1483 NC_012912.1 1702797 1702937 R KEGG: kpe:KPK_1779 putative conjugal transfer protein; putative conjugal transfer protein complement(1702797..1702937) Dickeya zeae Ech1591 8117358 YP_003003821.1 CDS Dd1591_1484 NC_012912.1 1703025 1704053 R PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: eca:ECA1617 putative conjugal transfer protein; TrbL/VirB6 plasmid conjugal transfer protein complement(1703025..1704053) Dickeya zeae Ech1591 8117359 YP_003003822.1 CDS Dd1591_1485 NC_012912.1 1704065 1704289 R KEGG: ecq:ECED1_2265 conserved hypothetical protein; putative exported protein; hypothetical protein complement(1704065..1704289) Dickeya zeae Ech1591 8117360 YP_003003823.1 CDS Dd1591_1486 NC_012912.1 1704300 1705016 R PFAM: type IV secretion system family protein; KEGG: eca:ECA1619 putative conjugal transfer protein; type IV secretion system family protein complement(1704300..1705016) Dickeya zeae Ech1591 8117361 YP_003003824.1 CDS Dd1591_1487 NC_012912.1 1705041 1707788 R PFAM: CagE TrbE VirB component of type IV transporter system; type IV secretory pathway VirB3 family protein; KEGG: eca:ECA1620 putative conjugal transfer protein; CagE TrbE VirB component of type IV transporter system complement(1705041..1707788) Dickeya zeae Ech1591 8117362 YP_003003825.1 CDS Dd1591_1488 NC_012912.1 1707798 1708073 R PFAM: Conjugal transfer protein TrbC; KEGG: eca:ECA1621 putative conjugal transfer protein; conjugal transfer protein TrbC complement(1707798..1708073) Dickeya zeae Ech1591 8117363 YP_003003826.1 CDS Dd1591_1489 NC_012912.1 1708093 1708740 R PFAM: Lytic transglycosylase catalytic; KEGG: eca:ECA1622 putative conjugal transfer protein; Lytic transglycosylase catalytic complement(1708093..1708740) Dickeya zeae Ech1591 8117364 YP_003003827.1 CDS Dd1591_1490 NC_012912.1 1708810 1709043 R KEGG: eca:ECA1623 hypothetical protein; hypothetical protein complement(1708810..1709043) Dickeya zeae Ech1591 8117365 YP_003003828.1 CDS Dd1591_1491 NC_012912.1 1709363 1710400 D KEGG: shl:Shal_2175 hypothetical protein; hypothetical protein 1709363..1710400 Dickeya zeae Ech1591 8117366 YP_003003829.1 CDS Dd1591_1492 NC_012912.1 1710394 1712670 D PFAM: helicase domain protein; SMART: DEAD-like helicase; KEGG: shl:Shal_2176 helicase domain-containing protein; helicase domain-containing protein 1710394..1712670 Dickeya zeae Ech1591 8117367 YP_003003830.1 CDS Dd1591_1493 NC_012912.1 1712751 1713959 D PFAM: transposase mutator type; KEGG: yps:YPTB0777 putative transposase-like protein; transposase mutator type 1712751..1713959 Dickeya zeae Ech1591 8117368 YP_003003831.1 CDS Dd1591_1494 NC_012912.1 1714453 1714662 R TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: eca:ECA1625 putative conjugal transfer protein; TraR/DksA family transcriptional regulator complement(1714453..1714662) Dickeya zeae Ech1591 8117369 YP_003003832.1 CDS Dd1591_1495 NC_012912.1 1714652 1715236 R KEGG: eca:ECA1626 hypothetical protein; hypothetical protein complement(1714652..1715236) Dickeya zeae Ech1591 8117370 YP_003003833.1 CDS Dd1591_1496 NC_012912.1 1715253 1715447 R PFAM: Prophage CP4-57 regulatory; KEGG: eca:ECA1627 putative prophage regulatory protein; phage transcriptional regulator AlpA complement(1715253..1715447) Dickeya zeae Ech1591 8117371 YP_003003834.1 CDS Dd1591_1497 NC_012912.1 1715942 1716199 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ses:SARI_03129 hypothetical protein; XRE family transcriptional regulator complement(1715942..1716199) Dickeya zeae Ech1591 8117372 YP_003003835.1 CDS Dd1591_1498 NC_012912.1 1716313 1716591 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ses:SARI_03130 hypothetical protein; XRE family transcriptional regulator complement(1716313..1716591) Dickeya zeae Ech1591 8117373 YP_003003836.1 CDS Dd1591_1499 NC_012912.1 1716725 1717012 D KEGG: plu:plu0729 hypothetical protein; putative transcriptional regulator Nlp 1716725..1717012 Dickeya zeae Ech1591 8117374 YP_003003837.1 CDS Dd1591_1500 NC_012912.1 1717345 1717590 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcm:Bcenmc03_6923 XRE family transcriptional regulator; XRE family transcriptional regulator complement(1717345..1717590) Dickeya zeae Ech1591 8117375 YP_003003838.1 CDS Dd1591_1501 NC_012912.1 1717937 1718455 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein; Hcp1 family type VI secretion system effector 1717937..1718455 Dickeya zeae Ech1591 8117376 YP_003003839.1 CDS Dd1591_1502 NC_012912.1 1718568 1720421 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA2867 putative rhs accessory genetic element; type VI secretion system Vgr family protein 1718568..1720421 Dickeya zeae Ech1591 8117377 YP_003003840.1 CDS Dd1591_1503 NC_012912.1 1720435 1720842 D PFAM: Domain of unknown function DUF1795; KEGG: eca:ECA2868 hypothetical protein; hypothetical protein 1720435..1720842 Dickeya zeae Ech1591 8117378 YP_003003841.1 CDS Dd1591_1504 NC_012912.1 1720854 1725227 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; PAAR repeat-containing protein; KEGG: eca:ECA4278 rhs-family protein; YD repeat protein 1720854..1725227 Dickeya zeae Ech1591 8117379 YP_003003842.1 CDS Dd1591_1505 NC_012912.1 1725224 1725649 D KEGG: spc:Sputcn32_3208 hypothetical protein; hypothetical protein 1725224..1725649 Dickeya zeae Ech1591 8117380 YP_003003843.1 CDS Dd1591_1507 NC_012912.1 1726467 1726898 D KEGG: btr:Btr_0399 hypothetical protein; hypothetical protein 1726467..1726898 Dickeya zeae Ech1591 8117382 YP_003003844.1 CDS Dd1591_1508 NC_012912.1 1727147 1728073 R KEGG: kpe:KPK_1790 hypothetical protein; hypothetical protein complement(1727147..1728073) Dickeya zeae Ech1591 8117383 YP_003003845.1 CDS Dd1591_1509 NC_012912.1 1729091 1729402 D PFAM: protein of unknown function DUF736; KEGG: pna:Pnap_4161 hypothetical protein; hypothetical protein 1729091..1729402 Dickeya zeae Ech1591 8117384 YP_003003846.1 CDS Dd1591_1511 NC_012912.1 1730176 1730448 R KEGG: pmr:PMI3401 sugar fermentation stimulation protein; putative transcriptional regulator Nlp complement(1730176..1730448) Dickeya zeae Ech1591 8117386 YP_003003847.1 CDS Dd1591_1512 NC_012912.1 1730674 1730910 D KEGG: kpn:KPN_02949 putative transcriptional regulator; putative transcriptional regulator 1730674..1730910 Dickeya zeae Ech1591 8117387 YP_003003848.1 CDS Dd1591_1513 NC_012912.1 1731123 1731410 D SMART: helix-turn-helix domain protein; KEGG: kpn:KPN_02949 putative transcriptional regulator; XRE family transcriptional regulator 1731123..1731410 Dickeya zeae Ech1591 8117388 YP_003003849.1 CDS Dd1591_1514 NC_012912.1 1731524 1732795 R PFAM: integrase family protein; KEGG: kpe:KPK_1799 integrase; integrase family protein complement(1731524..1732795) Dickeya zeae Ech1591 8117389 YP_003003850.1 CDS Dd1591_1515 NC_012912.1 1733417 1733692 D PFAM: regulatory protein LysR; KEGG: eca:ECA2888 nitrogen assimilation regulatory protein (partial); LysR family transcriptional regulator 1733417..1733692 Dickeya zeae Ech1591 8117391 YP_003003851.1 CDS Dd1591_1516 NC_012912.1 1733788 1735197 R PFAM: amino acid permease-associated region; KEGG: eca:ECA2885 D-alanine/D-serine/glycine permease; amino acid permease-like protein complement(1733788..1735197) Dickeya zeae Ech1591 8117392 YP_003003852.1 CDS Dd1591_1517 NC_012912.1 1735871 1736095 R KEGG: eca:ECA2883 hypothetical protein; hypothetical protein complement(1735871..1736095) Dickeya zeae Ech1591 8117394 YP_003003853.1 CDS Dd1591_1518 NC_012912.1 1736746 1737408 D in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1736746..1737408 Dickeya zeae Ech1591 8117395 YP_003003854.1 CDS uvrC NC_012912.1 1737401 1739233 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1737401..1739233 Dickeya zeae Ech1591 8117396 YP_003003855.1 CDS Dd1591_1520 NC_012912.1 1739291 1739839 D KEGG: yen:YE1829 phosphatidylglycerophosphate synthetase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; phosphatidylglycerophosphate synthetase 1739291..1739839 Dickeya zeae Ech1591 8117397 YP_003003856.1 CDS Dd1591_1522 NC_012912.1 1741166 1742854 D KEGG: ent:Ent638_1341 hypothetical protein; hypothetical protein 1741166..1742854 Dickeya zeae Ech1591 8117402 YP_003003857.1 CDS Dd1591_1523 NC_012912.1 1742941 1743207 D KEGG: yps:YPTB1774 putative integrase; putative integrase 1742941..1743207 Dickeya zeae Ech1591 8117403 YP_003003858.1 CDS Dd1591_1524 NC_012912.1 1743308 1743874 D hypothetical protein 1743308..1743874 Dickeya zeae Ech1591 8117404 YP_003003859.1 CDS Dd1591_1525 NC_012912.1 1744185 1744625 R KEGG: eca:ECA2615 putative phage encoded host lysis, regulatory protein; putative phage encoded host lysis, regulatory protein complement(1744185..1744625) Dickeya zeae Ech1591 8117405 YP_003003860.1 CDS Dd1591_1526 NC_012912.1 1744622 1745113 R PFAM: glycoside hydrolase family 24; KEGG: kpn:KPN_04875 putative prophage endolysin, control of lysis; Lysozyme complement(1744622..1745113) Dickeya zeae Ech1591 8117406 YP_003003861.1 CDS Dd1591_1527 NC_012912.1 1745103 1745414 R PFAM: holin family 2; KEGG: eca:ECA2617 phage lysis protein Y, holin; holin family 2 complement(1745103..1745414) Dickeya zeae Ech1591 8117407 YP_003003862.1 CDS Dd1591_1528 NC_012912.1 1746038 1747315 D SMART: Parallel beta-helix repeat; KEGG: sde:Sde_2946 hypothetical protein; Parallel beta-helix repeat protein 1746038..1747315 Dickeya zeae Ech1591 8117408 YP_003003863.1 CDS Dd1591_1529 NC_012912.1 1747386 1748666 R KEGG: pat:Patl_1404 cellulase; PFAM: glycoside hydrolase family 5; Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; Cellulase complement(1747386..1748666) Dickeya zeae Ech1591 8117409 YP_003003864.1 CDS Dd1591_1530 NC_012912.1 1749254 1749631 R PFAM: cytochrome b562; KEGG: eca:ECA2222 putative soluble cytochrome b562; cytochrome b562 complement(1749254..1749631) Dickeya zeae Ech1591 8117410 YP_003003865.1 CDS Dd1591_1531 NC_012912.1 1749899 1751335 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: eca:ECA2762 hypothetical protein; hypothetical protein complement(1749899..1751335) Dickeya zeae Ech1591 8117411 YP_003003866.1 CDS Dd1591_1532 NC_012912.1 1751452 1751589 D hypothetical protein 1751452..1751589 Dickeya zeae Ech1591 8117412 YP_003003867.1 CDS Dd1591_1534 NC_012912.1 1751970 1752170 D KEGG: eca:ECA1682 hypothetical protein; hypothetical protein 1751970..1752170 Dickeya zeae Ech1591 8117414 YP_003003868.1 CDS Dd1591_1535 NC_012912.1 1752208 1753932 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA1683 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1752208..1753932) Dickeya zeae Ech1591 8117415 YP_003003869.1 CDS Dd1591_1536 NC_012912.1 1754855 1755205 D with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1754855..1755205 Dickeya zeae Ech1591 8117416 YP_003003870.1 CDS Dd1591_1537 NC_012912.1 1755205 1755786 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1755205..1755786 Dickeya zeae Ech1591 8117417 YP_003003871.1 CDS Dd1591_1538 NC_012912.1 1755920 1756807 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1755920..1756807 Dickeya zeae Ech1591 8117418 YP_003003872.1 CDS motB NC_012912.1 1756804 1757934 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1756804..1757934 Dickeya zeae Ech1591 8117419 YP_003003873.1 CDS Dd1591_1540 NC_012912.1 1757952 1759970 D chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 1757952..1759970 Dickeya zeae Ech1591 8117420 YP_003003874.1 CDS Dd1591_1541 NC_012912.1 1760006 1760503 D PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: eca:ECA1690 purine-binding chemotaxis protein; purine-binding chemotaxis protein 1760006..1760503 Dickeya zeae Ech1591 8117421 YP_003003875.1 CDS Dd1591_1542 NC_012912.1 1760622 1762322 D PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; ligand binding Tar domain protein; KEGG: eca:ECA1691 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1760622..1762322 Dickeya zeae Ech1591 8117422 YP_003003876.1 CDS Dd1591_1543 NC_012912.1 1763027 1763899 D methylates the MCP; chemotaxis methyltransferase CheR 1763027..1763899 Dickeya zeae Ech1591 8117423 YP_003003877.1 CDS Dd1591_1544 NC_012912.1 1763899 1764951 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1763899..1764951 Dickeya zeae Ech1591 8117424 YP_003003878.1 CDS Dd1591_1545 NC_012912.1 1764987 1765376 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: eca:ECA1694 chemotaxis regulatory protein CheY; response regulator receiver protein 1764987..1765376 Dickeya zeae Ech1591 8117425 YP_003003879.1 CDS Dd1591_1546 NC_012912.1 1765386 1766030 D cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1765386..1766030 Dickeya zeae Ech1591 8117426 YP_003003880.1 CDS flhB NC_012912.1 1766261 1767412 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1766261..1767412 Dickeya zeae Ech1591 8118067 YP_003003881.1 CDS flhA NC_012912.1 1767405 1769501 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1767405..1769501 Dickeya zeae Ech1591 8118068 YP_003003882.1 CDS Dd1591_1549 NC_012912.1 1769498 1769920 D PFAM: flagellar FlhE family protein; KEGG: eta:ETA_14740 flagellar protein FlhE; flagellar FlhE family protein 1769498..1769920 Dickeya zeae Ech1591 8118069 YP_003003883.1 CDS Dd1591_1550 NC_012912.1 1769983 1770420 R PFAM: FlgN family protein; KEGG: eca:ECA1699 flagella synthesis protein; FlgN family protein complement(1769983..1770420) Dickeya zeae Ech1591 8118070 YP_003003884.1 CDS Dd1591_1551 NC_012912.1 1770425 1770724 R regulates the flagellar specific sigma28 transcription factor; anti-sigma28 factor FlgM complement(1770425..1770724) Dickeya zeae Ech1591 8118071 YP_003003885.1 CDS flgA NC_012912.1 1770870 1771538 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1770870..1771538) Dickeya zeae Ech1591 8118072 YP_003003886.1 CDS Dd1591_1553 NC_012912.1 1771705 1772124 D TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: eca:ECA1702 flagellar basal body rod protein FlgB; flagellar basal-body rod protein FlgB 1771705..1772124 Dickeya zeae Ech1591 8118073 YP_003003887.1 CDS flgC NC_012912.1 1772158 1772562 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1772158..1772562 Dickeya zeae Ech1591 8118074 YP_003003888.1 CDS flgD NC_012912.1 1772575 1773246 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1772575..1773246 Dickeya zeae Ech1591 8118075 YP_003003889.1 CDS flgE NC_012912.1 1773313 1774530 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1773313..1774530 Dickeya zeae Ech1591 8118076 YP_003003890.1 CDS Dd1591_1557 NC_012912.1 1774552 1775307 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: eca:ECA1706 flagellar basal body rod protein FlgF; flagellar basal body rod protein 1774552..1775307 Dickeya zeae Ech1591 8118077 YP_003003891.1 CDS Dd1591_1558 NC_012912.1 1775334 1776116 D TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: eca:ECA1707 flagellar basal body rod protein FlgG; flagellar basal-body rod protein FlgG 1775334..1776116 Dickeya zeae Ech1591 8118078 YP_003003892.1 CDS flgH NC_012912.1 1776247 1776966 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1776247..1776966 Dickeya zeae Ech1591 8118079 YP_003003893.1 CDS flgI NC_012912.1 1776983 1778092 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1776983..1778092 Dickeya zeae Ech1591 8118080 YP_003003894.1 CDS flgJ NC_012912.1 1778092 1779045 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1778092..1779045 Dickeya zeae Ech1591 8118081 YP_003003895.1 CDS Dd1591_1562 NC_012912.1 1779172 1781094 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: eca:ECA1711 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 1779172..1781094 Dickeya zeae Ech1591 8118082 YP_003003896.1 CDS Dd1591_1563 NC_012912.1 1781127 1782056 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: eca:ECA1712 flagellar hook-associated protein FlgL; flagellar hook-associated protein 3 1781127..1782056 Dickeya zeae Ech1591 8118083 YP_003003897.1 CDS Dd1591_1564 NC_012912.1 1782188 1782970 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: eca:ECA1714 flagellar biosynthesis protein FliR; flagellar biosynthetic protein FliR complement(1782188..1782970) Dickeya zeae Ech1591 8118084 YP_003003898.1 CDS fliQ NC_012912.1 1782973 1783242 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(1782973..1783242) Dickeya zeae Ech1591 8118085 YP_003003899.1 CDS Dd1591_1566 NC_012912.1 1783283 1784059 R TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: eca:ECA1716 flagellar biosynthesis protein FliP; flagellar biosynthetic protein FliP complement(1783283..1784059) Dickeya zeae Ech1591 8118086 YP_003003900.1 CDS Dd1591_1567 NC_012912.1 1784056 1784472 R PFAM: flagellar biosynthesis protein FliO; KEGG: eca:ECA1717 flagellar protein; flagellar biosynthesis protein FliO complement(1784056..1784472) Dickeya zeae Ech1591 8118087 YP_003003901.1 CDS Dd1591_1568 NC_012912.1 1784472 1784888 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: eca:ECA1718 flagellar motor switch protein FliN; flagellar motor switch protein FliN complement(1784472..1784888) Dickeya zeae Ech1591 8118088 YP_003003902.1 CDS fliM NC_012912.1 1784881 1785897 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(1784881..1785897) Dickeya zeae Ech1591 8118089 YP_003003903.1 CDS fliL NC_012912.1 1785903 1786391 R interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(1785903..1786391) Dickeya zeae Ech1591 8118090 YP_003003904.1 CDS Dd1591_1571 NC_012912.1 1786525 1787856 R PFAM: flagellar hook-length control protein; KEGG: eca:ECA1721 flagellar hook-length control protein; flagellar hook-length control protein complement(1786525..1787856) Dickeya zeae Ech1591 8118091 YP_003003905.1 CDS fliJ NC_012912.1 1787859 1788299 R rod/hook and filament chaperone; flagellar biosynthesis chaperone complement(1787859..1788299) Dickeya zeae Ech1591 8118092 YP_003003906.1 CDS fliI NC_012912.1 1788308 1789678 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(1788308..1789678) Dickeya zeae Ech1591 8118093 YP_003003907.1 CDS fliH NC_012912.1 1789678 1790433 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(1789678..1790433) Dickeya zeae Ech1591 8118094 YP_003003908.1 CDS fliG NC_012912.1 1790417 1791409 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(1790417..1791409) Dickeya zeae Ech1591 8118095 YP_003003909.1 CDS fliF NC_012912.1 1791406 1793112 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(1791406..1793112) Dickeya zeae Ech1591 8118096 YP_003003910.1 CDS Dd1591_1577 NC_012912.1 1793444 1793758 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: eca:ECA1727 flagellar hook-basal body protein FliE; flagellar hook-basal body complex subunit FliE 1793444..1793758 Dickeya zeae Ech1591 8118097 YP_003003911.1 CDS Dd1591_1578 NC_012912.1 1793937 1794299 R PFAM: flagellar export chaperone; KEGG: eca:ECA1728 flagellar biosynthesis protein FliT; flagellar export chaperone complement(1793937..1794299) Dickeya zeae Ech1591 8118098 YP_003003912.1 CDS Dd1591_1579 NC_012912.1 1794299 1794709 R TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: eca:ECA1729 flagellar protein FliS; flagellar protein FliS complement(1794299..1794709) Dickeya zeae Ech1591 8118099 YP_003003913.1 CDS Dd1591_1580 NC_012912.1 1794802 1796223 R PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated protein 2 domain protein; KEGG: yps:YPTB1713 flagellar capping protein; flagellar hook-associated 2 domain-containing protein complement(1794802..1796223) Dickeya zeae Ech1591 8118100 YP_003003914.1 CDS Dd1591_1581 NC_012912.1 1796564 1797391 D PFAM: flagellin domain protein; KEGG: esa:ESA_01288 hypothetical protein; flagellin domain-containing protein 1796564..1797391 Dickeya zeae Ech1591 8118101 YP_003003915.1 CDS Dd1591_1582 NC_012912.1 1797617 1801051 D PFAM: Methyltransferase type 12; KEGG: eca:ECA1732 hypothetical protein; type 12 methyltransferase 1797617..1801051 Dickeya zeae Ech1591 8118102 YP_003003916.1 CDS Dd1591_1583 NC_012912.1 1801200 1802324 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cko:CKO_01022 hypothetical protein; DegT/DnrJ/EryC1/StrS aminotransferase 1801200..1802324 Dickeya zeae Ech1591 8118103 YP_003003917.1 CDS Dd1591_1584 NC_012912.1 1802414 1803595 D KEGG: rec:RHECIAT_CH0001589 putative carbamoyl-phosphate-synthetase protein; putative carbamoyl-phosphate-synthetase protein 1802414..1803595 Dickeya zeae Ech1591 8118104 YP_003003918.1 CDS Dd1591_1585 NC_012912.1 1803592 1804719 D PFAM: oxidoreductase domain protein; KEGG: ret:RHE_CH01518 putative oxidoreductase protein; oxidoreductase domain-containing protein 1803592..1804719 Dickeya zeae Ech1591 8118105 YP_003003919.1 CDS Dd1591_1586 NC_012912.1 1804788 1806221 D KEGG: ent:Ent638_2521 hypothetical protein; hypothetical protein 1804788..1806221 Dickeya zeae Ech1591 8118106 YP_003003920.1 CDS Dd1591_1587 NC_012912.1 1806439 1807302 R hypothetical protein complement(1806439..1807302) Dickeya zeae Ech1591 8118107 YP_003003921.1 CDS Dd1591_1588 NC_012912.1 1807424 1808461 R KEGG: plu:plu4438 IS630 family transposase; IS630 family transposase complement(1807424..1808461) Dickeya zeae Ech1591 8118108 YP_003003922.1 CDS Dd1591_1589 NC_012912.1 1808928 1809758 R KEGG: bcj:pBCA012 hypothetical protein; hypothetical protein complement(1808928..1809758) Dickeya zeae Ech1591 8118109 YP_003003923.1 CDS fliA NC_012912.1 1810429 1811151 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1810429..1811151 Dickeya zeae Ech1591 8118110 YP_003003924.1 CDS Dd1591_1591 NC_012912.1 1811205 1811717 D expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ 1811205..1811717 Dickeya zeae Ech1591 8118111 YP_003003925.1 CDS Dd1591_1592 NC_012912.1 1812131 1812475 D hypothetical protein 1812131..1812475 Dickeya zeae Ech1591 8118112 YP_003003926.1 CDS Dd1591_1593 NC_012912.1 1812454 1813242 D PFAM: PhoH family protein; KEGG: eca:ECA1741 hypothetical protein; hypothetical protein 1812454..1813242 Dickeya zeae Ech1591 8118113 YP_003003927.1 CDS Dd1591_1594 NC_012912.1 1813303 1814907 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: eca:ECA3245 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1813303..1814907) Dickeya zeae Ech1591 8118114 YP_003003928.1 CDS Dd1591_1595 NC_012912.1 1815719 1817044 D PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_05087 hypothetical protein; transposase IS4 family protein 1815719..1817044 Dickeya zeae Ech1591 8118115 YP_003003929.1 CDS Dd1591_1596 NC_012912.1 1817362 1818000 R PFAM: Ribose/galactose isomerase; KEGG: eca:ECA1742 hypothetical protein; hypothetical protein complement(1817362..1818000) Dickeya zeae Ech1591 8118117 YP_003003930.1 CDS Dd1591_1597 NC_012912.1 1818379 1818897 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase complement(1818379..1818897) Dickeya zeae Ech1591 8118118 YP_003003931.1 CDS Dd1591_1598 NC_012912.1 1818988 1820718 R KEGG: eca:ECA1749 hypothetical protein; hypothetical protein complement(1818988..1820718) Dickeya zeae Ech1591 8118119 YP_003003932.1 CDS Dd1591_1599 NC_012912.1 1820928 1821401 D PFAM: protein of unknown function DUF1047; KEGG: eca:ECA1750 hypothetical protein; hypothetical protein 1820928..1821401 Dickeya zeae Ech1591 8118120 YP_003003933.1 CDS Dd1591_1600 NC_012912.1 1821663 1821848 R KEGG: eca:ECA1771 hypothetical protein; hypothetical protein complement(1821663..1821848) Dickeya zeae Ech1591 8118121 YP_003003934.1 CDS Dd1591_1601 NC_012912.1 1822455 1822730 D KEGG: eca:ECA1773 hypothetical protein; hypothetical protein 1822455..1822730 Dickeya zeae Ech1591 8118122 YP_003003935.1 CDS Dd1591_1602 NC_012912.1 1824005 1825669 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA1774 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1824005..1825669 Dickeya zeae Ech1591 8118123 YP_003003936.1 CDS Dd1591_1603 NC_012912.1 1825801 1827288 R KEGG: eca:ECA1775 putative iron-regulated membrane protein; putative iron-regulated membrane protein complement(1825801..1827288) Dickeya zeae Ech1591 8118124 YP_003003937.1 CDS mdoG NC_012912.1 1828259 1829827 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1828259..1829827 Dickeya zeae Ech1591 8118125 YP_003003938.1 CDS Dd1591_1605 NC_012912.1 1829820 1832369 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1829820..1832369 Dickeya zeae Ech1591 8118126 YP_003003939.1 CDS Dd1591_1606 NC_012912.1 1832628 1833548 R TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: eca:ECA1779 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase complement(1832628..1833548) Dickeya zeae Ech1591 8118127 YP_003003940.1 CDS Dd1591_1608 NC_012912.1 1834173 1835234 D PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: spe:Spro_1886 hypothetical protein; Rhodanese domain-containing protein 1834173..1835234 Dickeya zeae Ech1591 8118129 YP_003003941.1 CDS Dd1591_1609 NC_012912.1 1835276 1835854 R PFAM: YceI family protein; KEGG: sfx:S1140 hypothetical protein; YceI family protein complement(1835276..1835854) Dickeya zeae Ech1591 8118130 YP_003003942.1 CDS Dd1591_1610 NC_012912.1 1835884 1836438 R PFAM: cytochrome B561; KEGG: eca:ECA1783 hypothetical protein; cytochrome B561 complement(1835884..1836438) Dickeya zeae Ech1591 8118131 YP_003003943.1 CDS bssS NC_012912.1 1836789 1837043 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS complement(1836789..1837043) Dickeya zeae Ech1591 8118132 YP_003003944.1 CDS Dd1591_1612 NC_012912.1 1837360 1837602 R PFAM: DinI family protein; KEGG: eca:ECA1786 DNA damage-inducible protein I; DinI family protein complement(1837360..1837602) Dickeya zeae Ech1591 8118133 YP_003003945.1 CDS Dd1591_1613 NC_012912.1 1837705 1838748 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1837705..1838748) Dickeya zeae Ech1591 8118134 YP_003003946.1 CDS Dd1591_1614 NC_012912.1 1838927 1839214 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: eca:ECA1788 hypothetical protein; antibiotic biosynthesis monooxygenase 1838927..1839214 Dickeya zeae Ech1591 8118135 YP_003003947.1 CDS Dd1591_1615 NC_012912.1 1839286 1842462 R KEGG: eca:ECA1789 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; ribonuclease, Rne/Rng family complement(1839286..1842462) Dickeya zeae Ech1591 8118136 YP_003003948.1 CDS Dd1591_1616 NC_012912.1 1843042 1844004 D KEGG: eca:ECA1790 23S rRNA pseudouridylate synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; pseudouridine synthase, RluA family 1843042..1844004 Dickeya zeae Ech1591 8118137 YP_003003949.1 CDS Dd1591_1617 NC_012912.1 1844101 1844703 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: eca:ECA1791 Maf-like protein; maf protein complement(1844101..1844703) Dickeya zeae Ech1591 8118138 YP_003003950.1 CDS Dd1591_1618 NC_012912.1 1844846 1845367 D PFAM: protein of unknown function DUF177; KEGG: eca:ECA1792 hypothetical protein; hypothetical protein 1844846..1845367 Dickeya zeae Ech1591 8118139 YP_003003951.1 CDS rpmF NC_012912.1 1845384 1845554 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1845384..1845554 Dickeya zeae Ech1591 8118140 YP_003003952.1 CDS Dd1591_1620 NC_012912.1 1845581 1846627 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1845581..1846627 Dickeya zeae Ech1591 8118141 YP_003003953.1 CDS Dd1591_1621 NC_012912.1 1846634 1847584 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1846634..1847584 Dickeya zeae Ech1591 8118142 YP_003003954.1 CDS Dd1591_1622 NC_012912.1 1847604 1848533 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: eca:ECA1796 acyl carrier protein S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 1847604..1848533 Dickeya zeae Ech1591 8118143 YP_003003955.1 CDS Dd1591_1623 NC_012912.1 1848547 1849281 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: eca:ECA1797 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 1848547..1849281 Dickeya zeae Ech1591 8118144 YP_003003956.1 CDS acpP NC_012912.1 1849436 1849672 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1849436..1849672 Dickeya zeae Ech1591 8118145 YP_003003957.1 CDS Dd1591_1625 NC_012912.1 1849755 1850993 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1849755..1850993 Dickeya zeae Ech1591 8118146 YP_003003958.1 CDS Dd1591_1626 NC_012912.1 1851115 1851918 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1851115..1851918 Dickeya zeae Ech1591 8117827 YP_003003959.1 CDS Dd1591_1627 NC_012912.1 1851925 1852956 D PFAM: aminodeoxychorismate lyase; KEGG: eca:ECA1801 aminodeoxychorismate lyase; aminodeoxychorismate lyase 1851925..1852956 Dickeya zeae Ech1591 8117828 YP_003003960.1 CDS Dd1591_1628 NC_012912.1 1852949 1853596 D KEGG: ypi:YpsIP31758_1583 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 1852949..1853596 Dickeya zeae Ech1591 8117829 YP_003003961.1 CDS Dd1591_1629 NC_012912.1 1853604 1854614 D KEGG: eca:ECA1803 DNA polymerase III subunit delta'; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: DNA polymerase III delta subunit; DNA polymerase III subunit delta' 1853604..1854614 Dickeya zeae Ech1591 8117830 YP_003003962.1 CDS Dd1591_1630 NC_012912.1 1854633 1855427 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: eca:ECA1804 putative metallodependent hydrolase; putative metallodependent hydrolase 1854633..1855427 Dickeya zeae Ech1591 8117831 YP_003003963.1 CDS Dd1591_1631 NC_012912.1 1855745 1857178 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 1855745..1857178 Dickeya zeae Ech1591 8117832 YP_003003964.1 CDS Dd1591_1632 NC_012912.1 1857480 1858541 D PFAM: Malate/L-lactate dehydrogenase; KEGG: lhk:LHK_00733 malate/L-lactate dehydrogenase; Malate/L-lactate dehydrogenase 1857480..1858541 Dickeya zeae Ech1591 8117833 YP_003003965.1 CDS Dd1591_1633 NC_012912.1 1858656 1859006 D PFAM: histidine triad (HIT) protein; KEGG: eca:ECA1809 purine nucleoside phosphoramidase; purine nucleoside phosphoramidase 1858656..1859006 Dickeya zeae Ech1591 8117834 YP_003003966.1 CDS Dd1591_1634 NC_012912.1 1859014 1859397 D PFAM: protein of unknown function DUF1425; KEGG: eca:ECA1810 putative lipoprotein; hypothetical protein 1859014..1859397 Dickeya zeae Ech1591 8117835 YP_003003967.1 CDS Dd1591_1635 NC_012912.1 1859419 1860012 D TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: eca:ECA1811 putative lipoprotein; membrane lipoprotein lipid attachment site 1859419..1860012 Dickeya zeae Ech1591 8117836 YP_003003968.1 CDS Dd1591_1636 NC_012912.1 1859990 1860862 D PFAM: aminoglycoside phosphotransferase; KEGG: eca:ECA1812 hypothetical protein; Thiamine kinase 1859990..1860862 Dickeya zeae Ech1591 8117837 YP_003003969.1 CDS Dd1591_1637 NC_012912.1 1860884 1861981 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1860884..1861981 Dickeya zeae Ech1591 8117838 YP_003003970.1 CDS Dd1591_1638 NC_012912.1 1862017 1862559 D PFAM: protein of unknown function UPF0227; KEGG: esa:ESA_02236 hypothetical protein; hypothetical protein 1862017..1862559 Dickeya zeae Ech1591 8117839 YP_003003971.1 CDS Dd1591_1639 NC_012912.1 1862853 1864160 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eca:ECA1815 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1862853..1864160 Dickeya zeae Ech1591 8117840 YP_003003972.1 CDS Dd1591_1640 NC_012912.1 1864526 1865065 D PFAM: 17 kDa surface antigen; KEGG: eca:ECA1816 hypothetical protein; hypothetical protein 1864526..1865065 Dickeya zeae Ech1591 8117841 YP_003003973.1 CDS Dd1591_1641 NC_012912.1 1865140 1866213 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: eca:ECA1966 putative transcriptional repressor; LacI family transcriptional regulator complement(1865140..1866213) Dickeya zeae Ech1591 8117842 YP_003003974.1 CDS Dd1591_1642 NC_012912.1 1866514 1867812 D PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1967 putative hexuronate transporter; major facilitator superfamily protein 1866514..1867812 Dickeya zeae Ech1591 8117843 YP_003003975.1 CDS Dd1591_1643 NC_012912.1 1867841 1870216 D PFAM: glycoside hydrolase family 31; KEGG: eca:ECA1968 putative glycosyl hydrolase; Glucan 1,3-alpha-glucosidase 1867841..1870216 Dickeya zeae Ech1591 8117844 YP_003003976.1 CDS Dd1591_1644 NC_012912.1 1870537 1871352 D PFAM: N-acetyltransferase; KEGG: spe:Spro_1338 N-acetyltransferase; N-acetyltransferase 1870537..1871352 Dickeya zeae Ech1591 8117845 YP_003003977.1 CDS Dd1591_1645 NC_012912.1 1871407 1872756 R KEGG: eca:ECA1820 putative chaperone; putative chaperone complement(1871407..1872756) Dickeya zeae Ech1591 8117846 YP_003003978.1 CDS Dd1591_1646 NC_012912.1 1872899 1874404 R PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: yen:YE1560 hypothetical protein; diguanylate phosphodiesterase complement(1872899..1874404) Dickeya zeae Ech1591 8117847 YP_003003979.1 CDS Dd1591_1647 NC_012912.1 1874881 1878333 R KEGG: eca:ECA1821 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; helicase domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor complement(1874881..1878333) Dickeya zeae Ech1591 8117848 YP_003003980.1 CDS Dd1591_1648 NC_012912.1 1878462 1879667 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1878462..1879667 Dickeya zeae Ech1591 8117849 YP_003003981.1 CDS lolD NC_012912.1 1879660 1880367 D outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1879660..1880367 Dickeya zeae Ech1591 8117850 YP_003003982.1 CDS Dd1591_1650 NC_012912.1 1880364 1881611 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1880364..1881611 Dickeya zeae Ech1591 8117851 YP_003003983.1 CDS Dd1591_1651 NC_012912.1 1881679 1882611 D PFAM: ROK family protein; KEGG: yps:YPTB2439 N-acetyl-D-glucosamine kinase; ROK family protein 1881679..1882611 Dickeya zeae Ech1591 8117852 YP_003003984.1 CDS Dd1591_1652 NC_012912.1 1882705 1883535 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1882705..1883535 Dickeya zeae Ech1591 8117853 YP_003003985.1 CDS Dd1591_1653 NC_012912.1 1883527 1883781 R KEGG: eca:ECA1828 hypothetical protein; hypothetical protein complement(1883527..1883781) Dickeya zeae Ech1591 8117854 YP_003003986.1 CDS Dd1591_1654 NC_012912.1 1884036 1885037 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1884036..1885037 Dickeya zeae Ech1591 8117855 YP_003003987.1 CDS Dd1591_1655 NC_012912.1 1885178 1885729 D PFAM: glutathione peroxidase; KEGG: yen:YE2194 putative glutathione peroxidase; Peroxiredoxin 1885178..1885729 Dickeya zeae Ech1591 8117856 YP_003003988.1 CDS Dd1591_1656 NC_012912.1 1885792 1886502 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1834 vitamin B12-transporter ATPase; ABC transporter 1885792..1886502 Dickeya zeae Ech1591 8117857 YP_003003989.1 CDS Dd1591_1657 NC_012912.1 1886703 1887167 D PFAM: NLP/P60 protein; KEGG: spe:Spro_2161 NLP/P60 protein; NLP/P60 protein 1886703..1887167 Dickeya zeae Ech1591 8117858 YP_003003990.1 CDS Dd1591_1658 NC_012912.1 1887609 1888340 D PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: eca:ECA1841 hypothetical protein; diguanylate phosphodiesterase 1887609..1888340 Dickeya zeae Ech1591 8117859 YP_003003991.1 CDS Dd1591_1659 NC_012912.1 1888592 1890043 D PFAM: protein of unknown function UPF0061; KEGG: eca:ECA1842 hypothetical protein; hypothetical protein 1888592..1890043 Dickeya zeae Ech1591 8117860 YP_003003992.1 CDS Dd1591_1660 NC_012912.1 1890391 1892082 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: eca:ECA2546 hypothetical protein; hypothetical protein 1890391..1892082 Dickeya zeae Ech1591 8117861 YP_003003993.1 CDS Dd1591_1661 NC_012912.1 1892280 1892828 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eca:ECA2545 hypothetical protein; hypothetical protein 1892280..1892828 Dickeya zeae Ech1591 8117862 YP_003003994.1 CDS Dd1591_1662 NC_012912.1 1892898 1893536 D PFAM: beta-lactamase domain protein; KEGG: eca:ECA2544 putative metallo-beta-lactamase; beta-lactamase domain-containing protein 1892898..1893536 Dickeya zeae Ech1591 8117863 YP_003003995.1 CDS Dd1591_1663 NC_012912.1 1893845 1896082 D PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aha:AHA_1290 radical SAM domain-containing protein; Radical SAM domain-containing protein 1893845..1896082 Dickeya zeae Ech1591 8117864 YP_003003996.1 CDS Dd1591_1664 NC_012912.1 1896276 1897466 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1896276..1897466) Dickeya zeae Ech1591 8117865 YP_003003997.1 CDS Dd1591_1665 NC_012912.1 1897728 1898858 R PFAM: porin Gram-negative type; KEGG: eca:ECA2542 outer membrane protein; porin complement(1897728..1898858) Dickeya zeae Ech1591 8117866 YP_003003998.1 CDS Dd1591_1666 NC_012912.1 1899392 1900531 R PFAM: porin Gram-negative type; KEGG: eca:ECA2542 outer membrane protein; porin complement(1899392..1900531) Dickeya zeae Ech1591 8117867 YP_003003999.1 CDS asnC NC_012912.1 1900830 1902230 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1900830..1902230) Dickeya zeae Ech1591 8117868 YP_003004000.1 CDS Dd1591_1668 NC_012912.1 1902409 1903614 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1902409..1903614) Dickeya zeae Ech1591 8117869 YP_003004001.1 CDS pepN NC_012912.1 1904227 1906842 D TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: eca:ECA2539 aminopeptidase N; aminopeptidase N 1904227..1906842 Dickeya zeae Ech1591 8117870 YP_003004002.1 CDS Dd1591_1670 NC_012912.1 1907063 1909912 D KEGG: lhk:LHK_01781 ATPases with chaperone activity, ATP-binding subunit; hypothetical protein 1907063..1909912 Dickeya zeae Ech1591 8117871 YP_003004003.1 CDS Dd1591_1671 NC_012912.1 1909922 1912375 D KEGG: lhk:LHK_01780 hypothetical protein; hypothetical protein 1909922..1912375 Dickeya zeae Ech1591 8117872 YP_003004004.1 CDS ssuB NC_012912.1 1912429 1913232 R part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit complement(1912429..1913232) Dickeya zeae Ech1591 8117873 YP_003004005.1 CDS Dd1591_1673 NC_012912.1 1913229 1914020 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: esa:ESA_02406 alkanesulfonate transporter permease subunit; binding-protein-dependent transport systems inner membrane component complement(1913229..1914020) Dickeya zeae Ech1591 8117874 YP_003004006.1 CDS Dd1591_1674 NC_012912.1 1914031 1915179 R catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase complement(1914031..1915179) Dickeya zeae Ech1591 8117875 YP_003004007.1 CDS Dd1591_1675 NC_012912.1 1915211 1916170 R KEGG: spe:Spro_1738 alkanesulfonate transporter substrate-binding subunit; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonate ABC transporter substrate-binding protein complement(1915211..1916170) Dickeya zeae Ech1591 8117876 YP_003004008.1 CDS Dd1591_1676 NC_012912.1 1916198 1916752 R PFAM: NADPH-dependent FMN reductase; KEGG: kpe:KPK_3595 NADPH-dependent FMN reductase; NAD(P)H-dependent FMN reductase complement(1916198..1916752) Dickeya zeae Ech1591 8117877 YP_003004009.1 CDS Dd1591_1677 NC_012912.1 1917211 1918218 D KEGG: eca:ECA2538 dihydroorotate dehydrogenase 2; TIGRFAM: dihydroorotate dehydrogenase; PFAM: dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 1917211..1918218 Dickeya zeae Ech1591 8117878 YP_003004010.1 CDS Dd1591_1678 NC_012912.1 1918495 1919049 D PFAM: protein of unknown function DUF1379; KEGG: eca:ECA2537 hypothetical protein; hypothetical protein 1918495..1919049 Dickeya zeae Ech1591 8117879 YP_003004011.1 CDS Dd1591_1679 NC_012912.1 1919136 1920239 R PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; ferredoxin; KEGG: spe:Spro_1742 MOSC domain-containing protein; MOSC domain-containing protein complement(1919136..1920239) Dickeya zeae Ech1591 8117880 YP_003004012.1 CDS rlmL NC_012912.1 1920420 1922543 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1920420..1922543 Dickeya zeae Ech1591 8117881 YP_003004013.1 CDS Dd1591_1681 NC_012912.1 1922549 1924498 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1922549..1924498 Dickeya zeae Ech1591 8117882 YP_003004014.1 CDS Dd1591_1682 NC_012912.1 1924644 1925912 D TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: eca:ECA2533 paraquat-inducible protein A; integral membrane protein, PqiA family 1924644..1925912 Dickeya zeae Ech1591 8117883 YP_003004015.1 CDS Dd1591_1683 NC_012912.1 1925899 1927545 D PFAM: Mammalian cell entry related domain protein; KEGG: eca:ECA2532 paraquat-inducible protein B; paraquat-inducible protein B 1925899..1927545 Dickeya zeae Ech1591 8117884 YP_003004016.1 CDS Dd1591_1684 NC_012912.1 1927545 1928105 D PFAM: protein of unknown function DUF330; KEGG: eca:ECA2531 putative lipoprotein; hypothetical protein 1927545..1928105 Dickeya zeae Ech1591 8117885 YP_003004017.1 CDS Dd1591_1685 NC_012912.1 1928397 1928564 D PFAM: ribosome modulation factor; KEGG: yps:YPTB1448 putative ribosome modulation factor; ribosome modulation factor 1928397..1928564 Dickeya zeae Ech1591 8117886 YP_003004018.1 CDS Dd1591_1686 NC_012912.1 1928659 1929711 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1928659..1929711) Dickeya zeae Ech1591 8117887 YP_003004019.1 CDS Dd1591_1687 NC_012912.1 1929764 1929898 D hypothetical protein 1929764..1929898 Dickeya zeae Ech1591 8117888 YP_003004020.1 CDS Dd1591_1688 NC_012912.1 1929895 1930716 R PFAM: protein of unknown function DUF299; KEGG: eca:ECA1852 hypothetical protein; hypothetical protein complement(1929895..1930716) Dickeya zeae Ech1591 8117889 YP_003004021.1 CDS Dd1591_1689 NC_012912.1 1931033 1933411 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1931033..1933411 Dickeya zeae Ech1591 8117890 YP_003004022.1 CDS Dd1591_1690 NC_012912.1 1933908 1935020 R YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein complement(1933908..1935020) Dickeya zeae Ech1591 8117891 YP_003004023.1 CDS Dd1591_1691 NC_012912.1 1935359 1938418 D PFAM: FAD linked oxidase domain protein; KEGG: eca:ECA1856 putative FAD-binding oxidase; FAD linked oxidase domain-containing protein 1935359..1938418 Dickeya zeae Ech1591 8117892 YP_003004024.1 CDS Dd1591_1692 NC_012912.1 1938418 1938840 D PFAM: thioesterase superfamily protein; KEGG: eca:ECA1857 hypothetical protein; thioesterase superfamily protein 1938418..1938840 Dickeya zeae Ech1591 8117893 YP_003004025.1 CDS Dd1591_1693 NC_012912.1 1938909 1939310 R KEGG: eca:ECA1858 hypothetical protein; hypothetical protein complement(1938909..1939310) Dickeya zeae Ech1591 8117894 YP_003004026.1 CDS Dd1591_1694 NC_012912.1 1939859 1940233 D TIGRFAM: FeS assembly scaffold SufA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: eca:ECA1859 iron-sulfur cluster assembly scaffold protein; FeS assembly scaffold SufA 1939859..1940233 Dickeya zeae Ech1591 8117895 YP_003004027.1 CDS Dd1591_1695 NC_012912.1 1940248 1941747 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1940248..1941747 Dickeya zeae Ech1591 8117896 YP_003004028.1 CDS sufC NC_012912.1 1941835 1942581 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase ATPase component 1941835..1942581 Dickeya zeae Ech1591 8117897 YP_003004029.1 CDS Dd1591_1697 NC_012912.1 1942556 1943848 D TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: eca:ECA1862 cysteine desulfurase activator complex subunit SufD; FeS assembly protein SufD 1942556..1943848 Dickeya zeae Ech1591 8117898 YP_003004030.1 CDS Dd1591_1698 NC_012912.1 1943845 1945098 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: eca:ECA1863 selenocysteine lyase; SufS subfamily cysteine desulfurase 1943845..1945098 Dickeya zeae Ech1591 8117899 YP_003004031.1 CDS Dd1591_1699 NC_012912.1 1945137 1945583 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1945137..1945583 Dickeya zeae Ech1591 8117900 YP_003004032.1 CDS Dd1591_1700 NC_012912.1 1945825 1946826 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: eca:ECA1865 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1945825..1946826 Dickeya zeae Ech1591 8117901 YP_003004033.1 CDS Dd1591_1701 NC_012912.1 1946998 1947234 R PFAM: LPP repeat-containing protein; KEGG: eca:ECA1866 major outer membrane lipoprotein; LPP repeat-containing protein complement(1946998..1947234) Dickeya zeae Ech1591 8117902 YP_003004034.1 CDS Dd1591_1702 NC_012912.1 1947542 1948954 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1947542..1948954) Dickeya zeae Ech1591 8117903 YP_003004035.1 CDS Dd1591_1703 NC_012912.1 1949933 1950784 D PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: eca:ECA1869 beta-glucoside operon antiterminator; transcriptional antiterminator BglG 1949933..1950784 Dickeya zeae Ech1591 8117904 YP_003004036.1 CDS Dd1591_1704 NC_012912.1 1951078 1952988 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system beta-glucoside-specific transporter subunits IIABC 1951078..1952988 Dickeya zeae Ech1591 8117905 YP_003004037.1 CDS Dd1591_1705 NC_012912.1 1953021 1954418 D PFAM: glycoside hydrolase family 1; KEGG: eca:ECA1871 6-phospho-beta-glucosidase; glycoside hydrolase family 1 1953021..1954418 Dickeya zeae Ech1591 8117906 YP_003004038.1 CDS Dd1591_1706 NC_012912.1 1954596 1956194 D PFAM: porin LamB type; KEGG: efe:EFER_4018 carbohydrate-specific outer membrane porin, cryptic; porin LamB type 1954596..1956194 Dickeya zeae Ech1591 8116787 YP_003004039.1 CDS Dd1591_1707 NC_012912.1 1956253 1957437 D PFAM: putative esterase; glycoside hydrolase family 13 domain protein; KEGG: eca:ECA1873 putative glycosyl hydrolase exoenzyme; putative esterase 1956253..1957437 Dickeya zeae Ech1591 8116788 YP_003004040.1 CDS Dd1591_1708 NC_012912.1 1957823 1958017 R KEGG: pla:Plav_3399 hypothetical protein; hypothetical protein complement(1957823..1958017) Dickeya zeae Ech1591 8116789 YP_003004041.1 CDS Dd1591_1709 NC_012912.1 1958322 1958777 R KEGG: bid:Bind_1489 hypothetical protein; hypothetical protein complement(1958322..1958777) Dickeya zeae Ech1591 8116790 YP_003004042.1 CDS Dd1591_1710 NC_012912.1 1958818 1959660 R PFAM: NmrA family protein; KEGG: rpd:RPD_2341 NmrA-like; NmrA family protein complement(1958818..1959660) Dickeya zeae Ech1591 8116791 YP_003004043.1 CDS Dd1591_1711 NC_012912.1 1959763 1960686 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rlt:Rleg2_6348 transcriptional regulator, AraC family; AraC family transcriptional regulator 1959763..1960686 Dickeya zeae Ech1591 8116792 YP_003004044.1 CDS Dd1591_1712 NC_012912.1 1961789 1963162 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(1961789..1963162) Dickeya zeae Ech1591 8116795 YP_003004045.1 CDS Dd1591_1713 NC_012912.1 1963551 1964204 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1963551..1964204 Dickeya zeae Ech1591 8116796 YP_003004046.1 CDS Dd1591_1714 NC_012912.1 1964301 1965452 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane fatty acyl phospholipid synthase complement(1964301..1965452) Dickeya zeae Ech1591 8116797 YP_003004047.1 CDS Dd1591_1715 NC_012912.1 1965872 1966897 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR complement(1965872..1966897) Dickeya zeae Ech1591 8116798 YP_003004048.1 CDS Dd1591_1716 NC_012912.1 1967253 1967372 D hypothetical protein 1967253..1967372 Dickeya zeae Ech1591 8116799 YP_003004049.1 CDS Dd1591_1717 NC_012912.1 1967504 1968478 R PFAM: NLP/P60 protein; KEGG: eca:ECA1926 hypothetical protein; NLP/P60 protein complement(1967504..1968478) Dickeya zeae Ech1591 8116800 YP_003004050.1 CDS Dd1591_1718 NC_012912.1 1968809 1969159 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: eca:ECA1927 hypothetical protein; hypothetical protein 1968809..1969159 Dickeya zeae Ech1591 8116801 YP_003004051.1 CDS Dd1591_1719 NC_012912.1 1969261 1969941 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1969261..1969941) Dickeya zeae Ech1591 8116802 YP_003004052.1 CDS Dd1591_1720 NC_012912.1 1970073 1970480 R KEGG: spe:Spro_2200 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(1970073..1970480) Dickeya zeae Ech1591 8116803 YP_003004053.1 CDS Dd1591_1722 NC_012912.1 1971158 1971595 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1971158..1971595 Dickeya zeae Ech1591 8116805 YP_003004054.1 CDS Dd1591_1723 NC_012912.1 1972020 1972487 R PFAM: 17 kDa surface antigen; KEGG: eca:ECA1932 outer membrane lipoprotein; 17 kDa surface antigen complement(1972020..1972487) Dickeya zeae Ech1591 8116806 YP_003004055.1 CDS anmK NC_012912.1 1972826 1973938 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1972826..1973938 Dickeya zeae Ech1591 8116807 YP_003004056.1 CDS Dd1591_1725 NC_012912.1 1974045 1974353 D KEGG: eca:ECA1934 putative lipoprotein; putative lipoprotein 1974045..1974353 Dickeya zeae Ech1591 8116808 YP_003004057.1 CDS Dd1591_1726 NC_012912.1 1974468 1975166 D KEGG: eca:ECA1935 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 1974468..1975166 Dickeya zeae Ech1591 8116809 YP_003004058.1 CDS Dd1591_1727 NC_012912.1 1975308 1976582 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1975308..1976582 Dickeya zeae Ech1591 8116810 YP_003004059.1 CDS Dd1591_1728 NC_012912.1 1976793 1977653 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1976793..1977653 Dickeya zeae Ech1591 8116811 YP_003004060.1 CDS Dd1591_1729 NC_012912.1 1977743 1978357 R PFAM: Glutathione S-transferase domain; KEGG: eca:ECA1938 glutathione S-transferase; Glutathione S-transferase domain-containing protein complement(1977743..1978357) Dickeya zeae Ech1591 8116812 YP_003004061.1 CDS Dd1591_1730 NC_012912.1 1978805 1981498 D TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: eca:ECA1941 aconitate hydratase; aconitate hydratase 1 1978805..1981498 Dickeya zeae Ech1591 8116813 YP_003004062.1 CDS Dd1591_1731 NC_012912.1 1981684 1983303 D PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA1942 putative periplasmic oligopeptide-binding protein; extracellular solute-binding protein family 5 1981684..1983303 Dickeya zeae Ech1591 8116814 YP_003004063.1 CDS ribA NC_012912.1 1983348 1983941 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(1983348..1983941) Dickeya zeae Ech1591 8116815 YP_003004064.1 CDS Dd1591_1733 NC_012912.1 1984195 1984968 D KEGG: eca:ECA1944 phosphatidylglycerophosphatase B; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; phosphatidylglycerophosphatase B 1984195..1984968 Dickeya zeae Ech1591 8116816 YP_003004065.1 CDS Dd1591_1734 NC_012912.1 1985215 1985523 D PFAM: protein of unknown function DUF1049; KEGG: eca:ECA1955 hypothetical protein; hypothetical protein 1985215..1985523 Dickeya zeae Ech1591 8116817 YP_003004066.1 CDS Dd1591_1735 NC_012912.1 1985535 1986704 D SMART: Tetratricopeptide domain protein; KEGG: eca:ECA1956 hypothetical protein; hypothetical protein 1985535..1986704 Dickeya zeae Ech1591 8116818 YP_003004067.1 CDS Dd1591_1736 NC_012912.1 1986883 1987617 D KEGG: eta:ETA_16210 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1986883..1987617 Dickeya zeae Ech1591 8116819 YP_003004068.1 CDS Dd1591_1737 NC_012912.1 1987617 1987943 D TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1; KEGG: eum:ECUMN_1585 hypothetical protein; translation initiation factor SUI1 1987617..1987943 Dickeya zeae Ech1591 8116820 YP_003004069.1 CDS Dd1591_1738 NC_012912.1 1988468 1988683 R KEGG: ent:Ent638_2185 lipoprotein; lipoprotein complement(1988468..1988683) Dickeya zeae Ech1591 8116821 YP_003004070.1 CDS araD NC_012912.1 1989014 1989709 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 1989014..1989709 Dickeya zeae Ech1591 8116822 YP_003004071.1 CDS Dd1591_1740 NC_012912.1 1990068 1991081 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 1990068..1991081 Dickeya zeae Ech1591 8116823 YP_003004072.1 CDS Dd1591_1741 NC_012912.1 1991198 1993264 R PFAM: carbon starvation protein CstA; KEGG: eca:ECA1961 carbon starvation protein; carbon starvation protein CstA complement(1991198..1993264) Dickeya zeae Ech1591 8116824 YP_003004073.1 CDS Dd1591_1742 NC_012912.1 1993658 1994575 R PFAM: aldo/keto reductase; KEGG: eca:ECA1962 putative oxidoreductase; aldo/keto reductase complement(1993658..1994575) Dickeya zeae Ech1591 8116825 YP_003004074.1 CDS Dd1591_1743 NC_012912.1 1994679 1996610 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(1994679..1996610) Dickeya zeae Ech1591 8116826 YP_003004075.1 CDS Dd1591_1744 NC_012912.1 1996751 1997224 R KEGG: nmn:NMCC_0222 putative inner membrane protein; putative inner membrane protein complement(1996751..1997224) Dickeya zeae Ech1591 8116827 YP_003004076.1 CDS Dd1591_1745 NC_012912.1 1997211 1997417 R hypothetical protein complement(1997211..1997417) Dickeya zeae Ech1591 8116828 YP_003004077.1 CDS Dd1591_1746 NC_012912.1 1997602 1999911 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: eca:ECA1964 putative molybdopterin oxidoreductase; oxidoreductase alpha (molybdopterin) subunit complement(1997602..1999911) Dickeya zeae Ech1591 8116829 YP_003004078.1 CDS Dd1591_1747 NC_012912.1 2000206 2000997 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(2000206..2000997) Dickeya zeae Ech1591 8116830 YP_003004079.1 CDS Dd1591_1748 NC_012912.1 2001182 2001997 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1973 peptide transport system ATP-binding protein; ABC transporter complement(2001182..2001997) Dickeya zeae Ech1591 8116831 YP_003004080.1 CDS Dd1591_1749 NC_012912.1 2001997 2002989 R KEGG: eca:ECA1974 peptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase complement(2001997..2002989) Dickeya zeae Ech1591 8116832 YP_003004081.1 CDS Dd1591_1750 NC_012912.1 2003005 2003895 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1975 peptide transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(2003005..2003895) Dickeya zeae Ech1591 8116833 YP_003004082.1 CDS Dd1591_1751 NC_012912.1 2003882 2004847 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1976 peptide transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(2003882..2004847) Dickeya zeae Ech1591 8116834 YP_003004083.1 CDS Dd1591_1752 NC_012912.1 2004844 2006592 R PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA1977 peptide transport periplasmic protein; extracellular solute-binding protein family 5 complement(2004844..2006592) Dickeya zeae Ech1591 8116835 YP_003004084.1 CDS pspF NC_012912.1 2006728 2007720 R transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator complement(2006728..2007720) Dickeya zeae Ech1591 8116836 YP_003004085.1 CDS Dd1591_1754 NC_012912.1 2007940 2008605 D involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 2007940..2008605 Dickeya zeae Ech1591 8116837 YP_003004086.1 CDS Dd1591_1755 NC_012912.1 2008669 2008896 D TIGRFAM: phage shock protein B; PFAM: shock B family protein; KEGG: eca:ECA1984 phage shock protein B; phage shock protein B 2008669..2008896 Dickeya zeae Ech1591 8116838 YP_003004087.1 CDS Dd1591_1756 NC_012912.1 2008896 2009255 D with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 2008896..2009255 Dickeya zeae Ech1591 8116839 YP_003004088.1 CDS Dd1591_1757 NC_012912.1 2009403 2010818 D PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: eca:ECA1986 hypothetical protein; hypothetical protein 2009403..2010818 Dickeya zeae Ech1591 8116840 YP_003004089.1 CDS Dd1591_1758 NC_012912.1 2010815 2011894 D PFAM: conserved hypothetical protein; KEGG: eca:ECA1987 hypothetical protein; hypothetical protein 2010815..2011894 Dickeya zeae Ech1591 8116841 YP_003004090.1 CDS Dd1591_1759 NC_012912.1 2012138 2013556 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: spe:Spro_3193 major facilitator transporter; major facilitator superfamily protein 2012138..2013556 Dickeya zeae Ech1591 8116842 YP_003004091.1 CDS Dd1591_1760 NC_012912.1 2013956 2015518 D PFAM: peptidase dimerisation domain protein; KEGG: eca:ECA1988 putative peptidase; peptidase dimerisation domain-containing protein 2013956..2015518 Dickeya zeae Ech1591 8116843 YP_003004092.1 CDS Dd1591_1761 NC_012912.1 2015591 2017201 D regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 2015591..2017201 Dickeya zeae Ech1591 8116844 YP_003004093.1 CDS Dd1591_1762 NC_012912.1 2017291 2017518 R hypothetical protein complement(2017291..2017518) Dickeya zeae Ech1591 8116845 YP_003004094.1 CDS Dd1591_1763 NC_012912.1 2017766 2018035 D hypothetical protein 2017766..2018035 Dickeya zeae Ech1591 8116846 YP_003004095.1 CDS Dd1591_1764 NC_012912.1 2018135 2018683 R PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_0446 putative acetyltransferase; GCN5-related N-acetyltransferase complement(2018135..2018683) Dickeya zeae Ech1591 8116847 YP_003004096.1 CDS Dd1591_1765 NC_012912.1 2018805 2021138 D PFAM: peptidase S45 penicillin amidase; KEGG: bpl:BURPS1106A_0792 putative penicillin amidase; peptidase S45 penicillin amidase 2018805..2021138 Dickeya zeae Ech1591 8116848 YP_003004097.1 CDS Dd1591_1766 NC_012912.1 2021157 2022077 R SMART: helix-turn-helix domain protein; KEGG: pap:PSPA7_4128 hypothetical protein; helix-turn-helix domain-containing protein complement(2021157..2022077) Dickeya zeae Ech1591 8116849 YP_003004098.1 CDS Dd1591_1767 NC_012912.1 2022206 2023627 D PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA1262 major facilitator transporter; major facilitator superfamily protein 2022206..2023627 Dickeya zeae Ech1591 8116850 YP_003004099.1 CDS tpx NC_012912.1 2023711 2024214 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(2023711..2024214) Dickeya zeae Ech1591 8116851 YP_003004100.1 CDS Dd1591_1769 NC_012912.1 2024270 2025001 R PFAM: peptidase M14 carboxypeptidase A; KEGG: efe:EFER_1648 murein peptide amidase A; murein peptide amidase A complement(2024270..2025001) Dickeya zeae Ech1591 8116852 YP_003004101.1 CDS Dd1591_1770 NC_012912.1 2025209 2026891 D PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA1992 periplasmic murein peptide-binding protein; extracellular solute-binding protein family 5 2025209..2026891 Dickeya zeae Ech1591 8116853 YP_003004102.1 CDS Dd1591_1771 NC_012912.1 2026935 2027099 D hypothetical protein 2026935..2027099 Dickeya zeae Ech1591 8116854 YP_003004103.1 CDS zntB NC_012912.1 2027090 2028073 D PFAM: Mg2 transporter protein CorA family protein; KEGG: eca:ECA1993 zinc transporter; zinc transporter 2027090..2028073 Dickeya zeae Ech1591 8116855 YP_003004104.1 CDS Dd1591_1773 NC_012912.1 2028602 2029543 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(2028602..2029543) Dickeya zeae Ech1591 8116856 YP_003004105.1 CDS Dd1591_1774 NC_012912.1 2029791 2031884 R KEGG: pst:PSPTO_5206 EF hand domain-containing protein; hypothetical protein complement(2029791..2031884) Dickeya zeae Ech1591 8116857 YP_003004106.1 CDS Dd1591_1775 NC_012912.1 2032409 2032906 D hypothetical protein 2032409..2032906 Dickeya zeae Ech1591 8116858 YP_003004107.1 CDS Dd1591_1776 NC_012912.1 2033068 2035032 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA2580 putative methyl-accepting chemotaxis citrate transducer; methyl-accepting chemotaxis sensory transducer complement(2033068..2035032) Dickeya zeae Ech1591 8116859 YP_003004108.1 CDS Dd1591_1777 NC_012912.1 2035335 2035613 D PFAM: protein of unknown function DUF333; KEGG: eca:ECA1999 putative lipoprotein; hypothetical protein 2035335..2035613 Dickeya zeae Ech1591 8116860 YP_003004109.1 CDS Dd1591_1778 NC_012912.1 2035648 2036640 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: eca:ECA2000 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(2035648..2036640) Dickeya zeae Ech1591 8116861 YP_003004110.1 CDS Dd1591_1779 NC_012912.1 2036837 2038390 R KEGG: eca:ECA2002 aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer complement(2036837..2038390) Dickeya zeae Ech1591 8116862 YP_003004111.1 CDS Dd1591_1780 NC_012912.1 2038698 2041301 D KEGG: eca:ECA2003 hypothetical protein; hypothetical protein 2038698..2041301 Dickeya zeae Ech1591 8116863 YP_003004112.1 CDS Dd1591_1781 NC_012912.1 2041330 2041602 D KEGG: eca:ECA2004 putative lipoprotein; hypothetical protein 2041330..2041602 Dickeya zeae Ech1591 8116864 YP_003004113.1 CDS Dd1591_1782 NC_012912.1 2041664 2042269 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(2041664..2042269) Dickeya zeae Ech1591 8116865 YP_003004114.1 CDS Dd1591_1783 NC_012912.1 2042584 2046471 D involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 2042584..2046471 Dickeya zeae Ech1591 8116866 YP_003004115.1 CDS Dd1591_1785 NC_012912.1 2046672 2048222 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: eca:ECA1921 L-lactate permease; L-lactate transport complement(2046672..2048222) Dickeya zeae Ech1591 8117268 YP_003004116.1 CDS Dd1591_1786 NC_012912.1 2048545 2049363 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: eca:ECA2009 putative exported protease; peptidase S1 and S6 chymotrypsin/Hap complement(2048545..2049363) Dickeya zeae Ech1591 8117269 YP_003004117.1 CDS Dd1591_1787 NC_012912.1 2049460 2049576 D hypothetical protein 2049460..2049576 Dickeya zeae Ech1591 8117270 YP_003004118.1 CDS Dd1591_1788 NC_012912.1 2049669 2050226 D KEGG: hypothetical protein; hypothetical protein 2049669..2050226 Dickeya zeae Ech1591 8117271 YP_003004119.1 CDS Dd1591_1789 NC_012912.1 2050413 2051768 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: eca:ECA2012 sensor protein RstB; sensor protein RstB complement(2050413..2051768) Dickeya zeae Ech1591 8117272 YP_003004120.1 CDS Dd1591_1790 NC_012912.1 2051765 2052511 R response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA complement(2051765..2052511) Dickeya zeae Ech1591 8117273 YP_003004121.1 CDS Dd1591_1791 NC_012912.1 2053016 2053450 D KEGG: spe:Spro_2588 hypothetical protein; hypothetical protein 2053016..2053450 Dickeya zeae Ech1591 8117274 YP_003004122.1 CDS Dd1591_1792 NC_012912.1 2053502 2055217 R TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: eca:ECA2021 putative sulfate transporter YchM; sulfate transporter complement(2053502..2055217) Dickeya zeae Ech1591 8117275 YP_003004123.1 CDS Dd1591_1793 NC_012912.1 2055491 2056591 R TIGRFAM: calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; KEGG: eca:ECA2022 calcium/sodium:proton antiporter; calcium/sodium:proton antiporter complement(2055491..2056591) Dickeya zeae Ech1591 8117276 YP_003004124.1 CDS Dd1591_1794 NC_012912.1 2057163 2057837 D PFAM: ChaC family protein; KEGG: eca:ECA2025 putative cation transport protein; ChaC family protein 2057163..2057837 Dickeya zeae Ech1591 8117277 YP_003004125.1 CDS Dd1591_1795 NC_012912.1 2058023 2059063 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2915 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2058023..2059063 Dickeya zeae Ech1591 8117278 YP_003004126.1 CDS Dd1591_1796 NC_012912.1 2059060 2059920 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2914 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2059060..2059920 Dickeya zeae Ech1591 8117279 YP_003004127.1 CDS Dd1591_1797 NC_012912.1 2059907 2060755 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_2913 ABC transporter-related protein; ABC transporter 2059907..2060755 Dickeya zeae Ech1591 8117280 YP_003004128.1 CDS Dd1591_1798 NC_012912.1 2060748 2061431 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_2060 ABC transporter related; ABC transporter 2060748..2061431 Dickeya zeae Ech1591 8117281 YP_003004129.1 CDS Dd1591_1799 NC_012912.1 2061520 2063115 D PFAM: extracellular solute-binding protein family 5; KEGG: eta:ETA_25780 ABC transporter, periplasmic oligopeptide-binding protein; extracellular solute-binding protein family 5 2061520..2063115 Dickeya zeae Ech1591 8117282 YP_003004130.1 CDS Dd1591_1800 NC_012912.1 2063488 2064195 D PFAM: metallophosphoesterase; KEGG: eum:ECUMN_2132 serine/threonine-specific protein phosphatase 1; metallophosphoesterase 2063488..2064195 Dickeya zeae Ech1591 8117283 YP_003004131.1 CDS Dd1591_1801 NC_012912.1 2064251 2064763 D KEGG: kpn:KPN_00487 hypothetical protein; hypothetical protein 2064251..2064763 Dickeya zeae Ech1591 8117284 YP_003004132.1 CDS Dd1591_1802 NC_012912.1 2064850 2066397 R KEGG: eta:ETA_30660 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; PAS domain containing protein; methyl-accepting chemotaxis sensory transducer complement(2064850..2066397) Dickeya zeae Ech1591 8117285 YP_003004133.1 CDS Dd1591_1803 NC_012912.1 2066950 2067111 D hypothetical protein 2066950..2067111 Dickeya zeae Ech1591 8117286 YP_003004134.1 CDS Dd1591_1804 NC_012912.1 2067235 2068923 R PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; ligand binding Tar domain protein; KEGG: spe:Spro_2983 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2067235..2068923) Dickeya zeae Ech1591 8117287 YP_003004135.1 CDS Dd1591_1805 NC_012912.1 2069176 2070990 R KEGG: spe:Spro_2420 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; PAS/PAC and GAF sensors-containing diguanylate cyclase complement(2069176..2070990) Dickeya zeae Ech1591 8117288 YP_003004136.1 CDS Dd1591_1806 NC_012912.1 2071180 2071296 D hypothetical protein 2071180..2071296 Dickeya zeae Ech1591 8117289 YP_003004137.1 CDS Dd1591_1807 NC_012912.1 2071303 2072643 R TIGRFAM: guanine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: vha:VIBHAR_01787 hypothetical protein; guanine deaminase complement(2071303..2072643) Dickeya zeae Ech1591 8117290 YP_003004138.1 CDS Dd1591_1808 NC_012912.1 2073029 2073220 R PFAM: transcriptional activator Ogr/delta; KEGG: ent:Ent638_3475 DNA-binding transcriptional regulator; transcriptional activator Ogr/delta complement(2073029..2073220) Dickeya zeae Ech1591 8117291 YP_003004139.1 CDS Dd1591_1809 NC_012912.1 2073316 2074491 R PFAM: late control D family protein; KEGG: ecg:E2348C_2892 predicted late gene regulator; late control D family protein complement(2073316..2074491) Dickeya zeae Ech1591 8117292 YP_003004140.1 CDS Dd1591_1810 NC_012912.1 2074488 2074985 R PFAM: P2 GpU family protein; KEGG: yps:YPTB1740 putative phage tail protein; P2 GpU family protein complement(2074488..2074985) Dickeya zeae Ech1591 8117293 YP_003004141.1 CDS Dd1591_1811 NC_012912.1 2074993 2076069 R KEGG: GG20978 gene product from transcript GG20978-RA; hypothetical protein complement(2074993..2076069) Dickeya zeae Ech1591 8117294 YP_003004142.1 CDS Dd1591_1812 NC_012912.1 2076062 2076181 R PFAM: P2 GpE family protein; KEGG: ecm:EcSMS35_4348 phage tail protein, P2 GpE family; P2 GpE family protein complement(2076062..2076181) Dickeya zeae Ech1591 8117295 YP_003004143.1 CDS Dd1591_1813 NC_012912.1 2076214 2076504 R PFAM: tail E family protein; KEGG: ecz:ECS88_2189 tail protein E (GpE); tail E family protein complement(2076214..2076504) Dickeya zeae Ech1591 8117296 YP_003004144.1 CDS Dd1591_1814 NC_012912.1 2076565 2077083 R TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: see:SNSL254_A4384 phage major tail tube protein; phage major tail tube protein complement(2076565..2077083) Dickeya zeae Ech1591 8117297 YP_003004145.1 CDS Dd1591_1815 NC_012912.1 2077098 2078267 R PFAM: tail sheath protein; KEGG: spe:Spro_0863 tail sheath protein; tail sheath protein complement(2077098..2078267) Dickeya zeae Ech1591 8117298 YP_003004146.1 CDS Dd1591_1816 NC_012912.1 2078485 2079096 R PFAM: tail assembly chaperone gp38; KEGG: plu:plu2035 hypothetical protein; tail assembly chaperone gp38 complement(2078485..2079096) Dickeya zeae Ech1591 8117299 YP_003004147.1 CDS Dd1591_1817 NC_012912.1 2079099 2079689 R PFAM: Tail Collar domain protein; KEGG: sty:STY1642 alternative bacteriophage tail fiber C-terminus; Tail Collar domain-containing protein complement(2079099..2079689) Dickeya zeae Ech1591 8117300 YP_003004148.1 CDS Dd1591_1818 NC_012912.1 2079873 2080427 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: kpe:KPK_2840 DNA-invertase hin; Resolvase domain-containing protein complement(2079873..2080427) Dickeya zeae Ech1591 8117301 YP_003004149.1 CDS Dd1591_1819 NC_012912.1 2080452 2080952 D PFAM: Tail Collar domain protein; KEGG: stt:t3433 variable tail fiber protein; Tail Collar domain-containing protein 2080452..2080952 Dickeya zeae Ech1591 8117302 YP_003004150.1 CDS Dd1591_1820 NC_012912.1 2081103 2081669 D PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: esa:ESA_01951 hypothetical protein; Smr protein/MutS2 2081103..2081669 Dickeya zeae Ech1591 8117303 YP_003004151.1 CDS Dd1591_1821 NC_012912.1 2081732 2083078 R PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: spe:Spro_2512 major facilitator transporter; major facilitator superfamily protein complement(2081732..2083078) Dickeya zeae Ech1591 8117304 YP_003004152.1 CDS Dd1591_1822 NC_012912.1 2083235 2084590 R KEGG: spe:Spro_1010 hypothetical protein; hypothetical protein complement(2083235..2084590) Dickeya zeae Ech1591 8117305 YP_003004153.1 CDS Dd1591_1823 NC_012912.1 2084754 2085959 R PFAM: Tail Collar domain protein; KEGG: eta:ETA_05860 putative phage tail fiber protein; Tail Collar domain-containing protein complement(2084754..2085959) Dickeya zeae Ech1591 8117306 YP_003004154.1 CDS Dd1591_1824 NC_012912.1 2086194 2086805 R TIGRFAM: phage tail protein I; KEGG: yps:YPTB1748 putative bacteriophage protein; phage tail protein I complement(2086194..2086805) Dickeya zeae Ech1591 8117307 YP_003004155.1 CDS Dd1591_1825 NC_012912.1 2086798 2087706 R PFAM: Baseplate J family protein; KEGG: ecf:ECH74115_3037 baseplate assembly protein GpJ; baseplate J family protein complement(2086798..2087706) Dickeya zeae Ech1591 8117308 YP_003004156.1 CDS Dd1591_1826 NC_012912.1 2087711 2088061 R PFAM: GPW/gp25 family protein; KEGG: kpn:KPN_04869 putative prophage baseplate protein; GPW/gp25 family protein complement(2087711..2088061) Dickeya zeae Ech1591 8117309 YP_003004157.1 CDS Dd1591_1827 NC_012912.1 2088058 2088711 R TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: ecm:EcSMS35_4337 phage baseplate assembly protein GpV; phage baseplate assembly protein V complement(2088058..2088711) Dickeya zeae Ech1591 8117310 YP_003004158.1 CDS Dd1591_1828 NC_012912.1 2089121 2089582 R PFAM: P2 phage tail completion R family protein; KEGG: kpn:KPN_04873 putative prophage, tail completion protein; P2 phage tail completion R family protein complement(2089121..2089582) Dickeya zeae Ech1591 8117311 YP_003004159.1 CDS Dd1591_1829 NC_012912.1 2089624 2089827 R PFAM: tail X family protein; KEGG: eta:ETA_05750 putative phage tail protein; tail X family protein complement(2089624..2089827) Dickeya zeae Ech1591 8117312 YP_003004160.1 CDS Dd1591_1830 NC_012912.1 2090276 2090407 R hypothetical protein complement(2090276..2090407) Dickeya zeae Ech1591 8117313 YP_003004161.1 CDS Dd1591_1831 NC_012912.1 2090417 2090536 R hypothetical protein complement(2090417..2090536) Dickeya zeae Ech1591 8117314 YP_003004162.1 CDS Dd1591_1832 NC_012912.1 2090702 2092897 R PFAM: replication gene A; KEGG: spe:Spro_0874 replication gene A; replication gene A protein complement(2090702..2092897) Dickeya zeae Ech1591 8117315 YP_003004163.1 CDS Dd1591_1833 NC_012912.1 2092945 2093169 R TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: yen:YE1687 hypothetical protein; TraR/DksA family transcriptional regulator complement(2092945..2093169) Dickeya zeae Ech1591 8117316 YP_003004164.1 CDS Dd1591_1834 NC_012912.1 2093169 2093378 R hypothetical protein complement(2093169..2093378) Dickeya zeae Ech1591 8117317 YP_003004165.1 CDS Dd1591_1835 NC_012912.1 2093530 2094042 R KEGG: ecz:ECS88_2224 replication gene B protein (GpB); replication gene B protein (GpB) complement(2093530..2094042) Dickeya zeae Ech1591 8117318 YP_003004166.1 CDS Dd1591_1836 NC_012912.1 2094045 2094509 R hypothetical protein complement(2094045..2094509) Dickeya zeae Ech1591 8117319 YP_003004167.1 CDS Dd1591_1837 NC_012912.1 2094664 2095476 D PFAM: CI repressor; KEGG: spe:Spro_0877 CI repressor; CI repressor 2094664..2095476 Dickeya zeae Ech1591 8117320 YP_003004168.1 CDS Dd1591_1838 NC_012912.1 2096205 2098208 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ypg:YpAngola_A3774 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2096205..2098208 Dickeya zeae Ech1591 8117321 YP_003004169.1 CDS Dd1591_1839 NC_012912.1 2098422 2098613 R PFAM: protein of unknown function DUF1482; KEGG: kpn:KPN_02353 hypothetical protein; hypothetical protein complement(2098422..2098613) Dickeya zeae Ech1591 8117322 YP_003004170.1 CDS yebU NC_012912.1 2098706 2100154 R in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF complement(2098706..2100154) Dickeya zeae Ech1591 8117323 YP_003004171.1 CDS Dd1591_1841 NC_012912.1 2100276 2102906 R PFAM: Mammalian cell entry related domain protein; KEGG: eca:ECA2463 hypothetical protein; mammalian cell entry related domain-containing protein complement(2100276..2102906) Dickeya zeae Ech1591 8117324 YP_003004172.1 CDS Dd1591_1842 NC_012912.1 2102950 2104314 R TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: eca:ECA2462 hypothetical protein; integral membrane protein, PqiA family complement(2102950..2104314) Dickeya zeae Ech1591 8117325 YP_003004173.1 CDS Dd1591_1843 NC_012912.1 2104486 2104992 D PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: eca:ECA2461 hypothetical protein; putative GAF sensor protein 2104486..2104992 Dickeya zeae Ech1591 8117326 YP_003004174.1 CDS Dd1591_1844 NC_012912.1 2105077 2105808 D affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2105077..2105808 Dickeya zeae Ech1591 8117327 YP_003004175.1 CDS Dd1591_1845 NC_012912.1 2105828 2107849 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2105828..2107849 Dickeya zeae Ech1591 8117328 YP_003004176.1 CDS Dd1591_1846 NC_012912.1 2108013 2109068 R PFAM: protein of unknown function DUF481; KEGG: eca:ECA2026 hypothetical protein; hypothetical protein complement(2108013..2109068) Dickeya zeae Ech1591 8117329 YP_003004177.1 CDS Dd1591_1847 NC_012912.1 2109299 2110567 R PFAM: acyltransferase 3; KEGG: eca:ECA2027 putative acyltransferase; acyltransferase 3 complement(2109299..2110567) Dickeya zeae Ech1591 8117330 YP_003004178.1 CDS Dd1591_1848 NC_012912.1 2110829 2111476 R two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL complement(2110829..2111476) Dickeya zeae Ech1591 8117331 YP_003004179.1 CDS Dd1591_1849 NC_012912.1 2111469 2113280 R KEGG: eca:ECA2029 nitrate/nitrite sensor protein NarX; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; nitrate/nitrite sensor protein NarX complement(2111469..2113280) Dickeya zeae Ech1591 8117332 YP_003004180.1 CDS Dd1591_1850 NC_012912.1 2113742 2115133 D TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA2030 nitrite extrusion protein; nitrite transporter 2113742..2115133 Dickeya zeae Ech1591 8117333 YP_003004181.1 CDS Dd1591_1851 NC_012912.1 2115236 2116243 R PFAM: beta-lactamase domain protein; KEGG: eca:ECA2849 metallo-beta-lactamase; beta-lactamase domain-containing protein complement(2115236..2116243) Dickeya zeae Ech1591 8117334 YP_003004182.1 CDS Dd1591_1852 NC_012912.1 2116360 2117250 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA2848 LysR family transcriptional regulator; LysR family transcriptional regulator 2116360..2117250 Dickeya zeae Ech1591 8117335 YP_003004183.1 CDS Dd1591_1853 NC_012912.1 2117585 2121358 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: eca:ECA2031 respiratory nitrate reductase 1 alpha chain; nitrate reductase subunit alpha 2117585..2121358 Dickeya zeae Ech1591 8117336 YP_003004184.1 CDS Dd1591_1854 NC_012912.1 2121355 2122917 D TIGRFAM: nitrate reductase, beta subunit; KEGG: eca:ECA2032 respiratory nitrate reductase 1 beta chain; nitrate reductase subunit beta 2121355..2122917 Dickeya zeae Ech1591 8117337 YP_003004185.1 CDS Dd1591_1855 NC_012912.1 2122914 2123633 D KEGG: eca:ECA2033 respiratory nitrate reductase 1 delta chain; TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; nitrate reductase molybdenum cofactor assembly chaperone 2122914..2123633 Dickeya zeae Ech1591 8117338 YP_003004186.1 CDS Dd1591_1856 NC_012912.1 2123633 2124310 D KEGG: kpe:KPK_2098 respiratory nitrate reductase 1, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 2123633..2124310 Dickeya zeae Ech1591 8117339 YP_003004187.1 CDS Dd1591_1857 NC_012912.1 2124684 2125832 D PFAM: iron-containing alcohol dehydrogenase; KEGG: ilo:IL0796 alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2124684..2125832 Dickeya zeae Ech1591 8117340 YP_003004188.1 CDS Dd1591_1858 NC_012912.1 2125975 2126196 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: ses:SARI_01418 hypothetical protein; prevent-host-death family protein 2125975..2126196 Dickeya zeae Ech1591 8117341 YP_003004189.1 CDS Dd1591_1859 NC_012912.1 2126193 2126570 D TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: ses:SARI_01417 hypothetical protein; death-on-curing family protein 2126193..2126570 Dickeya zeae Ech1591 8117342 YP_003004190.1 CDS Dd1591_1861 NC_012912.1 2126974 2127621 D KEGG: vpa:VP1851 hypothetical protein; hypothetical protein 2126974..2127621 Dickeya zeae Ech1591 8117344 YP_003004191.1 CDS Dd1591_1862 NC_012912.1 2127731 2128762 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(2127731..2128762) Dickeya zeae Ech1591 8117345 YP_003004192.1 CDS Dd1591_1863 NC_012912.1 2128790 2129767 R PFAM: Domain of unknown function DUF1852; KEGG: spe:Spro_3175 hypothetical protein; hypothetical protein complement(2128790..2129767) Dickeya zeae Ech1591 8117346 YP_003004193.1 CDS Dd1591_1864 NC_012912.1 2130225 2130455 R PFAM: 4-oxalocrotonate tautomerase; KEGG: esa:ESA_01873 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase complement(2130225..2130455) Dickeya zeae Ech1591 8119341 YP_003004194.1 CDS Dd1591_1865 NC_012912.1 2130632 2131726 R KEGG: eca:ECA2051 putitive ABC-transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(2130632..2131726) Dickeya zeae Ech1591 8119342 YP_003004195.1 CDS Dd1591_1866 NC_012912.1 2132106 2133593 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: eca:ECA2052 GntR family transcriptional regulator; GntR family transcriptional regulator complement(2132106..2133593) Dickeya zeae Ech1591 8119343 YP_003004196.1 CDS Dd1591_1867 NC_012912.1 2133719 2134984 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2133719..2134984 Dickeya zeae Ech1591 8119344 YP_003004197.1 CDS Dd1591_1868 NC_012912.1 2135006 2136466 D KEGG: eca:ECA2054 succinate-semialdehyde dehydrogenase [NADP+]; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; succinic semialdehyde dehydrogenase 2135006..2136466 Dickeya zeae Ech1591 8119345 YP_003004198.1 CDS Dd1591_1869 NC_012912.1 2136784 2137815 D PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA2055 putative transport system, periplasmic solute-binding protein; extracellular solute-binding protein family 1 2136784..2137815 Dickeya zeae Ech1591 8119346 YP_003004199.1 CDS Dd1591_1870 NC_012912.1 2137852 2139123 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2056 putative transport system, permease protein; binding-protein-dependent transport systems inner membrane component 2137852..2139123 Dickeya zeae Ech1591 8119347 YP_003004200.1 CDS Dd1591_1871 NC_012912.1 2139139 2139975 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2057 putative transport system, permease protein; binding-protein-dependent transport systems inner membrane component 2139139..2139975 Dickeya zeae Ech1591 8119348 YP_003004201.1 CDS Dd1591_1872 NC_012912.1 2140058 2140951 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: spe:Spro_3091 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2140058..2140951) Dickeya zeae Ech1591 8119349 YP_003004202.1 CDS Dd1591_1873 NC_012912.1 2141050 2141652 D PFAM: Glutathione S-transferase domain; KEGG: spe:Spro_3092 glutathione S-transferase domain-containing protein; Glutathione S-transferase domain-containing protein 2141050..2141652 Dickeya zeae Ech1591 8119350 YP_003004203.1 CDS Dd1591_1874 NC_012912.1 2141652 2142506 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: spe:Spro_3093 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-related FMN-binding 2141652..2142506 Dickeya zeae Ech1591 8119351 YP_003004204.1 CDS Dd1591_1875 NC_012912.1 2142551 2143330 R PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: eca:ECA1907 DeoR family transcriptional regulator; DeoR family transcriptional regulator complement(2142551..2143330) Dickeya zeae Ech1591 8119352 YP_003004205.1 CDS Dd1591_1876 NC_012912.1 2143445 2144236 D TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: eca:ECA2167 putative inositol monophosphatase; histidinol-phosphate phosphatase 2143445..2144236 Dickeya zeae Ech1591 8119353 YP_003004206.1 CDS Dd1591_1877 NC_012912.1 2144325 2145503 D PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl01_3782 major facilitator transporter; major facilitator superfamily protein 2144325..2145503 Dickeya zeae Ech1591 8119354 YP_003004207.1 CDS Dd1591_1878 NC_012912.1 2145516 2146328 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: eca:ECA1906 putative hydrolase; HAD-superfamily hydrolase 2145516..2146328 Dickeya zeae Ech1591 8119355 YP_003004208.1 CDS Dd1591_1879 NC_012912.1 2146796 2148781 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ypg:YpAngola_A3774 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2146796..2148781) Dickeya zeae Ech1591 8119356 YP_003004209.1 CDS Dd1591_1880 NC_012912.1 2149356 2150585 R in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transport protein complement(2149356..2150585) Dickeya zeae Ech1591 8119357 YP_003004210.1 CDS Dd1591_1881 NC_012912.1 2150777 2150929 D hypothetical protein 2150777..2150929 Dickeya zeae Ech1591 8119358 YP_003004211.1 CDS Dd1591_1882 NC_012912.1 2151273 2152358 R TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; KEGG: eca:ECA2076 type III secretion protein; YscU/HrpY family type III secretion protein complement(2151273..2152358) Dickeya zeae Ech1591 8119359 YP_003004212.1 CDS Dd1591_1883 NC_012912.1 2152403 2153206 R TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: eca:ECA2077 type III secretion protein; type III secretion protein SpaR/YscT/HrcT complement(2152403..2153206) Dickeya zeae Ech1591 8119360 YP_003004213.1 CDS Dd1591_1884 NC_012912.1 2153214 2153474 R TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: eta:ETA_05140 HrcS protein (hrp cluster); HrpO family type III secretion protein complement(2153214..2153474) Dickeya zeae Ech1591 8119361 YP_003004214.1 CDS Dd1591_1885 NC_012912.1 2153482 2154135 R part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein complement(2153482..2154135) Dickeya zeae Ech1591 8119362 YP_003004215.1 CDS Dd1591_1886 NC_012912.1 2154132 2155295 R TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: eca:ECA2080 type III secretion protein; type III secretion system apparatus protein YscQ/HrcQ complement(2154132..2155295) Dickeya zeae Ech1591 8119363 YP_003004216.1 CDS Dd1591_1887 NC_012912.1 2155292 2155822 R KEGG: eca:ECA2081 type III secretion protein; hypothetical protein complement(2155292..2155822) Dickeya zeae Ech1591 8119364 YP_003004217.1 CDS Dd1591_1888 NC_012912.1 2155819 2156298 R KEGG: eca:ECA2082 type III secretion protein; type III secretion protein complement(2155819..2156298) Dickeya zeae Ech1591 8119365 YP_003004218.1 CDS Dd1591_1889 NC_012912.1 2156285 2157664 R KEGG: eca:ECA2083 type III secretion protein; TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; type III secretion apparatus H+-transporting two-sector ATPase complement(2156285..2157664) Dickeya zeae Ech1591 8119366 YP_003004219.1 CDS Dd1591_1890 NC_012912.1 2157664 2158635 R TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; PFAM: Forkhead-associated protein; KEGG: eca:ECA2084 type III secretion protein; YscD/HrpQ family type III secretion apparatus protein complement(2157664..2158635) Dickeya zeae Ech1591 8119367 YP_003004220.1 CDS Dd1591_1891 NC_012912.1 2158646 2160748 R TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: eca:ECA2085 type III secretion protein; HrcV family type III secretion protein complement(2158646..2160748) Dickeya zeae Ech1591 8119368 YP_003004221.1 CDS Dd1591_1892 NC_012912.1 2160752 2161933 R TIGRFAM: type III secretion regulator YopN/LcrE/InvE/MxiC; type III secretion effector delivery regulator, TyeA family; PFAM: Hypersensitivity response secretion HrpJ domain protein; KEGG: eca:ECA2086 type III secretion protein; type III secretion regulator YopN/LcrE/InvE/MxiC complement(2160752..2161933) Dickeya zeae Ech1591 8119369 YP_003004222.1 CDS Dd1591_1893 NC_012912.1 2162256 2162810 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: eca:ECA2087 sigma factor; RNA polymerase, sigma-24 subunit, ECF subfamily 2162256..2162810 Dickeya zeae Ech1591 8119370 YP_003004223.1 CDS Dd1591_1894 NC_012912.1 2162896 2164536 D KEGG: eca:ECA2088 two-component sensor kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation and phosphoacceptor region; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 2162896..2164536 Dickeya zeae Ech1591 8119371 YP_003004224.1 CDS Dd1591_1895 NC_012912.1 2164569 2165210 D PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: eca:ECA2089 two-component response regulator; LuxR family two component transcriptional regulator 2164569..2165210 Dickeya zeae Ech1591 8119372 YP_003004225.1 CDS Dd1591_1896 NC_012912.1 2165584 2166561 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: eca:ECA2090 sigma-54-dependent enhancer-binding protein; sigma54 specific transcriptional regulator, Fis family 2165584..2166561 Dickeya zeae Ech1591 8119373 YP_003004226.1 CDS Dd1591_1897 NC_012912.1 2166731 2166934 D KEGG: eca:ECA2093 type III secretion protein; type III secretion protein 2166731..2166934 Dickeya zeae Ech1591 8119374 YP_003004227.1 CDS Dd1591_1898 NC_012912.1 2167017 2167385 D TIGRFAM: type III secretion apparatus protein, YscI/HrpB family; KEGG: eca:ECA2094 type III secretion protein; YscI/HrpB family type III secretion apparatus protein 2167017..2167385 Dickeya zeae Ech1591 8119375 YP_003004228.1 CDS Dd1591_1899 NC_012912.1 2167465 2168250 D TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: eca:ECA2095 type III secretion protein; type III secretion apparatus lipoprotein, YscJ/HrcJ family 2167465..2168250 Dickeya zeae Ech1591 8119376 YP_003004229.1 CDS Dd1591_1900 NC_012912.1 2168253 2168816 D KEGG: eca:ECA2096 type III secretion protein; type III secretion protein 2168253..2168816 Dickeya zeae Ech1591 8119377 YP_003004230.1 CDS Dd1591_1901 NC_012912.1 2168922 2169524 D TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: HrpE family protein; KEGG: eca:ECA2097 type III secretion protein; HrpE/YscL family type III secretion apparatus protein 2168922..2169524 Dickeya zeae Ech1591 8119378 YP_003004231.1 CDS Dd1591_1902 NC_012912.1 2169768 2171075 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pap:PSPA7_1115 putative lipoprotein; lytic murein transglycosylase 2169768..2171075 Dickeya zeae Ech1591 8119379 YP_003004232.1 CDS Dd1591_1903 NC_012912.1 2171085 2172245 R KEGG: hch:HCH_03110 alpha/beta fold family hydrolase; hypothetical protein complement(2171085..2172245) Dickeya zeae Ech1591 8119380 YP_003004233.1 CDS Dd1591_1904 NC_012912.1 2172688 2173737 D hypothetical protein 2172688..2173737 Dickeya zeae Ech1591 8119381 YP_003004234.1 CDS Dd1591_1905 NC_012912.1 2173969 2174196 D PFAM: HrpF family protein; KEGG: eca:ECA2098 type III secretion protein; HrpF family protein 2173969..2174196 Dickeya zeae Ech1591 8119382 YP_003004235.1 CDS Dd1591_1906 NC_012912.1 2174183 2174617 D KEGG: eca:ECA2099 type III secretion protein; type III secretion protein 2174183..2174617 Dickeya zeae Ech1591 8119383 YP_003004236.1 CDS Dd1591_1907 NC_012912.1 2174610 2176685 D TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: eca:ECA2100 type III secretion protein; type III secretion outer membrane pore, YscC/HrcC family 2174610..2176685 Dickeya zeae Ech1591 8119384 YP_003004237.1 CDS Dd1591_1908 NC_012912.1 2176720 2176905 D KEGG: eca:ECA2101 type III secretion lipoprotein; type III secretion lipoprotein 2176720..2176905 Dickeya zeae Ech1591 8119385 YP_003004238.1 CDS Dd1591_1909 NC_012912.1 2176902 2177312 D KEGG: eta:ETA_05360 HrpV protein (hrp cluster); hypothetical protein 2176902..2177312 Dickeya zeae Ech1591 8119386 YP_003004239.1 CDS Dd1591_1910 NC_012912.1 2177472 2178488 D PFAM: Harpin family protein; KEGG: eca:ECA2103 harpin; Harpin family protein 2177472..2178488 Dickeya zeae Ech1591 8119387 YP_003004240.1 CDS Dd1591_1911 NC_012912.1 2178575 2178970 R PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: hch:HCH_03272 mannose-6-phosphate isomerase; Cupin 2 barrel domain-containing protein complement(2178575..2178970) Dickeya zeae Ech1591 8119388 YP_003004241.1 CDS Dd1591_1912 NC_012912.1 2179295 2180971 D PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: eca:ECA2116 putative hemolysin activator protein; Polypeptide-transport-associated domain-containing protein ShlB-type 2179295..2180971 Dickeya zeae Ech1591 8119389 YP_003004242.1 CDS Dd1591_1913 NC_012912.1 2181079 2192451 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; protein of unknown function DUF638 hemagglutinin/hemolysin putative; KEGG: ent:Ent638_0053 filamentous haemagglutinin outer membrane protein; filamentous hemagglutinin family outer membrane protein 2181079..2192451 Dickeya zeae Ech1591 8119390 YP_003004243.1 CDS Dd1591_1914 NC_012912.1 2192441 2193055 D hypothetical protein 2192441..2193055 Dickeya zeae Ech1591 8119391 YP_003004244.1 CDS Dd1591_1915 NC_012912.1 2193384 2193671 R PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: plu:plu3380 hypothetical protein; hypothetical protein complement(2193384..2193671) Dickeya zeae Ech1591 8119392 YP_003004245.1 CDS Dd1591_1916 NC_012912.1 2193746 2194132 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: eca:ECA3417 putative phage regulatory protein; XRE family transcriptional regulator complement(2193746..2194132) Dickeya zeae Ech1591 8119393 YP_003004246.1 CDS Dd1591_1917 NC_012912.1 2194248 2197502 D PFAM: zinc finger CHC2-family protein; DNA primase catalytic core domain; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; KEGG: plu:plu3714 hypothetical protein; zinc finger CHC2-family protein 2194248..2197502 Dickeya zeae Ech1591 8119394 YP_003004247.1 CDS xerC NC_012912.1 2197495 2198604 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 2197495..2198604 Dickeya zeae Ech1591 8119395 YP_003004248.1 CDS Dd1591_1919 NC_012912.1 2199507 2200337 D KEGG: ypi:YpsIP31758_0519 hypothetical protein; hypothetical protein 2199507..2200337 Dickeya zeae Ech1591 8119396 YP_003004249.1 CDS Dd1591_1920 NC_012912.1 2200343 2200723 D KEGG: pap:PSPA7_0046 hypothetical protein; hypothetical protein 2200343..2200723 Dickeya zeae Ech1591 8119397 YP_003004250.1 CDS Dd1591_1921 NC_012912.1 2200968 2201255 R PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: plu:plu3380 hypothetical protein; hypothetical protein complement(2200968..2201255) Dickeya zeae Ech1591 8119398 YP_003004251.1 CDS Dd1591_1922 NC_012912.1 2201330 2201716 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: eca:ECA3417 putative phage regulatory protein; XRE family transcriptional regulator complement(2201330..2201716) Dickeya zeae Ech1591 8119399 YP_003004252.1 CDS Dd1591_1923 NC_012912.1 2201832 2205188 D PFAM: zinc finger CHC2-family protein; DNA primase catalytic core domain; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; KEGG: plu:plu3714 hypothetical protein; zinc finger CHC2-family protein 2201832..2205188 Dickeya zeae Ech1591 8119400 YP_003004253.1 CDS xerC NC_012912.1 2205181 2206290 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 2205181..2206290 Dickeya zeae Ech1591 8119401 YP_003004254.1 CDS Dd1591_1925 NC_012912.1 2207193 2208227 D KEGG: eta:ETA_19590 hypothetical protein; hypothetical protein 2207193..2208227 Dickeya zeae Ech1591 8119402 YP_003004255.1 CDS Dd1591_1926 NC_012912.1 2208239 2208604 D KEGG: plu:plu0222 hypothetical protein; hypothetical protein 2208239..2208604 Dickeya zeae Ech1591 8119403 YP_003004256.1 CDS Dd1591_1927 NC_012912.1 2208847 2209059 R PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: plu:plu3380 hypothetical protein; hypothetical protein complement(2208847..2209059) Dickeya zeae Ech1591 8119404 YP_003004257.1 CDS Dd1591_1929 NC_012912.1 2209536 2209799 D TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: ecm:EcSMS35_3216 putative addiction module antidote protein, CC2985 family; putative CopG/Arc/MetJ family addiction module antidote protein 2209536..2209799 Dickeya zeae Ech1591 8119406 YP_003004258.1 CDS Dd1591_1930 NC_012912.1 2209796 2210107 D PFAM: plasmid stabilization system; KEGG: rso:RSc3224 hypothetical protein; plasmid stabilization system protein 2209796..2210107 Dickeya zeae Ech1591 8119407 YP_003004259.1 CDS Dd1591_1931 NC_012912.1 2210552 2210791 D PFAM: FeoA family protein; KEGG: rru:Rru_A2468 hypothetical protein; FeoA family protein 2210552..2210791 Dickeya zeae Ech1591 8119408 YP_003004260.1 CDS Dd1591_1932 NC_012912.1 2210901 2211128 D PFAM: FeoA family protein; KEGG: rru:Rru_A2469 hypothetical protein; FeoA family protein 2210901..2211128 Dickeya zeae Ech1591 8119409 YP_003004261.1 CDS Dd1591_1933 NC_012912.1 2211151 2213475 D TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: rru:Rru_A2470 ferrous iron transport protein B; ferrous iron transport protein B 2211151..2213475 Dickeya zeae Ech1591 8119410 YP_003004262.1 CDS Dd1591_1934 NC_012912.1 2213513 2213734 D PFAM: Protein of unknown function DUF1920; KEGG: rru:Rru_A2471 hypothetical protein; hypothetical protein 2213513..2213734 Dickeya zeae Ech1591 8119411 YP_003004263.1 CDS Dd1591_1935 NC_012912.1 2213841 2213951 R hypothetical protein complement(2213841..2213951) Dickeya zeae Ech1591 8119412 YP_003004264.1 CDS Dd1591_1936 NC_012912.1 2213997 2215268 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 2213997..2215268 Dickeya zeae Ech1591 8119413 YP_003004265.1 CDS Dd1591_1937 NC_012912.1 2215405 2216526 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: eca:ECA2447 hypothetical protein; Cupin 4 family protein complement(2215405..2216526) Dickeya zeae Ech1591 8119414 YP_003004266.1 CDS Dd1591_1938 NC_012912.1 2216749 2218200 R PFAM: PhoQ Sensor domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: eca:ECA2446 sensor protein PhoQ; sensor protein PhoQ complement(2216749..2218200) Dickeya zeae Ech1591 8119415 YP_003004267.1 CDS Dd1591_1939 NC_012912.1 2218256 2218924 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP complement(2218256..2218924) Dickeya zeae Ech1591 8119416 YP_003004268.1 CDS Dd1591_1940 NC_012912.1 2219237 2220604 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2219237..2220604) Dickeya zeae Ech1591 8119417 YP_003004269.1 CDS Dd1591_1941 NC_012912.1 2220808 2221440 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2220808..2221440) Dickeya zeae Ech1591 8119418 YP_003004270.1 CDS mnmA NC_012912.1 2221825 2222943 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2221825..2222943) Dickeya zeae Ech1591 8119419 YP_003004271.1 CDS Dd1591_1943 NC_012912.1 2223117 2223575 R PFAM: NUDIX hydrolase; KEGG: eca:ECA2441 putative MutT family protein; NUDIX hydrolase complement(2223117..2223575) Dickeya zeae Ech1591 8119420 YP_003004272.1 CDS Dd1591_1944 NC_012912.1 2223568 2224224 R PFAM: pseudouridine synthase; KEGG: eca:ECA2440 putative RNA pseudouridylate synthase; pseudouridine synthase complement(2223568..2224224) Dickeya zeae Ech1591 8119261 YP_003004273.1 CDS Dd1591_1945 NC_012912.1 2224326 2225579 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2224326..2225579 Dickeya zeae Ech1591 8119262 YP_003004274.1 CDS Dd1591_1946 NC_012912.1 2226407 2228575 D KEGG: eca:ECA2433 putative signaling protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS domain containing protein; PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase 2226407..2228575 Dickeya zeae Ech1591 8119263 YP_003004275.1 CDS Dd1591_1947 NC_012912.1 2229038 2229922 D PFAM: HtpX domain protein; peptidase M48 Ste24p; KEGG: eca:ECA2427 heat shock protein HtpX; HtpX domain-containing protein 2229038..2229922 Dickeya zeae Ech1591 8119264 YP_003004276.1 CDS Dd1591_1948 NC_012912.1 2230206 2231372 D KEGG: eca:ECA2426 oligogalacturonate lyase; oligogalacturonide lyase 2230206..2231372 Dickeya zeae Ech1591 8119265 YP_003004277.1 CDS Dd1591_1949 NC_012912.1 2231585 2232376 D PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: eca:ECA2425 pectin degradation repressor; IclR family transcriptional regulator 2231585..2232376 Dickeya zeae Ech1591 8119266 YP_003004278.1 CDS Dd1591_1950 NC_012912.1 2232544 2232834 D KEGG: eca:ECA2424 hypothetical protein; hypothetical protein 2232544..2232834 Dickeya zeae Ech1591 8119267 YP_003004279.1 CDS Dd1591_1951 NC_012912.1 2233155 2235083 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2233155..2235083 Dickeya zeae Ech1591 8119268 YP_003004280.1 CDS infC NC_012912.1 2235087 2235629 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2235087..2235629 Dickeya zeae Ech1591 8119269 YP_003004281.1 CDS rpmI NC_012912.1 2235725 2235922 D TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: eta:ETA_18390 50S ribosomal protein L35; 50S ribosomal protein L35 2235725..2235922 Dickeya zeae Ech1591 8119270 YP_003004282.1 CDS Dd1591_1954 NC_012912.1 2235965 2236321 D TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: eca:ECA2419 50S ribosomal protein L20; 50S ribosomal protein L20 2235965..2236321 Dickeya zeae Ech1591 8119271 YP_003004283.1 CDS pheS NC_012912.1 2236712 2237695 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2236712..2237695 Dickeya zeae Ech1591 8119272 YP_003004284.1 CDS pheT NC_012912.1 2237711 2240098 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2237711..2240098 Dickeya zeae Ech1591 8119273 YP_003004285.1 CDS ihfA NC_012912.1 2240102 2240401 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2240102..2240401 Dickeya zeae Ech1591 8119274 YP_003004286.1 CDS Dd1591_1958 NC_012912.1 2240420 2240821 R KEGG: pmr:PMI1959 hypothetical protein; hypothetical protein complement(2240420..2240821) Dickeya zeae Ech1591 8119275 YP_003004287.1 CDS Dd1591_1959 NC_012912.1 2240903 2241796 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA2413 hypothetical protein; hypothetical protein complement(2240903..2241796) Dickeya zeae Ech1591 8119276 YP_003004288.1 CDS nadE NC_012912.1 2241886 2242710 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(2241886..2242710) Dickeya zeae Ech1591 8119277 YP_003004289.1 CDS Dd1591_1961 NC_012912.1 2242935 2243264 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 2242935..2243264 Dickeya zeae Ech1591 8119278 YP_003004290.1 CDS Dd1591_1962 NC_012912.1 2243325 2244716 R PFAM: sodium:dicarboxylate symporter; KEGG: eca:ECA2410 putative sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(2243325..2244716) Dickeya zeae Ech1591 8119279 YP_003004291.1 CDS Dd1591_1963 NC_012912.1 2244859 2245437 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: eca:ECA2409 hypothetical protein; hypothetical protein complement(2244859..2245437) Dickeya zeae Ech1591 8119280 YP_003004292.1 CDS Dd1591_1964 NC_012912.1 2245522 2246448 R KEGG: eca:ECA2408 pectin acetylesterase; pectin acetylesterase complement(2245522..2246448) Dickeya zeae Ech1591 8119281 YP_003004293.1 CDS Dd1591_1965 NC_012912.1 2246785 2247504 R PFAM: Oligogalacturonate-specific porin; KEGG: eca:ECA2407 oligogalacturonate-specific porin; oligogalacturonate-specific porin complement(2246785..2247504) Dickeya zeae Ech1591 8119282 YP_003004294.1 CDS Dd1591_1966 NC_012912.1 2247754 2249046 R PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA2406 periplasmic pectic oligomers binding protein; extracellular solute-binding protein family 1 complement(2247754..2249046) Dickeya zeae Ech1591 8119283 YP_003004295.1 CDS Dd1591_1967 NC_012912.1 2249061 2250188 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: eca:ECA2405 ABC transporter, ATP-binding component; ABC transporter complement(2249061..2250188) Dickeya zeae Ech1591 8119284 YP_003004296.1 CDS Dd1591_1968 NC_012912.1 2250202 2251104 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ent:Ent638_3290 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2250202..2251104) Dickeya zeae Ech1591 8119285 YP_003004297.1 CDS Dd1591_1969 NC_012912.1 2251097 2251987 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2251097..2251987) Dickeya zeae Ech1591 8119286 YP_003004298.1 CDS Dd1591_1970 NC_012912.1 2252032 2253663 R PFAM: periplasmic pectate lyase; KEGG: eca:ECA2402 pectate disaccharide-lyase; pectate disaccharide-lyase complement(2252032..2253663) Dickeya zeae Ech1591 8119287 YP_003004299.1 CDS Dd1591_1971 NC_012912.1 2253925 2254686 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(2253925..2254686) Dickeya zeae Ech1591 8119288 YP_003004300.1 CDS Dd1591_1972 NC_012912.1 2254855 2255691 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase complement(2254855..2255691) Dickeya zeae Ech1591 8119289 YP_003004301.1 CDS Dd1591_1973 NC_012912.1 2256013 2256345 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: eca:ECA2399 pectin degradation protein; Cupin 2 barrel domain-containing protein 2256013..2256345 Dickeya zeae Ech1591 8119290 YP_003004302.1 CDS Dd1591_1974 NC_012912.1 2256578 2257126 D KEGG: eca:ECA2397 hypothetical protein; hypothetical protein 2256578..2257126 Dickeya zeae Ech1591 8119291 YP_003004303.1 CDS Dd1591_1975 NC_012912.1 2257175 2258032 R PFAM: fructosamine kinase; aminoglycoside phosphotransferase; KEGG: eca:ECA2396 putative fructosamine kinase; fructosamine kinase complement(2257175..2258032) Dickeya zeae Ech1591 8119292 YP_003004304.1 CDS Dd1591_1976 NC_012912.1 2258611 2259804 D PFAM: transposase IS4 family protein; KEGG: sfx:S4808 hypothetical protein; transposase IS4 family protein 2258611..2259804 Dickeya zeae Ech1591 8119293 YP_003004305.1 CDS Dd1591_1977 NC_012912.1 2260879 2261088 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: eca:ECA2391 cold shock-like protein CspC; cold shock-like protein CspC 2260879..2261088 Dickeya zeae Ech1591 8119294 YP_003004306.1 CDS Dd1591_1978 NC_012912.1 2261170 2261982 D PFAM: Methyltransferase type 11; KEGG: eca:ECA2390 23S rRNA methyltransferase A; rRNA (guanine-N(1)-)-methyltransferase 2261170..2261982 Dickeya zeae Ech1591 8119295 YP_003004307.1 CDS Dd1591_1979 NC_012912.1 2262226 2262798 R PFAM: protein of unknown function DUF204; KEGG: eca:ECA2389 hypothetical protein; hypothetical protein complement(2262226..2262798) Dickeya zeae Ech1591 8119296 YP_003004308.1 CDS Dd1591_1980 NC_012912.1 2263185 2263643 R PFAM: protein of unknown function DUF986; KEGG: ypi:YpsIP31758_2371 hypothetical protein; hypothetical protein complement(2263185..2263643) Dickeya zeae Ech1591 8119297 YP_003004309.1 CDS Dd1591_1981 NC_012912.1 2263754 2264590 R hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID complement(2263754..2264590) Dickeya zeae Ech1591 8119298 YP_003004310.1 CDS Dd1591_1982 NC_012912.1 2264605 2265402 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: eca:ECA2386 PTS system, mannose-specific IIC component; PTS system mannose/fructose/sorbose family transporter subunit IIC complement(2264605..2265402) Dickeya zeae Ech1591 8119299 YP_003004311.1 CDS Dd1591_1983 NC_012912.1 2265472 2266428 R KEGG: eca:ECA2385 PTS system, mannose-specific IIAB component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component; PTS system mannose/fructose/sorbose family transporter subunit IIB complement(2265472..2266428) Dickeya zeae Ech1591 8119300 YP_003004312.1 CDS Dd1591_1984 NC_012912.1 2267024 2268577 D PFAM: Integral membrane protein TerC; CBS domain containing protein; transporter-associated region; KEGG: eca:ECA2384 hypothetical protein; Integral membrane protein TerC 2267024..2268577 Dickeya zeae Ech1591 8119301 YP_003004313.1 CDS Dd1591_1985 NC_012912.1 2268781 2270142 R KEGG: eca:ECA2380 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(2268781..2270142) Dickeya zeae Ech1591 8119302 YP_003004314.1 CDS Dd1591_1986 NC_012912.1 2270363 2271016 R PFAM: NUDIX hydrolase; KEGG: eca:ECA2379 hypothetical protein; hypothetical protein complement(2270363..2271016) Dickeya zeae Ech1591 8119303 YP_003004315.1 CDS Dd1591_1987 NC_012912.1 2271032 2272402 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; KEGG: yen:YE1781 para-aminobenzoate synthase component I; para-aminobenzoate synthase subunit I complement(2271032..2272402) Dickeya zeae Ech1591 8119304 YP_003004316.1 CDS Dd1591_1988 NC_012912.1 2272556 2272744 D PFAM: protein of unknown function UPF0181; KEGG: eum:ECUMN_2103 hypothetical protein; hypothetical protein 2272556..2272744 Dickeya zeae Ech1591 8119305 YP_003004317.1 CDS Dd1591_1989 NC_012912.1 2272784 2273131 R PFAM: Endoribonuclease L-PSP; KEGG: eca:ECA2376 putative endoribonuclease; Endoribonuclease L-PSP complement(2272784..2273131) Dickeya zeae Ech1591 8119306 YP_003004318.1 CDS Dd1591_1990 NC_012912.1 2273306 2275255 D SMART: helicase c2; DEAD-like helicase; KEGG: eca:ECA2375 putative ATP-dependent helicase; helicase c2 2273306..2275255 Dickeya zeae Ech1591 8119307 YP_003004319.1 CDS Dd1591_1991 NC_012912.1 2275321 2276022 D PFAM: peptidase M22 glycoprotease; KEGG: eca:ECA2374 hypothetical protein; peptidase M22 glycoprotease 2275321..2276022 Dickeya zeae Ech1591 8119308 YP_003004320.1 CDS Dd1591_1992 NC_012912.1 2276366 2276995 D TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: eca:ECA2373 outer membrane lipoprotein; outer membrane lipoprotein, Slp family 2276366..2276995 Dickeya zeae Ech1591 8119309 YP_003004321.1 CDS Dd1591_1993 NC_012912.1 2277180 2278883 D PFAM: AMP-dependent synthetase and ligase; KEGG: eca:ECA2372 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2277180..2278883 Dickeya zeae Ech1591 8119310 YP_003004322.1 CDS Dd1591_1994 NC_012912.1 2279075 2280196 D KEGG: eca:ECA2371 ribonuclease D; TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; ribonuclease D 2279075..2280196 Dickeya zeae Ech1591 8119311 YP_003004323.1 CDS minE NC_012912.1 2280260 2280553 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(2280260..2280553) Dickeya zeae Ech1591 8119312 YP_003004324.1 CDS Dd1591_1996 NC_012912.1 2280557 2281369 R ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD complement(2280557..2281369) Dickeya zeae Ech1591 8119313 YP_003004325.1 CDS minC NC_012912.1 2281390 2282088 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2281390..2282088) Dickeya zeae Ech1591 8119314 YP_003004326.1 CDS Dd1591_1998 NC_012912.1 2282225 2282497 D PFAM: protein of unknown function DUF709; KEGG: elf:LF82_2733 uncharacterized protein ycgl; hypothetical protein 2282225..2282497 Dickeya zeae Ech1591 8119315 YP_003004327.1 CDS Dd1591_1999 NC_012912.1 2282880 2283536 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eca:ECA2366 hypothetical protein; hypothetical protein 2282880..2283536 Dickeya zeae Ech1591 8119316 YP_003004328.1 CDS Dd1591_2000 NC_012912.1 2283636 2284082 D PFAM: protein of unknown function UPF0153; KEGG: eca:ECA2365 hypothetical protein; hypothetical protein 2283636..2284082 Dickeya zeae Ech1591 8119317 YP_003004329.1 CDS Dd1591_2001 NC_012912.1 2284238 2284768 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(2284238..2284768) Dickeya zeae Ech1591 8119318 YP_003004330.1 CDS Dd1591_2003 NC_012912.1 2285778 2286497 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2285778..2286497 Dickeya zeae Ech1591 8119320 YP_003004331.1 CDS Dd1591_2004 NC_012912.1 2286573 2288108 R PFAM: SpoVR family protein; KEGG: eca:ECA2359 hypothetical protein; SpoVR family protein complement(2286573..2288108) Dickeya zeae Ech1591 8119321 YP_003004332.1 CDS Dd1591_2005 NC_012912.1 2288432 2289682 D catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 2288432..2289682 Dickeya zeae Ech1591 8119322 YP_003004333.1 CDS Dd1591_2007 NC_012912.1 2290080 2291288 D PFAM: transposase mutator type; KEGG: yps:YPTB3311 putative transposase; transposase mutator type 2290080..2291288 Dickeya zeae Ech1591 8119324 YP_003004334.1 CDS Dd1591_2008 NC_012912.1 2291630 2303020 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; protein of unknown function DUF638 hemagglutinin/hemolysin putative; KEGG: ent:Ent638_0053 filamentous haemagglutinin outer membrane protein; filamentous hemagglutinin family outer membrane protein 2291630..2303020 Dickeya zeae Ech1591 8119325 YP_003004335.1 CDS Dd1591_2009 NC_012912.1 2303017 2303322 D KEGG: plu:plu1122 hypothetical protein; hypothetical protein 2303017..2303322 Dickeya zeae Ech1591 8119326 YP_003004336.1 CDS Dd1591_2010 NC_012912.1 2303578 2303790 R PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: plu:plu3380 hypothetical protein; hypothetical protein complement(2303578..2303790) Dickeya zeae Ech1591 8119327 YP_003004337.1 CDS Dd1591_2012 NC_012912.1 2304267 2304530 D TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: ecm:EcSMS35_3216 putative addiction module antidote protein, CC2985 family; putative CopG/Arc/MetJ family addiction module antidote protein 2304267..2304530 Dickeya zeae Ech1591 8119329 YP_003004338.1 CDS Dd1591_2013 NC_012912.1 2304614 2305735 R PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA2134 ABC transporter, substrate binding protein; extracellular solute-binding protein family 1 complement(2304614..2305735) Dickeya zeae Ech1591 8119330 YP_003004339.1 CDS Dd1591_2014 NC_012912.1 2306136 2306720 R KEGG: hypothetical protein LOC100013487; hypothetical protein complement(2306136..2306720) Dickeya zeae Ech1591 8119331 YP_003004340.1 CDS Dd1591_2015 NC_012912.1 2306875 2308068 R PFAM: transposase IS4 family protein; KEGG: sfx:S4808 hypothetical protein; transposase IS4 family protein complement(2306875..2308068) Dickeya zeae Ech1591 8119332 YP_003004341.1 CDS Dd1591_2016 NC_012912.1 2308505 2308684 R KEGG: eca:ECA2139 hypothetical protein; hypothetical protein complement(2308505..2308684) Dickeya zeae Ech1591 8119333 YP_003004342.1 CDS Dd1591_2017 NC_012912.1 2308747 2310591 D KEGG: pst:PSPTO_1405 type III helper protein HrpK1; hypothetical protein 2308747..2310591 Dickeya zeae Ech1591 8119334 YP_003004343.1 CDS Dd1591_2018 NC_012912.1 2310679 2311353 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: yen:YE3176 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2310679..2311353) Dickeya zeae Ech1591 8119335 YP_003004344.1 CDS Dd1591_2019 NC_012912.1 2311539 2311871 R KEGG: eca:ECA2111 potential HrpW-specific chaperone; HrpW-specific chaperone complement(2311539..2311871) Dickeya zeae Ech1591 8119336 YP_003004345.1 CDS Dd1591_2020 NC_012912.1 2311885 2313609 R PFAM: Pectate lyase; KEGG: eca:ECA2112 type III effector protein; pectate lyase complement(2311885..2313609) Dickeya zeae Ech1591 8119337 YP_003004346.1 CDS Dd1591_2021 NC_012912.1 2313744 2314760 R KEGG: eca:ECA2112 type III effector protein; type III effector protein complement(2313744..2314760) Dickeya zeae Ech1591 8119338 YP_003004347.1 CDS Dd1591_2022 NC_012912.1 2314998 2319902 D KEGG: eca:ECA2113 putative avirulence protein; putative avirulence protein 2314998..2319902 Dickeya zeae Ech1591 8119339 YP_003004348.1 CDS Dd1591_2023 NC_012912.1 2319968 2320390 D PFAM: DspFAvrF family protein; Tir chaperone family protein; KEGG: eca:ECA2114 putative avirulence protein; DspFAvrF family protein 2319968..2320390 Dickeya zeae Ech1591 8119340 YP_003004349.1 CDS Dd1591_2024 NC_012912.1 2320636 2324124 D KEGG: pae:PA4285 exodeoxyribonuclease V gamma chain; TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; exodeoxyribonuclease V subunit gamma 2320636..2324124 Dickeya zeae Ech1591 8119501 YP_003004350.1 CDS Dd1591_2025 NC_012912.1 2324121 2327795 D KEGG: pen:PSEEN0692 exonuclease V, beta subunit; TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; exodeoxyribonuclease V subunit beta 2324121..2327795 Dickeya zeae Ech1591 8119502 YP_003004351.1 CDS Dd1591_2026 NC_012912.1 2327792 2329837 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: bvi:Bcep1808_6232 DNA helicase/exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 2327792..2329837 Dickeya zeae Ech1591 8119503 YP_003004352.1 CDS Dd1591_2027 NC_012912.1 2330046 2331419 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 2330046..2331419 Dickeya zeae Ech1591 8119504 YP_003004353.1 CDS Dd1591_2028 NC_012912.1 2331538 2332659 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bch:Bcen2424_6908 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase complement(2331538..2332659) Dickeya zeae Ech1591 8119505 YP_003004354.1 CDS Dd1591_2029 NC_012912.1 2332694 2333185 R KEGG: swi:Swit_3359 hypothetical protein; hypothetical protein complement(2332694..2333185) Dickeya zeae Ech1591 8119506 YP_003004355.1 CDS Dd1591_2030 NC_012912.1 2333312 2334229 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: asa:ASA_0430 LysR family transcriptional regulator; LysR family transcriptional regulator 2333312..2334229 Dickeya zeae Ech1591 8119507 YP_003004356.1 CDS Dd1591_2031 NC_012912.1 2334297 2334917 R KEGG: aha:AHA_3221 TPR repeat-containing protein; TPR repeat-containing protein complement(2334297..2334917) Dickeya zeae Ech1591 8119508 YP_003004357.1 CDS Dd1591_2032 NC_012912.1 2334914 2335720 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: asa:ASA_1093 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2334914..2335720) Dickeya zeae Ech1591 8119509 YP_003004358.1 CDS Dd1591_2033 NC_012912.1 2335707 2336372 R KEGG: asa:ASA_1094 hypothetical protein; putative transcriptional activator, TenA family complement(2335707..2336372) Dickeya zeae Ech1591 8119510 YP_003004359.1 CDS Dd1591_2034 NC_012912.1 2336375 2337811 R PFAM: AMP-dependent synthetase and ligase; KEGG: aha:AHA_3218 long-chain acyl-CoA synthetases; AMP-dependent synthetase and ligase complement(2336375..2337811) Dickeya zeae Ech1591 8119511 YP_003004360.1 CDS Dd1591_2035 NC_012912.1 2337792 2338448 R KEGG: aha:AHA_3217 thermostable hemolysin; thermostable hemolysin complement(2337792..2338448) Dickeya zeae Ech1591 8119512 YP_003004361.1 CDS Dd1591_2036 NC_012912.1 2338722 2339762 R PFAM: Haemin-degrading family protein; KEGG: yps:YPTB0339 hemin degradation/transport protein HmuS; Hemin-degrading family protein complement(2338722..2339762) Dickeya zeae Ech1591 8119513 YP_003004362.1 CDS Dd1591_2037 NC_012912.1 2340351 2341034 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: eca:ECA0785 two component system response regulator; winged helix family two component transcriptional regulator 2340351..2341034 Dickeya zeae Ech1591 8119514 YP_003004363.1 CDS Dd1591_2038 NC_012912.1 2341039 2342484 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eca:ECA0786 two component system sensor kinase; histidine kinase 2341039..2342484 Dickeya zeae Ech1591 8119515 YP_003004364.1 CDS Dd1591_2039 NC_012912.1 2343452 2343670 D PFAM: Flp/Fap pilin component; KEGG: mmw:Mmwyl1_0303 Flp/Fap pilin component; Flp/Fap pilin component 2343452..2343670 Dickeya zeae Ech1591 8119516 YP_003004365.1 CDS Dd1591_2040 NC_012912.1 2343670 2344227 D PFAM: peptidase A24A prepilin type IV; KEGG: eca:ECA0787 hypothetical protein; peptidase A24A prepilin type IV 2343670..2344227 Dickeya zeae Ech1591 8119517 YP_003004366.1 CDS Dd1591_2041 NC_012912.1 2344261 2345187 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: eca:ECA0788 hypothetical protein; Flp pilus assembly protein CpaB 2344261..2345187 Dickeya zeae Ech1591 8119518 YP_003004367.1 CDS Dd1591_2042 NC_012912.1 2345256 2346680 D PFAM: type II and III secretion system protein; KEGG: eca:ECA0789 hypothetical protein; type II and III secretion system protein 2345256..2346680 Dickeya zeae Ech1591 8119519 YP_003004368.1 CDS Dd1591_2043 NC_012912.1 2346695 2347366 D TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: eca:ECA0790 putative lipoprotein; pilus biogenesis lipoprotein CpaD 2346695..2347366 Dickeya zeae Ech1591 8119520 YP_003004369.1 CDS Dd1591_2044 NC_012912.1 2347382 2348587 D KEGG: eca:ECA0791 hypothetical protein; response regulator receiver protein 2347382..2348587 Dickeya zeae Ech1591 8119521 YP_003004370.1 CDS Dd1591_2045 NC_012912.1 2348616 2349992 D PFAM: type II secretion system protein E; KEGG: eca:ECA0792 putative type IV pilus protein; type II secretion system protein E 2348616..2349992 Dickeya zeae Ech1591 8119522 YP_003004371.1 CDS Dd1591_2046 NC_012912.1 2350022 2350999 D PFAM: type II secretion system protein; KEGG: eca:ECA0793 putative type IV pilus protein; type II secretion system protein 2350022..2350999 Dickeya zeae Ech1591 8119523 YP_003004372.1 CDS Dd1591_2047 NC_012912.1 2351012 2351968 D PFAM: type II secretion system protein; KEGG: eca:ECA0794 putative type IV pilus protein; type II secretion system protein 2351012..2351968 Dickeya zeae Ech1591 8119524 YP_003004373.1 CDS Dd1591_2048 NC_012912.1 2352033 2352884 D PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: eca:ECA0795 hypothetical protein; hypothetical protein 2352033..2352884 Dickeya zeae Ech1591 8119525 YP_003004374.1 CDS Dd1591_2049 NC_012912.1 2352881 2353396 D KEGG: eca:ECA0796 hypothetical protein; hypothetical protein 2352881..2353396 Dickeya zeae Ech1591 8119526 YP_003004375.1 CDS Dd1591_2050 NC_012912.1 2353389 2354012 D KEGG: eca:ECA0797 hypothetical protein; hypothetical protein 2353389..2354012 Dickeya zeae Ech1591 8119527 YP_003004376.1 CDS Dd1591_2051 NC_012912.1 2354005 2355585 D KEGG: eca:ECA0798 hypothetical protein; hypothetical protein 2354005..2355585 Dickeya zeae Ech1591 8119528 YP_003004377.1 CDS Dd1591_2052 NC_012912.1 2355624 2363144 D PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: eca:ECA0799 putative outer membrane protein; Ig family protein 2355624..2363144 Dickeya zeae Ech1591 8119529 YP_003004378.1 CDS Dd1591_2053 NC_012912.1 2363165 2364982 D KEGG: eca:ECA0800 hypothetical protein; hypothetical protein 2363165..2364982 Dickeya zeae Ech1591 8119530 YP_003004379.1 CDS Dd1591_2054 NC_012912.1 2364979 2365770 D PFAM: secretion protein HlyD family protein; KEGG: eca:ECA0801 hypothetical protein; secretion protein HlyD family protein 2364979..2365770 Dickeya zeae Ech1591 8119531 YP_003004380.1 CDS Dd1591_2055 NC_012912.1 2365760 2367088 D KEGG: eca:ECA0802 hypothetical protein; hypothetical protein 2365760..2367088 Dickeya zeae Ech1591 8119532 YP_003004381.1 CDS Dd1591_2056 NC_012912.1 2367095 2369224 D KEGG: eca:ECA0803 hypothetical protein; hypothetical protein 2367095..2369224 Dickeya zeae Ech1591 8119533 YP_003004382.1 CDS Dd1591_2057 NC_012912.1 2369382 2369957 R PFAM: regulatory protein TetR; KEGG: sbp:Sbal223_2172 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2369382..2369957) Dickeya zeae Ech1591 8119534 YP_003004383.1 CDS Dd1591_2058 NC_012912.1 2370093 2371184 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sbp:Sbal223_2173 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 2370093..2371184 Dickeya zeae Ech1591 8119535 YP_003004384.1 CDS Dd1591_2059 NC_012912.1 2371256 2372038 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbp:Sbal223_2174 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2371256..2372038 Dickeya zeae Ech1591 8119536 YP_003004385.1 CDS Dd1591_2060 NC_012912.1 2372111 2372923 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sbp:Sbal223_2175 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2372111..2372923 Dickeya zeae Ech1591 8119537 YP_003004386.1 CDS Dd1591_2061 NC_012912.1 2372934 2373341 D KEGG: sbp:Sbal223_2176 hypothetical protein; hypothetical protein 2372934..2373341 Dickeya zeae Ech1591 8119538 YP_003004387.1 CDS Dd1591_2062 NC_012912.1 2373338 2374342 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bac:BamMC406_5268 alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 2373338..2374342 Dickeya zeae Ech1591 8119539 YP_003004388.1 CDS Dd1591_2063 NC_012912.1 2374604 2375695 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2374604..2375695) Dickeya zeae Ech1591 8119540 YP_003004389.1 CDS Dd1591_2064 NC_012912.1 2375823 2376410 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(2375823..2376410) Dickeya zeae Ech1591 8119541 YP_003004390.1 CDS Dd1591_2065 NC_012912.1 2376642 2376917 D YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein 2376642..2376917 Dickeya zeae Ech1591 8119542 YP_003004391.1 CDS Dd1591_2066 NC_012912.1 2377112 2378014 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: scl:sce5647 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2377112..2378014) Dickeya zeae Ech1591 8119543 YP_003004392.1 CDS Dd1591_2067 NC_012912.1 2378194 2378979 D PFAM: ThiJ/PfpI domain protein; KEGG: xfm:Xfasm12_0479 NonF-related protein; ThiJ/PfpI domain-containing protein 2378194..2378979 Dickeya zeae Ech1591 8119544 YP_003004393.1 CDS Dd1591_2068 NC_012912.1 2379138 2380085 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(2379138..2380085) Dickeya zeae Ech1591 8119545 YP_003004394.1 CDS Dd1591_2069 NC_012912.1 2380214 2381086 R KEGG: eca:ECA2187 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase complement(2380214..2381086) Dickeya zeae Ech1591 8119546 YP_003004395.1 CDS lolB NC_012912.1 2381090 2381710 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB complement(2381090..2381710) Dickeya zeae Ech1591 8119547 YP_003004396.1 CDS hemA NC_012912.1 2381921 2383177 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 2381921..2383177 Dickeya zeae Ech1591 8119548 YP_003004397.1 CDS prfA NC_012912.1 2383225 2384307 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2383225..2384307 Dickeya zeae Ech1591 8119549 YP_003004398.1 CDS Dd1591_2073 NC_012912.1 2384307 2385158 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: eca:ECA2191 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; modification methylase, HemK family 2384307..2385158 Dickeya zeae Ech1591 8119550 YP_003004399.1 CDS Dd1591_2074 NC_012912.1 2385206 2385382 D hypothetical protein 2385206..2385382 Dickeya zeae Ech1591 8119551 YP_003004400.1 CDS Dd1591_2075 NC_012912.1 2385385 2386194 D KEGG: eca:ECA2193 putative transcriptional regulator; putative transcriptional regulator 2385385..2386194 Dickeya zeae Ech1591 8119552 YP_003004401.1 CDS Dd1591_2076 NC_012912.1 2386251 2387105 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2386251..2387105 Dickeya zeae Ech1591 8119553 YP_003004402.1 CDS Dd1591_2077 NC_012912.1 2387166 2388116 R PFAM: protein of unknown function DUF1471; KEGG: eca:ECA2203 hypothetical protein; hypothetical protein complement(2387166..2388116) Dickeya zeae Ech1591 8119554 YP_003004403.1 CDS pntA NC_012912.1 2388627 2390156 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 2388627..2390156 Dickeya zeae Ech1591 8119555 YP_003004404.1 CDS pntB NC_012912.1 2390182 2391555 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 2390182..2391555 Dickeya zeae Ech1591 8119556 YP_003004405.1 CDS Dd1591_2080 NC_012912.1 2391651 2392622 R with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE complement(2391651..2392622) Dickeya zeae Ech1591 8119557 YP_003004406.1 CDS Dd1591_2081 NC_012912.1 2392756 2393508 R Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator complement(2392756..2393508) Dickeya zeae Ech1591 8119558 YP_003004407.1 CDS Dd1591_2082 NC_012912.1 2393672 2394211 R KEGG: eca:ECA2208 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; methylated-DNA/protein-cysteine methyltransferase complement(2393672..2394211) Dickeya zeae Ech1591 8119559 YP_003004408.1 CDS Dd1591_2083 NC_012912.1 2394386 2396329 R PFAM: domain of unknown function DUF1745; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: esa:ESA_00603 hypothetical protein; methyl-accepting chemotaxis sensory transducer complement(2394386..2396329) Dickeya zeae Ech1591 8119560 YP_003004409.1 CDS Dd1591_2085 NC_012912.1 2397539 2398111 D KEGG: eca:ECA2172 hypothetical protein; hypothetical protein 2397539..2398111 Dickeya zeae Ech1591 8119562 YP_003004410.1 CDS Dd1591_2086 NC_012912.1 2398315 2400276 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA0080 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2398315..2400276 Dickeya zeae Ech1591 8119563 YP_003004411.1 CDS Dd1591_2087 NC_012912.1 2400355 2401632 R PFAM: putative sugar-specific permease SgaT/UlaA; KEGG: ent:Ent638_1785 putative sugar-specific permease, SgaT/UlaA; putative sugar-specific permease SgaT/UlaA complement(2400355..2401632) Dickeya zeae Ech1591 8119564 YP_003004412.1 CDS Dd1591_2088 NC_012912.1 2401838 2402344 R PFAM: Phenolic acid decarboxylase; KEGG: kpe:KPK_0265 phenolic acid decarboxylase; Phenolic acid decarboxylase complement(2401838..2402344) Dickeya zeae Ech1591 8119565 YP_003004413.1 CDS Dd1591_2089 NC_012912.1 2402485 2403381 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0068 LysR family transcriptional regulator; LysR family transcriptional regulator 2402485..2403381 Dickeya zeae Ech1591 8119566 YP_003004414.1 CDS Dd1591_2090 NC_012912.1 2403430 2404554 R PFAM: ROK family protein; KEGG: atc:AGR_L_609 hypothetical protein; ROK family protein complement(2403430..2404554) Dickeya zeae Ech1591 8119567 YP_003004415.1 CDS Dd1591_2091 NC_012912.1 2405093 2406172 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypb:YPTS_2074 ABC transporter related; ABC transporter 2405093..2406172 Dickeya zeae Ech1591 8119568 YP_003004416.1 CDS Dd1591_2092 NC_012912.1 2406169 2407023 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msu:MS0583 PotB protein; binding-protein-dependent transport systems inner membrane component 2406169..2407023 Dickeya zeae Ech1591 8119569 YP_003004417.1 CDS Dd1591_2093 NC_012912.1 2407027 2407860 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: asu:Asuc_1526 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2407027..2407860 Dickeya zeae Ech1591 8119570 YP_003004418.1 CDS Dd1591_2094 NC_012912.1 2407899 2409032 D KEGG: ypi:YpsIP31758_2059 putative spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein; putative spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein 2407899..2409032 Dickeya zeae Ech1591 8119571 YP_003004419.1 CDS Dd1591_2095 NC_012912.1 2409160 2409918 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: psp:PSPPH_4534 glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 2409160..2409918 Dickeya zeae Ech1591 8119572 YP_003004420.1 CDS Dd1591_2096 NC_012912.1 2409934 2410698 D PFAM: inositol monophosphatase; KEGG: pst:PSPTO_0659 inositol monophosphatase family protein; inositol monophosphatase 2409934..2410698 Dickeya zeae Ech1591 8119573 YP_003004421.1 CDS Dd1591_2097 NC_012912.1 2410771 2412327 R KEGG: rec:RHECIAT_PC0000667 hypothetical protein; hypothetical protein complement(2410771..2412327) Dickeya zeae Ech1591 8119574 YP_003004422.1 CDS Dd1591_2098 NC_012912.1 2412443 2414281 R KEGG: ret:RHE_PF00443 putative dehydrogenase large subunit protein; putative dehydrogenase large subunit protein complement(2412443..2414281) Dickeya zeae Ech1591 8119575 YP_003004423.1 CDS Dd1591_2099 NC_012912.1 2414278 2414736 R KEGG: rec:RHECIAT_PC0000668 hypothetical protein; hypothetical protein complement(2414278..2414736) Dickeya zeae Ech1591 8119576 YP_003004424.1 CDS Dd1591_2100 NC_012912.1 2415286 2417820 R KEGG: eca:ECA2217 putative virulence factor; putative virulence factor complement(2415286..2417820) Dickeya zeae Ech1591 8119577 YP_003004425.1 CDS Dd1591_2101 NC_012912.1 2417817 2420807 R PFAM: virulence protein SrfB; KEGG: eca:ECA2218 putative virulence effector protein; virulence protein SrfB complement(2417817..2420807) Dickeya zeae Ech1591 8119578 YP_003004426.1 CDS Dd1591_2102 NC_012912.1 2420810 2422138 R KEGG: eca:ECA2219 putative virulence effector protein; putative virulence effector protein complement(2420810..2422138) Dickeya zeae Ech1591 8119579 YP_003004427.1 CDS Dd1591_2103 NC_012912.1 2422377 2422532 D hypothetical protein 2422377..2422532 Dickeya zeae Ech1591 8119580 YP_003004428.1 CDS Dd1591_2104 NC_012912.1 2422563 2423420 D PFAM: NmrA family protein; TrkA-N domain protein; KEGG: yen:YE1738 hypothetical protein; NmrA family protein 2422563..2423420 Dickeya zeae Ech1591 8118147 YP_003004429.1 CDS Dd1591_2106 NC_012912.1 2424451 2424762 D PFAM: metalloprotease inhibitor I38; KEGG: eca:ECA2784 protease inhibitor; metalloprotease inhibitor I38 2424451..2424762 Dickeya zeae Ech1591 8118149 YP_003004430.1 CDS Dd1591_2107 NC_012912.1 2424779 2426506 D KEGG: eca:ECA2783 protease secretion ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 2424779..2426506 Dickeya zeae Ech1591 8118150 YP_003004431.1 CDS Dd1591_2108 NC_012912.1 2426520 2427866 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA2782 protease secretion protein; type I secretion membrane fusion protein, HlyD family 2426520..2427866 Dickeya zeae Ech1591 8118151 YP_003004432.1 CDS Dd1591_2109 NC_012912.1 2427879 2429279 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: eca:ECA2781 protease secretion protein; type I secretion outer membrane protein, TolC family 2427879..2429279 Dickeya zeae Ech1591 8118152 YP_003004433.1 CDS Dd1591_2110 NC_012912.1 2429447 2430889 D KEGG: eca:ECA2785 metalloprotease; PFAM: Peptidase M10 serralysin ; Hemolysin-type calcium-binding region; peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase; Serralysin 2429447..2430889 Dickeya zeae Ech1591 8118153 YP_003004434.1 CDS Dd1591_2111 NC_012912.1 2431041 2432486 D KEGG: eca:ECA2785 metalloprotease; PFAM: Peptidase M10 serralysin ; Hemolysin-type calcium-binding region; peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase; Serralysin 2431041..2432486 Dickeya zeae Ech1591 8118154 YP_003004435.1 CDS Dd1591_2112 NC_012912.1 2432905 2434341 D KEGG: eca:ECA2785 metalloprotease; PFAM: Peptidase M10 serralysin ; Hemolysin-type calcium-binding region; peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase; Serralysin 2432905..2434341 Dickeya zeae Ech1591 8118155 YP_003004436.1 CDS Dd1591_2113 NC_012912.1 2434712 2435335 D PFAM: regulatory protein TetR; KEGG: eta:ETA_17340 TetR-family transcriptional regulator; TetR family transcriptional regulator 2434712..2435335 Dickeya zeae Ech1591 8118156 YP_003004437.1 CDS Dd1591_2114 NC_012912.1 2435910 2436575 R KEGG: eca:ECA1567 putative lipoprotein; putative lipoprotein complement(2435910..2436575) Dickeya zeae Ech1591 8118157 YP_003004438.1 CDS Dd1591_2115 NC_012912.1 2436846 2437541 R PFAM: Rare lipoprotein A; KEGG: eca:ECA2220 putative cellulase; Rare lipoprotein A complement(2436846..2437541) Dickeya zeae Ech1591 8118158 YP_003004439.1 CDS Dd1591_2116 NC_012912.1 2437836 2438804 R TIGRFAM: C4-dicarboxylate transporter/malic acid transport protein; PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cko:CKO_01466 potassium-tellurite ethidium and proflavin transporter; potassium-tellurite ethidium and proflavin transporter complement(2437836..2438804) Dickeya zeae Ech1591 8118159 YP_003004440.1 CDS Dd1591_2117 NC_012912.1 2439867 2440871 D PFAM: acyltransferase 3; KEGG: rso:RSc3292 hypothetical protein; acyltransferase 3 2439867..2440871 Dickeya zeae Ech1591 8118160 YP_003004441.1 CDS Dd1591_2118 NC_012912.1 2440981 2441325 D PFAM: protein of unknown function DUF419; KEGG: pst:PSPTO_3016 hypothetical protein; hypothetical protein 2440981..2441325 Dickeya zeae Ech1591 8118161 YP_003004442.1 CDS Dd1591_2119 NC_012912.1 2441406 2442299 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA2922 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2441406..2442299) Dickeya zeae Ech1591 8118162 YP_003004443.1 CDS Dd1591_2120 NC_012912.1 2442519 2442923 D KEGG: eca:ECA1476 hypothetical protein; hypothetical protein 2442519..2442923 Dickeya zeae Ech1591 8118163 YP_003004444.1 CDS Dd1591_2121 NC_012912.1 2443357 2444763 D PFAM: Integrase catalytic region; KEGG: kpe:KPK_B0045 transposase; Integrase catalytic region 2443357..2444763 Dickeya zeae Ech1591 8118164 YP_003004445.1 CDS Dd1591_2122 NC_012912.1 2444818 2445126 R KEGG: shm:Shewmr7_1024 hypothetical protein; hypothetical protein complement(2444818..2445126) Dickeya zeae Ech1591 8118165 YP_003004446.1 CDS Dd1591_2123 NC_012912.1 2445339 2445659 R hypothetical protein complement(2445339..2445659) Dickeya zeae Ech1591 8118166 YP_003004447.1 CDS Dd1591_2124 NC_012912.1 2445689 2445859 R KEGG: spe:Spro_4949 helix-turn-helix domain-containing protein; putative transcription regulator with HTH domain complement(2445689..2445859) Dickeya zeae Ech1591 8118167 YP_003004448.1 CDS Dd1591_2125 NC_012912.1 2445988 2446470 R PFAM: helix-turn-helix HxlR type; KEGG: gbe:GbCGDNIH1_1161 transcriptional regulator, MarR family; HxlR family transcriptional regulator complement(2445988..2446470) Dickeya zeae Ech1591 8118168 YP_003004449.1 CDS Dd1591_2126 NC_012912.1 2446971 2447960 D PFAM: NmrA family protein; KEGG: bph:Bphy_6079 NmrA family protein; NmrA family protein 2446971..2447960 Dickeya zeae Ech1591 8118169 YP_003004450.1 CDS Dd1591_2128 NC_012912.1 2448404 2449225 D TIGRFAM: mannosyl-3-phosphoglycerate phosphatase family; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; sucrose-6F-phosphate phosphohydrolase; KEGG: spe:Spro_2341 mannosyl-3-phosphoglycerate phosphatase; mannosyl-3-phosphoglycerate phosphatase family 2448404..2449225 Dickeya zeae Ech1591 8118171 YP_003004451.1 CDS Dd1591_2129 NC_012912.1 2449245 2450471 D KEGG: eca:ECA2249 hypothetical protein; hypothetical protein 2449245..2450471 Dickeya zeae Ech1591 8118172 YP_003004452.1 CDS Dd1591_2130 NC_012912.1 2450841 2451590 D NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase 2450841..2451590 Dickeya zeae Ech1591 8118173 YP_003004453.1 CDS Dd1591_2131 NC_012912.1 2451819 2452175 D KEGG: eca:ECA2253 hypothetical protein; hypothetical protein 2451819..2452175 Dickeya zeae Ech1591 8118174 YP_003004454.1 CDS Dd1591_2132 NC_012912.1 2452294 2452965 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; putative dithiobiotin synthetase complement(2452294..2452965) Dickeya zeae Ech1591 8118175 YP_003004455.1 CDS Dd1591_2133 NC_012912.1 2453111 2454328 R PFAM: ROK family protein; KEGG: eca:ECA2258 transcriptional regulator; ROK family protein complement(2453111..2454328) Dickeya zeae Ech1591 8118176 YP_003004456.1 CDS Dd1591_2134 NC_012912.1 2454444 2455358 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA2259 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2454444..2455358) Dickeya zeae Ech1591 8118177 YP_003004457.1 CDS Dd1591_2135 NC_012912.1 2455470 2456747 D PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA2260 putative transporter; major facilitator superfamily protein 2455470..2456747 Dickeya zeae Ech1591 8118178 YP_003004458.1 CDS Dd1591_2136 NC_012912.1 2456915 2457841 D binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 2456915..2457841 Dickeya zeae Ech1591 8118179 YP_003004459.1 CDS fumC NC_012912.1 2457845 2459242 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2457845..2459242) Dickeya zeae Ech1591 8118180 YP_003004460.1 CDS Dd1591_2138 NC_012912.1 2459420 2460604 D KEGG: eca:ECA2263 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase, class I 2459420..2460604 Dickeya zeae Ech1591 8118181 YP_003004461.1 CDS Dd1591_2139 NC_012912.1 2460799 2462352 D PFAM: protein of unknown function DUF945; KEGG: eca:ECA2264 hypothetical protein; hypothetical protein 2460799..2462352 Dickeya zeae Ech1591 8118182 YP_003004462.1 CDS Dd1591_2140 NC_012912.1 2462484 2462948 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ccs:CCNA_03270 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2462484..2462948) Dickeya zeae Ech1591 8118183 YP_003004463.1 CDS Dd1591_2141 NC_012912.1 2463061 2464044 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mmw:Mmwyl1_4055 hypothetical protein; hypothetical protein 2463061..2464044 Dickeya zeae Ech1591 8118184 YP_003004464.1 CDS Dd1591_2142 NC_012912.1 2464276 2465289 D KEGG: eca:ECA2266 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 2464276..2465289 Dickeya zeae Ech1591 8118185 YP_003004465.1 CDS Dd1591_2143 NC_012912.1 2465398 2465856 R PFAM: Calcium/calmodulin dependent protein kinase II association-domain protein; KEGG: eca:ECA2267 hypothetical protein; calcium/calmodulin dependent protein kinase II association-domain-containing protein complement(2465398..2465856) Dickeya zeae Ech1591 8118186 YP_003004466.1 CDS Dd1591_2144 NC_012912.1 2466033 2467034 R PFAM: Bile acid:sodium symporter; KEGG: eca:ECA2268 putative sodium bile acid symporter; Bile acid:sodium symporter complement(2466033..2467034) Dickeya zeae Ech1591 8118187 YP_003004467.1 CDS Dd1591_2145 NC_012912.1 2467190 2468239 R PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: eca:ECA2269 putative oxidoreductase; putative oxidoreductase complement(2467190..2468239) Dickeya zeae Ech1591 8118188 YP_003004468.1 CDS Dd1591_2146 NC_012912.1 2468430 2469380 R positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; AraC family transcriptional regulator complement(2468430..2469380) Dickeya zeae Ech1591 8118189 YP_003004469.1 CDS araH NC_012912.1 2469450 2470436 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter permease protein complement(2469450..2470436) Dickeya zeae Ech1591 8118190 YP_003004470.1 CDS araG NC_012912.1 2470454 2471977 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter ATP-binding protein complement(2470454..2471977) Dickeya zeae Ech1591 8118191 YP_003004471.1 CDS Dd1591_2149 NC_012912.1 2472063 2473046 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: eca:ECA2273 L-arabinose-binding periplasmic protein; periplasmic binding protein/LacI transcriptional regulator complement(2472063..2473046) Dickeya zeae Ech1591 8118192 YP_003004472.1 CDS Dd1591_2150 NC_012912.1 2473429 2475114 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 2473429..2475114 Dickeya zeae Ech1591 8118193 YP_003004473.1 CDS Dd1591_2151 NC_012912.1 2475168 2476679 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 2475168..2476679 Dickeya zeae Ech1591 8118194 YP_003004474.1 CDS Dd1591_2152 NC_012912.1 2476779 2478596 R PFAM: Rhamnogalacturonate lyase; KEGG: eca:ECA0804 rhamnogalacturonate lyase; Rhamnogalacturonate lyase complement(2476779..2478596) Dickeya zeae Ech1591 8118195 YP_003004475.1 CDS Dd1591_2153 NC_012912.1 2479051 2479266 D YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein 2479051..2479266 Dickeya zeae Ech1591 8118196 YP_003004476.1 CDS Dd1591_2154 NC_012912.1 2479917 2480498 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: yen:YE1994 Na(+)-translocating NADH-quinone reductase subunit E; RnfABCDGE type electron transport complex subunit A 2479917..2480498 Dickeya zeae Ech1591 8118197 YP_003004477.1 CDS Dd1591_2155 NC_012912.1 2480498 2481088 D TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2277 electron transport complex protein RnfB; RnfABCDGE type electron transport complex subunit B 2480498..2481088 Dickeya zeae Ech1591 8118198 YP_003004478.1 CDS Dd1591_2156 NC_012912.1 2481081 2483102 D TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2278 electron transport complex protein RnfC; RnfABCDGE type electron transport complex subunit C 2481081..2483102 Dickeya zeae Ech1591 8118199 YP_003004479.1 CDS Dd1591_2157 NC_012912.1 2483103 2484155 D TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: spe:Spro_2237 electron transport complex protein RnfD; RnfABCDGE type electron transport complex subunit D 2483103..2484155 Dickeya zeae Ech1591 8118200 YP_003004480.1 CDS Dd1591_2158 NC_012912.1 2484165 2484797 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2484165..2484797 Dickeya zeae Ech1591 8118201 YP_003004481.1 CDS Dd1591_2159 NC_012912.1 2484794 2485486 D TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: eca:ECA2281 SoxR-reducing system protein RsxE; RnfABCDGE type electron transport complex subunit E 2484794..2485486 Dickeya zeae Ech1591 8118202 YP_003004482.1 CDS Dd1591_2160 NC_012912.1 2485498 2486133 D KEGG: stm:STM1453 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 2485498..2486133 Dickeya zeae Ech1591 8118203 YP_003004483.1 CDS Dd1591_2161 NC_012912.1 2486265 2487239 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA2284 transcriptional regulator CysB; LysR family transcriptional regulator complement(2486265..2487239) Dickeya zeae Ech1591 8118204 YP_003004484.1 CDS Dd1591_2162 NC_012912.1 2487574 2490177 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2487574..2490177) Dickeya zeae Ech1591 8118205 YP_003004485.1 CDS Dd1591_2163 NC_012912.1 2490619 2490888 D KEGG: eca:ECA2287 hypothetical protein; hypothetical protein 2490619..2490888 Dickeya zeae Ech1591 8118206 YP_003004486.1 CDS Dd1591_2164 NC_012912.1 2491272 2491865 D KEGG: plu:plu4748 hypothetical protein; hypothetical protein 2491272..2491865 Dickeya zeae Ech1591 8118207 YP_003004487.1 CDS Dd1591_2165 NC_012912.1 2492093 2492581 R KEGG: eca:ECA0368 hypothetical protein; hypothetical protein complement(2492093..2492581) Dickeya zeae Ech1591 8118208 YP_003004488.1 CDS Dd1591_2166 NC_012912.1 2493117 2494163 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(2493117..2494163) Dickeya zeae Ech1591 8118209 YP_003004489.1 CDS Dd1591_2167 NC_012912.1 2494456 2495217 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eca:ECA2289 short chain dehydrogenase; short chain dehydrogenase 2494456..2495217 Dickeya zeae Ech1591 8118210 YP_003004490.1 CDS Dd1591_2168 NC_012912.1 2495239 2495829 D KEGG: ypy:YPK_2038 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2495239..2495829 Dickeya zeae Ech1591 8118211 YP_003004491.1 CDS Dd1591_2169 NC_012912.1 2495886 2496791 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B complement(2495886..2496791) Dickeya zeae Ech1591 8118212 YP_003004492.1 CDS Dd1591_2170 NC_012912.1 2496995 2497615 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: eca:ECA2292 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein complement(2496995..2497615) Dickeya zeae Ech1591 8118213 YP_003004493.1 CDS Dd1591_2171 NC_012912.1 2497736 2498608 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: eca:ECA2293 putative phosphoesterase; PHP domain-containing protein complement(2497736..2498608) Dickeya zeae Ech1591 8118214 YP_003004494.1 CDS Dd1591_2172 NC_012912.1 2498981 2500543 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2498981..2500543 Dickeya zeae Ech1591 8118215 YP_003004495.1 CDS Dd1591_2173 NC_012912.1 2500543 2501121 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2500543..2501121 Dickeya zeae Ech1591 8118216 YP_003004496.1 CDS trpD NC_012912.1 2501140 2502138 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2501140..2502138 Dickeya zeae Ech1591 8118217 YP_003004497.1 CDS Dd1591_2175 NC_012912.1 2502147 2503532 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2502147..2503532 Dickeya zeae Ech1591 8118218 YP_003004498.1 CDS Dd1591_2176 NC_012912.1 2503550 2504740 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2503550..2504740 Dickeya zeae Ech1591 8118219 YP_003004499.1 CDS Dd1591_2177 NC_012912.1 2504740 2505549 D TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; KEGG: spe:Spro_2672 tryptophan synthase, alpha subunit; tryptophan synthase subunit alpha 2504740..2505549 Dickeya zeae Ech1591 8118220 YP_003004500.1 CDS Dd1591_2178 NC_012912.1 2505759 2506037 D hypothetical protein 2505759..2506037 Dickeya zeae Ech1591 8118221 YP_003004501.1 CDS Dd1591_2179 NC_012912.1 2506282 2507004 D PFAM: Oligogalacturonate-specific porin; KEGG: eca:ECA2302 putative oligogalacturonate-specific porin; oligogalacturonate-specific porin 2506282..2507004 Dickeya zeae Ech1591 8118222 YP_003004502.1 CDS Dd1591_2180 NC_012912.1 2507118 2507750 R receptor for colicin S4; outer membrane protein W complement(2507118..2507750) Dickeya zeae Ech1591 8118223 YP_003004503.1 CDS Dd1591_2181 NC_012912.1 2508033 2508395 D PFAM: protein of unknown function UPF0153; KEGG: kpe:KPK_3194 hypothetical protein; hypothetical protein 2508033..2508395 Dickeya zeae Ech1591 8118224 YP_003004504.1 CDS Dd1591_2182 NC_012912.1 2508510 2509262 D PFAM: protein of unknown function UPF0259; KEGG: eca:ECA2305 hypothetical protein; hypothetical protein 2508510..2509262 Dickeya zeae Ech1591 8118225 YP_003004505.1 CDS Dd1591_2183 NC_012912.1 2509459 2510019 D TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: spe:Spro_2677 intracellular septation protein A; intracellular septation protein A 2509459..2510019 Dickeya zeae Ech1591 8118226 YP_003004506.1 CDS Dd1591_2184 NC_012912.1 2510071 2510493 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 2510071..2510493 Dickeya zeae Ech1591 8119181 YP_003004507.1 CDS Dd1591_2185 NC_012912.1 2510573 2511322 R membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transport protein TonB complement(2510573..2511322) Dickeya zeae Ech1591 8119182 YP_003004508.1 CDS Dd1591_2186 NC_012912.1 2511525 2511821 D PFAM: YCII-related; KEGG: eum:ECUMN_1550 putative enzyme; YCII-like protein 2511525..2511821 Dickeya zeae Ech1591 8119183 YP_003004509.1 CDS Dd1591_2187 NC_012912.1 2511951 2513651 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA2317 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2511951..2513651 Dickeya zeae Ech1591 8119184 YP_003004510.1 CDS Dd1591_2188 NC_012912.1 2513719 2513895 R KEGG: ypi:YpsIP31758_1952 hypothetical protein; hypothetical protein complement(2513719..2513895) Dickeya zeae Ech1591 8119185 YP_003004511.1 CDS cls NC_012912.1 2514102 2515562 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2514102..2515562 Dickeya zeae Ech1591 8119186 YP_003004512.1 CDS Dd1591_2190 NC_012912.1 2515616 2515939 D highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 2515616..2515939 Dickeya zeae Ech1591 8119187 YP_003004513.1 CDS Dd1591_2191 NC_012912.1 2516046 2517050 R KEGG: eca:ECA2320 oligopeptide transport ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase complement(2516046..2517050) Dickeya zeae Ech1591 8119188 YP_003004514.1 CDS oppD NC_012912.1 2517047 2518036 R KEGG: spe:Spro_2698 oligopeptide transporter ATP-binding component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide transporter ATP-binding component complement(2517047..2518036) Dickeya zeae Ech1591 8119189 YP_003004515.1 CDS Dd1591_2193 NC_012912.1 2518053 2518961 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2322 oligopeptide transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(2518053..2518961) Dickeya zeae Ech1591 8119190 YP_003004516.1 CDS oppB NC_012912.1 2518974 2519894 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2323 oligopeptide transporter permease; oligopeptide transporter permease complement(2518974..2519894) Dickeya zeae Ech1591 8119191 YP_003004517.1 CDS Dd1591_2195 NC_012912.1 2519987 2521630 R PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA2324 periplasmic oligopeptide-binding protein; extracellular solute-binding protein family 5 complement(2519987..2521630) Dickeya zeae Ech1591 8119192 YP_003004518.1 CDS Dd1591_2196 NC_012912.1 2522641 2523285 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ypi:YpsIP31758_1962 hypothetical protein; hypothetical protein complement(2522641..2523285) Dickeya zeae Ech1591 8119193 YP_003004519.1 CDS Dd1591_2197 NC_012912.1 2523832 2526534 D PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: eca:ECA2326 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2523832..2526534 Dickeya zeae Ech1591 8119194 YP_003004520.1 CDS Dd1591_2198 NC_012912.1 2527154 2527753 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2527154..2527753) Dickeya zeae Ech1591 8119195 YP_003004521.1 CDS Dd1591_2199 NC_012912.1 2528137 2528544 D PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: spe:Spro_2706 global DNA-binding transcriptional dual regulator H-NS; histone family protein nucleoid-structuring protein H-NS 2528137..2528544 Dickeya zeae Ech1591 8119196 YP_003004522.1 CDS Dd1591_2200 NC_012912.1 2528663 2529574 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(2528663..2529574) Dickeya zeae Ech1591 8119197 YP_003004523.1 CDS Dd1591_2201 NC_012912.1 2529774 2530790 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: eca:ECA2330 response regulator of RpoS; response regulator of RpoS complement(2529774..2530790) Dickeya zeae Ech1591 8119198 YP_003004524.1 CDS Dd1591_2202 NC_012912.1 2530843 2531757 R PFAM: Patatin; KEGG: eca:ECA2331 hypothetical protein; hypothetical protein complement(2530843..2531757) Dickeya zeae Ech1591 8119199 YP_003004525.1 CDS Dd1591_2203 NC_012912.1 2531978 2532445 D PFAM: SEC-C motif domain protein; KEGG: eca:ECA2332 hypothetical protein; hypothetical protein 2531978..2532445 Dickeya zeae Ech1591 8119200 YP_003004526.1 CDS purU NC_012912.1 2532525 2533376 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 2532525..2533376 Dickeya zeae Ech1591 8119201 YP_003004527.1 CDS Dd1591_2205 NC_012912.1 2533818 2534438 R PFAM: protein of unknown function UPF0126; KEGG: eca:ECA2334 hypothetical protein; hypothetical protein complement(2533818..2534438) Dickeya zeae Ech1591 8119203 YP_003004528.1 CDS Dd1591_2206 NC_012912.1 2534788 2535594 D TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: spe:Spro_2715 exonuclease III; exodeoxyribonuclease III 2534788..2535594 Dickeya zeae Ech1591 8119204 YP_003004529.1 CDS Dd1591_2207 NC_012912.1 2535633 2536025 R PFAM: protein of unknown function DUF1496; KEGG: eca:ECA2336 hypothetical protein; hypothetical protein complement(2535633..2536025) Dickeya zeae Ech1591 8119205 YP_003004530.1 CDS Dd1591_2208 NC_012912.1 2536031 2537956 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2536031..2537956) Dickeya zeae Ech1591 8119206 YP_003004531.1 CDS Dd1591_2209 NC_012912.1 2538036 2538587 R PFAM: nitroreductase; KEGG: eca:ECA2338 hypothetical protein; hypothetical protein complement(2538036..2538587) Dickeya zeae Ech1591 8119207 YP_003004532.1 CDS Dd1591_2210 NC_012912.1 2538853 2540703 D TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: eca:ECA2339 protease 4; signal peptide peptidase SppA, 67K type 2538853..2540703 Dickeya zeae Ech1591 8119208 YP_003004533.1 CDS ansA NC_012912.1 2540822 2541841 D converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 2540822..2541841 Dickeya zeae Ech1591 8119209 YP_003004534.1 CDS Dd1591_2212 NC_012912.1 2541896 2542537 D catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 2541896..2542537 Dickeya zeae Ech1591 8119210 YP_003004535.1 CDS Dd1591_2213 NC_012912.1 2542583 2542858 R PFAM: protein of unknown function DUF1315; KEGG: eca:ECA2342 hypothetical protein; hypothetical protein complement(2542583..2542858) Dickeya zeae Ech1591 8119211 YP_003004536.1 CDS Dd1591_2214 NC_012912.1 2542924 2543340 R KEGG: ypi:YpsIP31758_1986 methionine sulfoxide reductase B; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(2542924..2543340) Dickeya zeae Ech1591 8119212 YP_003004537.1 CDS Dd1591_2215 NC_012912.1 2543690 2544685 D KEGG: yen:YE2265 glyceraldehyde 3-phosphate dehydrogenase A; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 2543690..2544685 Dickeya zeae Ech1591 8119213 YP_003004538.1 CDS Dd1591_2216 NC_012912.1 2545111 2545983 D PFAM: Aldose 1-epimerase; KEGG: eca:ECA2345 putative aldose 1-epimerase; aldose 1-epimerase 2545111..2545983 Dickeya zeae Ech1591 8119214 YP_003004539.1 CDS Dd1591_2217 NC_012912.1 2546038 2546889 R PFAM: aldo/keto reductase; KEGG: eca:ECA2346 putative aldo/keto reductase; aldo/keto reductase complement(2546038..2546889) Dickeya zeae Ech1591 8119215 YP_003004540.1 CDS Dd1591_2218 NC_012912.1 2547067 2547816 R PFAM: MltA-interacting MipA family protein; KEGG: eca:ECA2347 MltA-interacting protein; MltA-interacting MipA family protein complement(2547067..2547816) Dickeya zeae Ech1591 8119216 YP_003004541.1 CDS Dd1591_2219 NC_012912.1 2548269 2550203 D PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: eca:ECA2348 hypothetical protein; putative serine protein kinase, PrkA 2548269..2550203 Dickeya zeae Ech1591 8119217 YP_003004542.1 CDS Dd1591_2220 NC_012912.1 2550222 2551517 D PFAM: protein of unknown function DUF444; KEGG: eca:ECA2349 hypothetical protein; hypothetical protein 2550222..2551517 Dickeya zeae Ech1591 8119218 YP_003004543.1 CDS Dd1591_2221 NC_012912.1 2551739 2552542 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1552 ABC transporter ATP-binding protein; ABC transporter 2551739..2552542 Dickeya zeae Ech1591 8119219 YP_003004544.1 CDS Dd1591_2222 NC_012912.1 2552547 2553365 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_2740 ABC transporter-related protein; ABC transporter 2552547..2553365 Dickeya zeae Ech1591 8119220 YP_003004545.1 CDS Dd1591_2223 NC_012912.1 2553391 2554899 D PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA1549 putative ABC transporter substrate-binding protein; extracellular solute-binding protein family 5 2553391..2554899 Dickeya zeae Ech1591 8119221 YP_003004546.1 CDS Dd1591_2224 NC_012912.1 2554896 2556644 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1548 putative transport system membrane protein; binding-protein-dependent transport systems inner membrane component 2554896..2556644 Dickeya zeae Ech1591 8119222 YP_003004547.1 CDS Dd1591_2225 NC_012912.1 2556742 2556990 R PFAM: Transglycosylase-associated protein; KEGG: eca:ECA2044 hypothetical protein; transglycosylase-associated protein complement(2556742..2556990) Dickeya zeae Ech1591 8119223 YP_003004548.1 CDS Dd1591_2226 NC_012912.1 2557326 2558015 D PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; KEGG: ppd:Ppro_2565 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 2557326..2558015 Dickeya zeae Ech1591 8119224 YP_003004549.1 CDS Dd1591_2227 NC_012912.1 2558073 2558276 R KEGG: yps:YPTB1832 hypothetical protein; hypothetical protein complement(2558073..2558276) Dickeya zeae Ech1591 8119225 YP_003004550.1 CDS Dd1591_2228 NC_012912.1 2558643 2559044 R KEGG: aca:ACP_1655 hypothetical protein; hypothetical protein complement(2558643..2559044) Dickeya zeae Ech1591 8119226 YP_003004551.1 CDS Dd1591_2229 NC_012912.1 2559284 2559547 R PFAM: protein of unknown function DUF1364; KEGG: kpe:KPK_2854 hypothetical protein; hypothetical protein complement(2559284..2559547) Dickeya zeae Ech1591 8119227 YP_003004552.1 CDS Dd1591_2230 NC_012912.1 2559640 2559840 D hypothetical protein 2559640..2559840 Dickeya zeae Ech1591 8119228 YP_003004553.1 CDS Dd1591_2231 NC_012912.1 2560013 2560237 D KEGG: sml:Smlt3111 hypothetical protein; hypothetical protein 2560013..2560237 Dickeya zeae Ech1591 8119229 YP_003004554.1 CDS Dd1591_2232 NC_012912.1 2560344 2560664 R PFAM: IS1 transposase; KEGG: sdy:SDY_2013 iso-IS1 ORF2; IS1 transposase complement(2560344..2560664) Dickeya zeae Ech1591 8119230 YP_003004555.1 CDS Dd1591_2233 NC_012912.1 2560681 2560935 R hypothetical protein complement(2560681..2560935) Dickeya zeae Ech1591 8119231 YP_003004556.1 CDS Dd1591_2234 NC_012912.1 2561713 2562051 R KEGG: eca:ECA2472 hypothetical protein; hypothetical protein complement(2561713..2562051) Dickeya zeae Ech1591 8119232 YP_003004557.1 CDS Dd1591_2235 NC_012912.1 2562286 2562684 D hypothetical protein 2562286..2562684 Dickeya zeae Ech1591 8119233 YP_003004558.1 CDS Dd1591_2236 NC_012912.1 2562869 2563378 R PFAM: Ferritin Dps family protein; KEGG: eca:ECA2473 ferritin; Ferroxidase complement(2562869..2563378) Dickeya zeae Ech1591 8119234 YP_003004559.1 CDS Dd1591_2237 NC_012912.1 2563636 2564511 R PFAM: copper resistance D domain protein; KEGG: seh:SeHA_C2088 copper resistance protein D; copper resistance D domain-containing protein complement(2563636..2564511) Dickeya zeae Ech1591 8119235 YP_003004560.1 CDS Dd1591_2238 NC_012912.1 2564536 2564916 R PFAM: copper resistance protein CopC; KEGG: sgl:SG1276 putative copper resistance protein; copper resistance protein CopC complement(2564536..2564916) Dickeya zeae Ech1591 8119236 YP_003004561.1 CDS Dd1591_2239 NC_012912.1 2565078 2565308 D PFAM: DNA polymerase II beta subunit; KEGG: spe:Spro_1941 DNA polymerase III subunit theta; DNA polymerase II subunit beta 2565078..2565308 Dickeya zeae Ech1591 8119237 YP_003004562.1 CDS Dd1591_2240 NC_012912.1 2565514 2565630 D KEGG: ypg:YpAngola_A1627 hypothetical protein; hypothetical protein 2565514..2565630 Dickeya zeae Ech1591 8119238 YP_003004563.1 CDS Dd1591_2241 NC_012912.1 2565838 2567889 R PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: eca:ECA2476 protease II; oligopeptidase B complement(2565838..2567889) Dickeya zeae Ech1591 8119239 YP_003004564.1 CDS purT NC_012912.1 2568157 2569338 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 2568157..2569338 Dickeya zeae Ech1591 8119240 YP_003004565.1 CDS Dd1591_2243 NC_012912.1 2569415 2570056 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2569415..2570056) Dickeya zeae Ech1591 8119241 YP_003004566.1 CDS Dd1591_2244 NC_012912.1 2570212 2571687 R KEGG: eca:ECA2479 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(2570212..2571687) Dickeya zeae Ech1591 8119242 YP_003004567.1 CDS Dd1591_2245 NC_012912.1 2572053 2572922 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2572053..2572922 Dickeya zeae Ech1591 8119243 YP_003004568.1 CDS Dd1591_2246 NC_012912.1 2573106 2574548 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2573106..2574548 Dickeya zeae Ech1591 8119244 YP_003004569.1 CDS Dd1591_2247 NC_012912.1 2574717 2575139 R KEGG: hypothetical protein; hypothetical protein complement(2574717..2575139) Dickeya zeae Ech1591 8119245 YP_003004570.1 CDS Dd1591_2248 NC_012912.1 2575348 2575704 R similar to GK23239 gene product from transcript GK23239-RA; KEGG: GK23239 gene product from transcript GK23239-RA; hypothetical protein complement(2575348..2575704) Dickeya zeae Ech1591 8119246 YP_003004571.1 CDS Dd1591_2249 NC_012912.1 2576066 2577052 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2576066..2577052) Dickeya zeae Ech1591 8119247 YP_003004572.1 CDS Dd1591_2250 NC_012912.1 2577200 2578612 R PFAM: Peptidase M23; Peptidoglycan-binding LysM; Opacity-associated protein A; Opacity-associated protein A domain protein; SMART: Peptidoglycan-binding LysM; KEGG: eca:ECA2483 hypothetical protein; hypothetical protein complement(2577200..2578612) Dickeya zeae Ech1591 8119248 YP_003004573.1 CDS znuA NC_012912.1 2578628 2579650 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic component complement(2578628..2579650) Dickeya zeae Ech1591 8119249 YP_003004574.1 CDS Dd1591_2252 NC_012912.1 2579726 2580484 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2485 high-affinity zinc transporter ATPase; ABC transporter 2579726..2580484 Dickeya zeae Ech1591 8119250 YP_003004575.1 CDS znuB NC_012912.1 2580481 2581266 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane component 2580481..2581266 Dickeya zeae Ech1591 8119251 YP_003004576.1 CDS ruvB NC_012912.1 2581437 2582447 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2581437..2582447) Dickeya zeae Ech1591 8119252 YP_003004577.1 CDS ruvA NC_012912.1 2582455 2583072 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2582455..2583072) Dickeya zeae Ech1591 8119253 YP_003004578.1 CDS Dd1591_2257 NC_012912.1 2583588 2584913 D PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_05087 hypothetical protein; transposase IS4 family protein 2583588..2584913 Dickeya zeae Ech1591 8119255 YP_003004579.1 CDS Dd1591_2258 NC_012912.1 2584899 2585810 R TIGRFAM: high-affinity nickel-transporter; PFAM: high-affinity nickel-transporter; KEGG: esa:ESA_02056 hypothetical protein; high-affinity nickel-transporter complement(2584899..2585810) Dickeya zeae Ech1591 8119256 YP_003004580.1 CDS ruvC NC_012912.1 2586065 2586586 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2586065..2586586) Dickeya zeae Ech1591 8119257 YP_003004581.1 CDS Dd1591_2260 NC_012912.1 2586627 2587370 R PFAM: protein of unknown function DUF28; KEGG: eca:ECA2494 hypothetical protein; hypothetical protein complement(2586627..2587370) Dickeya zeae Ech1591 8119258 YP_003004582.1 CDS ntpA NC_012912.1 2587442 2587891 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(2587442..2587891) Dickeya zeae Ech1591 8119259 YP_003004583.1 CDS aspS NC_012912.1 2587893 2589683 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2587893..2589683) Dickeya zeae Ech1591 8119260 YP_003004584.1 CDS Dd1591_2263 NC_012912.1 2590011 2590823 D PFAM: protein of unknown function DUF72; KEGG: spe:Spro_2784 hypothetical protein; hypothetical protein 2590011..2590823 Dickeya zeae Ech1591 8118867 YP_003004585.1 CDS Dd1591_2264 NC_012912.1 2590994 2591389 D KEGG: eca:ECA2510 hypothetical protein; hypothetical protein 2590994..2591389 Dickeya zeae Ech1591 8118868 YP_003004586.1 CDS Dd1591_2265 NC_012912.1 2591540 2592283 D TIGRFAM: methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: spe:Spro_2786 putative methyltransferase; methyltransferase 2591540..2592283 Dickeya zeae Ech1591 8118869 YP_003004587.1 CDS Dd1591_2266 NC_012912.1 2592280 2593251 D TIGRFAM: methyltransferase; PFAM: methyltransferase putative; KEGG: eca:ECA2512 hypothetical protein; methyltransferase 2592280..2593251 Dickeya zeae Ech1591 8118870 YP_003004588.1 CDS Dd1591_2267 NC_012912.1 2593337 2593594 R hypothetical protein complement(2593337..2593594) Dickeya zeae Ech1591 8118871 YP_003004589.1 CDS Dd1591_2268 NC_012912.1 2593954 2594718 R PFAM: CutC family protein; KEGG: eca:ECA2518 copper homeostasis protein CutC; copper homeostasis protein CutC complement(2593954..2594718) Dickeya zeae Ech1591 8118872 YP_003004590.1 CDS Dd1591_2269 NC_012912.1 2594923 2595495 R PFAM: protein of unknown function DUF991; KEGG: eca:ECA2519 hypothetical protein; hypothetical protein complement(2594923..2595495) Dickeya zeae Ech1591 8118873 YP_003004591.1 CDS argS NC_012912.1 2596196 2597926 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2596196..2597926 Dickeya zeae Ech1591 8118874 YP_003004592.1 CDS Dd1591_2271 NC_012912.1 2598021 2599613 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: rme:Rmet_0160 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2598021..2599613) Dickeya zeae Ech1591 8118875 YP_003004593.1 CDS Dd1591_2272 NC_012912.1 2599995 2601530 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: eca:ECA2521 putative virulence factor; integral membrane protein MviN complement(2599995..2601530) Dickeya zeae Ech1591 8118876 YP_003004594.1 CDS Dd1591_2273 NC_012912.1 2601736 2602659 R PFAM: oxidoreductase domain protein; KEGG: eca:ECA2522 putative virulence factor; oxidoreductase domain-containing protein complement(2601736..2602659) Dickeya zeae Ech1591 8118877 YP_003004595.1 CDS Dd1591_2274 NC_012912.1 2602696 2603340 R PFAM: protein of unknown function DUF480; KEGG: efe:EFER_1862 hypothetical protein; hypothetical protein complement(2602696..2603340) Dickeya zeae Ech1591 8118878 YP_003004596.1 CDS Dd1591_2275 NC_012912.1 2603366 2603950 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA2524 ribosomal-protein-S5-alanine N-acetyltransferase; ribosomal-protein-S5-alanine N-acetyltransferase complement(2603366..2603950) Dickeya zeae Ech1591 8118879 YP_003004597.1 CDS Dd1591_2276 NC_012912.1 2604274 2605470 D Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 2604274..2605470 Dickeya zeae Ech1591 8118880 YP_003004598.1 CDS Dd1591_2277 NC_012912.1 2605696 2606343 D TIGRFAM: glutaredoxin, GrxB family; PFAM: glutaredoxin 2 domain protein; Glutathione S-transferase domain; KEGG: spe:Spro_2798 glutaredoxin 2; glutaredoxin, GrxB family 2605696..2606343 Dickeya zeae Ech1591 8118881 YP_003004599.1 CDS Dd1591_2278 NC_012912.1 2606472 2607035 D PFAM: protein of unknown function DUF1439; KEGG: eca:ECA2527 hypothetical protein; hypothetical protein 2606472..2607035 Dickeya zeae Ech1591 8118882 YP_003004600.1 CDS Dd1591_2279 NC_012912.1 2607083 2607685 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: eca:ECA2528 hypothetical protein; cytoplasmic chaperone TorD family protein complement(2607083..2607685) Dickeya zeae Ech1591 8118883 YP_003004601.1 CDS Dd1591_2280 NC_012912.1 2607709 2608446 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ypg:YpAngola_A2446 putative hydrolase; putative hydrolase complement(2607709..2608446) Dickeya zeae Ech1591 8118884 YP_003004602.1 CDS Dd1591_2281 NC_012912.1 2609479 2610126 R PFAM: regulatory protein TetR; KEGG: rce:RC1_2390 transcriptional regulator, TetR family protein; TetR family transcriptional regulator complement(2609479..2610126) Dickeya zeae Ech1591 8118886 YP_003004603.1 CDS Dd1591_2282 NC_012912.1 2610209 2611168 D PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; KEGG: hypothetical protein; NmrA family protein 2610209..2611168 Dickeya zeae Ech1591 8118887 YP_003004604.1 CDS Dd1591_2283 NC_012912.1 2611260 2612183 R PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: lch:Lcho_4307 AraC family transcriptional regulator; AraC family transcriptional regulator complement(2611260..2612183) Dickeya zeae Ech1591 8118888 YP_003004605.1 CDS Dd1591_2284 NC_012912.1 2612403 2613557 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bur:Bcep18194_C7286 NADH-flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 2612403..2613557 Dickeya zeae Ech1591 8118889 YP_003004606.1 CDS Dd1591_2285 NC_012912.1 2614163 2614864 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dac:Daci_4383 short chain dehydrogenase; short chain dehydrogenase complement(2614163..2614864) Dickeya zeae Ech1591 8118890 YP_003004607.1 CDS Dd1591_2286 NC_012912.1 2615038 2615796 D KEGG: sbm:Shew185_3355 hypothetical protein; hypothetical protein 2615038..2615796 Dickeya zeae Ech1591 8118891 YP_003004608.1 CDS Dd1591_2287 NC_012912.1 2616132 2616554 D hypothetical protein 2616132..2616554 Dickeya zeae Ech1591 8118892 YP_003004609.1 CDS Dd1591_2288 NC_012912.1 2616573 2617499 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bur:Bcep18194_A3790 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Cyanoalanine nitrilase complement(2616573..2617499) Dickeya zeae Ech1591 8118893 YP_003004610.1 CDS Dd1591_2289 NC_012912.1 2617601 2618536 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A3789 LysR family transcriptional regulator; LysR family transcriptional regulator 2617601..2618536 Dickeya zeae Ech1591 8118894 YP_003004611.1 CDS Dd1591_2290 NC_012912.1 2618635 2619390 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein GntR HTH; SMART: regulatory protein DeoR; KEGG: spe:Spro_2259 DeoR family transcriptional regulator; DeoR family transcriptional regulator complement(2618635..2619390) Dickeya zeae Ech1591 8118895 YP_003004612.1 CDS Dd1591_2291 NC_012912.1 2619573 2620178 D PFAM: NUDIX hydrolase; KEGG: spe:Spro_2260 NUDIX hydrolase; NUDIX hydrolase 2619573..2620178 Dickeya zeae Ech1591 8118896 YP_003004613.1 CDS Dd1591_2292 NC_012912.1 2620780 2621418 D PFAM: ribonuclease T2; KEGG: pfl:PFL_3322 ribonuclease T2 family protein, putative; ribonuclease T2 2620780..2621418 Dickeya zeae Ech1591 8118897 YP_003004614.1 CDS Dd1591_2293 NC_012912.1 2621637 2622125 D PFAM: NUDIX hydrolase; KEGG: hypothetical protein; NUDIX hydrolase 2621637..2622125 Dickeya zeae Ech1591 8118898 YP_003004615.1 CDS Dd1591_2294 NC_012912.1 2622181 2623293 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bbt:BBta_2707 putative oxidoreductase; NADH:flavin oxidoreductase/NADH oxidase complement(2622181..2623293) Dickeya zeae Ech1591 8118899 YP_003004616.1 CDS Dd1591_2295 NC_012912.1 2623394 2623798 D PFAM: helix-turn-helix HxlR type; KEGG: bbt:BBta_2706 putative transcriptional regulator; HxlR family transcriptional regulator 2623394..2623798 Dickeya zeae Ech1591 8118900 YP_003004617.1 CDS Dd1591_2296 NC_012912.1 2623841 2625496 R laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase complement(2623841..2625496) Dickeya zeae Ech1591 8118901 YP_003004618.1 CDS Dd1591_2297 NC_012912.1 2625646 2626986 R PFAM: FAD dependent oxidoreductase; KEGG: eca:ECA0052 hypothetical protein; FAD dependent oxidoreductase complement(2625646..2626986) Dickeya zeae Ech1591 8118902 YP_003004619.1 CDS Dd1591_2298 NC_012912.1 2627062 2628501 R hypothetical protein complement(2627062..2628501) Dickeya zeae Ech1591 8118903 YP_003004620.1 CDS mukB NC_012912.1 2628817 2633253 R SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB complement(2628817..2633253) Dickeya zeae Ech1591 8118904 YP_003004621.1 CDS Dd1591_2300 NC_012912.1 2633250 2633984 R acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E complement(2633250..2633984) Dickeya zeae Ech1591 8118905 YP_003004622.1 CDS Dd1591_2301 NC_012912.1 2633965 2635287 R acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F complement(2633965..2635287) Dickeya zeae Ech1591 8118906 YP_003004623.1 CDS Dd1591_2302 NC_012912.1 2635284 2636120 R involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA complement(2635284..2636120) Dickeya zeae Ech1591 8118907 YP_003004624.1 CDS Dd1591_2303 NC_012912.1 2636258 2637034 D PFAM: protein of unknown function DUF218; KEGG: eca:ECA2551 hypothetical protein; hypothetical protein 2636258..2637034 Dickeya zeae Ech1591 8118908 YP_003004625.1 CDS Dd1591_2304 NC_012912.1 2637075 2637971 R KEGG: eca:ECA2552 hypothetical protein; hypothetical protein complement(2637075..2637971) Dickeya zeae Ech1591 8118909 YP_003004626.1 CDS Dd1591_2305 NC_012912.1 2638277 2639596 R KEGG: eca:ECA2553 pectate lyase; pectate lyase complement(2638277..2639596) Dickeya zeae Ech1591 8118910 YP_003004627.1 CDS Dd1591_2306 NC_012912.1 2639881 2640633 R KEGG: eca:ECA2554 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(2639881..2640633) Dickeya zeae Ech1591 8118911 YP_003004628.1 CDS Dd1591_2307 NC_012912.1 2640630 2640812 R PFAM: protein of unknown function DUF343; KEGG: eca:ECA2555 hypothetical protein; hypothetical protein complement(2640630..2640812) Dickeya zeae Ech1591 8118912 YP_003004629.1 CDS lpxK NC_012912.1 2640852 2641865 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2640852..2641865) Dickeya zeae Ech1591 8118913 YP_003004630.1 CDS Dd1591_2309 NC_012912.1 2641862 2643610 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease protein complement(2641862..2643610) Dickeya zeae Ech1591 8118914 YP_003004631.1 CDS Dd1591_2310 NC_012912.1 2643649 2646030 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: eca:ECA2558 hypothetical protein; hypothetical protein complement(2643649..2646030) Dickeya zeae Ech1591 8118915 YP_003004632.1 CDS Dd1591_2311 NC_012912.1 2646249 2646614 D hypothetical protein 2646249..2646614 Dickeya zeae Ech1591 8118916 YP_003004633.1 CDS Dd1591_2312 NC_012912.1 2646683 2647021 R PFAM: protein of unknown function DUF496; KEGG: eca:ECA2560 hypothetical protein; hypothetical protein complement(2646683..2647021) Dickeya zeae Ech1591 8118917 YP_003004634.1 CDS sbcB NC_012912.1 2647427 2648857 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2647427..2648857 Dickeya zeae Ech1591 8118918 YP_003004635.1 CDS Dd1591_2314 NC_012912.1 2649005 2650366 R PFAM: amino acid permease-associated region; KEGG: eta:ETA_13600 putative amino acid permease; amino acid permease-like protein complement(2649005..2650366) Dickeya zeae Ech1591 8118919 YP_003004636.1 CDS Dd1591_2315 NC_012912.1 2650356 2650520 R hypothetical protein complement(2650356..2650520) Dickeya zeae Ech1591 8118920 YP_003004637.1 CDS Dd1591_2316 NC_012912.1 2650842 2651594 R PFAM: YcgR family protein; type IV pilus assembly PilZ; KEGG: eca:ECA2568 hypothetical protein; YcgR family protein complement(2650842..2651594) Dickeya zeae Ech1591 8118921 YP_003004638.1 CDS Dd1591_2317 NC_012912.1 2651821 2652729 R KEGG: eca:ECA2569 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase CitG; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase CitG complement(2651821..2652729) Dickeya zeae Ech1591 8118922 YP_003004639.1 CDS Dd1591_2318 NC_012912.1 2652707 2653249 R KEGG: eca:ECA2570 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; TIGRFAM: holo-ACP synthase CitX; PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; holo-ACP synthase CitX complement(2652707..2653249) Dickeya zeae Ech1591 8118923 YP_003004640.1 CDS Dd1591_2319 NC_012912.1 2653246 2654775 R KEGG: eca:ECA2571 citrate lyase alpha chain; TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase alpha subunit; citrate lyase subunit alpha complement(2653246..2654775) Dickeya zeae Ech1591 8118924 YP_003004641.1 CDS Dd1591_2320 NC_012912.1 2654860 2655765 R KEGG: eca:ECA2572 citrate lyase beta chain; TIGRFAM: citrate lyase, beta subunit; PFAM: HpcH/HpaI aldolase; citrate lyase subunit beta complement(2654860..2655765) Dickeya zeae Ech1591 8118925 YP_003004642.1 CDS Dd1591_2321 NC_012912.1 2655765 2656055 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(2655765..2656055) Dickeya zeae Ech1591 8118926 YP_003004643.1 CDS Dd1591_2322 NC_012912.1 2656089 2657132 R KEGG: eca:ECA2574 [citrate [pro-3s]-lyase] ligase; TIGRFAM: citrate lyase ligase; cytidyltransferase-related domain protein; PFAM: Citrate lyase ligase domain protein; GCN5-related N-acetyltransferase; cytidylyltransferase; SMART: Citrate lyase ligase domain protein; citrate lyase ligase complement(2656089..2657132) Dickeya zeae Ech1591 8118927 YP_003004644.1 CDS Dd1591_2323 NC_012912.1 2657205 2658089 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eca:ECA2575 putative fumarylacetoacetate hydrolase; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase complement(2657205..2658089) Dickeya zeae Ech1591 8118928 YP_003004645.1 CDS Dd1591_2324 NC_012912.1 2658156 2659523 R PFAM: Citrate carrier protein; KEGG: eca:ECA2576 citrate/acetate antiporter; Citrate carrier protein complement(2658156..2659523) Dickeya zeae Ech1591 8118929 YP_003004646.1 CDS Dd1591_2325 NC_012912.1 2660076 2661671 D PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; KEGG: eca:ECA2577 two-component sensor kinase; signal transduction histidine kinase regulating citrate/malate metabolism 2660076..2661671 Dickeya zeae Ech1591 8118930 YP_003004647.1 CDS Dd1591_2326 NC_012912.1 2661696 2662421 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: eca:ECA2578 two-component response regulator; response regulator receiver 2661696..2662421 Dickeya zeae Ech1591 8118931 YP_003004648.1 CDS Dd1591_2327 NC_012912.1 2662790 2664757 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA2580 putative methyl-accepting chemotaxis citrate transducer; methyl-accepting chemotaxis sensory transducer 2662790..2664757 Dickeya zeae Ech1591 8118932 YP_003004649.1 CDS Dd1591_2328 NC_012912.1 2664867 2665688 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: yen:YE2764 hypothetical protein; NAD-dependent epimerase/dehydratase complement(2664867..2665688) Dickeya zeae Ech1591 8118933 YP_003004650.1 CDS hisG NC_012912.1 2666091 2666990 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2666091..2666990 Dickeya zeae Ech1591 8118934 YP_003004651.1 CDS Dd1591_2330 NC_012912.1 2666995 2668305 D KEGG: eca:ECA2583 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase; histidinol dehydrogenase 2666995..2668305 Dickeya zeae Ech1591 8118935 YP_003004652.1 CDS Dd1591_2331 NC_012912.1 2668302 2669372 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2668302..2669372 Dickeya zeae Ech1591 8118936 YP_003004653.1 CDS Dd1591_2332 NC_012912.1 2669387 2670454 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2669387..2670454 Dickeya zeae Ech1591 8118937 YP_003004654.1 CDS hisH NC_012912.1 2670454 2671044 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2670454..2671044 Dickeya zeae Ech1591 8118938 YP_003004655.1 CDS Dd1591_2334 NC_012912.1 2671051 2671788 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2671051..2671788 Dickeya zeae Ech1591 8118939 YP_003004656.1 CDS Dd1591_2335 NC_012912.1 2671770 2672546 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2671770..2672546 Dickeya zeae Ech1591 8118940 YP_003004657.1 CDS Dd1591_2336 NC_012912.1 2672540 2673154 D TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-AMP cyclohydrolase; KEGG: eca:ECA2589 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; phosphoribosyl-ATP diphosphatase 2672540..2673154 Dickeya zeae Ech1591 8118941 YP_003004658.1 CDS Dd1591_2337 NC_012912.1 2673486 2674136 D KEGG: plu:plu3101 hypothetical protein; hypothetical protein 2673486..2674136 Dickeya zeae Ech1591 8118942 YP_003004659.1 CDS ihfB NC_012912.1 2674288 2674572 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(2674288..2674572) Dickeya zeae Ech1591 8118943 YP_003004660.1 CDS rpsA NC_012912.1 2674664 2676373 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2674664..2676373) Dickeya zeae Ech1591 8118944 YP_003004661.1 CDS cmk NC_012912.1 2676443 2677132 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(2676443..2677132) Dickeya zeae Ech1591 8118945 YP_003004662.1 CDS Dd1591_2341 NC_012912.1 2677325 2678614 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2677325..2678614) Dickeya zeae Ech1591 8118946 YP_003004663.1 CDS Dd1591_2342 NC_012912.1 2678714 2679799 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2678714..2679799) Dickeya zeae Ech1591 8120754 YP_003004664.1 CDS Dd1591_2343 NC_012912.1 2680066 2681829 D PFAM: protein of unknown function DUF181; KEGG: eca:ECA2595 hypothetical protein; hypothetical protein 2680066..2681829 Dickeya zeae Ech1591 8120755 YP_003004665.1 CDS Dd1591_2344 NC_012912.1 2682328 2683185 D TIGRFAM: formate/nitrite transporter; PFAM: formate/nitrite transporter; KEGG: eca:ECA2596 formate transporter; formate/nitrite transporter 2682328..2683185 Dickeya zeae Ech1591 8120756 YP_003004666.1 CDS Dd1591_2345 NC_012912.1 2683242 2685524 D KEGG: eca:ECA2597 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; formate acetyltransferase 2683242..2685524 Dickeya zeae Ech1591 8120757 YP_003004667.1 CDS pflA NC_012912.1 2685834 2686574 D activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2685834..2686574 Dickeya zeae Ech1591 8120758 YP_003004668.1 CDS Dd1591_2347 NC_012912.1 2687164 2688105 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eca:ECA2642 LysR family transcriptional regulator; LysR family transcriptional regulator 2687164..2688105 Dickeya zeae Ech1591 8120759 YP_003004669.1 CDS Dd1591_2348 NC_012912.1 2688115 2689263 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA2643 MFS family transporter; putative MFS family transporter protein complement(2688115..2689263) Dickeya zeae Ech1591 8120760 YP_003004670.1 CDS Dd1591_2349 NC_012912.1 2689394 2690302 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pst:PSPTO_2447 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2689394..2690302) Dickeya zeae Ech1591 8120761 YP_003004671.1 CDS Dd1591_2350 NC_012912.1 2690406 2691281 D PFAM: beta-lactamase domain protein; KEGG: bpm:BURPS1710b_3190 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 2690406..2691281 Dickeya zeae Ech1591 8120762 YP_003004672.1 CDS Dd1591_2351 NC_012912.1 2691569 2692213 D KEGG: rpi:Rpic_1321 hypothetical protein; hypothetical protein 2691569..2692213 Dickeya zeae Ech1591 8120763 YP_003004673.1 CDS Dd1591_2352 NC_012912.1 2692402 2693016 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: spe:Spro_1690 twin-argninine leader-binding protein DmsD; cytoplasmic chaperone TorD family protein complement(2692402..2693016) Dickeya zeae Ech1591 8120764 YP_003004674.1 CDS Dd1591_2353 NC_012912.1 2693303 2694598 R KEGG: eca:ECA2644 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase complement(2693303..2694598) Dickeya zeae Ech1591 8120765 YP_003004675.1 CDS Dd1591_2355 NC_012912.1 2695133 2696467 D PFAM: beta-lactamase domain protein; KEGG: rec:RHECIAT_CH0003332 putative alkyl sulfatase beta-lactamase family protein; beta-lactamase domain-containing protein 2695133..2696467 Dickeya zeae Ech1591 8120767 YP_003004676.1 CDS Dd1591_2356 NC_012912.1 2696596 2697804 D PFAM: transposase mutator type; KEGG: yps:YPTB0777 putative transposase-like protein; transposase mutator type 2696596..2697804 Dickeya zeae Ech1591 8120768 YP_003004677.1 CDS Dd1591_2357 NC_012912.1 2698227 2699531 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dac:Daci_5359 recombination factor protein RarA; recombination factor protein RarA complement(2698227..2699531) Dickeya zeae Ech1591 8120769 YP_003004678.1 CDS Dd1591_2358 NC_012912.1 2699524 2699976 R KEGG: eca:ECA2645 recombination factor protein RarA; recombination factor protein RarA complement(2699524..2699976) Dickeya zeae Ech1591 8120770 YP_003004679.1 CDS lolA NC_012912.1 2699984 2700598 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(2699984..2700598) Dickeya zeae Ech1591 8120771 YP_003004680.1 CDS Dd1591_2360 NC_012912.1 2700777 2704385 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: eca:ECA2647 cell division protein; cell division protein FtsK/SpoIIIE complement(2700777..2704385) Dickeya zeae Ech1591 8120772 YP_003004681.1 CDS Dd1591_2361 NC_012912.1 2704503 2704997 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(2704503..2704997) Dickeya zeae Ech1591 8120773 YP_003004682.1 CDS Dd1591_2362 NC_012912.1 2705499 2706455 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eca:ECA2649 thioredoxin reductase; thioredoxin reductase 2705499..2706455 Dickeya zeae Ech1591 8120774 YP_003004683.1 CDS Dd1591_2363 NC_012912.1 2706687 2708456 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 2706687..2708456 Dickeya zeae Ech1591 8120775 YP_003004684.1 CDS Dd1591_2364 NC_012912.1 2708476 2710197 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 2708476..2710197 Dickeya zeae Ech1591 8120776 YP_003004685.1 CDS Dd1591_2365 NC_012912.1 2710210 2710938 D KEGG: spe:Spro_1676 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 2710210..2710938 Dickeya zeae Ech1591 8120777 YP_003004686.1 CDS infA NC_012912.1 2711030 2711248 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2711030..2711248 Dickeya zeae Ech1591 8120778 YP_003004687.1 CDS Dd1591_2367 NC_012912.1 2711538 2713814 R KEGG: eca:ECA2656 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; ATP-dependent Clp protease, ATP-binding subunit clpA complement(2711538..2713814) Dickeya zeae Ech1591 8120779 YP_003004688.1 CDS Dd1591_2368 NC_012912.1 2713843 2714163 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: eca:ECA2657 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(2713843..2714163) Dickeya zeae Ech1591 8120780 YP_003004689.1 CDS Dd1591_2369 NC_012912.1 2714487 2714708 D KEGG: see:SNSL254_A0978 cold shock domain protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2714487..2714708 Dickeya zeae Ech1591 8120781 YP_003004690.1 CDS Dd1591_2370 NC_012912.1 2714802 2716463 R KEGG: eca:ECA2660 hypothetical protein; hypothetical protein complement(2714802..2716463) Dickeya zeae Ech1591 8120782 YP_003004691.1 CDS Dd1591_2371 NC_012912.1 2716711 2718363 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2716711..2718363 Dickeya zeae Ech1591 8120783 YP_003004692.1 CDS Dd1591_2372 NC_012912.1 2718425 2719432 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: eca:ECA2663 HCP oxidoreductase, NADH-dependent; HCP oxidoreductase, NADH-dependent 2718425..2719432 Dickeya zeae Ech1591 8120784 YP_003004693.1 CDS Dd1591_2373 NC_012912.1 2719873 2721342 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: eca:ECA2664 hypothetical protein; NAD-dependent epimerase/dehydratase 2719873..2721342 Dickeya zeae Ech1591 8120785 YP_003004694.1 CDS Dd1591_2374 NC_012912.1 2721445 2722314 R KEGG: eca:ECA2665 putative N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(2721445..2722314) Dickeya zeae Ech1591 8120786 YP_003004695.1 CDS Dd1591_2375 NC_012912.1 2722311 2722637 R PFAM: protein of unknown function DUF74; KEGG: eca:ECA2666 hypothetical protein; hypothetical protein complement(2722311..2722637) Dickeya zeae Ech1591 8120787 YP_003004696.1 CDS Dd1591_2376 NC_012912.1 2722969 2723718 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2667 arginine transporter ATP-binding subunit; ABC transporter 2722969..2723718 Dickeya zeae Ech1591 8120788 YP_003004697.1 CDS Dd1591_2377 NC_012912.1 2723736 2724467 D KEGG: eca:ECA2668 arginine-binding periplasmic protein 1; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; cationic amino acid ABC transporter periplasmic binding protein 2723736..2724467 Dickeya zeae Ech1591 8120789 YP_003004698.1 CDS Dd1591_2378 NC_012912.1 2724482 2725198 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 2724482..2725198 Dickeya zeae Ech1591 8120790 YP_003004699.1 CDS artM NC_012912.1 2725198 2725869 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 2725198..2725869 Dickeya zeae Ech1591 8120791 YP_003004700.1 CDS Dd1591_2380 NC_012912.1 2726146 2726895 D KEGG: eca:ECA2671 arginine-binding periplasmic protein 2; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; cationic amino acid ABC transporter periplasmic binding protein 2726146..2726895 Dickeya zeae Ech1591 8120792 YP_003004701.1 CDS rumB NC_012912.1 2727015 2728145 R RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase complement(2727015..2728145) Dickeya zeae Ech1591 8120793 YP_003004702.1 CDS Dd1591_2382 NC_012912.1 2728210 2728647 R KEGG: eca:ECA2673 hypothetical protein; hypothetical protein complement(2728210..2728647) Dickeya zeae Ech1591 8120794 YP_003004703.1 CDS Dd1591_2383 NC_012912.1 2728773 2729618 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2674 putrescine ABC transporter membrane protein; putrescine ABC transporter subunit membrane protein complement(2728773..2729618) Dickeya zeae Ech1591 8120795 YP_003004704.1 CDS Dd1591_2384 NC_012912.1 2729615 2730574 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2675 putrescine ABC transporter membrane protein; putrescine ABC transporter subunit membrane protein complement(2729615..2730574) Dickeya zeae Ech1591 8120796 YP_003004705.1 CDS potG NC_012912.1 2730589 2731716 R part of the PotFGHI ATP-dependent putrescine transporter; putrescine transporter ATP-binding subunit complement(2730589..2731716) Dickeya zeae Ech1591 8120797 YP_003004706.1 CDS Dd1591_2386 NC_012912.1 2731835 2732944 R PFAM: extracellular solute-binding protein family 1; KEGG: ypi:YpsIP31758_2645 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; putrescine ABC transporter subunit periplasmic-binding protein complement(2731835..2732944) Dickeya zeae Ech1591 8120798 YP_003004707.1 CDS Dd1591_2387 NC_012912.1 2733329 2733808 R KEGG: eca:ECA2678 hypothetical protein; hypothetical protein complement(2733329..2733808) Dickeya zeae Ech1591 8120799 YP_003004708.1 CDS Dd1591_2388 NC_012912.1 2733913 2734815 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: eca:ECA2679 ribosomal protein S6 modification protein; alpha-L-glutamate ligase, RimK family complement(2733913..2734815) Dickeya zeae Ech1591 8120800 YP_003004709.1 CDS Dd1591_2389 NC_012912.1 2734828 2735550 R PFAM: nitroreductase; KEGG: esa:ESA_02486 nitroreductase A; nitroreductase complement(2734828..2735550) Dickeya zeae Ech1591 8120801 YP_003004710.1 CDS Dd1591_2390 NC_012912.1 2735867 2736124 D TIGRFAM: glutaredoxin, GrxA family; PFAM: glutaredoxin; KEGG: spe:Spro_1641 glutaredoxin 1; glutaredoxin, GrxA family 2735867..2736124 Dickeya zeae Ech1591 8120802 YP_003004711.1 CDS Dd1591_2391 NC_012912.1 2736266 2736634 R KEGG: eca:ECA2682 hypothetical protein; hypothetical protein complement(2736266..2736634) Dickeya zeae Ech1591 8120803 YP_003004712.1 CDS Dd1591_2392 NC_012912.1 2736693 2736896 R hypothetical protein complement(2736693..2736896) Dickeya zeae Ech1591 8120804 YP_003004713.1 CDS Dd1591_2393 NC_012912.1 2736981 2738669 D TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; TrkA-C domain protein; KEGG: eca:ECA2683 hypothetical protein; hypothetical protein 2736981..2738669 Dickeya zeae Ech1591 8120805 YP_003004714.1 CDS Dd1591_2394 NC_012912.1 2739157 2739927 D PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: eca:ECA2685 DNA-binding transcriptional repressor DeoR; DNA-binding transcriptional repressor DeoR 2739157..2739927 Dickeya zeae Ech1591 8120806 YP_003004715.1 CDS Dd1591_2395 NC_012912.1 2739983 2741191 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: eca:ECA2686 penicillin-binding protein 6; beta-lactamase complement(2739983..2741191) Dickeya zeae Ech1591 8120807 YP_003004716.1 CDS Dd1591_2396 NC_012912.1 2741712 2742530 D PFAM: alpha/beta hydrolase fold; KEGG: bpd:BURPS668_A1921 rhamnosyltransferase 1 subunit A; alpha/beta hydrolase fold protein 2741712..2742530 Dickeya zeae Ech1591 8120808 YP_003004717.1 CDS Dd1591_2397 NC_012912.1 2742610 2743272 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2687 ABC transporter integral membrane protein; binding-protein-dependent transport systems inner membrane component complement(2742610..2743272) Dickeya zeae Ech1591 8120809 YP_003004718.1 CDS Dd1591_2398 NC_012912.1 2743265 2744281 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2688 ABC transporter ATP-binding protein; ABC transporter complement(2743265..2744281) Dickeya zeae Ech1591 8120810 YP_003004719.1 CDS Dd1591_2399 NC_012912.1 2744427 2745272 R PFAM: NLPA lipoprotein; KEGG: eca:ECA2689 putative lipoprotein; NLPA lipoprotein complement(2744427..2745272) Dickeya zeae Ech1591 8120811 YP_003004720.1 CDS Dd1591_2400 NC_012912.1 2745510 2746127 D PFAM: Glutathione S-transferase domain; KEGG: eca:ECA2690 putative glutathione S-transferase; Glutathione S-transferase domain-containing protein 2745510..2746127 Dickeya zeae Ech1591 8120812 YP_003004721.1 CDS Dd1591_2401 NC_012912.1 2746203 2747327 R PFAM: glucose sorbosone dehydrogenase; KEGG: eca:ECA2691 hypothetical protein; glucose sorbosone dehydrogenase complement(2746203..2747327) Dickeya zeae Ech1591 8120813 YP_003004722.1 CDS rimO NC_012912.1 2747580 2748983 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 2747580..2748983 Dickeya zeae Ech1591 8120814 YP_003004723.1 CDS Dd1591_2403 NC_012912.1 2749170 2749925 D PFAM: protein of unknown function DUF218; KEGG: eca:ECA2709 hypothetical protein; hypothetical protein 2749170..2749925 Dickeya zeae Ech1591 8120815 YP_003004724.1 CDS Dd1591_2404 NC_012912.1 2749926 2751074 R PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: eca:ECA2710 hypothetical protein; hypothetical protein complement(2749926..2751074) Dickeya zeae Ech1591 8120816 YP_003004725.1 CDS folE NC_012912.1 2751223 2751891 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2751223..2751891) Dickeya zeae Ech1591 8120817 YP_003004726.1 CDS Dd1591_2406 NC_012912.1 2752081 2753760 R PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: eca:ECA1509 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2752081..2753760) Dickeya zeae Ech1591 8120818 YP_003004727.1 CDS Dd1591_2407 NC_012912.1 2754119 2755786 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA2712 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2754119..2755786) Dickeya zeae Ech1591 8120819 YP_003004728.1 CDS Dd1591_2408 NC_012912.1 2756316 2757989 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: eca:ECA2712 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2756316..2757989) Dickeya zeae Ech1591 8120820 YP_003004729.1 CDS Dd1591_2409 NC_012912.1 2758686 2760305 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: eca:ECA2712 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2758686..2760305) Dickeya zeae Ech1591 8120821 YP_003004730.1 CDS Dd1591_2410 NC_012912.1 2761097 2761960 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA2713 LysR family transcriptional regulator; LysR family transcriptional regulator 2761097..2761960 Dickeya zeae Ech1591 8120822 YP_003004731.1 CDS Dd1591_2411 NC_012912.1 2762049 2763170 D TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: spe:Spro_1557 S-(hydroxymethyl)glutathione dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2762049..2763170 Dickeya zeae Ech1591 8120823 YP_003004732.1 CDS Dd1591_2412 NC_012912.1 2763191 2764036 D KEGG: spe:Spro_1556 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 2763191..2764036 Dickeya zeae Ech1591 8120824 YP_003004733.1 CDS Dd1591_2413 NC_012912.1 2764333 2764545 D KEGG: eca:ECA2717 hypothetical protein; hypothetical protein 2764333..2764545 Dickeya zeae Ech1591 8120825 YP_003004734.1 CDS Dd1591_2414 NC_012912.1 2764598 2765683 R member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein complement(2764598..2765683) Dickeya zeae Ech1591 8120826 YP_003004735.1 CDS Dd1591_2415 NC_012912.1 2765946 2767457 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2719 ABC transporter, ATP-binding protein; ABC transporter 2765946..2767457 Dickeya zeae Ech1591 8120827 YP_003004736.1 CDS Dd1591_2416 NC_012912.1 2767454 2768461 D PFAM: inner-membrane translocator; KEGG: eca:ECA2720 ABC transporter, permease protein; inner-membrane translocator 2767454..2768461 Dickeya zeae Ech1591 8120828 YP_003004737.1 CDS Dd1591_2417 NC_012912.1 2768624 2769811 D PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_3194 sugar efflux transporter; sugar efflux transporter 2768624..2769811 Dickeya zeae Ech1591 8120829 YP_003004738.1 CDS Dd1591_2418 NC_012912.1 2769893 2771365 R PFAM: amino acid permease-associated region; KEGG: eca:ECA2723 lysine transporter; lysine transporter complement(2769893..2771365) Dickeya zeae Ech1591 8120830 YP_003004739.1 CDS Dd1591_2419 NC_012912.1 2771529 2772407 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA2724 putative DNA-binding transcriptional regulator; putative DNA-binding transcriptional regulator complement(2771529..2772407) Dickeya zeae Ech1591 8120831 YP_003004740.1 CDS Dd1591_2420 NC_012912.1 2772514 2773599 D PFAM: conserved hypothetical protein; KEGG: eca:ECA2725 hypothetical protein; hypothetical protein 2772514..2773599 Dickeya zeae Ech1591 8120832 YP_003004741.1 CDS Dd1591_2421 NC_012912.1 2773669 2774520 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2773669..2774520 Dickeya zeae Ech1591 8120833 YP_003004742.1 CDS Dd1591_2422 NC_012912.1 2774566 2775276 R KEGG: she:Shewmr4_1705 hypothetical protein; hypothetical protein complement(2774566..2775276) Dickeya zeae Ech1591 8120062 YP_003004743.1 CDS Dd1591_2423 NC_012912.1 2775386 2776711 R PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_05087 hypothetical protein; transposase IS4 family protein complement(2775386..2776711) Dickeya zeae Ech1591 8120063 YP_003004744.1 CDS Dd1591_2424 NC_012912.1 2776834 2778525 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunits IIBC complement(2776834..2778525) Dickeya zeae Ech1591 8120064 YP_003004745.1 CDS fruK NC_012912.1 2778542 2779480 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase complement(2778542..2779480) Dickeya zeae Ech1591 8120065 YP_003004746.1 CDS Dd1591_2426 NC_012912.1 2779477 2780616 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein complement(2779477..2780616) Dickeya zeae Ech1591 8120066 YP_003004747.1 CDS Dd1591_2427 NC_012912.1 2780952 2782133 D TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA2730 sugar efflux transporter; sugar efflux transporter 2780952..2782133 Dickeya zeae Ech1591 8120067 YP_003004748.1 CDS Dd1591_2428 NC_012912.1 2782139 2782393 R PFAM: protein of unknown function UPF0153; KEGG: eca:ECA2731 hypothetical protein; hypothetical protein complement(2782139..2782393) Dickeya zeae Ech1591 8120068 YP_003004749.1 CDS Dd1591_2429 NC_012912.1 2782630 2783202 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2782630..2783202 Dickeya zeae Ech1591 8120069 YP_003004750.1 CDS Dd1591_2430 NC_012912.1 2783283 2784260 D PFAM: cobalamin synthesis protein P47K; KEGG: eca:ECA2733 hypothetical protein; cobalamin synthesis protein P47K 2783283..2784260 Dickeya zeae Ech1591 8120070 YP_003004751.1 CDS spr NC_012912.1 2784689 2785264 D by similarity, Spr seems to have peptidase activity; involved in thermoresistance; putative outer membrane lipoprotein 2784689..2785264 Dickeya zeae Ech1591 8120071 YP_003004752.1 CDS Dd1591_2432 NC_012912.1 2785518 2787329 D PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA2736 putative ABC transporter, periplasmic binding protein; extracellular solute-binding protein family 5 2785518..2787329 Dickeya zeae Ech1591 8120072 YP_003004753.1 CDS Dd1591_2433 NC_012912.1 2787339 2788436 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2737 putative binding-protein-dependent transporter; binding-protein-dependent transport systems inner membrane component 2787339..2788436 Dickeya zeae Ech1591 8120073 YP_003004754.1 CDS Dd1591_2434 NC_012912.1 2788433 2789458 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2738 ABC transporter permease; binding-protein-dependent transport systems inner membrane component 2788433..2789458 Dickeya zeae Ech1591 8120074 YP_003004755.1 CDS Dd1591_2435 NC_012912.1 2789460 2791052 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2739 putative ABC-transporter, ATP-binding protein; ABC transporter 2789460..2791052 Dickeya zeae Ech1591 8120075 YP_003004756.1 CDS Dd1591_2436 NC_012912.1 2791141 2791485 R KEGG: eca:ECA2740 hypothetical protein; hypothetical protein complement(2791141..2791485) Dickeya zeae Ech1591 8120076 YP_003004757.1 CDS Dd1591_2437 NC_012912.1 2791842 2793023 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system complement(2791842..2793023) Dickeya zeae Ech1591 8120077 YP_003004758.1 CDS Dd1591_2438 NC_012912.1 2793122 2793820 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A complement(2793122..2793820) Dickeya zeae Ech1591 8120078 YP_003004759.1 CDS Dd1591_2439 NC_012912.1 2794089 2794328 D KEGG: cko:CKO_01041 hypothetical protein; hypothetical protein 2794089..2794328 Dickeya zeae Ech1591 8120079 YP_003004760.1 CDS Dd1591_2440 NC_012912.1 2794328 2796103 D PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: eca:ECA2744 putative helicase; type III restriction protein res subunit 2794328..2796103 Dickeya zeae Ech1591 8120080 YP_003004761.1 CDS Dd1591_2441 NC_012912.1 2796385 2796672 D PFAM: ribosomal protein L25; KEGG: eca:ECA2745 50S ribosomal protein L25; 50S ribosomal protein L25 2796385..2796672 Dickeya zeae Ech1591 8120081 YP_003004762.1 CDS Dd1591_2442 NC_012912.1 2796860 2798077 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA2430 hypothetical protein; major facilitator superfamily protein complement(2796860..2798077) Dickeya zeae Ech1591 8120082 YP_003004763.1 CDS Dd1591_2443 NC_012912.1 2798274 2799011 R PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; KEGG: cko:CKO_00419 hypothetical protein; LytTR family two component transcriptional regulator complement(2798274..2799011) Dickeya zeae Ech1591 8120083 YP_003004764.1 CDS Dd1591_2444 NC_012912.1 2799037 2800737 R KEGG: eta:ETA_11160 putative sensor protein; PFAM: histidine kinase internal region; GAF domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; signal transduction histidine kinase, LytS complement(2799037..2800737) Dickeya zeae Ech1591 8120084 YP_003004765.1 CDS Dd1591_2445 NC_012912.1 2800884 2801894 R PFAM: 37kDa nucleoid-associated protein; KEGG: eca:ECA2747 nucleoid-associated protein NdpA; nucleoid-associated protein NdpA complement(2800884..2801894) Dickeya zeae Ech1591 8120085 YP_003004766.1 CDS Dd1591_2446 NC_012912.1 2802057 2802287 D PFAM: protein of unknown function DUF1414; KEGG: spe:Spro_3256 hypothetical protein; hypothetical protein 2802057..2802287 Dickeya zeae Ech1591 8120086 YP_003004767.1 CDS Dd1591_2447 NC_012912.1 2802301 2804073 D PFAM: sulfatase; KEGG: eca:ECA2749 putative sulphatase; sulfatase 2802301..2804073 Dickeya zeae Ech1591 8120087 YP_003004768.1 CDS Dd1591_2449 NC_012912.1 2805841 2806743 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: psb:Psyr_4923 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(2805841..2806743) Dickeya zeae Ech1591 8120090 YP_003004769.1 CDS Dd1591_2450 NC_012912.1 2806881 2807627 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppf:Pput_1853 short chain dehydrogenase; short chain dehydrogenase 2806881..2807627 Dickeya zeae Ech1591 8120091 YP_003004770.1 CDS Dd1591_2451 NC_012912.1 2807707 2808381 D PFAM: Glutathione S-transferase domain; KEGG: ara:Arad_7543 glutathione S-transferase protein; Glutathione S-transferase domain-containing protein 2807707..2808381 Dickeya zeae Ech1591 8120092 YP_003004771.1 CDS Dd1591_2452 NC_012912.1 2808631 2808876 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: eca:ECA2757 hypothetical protein; CopG family transcriptional regulator 2808631..2808876 Dickeya zeae Ech1591 8120093 YP_003004772.1 CDS Dd1591_2453 NC_012912.1 2808866 2809150 D PFAM: plasmid stabilization system; KEGG: eca:ECA2758 hypothetical protein; plasmid stabilization system protein 2808866..2809150 Dickeya zeae Ech1591 8120094 YP_003004773.1 CDS Dd1591_2454 NC_012912.1 2809353 2809835 D PFAM: glutathione peroxidase; KEGG: kpn:KPN_01190 putative glutathione peroxidase; Peroxiredoxin 2809353..2809835 Dickeya zeae Ech1591 8120095 YP_003004774.1 CDS Dd1591_2455 NC_012912.1 2809977 2810324 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: efe:EFER_2615 hypothetical protein; hypothetical protein complement(2809977..2810324) Dickeya zeae Ech1591 8120096 YP_003004775.1 CDS Dd1591_2456 NC_012912.1 2810659 2810781 D hypothetical protein 2810659..2810781 Dickeya zeae Ech1591 8120097 YP_003004776.1 CDS Dd1591_2457 NC_012912.1 2811045 2811245 D hypothetical protein 2811045..2811245 Dickeya zeae Ech1591 8120098 YP_003004777.1 CDS Dd1591_2458 NC_012912.1 2811351 2812106 R PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: bcm:Bcenmc03_2495 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2811351..2812106) Dickeya zeae Ech1591 8120099 YP_003004778.1 CDS Dd1591_2459 NC_012912.1 2812223 2812819 D PFAM: regulatory protein TetR; KEGG: bcm:Bcenmc03_2496 TetR family transcriptional regulator; TetR family transcriptional regulator 2812223..2812819 Dickeya zeae Ech1591 8120100 YP_003004779.1 CDS Dd1591_2460 NC_012912.1 2812831 2812929 D hypothetical protein 2812831..2812929 Dickeya zeae Ech1591 8120101 YP_003004780.1 CDS Dd1591_2461 NC_012912.1 2813193 2813624 R KEGG: ecr:ECIAI1_3650 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase complement(2813193..2813624) Dickeya zeae Ech1591 8120102 YP_003004781.1 CDS Dd1591_2462 NC_012912.1 2813715 2814998 R TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: hypothetical protein LOC754318; arsenical pump membrane protein complement(2813715..2814998) Dickeya zeae Ech1591 8120103 YP_003004782.1 CDS Dd1591_2463 NC_012912.1 2815051 2815383 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: yen:YE3472 DNA-binding transcriptional repressor ArsR; ArsR family transcriptional regulator complement(2815051..2815383) Dickeya zeae Ech1591 8120104 YP_003004783.1 CDS Dd1591_2464 NC_012912.1 2816290 2816640 D PFAM: protein of unknown function DUF1304; KEGG: kpn:KPN_01507 hypothetical protein; hypothetical protein 2816290..2816640 Dickeya zeae Ech1591 8120105 YP_003004784.1 CDS Dd1591_2465 NC_012912.1 2816728 2816979 D hypothetical protein 2816728..2816979 Dickeya zeae Ech1591 8120106 YP_003004785.1 CDS Dd1591_2466 NC_012912.1 2817013 2817117 D hypothetical protein 2817013..2817117 Dickeya zeae Ech1591 8120107 YP_003004786.1 CDS Dd1591_2467 NC_012912.1 2817272 2817805 D KEGG: hin:HI1492 hypothetical protein; hypothetical protein 2817272..2817805 Dickeya zeae Ech1591 8120108 YP_003004787.1 CDS Dd1591_2468 NC_012912.1 2817879 2818220 R PFAM: GlpM family protein; KEGG: eca:ECA0108 hypothetical protein; GlpM family protein complement(2817879..2818220) Dickeya zeae Ech1591 8120109 YP_003004788.1 CDS Dd1591_2469 NC_012912.1 2818504 2819808 D outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; putative pectinesterase 2818504..2819808 Dickeya zeae Ech1591 8120110 YP_003004789.1 CDS Dd1591_2470 NC_012912.1 2819878 2821143 R PFAM: secretion protein HlyD family protein; KEGG: plu:plu2645 hypothetical protein; secretion protein HlyD family protein complement(2819878..2821143) Dickeya zeae Ech1591 8120111 YP_003004790.1 CDS Dd1591_2471 NC_012912.1 2821133 2822578 R PFAM: outer membrane efflux protein; KEGG: plu:plu2646 hypothetical protein; outer membrane efflux protein complement(2821133..2822578) Dickeya zeae Ech1591 8120112 YP_003004791.1 CDS Dd1591_2472 NC_012912.1 2822568 2823749 R PFAM: protein of unknown function DUF214; KEGG: plu:plu2647 hypothetical protein; hypothetical protein complement(2822568..2823749) Dickeya zeae Ech1591 8120113 YP_003004792.1 CDS Dd1591_2473 NC_012912.1 2823757 2824500 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2947 ABC transporter, ATP-binding protein; ABC transporter complement(2823757..2824500) Dickeya zeae Ech1591 8120114 YP_003004793.1 CDS Dd1591_2474 NC_012912.1 2825123 2825491 R hypothetical protein complement(2825123..2825491) Dickeya zeae Ech1591 8120115 YP_003004794.1 CDS Dd1591_2475 NC_012912.1 2825896 2826384 R PFAM: heat shock protein Hsp20; KEGG: set:SEN1800 putative heat shock protein; heat shock protein Hsp20 complement(2825896..2826384) Dickeya zeae Ech1591 8120116 YP_003004795.1 CDS Dd1591_2476 NC_012912.1 2826553 2827848 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bmj:BMULJ_02890 hypothetical protein; cytosine/purines uracil thiamine allantoin permease complement(2826553..2827848) Dickeya zeae Ech1591 8120117 YP_003004796.1 CDS Dd1591_2477 NC_012912.1 2828047 2829054 R KEGG: pap:PSPA7_0599 biotin-dependent carboxylase domain-containing protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2; urea amidolyase related protein complement(2828047..2829054) Dickeya zeae Ech1591 8120118 YP_003004797.1 CDS Dd1591_2478 NC_012912.1 2829041 2829925 R PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: ppg:PputGB1_2861 allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 complement(2829041..2829925) Dickeya zeae Ech1591 8120119 YP_003004798.1 CDS Dd1591_2479 NC_012912.1 2829927 2831312 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(2829927..2831312) Dickeya zeae Ech1591 8120120 YP_003004799.1 CDS Dd1591_2480 NC_012912.1 2831366 2831614 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: vei:Veis_4578 hypothetical protein; biotin/lipoyl attachment domain-containing protein complement(2831366..2831614) Dickeya zeae Ech1591 8120121 YP_003004800.1 CDS Dd1591_2481 NC_012912.1 2831644 2832426 R PFAM: LamB/YcsF family protein; KEGG: pae:PA0492 hypothetical protein; hypothetical protein complement(2831644..2832426) Dickeya zeae Ech1591 8120122 YP_003004801.1 CDS Dd1591_2482 NC_012912.1 2832555 2833469 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: psp:PSPPH_2444 LysR family transcriptional regulator; LysR family transcriptional regulator 2832555..2833469 Dickeya zeae Ech1591 8120123 YP_003004802.1 CDS Dd1591_2483 NC_012912.1 2833466 2834647 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA2763 transport protein; major facilitator superfamily protein complement(2833466..2834647) Dickeya zeae Ech1591 8120124 YP_003004803.1 CDS Dd1591_2484 NC_012912.1 2834745 2835236 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmn:BMA10247_0906 MarR family transcriptional regulator; MarR family transcriptional regulator 2834745..2835236 Dickeya zeae Ech1591 8120125 YP_003004804.1 CDS ompX NC_012912.1 2835353 2835865 R OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X complement(2835353..2835865) Dickeya zeae Ech1591 8120126 YP_003004805.1 CDS Dd1591_2486 NC_012912.1 2836238 2837119 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA2765 threonine and homoserine efflux system; hypothetical protein 2836238..2837119 Dickeya zeae Ech1591 8120127 YP_003004806.1 CDS Dd1591_2487 NC_012912.1 2837319 2837822 D binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 2837319..2837822 Dickeya zeae Ech1591 8120128 YP_003004807.1 CDS glnH NC_012912.1 2838326 2839072 D similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 2838326..2839072 Dickeya zeae Ech1591 8120129 YP_003004808.1 CDS glnP NC_012912.1 2839176 2839835 D similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease protein 2839176..2839835 Dickeya zeae Ech1591 8120130 YP_003004809.1 CDS glnQ NC_012912.1 2839832 2840554 D similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 2839832..2840554 Dickeya zeae Ech1591 8120131 YP_003004810.1 CDS Dd1591_2491 NC_012912.1 2840812 2842512 D PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: afw:Anae109_2327 cell surface receptor IPT/TIG domain-containing protein; Fibronectin type III domain-containing protein 2840812..2842512 Dickeya zeae Ech1591 8120132 YP_003004811.1 CDS Dd1591_2492 NC_012912.1 2842650 2843927 R PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: eta:ETA_04650 putative phosphatase; phosphoesterase PA-phosphatase related complement(2842650..2843927) Dickeya zeae Ech1591 8120133 YP_003004812.1 CDS Dd1591_2493 NC_012912.1 2844186 2846051 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: eca:ECA2771 putative peptidase; peptidase M3A and M3B thimet/oligopeptidase F complement(2844186..2846051) Dickeya zeae Ech1591 8120134 YP_003004813.1 CDS Dd1591_2494 NC_012912.1 2846082 2847050 R PFAM: Glycosyl transferase, family 3-like; KEGG: eca:ECA2772 hypothetical protein; glycosyl transferase family protein complement(2846082..2847050) Dickeya zeae Ech1591 8120135 YP_003004814.1 CDS dinG NC_012912.1 2847258 2849363 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(2847258..2849363) Dickeya zeae Ech1591 8120136 YP_003004815.1 CDS Dd1591_2496 NC_012912.1 2849612 2849719 D KEGG: ecz:ECS88_2271 hypothetical protein; hypothetical protein 2849612..2849719 Dickeya zeae Ech1591 8120137 YP_003004816.1 CDS Dd1591_2497 NC_012912.1 2849836 2852145 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: eca:ECA2790 periplasmic beta-glucosidase; glycoside hydrolase family 3 domain-containing protein complement(2849836..2852145) Dickeya zeae Ech1591 8120138 YP_003004817.1 CDS Dd1591_2498 NC_012912.1 2852355 2853695 R PFAM: aminotransferase class-III; KEGG: bpy:Bphyt_0048 aminotransferase class-III; aminotransferase class-III complement(2852355..2853695) Dickeya zeae Ech1591 8120139 YP_003004818.1 CDS Dd1591_2499 NC_012912.1 2854113 2854889 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: eta:ETA_34310 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 2854113..2854889 Dickeya zeae Ech1591 8120140 YP_003004819.1 CDS Dd1591_2500 NC_012912.1 2855020 2855706 D PFAM: Glutathione S-transferase domain; KEGG: eca:ECA2791 putative glutathione S-transferase; Glutathione S-transferase domain-containing protein 2855020..2855706 Dickeya zeae Ech1591 8120141 YP_003004820.1 CDS pbpG NC_012912.1 2855725 2856684 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2855725..2856684) Dickeya zeae Ech1591 8120354 YP_003004821.1 CDS Dd1591_2502 NC_012912.1 2856927 2857466 R TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: eca:ECA2795 adenylate cyclase; adenylyl cyclase CyaB complement(2856927..2857466) Dickeya zeae Ech1591 8120355 YP_003004822.1 CDS Dd1591_2503 NC_012912.1 2858240 2858647 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pae:PA1129 fosfomycin resistance protein; Glutathione transferase complement(2858240..2858647) Dickeya zeae Ech1591 8120356 YP_003004823.1 CDS Dd1591_2504 NC_012912.1 2858753 2859688 R PFAM: dihydrouridine synthase DuS; KEGG: kpe:KPK_1587 tRNA-dihydrouridine synthase C; tRNA-dihydrouridine synthase C complement(2858753..2859688) Dickeya zeae Ech1591 8120357 YP_003004824.1 CDS Dd1591_2505 NC_012912.1 2859838 2861433 R PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA2801 periplasmic dipeptide transport protein; extracellular solute-binding protein family 5 complement(2859838..2861433) Dickeya zeae Ech1591 8120358 YP_003004825.1 CDS Dd1591_2506 NC_012912.1 2861761 2863002 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 2861761..2863002 Dickeya zeae Ech1591 8120359 YP_003004826.1 CDS Dd1591_2507 NC_012912.1 2862994 2863869 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: spe:Spro_2337 AraC family transcriptional regulator; AraC family transcriptional regulator complement(2862994..2863869) Dickeya zeae Ech1591 8120360 YP_003004827.1 CDS Dd1591_2508 NC_012912.1 2864022 2864984 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: swi:Swit_0727 hypothetical protein; hypothetical protein complement(2864022..2864984) Dickeya zeae Ech1591 8120361 YP_003004828.1 CDS Dd1591_2509 NC_012912.1 2865356 2866252 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: kpn:KPN_01938 putative transmembrane protein; hypothetical protein 2865356..2866252 Dickeya zeae Ech1591 8120362 YP_003004829.1 CDS Dd1591_2510 NC_012912.1 2866257 2867624 R PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: eca:ECA2805 ATP-dependent RNA helicase RhlE; DEAD/DEAH box helicase domain-containing protein complement(2866257..2867624) Dickeya zeae Ech1591 8120363 YP_003004830.1 CDS Dd1591_2511 NC_012912.1 2868074 2869078 D PFAM: secretion protein HlyD family protein; KEGG: spe:Spro_1329 hypothetical protein; hypothetical protein 2868074..2869078 Dickeya zeae Ech1591 8120364 YP_003004831.1 CDS Dd1591_2512 NC_012912.1 2869068 2870819 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_1328 ABC transporter-related protein; ABC transporter 2869068..2870819 Dickeya zeae Ech1591 8120365 YP_003004832.1 CDS Dd1591_2513 NC_012912.1 2870803 2871948 D PFAM: ABC-2 type transporter; KEGG: yen:YE2893 hypothetical protein; ABC transporter 2870803..2871948 Dickeya zeae Ech1591 8120366 YP_003004833.1 CDS Dd1591_2514 NC_012912.1 2872007 2873131 D PFAM: ABC-2 type transporter; KEGG: spe:Spro_1326 ABC-2 type transporter; ABC transporter 2872007..2873131 Dickeya zeae Ech1591 8120367 YP_003004834.1 CDS Dd1591_2515 NC_012912.1 2873223 2873993 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: kpn:KPN_00818 putative DNase; Endonuclease/exonuclease/phosphatase 2873223..2873993 Dickeya zeae Ech1591 8120368 YP_003004835.1 CDS Dd1591_2516 NC_012912.1 2873990 2875195 D PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: esa:ESA_02556 cardiolipin synthase 2; cardiolipin synthase 2 2873990..2875195 Dickeya zeae Ech1591 8120369 YP_003004836.1 CDS Dd1591_2517 NC_012912.1 2875706 2876674 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sgl:SG1481 transposase; transposase IS116/IS110/IS902 family protein 2875706..2876674 Dickeya zeae Ech1591 8120370 YP_003004837.1 CDS Dd1591_2518 NC_012912.1 2876916 2877626 R PFAM: protein of unknown function UPF0005; KEGG: eca:ECA2812 hypothetical protein; hypothetical protein complement(2876916..2877626) Dickeya zeae Ech1591 8120371 YP_003004838.1 CDS Dd1591_2519 NC_012912.1 2877780 2878814 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: spe:Spro_2536 ABC transporter-related protein; ABC transporter complement(2877780..2878814) Dickeya zeae Ech1591 8120372 YP_003004839.1 CDS Dd1591_2520 NC_012912.1 2878811 2880403 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2535 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2878811..2880403) Dickeya zeae Ech1591 8120373 YP_003004840.1 CDS Dd1591_2521 NC_012912.1 2880438 2881454 R PFAM: extracellular solute-binding protein family 1; KEGG: spe:Spro_2534 extracellular solute-binding protein; extracellular solute-binding protein family 1 complement(2880438..2881454) Dickeya zeae Ech1591 8120374 YP_003004841.1 CDS moaE NC_012912.1 2881698 2882150 R catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE complement(2881698..2882150) Dickeya zeae Ech1591 8120375 YP_003004842.1 CDS Dd1591_2523 NC_012912.1 2882154 2882399 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: eca:ECA2814 molybdopterin synthase small subunit; molybdopterin converting factor subunit 1 complement(2882154..2882399) Dickeya zeae Ech1591 8120376 YP_003004843.1 CDS Dd1591_2524 NC_012912.1 2882396 2882878 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: eca:ECA2815 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C complement(2882396..2882878) Dickeya zeae Ech1591 8120377 YP_003004844.1 CDS Dd1591_2525 NC_012912.1 2882885 2883397 R TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: eca:ECA2816 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(2882885..2883397) Dickeya zeae Ech1591 8120378 YP_003004845.1 CDS moaA NC_012912.1 2883442 2884464 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(2883442..2884464) Dickeya zeae Ech1591 8120379 YP_003004846.1 CDS Dd1591_2527 NC_012912.1 2884859 2885053 R KEGG: ent:Ent638_2133 hypothetical protein; hypothetical protein complement(2884859..2885053) Dickeya zeae Ech1591 8120380 YP_003004847.1 CDS Dd1591_2528 NC_012912.1 2885053 2886060 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: eta:ETA_23730 ubiquinol oxidase subunit II, cyanide insensitive; cytochrome d ubiquinol oxidase subunit II complement(2885053..2886060) Dickeya zeae Ech1591 8120381 YP_003004848.1 CDS Dd1591_2529 NC_012912.1 2886062 2887477 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: eta:ETA_23720 ubiquinol oxidase subunit I, cyanide insensitive; cytochrome bd ubiquinol oxidase subunit I complement(2886062..2887477) Dickeya zeae Ech1591 8120382 YP_003004849.1 CDS Dd1591_2530 NC_012912.1 2887608 2887751 D hypothetical protein 2887608..2887751 Dickeya zeae Ech1591 8120383 YP_003004850.1 CDS Dd1591_2531 NC_012912.1 2887819 2887938 D hypothetical protein 2887819..2887938 Dickeya zeae Ech1591 8120384 YP_003004851.1 CDS Dd1591_2532 NC_012912.1 2887975 2888223 D hypothetical protein 2887975..2888223 Dickeya zeae Ech1591 8120385 YP_003004852.1 CDS Dd1591_2533 NC_012912.1 2888247 2889167 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: eca:ECA2818 hypothetical protein; hypothetical protein 2888247..2889167 Dickeya zeae Ech1591 8120386 YP_003004853.1 CDS Dd1591_2534 NC_012912.1 2889190 2889405 R KEGG: eca:ECA3982 hypothetical protein; hypothetical protein complement(2889190..2889405) Dickeya zeae Ech1591 8120387 YP_003004854.1 CDS Dd1591_2535 NC_012912.1 2889497 2891509 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2889497..2891509) Dickeya zeae Ech1591 8120388 YP_003004855.1 CDS Dd1591_2536 NC_012912.1 2892242 2892922 R KEGG: eca:ECA2822 dithiobiotin synthetase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase complement(2892242..2892922) Dickeya zeae Ech1591 8120389 YP_003004856.1 CDS Dd1591_2537 NC_012912.1 2892915 2893697 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: eca:ECA2823 biotin synthesis protein; biotin biosynthesis protein BioC complement(2892915..2893697) Dickeya zeae Ech1591 8120390 YP_003004857.1 CDS Dd1591_2538 NC_012912.1 2893684 2894838 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(2893684..2894838) Dickeya zeae Ech1591 8120391 YP_003004858.1 CDS Dd1591_2539 NC_012912.1 2894839 2895879 R KEGG: eca:ECA2825 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2894839..2895879) Dickeya zeae Ech1591 8120392 YP_003004859.1 CDS Dd1591_2540 NC_012912.1 2895966 2897249 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 2895966..2897249 Dickeya zeae Ech1591 8120393 YP_003004860.1 CDS Dd1591_2541 NC_012912.1 2897679 2899655 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: avi:Avi_0107 beta-glucosidase protein; glycoside hydrolase family 3 domain-containing protein 2897679..2899655 Dickeya zeae Ech1591 8120394 YP_003004861.1 CDS Dd1591_2542 NC_012912.1 2899797 2900207 D PFAM: LrgA family protein; KEGG: eca:ECA2828 hypothetical protein; hypothetical protein 2899797..2900207 Dickeya zeae Ech1591 8120395 YP_003004862.1 CDS Dd1591_2543 NC_012912.1 2900207 2900902 D PFAM: LrgB family protein; KEGG: eca:ECA2829 hypothetical protein; hypothetical protein 2900207..2900902 Dickeya zeae Ech1591 8120396 YP_003004863.1 CDS Dd1591_2544 NC_012912.1 2901021 2902349 D KEGG: bph:Bphy_0250 hypothetical protein; hypothetical protein 2901021..2902349 Dickeya zeae Ech1591 8120397 YP_003004864.1 CDS Dd1591_2545 NC_012912.1 2902539 2903426 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2902539..2903426 Dickeya zeae Ech1591 8120398 YP_003004865.1 CDS Dd1591_2546 NC_012912.1 2903703 2905400 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 2903703..2905400 Dickeya zeae Ech1591 8120399 YP_003004866.1 CDS Dd1591_2547 NC_012912.1 2905602 2906837 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: eca:ECA2836 molybdopterin biosynthesis protein MoeA; molybdenum cofactor synthesis domain-containing protein 2905602..2906837 Dickeya zeae Ech1591 8120400 YP_003004867.1 CDS Dd1591_2548 NC_012912.1 2906837 2907595 D TIGRFAM: molybdopterin synthase sulfurylase MoeB; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: eca:ECA2837 molybdopterin biosynthesis protein MoeB; molybdopterin synthase sulfurylase MoeB 2906837..2907595 Dickeya zeae Ech1591 8120401 YP_003004868.1 CDS Dd1591_2549 NC_012912.1 2907750 2908145 D PFAM: thioesterase superfamily protein; KEGG: pmr:PMI1691 thioesterase superfamilyl protein; thioesterase superfamily protein 2907750..2908145 Dickeya zeae Ech1591 8120402 YP_003004869.1 CDS Dd1591_2550 NC_012912.1 2908248 2909300 D PFAM: glycosyl transferase family 2; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: esa:ESA_04142 hypothetical protein; glycosyl transferase family 2 2908248..2909300 Dickeya zeae Ech1591 8120403 YP_003004870.1 CDS Dd1591_2551 NC_012912.1 2909728 2910282 D PFAM: flavodoxin/nitric oxide synthase; KEGG: elf:LF82_p421 hypothetical protein; flavodoxin/nitric oxide synthase 2909728..2910282 Dickeya zeae Ech1591 8120404 YP_003004871.1 CDS Dd1591_2552 NC_012912.1 2910342 2910515 R PFAM: protein of unknown function UPF0057; KEGG: kpe:KPK_2957 hypothetical protein; hypothetical protein complement(2910342..2910515) Dickeya zeae Ech1591 8120405 YP_003004872.1 CDS Dd1591_2553 NC_012912.1 2910671 2912857 R PFAM: coagulation factor 5/8 type domain protein; KEGG: eca:ECA1186 hypothetical protein; coagulation factor 5/8 type domain-containing protein complement(2910671..2912857) Dickeya zeae Ech1591 8120406 YP_003004873.1 CDS Dd1591_2554 NC_012912.1 2912944 2913291 R KEGG: ecs:ECs1979 hypothetical protein; hypothetical protein complement(2912944..2913291) Dickeya zeae Ech1591 8120407 YP_003004874.1 CDS Dd1591_2555 NC_012912.1 2913631 2915841 R PFAM: coagulation factor 5/8 type domain protein; KEGG: eca:ECA1185 hypothetical protein; coagulation factor 5/8 type domain-containing protein complement(2913631..2915841) Dickeya zeae Ech1591 8120408 YP_003004875.1 CDS Dd1591_2556 NC_012912.1 2915928 2916275 R KEGG: ecs:ECs1979 hypothetical protein; hypothetical protein complement(2915928..2916275) Dickeya zeae Ech1591 8120409 YP_003004876.1 CDS Dd1591_2557 NC_012912.1 2916858 2917625 D PFAM: protein of unknown function DUF980; KEGG: yen:YE2610 hypothetical protein; hypothetical protein 2916858..2917625 Dickeya zeae Ech1591 8120411 YP_003004877.1 CDS Dd1591_2558 NC_012912.1 2918466 2918984 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein; Hcp1 family type VI secretion system effector 2918466..2918984 Dickeya zeae Ech1591 8120413 YP_003004878.1 CDS Dd1591_2559 NC_012912.1 2919149 2921005 D TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA2867 putative rhs accessory genetic element; type VI secretion system Vgr family protein 2919149..2921005 Dickeya zeae Ech1591 8120414 YP_003004879.1 CDS Dd1591_2560 NC_012912.1 2921031 2921555 D PFAM: PAAR repeat-containing protein; KEGG: asa:ASA_3828 hypothetical protein; PAAR repeat-containing protein 2921031..2921555 Dickeya zeae Ech1591 8120415 YP_003004880.1 CDS Dd1591_2561 NC_012912.1 2921555 2922445 D KEGG: ses:SARI_02589 hypothetical protein; hypothetical protein 2921555..2922445 Dickeya zeae Ech1591 8120416 YP_003004881.1 CDS Dd1591_2562 NC_012912.1 2922442 2922867 D KEGG: aha:AHA_2048 hypothetical protein; hypothetical protein 2922442..2922867 Dickeya zeae Ech1591 8120417 YP_003004882.1 CDS Dd1591_2564 NC_012912.1 2923017 2923901 R PFAM: Integrase catalytic region; KEGG: yps:YPTB1892 putative transposase; Integrase catalytic region complement(2923017..2923901) Dickeya zeae Ech1591 8120419 YP_003004883.1 CDS Dd1591_2567 NC_012912.1 2925360 2925842 R PFAM: transposase IS3/IS911 family protein; KEGG: ypg:YpAngola_A2064 hypothetical protein; transposase IS3/IS911 family protein complement(2925360..2925842) Dickeya zeae Ech1591 8120422 YP_003004884.1 CDS Dd1591_2568 NC_012912.1 2925892 2928687 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: eca:ECA4278 rhs-family protein; YD repeat protein 2925892..2928687 Dickeya zeae Ech1591 8120423 YP_003004885.1 CDS Dd1591_2569 NC_012912.1 2928687 2929169 D PFAM: pentapeptide repeat protein; KEGG: pae:PA2461 hypothetical protein; pentapeptide repeat protein 2928687..2929169 Dickeya zeae Ech1591 8120424 YP_003004886.1 CDS Dd1591_2570 NC_012912.1 2929414 2929575 R KEGG: eca:ECA3392 hypothetical protein; hypothetical protein complement(2929414..2929575) Dickeya zeae Ech1591 8120425 YP_003004887.1 CDS Dd1591_2572 NC_012912.1 2930088 2930318 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu4299 hypothetical protein; XRE family transcriptional regulator 2930088..2930318 Dickeya zeae Ech1591 8120427 YP_003004888.1 CDS Dd1591_2573 NC_012912.1 2930396 2930629 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu4299 hypothetical protein; XRE family transcriptional regulator 2930396..2930629 Dickeya zeae Ech1591 8120428 YP_003004889.1 CDS Dd1591_2575 NC_012912.1 2930931 2931332 D PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; KEGG: eca:ECA1665 DNA-binding protein Hns; histone family protein nucleoid-structuring protein H-NS 2930931..2931332 Dickeya zeae Ech1591 8120430 YP_003004890.1 CDS Dd1591_2576 NC_012912.1 2931325 2931594 R KEGG: ecc:c0291 hypothetical protein; hypothetical protein complement(2931325..2931594) Dickeya zeae Ech1591 8120431 YP_003004891.1 CDS Dd1591_2577 NC_012912.1 2931861 2932412 R PFAM: protein of unknown function DUF606; KEGG: kpe:KPK_2583 hypothetical protein; hypothetical protein complement(2931861..2932412) Dickeya zeae Ech1591 8120432 YP_003004892.1 CDS Dd1591_2578 NC_012912.1 2932422 2932856 R PFAM: protein of unknown function DUF606; KEGG: ent:Ent638_1093 hypothetical protein; hypothetical protein complement(2932422..2932856) Dickeya zeae Ech1591 8120433 YP_003004893.1 CDS Dd1591_2579 NC_012912.1 2932956 2933891 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpe:KPK_2581 transcriptional regulator, LysR family; LysR family transcriptional regulator 2932956..2933891 Dickeya zeae Ech1591 8117987 YP_003004894.1 CDS Dd1591_2580 NC_012912.1 2934162 2934446 D KEGG: vco:VC0395_0742 transcriptional regulator, CopG family; CopG family transcriptional regulator 2934162..2934446 Dickeya zeae Ech1591 8117988 YP_003004895.1 CDS Dd1591_2581 NC_012912.1 2934443 2934754 D PFAM: plasmid stabilization system; KEGG: rle:pRL110045 hypothetical protein; plasmid stabilization system protein 2934443..2934754 Dickeya zeae Ech1591 8117989 YP_003004896.1 CDS Dd1591_2583 NC_012912.1 2935044 2936033 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sea:SeAg_B4544 invertase; transposase IS116/IS110/IS902 family protein complement(2935044..2936033) Dickeya zeae Ech1591 8117991 YP_003004897.1 CDS Dd1591_2585 NC_012912.1 2936415 2937149 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4478 amino acid ABC transporter, ATP-binding protein; ABC transporter complement(2936415..2937149) Dickeya zeae Ech1591 8117993 YP_003004898.1 CDS Dd1591_2586 NC_012912.1 2937146 2937916 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4479 amino acid ABC transporter permease; polar amino acid ABC transporter permease complement(2937146..2937916) Dickeya zeae Ech1591 8117994 YP_003004899.1 CDS Dd1591_2587 NC_012912.1 2937922 2938617 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4480 amino acid ABC transporter permease; polar amino acid ABC transporter permease complement(2937922..2938617) Dickeya zeae Ech1591 8117995 YP_003004900.1 CDS Dd1591_2588 NC_012912.1 2938640 2939392 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: eca:ECA4481 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2938640..2939392) Dickeya zeae Ech1591 8117996 YP_003004901.1 CDS Dd1591_2589 NC_012912.1 2939515 2939937 R KEGG: eca:ECA4482 hypothetical protein; hypothetical protein complement(2939515..2939937) Dickeya zeae Ech1591 8117997 YP_003004902.1 CDS Dd1591_2590 NC_012912.1 2940055 2940978 R Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation; nitrogen assimilation transcriptional regulator complement(2940055..2940978) Dickeya zeae Ech1591 8117998 YP_003004903.1 CDS Dd1591_2591 NC_012912.1 2941323 2942525 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2941323..2942525 Dickeya zeae Ech1591 8117999 YP_003004904.1 CDS Dd1591_2592 NC_012912.1 2942818 2943588 R PFAM: LamB/YcsF family protein; KEGG: eca:ECA4486 hypothetical protein; LamB/YcsF family protein complement(2942818..2943588) Dickeya zeae Ech1591 8118000 YP_003004905.1 CDS Dd1591_2593 NC_012912.1 2943595 2944575 R KEGG: eca:ECA4487 putative allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2; urea amidolyase related protein complement(2943595..2944575) Dickeya zeae Ech1591 8118001 YP_003004906.1 CDS Dd1591_2594 NC_012912.1 2944572 2945261 R PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: eca:ECA4488 putative allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 complement(2944572..2945261) Dickeya zeae Ech1591 8118002 YP_003004907.1 CDS Dd1591_2595 NC_012912.1 2945269 2946105 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA4489 putative extracellular solute-binding protein; extracellular solute-binding protein family 3 complement(2945269..2946105) Dickeya zeae Ech1591 8118003 YP_003004908.1 CDS Dd1591_2596 NC_012912.1 2946395 2947312 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA4490 hypothetical protein; hypothetical protein 2946395..2947312 Dickeya zeae Ech1591 8118004 YP_003004909.1 CDS Dd1591_2597 NC_012912.1 2947366 2947791 R KEGG: yen:YE2498 hypothetical protein; hypothetical protein complement(2947366..2947791) Dickeya zeae Ech1591 8118005 YP_003004910.1 CDS Dd1591_2598 NC_012912.1 2947882 2948844 R PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc0625 transcription regulator protein; AraC family transcriptional regulator complement(2947882..2948844) Dickeya zeae Ech1591 8118006 YP_003004911.1 CDS Dd1591_2599 NC_012912.1 2949140 2950288 D PFAM: iron-containing alcohol dehydrogenase; KEGG: abu:Abu_0784 iron-containing NADP-dependent alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2949140..2950288 Dickeya zeae Ech1591 8118007 YP_003004912.1 CDS Dd1591_2600 NC_012912.1 2950744 2951694 D PFAM: periplasmic solute binding protein; KEGG: spe:Spro_2133 periplasmic solute binding protein; periplasmic solute binding protein 2950744..2951694 Dickeya zeae Ech1591 8118008 YP_003004913.1 CDS Dd1591_2601 NC_012912.1 2951691 2952587 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_2132 ABC transporter-related protein; ABC transporter 2951691..2952587 Dickeya zeae Ech1591 8118009 YP_003004914.1 CDS Dd1591_2602 NC_012912.1 2952580 2953437 D PFAM: ABC-3 protein; transport system permease protein; KEGG: eca:ECA2394 chelated iron transport system membrane protein; ABC transporter 2952580..2953437 Dickeya zeae Ech1591 8118010 YP_003004915.1 CDS Dd1591_2603 NC_012912.1 2953439 2954266 D PFAM: ABC-3 protein; KEGG: plu:plu2675 chelated iron transport system membrane protein YfeD-like protein; ABC transporter 2953439..2954266 Dickeya zeae Ech1591 8118011 YP_003004916.1 CDS Dd1591_2604 NC_012912.1 2954403 2955335 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cko:CKO_04761 hypothetical protein; LysR family transcriptional regulator 2954403..2955335 Dickeya zeae Ech1591 8118012 YP_003004917.1 CDS Dd1591_2605 NC_012912.1 2955319 2956227 R TIGRFAM: malonate decarboxylase, epsilon subunit; PFAM: Acyl transferase; KEGG: ent:Ent638_3772 acyl transferase domain-containing protein; malonate decarboxylase subunit epsilon complement(2955319..2956227) Dickeya zeae Ech1591 8118013 YP_003004918.1 CDS Dd1591_2606 NC_012912.1 2956232 2956846 R Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase complement(2956232..2956846) Dickeya zeae Ech1591 8118014 YP_003004919.1 CDS Dd1591_2607 NC_012912.1 2956868 2957827 R TIGRFAM: auxin efflux carrier; PFAM: Auxin Efflux Carrier; KEGG: ent:Ent638_3774 auxin efflux carrier; auxin efflux carrier complement(2956868..2957827) Dickeya zeae Ech1591 8118015 YP_003004920.1 CDS Dd1591_2608 NC_012912.1 2958079 2958879 R TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: cko:CKO_04765 hypothetical protein; malonate decarboxylase subunit gamma complement(2958079..2958879) Dickeya zeae Ech1591 8118016 YP_003004921.1 CDS Dd1591_2609 NC_012912.1 2958876 2959709 R The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta complement(2958876..2959709) Dickeya zeae Ech1591 8118017 YP_003004922.1 CDS Dd1591_2610 NC_012912.1 2959702 2960001 R TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: ent:Ent638_3777 malonate decarboxylase delta subunit; malonate decarboxylase acyl carrier protein complement(2959702..2960001) Dickeya zeae Ech1591 8118018 YP_003004923.1 CDS Dd1591_2611 NC_012912.1 2960011 2960868 R KEGG: ses:SARI_04158 hypothetical protein; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase MdcB; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase MdcB complement(2960011..2960868) Dickeya zeae Ech1591 8118019 YP_003004924.1 CDS Dd1591_2612 NC_012912.1 2960879 2962534 R TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: cko:CKO_04769 hypothetical protein; malonate decarboxylase subunit alpha complement(2960879..2962534) Dickeya zeae Ech1591 8118020 YP_003004925.1 CDS Dd1591_2613 NC_012912.1 2962945 2963922 R PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: eca:ECA1568 putative chemotaxis signal transduction protein; response regulator receiver modulated CheW protein complement(2962945..2963922) Dickeya zeae Ech1591 8118021 YP_003004926.1 CDS Dd1591_2614 NC_012912.1 2964572 2966359 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: eca:ECA4420 ABC transporter ATP-binding protein; ABC transporter complement(2964572..2966359) Dickeya zeae Ech1591 8118022 YP_003004927.1 CDS Dd1591_2615 NC_012912.1 2966363 2967283 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4421 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(2966363..2967283) Dickeya zeae Ech1591 8118023 YP_003004928.1 CDS Dd1591_2616 NC_012912.1 2967280 2968254 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4422 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(2967280..2968254) Dickeya zeae Ech1591 8118024 YP_003004929.1 CDS Dd1591_2617 NC_012912.1 2968305 2969273 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: eca:ECA4423 putative nucleoside hydrolase; Inosine/uridine-preferring nucleoside hydrolase complement(2968305..2969273) Dickeya zeae Ech1591 8118025 YP_003004930.1 CDS Dd1591_2618 NC_012912.1 2969273 2970223 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: eca:ECA4424 putative nucleoside hydrolase protein; Inosine/uridine-preferring nucleoside hydrolase complement(2969273..2970223) Dickeya zeae Ech1591 8118026 YP_003004931.1 CDS Dd1591_2619 NC_012912.1 2970512 2972050 R PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA4426 putative extracellular solute-binding protein; extracellular solute-binding protein family 5 complement(2970512..2972050) Dickeya zeae Ech1591 8118027 YP_003004932.1 CDS Dd1591_2620 NC_012912.1 2972217 2973116 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA4427 LysR family transcriptional regulator; LysR family transcriptional regulator 2972217..2973116 Dickeya zeae Ech1591 8118028 YP_003004933.1 CDS Dd1591_2621 NC_012912.1 2973291 2974055 D PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: eca:ECA1560 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 2973291..2974055 Dickeya zeae Ech1591 8118029 YP_003004934.1 CDS Dd1591_2622 NC_012912.1 2974275 2975201 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA1559 LysR family transcriptional regulator; LysR family transcriptional regulator 2974275..2975201 Dickeya zeae Ech1591 8118030 YP_003004935.1 CDS Dd1591_2623 NC_012912.1 2975563 2976657 R KEGG: eca:ECA1558 putative sulfate ester transporter, periplasmic binding component; putative sulfate ester transporter, periplasmic binding component complement(2975563..2976657) Dickeya zeae Ech1591 8118031 YP_003004936.1 CDS Dd1591_2624 NC_012912.1 2976793 2978493 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1557 putative sulfate ester transporter, permease component; binding-protein-dependent transport systems inner membrane component 2976793..2978493 Dickeya zeae Ech1591 8118032 YP_003004937.1 CDS Dd1591_2625 NC_012912.1 2978490 2979293 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1556 putative sulfate ester transporter, ATP-binding component; ABC transporter 2978490..2979293 Dickeya zeae Ech1591 8118033 YP_003004938.1 CDS Dd1591_2626 NC_012912.1 2979324 2981117 D PFAM: Thioredoxin domain; KEGG: eca:ECA1555 hypothetical protein; Thioredoxin domain-containing protein 2979324..2981117 Dickeya zeae Ech1591 8118034 YP_003004939.1 CDS Dd1591_2627 NC_012912.1 2981330 2982418 D KEGG: mxa:MXAN_6237 hypothetical protein; hypothetical protein 2981330..2982418 Dickeya zeae Ech1591 8118035 YP_003004940.1 CDS Dd1591_2628 NC_012912.1 2982623 2983039 R similar to GE17595 gene product from transcript GE17595-RA; KEGG: GE17595 gene product from transcript GE17595-RA; hypothetical protein complement(2982623..2983039) Dickeya zeae Ech1591 8118036 YP_003004941.1 CDS Dd1591_2629 NC_012912.1 2983359 2984030 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_2723 methionine uptake ABC transporter (MUT) family, permease protein; binding-protein-dependent transport systems inner membrane component complement(2983359..2984030) Dickeya zeae Ech1591 8118037 YP_003004942.1 CDS Dd1591_2630 NC_012912.1 2984015 2984806 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kpn:KPN_01653 D- and L-methionine ABC transporter ATP-binding protein; ABC transporter complement(2984015..2984806) Dickeya zeae Ech1591 8118038 YP_003004943.1 CDS Dd1591_2631 NC_012912.1 2984810 2985616 R PFAM: NLPA lipoprotein; KEGG: esa:ESA_02817 hypothetical protein; NLPA lipoprotein complement(2984810..2985616) Dickeya zeae Ech1591 8118039 YP_003004944.1 CDS Dd1591_2632 NC_012912.1 2985660 2986694 R PFAM: 2OG-Fe(II) oxygenase; KEGG: yps:YPTB1347 putative iron/ascorbate oxidoreductase family protein; 2OG-Fe(II) oxygenase complement(2985660..2986694) Dickeya zeae Ech1591 8118040 YP_003004945.1 CDS Dd1591_2633 NC_012912.1 2987119 2987892 D KEGG: spe:Spro_1006 putative periplasmic ligand-binding sensor protein; putative periplasmic ligand-binding sensor protein 2987119..2987892 Dickeya zeae Ech1591 8118041 YP_003004946.1 CDS Dd1591_2634 NC_012912.1 2988059 2989006 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA4305 LysR family transcriptional regulator; LysR family transcriptional regulator 2988059..2989006 Dickeya zeae Ech1591 8118042 YP_003004947.1 CDS Dd1591_2635 NC_012912.1 2988993 2989691 R KEGG: eca:ECA4304 hypothetical protein; hypothetical protein complement(2988993..2989691) Dickeya zeae Ech1591 8118043 YP_003004948.1 CDS Dd1591_2636 NC_012912.1 2989756 2992536 R KEGG: eca:ECA4303 hypothetical protein; hypothetical protein complement(2989756..2992536) Dickeya zeae Ech1591 8118044 YP_003004949.1 CDS Dd1591_2637 NC_012912.1 2992547 2994868 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: eca:ECA4302 TonB-dependent receptor; TonB-dependent receptor complement(2992547..2994868) Dickeya zeae Ech1591 8118045 YP_003004950.1 CDS Dd1591_2638 NC_012912.1 2994960 2995997 R KEGG: eca:ECA4301 putative sulfate ester binding protein; putative sulfate ester binding protein complement(2994960..2995997) Dickeya zeae Ech1591 8118046 YP_003004951.1 CDS Dd1591_2639 NC_012912.1 2996525 2997382 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: eca:ECA4300 TonB protein; TonB family protein 2996525..2997382 Dickeya zeae Ech1591 8118047 YP_003004952.1 CDS Dd1591_2640 NC_012912.1 2997396 2998094 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: eca:ECA4299 putative biopolymer transport protein; MotA/TolQ/ExbB proton channel 2997396..2998094 Dickeya zeae Ech1591 8118048 YP_003004953.1 CDS Dd1591_2641 NC_012912.1 2998097 2998498 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: eca:ECA4298 putative biopolymer transport protein; Biopolymer transport protein ExbD/TolR 2998097..2998498 Dickeya zeae Ech1591 8118049 YP_003004954.1 CDS Dd1591_2642 NC_012912.1 2998511 3000097 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4297 sulfate ester ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 2998511..3000097 Dickeya zeae Ech1591 8118050 YP_003004955.1 CDS Dd1591_2643 NC_012912.1 3000747 3002159 D KEGG: efe:EFER_1552 putative membrane-associated diguanylate cyclase (GGDEF domain); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 3000747..3002159 Dickeya zeae Ech1591 8118051 YP_003004956.1 CDS Dd1591_2644 NC_012912.1 3002209 3003057 R PFAM: GCN5-related N-acetyltransferase; KEGG: eta:ETA_13850 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase complement(3002209..3003057) Dickeya zeae Ech1591 8118052 YP_003004957.1 CDS Dd1591_2645 NC_012912.1 3003067 3004398 R PFAM: FAD dependent oxidoreductase; KEGG: eta:ETA_13840 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3003067..3004398) Dickeya zeae Ech1591 8118053 YP_003004958.1 CDS Dd1591_2646 NC_012912.1 3004878 3005684 D PFAM: peptidase C1A papain; KEGG: xft:PD0125 cysteine protease; peptidase C1A papain 3004878..3005684 Dickeya zeae Ech1591 8118054 YP_003004959.1 CDS Dd1591_2648 NC_012912.1 3006412 3007818 D PFAM: Integrase catalytic region; KEGG: kpe:KPK_B0045 transposase; Integrase catalytic region 3006412..3007818 Dickeya zeae Ech1591 8118056 YP_003004960.1 CDS Dd1591_2649 NC_012912.1 3007873 3008181 R KEGG: shm:Shewmr7_1024 hypothetical protein; hypothetical protein complement(3007873..3008181) Dickeya zeae Ech1591 8118057 YP_003004961.1 CDS Dd1591_2651 NC_012912.1 3010104 3010196 D hypothetical protein 3010104..3010196 Dickeya zeae Ech1591 8118059 YP_003004962.1 CDS Dd1591_2652 NC_012912.1 3010253 3011374 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: plu:plu2192 hypothetical protein; UBA/THIF-type NAD/FAD binding protein 3010253..3011374 Dickeya zeae Ech1591 8118060 YP_003004963.1 CDS Dd1591_2653 NC_012912.1 3011371 3012048 D PFAM: 2OG-Fe(II) oxygenase; KEGG: hypothetical protein; 2OG-Fe(II) oxygenase 3011371..3012048 Dickeya zeae Ech1591 8118061 YP_003004964.1 CDS Dd1591_2654 NC_012912.1 3012052 3012942 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_4057 hypothetical protein; hypothetical protein 3012052..3012942 Dickeya zeae Ech1591 8118062 YP_003004965.1 CDS lacY NC_012912.1 3013523 3014803 R lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; galactoside permease complement(3013523..3014803) Dickeya zeae Ech1591 8118065 YP_003004966.1 CDS Dd1591_2658 NC_012912.1 3014857 3016986 R PFAM: glycoside hydrolase clan GH-D; KEGG: esa:ESA_03854 hypothetical protein; glycoside hydrolase clan GH-D complement(3014857..3016986) Dickeya zeae Ech1591 8118066 YP_003004967.1 CDS Dd1591_2659 NC_012912.1 3017124 3018146 R PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ent:Ent638_4078 LacI family transcription regulator; LacI family transcriptional regulator complement(3017124..3018146) Dickeya zeae Ech1591 8119101 YP_003004968.1 CDS Dd1591_2660 NC_012912.1 3018308 3018949 R nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma complement(3018308..3018949) Dickeya zeae Ech1591 8119102 YP_003004969.1 CDS Dd1591_2661 NC_012912.1 3018942 3019850 R TIGRFAM: formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase transmembrane domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA1407 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; formate dehydrogenase subunit beta complement(3018942..3019850) Dickeya zeae Ech1591 8119103 YP_003004970.1 CDS Dd1591_2662 NC_012912.1 3019863 3022910 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: eca:ECA1408 formate dehydrogenase, nitrate-inducible, major subunit; formate dehydrogenase subunit alpha complement(3019863..3022910) Dickeya zeae Ech1591 8119104 YP_003004971.1 CDS Dd1591_2663 NC_012912.1 3023454 3024509 D KEGG: bba:Bd0901 Zn-dependent hydrolase; Zn-dependent hydrolase 3023454..3024509 Dickeya zeae Ech1591 8119105 YP_003004972.1 CDS Dd1591_2664 NC_012912.1 3024564 3024923 D PFAM: HicB family protein; KEGG: plu:plu0706 hypothetical protein; HicB family protein 3024564..3024923 Dickeya zeae Ech1591 8119106 YP_003004973.1 CDS Dd1591_2666 NC_012912.1 3025387 3026010 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: psp:PSPPH_2762 hypothetical protein; Dimethylmenaquinone methyltransferase complement(3025387..3026010) Dickeya zeae Ech1591 8119108 YP_003004974.1 CDS Dd1591_2667 NC_012912.1 3026007 3026852 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_2760 achromobactin transport ATP-binding protein CbrD; ABC transporter complement(3026007..3026852) Dickeya zeae Ech1591 8119109 YP_003004975.1 CDS Dd1591_2668 NC_012912.1 3026864 3027913 R PFAM: transport system permease protein; KEGG: psb:Psyr_2592 transport system permease protein; transport system permease protein complement(3026864..3027913) Dickeya zeae Ech1591 8119110 YP_003004976.1 CDS Dd1591_2669 NC_012912.1 3027906 3028928 R PFAM: transport system permease protein; KEGG: sgl:SGP1_0037 achromobactin ABC transporter permease component CbrB; transport system permease protein complement(3027906..3028928) Dickeya zeae Ech1591 8119111 YP_003004977.1 CDS Dd1591_2670 NC_012912.1 3028925 3029743 R PFAM: periplasmic binding protein; KEGG: sgl:SGP1_0038 achromobactin ABC transporter periplasmic component CbrA; periplasmic binding protein complement(3028925..3029743) Dickeya zeae Ech1591 8119112 YP_003004978.1 CDS Dd1591_2671 NC_012912.1 3030113 3031102 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sea:SeAg_B4544 invertase; transposase IS116/IS110/IS902 family protein complement(3030113..3031102) Dickeya zeae Ech1591 8119113 YP_003004979.1 CDS Dd1591_2672 NC_012912.1 3031418 3033331 R PFAM: IucA/IucC family protein; KEGG: psb:Psyr_2589 IucA/IucC; IucA/IucC family protein complement(3031418..3033331) Dickeya zeae Ech1591 8119114 YP_003004980.1 CDS Dd1591_2673 NC_012912.1 3033336 3034112 R PFAM: HpcH/HpaI aldolase; KEGG: psp:PSPPH_2755 achromobactin biosynthetic protein AcsB; HpcH/HpaI aldolase complement(3033336..3034112) Dickeya zeae Ech1591 8119115 YP_003004981.1 CDS Dd1591_2674 NC_012912.1 3034106 3035962 R PFAM: IucA/IucC family protein; KEGG: sgl:SGP1_0041 achromobactin biosynthetic and transport gene AcsC; IucA/IucC family protein complement(3034106..3035962) Dickeya zeae Ech1591 8119116 YP_003004982.1 CDS Dd1591_2675 NC_012912.1 3036016 3037464 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_2586 EmrB/QacA family drug resistance transporter; EmrB/QacA subfamily drug resistance transporter complement(3036016..3037464) Dickeya zeae Ech1591 8119117 YP_003004983.1 CDS Dd1591_2676 NC_012912.1 3037454 3038710 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: psb:Psyr_2585 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2; Diaminopimelate decarboxylase complement(3037454..3038710) Dickeya zeae Ech1591 8119118 YP_003004984.1 CDS Dd1591_2677 NC_012912.1 3038703 3040589 R PFAM: IucA/IucC family protein; KEGG: psb:Psyr_2584 IucA/IucC; IucA/IucC family protein complement(3038703..3040589) Dickeya zeae Ech1591 8119119 YP_003004985.1 CDS Dd1591_2678 NC_012912.1 3040696 3042810 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: eca:ECA2810 TonB-dependent ferric achromobactin receptor; TonB-dependent receptor complement(3040696..3042810) Dickeya zeae Ech1591 8119120 YP_003004986.1 CDS Dd1591_2679 NC_012912.1 3042976 3044358 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(3042976..3044358) Dickeya zeae Ech1591 8119121 YP_003004987.1 CDS Dd1591_2680 NC_012912.1 3044774 3045670 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1413 phosphonate ABC transporter, inner membrane subunit; phosphonate ABC transporter permease complement(3044774..3045670) Dickeya zeae Ech1591 8119122 YP_003004988.1 CDS Dd1591_2681 NC_012912.1 3045667 3046533 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1412 phosphonate ABC transporter, inner membrane subunit; phosphonate ABC transporter permease complement(3045667..3046533) Dickeya zeae Ech1591 8119123 YP_003004989.1 CDS Dd1591_2682 NC_012912.1 3046705 3047637 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: spe:Spro_1411 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter substrate-binding protein complement(3046705..3047637) Dickeya zeae Ech1591 8119124 YP_003004990.1 CDS Dd1591_2683 NC_012912.1 3047745 3048605 R KEGG: spe:Spro_1410 phosphonate ABC transporter, ATPase subunit; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATPase complement(3047745..3048605) Dickeya zeae Ech1591 8119125 YP_003004991.1 CDS Dd1591_2684 NC_012912.1 3048782 3049702 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpi:Rpic_4851 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3048782..3049702) Dickeya zeae Ech1591 8119126 YP_003004992.1 CDS Dd1591_2685 NC_012912.1 3049805 3050713 D PFAM: aldo/keto reductase; KEGG: ara:Arad_0567 oxidoreductase protein; aldo/keto reductase 3049805..3050713 Dickeya zeae Ech1591 8119127 YP_003004993.1 CDS Dd1591_2686 NC_012912.1 3050762 3051511 R TIGRFAM: phosphonate metabolism protein PhnP; PFAM: beta-lactamase domain protein; KEGG: spe:Spro_0512 carbon-phosphorus lyase complex accessory protein; phosphonate metabolism protein PhnP complement(3050762..3051511) Dickeya zeae Ech1591 8119128 YP_003004994.1 CDS Dd1591_2687 NC_012912.1 3051530 3052090 R TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: yen:YE0470 ribose 1,5-bisphosphokinase; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN complement(3051530..3052090) Dickeya zeae Ech1591 8119129 YP_003004995.1 CDS Dd1591_2688 NC_012912.1 3052090 3053259 R TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; amidohydrolase; KEGG: spe:Spro_0515 phosphonate metabolism protein PhnM; phosphonate metabolism protein PhnM complement(3052090..3053259) Dickeya zeae Ech1591 8119130 YP_003004996.1 CDS Dd1591_2689 NC_012912.1 3053256 3053978 R KEGG: ypg:YpAngola_A4026 phosphonate ABC transporter ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL complement(3053256..3053978) Dickeya zeae Ech1591 8119131 YP_003004997.1 CDS phnK NC_012912.1 3054003 3054824 R KEGG: spe:Spro_0517 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK complement(3054003..3054824) Dickeya zeae Ech1591 8119132 YP_003004998.1 CDS Dd1591_2691 NC_012912.1 3054811 3055665 R PFAM: phosphonate metabolism PhnJ; KEGG: yps:YPTB0513 protein in phn operon; phosphonate metabolism PhnJ complement(3054811..3055665) Dickeya zeae Ech1591 8119133 YP_003004999.1 CDS Dd1591_2692 NC_012912.1 3055643 3056734 R PFAM: phosphonate metabolism; KEGG: spe:Spro_0519 phosphonate metabolism; phosphonate metabolism complement(3055643..3056734) Dickeya zeae Ech1591 8119134 YP_003005000.1 CDS Dd1591_2693 NC_012912.1 3056734 3057309 R TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: cko:CKO_03770 carbon-phosphorus lyase complex subunit; phosphonate C-P lyase system protein PhnH complement(3056734..3057309) Dickeya zeae Ech1591 8119135 YP_003005001.1 CDS Dd1591_2694 NC_012912.1 3057306 3057755 R TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: spe:Spro_0521 phosphonate metabolism PhnG; phosphonate C-P lyase system protein PhnG complement(3057306..3057755) Dickeya zeae Ech1591 8119136 YP_003005002.1 CDS Dd1591_2695 NC_012912.1 3057756 3058475 R may be involved in phosphonate uptake and biodegradation; phosphonate metabolism transcriptional regulator PhnF complement(3057756..3058475) Dickeya zeae Ech1591 8119137 YP_003005003.1 CDS Dd1591_2696 NC_012912.1 3058919 3059398 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: plu:plu0404 hypothetical protein; Hcp1 family type VI secretion system effector 3058919..3059398 Dickeya zeae Ech1591 8119138 YP_003005004.1 CDS Dd1591_2697 NC_012912.1 3059613 3060305 R KEGG: yps:YPTB1848 hypothetical protein; hypothetical protein complement(3059613..3060305) Dickeya zeae Ech1591 8119139 YP_003005005.1 CDS Dd1591_2698 NC_012912.1 3060499 3060819 D KEGG: esa:ESA_01406 hypothetical protein; hypothetical protein 3060499..3060819 Dickeya zeae Ech1591 8119140 YP_003005006.1 CDS Dd1591_2699 NC_012912.1 3060924 3062342 R catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase complement(3060924..3062342) Dickeya zeae Ech1591 8119141 YP_003005007.1 CDS Dd1591_2700 NC_012912.1 3062620 3064056 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(3062620..3064056) Dickeya zeae Ech1591 8119142 YP_003005008.1 CDS Dd1591_2701 NC_012912.1 3064919 3066280 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 3064919..3066280 Dickeya zeae Ech1591 8119143 YP_003005009.1 CDS Dd1591_2702 NC_012912.1 3066469 3067458 R PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; KEGG: bha:BH2703 hypothetical protein; oxidoreductase domain-containing protein complement(3066469..3067458) Dickeya zeae Ech1591 8119144 YP_003005010.1 CDS Dd1591_2704 NC_012912.1 3067711 3069027 R PFAM: sodium:dicarboxylate symporter; KEGG: eca:ECA1520 glutamate/aspartate:proton symporter; sodium:dicarboxylate symporter complement(3067711..3069027) Dickeya zeae Ech1591 8119146 YP_003005011.1 CDS Dd1591_2705 NC_012912.1 3069481 3070434 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA1519 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein complement(3069481..3070434) Dickeya zeae Ech1591 8119147 YP_003005012.1 CDS Dd1591_2706 NC_012912.1 3070898 3071173 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: pmr:PMI3583 hydrogenase formation protein; hydrogenase assembly chaperone HypC/HupF complement(3070898..3071173) Dickeya zeae Ech1591 8119148 YP_003005013.1 CDS Dd1591_2707 NC_012912.1 3071584 3072210 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: yen:YE2798 hydrogenase-4 component A; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3071584..3072210 Dickeya zeae Ech1591 8119149 YP_003005014.1 CDS Dd1591_2708 NC_012912.1 3072207 3074246 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: yen:YE2799 hydrogenase 4 subunit B; hydrogenase 4 subunit B 3072207..3074246 Dickeya zeae Ech1591 8119150 YP_003005015.1 CDS Dd1591_2709 NC_012912.1 3074259 3075206 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: yen:YE2800 hydrogenase-4 component C; respiratory-chain NADH dehydrogenase subunit 1 3074259..3075206 Dickeya zeae Ech1591 8119151 YP_003005016.1 CDS Dd1591_2710 NC_012912.1 3075223 3076662 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: yen:YE2801 hydrogenase 4 subunit D; hydrogenase 4 subunit D 3075223..3076662 Dickeya zeae Ech1591 8119152 YP_003005017.1 CDS hyfE NC_012912.1 3076672 3077322 D interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; hydrogenase 4 membrane subunit 3076672..3077322 Dickeya zeae Ech1591 8119153 YP_003005018.1 CDS Dd1591_2712 NC_012912.1 3077328 3078989 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: yen:YE2803 hydrogenase 4 subunit F; hydrogenase 4 subunit F 3077328..3078989 Dickeya zeae Ech1591 8119154 YP_003005019.1 CDS Dd1591_2713 NC_012912.1 3078982 3080709 D PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: pmr:PMI2522 hydrogenase-4 component G; NADH dehydrogenase (ubiquinone) 30 kDa subunit 3078982..3080709 Dickeya zeae Ech1591 8119155 YP_003005020.1 CDS Dd1591_2714 NC_012912.1 3080720 3081289 D probable electron transfer protein for hydrogenase 4; hydrogenase 4 is believed to be silent in E. coli under conditions tested so far; hydrogenase 4 subunit H 3080720..3081289 Dickeya zeae Ech1591 8119156 YP_003005021.1 CDS Dd1591_2715 NC_012912.1 3081286 3082077 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: yen:YE2806 hydrogenase-4 component I; NADH ubiquinone oxidoreductase 20 kDa subunit 3081286..3082077 Dickeya zeae Ech1591 8119157 YP_003005022.1 CDS Dd1591_2716 NC_012912.1 3082074 3082472 D PFAM: formate hydrogenlyase maturation HycH; KEGG: yen:YE2807 hydrogenase-4 component J; formate hydrogenlyase maturation HycH 3082074..3082472 Dickeya zeae Ech1591 8119158 YP_003005023.1 CDS hycI NC_012912.1 3082465 3082962 D involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 3082465..3082962 Dickeya zeae Ech1591 8119159 YP_003005024.1 CDS Dd1591_2718 NC_012912.1 3083062 3083550 R KEGG: mmw:Mmwyl1_0663 putative transcriptional regulator; putative addiction module antidote protein complement(3083062..3083550) Dickeya zeae Ech1591 8119160 YP_003005025.1 CDS Dd1591_2719 NC_012912.1 3083558 3083815 R KEGG: vco:VC0395_0747 hypothetical protein; hypothetical protein complement(3083558..3083815) Dickeya zeae Ech1591 8119161 YP_003005026.1 CDS Dd1591_2720 NC_012912.1 3084329 3084871 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: yen:YE2809 4Fe-4S ferrodoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3084329..3084871 Dickeya zeae Ech1591 8119162 YP_003005027.1 CDS Dd1591_2721 NC_012912.1 3084906 3087056 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: yen:YE2810 formate dehydrogenase H; formate dehydrogenase subunit alpha 3084906..3087056 Dickeya zeae Ech1591 8119163 YP_003005028.1 CDS Dd1591_2722 NC_012912.1 3087326 3088534 D PFAM: AAA-4 family protein; KEGG: cja:CJA_1578 putative ATP-dependent DNA helicase; putative transcriptional regulator 3087326..3088534 Dickeya zeae Ech1591 8119164 YP_003005029.1 CDS Dd1591_2723 NC_012912.1 3088531 3089547 D KEGG: aeh:Mlg_2299 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3088531..3089547 Dickeya zeae Ech1591 8119165 YP_003005030.1 CDS Dd1591_2724 NC_012912.1 3089630 3091801 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; GAF domain protein; KEGG: yen:YE2811 putative hydrogenlyase transcriptional activator; NifA subfamily transcriptional regulator, Fis Family complement(3089630..3091801) Dickeya zeae Ech1591 8119166 YP_003005031.1 CDS Dd1591_2725 NC_012912.1 3092724 3094013 D PFAM: sodium:dicarboxylate symporter; KEGG: eca:ECA1503 proton glutamate symport protein; sodium:dicarboxylate symporter 3092724..3094013 Dickeya zeae Ech1591 8119167 YP_003005032.1 CDS Dd1591_2727 NC_012912.1 3094463 3095104 R PFAM: regulatory protein TetR; HMG-I and HMG-Y DNA-binding domain protein; KEGG: pzu:PHZ_c3419 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3094463..3095104) Dickeya zeae Ech1591 8119169 YP_003005033.1 CDS Dd1591_2728 NC_012912.1 3095251 3096060 D KEGG: nmu:Nmul_A0946 putative glutathione S-transferase; putative glutathione S-transferase 3095251..3096060 Dickeya zeae Ech1591 8119170 YP_003005034.1 CDS Dd1591_2730 NC_012912.1 3096383 3097276 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eca:ECA1501 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3096383..3097276) Dickeya zeae Ech1591 8119172 YP_003005035.1 CDS Dd1591_2731 NC_012912.1 3097385 3098143 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: eca:ECA1500 aspartate racemase; aspartate racemase 3097385..3098143 Dickeya zeae Ech1591 8119173 YP_003005036.1 CDS lacI NC_012912.1 3098231 3099304 D transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; lac repressor 3098231..3099304 Dickeya zeae Ech1591 8119174 YP_003005037.1 CDS lacZ NC_012912.1 3099483 3102593 D forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; beta-D-galactosidase 3099483..3102593 Dickeya zeae Ech1591 8119175 YP_003005038.1 CDS Dd1591_2735 NC_012912.1 3103683 3104066 R KEGG: xfa:XF1742 hypothetical protein; hypothetical protein complement(3103683..3104066) Dickeya zeae Ech1591 8119178 YP_003005039.1 CDS Dd1591_2736 NC_012912.1 3104198 3104965 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bid:Bind_1760 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3104198..3104965) Dickeya zeae Ech1591 8119179 YP_003005040.1 CDS Dd1591_2737 NC_012912.1 3104991 3106067 R KEGG: kpn:KPN_01707 hypothetical protein; hypothetical protein complement(3104991..3106067) Dickeya zeae Ech1591 8119180 YP_003005041.1 CDS Dd1591_2738 NC_012912.1 3106256 3107506 R PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl01_2475 major facilitator transporter; major facilitator superfamily protein complement(3106256..3107506) Dickeya zeae Ech1591 8119741 YP_003005042.1 CDS Dd1591_2739 NC_012912.1 3107697 3108620 D PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: kpn:KPN_01705 putative AraC-type regulatory protein; AraC family transcriptional regulator 3107697..3108620 Dickeya zeae Ech1591 8119742 YP_003005043.1 CDS Dd1591_2740 NC_012912.1 3108703 3109314 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: msu:MS2162 MdaB protein; NAD(P)H dehydrogenase (quinone) complement(3108703..3109314) Dickeya zeae Ech1591 8119743 YP_003005044.1 CDS Dd1591_2741 NC_012912.1 3109739 3110911 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: abu:Abu_0783 zinc-containing NADP-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 3109739..3110911 Dickeya zeae Ech1591 8119744 YP_003005045.1 CDS Dd1591_2742 NC_012912.1 3111035 3111733 R KEGG: eca:ECA2148 putative ABC transport ATP-binding subunit; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE complement(3111035..3111733) Dickeya zeae Ech1591 8119745 YP_003005046.1 CDS Dd1591_2743 NC_012912.1 3111736 3112527 R TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: spe:Spro_1424 ABC transporter-related protein; urea ABC transporter ATP-binding protein UrtD complement(3111736..3112527) Dickeya zeae Ech1591 8119746 YP_003005047.1 CDS Dd1591_2744 NC_012912.1 3112520 3113596 R TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: eca:ECA2146 putative branched-chain amino acid transport system, permease component; urea ABC transporter permease protein UrtC complement(3112520..3113596) Dickeya zeae Ech1591 8119747 YP_003005048.1 CDS Dd1591_2745 NC_012912.1 3113596 3115173 R TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: eca:ECA2145 putative branched-chain amino acid transport system, permease component; urea ABC transporter permease protein UrtB complement(3113596..3115173) Dickeya zeae Ech1591 8119748 YP_003005049.1 CDS Dd1591_2746 NC_012912.1 3115282 3116553 R TIGRFAM: urea ABC transporter, urea binding protein; PFAM: Extracellular ligand-binding receptor; KEGG: esa:ESA_01770 hypothetical protein; urea ABC transporter urea binding protein complement(3115282..3116553) Dickeya zeae Ech1591 8119749 YP_003005050.1 CDS Dd1591_2747 NC_012912.1 3116618 3117319 R PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: eca:ECA2143 GntR family transcriptional regulator; GntR family transcriptional regulator complement(3116618..3117319) Dickeya zeae Ech1591 8119750 YP_003005051.1 CDS Dd1591_2748 NC_012912.1 3117331 3120945 R KEGG: eca:ECA2142 UreA amidolyase; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; RimK domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; urea carboxylase complement(3117331..3120945) Dickeya zeae Ech1591 8119751 YP_003005052.1 CDS Dd1591_2749 NC_012912.1 3120938 3122743 R catalyzes the hydrolysis of allophanate; allophanate hydrolase complement(3120938..3122743) Dickeya zeae Ech1591 8119752 YP_003005053.1 CDS Dd1591_2750 NC_012912.1 3122847 3123116 D hypothetical protein 3122847..3123116 Dickeya zeae Ech1591 8119753 YP_003005054.1 CDS Dd1591_2751 NC_012912.1 3123285 3123539 R KEGG: eca:ECA1472 hypothetical protein; hypothetical protein complement(3123285..3123539) Dickeya zeae Ech1591 8119754 YP_003005055.1 CDS Dd1591_2752 NC_012912.1 3123634 3123966 R PFAM: Protein of unknown function DUF1971; KEGG: eca:ECA1474 hypothetical protein; hypothetical protein complement(3123634..3123966) Dickeya zeae Ech1591 8119755 YP_003005056.1 CDS Dd1591_2753 NC_012912.1 3124290 3124919 D PFAM: flavin reductase domain protein FMN-binding; KEGG: eca:ECA1475 hypothetical protein; flavin reductase domain-containing protein FMN-binding 3124290..3124919 Dickeya zeae Ech1591 8119756 YP_003005057.1 CDS Dd1591_2754 NC_012912.1 3125027 3125530 R KEGG: sew:SeSA_A4796 P-18 protein; P-18 protein complement(3125027..3125530) Dickeya zeae Ech1591 8119757 YP_003005058.1 CDS Dd1591_2755 NC_012912.1 3125655 3126557 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: yps:YPTB0599 AraC/XylS family transcription factor; AraC family transcriptional regulator complement(3125655..3126557) Dickeya zeae Ech1591 8119758 YP_003005059.1 CDS Dd1591_2756 NC_012912.1 3126696 3127151 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: kpe:KPK_2661 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3126696..3127151) Dickeya zeae Ech1591 8119759 YP_003005060.1 CDS Dd1591_2757 NC_012912.1 3127340 3128101 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2078 oligopeptide ABC transporter ATP-binding protein; ABC transporter complement(3127340..3128101) Dickeya zeae Ech1591 8119760 YP_003005061.1 CDS Dd1591_2758 NC_012912.1 3128105 3128917 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2077 oligopeptide ABC transporter ATP-binding protein; ABC transporter complement(3128105..3128917) Dickeya zeae Ech1591 8119761 YP_003005062.1 CDS Dd1591_2759 NC_012912.1 3128914 3129771 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmr:PMI2945 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component complement(3128914..3129771) Dickeya zeae Ech1591 8119762 YP_003005063.1 CDS Dd1591_2760 NC_012912.1 3129768 3130703 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmr:PMI2946 ABC-transporter, permease protein; binding-protein-dependent transport systems inner membrane component complement(3129768..3130703) Dickeya zeae Ech1591 8119763 YP_003005064.1 CDS Dd1591_2761 NC_012912.1 3130769 3132343 R TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; KEGG: pmr:PMI2947 ABC transporter. substrate-binding protein; nickel ABC transporter periplasmic nickel-binding protein complement(3130769..3132343) Dickeya zeae Ech1591 8119764 YP_003005065.1 CDS Dd1591_2762 NC_012912.1 3132416 3133213 R PFAM: Methyltransferase type 11; NodS family protein; methyltransferase small; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein; type 11 methyltransferase complement(3132416..3133213) Dickeya zeae Ech1591 8119765 YP_003005066.1 CDS Dd1591_2763 NC_012912.1 3133779 3135977 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: hch:HCH_03207 catalase/peroxidase HPI; catalase/peroxidase HPI 3133779..3135977 Dickeya zeae Ech1591 8119766 YP_003005067.1 CDS Dd1591_2764 NC_012912.1 3136304 3136720 D PFAM: LrgA family protein; KEGG: ses:SARI_00720 hypothetical protein; LrgA family protein 3136304..3136720 Dickeya zeae Ech1591 8119767 YP_003005068.1 CDS Dd1591_2765 NC_012912.1 3136710 3137405 D PFAM: LrgB family protein; KEGG: esa:ESA_01093 hypothetical protein; hypothetical protein 3136710..3137405 Dickeya zeae Ech1591 8119768 YP_003005069.1 CDS Dd1591_2766 NC_012912.1 3137433 3138230 R PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A1171 AraC family transcriptional regulator; AraC family transcriptional regulator complement(3137433..3138230) Dickeya zeae Ech1591 8119769 YP_003005070.1 CDS Dd1591_2767 NC_012912.1 3138722 3139870 D catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane fatty acyl phospholipid synthase 3138722..3139870 Dickeya zeae Ech1591 8119770 YP_003005071.1 CDS Dd1591_2768 NC_012912.1 3139989 3140708 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: eca:ECA1920 hypothetical protein; hypothetical protein 3139989..3140708 Dickeya zeae Ech1591 8119771 YP_003005072.1 CDS Dd1591_2769 NC_012912.1 3140718 3142145 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: cko:CKO_04246 hypothetical protein; iron-sulfur cluster binding protein 3140718..3142145 Dickeya zeae Ech1591 8119772 YP_003005073.1 CDS Dd1591_2770 NC_012912.1 3142145 3142840 D PFAM: protein of unknown function DUF162; KEGG: eca:ECA1918 hypothetical protein; hypothetical protein 3142145..3142840 Dickeya zeae Ech1591 8119773 YP_003005074.1 CDS Dd1591_2771 NC_012912.1 3143275 3145011 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: esa:ESA_01129 hypothetical protein; ABC transporter complement(3143275..3145011) Dickeya zeae Ech1591 8119774 YP_003005075.1 CDS Dd1591_2772 NC_012912.1 3145315 3146079 R PFAM: protein of unknown function DUF81; KEGG: eca:ECA3201 hypothetical protein; hypothetical protein complement(3145315..3146079) Dickeya zeae Ech1591 8119775 YP_003005076.1 CDS Dd1591_2773 NC_012912.1 3146138 3147262 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_2525 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(3146138..3147262) Dickeya zeae Ech1591 8119776 YP_003005077.1 CDS Dd1591_2774 NC_012912.1 3147259 3147996 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcj:BCAM0111 two-component regulatory system, response regulator protein; winged helix family two component transcriptional regulator complement(3147259..3147996) Dickeya zeae Ech1591 8119777 YP_003005078.1 CDS Dd1591_2775 NC_012912.1 3148130 3149392 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bmj:BMULJ_04150 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 3148130..3149392 Dickeya zeae Ech1591 8119778 YP_003005079.1 CDS Dd1591_2776 NC_012912.1 3149413 3152547 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSp0312 multidrug efflux system transmembrane protein; transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3149413..3152547 Dickeya zeae Ech1591 8119779 YP_003005080.1 CDS Dd1591_2777 NC_012912.1 3152961 3153827 R PFAM: N-acetyltransferase; KEGG: mxa:MXAN_1194 N-acetyltransferase family protein; N-acetyltransferase complement(3152961..3153827) Dickeya zeae Ech1591 8119780 YP_003005081.1 CDS Dd1591_2778 NC_012912.1 3153928 3154095 D hypothetical protein 3153928..3154095 Dickeya zeae Ech1591 8119781 YP_003005082.1 CDS Dd1591_2779 NC_012912.1 3154229 3155143 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0003333 probable transcriptional regulator protein, LysR family; LysR family transcriptional regulator 3154229..3155143 Dickeya zeae Ech1591 8119782 YP_003005083.1 CDS Dd1591_2780 NC_012912.1 3155753 3157258 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; Osmosensory transporter coiled coil; major facilitator superfamily MFS_1; KEGG: eta:ETA_32990 proline/betaine transporter; proline/glycine betaine transporter 3155753..3157258 Dickeya zeae Ech1591 8119783 YP_003005084.1 CDS Dd1591_2781 NC_012912.1 3157338 3157565 R PFAM: protein of unknown function DUF1272; KEGG: atc:AGR_C_4366 hypothetical protein; hypothetical protein complement(3157338..3157565) Dickeya zeae Ech1591 8119784 YP_003005085.1 CDS Dd1591_2782 NC_012912.1 3157608 3158921 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: spe:Spro_2927 Dyp-type peroxidase family protein; Dyp-type peroxidase family complement(3157608..3158921) Dickeya zeae Ech1591 8119785 YP_003005086.1 CDS Dd1591_2783 NC_012912.1 3158933 3160054 R KEGG: spe:Spro_2928 hypothetical protein; hypothetical protein complement(3158933..3160054) Dickeya zeae Ech1591 8119786 YP_003005087.1 CDS Dd1591_2784 NC_012912.1 3160081 3160926 R PFAM: iron permease FTR1; KEGG: spe:Spro_2929 iron permease FTR1; iron permease FTR1 complement(3160081..3160926) Dickeya zeae Ech1591 8119787 YP_003005088.1 CDS Dd1591_2785 NC_012912.1 3161246 3162805 R KEGG: esa:ESA_01230 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(3161246..3162805) Dickeya zeae Ech1591 8119788 YP_003005089.1 CDS Dd1591_2786 NC_012912.1 3163649 3164638 D PFAM: protein of unknown function DUF1611; KEGG: mes:Meso_0034 protein of unknown function DUF1611; hypothetical protein 3163649..3164638 Dickeya zeae Ech1591 8119789 YP_003005090.1 CDS Dd1591_2787 NC_012912.1 3164648 3165658 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA3116 putative mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 3164648..3165658 Dickeya zeae Ech1591 8119790 YP_003005091.1 CDS Dd1591_2788 NC_012912.1 3165658 3166518 D PFAM: aminotransferase class IV; KEGG: eca:ECA3117 D-alanine aminotransferase; aminotransferase class IV 3165658..3166518 Dickeya zeae Ech1591 8119791 YP_003005092.1 CDS Dd1591_2789 NC_012912.1 3166543 3167121 R PFAM: regulatory protein TetR; KEGG: eca:ECA0946 TetR family transcriptional regulator; TetR family transcriptional regulator complement(3166543..3167121) Dickeya zeae Ech1591 8119792 YP_003005093.1 CDS Dd1591_2790 NC_012912.1 3167239 3168117 D KEGG: eca:ECA0947 hypothetical protein; hypothetical protein 3167239..3168117 Dickeya zeae Ech1591 8119793 YP_003005094.1 CDS Dd1591_2791 NC_012912.1 3168204 3169136 R hypothetical protein complement(3168204..3169136) Dickeya zeae Ech1591 8119794 YP_003005095.1 CDS Dd1591_2792 NC_012912.1 3169198 3170565 R PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: eca:ECA3430 putative lipoprotein; Sel1 domain-containing protein repeat-containing protein complement(3169198..3170565) Dickeya zeae Ech1591 8119795 YP_003005096.1 CDS Dd1591_2793 NC_012912.1 3170635 3172068 R PFAM: ImpA domain protein; KEGG: eca:ECA3431 hypothetical protein; ImpA domain-containing protein complement(3170635..3172068) Dickeya zeae Ech1591 8119796 YP_003005097.1 CDS Dd1591_2794 NC_012912.1 3172120 3175617 R TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: eca:ECA3432 putative virulence-associated protein; type VI secretion protein IcmF complement(3172120..3175617) Dickeya zeae Ech1591 8119797 YP_003005098.1 CDS Dd1591_2795 NC_012912.1 3175643 3177082 R TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: eca:ECA3433 hypothetical protein; type VI secretion-associated protein complement(3175643..3177082) Dickeya zeae Ech1591 8119798 YP_003005099.1 CDS Dd1591_2796 NC_012912.1 3177094 3177657 R TIGRFAM: type VI secretion-associated protein, VC_A0118 family; KEGG: eca:ECA3434 hypothetical protein; type VI secretion-associated protein complement(3177094..3177657) Dickeya zeae Ech1591 8119799 YP_003005100.1 CDS Dd1591_2797 NC_012912.1 3177657 3179195 R PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: eca:ECA3435 putative sigma-54 dependent transcriptional regulator; putative sigma54 specific transcriptional regulator complement(3177657..3179195) Dickeya zeae Ech1591 8119800 YP_003005101.1 CDS Dd1591_2798 NC_012912.1 3179198 3181816 R KEGG: eca:ECA3436 putative chaperone; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; type VI secretion ATPase, ClpV1 family complement(3179198..3181816) Dickeya zeae Ech1591 8119801 YP_003005102.1 CDS Dd1591_2799 NC_012912.1 3181832 3182608 R TIGRFAM: type IV / VI secretion system protein, DotU family; KEGG: eca:ECA3437 hypothetical protein; type IV / VI secretion system protein, DotU family complement(3181832..3182608) Dickeya zeae Ech1591 8119802 YP_003005103.1 CDS Dd1591_2800 NC_012912.1 3182625 3183962 R TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: eca:ECA3438 hypothetical protein; type VI secretion protein complement(3182625..3183962) Dickeya zeae Ech1591 8119803 YP_003005104.1 CDS Dd1591_2801 NC_012912.1 3183965 3184501 R TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: eca:ECA3439 putative lipoprotein; type VI secretion lipoprotein, VC_A0113 family complement(3183965..3184501) Dickeya zeae Ech1591 8119804 YP_003005105.1 CDS Dd1591_2802 NC_012912.1 3184501 3185730 R TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: eca:ECA3440 hypothetical protein; FHA domain-containing protein complement(3184501..3185730) Dickeya zeae Ech1591 8119805 YP_003005106.1 CDS Dd1591_2803 NC_012912.1 3185733 3186746 R TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: eca:ECA3441 hypothetical protein; type VI secretion protein complement(3185733..3186746) Dickeya zeae Ech1591 8119806 YP_003005107.1 CDS Dd1591_2804 NC_012912.1 3186710 3188476 R TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: eca:ECA3442 hypothetical protein; type VI secretion protein complement(3186710..3188476) Dickeya zeae Ech1591 8119807 YP_003005108.1 CDS Dd1591_2805 NC_012912.1 3188479 3188910 R TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: eca:ECA3443 hypothetical protein; type VI secretion system lysozyme-related protein complement(3188479..3188910) Dickeya zeae Ech1591 8119808 YP_003005109.1 CDS Dd1591_2806 NC_012912.1 3188917 3190395 R TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: eca:ECA3444 hypothetical protein; EvpB/VC_A0108 family type VI secretion protein complement(3188917..3190395) Dickeya zeae Ech1591 8119809 YP_003005110.1 CDS Dd1591_2807 NC_012912.1 3190427 3190930 R TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: eca:ECA3445 hypothetical protein; type VI secretion protein complement(3190427..3190930) Dickeya zeae Ech1591 8119810 YP_003005111.1 CDS Dd1591_2808 NC_012912.1 3192025 3193182 R KEGG: kpe:KPK_2239 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(3192025..3193182) Dickeya zeae Ech1591 8119811 YP_003005112.1 CDS Dd1591_2809 NC_012912.1 3193420 3193872 D PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: eca:ECA3419 hypothetical protein; hypothetical protein 3193420..3193872 Dickeya zeae Ech1591 8119812 YP_003005113.1 CDS Dd1591_2810 NC_012912.1 3193948 3194268 R KEGG: bvi:Bcep1808_0453 hypothetical protein; hypothetical protein complement(3193948..3194268) Dickeya zeae Ech1591 8119813 YP_003005114.1 CDS Dd1591_2812 NC_012912.1 3194554 3195006 R hypothetical protein complement(3194554..3195006) Dickeya zeae Ech1591 8119815 YP_003005115.1 CDS Dd1591_2813 NC_012912.1 3194991 3200012 R TIGRFAM: YD repeat protein; KEGG: eca:ECA3421 rhs protein; YD repeat protein complement(3194991..3200012) Dickeya zeae Ech1591 8119816 YP_003005116.1 CDS Dd1591_2814 NC_012912.1 3200299 3200685 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ypi:YpsIP31758_0337 DNA-binding protein; XRE family transcriptional regulator 3200299..3200685 Dickeya zeae Ech1591 8119817 YP_003005117.1 CDS Dd1591_2815 NC_012912.1 3200769 3201098 D PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: eca:ECA3392 hypothetical protein; hypothetical protein 3200769..3201098 Dickeya zeae Ech1591 8119818 YP_003005118.1 CDS Dd1591_2816 NC_012912.1 3201095 3201445 D PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: eca:ECA3419 hypothetical protein; hypothetical protein 3201095..3201445 Dickeya zeae Ech1591 8119819 YP_003005119.1 CDS Dd1591_2817 NC_012912.1 3201507 3201854 R KEGG: plu:plu3119 hypothetical protein; hypothetical protein complement(3201507..3201854) Dickeya zeae Ech1591 8119820 YP_003005120.1 CDS Dd1591_2818 NC_012912.1 3201865 3206904 R TIGRFAM: YD repeat protein; KEGG: eca:ECA3421 rhs protein; YD repeat protein complement(3201865..3206904) Dickeya zeae Ech1591 8120514 YP_003005121.1 CDS Dd1591_2819 NC_012912.1 3206922 3207839 R KEGG: eca:ECA3422 hypothetical protein; hypothetical protein complement(3206922..3207839) Dickeya zeae Ech1591 8120515 YP_003005122.1 CDS Dd1591_2820 NC_012912.1 3207836 3208822 R KEGG: eca:ECA3423 hypothetical protein; hypothetical protein complement(3207836..3208822) Dickeya zeae Ech1591 8120516 YP_003005123.1 CDS Dd1591_2821 NC_012912.1 3208951 3209715 R SMART: Ankyrin; KEGG: eca:ECA3424 putative lipoprotein; ankyrin complement(3208951..3209715) Dickeya zeae Ech1591 8120517 YP_003005124.1 CDS Dd1591_2822 NC_012912.1 3209712 3210479 R PFAM: Ankyrin; SMART: Ankyrin; KEGG: eca:ECA3424 putative lipoprotein; ankyrin complement(3209712..3210479) Dickeya zeae Ech1591 8120518 YP_003005125.1 CDS Dd1591_2823 NC_012912.1 3210476 3211255 R PFAM: Ankyrin; SMART: Ankyrin; KEGG: eca:ECA3425 putative lipoprotein; ankyrin complement(3210476..3211255) Dickeya zeae Ech1591 8120519 YP_003005126.1 CDS Dd1591_2824 NC_012912.1 3211255 3212625 R PFAM: PAAR repeat-containing protein; KEGG: eca:ECA3426 putative phospholipase; PAAR repeat-containing protein complement(3211255..3212625) Dickeya zeae Ech1591 8120520 YP_003005127.1 CDS Dd1591_2825 NC_012912.1 3212635 3214671 R TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: eca:ECA3427 hypothetical protein; type VI secretion system Vgr family protein complement(3212635..3214671) Dickeya zeae Ech1591 8120521 YP_003005128.1 CDS Dd1591_2826 NC_012912.1 3214837 3215355 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein; Hcp1 family type VI secretion system effector complement(3214837..3215355) Dickeya zeae Ech1591 8120522 YP_003005129.1 CDS Dd1591_2827 NC_012912.1 3215848 3217305 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 3215848..3217305 Dickeya zeae Ech1591 8120523 YP_003005130.1 CDS Dd1591_2828 NC_012912.1 3217388 3217723 R KEGG: eca:ECA3371 hypothetical protein; hypothetical protein complement(3217388..3217723) Dickeya zeae Ech1591 8120524 YP_003005131.1 CDS Dd1591_2829 NC_012912.1 3218182 3218667 D PFAM: Ferritin Dps family protein; KEGG: spe:Spro_2688 ferritin Dps family protein; Ferritin Dps family protein 3218182..3218667 Dickeya zeae Ech1591 8120525 YP_003005132.1 CDS Dd1591_2830 NC_012912.1 3218776 3219918 R KEGG: eca:ECA3507 hypothetical protein; 6-phosphogluconolactonase complement(3218776..3219918) Dickeya zeae Ech1591 8120526 YP_003005133.1 CDS Dd1591_2831 NC_012912.1 3220113 3222539 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpe:KPK_1035 TonB-dependent receptor; TonB-dependent receptor complement(3220113..3222539) Dickeya zeae Ech1591 8120527 YP_003005134.1 CDS hmuV NC_012912.1 3222739 3223533 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(3222739..3223533) Dickeya zeae Ech1591 8120528 YP_003005135.1 CDS Dd1591_2833 NC_012912.1 3223526 3224515 R PFAM: transport system permease protein; KEGG: sgl:SG1539 hemin ABC transporter permease component; transport system permease protein complement(3223526..3224515) Dickeya zeae Ech1591 8120529 YP_003005136.1 CDS Dd1591_2834 NC_012912.1 3224512 3225327 R PFAM: periplasmic binding protein; KEGG: yps:YPTB0338 ABC transporter, periplasmic hemin-binding protein HmuT; periplasmic binding protein complement(3224512..3225327) Dickeya zeae Ech1591 8120530 YP_003005137.1 CDS Dd1591_2835 NC_012912.1 3225324 3226355 R PFAM: Haemin-degrading family protein; KEGG: ecf:ECH74115_4856 hemin transport protein HmuS; Hemin-degrading family protein complement(3225324..3226355) Dickeya zeae Ech1591 8120531 YP_003005138.1 CDS Dd1591_2836 NC_012912.1 3226598 3226702 R hypothetical protein complement(3226598..3226702) Dickeya zeae Ech1591 8120532 YP_003005139.1 CDS Dd1591_2837 NC_012912.1 3227419 3228369 D PFAM: protein of unknown function DUF535; KEGG: eta:ETA_30810 putative virulence protein; hypothetical protein 3227419..3228369 Dickeya zeae Ech1591 8120533 YP_003005140.1 CDS Dd1591_2838 NC_012912.1 3228407 3229168 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pag:PLES_39431 putative short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3228407..3229168) Dickeya zeae Ech1591 8120534 YP_003005141.1 CDS Dd1591_2840 NC_012912.1 3230370 3231266 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: eca:ECA1505 hypothetical protein; GntR family transcriptional regulator 3230370..3231266 Dickeya zeae Ech1591 8120536 YP_003005142.1 CDS Dd1591_2841 NC_012912.1 3231292 3232806 R hypothetical protein complement(3231292..3232806) Dickeya zeae Ech1591 8120537 YP_003005143.1 CDS Dd1591_2842 NC_012912.1 3233205 3234467 D hypothetical protein 3233205..3234467 Dickeya zeae Ech1591 8120538 YP_003005144.1 CDS Dd1591_2843 NC_012912.1 3234571 3236715 R PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: eca:ECA1448 hypothetical protein; hypothetical protein complement(3234571..3236715) Dickeya zeae Ech1591 8120539 YP_003005145.1 CDS Dd1591_2844 NC_012912.1 3236715 3237494 R PFAM: protein of unknown function DUF1017; KEGG: eca:ECA1447 hypothetical protein; hypothetical protein complement(3236715..3237494) Dickeya zeae Ech1591 8120540 YP_003005146.1 CDS Dd1591_2845 NC_012912.1 3237504 3238178 R KEGG: eca:ECA1446 putative lipoprotein; putative lipoprotein complement(3237504..3238178) Dickeya zeae Ech1591 8120541 YP_003005147.1 CDS Dd1591_2846 NC_012912.1 3238252 3238497 R hypothetical protein complement(3238252..3238497) Dickeya zeae Ech1591 8120542 YP_003005148.1 CDS Dd1591_2847 NC_012912.1 3239069 3240475 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(3239069..3240475) Dickeya zeae Ech1591 8120543 YP_003005149.1 CDS Dd1591_2848 NC_012912.1 3240754 3241653 R PFAM: Nucleotidyl transferase; KEGG: eca:ECA1443 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase complement(3240754..3241653) Dickeya zeae Ech1591 8120544 YP_003005150.1 CDS Dd1591_2849 NC_012912.1 3241737 3242903 R KEGG: aha:AHA_2880 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase ; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; nucleotide sugar dehydrogenase complement(3241737..3242903) Dickeya zeae Ech1591 8120545 YP_003005151.1 CDS Dd1591_2850 NC_012912.1 3243100 3244107 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: aha:AHA_2881 nucleotide sugar epimerase; NAD-dependent epimerase/dehydratase complement(3243100..3244107) Dickeya zeae Ech1591 8120546 YP_003005152.1 CDS Dd1591_2851 NC_012912.1 3244214 3245587 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase; KEGG: ecr:ECIAI1_2103 phosphomannomutase (PMM); Phosphomannomutase complement(3244214..3245587) Dickeya zeae Ech1591 8120547 YP_003005153.1 CDS Dd1591_2852 NC_012912.1 3245602 3247032 R KEGG: spe:Spro_1599 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(3245602..3247032) Dickeya zeae Ech1591 8120548 YP_003005154.1 CDS Dd1591_2853 NC_012912.1 3247387 3248223 R KEGG: kpn:KPN_02505 glycosyltransferase; glycosyltransferase complement(3247387..3248223) Dickeya zeae Ech1591 8120549 YP_003005155.1 CDS Dd1591_2854 NC_012912.1 3248400 3249671 R PFAM: polysaccharide biosynthesis protein; KEGG: aci:ACIAD0075 putative polysaccharide transport protein; polysaccharide biosynthesis protein complement(3248400..3249671) Dickeya zeae Ech1591 8120550 YP_003005156.1 CDS Dd1591_2855 NC_012912.1 3249668 3250588 R PFAM: glycosyl transferase family 2; KEGG: aci:ACIAD0074 glycosyl transferase family protein; glycosyl transferase family 2 complement(3249668..3250588) Dickeya zeae Ech1591 8120551 YP_003005157.1 CDS Dd1591_2856 NC_012912.1 3250668 3251525 R KEGG: eca:ECA1440 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase complement(3250668..3251525) Dickeya zeae Ech1591 8120552 YP_003005158.1 CDS Dd1591_2857 NC_012912.1 3251522 3252058 R KEGG: eca:ECA1441 dTDP-6-deoxy-D-glucose-3,5 epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3251522..3252058) Dickeya zeae Ech1591 8120553 YP_003005159.1 CDS Dd1591_2858 NC_012912.1 3252060 3252929 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: eca:ECA1442 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(3252060..3252929) Dickeya zeae Ech1591 8120554 YP_003005160.1 CDS Dd1591_2859 NC_012912.1 3252955 3254019 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: spe:Spro_0165 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(3252955..3254019) Dickeya zeae Ech1591 8120555 YP_003005161.1 CDS Dd1591_2860 NC_012912.1 3254044 3255450 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; putative UDP-glucose lipid carrier transferase complement(3254044..3255450) Dickeya zeae Ech1591 8120556 YP_003005162.1 CDS Dd1591_2861 NC_012912.1 3255476 3256393 R PFAM: glycosyl transferase family 2; KEGG: ecx:EcHS_A2189 glycosyl transferase, group 2 family protein; glycosyl transferase family 2 complement(3255476..3256393) Dickeya zeae Ech1591 8120557 YP_003005163.1 CDS Dd1591_2862 NC_012912.1 3256457 3257488 R PFAM: glycosyl transferase group 1; KEGG: aci:ACIAD0084 mannosyl transferase; glycosyl transferase group 1 complement(3256457..3257488) Dickeya zeae Ech1591 8120558 YP_003005164.1 CDS Dd1591_2863 NC_012912.1 3257590 3258792 R PFAM: glycosyl transferase group 1; KEGG: kpe:KPK_1659 glycosyl transferase, group 1 family protein; glycosyl transferase group 1 complement(3257590..3258792) Dickeya zeae Ech1591 8120559 YP_003005165.1 CDS Dd1591_2864 NC_012912.1 3259094 3260242 R PFAM: glycosyl transferase group 1; KEGG: kpe:KPK_1659 glycosyl transferase, group 1 family protein; glycosyl transferase group 1 complement(3259094..3260242) Dickeya zeae Ech1591 8120560 YP_003005166.1 CDS Dd1591_2865 NC_012912.1 3260429 3262600 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase complement(3260429..3262600) Dickeya zeae Ech1591 8120561 YP_003005167.1 CDS Dd1591_2866 NC_012912.1 3262617 3263051 R PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: eca:ECA1418 protein-tyrosine-phosphatase; protein tyrosine phosphatase complement(3262617..3263051) Dickeya zeae Ech1591 8120562 YP_003005168.1 CDS Dd1591_2867 NC_012912.1 3263071 3264207 R PFAM: polysaccharide export protein; KEGG: eca:ECA1417 putative polysaccharide export protein; polysaccharide export protein complement(3263071..3264207) Dickeya zeae Ech1591 8120563 YP_003005169.1 CDS Dd1591_2868 NC_012912.1 3265580 3267169 D PFAM: Integral membrane protein TerC; CBS domain containing protein; transporter-associated region; KEGG: spe:Spro_1580 integral membrane protein TerC; Integral membrane protein TerC 3265580..3267169 Dickeya zeae Ech1591 8120564 YP_003005170.1 CDS Dd1591_2869 NC_012912.1 3267677 3269491 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; putative assembly protein complement(3267677..3269491) Dickeya zeae Ech1591 8120565 YP_003005171.1 CDS dcd NC_012912.1 3269524 3270105 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(3269524..3270105) Dickeya zeae Ech1591 8120566 YP_003005172.1 CDS Dd1591_2871 NC_012912.1 3270209 3270850 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(3270209..3270850) Dickeya zeae Ech1591 8120567 YP_003005173.1 CDS Dd1591_2872 NC_012912.1 3271136 3272245 R KEGG: eca:ECA1410 putative ATPase; putative ATPase complement(3271136..3272245) Dickeya zeae Ech1591 8120568 YP_003005174.1 CDS metG NC_012912.1 3272525 3274558 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3272525..3274558 Dickeya zeae Ech1591 8120569 YP_003005175.1 CDS Dd1591_2874 NC_012912.1 3274673 3275998 D PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_05087 hypothetical protein; transposase IS4 family protein 3274673..3275998 Dickeya zeae Ech1591 8120570 YP_003005176.1 CDS Dd1591_2875 NC_012912.1 3276285 3276716 D PFAM: VirK family protein; KEGG: xac:XAC0435 VirK protein; VirK family protein 3276285..3276716 Dickeya zeae Ech1591 8120571 YP_003005177.1 CDS Dd1591_2876 NC_012912.1 3276956 3278032 D KEGG: eca:ECA1405 hypothetical protein; hypothetical protein 3276956..3278032 Dickeya zeae Ech1591 8120572 YP_003005178.1 CDS Dd1591_2877 NC_012912.1 3278057 3279307 D KEGG: eca:ECA1404 hypothetical protein; hypothetical protein 3278057..3279307 Dickeya zeae Ech1591 8120573 YP_003005179.1 CDS Dd1591_2878 NC_012912.1 3279376 3280371 R catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase complement(3279376..3280371) Dickeya zeae Ech1591 8120574 YP_003005180.1 CDS Dd1591_2879 NC_012912.1 3280552 3281373 D YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase 3280552..3281373 Dickeya zeae Ech1591 8120575 YP_003005181.1 CDS modC NC_012912.1 3281423 3282481 R Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein complement(3281423..3282481) Dickeya zeae Ech1591 8120576 YP_003005182.1 CDS Dd1591_2881 NC_012912.1 3282481 3283170 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1394 molybdate ABC transporter permease protein; molybdate ABC transporter inner membrane subunit complement(3282481..3283170) Dickeya zeae Ech1591 8120577 YP_003005183.1 CDS modA NC_012912.1 3283157 3283942 R with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein complement(3283157..3283942) Dickeya zeae Ech1591 8120578 YP_003005184.1 CDS Dd1591_2883 NC_012912.1 3284077 3284226 R KEGG: kpe:KPK_3803 hypothetical protein; hypothetical protein complement(3284077..3284226) Dickeya zeae Ech1591 8120579 YP_003005185.1 CDS Dd1591_2884 NC_012912.1 3284423 3285232 D represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 3284423..3285232 Dickeya zeae Ech1591 8120580 YP_003005186.1 CDS Dd1591_2885 NC_012912.1 3285315 3286784 D contains 2 ATP-binding cassettes; involved in the transport of molybdenum; putative molybdenum transport ATP-binding protein ModF 3285315..3286784 Dickeya zeae Ech1591 8120581 YP_003005187.1 CDS Dd1591_2886 NC_012912.1 3287042 3288058 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: eca:ECA1389 UDP-galactose-4-epimerase; UDP-galactose-4-epimerase 3287042..3288058 Dickeya zeae Ech1591 8120582 YP_003005188.1 CDS Dd1591_2887 NC_012912.1 3288155 3289243 D catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 3288155..3289243 Dickeya zeae Ech1591 8120583 YP_003005189.1 CDS Dd1591_2888 NC_012912.1 3289240 3290391 D TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: spe:Spro_1291 galactokinase; galactokinase 3289240..3290391 Dickeya zeae Ech1591 8120584 YP_003005190.1 CDS galM NC_012912.1 3290381 3291451 D catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 3290381..3291451 Dickeya zeae Ech1591 8120585 YP_003005191.1 CDS Dd1591_2890 NC_012912.1 3291572 3292015 D KEGG: eca:ECA1387 hypothetical protein; hypothetical protein 3291572..3292015 Dickeya zeae Ech1591 8120586 YP_003005192.1 CDS Dd1591_2891 NC_012912.1 3292088 3292498 D KEGG: eca:ECA1386 hypothetical protein; hypothetical protein 3292088..3292498 Dickeya zeae Ech1591 8120587 YP_003005193.1 CDS Dd1591_2892 NC_012912.1 3292511 3293770 D PFAM: outer membrane efflux protein; KEGG: eca:ECA1385 hypothetical protein; outer membrane efflux protein 3292511..3293770 Dickeya zeae Ech1591 8120588 YP_003005194.1 CDS Dd1591_2893 NC_012912.1 3293767 3295290 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: eca:ECA1384 putative copper efflux system protein; RND family efflux transporter MFP subunit 3293767..3295290 Dickeya zeae Ech1591 8120589 YP_003005195.1 CDS Dd1591_2894 NC_012912.1 3295287 3298424 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: eca:ECA1383 cation efflux system protein; heavy metal efflux pump, CzcA family 3295287..3298424 Dickeya zeae Ech1591 8120590 YP_003005196.1 CDS gpmA NC_012912.1 3298568 3299320 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 3298568..3299320 Dickeya zeae Ech1591 8120591 YP_003005197.1 CDS Dd1591_2896 NC_012912.1 3299419 3300471 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3299419..3300471) Dickeya zeae Ech1591 8120592 YP_003005198.1 CDS Dd1591_2897 NC_012912.1 3300757 3301482 R TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: spe:Spro_1283 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC complement(3300757..3301482) Dickeya zeae Ech1591 8120593 YP_003005199.1 CDS Dd1591_2898 NC_012912.1 3301504 3302553 R TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: esa:ESA_02596 quinolinate synthetase; quinolinate synthetase complex, subunit A complement(3301504..3302553) Dickeya zeae Ech1591 8118307 YP_003005200.1 CDS Dd1591_2899 NC_012912.1 3302756 3303475 R PFAM: protein of unknown function DUF554; KEGG: eca:ECA1376 hypothetical protein; hypothetical protein complement(3302756..3303475) Dickeya zeae Ech1591 8118308 YP_003005201.1 CDS Dd1591_2900 NC_012912.1 3304270 3305088 R TIGRFAM: tol-pal system protein YbgF; KEGG: eca:ECA1375 hypothetical protein; tol-pal system protein YbgF complement(3304270..3305088) Dickeya zeae Ech1591 8118311 YP_003005202.1 CDS Dd1591_2901 NC_012912.1 3305098 3305604 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: eca:ECA1374 peptidoglycan-associated outer membrane lipoprotein; peptidoglycan-associated outer membrane lipoprotein complement(3305098..3305604) Dickeya zeae Ech1591 8118312 YP_003005203.1 CDS tolB NC_012912.1 3305643 3306929 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(3305643..3306929) Dickeya zeae Ech1591 8118313 YP_003005204.1 CDS tolA NC_012912.1 3307062 3308261 R inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA complement(3307062..3308261) Dickeya zeae Ech1591 8118314 YP_003005205.1 CDS Dd1591_2904 NC_012912.1 3308340 3308765 R membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR complement(3308340..3308765) Dickeya zeae Ech1591 8118315 YP_003005206.1 CDS Dd1591_2905 NC_012912.1 3308778 3309464 R membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ complement(3308778..3309464) Dickeya zeae Ech1591 8118316 YP_003005207.1 CDS Dd1591_2906 NC_012912.1 3309461 3309865 R catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase YbgC complement(3309461..3309865) Dickeya zeae Ech1591 8118317 YP_003005208.1 CDS Dd1591_2907 NC_012912.1 3310000 3310290 R TIGRFAM: cyd operon protein YbgE; KEGG: eca:ECA1368 hypothetical protein; hypothetical protein complement(3310000..3310290) Dickeya zeae Ech1591 8118318 YP_003005209.1 CDS Dd1591_2908 NC_012912.1 3310287 3310403 R TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: eca:ECA1367 hypothetical protein; cyd operon protein YbgT complement(3310287..3310403) Dickeya zeae Ech1591 8118319 YP_003005210.1 CDS Dd1591_2909 NC_012912.1 3310421 3311560 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: eca:ECA1366 cytochrome d ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II complement(3310421..3311560) Dickeya zeae Ech1591 8118320 YP_003005211.1 CDS Dd1591_2910 NC_012912.1 3311573 3313138 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: eca:ECA1365 cytochrome d ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I complement(3311573..3313138) Dickeya zeae Ech1591 8118321 YP_003005212.1 CDS Dd1591_2911 NC_012912.1 3313837 3314709 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(3313837..3314709) Dickeya zeae Ech1591 8118322 YP_003005213.1 CDS sucC NC_012912.1 3314709 3315875 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(3314709..3315875) Dickeya zeae Ech1591 8118323 YP_003005214.1 CDS Dd1591_2913 NC_012912.1 3316015 3317241 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: eca:ECA1362 dihydrolipoamide acetyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(3316015..3317241) Dickeya zeae Ech1591 8118324 YP_003005215.1 CDS sucA NC_012912.1 3317259 3320066 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(3317259..3320066) Dickeya zeae Ech1591 8118325 YP_003005216.1 CDS Dd1591_2915 NC_012912.1 3320309 3321025 R TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: eca:ECA1360 succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(3320309..3321025) Dickeya zeae Ech1591 8118326 YP_003005217.1 CDS sdhA NC_012912.1 3321044 3322810 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(3321044..3322810) Dickeya zeae Ech1591 8118327 YP_003005218.1 CDS sdhD NC_012912.1 3322810 3323157 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: eca:ECA1358 succinate dehydrogenase cytochrome b556 small membrane subunit; succinate dehydrogenase cytochrome b556 small membrane subunit complement(3322810..3323157) Dickeya zeae Ech1591 8118328 YP_003005219.1 CDS Dd1591_2918 NC_012912.1 3323151 3323540 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: see:SNSL254_A0791 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit complement(3323151..3323540) Dickeya zeae Ech1591 8118329 YP_003005220.1 CDS gltA NC_012912.1 3324192 3325478 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3324192..3325478 Dickeya zeae Ech1591 8118330 YP_003005221.1 CDS Dd1591_2920 NC_012912.1 3325575 3326312 R PFAM: LamB/YcsF family protein; KEGG: yen:YE2953 hypothetical protein; LamB/YcsF family protein complement(3325575..3326312) Dickeya zeae Ech1591 8118331 YP_003005222.1 CDS Dd1591_2921 NC_012912.1 3326302 3327231 R KEGG: eca:ECA1352 putative allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2; urea amidolyase related protein complement(3326302..3327231) Dickeya zeae Ech1591 8118332 YP_003005223.1 CDS Dd1591_2922 NC_012912.1 3327225 3327884 R PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: eca:ECA1351 putative allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 complement(3327225..3327884) Dickeya zeae Ech1591 8118333 YP_003005224.1 CDS Dd1591_2923 NC_012912.1 3327974 3328717 R PFAM: protein of unknown function DUF34; KEGG: yen:YE2955 putative hydrolase-oxidase; hypothetical protein complement(3327974..3328717) Dickeya zeae Ech1591 8118334 YP_003005225.1 CDS Dd1591_2924 NC_012912.1 3328748 3330178 R UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase complement(3328748..3330178) Dickeya zeae Ech1591 8118335 YP_003005226.1 CDS Dd1591_2925 NC_012912.1 3330234 3331193 R PFAM: Protein of unknown function DUF1722; protein of unknown function DUF523; KEGG: eca:ECA1348 hypothetical protein; hypothetical protein complement(3330234..3331193) Dickeya zeae Ech1591 8118336 YP_003005227.1 CDS Dd1591_2926 NC_012912.1 3331386 3331592 R KEGG: eca:ECA1344 hypothetical protein; hypothetical protein complement(3331386..3331592) Dickeya zeae Ech1591 8118337 YP_003005228.1 CDS Dd1591_2927 NC_012912.1 3332080 3333765 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 3332080..3333765 Dickeya zeae Ech1591 8118338 YP_003005229.1 CDS Dd1591_2928 NC_012912.1 3333780 3335846 D One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 3333780..3335846 Dickeya zeae Ech1591 8118339 YP_003005230.1 CDS Dd1591_2929 NC_012912.1 3335862 3336437 D KEGG: eca:ECA1340 potassium-transporting ATPase C chain; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase, subunit C 3335862..3336437 Dickeya zeae Ech1591 8118340 YP_003005231.1 CDS Dd1591_2930 NC_012912.1 3336488 3339217 D sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 3336488..3339217 Dickeya zeae Ech1591 8118341 YP_003005232.1 CDS Dd1591_2931 NC_012912.1 3339214 3339903 D response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 3339214..3339903 Dickeya zeae Ech1591 8118342 YP_003005233.1 CDS Dd1591_2932 NC_012912.1 3339989 3340417 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA1337 hypothetical protein; hypothetical protein 3339989..3340417 Dickeya zeae Ech1591 8118343 YP_003005234.1 CDS Dd1591_2933 NC_012912.1 3340480 3342123 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(3340480..3342123) Dickeya zeae Ech1591 8118344 YP_003005235.1 CDS Dd1591_2934 NC_012912.1 3342149 3342688 R PFAM: SeqA family protein; KEGG: eca:ECA1335 replication initiation regulator SeqA; SeqA family protein complement(3342149..3342688) Dickeya zeae Ech1591 8118345 YP_003005236.1 CDS Dd1591_2935 NC_012912.1 3342931 3343713 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: eca:ECA1334 hypothetical protein; hypothetical protein 3342931..3343713 Dickeya zeae Ech1591 8118346 YP_003005237.1 CDS Dd1591_2936 NC_012912.1 3343979 3344260 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: eca:ECA1333 LexA regulated protein; LexA regulated protein 3343979..3344260 Dickeya zeae Ech1591 8118347 YP_003005238.1 CDS Dd1591_2937 NC_012912.1 3344303 3345997 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: eca:ECA1332 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3344303..3345997) Dickeya zeae Ech1591 8118348 YP_003005239.1 CDS Dd1591_2938 NC_012912.1 3346418 3346945 D TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: eca:ECA1330 flavodoxin FldA; flavodoxin 3346418..3346945 Dickeya zeae Ech1591 8118349 YP_003005240.1 CDS Dd1591_2939 NC_012912.1 3347288 3347734 D PFAM: ferric-uptake regulator; KEGG: spe:Spro_1236 ferric uptake regulator; ferric uptake regulator, Fur family 3347288..3347734 Dickeya zeae Ech1591 8118350 YP_003005241.1 CDS Dd1591_2940 NC_012912.1 3347808 3349466 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3347808..3349466) Dickeya zeae Ech1591 8118351 YP_003005242.1 CDS Dd1591_2941 NC_012912.1 3349631 3351103 R TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: eca:ECA1327 PTS system, N-acetylglucosamine-specific IIABC component; PTS system N-acetylglucosamine-specific transporter subunit IIBC complement(3349631..3351103) Dickeya zeae Ech1591 8118352 YP_003005243.1 CDS nagB NC_012912.1 3351442 3352242 D catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 3351442..3352242 Dickeya zeae Ech1591 8118353 YP_003005244.1 CDS Dd1591_2943 NC_012912.1 3352268 3353419 D KEGG: eca:ECA1325 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 3352268..3353419 Dickeya zeae Ech1591 8118354 YP_003005245.1 CDS Dd1591_2944 NC_012912.1 3353450 3354673 D PFAM: ROK family protein; KEGG: eca:ECA1324 N-acetylglucosamine repressor; ROK family protein 3353450..3354673 Dickeya zeae Ech1591 8118355 YP_003005246.1 CDS asnB NC_012912.1 3354981 3356645 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 3354981..3356645 Dickeya zeae Ech1591 8118356 YP_003005247.1 CDS Dd1591_2946 NC_012912.1 3357601 3357930 R PFAM: small multidrug resistance protein; KEGG: esa:ESA_01940 hypothetical protein; small multidrug resistance protein complement(3357601..3357930) Dickeya zeae Ech1591 8118363 YP_003005248.1 CDS ubiF NC_012912.1 3358109 3359275 R catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(3358109..3359275) Dickeya zeae Ech1591 8118364 YP_003005249.1 CDS Dd1591_2948 NC_012912.1 3359514 3360944 D KEGG: eca:ECA1319 hypothetical protein; TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase enzyme MiaB 3359514..3360944 Dickeya zeae Ech1591 8118365 YP_003005250.1 CDS Dd1591_2949 NC_012912.1 3361178 3362230 D PFAM: PhoH family protein; KEGG: spe:Spro_1218 PhoH family protein; PhoH family protein 3361178..3362230 Dickeya zeae Ech1591 8118366 YP_003005251.1 CDS Dd1591_2950 NC_012912.1 3362227 3362712 D PFAM: protein of unknown function UPF0054; KEGG: eca:ECA1317 putative metalloprotease; putative metalloprotease 3362227..3362712 Dickeya zeae Ech1591 8118367 YP_003005252.1 CDS Dd1591_2951 NC_012912.1 3362807 3363676 D PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: eca:ECA1316 magnesium and cobalt efflux protein corc; CBS domain-containing protein 3362807..3363676 Dickeya zeae Ech1591 8118368 YP_003005253.1 CDS lnt NC_012912.1 3363684 3365213 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3363684..3365213 Dickeya zeae Ech1591 8118369 YP_003005254.1 CDS Dd1591_2953 NC_012912.1 3365589 3366482 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA1314 glutamate and aspartate transporter subunit; extracellular solute-binding protein family 3 3365589..3366482 Dickeya zeae Ech1591 8118370 YP_003005255.1 CDS Dd1591_2954 NC_012912.1 3366646 3367386 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1313 glutamate/aspartate transport system permease protein; polar amino acid ABC transporter permease 3366646..3367386 Dickeya zeae Ech1591 8118371 YP_003005256.1 CDS Dd1591_2955 NC_012912.1 3367387 3368061 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA1312 glutamate/aspartate transport system permease protein; polar amino acid ABC transporter permease 3367387..3368061 Dickeya zeae Ech1591 8118372 YP_003005257.1 CDS Dd1591_2956 NC_012912.1 3368061 3368786 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA1311 glutamate/aspartate transport ATP-binding protein; ABC transporter 3368061..3368786 Dickeya zeae Ech1591 8118373 YP_003005258.1 CDS Dd1591_2957 NC_012912.1 3368849 3369328 R PFAM: protein of unknown function DUF1451; KEGG: eca:ECA1310 hypothetical protein; hypothetical protein complement(3368849..3369328) Dickeya zeae Ech1591 8118374 YP_003005259.1 CDS leuS NC_012912.1 3369599 3372181 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3369599..3372181 Dickeya zeae Ech1591 8118375 YP_003005260.1 CDS Dd1591_2959 NC_012912.1 3372196 3372750 D rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 3372196..3372750 Dickeya zeae Ech1591 8118376 YP_003005261.1 CDS holA NC_012912.1 3372747 3373778 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 3372747..3373778 Dickeya zeae Ech1591 8118377 YP_003005262.1 CDS nadD NC_012912.1 3373783 3374442 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 3373783..3374442 Dickeya zeae Ech1591 8118378 YP_003005263.1 CDS Dd1591_2962 NC_012912.1 3374620 3374937 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: esa:ESA_02690 hypothetical protein; hypothetical protein 3374620..3374937 Dickeya zeae Ech1591 8118379 YP_003005264.1 CDS Dd1591_2963 NC_012912.1 3374939 3375409 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3374939..3375409 Dickeya zeae Ech1591 8118380 YP_003005265.1 CDS Dd1591_2964 NC_012912.1 3375446 3377356 D KEGG: eca:ECA1303 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3375446..3377356 Dickeya zeae Ech1591 8118381 YP_003005266.1 CDS Dd1591_2965 NC_012912.1 3377364 3378476 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: yen:YE3003 cell wall shape-determining protein; cell wall shape-determining protein 3377364..3378476 Dickeya zeae Ech1591 8118382 YP_003005267.1 CDS Dd1591_2966 NC_012912.1 3378486 3379631 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: eca:ECA1301 rare lipoprotein A; rare lipoprotein A 3378486..3379631 Dickeya zeae Ech1591 8118383 YP_003005268.1 CDS Dd1591_2967 NC_012912.1 3379814 3381025 D penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase fraction A 3379814..3381025 Dickeya zeae Ech1591 8118384 YP_003005269.1 CDS Dd1591_2968 NC_012912.1 3381161 3381424 D PFAM: protein of unknown function DUF493; KEGG: spe:Spro_1197 hypothetical protein; hypothetical protein 3381161..3381424 Dickeya zeae Ech1591 8118385 YP_003005270.1 CDS Dd1591_2969 NC_012912.1 3381530 3382264 D KEGG: eca:ECA1298 lipoyltransferase; TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 3381530..3382264 Dickeya zeae Ech1591 8118386 YP_003005271.1 CDS Dd1591_2970 NC_012912.1 3382436 3383401 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3382436..3383401 Dickeya zeae Ech1591 8116947 YP_003005272.1 CDS Dd1591_2971 NC_012912.1 3383506 3383715 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: eca:ECA1296 twin argininte translocase protein A; twin-arginine translocation protein, TatA/E family subunit complement(3383506..3383715) Dickeya zeae Ech1591 8116948 YP_003005273.1 CDS Dd1591_2972 NC_012912.1 3383868 3384656 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eta:ETA_23610 putative hydrolase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(3383868..3384656) Dickeya zeae Ech1591 8116949 YP_003005274.1 CDS Dd1591_2973 NC_012912.1 3384868 3385251 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: eca:ECA1295 hypothetical protein; CrcB protein 3384868..3385251 Dickeya zeae Ech1591 8116950 YP_003005275.1 CDS cspE NC_012912.1 3385317 3385526 R member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE complement(3385317..3385526) Dickeya zeae Ech1591 8116951 YP_003005276.1 CDS Dd1591_2975 NC_012912.1 3386523 3386906 D PFAM: arsenate reductase and related; KEGG: eca:ECA1292 hypothetical protein; arsenate reductase-like protein 3386523..3386906 Dickeya zeae Ech1591 8116952 YP_003005277.1 CDS Dd1591_2976 NC_012912.1 3386887 3388014 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 3386887..3388014 Dickeya zeae Ech1591 8116953 YP_003005278.1 CDS Dd1591_2977 NC_012912.1 3388011 3388685 D PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: eca:ECA1290 putative D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 3388011..3388685 Dickeya zeae Ech1591 8116954 YP_003005279.1 CDS Dd1591_2978 NC_012912.1 3388724 3388912 D KEGG: ypi:YpsIP31758_1253 hypothetical protein; hypothetical protein 3388724..3388912 Dickeya zeae Ech1591 8116955 YP_003005280.1 CDS Dd1591_2979 NC_012912.1 3389028 3389714 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH complement(3389028..3389714) Dickeya zeae Ech1591 8116956 YP_003005281.1 CDS Dd1591_2980 NC_012912.1 3389947 3391977 R PFAM: protein of unknown function DUF699 ATPase putative; GCN5-related N-acetyltransferase; KEGG: eca:ECA1266 putative acetyltransferase; hypothetical protein complement(3389947..3391977) Dickeya zeae Ech1591 8116957 YP_003005282.1 CDS Dd1591_2981 NC_012912.1 3391997 3392449 R PFAM: protein of unknown function DUF441; KEGG: eca:ECA1265 hypothetical protein; hypothetical protein complement(3391997..3392449) Dickeya zeae Ech1591 8116958 YP_003005283.1 CDS Dd1591_2982 NC_012912.1 3392662 3393375 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(3392662..3393375) Dickeya zeae Ech1591 8116959 YP_003005284.1 CDS Dd1591_2983 NC_012912.1 3393795 3394835 R PFAM: NlpBDapX family lipoprotein; KEGG: eca:ECA1263 lipoprotein; lipoprotein complement(3393795..3394835) Dickeya zeae Ech1591 8116960 YP_003005285.1 CDS Dd1591_2984 NC_012912.1 3394852 3395730 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(3394852..3395730) Dickeya zeae Ech1591 8116961 YP_003005286.1 CDS Dd1591_2985 NC_012912.1 3395833 3396447 D PFAM: amino acid-binding ACT domain protein; KEGG: spe:Spro_3510 glycine cleavage system transcriptional repressor; amino acid-binding ACT domain-containing protein 3395833..3396447 Dickeya zeae Ech1591 8116962 YP_003005287.1 CDS bcp NC_012912.1 3396450 3396917 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 3396450..3396917 Dickeya zeae Ech1591 8116963 YP_003005288.1 CDS Dd1591_2987 NC_012912.1 3397094 3398557 D PFAM: peptidase M48 Ste24p; KEGG: eca:ECA1259 hypothetical protein; peptidase M48 Ste24p 3397094..3398557 Dickeya zeae Ech1591 8116964 YP_003005289.1 CDS Dd1591_2988 NC_012912.1 3398572 3398928 D KEGG: esa:ESA_00766 hypothetical protein; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 3398572..3398928 Dickeya zeae Ech1591 8116965 YP_003005290.1 CDS Dd1591_2989 NC_012912.1 3398938 3399645 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(3398938..3399645) Dickeya zeae Ech1591 8116966 YP_003005291.1 CDS Dd1591_2990 NC_012912.1 3399761 3401050 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: eca:ECA1256 uracil transporter; uracil transporter complement(3399761..3401050) Dickeya zeae Ech1591 8116967 YP_003005292.1 CDS Dd1591_2991 NC_012912.1 3401231 3401857 R KEGG: eca:ECA1255 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase complement(3401231..3401857) Dickeya zeae Ech1591 8116968 YP_003005293.1 CDS Dd1591_2992 NC_012912.1 3402132 3403169 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3402132..3403169 Dickeya zeae Ech1591 8116969 YP_003005294.1 CDS Dd1591_2993 NC_012912.1 3403169 3403807 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: yen:YE1125 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 3403169..3403807 Dickeya zeae Ech1591 8116970 YP_003005295.1 CDS Dd1591_2994 NC_012912.1 3404059 3405057 D negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 3404059..3405057 Dickeya zeae Ech1591 8116971 YP_003005296.1 CDS Dd1591_2995 NC_012912.1 3405475 3406470 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: efe:EFER_2235 methyl-galactoside transporter subunit ; periplasmic-binding component of ABC superfamily; periplasmic binding protein/LacI transcriptional regulator 3405475..3406470 Dickeya zeae Ech1591 8116972 YP_003005297.1 CDS Dd1591_2996 NC_012912.1 3406592 3408112 D with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 3406592..3408112 Dickeya zeae Ech1591 8116973 YP_003005298.1 CDS mglC NC_012912.1 3408132 3409142 D ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane component 3408132..3409142 Dickeya zeae Ech1591 8116974 YP_003005299.1 CDS Dd1591_2998 NC_012912.1 3409397 3410218 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: pfo:Pfl01_2802 extracellular solute-binding protein; extracellular solute-binding protein family 3 3409397..3410218 Dickeya zeae Ech1591 8116975 YP_003005300.1 CDS Dd1591_2999 NC_012912.1 3410218 3411063 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl01_2801 amino acid ABC transporter permease; polar amino acid ABC transporter permease 3410218..3411063 Dickeya zeae Ech1591 8116976 YP_003005301.1 CDS Dd1591_3000 NC_012912.1 3411245 3412354 D PFAM: periplasmic binding protein; KEGG: yen:YE3190 hypothetical protein; periplasmic binding protein 3411245..3412354 Dickeya zeae Ech1591 8116977 YP_003005302.1 CDS Dd1591_3001 NC_012912.1 3412347 3414512 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spe:Spro_1016 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3412347..3414512 Dickeya zeae Ech1591 8116978 YP_003005303.1 CDS Dd1591_3002 NC_012912.1 3414645 3415205 D PFAM: GCN5-related N-acetyltransferase; KEGG: yen:YE1124 spermidine acetyltransferase; Diamine N-acetyltransferase 3414645..3415205 Dickeya zeae Ech1591 8116979 YP_003005304.1 CDS Dd1591_3003 NC_012912.1 3415246 3417678 R PFAM: protein of unknown function DUF214; KEGG: eca:ECA1224 hypothetical protein; hypothetical protein complement(3415246..3417678) Dickeya zeae Ech1591 8116980 YP_003005305.1 CDS Dd1591_3004 NC_012912.1 3417675 3418361 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_1158 putative ABC transporter ATP-binding protein YbbA; ABC transporter complement(3417675..3418361) Dickeya zeae Ech1591 8116981 YP_003005306.1 CDS Dd1591_3005 NC_012912.1 3418422 3418970 D PFAM: lipolytic protein G-D-S-L family; KEGG: esa:ESA_02772 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Lysophospholipase 3418422..3418970 Dickeya zeae Ech1591 8116982 YP_003005307.1 CDS Dd1591_3006 NC_012912.1 3419034 3419810 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eca:ECA1221 short chain dehydrogenase; short chain dehydrogenase 3419034..3419810 Dickeya zeae Ech1591 8116983 YP_003005308.1 CDS Dd1591_3007 NC_012912.1 3419872 3420732 D PFAM: Thioredoxin domain; KEGG: eca:ECA1220 putative thioredoxin; Thioredoxin domain-containing protein 3419872..3420732 Dickeya zeae Ech1591 8116984 YP_003005309.1 CDS Dd1591_3008 NC_012912.1 3420790 3421983 R TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: eca:ECA1219 competence damage-inducible protein A; competence damage-inducible protein A complement(3420790..3421983) Dickeya zeae Ech1591 8116985 YP_003005310.1 CDS Dd1591_3009 NC_012912.1 3422123 3422668 R PFAM: YfaZ family protein; KEGG: eca:ECA1217 hypothetical protein; YfaZ family protein complement(3422123..3422668) Dickeya zeae Ech1591 8116986 YP_003005311.1 CDS Dd1591_3010 NC_012912.1 3422854 3424242 R TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: eca:ECA1215 O-succinylbenzoic acid--CoA ligase; O-succinylbenzoic acid--CoA ligase complement(3422854..3424242) Dickeya zeae Ech1591 8116987 YP_003005312.1 CDS Dd1591_3011 NC_012912.1 3424230 3425198 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(3424230..3425198) Dickeya zeae Ech1591 8116988 YP_003005313.1 CDS Dd1591_3012 NC_012912.1 3425198 3426055 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(3425198..3426055) Dickeya zeae Ech1591 8116989 YP_003005314.1 CDS Dd1591_3013 NC_012912.1 3426039 3426830 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB complement(3426039..3426830) Dickeya zeae Ech1591 8116990 YP_003005315.1 CDS Dd1591_3014 NC_012912.1 3426830 3428506 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(3426830..3428506) Dickeya zeae Ech1591 8116991 YP_003005316.1 CDS Dd1591_3015 NC_012912.1 3428605 3429930 R TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: eca:ECA1210 menaquinone-specific isochorismate synthase; isochorismate synthase complement(3428605..3429930) Dickeya zeae Ech1591 8116992 YP_003005317.1 CDS Dd1591_3016 NC_012912.1 3431059 3433728 D KEGG: eca:ECA1204 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 3431059..3433728 Dickeya zeae Ech1591 8116993 YP_003005318.1 CDS Dd1591_3017 NC_012912.1 3433734 3434384 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 3433734..3434384 Dickeya zeae Ech1591 8116994 YP_003005319.1 CDS Dd1591_3018 NC_012912.1 3434445 3437312 R PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: eca:ECA1202 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(3434445..3437312) Dickeya zeae Ech1591 8116995 YP_003005320.1 CDS Dd1591_3019 NC_012912.1 3437435 3440068 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(3437435..3440068) Dickeya zeae Ech1591 8116996 YP_003005321.1 CDS Dd1591_3020 NC_012912.1 3440323 3441072 D KEGG: eca:ECA1200 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase 3440323..3441072 Dickeya zeae Ech1591 8116997 YP_003005322.1 CDS Dd1591_3021 NC_012912.1 3441581 3443869 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3441581..3443869 Dickeya zeae Ech1591 8116998 YP_003005323.1 CDS nrdB NC_012912.1 3444036 3445166 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 3444036..3445166 Dickeya zeae Ech1591 8116999 YP_003005324.1 CDS Dd1591_3023 NC_012912.1 3445172 3445432 D plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin YfaE 3445172..3445432 Dickeya zeae Ech1591 8117000 YP_003005325.1 CDS Dd1591_3024 NC_012912.1 3445567 3446481 D PFAM: band 7 protein; SMART: band 7 protein; KEGG: eca:ECA1196 hypothetical protein; hypothetical protein 3445567..3446481 Dickeya zeae Ech1591 8117001 YP_003005326.1 CDS Dd1591_3025 NC_012912.1 3446484 3446939 D PFAM: protein of unknown function DUF107; KEGG: eca:ECA1195 hypothetical protein; hypothetical protein 3446484..3446939 Dickeya zeae Ech1591 8117002 YP_003005327.1 CDS Dd1591_3026 NC_012912.1 3447053 3447466 R KEGG: eca:ECA1194 copper efflux regulator; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator complement(3447053..3447466) Dickeya zeae Ech1591 8117003 YP_003005328.1 CDS Dd1591_3027 NC_012912.1 3447590 3450409 D TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: eca:ECA1193 copper exporting ATPase; copper-translocating P-type ATPase 3447590..3450409 Dickeya zeae Ech1591 8117004 YP_003005329.1 CDS Dd1591_3028 NC_012912.1 3450590 3451402 D PFAM: GumN family protein; KEGG: eca:ECA1192 hypothetical protein; GumN family protein 3450590..3451402 Dickeya zeae Ech1591 8117005 YP_003005330.1 CDS Dd1591_3029 NC_012912.1 3451420 3451899 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: eca:ECA1191 hypothetical protein; hypothetical protein 3451420..3451899 Dickeya zeae Ech1591 8117006 YP_003005331.1 CDS Dd1591_3030 NC_012912.1 3451999 3453402 R PFAM: glycoside hydrolase family 28; KEGG: eca:ECA1190 putative polygalacturonase; glycoside hydrolase family 28 complement(3451999..3453402) Dickeya zeae Ech1591 8117007 YP_003005332.1 CDS Dd1591_3031 NC_012912.1 3453682 3455271 R PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: bac:BamMC406_6172 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3453682..3455271) Dickeya zeae Ech1591 8117008 YP_003005333.1 CDS ushA NC_012912.1 3456080 3457732 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor complement(3456080..3457732) Dickeya zeae Ech1591 8117009 YP_003005334.1 CDS Dd1591_3033 NC_012912.1 3458225 3459910 D YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; putative cation:proton antiport protein 3458225..3459910 Dickeya zeae Ech1591 8117010 YP_003005335.1 CDS Dd1591_3034 NC_012912.1 3459965 3460927 R KEGG: eca:ECA1181 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase; ferrochelatase complement(3459965..3460927) Dickeya zeae Ech1591 8117011 YP_003005336.1 CDS Dd1591_3035 NC_012912.1 3461135 3461779 R TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: spe:Spro_1139 nucleoside-triphosphate--adenylate kinase; adenylate kinase complement(3461135..3461779) Dickeya zeae Ech1591 8117012 YP_003005337.1 CDS Dd1591_3036 NC_012912.1 3462081 3463970 R molecular chaperone; heat shock protein 90 complement(3462081..3463970) Dickeya zeae Ech1591 8117013 YP_003005338.1 CDS Dd1591_3037 NC_012912.1 3464152 3464757 R KEGG: spe:Spro_1137 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; TOPRIM domain protein; SMART: Toprim sub domain protein; recombination protein RecR complement(3464152..3464757) Dickeya zeae Ech1591 8117014 YP_003005339.1 CDS Dd1591_3038 NC_012912.1 3464757 3465086 R PFAM: conserved hypothetical protein; KEGG: see:SNSL254_A0536 hypothetical protein; hypothetical protein complement(3464757..3465086) Dickeya zeae Ech1591 8117015 YP_003005340.1 CDS Dd1591_3039 NC_012912.1 3465130 3467166 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(3465130..3467166) Dickeya zeae Ech1591 8117016 YP_003005341.1 CDS Dd1591_3040 NC_012912.1 3467241 3467789 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(3467241..3467789) Dickeya zeae Ech1591 8117017 YP_003005342.1 CDS Dd1591_3041 NC_012912.1 3467968 3468336 R PFAM: protein of unknown function DUF454; KEGG: esa:ESA_02802 hypothetical protein; hypothetical protein complement(3467968..3468336) Dickeya zeae Ech1591 8117018 YP_003005343.1 CDS Dd1591_3042 NC_012912.1 3468464 3469234 D PFAM: tRNA-hydroxylase; KEGG: vsp:VS_2052 tRNA-hydroxylase; tRNA-hydroxylase 3468464..3469234 Dickeya zeae Ech1591 8117019 YP_003005344.1 CDS Dd1591_3043 NC_012912.1 3469299 3469832 D PFAM: Primosomal replication priB and priC; KEGG: eca:ECA1173 primosomal replication protein N''; Primosomal replication priB and priC 3469299..3469832 Dickeya zeae Ech1591 8117020 YP_003005345.1 CDS Dd1591_3044 NC_012912.1 3469911 3470078 D KEGG: eta:ETA_24780 hypothetical protein; hypothetical protein 3469911..3470078 Dickeya zeae Ech1591 8117021 YP_003005346.1 CDS Dd1591_3045 NC_012912.1 3470148 3473549 R small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA complement(3470148..3473549) Dickeya zeae Ech1591 8117022 YP_003005347.1 CDS Dd1591_3046 NC_012912.1 3473703 3474353 R regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR complement(3473703..3474353) Dickeya zeae Ech1591 8117023 YP_003005348.1 CDS Dd1591_3047 NC_012912.1 3474496 3475686 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA1170 acriflavine resistance protein A; RND family efflux transporter MFP subunit 3474496..3475686 Dickeya zeae Ech1591 8117024 YP_003005349.1 CDS Dd1591_3048 NC_012912.1 3475703 3478846 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: eca:ECA1169 acriflavin resistance protein B; transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3475703..3478846 Dickeya zeae Ech1591 8117025 YP_003005350.1 CDS Dd1591_3049 NC_012912.1 3479014 3479265 D TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: spe:Spro_1125 50S ribosomal protein L31 type B; 50S ribosomal protein L31 3479014..3479265 Dickeya zeae Ech1591 8117026 YP_003005351.1 CDS rpmJ NC_012912.1 3479281 3479424 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 3479281..3479424 Dickeya zeae Ech1591 8117747 YP_003005352.1 CDS Dd1591_3051 NC_012912.1 3479933 3480301 D KEGG: eca:ECA1166 hypothetical protein; hypothetical protein 3479933..3480301 Dickeya zeae Ech1591 8117748 YP_003005353.1 CDS Dd1591_3052 NC_012912.1 3480355 3480558 D with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 3480355..3480558 Dickeya zeae Ech1591 8117749 YP_003005354.1 CDS Dd1591_3053 NC_012912.1 3481137 3481463 D TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: eca:ECA1164 putative 6-O-methylguanine DNA methyltransferase; methylated-DNA/protein-cysteine methyltransferase 3481137..3481463 Dickeya zeae Ech1591 8117751 YP_003005355.1 CDS Dd1591_3054 NC_012912.1 3481493 3482050 R KEGG: eca:ECA1163 lipoprotein; lipoprotein complement(3481493..3482050) Dickeya zeae Ech1591 8117752 YP_003005356.1 CDS Dd1591_3055 NC_012912.1 3482269 3483132 D TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: eca:ECA1162 acyl-CoA thioesterase II; acyl-CoA thioesterase II 3482269..3483132 Dickeya zeae Ech1591 8117753 YP_003005357.1 CDS Dd1591_3056 NC_012912.1 3483246 3484538 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: eca:ECA1161 ammonium transporter; ammonium transporter complement(3483246..3484538) Dickeya zeae Ech1591 8117754 YP_003005358.1 CDS Dd1591_3057 NC_012912.1 3484582 3484920 R indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 complement(3484582..3484920) Dickeya zeae Ech1591 8117755 YP_003005359.1 CDS Dd1591_3058 NC_012912.1 3485214 3487007 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: eca:ECA1159 putative multidrug transporter membrane\ATP-binding components; putative multidrug transporter membrane\ATP-binding protein complement(3485214..3487007) Dickeya zeae Ech1591 8117756 YP_003005360.1 CDS Dd1591_3059 NC_012912.1 3487000 3488766 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: eca:ECA1158 putative multidrug transporter membrane\ATP-binding components; putative multidrug transporter membrane\ATP-binding protein complement(3487000..3488766) Dickeya zeae Ech1591 8117757 YP_003005361.1 CDS Dd1591_3060 NC_012912.1 3488848 3489309 R PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: eca:ECA1157 transcription regulator AsnC; AsnC family transcriptional regulator complement(3488848..3489309) Dickeya zeae Ech1591 8117758 YP_003005362.1 CDS Dd1591_3061 NC_012912.1 3489487 3490536 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: eca:ECA1156 putative pyridoxal-phosphate dependent protein; Pyridoxal-5'-phosphate-dependent protein subunit beta 3489487..3490536 Dickeya zeae Ech1591 8117759 YP_003005363.1 CDS Dd1591_3062 NC_012912.1 3490651 3491346 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: eca:ECA1155 queuosine biosynthesis protein QueC; exsB protein 3490651..3491346 Dickeya zeae Ech1591 8117760 YP_003005364.1 CDS Dd1591_3063 NC_012912.1 3491447 3491839 R TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: eca:ECA1153 hypothetical protein; competence protein ComEA helix-hairpin-helix repeat protein complement(3491447..3491839) Dickeya zeae Ech1591 8117761 YP_003005365.1 CDS Dd1591_3064 NC_012912.1 3491978 3493858 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: eca:ECA1152 peptidyl-prolyl cis-trans isomerase (rotamase D); peptidyl-prolyl cis-trans isomerase (rotamase D) complement(3491978..3493858) Dickeya zeae Ech1591 8117762 YP_003005366.1 CDS Dd1591_3065 NC_012912.1 3494113 3494385 R histone-like DNA-binding protein; transcriptional regulator HU subunit beta complement(3494113..3494385) Dickeya zeae Ech1591 8117763 YP_003005367.1 CDS Dd1591_3066 NC_012912.1 3494580 3496943 R KEGG: eca:ECA1150 DNA-binding ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase; DNA-binding ATP-dependent protease La complement(3494580..3496943) Dickeya zeae Ech1591 8117764 YP_003005368.1 CDS clpX NC_012912.1 3497133 3498407 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3497133..3498407) Dickeya zeae Ech1591 8117765 YP_003005369.1 CDS Dd1591_3068 NC_012912.1 3498535 3499158 R KEGG: sgl:SG0671 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP complement(3498535..3499158) Dickeya zeae Ech1591 8117766 YP_003005370.1 CDS tig NC_012912.1 3499547 3500851 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3499547..3500851) Dickeya zeae Ech1591 8117767 YP_003005371.1 CDS Dd1591_3070 NC_012912.1 3501162 3501476 R PFAM: BolA family protein; KEGG: eca:ECA1146 transcriptional regulator BolA; BolA family protein complement(3501162..3501476) Dickeya zeae Ech1591 8117768 YP_003005372.1 CDS Dd1591_3071 NC_012912.1 3501794 3502372 D PFAM: Uncharacterized lipoprotein; KEGG: eca:ECA1145 hypothetical protein; hypothetical protein 3501794..3502372 Dickeya zeae Ech1591 8117769 YP_003005373.1 CDS ampG NC_012912.1 3502431 3503900 D in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 3502431..3503900 Dickeya zeae Ech1591 8117770 YP_003005374.1 CDS Dd1591_3073 NC_012912.1 3504436 3505389 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome c oxidase subunit II; KEGG: eca:ECA1143 cytochrome o ubiquinol oxidase subunit II; cytochrome o ubiquinol oxidase subunit II 3504436..3505389 Dickeya zeae Ech1591 8117771 YP_003005375.1 CDS Dd1591_3074 NC_012912.1 3505410 3507401 D KEGG: eca:ECA1142 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 3505410..3507401 Dickeya zeae Ech1591 8117772 YP_003005376.1 CDS Dd1591_3075 NC_012912.1 3507391 3508005 D TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: eca:ECA1141 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 3507391..3508005 Dickeya zeae Ech1591 8117773 YP_003005377.1 CDS Dd1591_3076 NC_012912.1 3508005 3508337 D TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: eca:ECA1140 cytochrome o ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 3508005..3508337 Dickeya zeae Ech1591 8117774 YP_003005378.1 CDS Dd1591_3077 NC_012912.1 3508351 3509244 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 3508351..3509244 Dickeya zeae Ech1591 8117775 YP_003005379.1 CDS Dd1591_3078 NC_012912.1 3509393 3510766 D PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1138 transporter; major facilitator superfamily protein 3509393..3510766 Dickeya zeae Ech1591 8117776 YP_003005380.1 CDS Dd1591_3079 NC_012912.1 3510913 3511404 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(3510913..3511404) Dickeya zeae Ech1591 8117777 YP_003005381.1 CDS Dd1591_3080 NC_012912.1 3511572 3512492 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 3511572..3512492 Dickeya zeae Ech1591 8117778 YP_003005382.1 CDS Dd1591_3081 NC_012912.1 3512455 3513051 D TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: eca:ECA1135 hypothetical protein; DJ-1 family protein 3512455..3513051 Dickeya zeae Ech1591 8117779 YP_003005383.1 CDS Dd1591_3082 NC_012912.1 3513121 3514569 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(3513121..3514569) Dickeya zeae Ech1591 8117780 YP_003005384.1 CDS Dd1591_3083 NC_012912.1 3514834 3515082 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: eca:ECA1133 exodeoxyribonuclease VII small subunit; exodeoxyribonuclease VII small subunit 3514834..3515082 Dickeya zeae Ech1591 8117781 YP_003005385.1 CDS Dd1591_3084 NC_012912.1 3515079 3515990 D PFAM: Polyprenyl synthetase; KEGG: eca:ECA1132 geranyltranstransferase; geranyltranstransferase 3515079..3515990 Dickeya zeae Ech1591 8117782 YP_003005386.1 CDS Dd1591_3085 NC_012912.1 3516017 3517879 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3516017..3517879 Dickeya zeae Ech1591 8117783 YP_003005387.1 CDS Dd1591_3086 NC_012912.1 3517980 3518492 R hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A complement(3517980..3518492) Dickeya zeae Ech1591 8117784 YP_003005388.1 CDS Dd1591_3087 NC_012912.1 3518473 3519447 R catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase complement(3518473..3519447) Dickeya zeae Ech1591 8117785 YP_003005389.1 CDS nusB NC_012912.1 3519508 3519927 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(3519508..3519927) Dickeya zeae Ech1591 8117786 YP_003005390.1 CDS Dd1591_3089 NC_012912.1 3519950 3520423 R KEGG: pmr:PMI0082 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase complement(3519950..3520423) Dickeya zeae Ech1591 8117787 YP_003005391.1 CDS Dd1591_3090 NC_012912.1 3520544 3521656 R KEGG: eca:ECA1126 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD complement(3520544..3521656) Dickeya zeae Ech1591 8117788 YP_003005392.1 CDS nrdR NC_012912.1 3521722 3522171 R PFAM: ATP-cone domain protein; KEGG: eca:ECA1125 transcriptional regulator NrdR; transcriptional regulator NrdR complement(3521722..3522171) Dickeya zeae Ech1591 8117789 YP_003005393.1 CDS Dd1591_3092 NC_012912.1 3522632 3525343 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 3522632..3525343 Dickeya zeae Ech1591 8117790 YP_003005394.1 CDS Dd1591_3093 NC_012912.1 3525522 3526091 D KEGG: eca:ECA1124 hypothetical protein; hypothetical protein 3525522..3526091 Dickeya zeae Ech1591 8117791 YP_003005395.1 CDS secF NC_012912.1 3526217 3527188 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(3526217..3527188) Dickeya zeae Ech1591 8117792 YP_003005396.1 CDS secD NC_012912.1 3527199 3529013 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3527199..3529013) Dickeya zeae Ech1591 8117793 YP_003005397.1 CDS Dd1591_3096 NC_012912.1 3529075 3529410 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: efe:EFER_2618 SecYEG protein translocase auxillary subunit; preprotein translocase subunit YajC complement(3529075..3529410) Dickeya zeae Ech1591 8117794 YP_003005398.1 CDS tgt NC_012912.1 3529477 3530640 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(3529477..3530640) Dickeya zeae Ech1591 8117795 YP_003005399.1 CDS queA NC_012912.1 3530730 3531803 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(3530730..3531803) Dickeya zeae Ech1591 8117796 YP_003005400.1 CDS Dd1591_3099 NC_012912.1 3531957 3532562 D PFAM: protein of unknown function DUF479; KEGG: eca:ECA1118 hypothetical protein; (Acyl-carrier-protein) phosphodiesterase 3531957..3532562 Dickeya zeae Ech1591 8117797 YP_003005401.1 CDS Dd1591_3100 NC_012912.1 3532740 3533342 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: yen:YE3174 putative alkyl hydroperoxide reductase subunit C; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 3532740..3533342 Dickeya zeae Ech1591 8117798 YP_003005402.1 CDS proY NC_012912.1 3533421 3534773 R cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; putative proline-specific permease complement(3533421..3534773) Dickeya zeae Ech1591 8117799 YP_003005403.1 CDS Dd1591_3102 NC_012912.1 3534852 3536174 R TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; KEGG: eca:ECA1114 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein complement(3534852..3536174) Dickeya zeae Ech1591 8117800 YP_003005404.1 CDS Dd1591_3103 NC_012912.1 3536602 3537708 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(3536602..3537708) Dickeya zeae Ech1591 8117801 YP_003005405.1 CDS Dd1591_3104 NC_012912.1 3537929 3538903 R TIGRFAM: phosphate binding protein; KEGG: eca:ECA1112 putative phosphate binding protein; phosphate binding protein complement(3537929..3538903) Dickeya zeae Ech1591 8117802 YP_003005406.1 CDS phoR NC_012912.1 3538984 3540306 R membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein complement(3538984..3540306) Dickeya zeae Ech1591 8117803 YP_003005407.1 CDS Dd1591_3106 NC_012912.1 3540333 3541022 R KEGG: eca:ECA1110 phosphate regulon response regulator; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; two component transcriptional regulator PhoB, winged helix family complement(3540333..3541022) Dickeya zeae Ech1591 8117804 YP_003005408.1 CDS Dd1591_3107 NC_012912.1 3541361 3542593 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: spe:Spro_1040 exonuclease subunit SbcD; nuclease SbcCD, subunit D 3541361..3542593 Dickeya zeae Ech1591 8117805 YP_003005409.1 CDS Dd1591_3108 NC_012912.1 3542590 3546273 D PFAM: SMC domain protein; KEGG: eca:ECA1108 exonuclease; SMC domain-containing protein 3542590..3546273 Dickeya zeae Ech1591 8117806 YP_003005410.1 CDS Dd1591_3109 NC_012912.1 3546309 3547220 R PFAM: ROK family protein; KEGG: eca:ECA1107 fructokinase; ROK family protein complement(3546309..3547220) Dickeya zeae Ech1591 8117807 YP_003005411.1 CDS Dd1591_3110 NC_012912.1 3547391 3548302 D PFAM: putative exonuclease RdgC; KEGG: spe:Spro_1027 recombination associated protein; putative exonuclease RdgC 3547391..3548302 Dickeya zeae Ech1591 8117808 YP_003005412.1 CDS Dd1591_3111 NC_012912.1 3548348 3550138 R PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA1105 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3548348..3550138) Dickeya zeae Ech1591 8117809 YP_003005413.1 CDS Dd1591_3112 NC_012912.1 3550608 3550892 R PFAM: protein of unknown function DUF1255; KEGG: eca:ECA1104 hypothetical protein; hypothetical protein complement(3550608..3550892) Dickeya zeae Ech1591 8117810 YP_003005414.1 CDS aroL NC_012912.1 3550929 3551450 R type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase II complement(3550929..3551450) Dickeya zeae Ech1591 8117811 YP_003005415.1 CDS Dd1591_3114 NC_012912.1 3551767 3552813 R KEGG: eca:ECA1102 L-asparaginase precursor; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; L-asparaginase, type II complement(3551767..3552813) Dickeya zeae Ech1591 8117812 YP_003005416.1 CDS Dd1591_3115 NC_012912.1 3553088 3554188 R PFAM: Methionine synthase vitamin-B12 independent; KEGG: bbt:BBta_5702 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Methionine synthase vitamin-B12 independent complement(3553088..3554188) Dickeya zeae Ech1591 8117813 YP_003005417.1 CDS Dd1591_3116 NC_012912.1 3554598 3555785 D KEGG: eca:ECA1090 putative lipoprotein; putative lipoprotein 3554598..3555785 Dickeya zeae Ech1591 8117814 YP_003005418.1 CDS Dd1591_3117 NC_012912.1 3555914 3556570 D TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: spe:Spro_1624 HAD family hydrolase; HAD-superfamily hydrolase 3555914..3556570 Dickeya zeae Ech1591 8117815 YP_003005419.1 CDS Dd1591_3118 NC_012912.1 3556586 3557527 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA2075 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3556586..3557527) Dickeya zeae Ech1591 8117816 YP_003005420.1 CDS Dd1591_3119 NC_012912.1 3557691 3559118 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: eca:ECA2074 hypothetical protein; hypothetical protein 3557691..3559118 Dickeya zeae Ech1591 8117817 YP_003005421.1 CDS Dd1591_3120 NC_012912.1 3559127 3560401 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: bur:Bcep18194_A4727 major facilitator transporter; major facilitator superfamily protein 3559127..3560401 Dickeya zeae Ech1591 8117818 YP_003005422.1 CDS Dd1591_3121 NC_012912.1 3560501 3561700 R PFAM: major facilitator superfamily MFS_1; KEGG: spq:SPAB_05417 hypothetical protein; major facilitator superfamily protein complement(3560501..3561700) Dickeya zeae Ech1591 8117819 YP_003005423.1 CDS Dd1591_3122 NC_012912.1 3561678 3562208 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0956 putative acetyltransferase; Phosphinothricin acetyltransferase complement(3561678..3562208) Dickeya zeae Ech1591 8117820 YP_003005424.1 CDS Dd1591_3123 NC_012912.1 3562366 3563247 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_3436 transcriptional regulator, LysR family; LysR family transcriptional regulator 3562366..3563247 Dickeya zeae Ech1591 8117821 YP_003005425.1 CDS Dd1591_3124 NC_012912.1 3563328 3563906 R KEGG: eca:ECA3090 hypothetical protein; hypothetical protein complement(3563328..3563906) Dickeya zeae Ech1591 8117822 YP_003005426.1 CDS Dd1591_3125 NC_012912.1 3564347 3565582 D PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: eca:ECA1089 hypothetical protein; protein serine/threonine phosphatase 3564347..3565582 Dickeya zeae Ech1591 8117823 YP_003005427.1 CDS Dd1591_3126 NC_012912.1 3565610 3566161 D KEGG: eca:ECA1088 hypothetical protein; hypothetical protein 3565610..3566161 Dickeya zeae Ech1591 8117824 YP_003005428.1 CDS Dd1591_3127 NC_012912.1 3566164 3566598 D KEGG: eca:ECA1087 putative lipoprotein; putative lipoprotein 3566164..3566598 Dickeya zeae Ech1591 8117825 YP_003005429.1 CDS Dd1591_3128 NC_012912.1 3566603 3567328 D KEGG: eca:ECA1086 putative signaling protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 3566603..3567328 Dickeya zeae Ech1591 8117826 YP_003005430.1 CDS Dd1591_3129 NC_012912.1 3567390 3567731 R TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: eca:ECA1082 phosphonoacetate hydrolase; alkylphosphonate utilization operon protein PhnA complement(3567390..3567731) Dickeya zeae Ech1591 8120994 YP_003005431.1 CDS Dd1591_3130 NC_012912.1 3568046 3569266 D PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: mmw:Mmwyl1_3284 major facilitator transporter; major facilitator superfamily protein 3568046..3569266 Dickeya zeae Ech1591 8120995 YP_003005432.1 CDS Dd1591_3131 NC_012912.1 3569344 3571107 R PFAM: Pyoverdine biosynthesis protein; Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0964 clavaminate synthase-like; PvcA-like domain; Pyoverdine biosynthesis protein complement(3569344..3571107) Dickeya zeae Ech1591 8120996 YP_003005433.1 CDS Dd1591_3132 NC_012912.1 3571439 3572119 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0963 hydrolase; predicted phosphatase; HAD-superfamily hydrolase complement(3571439..3572119) Dickeya zeae Ech1591 8120997 YP_003005434.1 CDS Dd1591_3133 NC_012912.1 3572176 3573183 R PFAM: Pyoverdine biosynthesis protein; KEGG: pen:PSEEN0962 siderophore biosynthesis protein PvcA-like; Pyoverdine biosynthesis protein complement(3572176..3573183) Dickeya zeae Ech1591 8120998 YP_003005435.1 CDS Dd1591_3134 NC_012912.1 3574539 3575159 R PFAM: PEBP family protein; KEGG: rfr:Rfer_3962 YbcL; PEBP family protein complement(3574539..3575159) Dickeya zeae Ech1591 8120999 YP_003005436.1 CDS Dd1591_3135 NC_012912.1 3575301 3576149 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: spe:Spro_2944 AraC family transcriptional regulator; AraC family transcriptional regulator 3575301..3576149 Dickeya zeae Ech1591 8121000 YP_003005437.1 CDS Dd1591_3136 NC_012912.1 3576268 3577158 D PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: eca:ECA1579 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase 3576268..3577158 Dickeya zeae Ech1591 8121001 YP_003005438.1 CDS Dd1591_3137 NC_012912.1 3577164 3577757 R PFAM: regulatory protein TetR; KEGG: mno:Mnod_7468 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3577164..3577757) Dickeya zeae Ech1591 8121002 YP_003005439.1 CDS Dd1591_3138 NC_012912.1 3577903 3578643 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mno:Mnod_7469 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3577903..3578643 Dickeya zeae Ech1591 8121003 YP_003005440.1 CDS Dd1591_3139 NC_012912.1 3578937 3579488 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pst:PSPTO_0818 MarR family transcriptional regulator; MarR family transcriptional regulator 3578937..3579488 Dickeya zeae Ech1591 8121004 YP_003005441.1 CDS Dd1591_3140 NC_012912.1 3579519 3580253 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: smd:Smed_5816 NADP oxidoreductase coenzyme F420-dependent; NADP oxidoreductase coenzyme F420-dependent 3579519..3580253 Dickeya zeae Ech1591 8121005 YP_003005442.1 CDS Dd1591_3141 NC_012912.1 3580287 3581000 D PFAM: nitroreductase; KEGG: pla:Plav_2473 nitroreductase; nitroreductase 3580287..3581000 Dickeya zeae Ech1591 8121006 YP_003005443.1 CDS Dd1591_3142 NC_012912.1 3581492 3584050 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3581492..3584050 Dickeya zeae Ech1591 8121007 YP_003005444.1 CDS Dd1591_3143 NC_012912.1 3584113 3584724 R KEGG: eca:ECA1052 lipoprotein involved with copper homeostasis and adhesion; hypothetical protein complement(3584113..3584724) Dickeya zeae Ech1591 8121008 YP_003005445.1 CDS Dd1591_3144 NC_012912.1 3584770 3585318 R PFAM: YaeQ family protein; KEGG: yen:YE3261 hypothetical protein; YaeQ family protein complement(3584770..3585318) Dickeya zeae Ech1591 8121009 YP_003005446.1 CDS Dd1591_3145 NC_012912.1 3585557 3585757 D PFAM: protein of unknown function UPF0253; KEGG: spe:Spro_3762 hypothetical protein; hypothetical protein 3585557..3585757 Dickeya zeae Ech1591 8121010 YP_003005447.1 CDS Dd1591_3146 NC_012912.1 3585744 3586004 D Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator 3585744..3586004 Dickeya zeae Ech1591 8121011 YP_003005448.1 CDS tilS NC_012912.1 3586060 3587388 R Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase complement(3586060..3587388) Dickeya zeae Ech1591 8121012 YP_003005449.1 CDS Dd1591_3148 NC_012912.1 3587378 3587767 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eca:ECA1048 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(3587378..3587767) Dickeya zeae Ech1591 8121013 YP_003005450.1 CDS Dd1591_3149 NC_012912.1 3587952 3588911 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(3587952..3588911) Dickeya zeae Ech1591 8121014 YP_003005451.1 CDS dnaE NC_012912.1 3588924 3592406 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3588924..3592406) Dickeya zeae Ech1591 8121015 YP_003005452.1 CDS rnhB NC_012912.1 3592484 3593080 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3592484..3593080) Dickeya zeae Ech1591 8121016 YP_003005453.1 CDS lpxB NC_012912.1 3593073 3594224 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3593073..3594224) Dickeya zeae Ech1591 8121017 YP_003005454.1 CDS Dd1591_3153 NC_012912.1 3594228 3595016 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3594228..3595016) Dickeya zeae Ech1591 8121018 YP_003005455.1 CDS fabZ NC_012912.1 3595020 3595475 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3595020..3595475) Dickeya zeae Ech1591 8121019 YP_003005456.1 CDS lpxD NC_012912.1 3595626 3596648 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3595626..3596648) Dickeya zeae Ech1591 8121020 YP_003005457.1 CDS Dd1591_3156 NC_012912.1 3596652 3597149 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: eca:ECA1040 periplasmic chaperone; periplasmic chaperone complement(3596652..3597149) Dickeya zeae Ech1591 8121021 YP_003005458.1 CDS Dd1591_3157 NC_012912.1 3597286 3599703 R part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT complement(3597286..3599703) Dickeya zeae Ech1591 8121022 YP_003005459.1 CDS Dd1591_3158 NC_012912.1 3599738 3601093 R catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP complement(3599738..3601093) Dickeya zeae Ech1591 8121023 YP_003005460.1 CDS Dd1591_3159 NC_012912.1 3601115 3601972 R PFAM: phosphatidate cytidylyltransferase; KEGG: eca:ECA1037 CDP-diglyceride synthase; Phosphatidate cytidylyltransferase complement(3601115..3601972) Dickeya zeae Ech1591 8121024 YP_003005461.1 CDS Dd1591_3160 NC_012912.1 3601982 3602743 R TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: eca:ECA1036 undecaprenyl pyrophosphate synthetase; UDP diphosphate synthase complement(3601982..3602743) Dickeya zeae Ech1591 8121025 YP_003005462.1 CDS Dd1591_3161 NC_012912.1 3602925 3604118 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3602925..3604118) Dickeya zeae Ech1591 8121026 YP_003005463.1 CDS frr NC_012912.1 3604322 3604879 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3604322..3604879) Dickeya zeae Ech1591 8121027 YP_003005464.1 CDS pyrH NC_012912.1 3605222 3605953 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3605222..3605953) Dickeya zeae Ech1591 8121028 YP_003005465.1 CDS tsf NC_012912.1 3606126 3606983 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3606126..3606983) Dickeya zeae Ech1591 8121029 YP_003005466.1 CDS rpsB NC_012912.1 3607109 3607834 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3607109..3607834) Dickeya zeae Ech1591 8121030 YP_003005467.1 CDS Dd1591_3166 NC_012912.1 3608202 3608996 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: eta:ETA_08880 methionine aminopeptidase; methionine aminopeptidase, type I 3608202..3608996 Dickeya zeae Ech1591 8121031 YP_003005468.1 CDS Dd1591_3167 NC_012912.1 3609046 3611727 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3609046..3611727 Dickeya zeae Ech1591 8121032 YP_003005469.1 CDS dapD NC_012912.1 3611800 3612624 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3611800..3612624 Dickeya zeae Ech1591 8121033 YP_003005470.1 CDS Dd1591_3169 NC_012912.1 3612748 3613134 D KEGG: yen:YE3288 hypothetical protein; hypothetical protein 3612748..3613134 Dickeya zeae Ech1591 8121034 YP_003005471.1 CDS Dd1591_3170 NC_012912.1 3613371 3613823 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3613371..3613823) Dickeya zeae Ech1591 8121035 YP_003005472.1 CDS Dd1591_3171 NC_012912.1 3613842 3614624 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3613842..3614624) Dickeya zeae Ech1591 8121036 YP_003005473.1 CDS Dd1591_3172 NC_012912.1 3614627 3614947 R PFAM: protein of unknown function DUF446; KEGG: eca:ECA1024 hypothetical protein; hypothetical protein complement(3614627..3614947) Dickeya zeae Ech1591 8121037 YP_003005474.1 CDS Dd1591_3173 NC_012912.1 3615658 3616206 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3615658..3616206) Dickeya zeae Ech1591 8121038 YP_003005475.1 CDS Dd1591_3174 NC_012912.1 3616492 3617856 D PFAM: conserved hypothetical protein; KEGG: eca:ECA1019 lysine decarboxylase family protein; hypothetical protein 3616492..3617856 Dickeya zeae Ech1591 8121039 YP_003005476.1 CDS Dd1591_3175 NC_012912.1 3617913 3618674 D PFAM: 5'-3' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: eca:ECA1018 exonuclease IX; 5'-3' exonuclease 3617913..3618674 Dickeya zeae Ech1591 8121040 YP_003005477.1 CDS Dd1591_3176 NC_012912.1 3618747 3619847 R KEGG: eca:ECA1017 putative RNA 2'-O-ribose methyltransferase; putative RNA 2'-O-ribose methyltransferase complement(3618747..3619847) Dickeya zeae Ech1591 8121041 YP_003005478.1 CDS Dd1591_3177 NC_012912.1 3619849 3620235 R PFAM: protein of unknown function DUF423; KEGG: eca:ECA1016 hypothetical protein; hypothetical protein complement(3619849..3620235) Dickeya zeae Ech1591 8121042 YP_003005479.1 CDS Dd1591_3178 NC_012912.1 3620318 3621244 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3620318..3621244) Dickeya zeae Ech1591 8121043 YP_003005480.1 CDS Dd1591_3179 NC_012912.1 3621598 3621819 R PFAM: protein of unknown function DUF903; KEGG: eca:ECA1013 putative lipoprotein; hypothetical protein complement(3621598..3621819) Dickeya zeae Ech1591 8121044 YP_003005481.1 CDS Dd1591_3180 NC_012912.1 3621991 3623196 D PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: eca:ECA1012 cysteine sulfinate desulfinase; cysteine sulfinate desulfinase 3621991..3623196 Dickeya zeae Ech1591 8121045 YP_003005482.1 CDS Dd1591_3181 NC_012912.1 3623199 3623642 D TIGRFAM: cysteine desulfurase, sulfur acceptor subunit CsdE; PFAM: Fe-S metabolism associated SufE; KEGG: eca:ECA1011 putative Fe-S metabolism associated protein; cysteine desulfurase, sulfur acceptor subunit CsdE 3623199..3623642 Dickeya zeae Ech1591 8121046 YP_003005483.1 CDS Dd1591_3182 NC_012912.1 3623630 3624463 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: eca:ECA1010 hypothetical protein; UBA/THIF-type NAD/FAD binding protein complement(3623630..3624463) Dickeya zeae Ech1591 8121047 YP_003005484.1 CDS Dd1591_3183 NC_012912.1 3624795 3625241 D PFAM: GCN5-related N-acetyltransferase; KEGG: swd:Swoo_4463 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 3624795..3625241 Dickeya zeae Ech1591 8121048 YP_003005485.1 CDS Dd1591_3184 NC_012912.1 3625260 3626273 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: asa:ASA_0954 D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 3625260..3626273 Dickeya zeae Ech1591 8121049 YP_003005486.1 CDS Dd1591_3185 NC_012912.1 3626273 3626752 D PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_0582 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 3626273..3626752 Dickeya zeae Ech1591 8121050 YP_003005487.1 CDS Dd1591_3186 NC_012912.1 3626805 3627317 D PFAM: GCN5-related N-acetyltransferase; KEGG: sbp:Sbal223_1772 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 3626805..3627317 Dickeya zeae Ech1591 8121051 YP_003005488.1 CDS mltA NC_012912.1 3627374 3628537 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A complement(3627374..3628537) Dickeya zeae Ech1591 8121052 YP_003005489.1 CDS Dd1591_3188 NC_012912.1 3629005 3630243 R KEGG: eca:ECA1000 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase complement(3629005..3630243) Dickeya zeae Ech1591 8121055 YP_003005490.1 CDS Dd1591_3189 NC_012912.1 3630468 3631793 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3630468..3631793 Dickeya zeae Ech1591 8121056 YP_003005491.1 CDS Dd1591_3190 NC_012912.1 3631936 3634839 R PFAM: peptidase M16 domain protein; KEGG: eca:ECA0994 protease III precursor; Pitrilysin complement(3631936..3634839) Dickeya zeae Ech1591 8121057 YP_003005492.1 CDS Dd1591_3191 NC_012912.1 3634879 3635265 R KEGG: eca:ECA0992 putative prepilin peptidase dependent protein c precursor; hypothetical protein complement(3634879..3635265) Dickeya zeae Ech1591 8121058 YP_003005493.1 CDS Dd1591_3192 NC_012912.1 3635249 3635695 R KEGG: eca:ECA0991 hypothetical protein; hypothetical protein complement(3635249..3635695) Dickeya zeae Ech1591 8121059 YP_003005494.1 CDS Dd1591_3193 NC_012912.1 3635685 3636287 R KEGG: eca:ECA0990 hypothetical protein; hypothetical protein complement(3635685..3636287) Dickeya zeae Ech1591 8121060 YP_003005495.1 CDS Dd1591_3194 NC_012912.1 3636281 3636772 R KEGG: eca:ECA0989 hypothetical protein; hypothetical protein complement(3636281..3636772) Dickeya zeae Ech1591 8121061 YP_003005496.1 CDS Dd1591_3195 NC_012912.1 3637014 3637808 R KEGG: eca:ECA0988 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase complement(3637014..3637808) Dickeya zeae Ech1591 8121062 YP_003005497.1 CDS Dd1591_3196 NC_012912.1 3637840 3638703 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3637840..3638703) Dickeya zeae Ech1591 8121063 YP_003005498.1 CDS Dd1591_3197 NC_012912.1 3638897 3641146 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain complement(3638897..3641146) Dickeya zeae Ech1591 8121064 YP_003005499.1 CDS Dd1591_3198 NC_012912.1 3641158 3641685 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3641158..3641685) Dickeya zeae Ech1591 8121065 YP_003005500.1 CDS Dd1591_3199 NC_012912.1 3642457 3643143 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3642457..3643143 Dickeya zeae Ech1591 8121066 YP_003005501.1 CDS Dd1591_3200 NC_012912.1 3643306 3644022 D PFAM: Integral membrane protein TerC; KEGG: eca:ECA0983 hypothetical protein; Integral membrane protein TerC 3643306..3644022 Dickeya zeae Ech1591 8121067 YP_003005502.1 CDS Dd1591_3201 NC_012912.1 3644176 3644394 D PFAM: protein of unknown function DUF903; KEGG: eca:ECA0982 putative lipoprotein; hypothetical protein 3644176..3644394 Dickeya zeae Ech1591 8121068 YP_003005503.1 CDS tas NC_012912.1 3644606 3645646 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; putative aldo-keto reductase 3644606..3645646 Dickeya zeae Ech1591 8121069 YP_003005504.1 CDS Dd1591_3203 NC_012912.1 3645710 3646423 R KEGG: eca:ECA0979 hypothetical protein; hypothetical protein complement(3645710..3646423) Dickeya zeae Ech1591 8121070 YP_003005505.1 CDS Dd1591_3204 NC_012912.1 3646533 3646877 R PFAM: protein of unknown function DUF469; KEGG: spe:Spro_4041 hypothetical protein; hypothetical protein complement(3646533..3646877) Dickeya zeae Ech1591 8121071 YP_003005506.1 CDS Dd1591_3205 NC_012912.1 3646877 3647596 R KEGG: eca:ECA0977 tRNA (guanine-N(7))-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(3646877..3647596) Dickeya zeae Ech1591 8121072 YP_003005507.1 CDS Dd1591_3206 NC_012912.1 3647756 3648841 D KEGG: eca:ECA0976 adenine DNA glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; adenine DNA glycosylase 3647756..3648841 Dickeya zeae Ech1591 8121073 YP_003005508.1 CDS Dd1591_3207 NC_012912.1 3648844 3649116 D PFAM: Fe(II) trafficking protein YggX; KEGG: esa:ESA_00329 hypothetical protein; Fe(II) trafficking protein YggX 3648844..3649116 Dickeya zeae Ech1591 8120834 YP_003005509.1 CDS mltC NC_012912.1 3649171 3650253 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3649171..3650253 Dickeya zeae Ech1591 8120835 YP_003005510.1 CDS Dd1591_3209 NC_012912.1 3650694 3652151 D PFAM: amino acid permease-associated region; KEGG: yps:YPTB1935 APC family L-asparagine permease; amino acid permease-like protein 3650694..3652151 Dickeya zeae Ech1591 8120836 YP_003005511.1 CDS Dd1591_3210 NC_012912.1 3652227 3654380 R PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: eca:ECA0967 ornithine decarboxylase; ornithine decarboxylase complement(3652227..3654380) Dickeya zeae Ech1591 8120837 YP_003005512.1 CDS Dd1591_3211 NC_012912.1 3654651 3654776 R hypothetical protein complement(3654651..3654776) Dickeya zeae Ech1591 8120838 YP_003005513.1 CDS Dd1591_3212 NC_012912.1 3655722 3656336 D PFAM: protein of unknown function DUF1440; KEGG: eum:ECUMN_0321 conserved hypothetical protein; putative inner membrane protein; hypothetical protein 3655722..3656336 Dickeya zeae Ech1591 8120840 YP_003005514.1 CDS Dd1591_3213 NC_012912.1 3656388 3657231 D KEGG: ssn:SSON_P063 ISSfl1 ORF1; transposase and inactivated derivatives-like protein join(3656388..3656738,3656737..3657231) Dickeya zeae Ech1591 8120841 YP_003005515.1 CDS Dd1591_3214 NC_012912.1 3657589 3657753 D hypothetical protein 3657589..3657753 Dickeya zeae Ech1591 8120842 YP_003005516.1 CDS Dd1591_3216 NC_012912.1 3658336 3659010 R PFAM: Helix-turn-helix type 11 domain protein; KEGG: rle:RL2360 hypothetical protein; Helix-turn-helix type 11 domain-containing protein complement(3658336..3659010) Dickeya zeae Ech1591 8120844 YP_003005517.1 CDS Dd1591_3218 NC_012912.1 3659188 3659565 R KEGG: afw:Anae109_4407 hypothetical protein; hypothetical protein complement(3659188..3659565) Dickeya zeae Ech1591 8120846 YP_003005518.1 CDS Dd1591_3219 NC_012912.1 3659682 3660209 D KEGG: mlo:mlr5488 hypothetical protein; hypothetical protein 3659682..3660209 Dickeya zeae Ech1591 8120847 YP_003005519.1 CDS Dd1591_3220 NC_012912.1 3660331 3660726 R PFAM: helix-turn-helix HxlR type; KEGG: ccs:CCNA_03479 transcriptional regulator, MarR family; HxlR family transcriptional regulator complement(3660331..3660726) Dickeya zeae Ech1591 8120848 YP_003005520.1 CDS Dd1591_3221 NC_012912.1 3661419 3662666 D KEGG: eca:ECA0549 putative plasmid transfer protein; putative plasmid transfer protein 3661419..3662666 Dickeya zeae Ech1591 8120849 YP_003005521.1 CDS Dd1591_3222 NC_012912.1 3662716 3665778 R PFAM: acriflavin resistance protein; KEGG: esa:ESA_pESA3p05444 hypothetical protein; acriflavin resistance protein complement(3662716..3665778) Dickeya zeae Ech1591 8120850 YP_003005522.1 CDS Dd1591_3223 NC_012912.1 3665778 3666923 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bbt:BBta_0809 hypothetical protein; RND family efflux transporter MFP subunit complement(3665778..3666923) Dickeya zeae Ech1591 8120851 YP_003005523.1 CDS Dd1591_3224 NC_012912.1 3667047 3668216 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: esa:ESA_pESA3p05442 hypothetical protein; histidine kinase complement(3667047..3668216) Dickeya zeae Ech1591 8120852 YP_003005524.1 CDS Dd1591_3225 NC_012912.1 3668213 3668908 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: kpe:KPK_2665 DNA-binding response regulator; winged helix family two component transcriptional regulator complement(3668213..3668908) Dickeya zeae Ech1591 8120853 YP_003005525.1 CDS Dd1591_3226 NC_012912.1 3669050 3669835 D PFAM: MltA-interacting MipA family protein; KEGG: esa:ESA_pESA3p05440 hypothetical protein; MltA-interacting MipA family protein 3669050..3669835 Dickeya zeae Ech1591 8120854 YP_003005526.1 CDS Dd1591_3227 NC_012912.1 3670299 3671408 D PFAM: Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: spe:Spro_3212 hypothetical protein; Male sterility domain-containing protein 3670299..3671408 Dickeya zeae Ech1591 8120855 YP_003005527.1 CDS Dd1591_3228 NC_012912.1 3671528 3672355 R KEGG: aha:AHA_3054 hypothetical protein; hypothetical protein complement(3671528..3672355) Dickeya zeae Ech1591 8120856 YP_003005528.1 CDS Dd1591_3229 NC_012912.1 3672870 3675131 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eca:ECA1009 biotin sulfoxide reductase; molybdopterin oxidoreductase 3672870..3675131 Dickeya zeae Ech1591 8120857 YP_003005529.1 CDS Dd1591_3230 NC_012912.1 3675206 3675739 R PFAM: conserved hypothetical protein; KEGG: ecc:c3738 hypothetical protein; hypothetical protein complement(3675206..3675739) Dickeya zeae Ech1591 8120858 YP_003005530.1 CDS Dd1591_3231 NC_012912.1 3676087 3677829 D PFAM: Rhamnogalacturonate lyase; KEGG: eca:ECA0804 rhamnogalacturonate lyase; Rhamnogalacturonate lyase 3676087..3677829 Dickeya zeae Ech1591 8120859 YP_003005531.1 CDS Dd1591_3232 NC_012912.1 3677957 3678703 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: plu:plu0977 hypothetical protein; short-chain dehydrogenase/reductase SDR 3677957..3678703 Dickeya zeae Ech1591 8120860 YP_003005532.1 CDS Dd1591_3233 NC_012912.1 3679206 3679820 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu1490 hypothetical protein; XRE family transcriptional regulator 3679206..3679820 Dickeya zeae Ech1591 8120861 YP_003005533.1 CDS Dd1591_3234 NC_012912.1 3679821 3680690 D TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: spe:Spro_4196 hypothetical protein; hypothetical protein 3679821..3680690 Dickeya zeae Ech1591 8120862 YP_003005534.1 CDS queF NC_012912.1 3680696 3681538 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3680696..3681538 Dickeya zeae Ech1591 8120863 YP_003005535.1 CDS Dd1591_3236 NC_012912.1 3681532 3682467 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azo:azo1247 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3681532..3682467) Dickeya zeae Ech1591 8120864 YP_003005536.1 CDS Dd1591_3237 NC_012912.1 3682588 3683673 D KEGG: reh:H16_A0477 3-isopropylmalate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 3682588..3683673 Dickeya zeae Ech1591 8120865 YP_003005537.1 CDS Dd1591_3238 NC_012912.1 3683789 3684298 R KEGG: eca:ECA3786 hypothetical protein; hypothetical protein complement(3683789..3684298) Dickeya zeae Ech1591 8120866 YP_003005538.1 CDS Dd1591_3239 NC_012912.1 3685637 3686830 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: eca:ECA0930 permease; major facilitator superfamily protein 3685637..3686830 Dickeya zeae Ech1591 8120867 YP_003005539.1 CDS Dd1591_3240 NC_012912.1 3686974 3688269 D PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_03296 ABC-type sugar transport system, periplasmic component; extracellular solute-binding protein family 1 3686974..3688269 Dickeya zeae Ech1591 8120868 YP_003005540.1 CDS Dd1591_3241 NC_012912.1 3688328 3689200 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_03297 ABC-type sugar transport system, permease components; binding-protein-dependent transport systems inner membrane component 3688328..3689200 Dickeya zeae Ech1591 8120869 YP_003005541.1 CDS Dd1591_3242 NC_012912.1 3689197 3690024 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_03298 ABC-type sugar transport system, permease component; binding-protein-dependent transport systems inner membrane component 3689197..3690024 Dickeya zeae Ech1591 8120870 YP_003005542.1 CDS Dd1591_3243 NC_012912.1 3690034 3691140 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rle:RL0095 putative ATP-binding component of ABC transporter protein; ABC transporter 3690034..3691140 Dickeya zeae Ech1591 8120871 YP_003005543.1 CDS Dd1591_3244 NC_012912.1 3691130 3691897 D KEGG: hch:HCH_04196 beta-lactamase superfamily hydrolase; beta-lactamase superfamily hydrolase 3691130..3691897 Dickeya zeae Ech1591 8120872 YP_003005544.1 CDS Dd1591_3245 NC_012912.1 3691890 3692876 D PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: hch:HCH_03302 transcriptional regulator; LacI family transcriptional regulator 3691890..3692876 Dickeya zeae Ech1591 8120873 YP_003005545.1 CDS Dd1591_3246 NC_012912.1 3692936 3693838 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0916 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3692936..3693838) Dickeya zeae Ech1591 8120874 YP_003005546.1 CDS Dd1591_3247 NC_012912.1 3694030 3695004 D PFAM: Alpha/beta hydrolase fold-3 domain protein; peptidase S15; KEGG: eca:ECA0915 hypothetical protein; alpha/beta hydrolase fold-3 domain-containing protein 3694030..3695004 Dickeya zeae Ech1591 8120875 YP_003005547.1 CDS Dd1591_3248 NC_012912.1 3695672 3696370 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA0914 putative component of polysulfide reductase; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3695672..3696370 Dickeya zeae Ech1591 8120876 YP_003005548.1 CDS Dd1591_3249 NC_012912.1 3696363 3697319 D TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; KEGG: eca:ECA0913 putative component of polysulfide reductase; cytochrome c nitrite reductase subunit NrfD 3696363..3697319 Dickeya zeae Ech1591 8120877 YP_003005549.1 CDS Dd1591_3250 NC_012912.1 3697322 3698695 D PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA0912 hypothetical protein; major facilitator superfamily protein 3697322..3698695 Dickeya zeae Ech1591 8120878 YP_003005550.1 CDS Dd1591_3251 NC_012912.1 3698752 3699096 D PFAM: FMN-binding domain protein; KEGG: eca:ECA0911 hypothetical protein; FMN-binding domain-containing protein 3698752..3699096 Dickeya zeae Ech1591 8120879 YP_003005551.1 CDS Dd1591_3252 NC_012912.1 3699159 3700730 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3699159..3700730 Dickeya zeae Ech1591 8120880 YP_003005552.1 CDS Dd1591_3253 NC_012912.1 3700794 3701447 R PFAM: 2OG-Fe(II) oxygenase; KEGG: eca:ECA0909 alkylated DNA repair protein; 2OG-Fe(II) oxygenase complement(3700794..3701447) Dickeya zeae Ech1591 8120881 YP_003005553.1 CDS Dd1591_3254 NC_012912.1 3701803 3702792 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sea:SeAg_B4544 invertase; transposase IS116/IS110/IS902 family protein complement(3701803..3702792) Dickeya zeae Ech1591 8120882 YP_003005554.1 CDS Dd1591_3255 NC_012912.1 3703149 3703823 D KEGG: eca:ECA0907 putative DNA-3-methyladenine glycosylase; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; DNA-3-methyladenine glycosylase II 3703149..3703823 Dickeya zeae Ech1591 8120883 YP_003005555.1 CDS Dd1591_3256 NC_012912.1 3703892 3704356 R PFAM: transmembrane pair domain protein; KEGG: eca:ECA0906 hypothetical protein; transmembrane pair domain-containing protein complement(3703892..3704356) Dickeya zeae Ech1591 8120884 YP_003005556.1 CDS Dd1591_3257 NC_012912.1 3704463 3705329 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0905 LysR family transcriptional regulator; LysR family transcriptional regulator 3704463..3705329 Dickeya zeae Ech1591 8120885 YP_003005557.1 CDS Dd1591_3258 NC_012912.1 3705759 3707402 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: eca:ECA0904 fumarate hydratase class I, aerobic; hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta 3705759..3707402 Dickeya zeae Ech1591 8120886 YP_003005558.1 CDS Dd1591_3259 NC_012912.1 3707449 3708975 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator complement(3707449..3708975) Dickeya zeae Ech1591 8120887 YP_003005559.1 CDS Dd1591_3260 NC_012912.1 3709138 3710622 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 3709138..3710622 Dickeya zeae Ech1591 8120888 YP_003005560.1 CDS Dd1591_3261 NC_012912.1 3710632 3711828 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 3710632..3711828 Dickeya zeae Ech1591 8120889 YP_003005561.1 CDS Dd1591_3262 NC_012912.1 3711949 3712812 D with TehA confers resistance to tellurite; tellurite resistance protein TehB 3711949..3712812 Dickeya zeae Ech1591 8120890 YP_003005562.1 CDS ribB NC_012912.1 3712917 3713570 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3712917..3713570) Dickeya zeae Ech1591 8120891 YP_003005563.1 CDS Dd1591_3264 NC_012912.1 3714020 3714304 D PFAM: protein of unknown function DUF526; KEGG: spe:Spro_4287 hypothetical protein; hypothetical protein 3714020..3714304 Dickeya zeae Ech1591 8120892 YP_003005564.1 CDS Dd1591_3265 NC_012912.1 3714360 3715613 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH complement(3714360..3715613) Dickeya zeae Ech1591 8120893 YP_003005565.1 CDS Dd1591_3266 NC_012912.1 3715776 3716702 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(3715776..3716702) Dickeya zeae Ech1591 8120894 YP_003005566.1 CDS Dd1591_3267 NC_012912.1 3716926 3717696 D PFAM: protein of unknown function DUF540; KEGG: eca:ECA0895 putative sulfate transport protein CysZ; hypothetical protein 3716926..3717696 Dickeya zeae Ech1591 8120895 YP_003005567.1 CDS Dd1591_3268 NC_012912.1 3717873 3718841 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 3717873..3718841 Dickeya zeae Ech1591 8120896 YP_003005568.1 CDS Dd1591_3269 NC_012912.1 3719247 3719504 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: eum:ECUMN_2737 phosphohistidinoprotein-hexose phosphotransferase component of PTS system (HPr); PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr 3719247..3719504 Dickeya zeae Ech1591 8120897 YP_003005569.1 CDS Dd1591_3270 NC_012912.1 3719552 3721279 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 3719552..3721279 Dickeya zeae Ech1591 8120898 YP_003005570.1 CDS Dd1591_3271 NC_012912.1 3721321 3721830 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 3721321..3721830 Dickeya zeae Ech1591 8120899 YP_003005571.1 CDS Dd1591_3272 NC_012912.1 3722098 3722658 R PFAM: helix-turn-helix HxlR type; KEGG: gbe:GbCGDNIH1_1161 transcriptional regulator, MarR family; HxlR family transcriptional regulator complement(3722098..3722658) Dickeya zeae Ech1591 8120900 YP_003005572.1 CDS Dd1591_3273 NC_012912.1 3723194 3724159 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2841 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 3723194..3724159 Dickeya zeae Ech1591 8120901 YP_003005573.1 CDS Dd1591_3274 NC_012912.1 3724263 3725660 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: spe:Spro_3451 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(3724263..3725660) Dickeya zeae Ech1591 8120902 YP_003005574.1 CDS Dd1591_3275 NC_012912.1 3725663 3726361 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: eca:ECA0889 two-component system response regulator; winged helix family two component transcriptional regulator complement(3725663..3726361) Dickeya zeae Ech1591 8120903 YP_003005575.1 CDS Dd1591_3277 NC_012912.1 3727013 3727894 R TIGRFAM: cysteine synthase B; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: eca:ECA0886 cysteine synthase B; cysteine synthase B complement(3727013..3727894) Dickeya zeae Ech1591 8120905 YP_003005576.1 CDS Dd1591_3278 NC_012912.1 3727983 3728882 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: eca:ECA0882 hypothetical protein; Dyp-type peroxidase family complement(3727983..3728882) Dickeya zeae Ech1591 8120906 YP_003005577.1 CDS Dd1591_3279 NC_012912.1 3729106 3730401 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: eca:ECA0932 permease; cytosine/purines uracil thiamine allantoin permease complement(3729106..3730401) Dickeya zeae Ech1591 8120907 YP_003005578.1 CDS Dd1591_3280 NC_012912.1 3730417 3731106 R PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: eca:ECA0933 LuxR family transcriptional regulator; LuxR family transcriptional regulator complement(3730417..3731106) Dickeya zeae Ech1591 8120908 YP_003005579.1 CDS Dd1591_3281 NC_012912.1 3731142 3731555 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0934 putative acetyltransferase; GCN5-related N-acetyltransferase complement(3731142..3731555) Dickeya zeae Ech1591 8120909 YP_003005580.1 CDS Dd1591_3282 NC_012912.1 3731930 3732217 D KEGG: eca:ECA0686 sugar fermentation stimulation protein; putative transcriptional regulator Nlp 3731930..3732217 Dickeya zeae Ech1591 8120910 YP_003005581.1 CDS Dd1591_3283 NC_012912.1 3732307 3733581 R TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; KEGG: eca:ECA3379 putative glycosyltransferase; glycosyltransferase, MGT family complement(3732307..3733581) Dickeya zeae Ech1591 8120911 YP_003005582.1 CDS Dd1591_3284 NC_012912.1 3734018 3734626 R PFAM: protein of unknown function DUF1131; KEGG: eca:ECA0881 hypothetical protein; hypothetical protein complement(3734018..3734626) Dickeya zeae Ech1591 8120912 YP_003005583.1 CDS Dd1591_3285 NC_012912.1 3734870 3736531 R PFAM: ABC transporter domain protein; ABC transporter related; SbmABacA family protein; SMART: AAA ATPase; KEGG: eca:ECA0880 putative ABC transporter ATP-binding protein; ABC transporter complement(3734870..3736531) Dickeya zeae Ech1591 8120913 YP_003005584.1 CDS Dd1591_3286 NC_012912.1 3736528 3739269 R PFAM: peptidase M16 domain protein; KEGG: eca:ECA0879 putative zinc protease; peptidase M16 domain-containing protein complement(3736528..3739269) Dickeya zeae Ech1591 8119021 YP_003005585.1 CDS Dd1591_3287 NC_012912.1 3739402 3741972 R PFAM: TonB-dependent receptor plug; KEGG: eca:ECA0878 hypothetical protein; TonB-dependent receptor plug complement(3739402..3741972) Dickeya zeae Ech1591 8119022 YP_003005586.1 CDS Dd1591_3288 NC_012912.1 3742032 3742616 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: eca:ECA0877 TonB-like protein; TonB family protein complement(3742032..3742616) Dickeya zeae Ech1591 8119023 YP_003005587.1 CDS Dd1591_3289 NC_012912.1 3743244 3743669 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0875 putative acetyltransferase; putative acetyltransferase complement(3743244..3743669) Dickeya zeae Ech1591 8119024 YP_003005588.1 CDS Dd1591_3290 NC_012912.1 3743869 3744807 D PFAM: coproporphyrinogen III oxidase; KEGG: eca:ECA0874 coproporphyrinogen III oxidase; Coproporphyrinogen oxidase 3743869..3744807 Dickeya zeae Ech1591 8119025 YP_003005589.1 CDS Dd1591_3291 NC_012912.1 3744804 3745256 D PFAM: protein of unknown function DUF188; KEGG: spe:Spro_3465 hypothetical protein; hypothetical protein 3744804..3745256 Dickeya zeae Ech1591 8119026 YP_003005590.1 CDS Dd1591_3292 NC_012912.1 3745323 3747602 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(3745323..3747602) Dickeya zeae Ech1591 8119027 YP_003005591.1 CDS Dd1591_3294 NC_012912.1 3748424 3749008 R PFAM: NUDIX hydrolase; KEGG: eca:ECA0847 putative MutT/NUDIX family protein; NUDIX hydrolase complement(3748424..3749008) Dickeya zeae Ech1591 8119029 YP_003005592.1 CDS Dd1591_3295 NC_012912.1 3749156 3750391 R TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: eca:ECA0843 manganese transport protein MntH; manganese transport protein MntH complement(3749156..3750391) Dickeya zeae Ech1591 8119030 YP_003005593.1 CDS Dd1591_3296 NC_012912.1 3750757 3751344 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3750757..3751344) Dickeya zeae Ech1591 8119031 YP_003005594.1 CDS Dd1591_3297 NC_012912.1 3751498 3752376 D PFAM: ATP-NAD/AcoX kinase; KEGG: eca:ECA0841 inorganic polyphosphate/ATP-NAD kinase; ATP-NAD/AcoX kinase 3751498..3752376 Dickeya zeae Ech1591 8119032 YP_003005595.1 CDS Dd1591_3298 NC_012912.1 3752460 3754121 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: eca:ECA0840 recombination and repair protein; recombination and repair protein 3752460..3754121 Dickeya zeae Ech1591 8119033 YP_003005596.1 CDS Dd1591_3299 NC_012912.1 3754233 3754577 D PFAM: SmpA/OmlA domain protein; KEGG: eca:ECA0839 hypothetical protein; hypothetical protein 3754233..3754577 Dickeya zeae Ech1591 8119034 YP_003005597.1 CDS Dd1591_3300 NC_012912.1 3754633 3754926 R PFAM: protein of unknown function UPF0125; KEGG: sgl:SG1802 hypothetical protein; hypothetical protein complement(3754633..3754926) Dickeya zeae Ech1591 8119035 YP_003005598.1 CDS Dd1591_3301 NC_012912.1 3754919 3755353 R PFAM: cyclase/dehydrase; KEGG: eca:ECA0837 hypothetical protein; cyclase/dehydrase complement(3754919..3755353) Dickeya zeae Ech1591 8119036 YP_003005599.1 CDS Dd1591_3302 NC_012912.1 3755509 3755991 D TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: cko:CKO_03942 hypothetical protein; SsrA-binding protein 3755509..3755991 Dickeya zeae Ech1591 8119037 YP_003005600.1 CDS Dd1591_3303 NC_012912.1 3757269 3758462 R PFAM: transposase IS4 family protein; KEGG: sfx:S4808 hypothetical protein; transposase IS4 family protein complement(3757269..3758462) Dickeya zeae Ech1591 8119039 YP_003005601.1 CDS Dd1591_3304 NC_012912.1 3759192 3759590 D hypothetical protein 3759192..3759590 Dickeya zeae Ech1591 8119040 YP_003005602.1 CDS Dd1591_3305 NC_012912.1 3759745 3760506 D KEGG: smd:Smed_1902 hypothetical protein; hypothetical protein 3759745..3760506 Dickeya zeae Ech1591 8119041 YP_003005603.1 CDS Dd1591_3306 NC_012912.1 3760659 3761576 R PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: eca:ECA1499 pectin lyase; pectate lyase/Amb allergen complement(3760659..3761576) Dickeya zeae Ech1591 8119042 YP_003005604.1 CDS Dd1591_3307 NC_012912.1 3761588 3762049 R KEGG: ilo:IL2017 type II secretory pathway, component PulM; hypothetical protein complement(3761588..3762049) Dickeya zeae Ech1591 8119043 YP_003005605.1 CDS Dd1591_3308 NC_012912.1 3762046 3763221 R KEGG: vvy:VV0222 type II secretory pathway, component EpsL; Type II secretory pathway component PulL-like protein complement(3762046..3763221) Dickeya zeae Ech1591 8119044 YP_003005606.1 CDS Dd1591_3309 NC_012912.1 3763211 3764122 R KEGG: spe:Spro_4244 general secretion pathway protein K; hypothetical protein complement(3763211..3764122) Dickeya zeae Ech1591 8119045 YP_003005607.1 CDS Dd1591_3310 NC_012912.1 3764119 3764664 R KEGG: ecf:ECH74115_B0009 general secretion pathway protein J; Type II secretory pathway component PulJ-like protein complement(3764119..3764664) Dickeya zeae Ech1591 8119046 YP_003005608.1 CDS Dd1591_3311 NC_012912.1 3764661 3765035 R PFAM: type II secretion system protein I/J; KEGG: hha:Hhal_2374 general secretion pathway protein I; type II secretion system protein I/J complement(3764661..3765035) Dickeya zeae Ech1591 8119047 YP_003005609.1 CDS Dd1591_3312 NC_012912.1 3765071 3765487 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: ilo:IL2023 type II secretory pathway, pseudopilin PulG; general secretion pathway protein G complement(3765071..3765487) Dickeya zeae Ech1591 8119048 YP_003005610.1 CDS Dd1591_3313 NC_012912.1 3765507 3766712 R PFAM: type II secretion system protein; KEGG: eca:ECA3107 general secretion pathway protein F; type II secretion system protein complement(3765507..3766712) Dickeya zeae Ech1591 8119049 YP_003005611.1 CDS Dd1591_3314 NC_012912.1 3766705 3768180 R PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: aha:AHA_0570 general secretory pathway protein E; type II secretion system protein E complement(3766705..3768180) Dickeya zeae Ech1591 8119050 YP_003005612.1 CDS Dd1591_3315 NC_012912.1 3768180 3770270 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: kpe:KPK_4576 pullulanase secretion envelope protein PulD; general secretion pathway protein D complement(3768180..3770270) Dickeya zeae Ech1591 8119051 YP_003005613.1 CDS Dd1591_3316 NC_012912.1 3770286 3770792 R KEGG: spe:Spro_4252 hypothetical protein; hypothetical protein complement(3770286..3770792) Dickeya zeae Ech1591 8119052 YP_003005614.1 CDS Dd1591_3317 NC_012912.1 3771600 3773009 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mxa:MXAN_6804 MATE efflux family protein; MATE efflux family protein complement(3771600..3773009) Dickeya zeae Ech1591 8119053 YP_003005615.1 CDS Dd1591_3318 NC_012912.1 3773042 3774520 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3443 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system, outer membrane lipoprotein, NodT family complement(3773042..3774520) Dickeya zeae Ech1591 8119054 YP_003005616.1 CDS Dd1591_3319 NC_012912.1 3774646 3775263 D PFAM: regulatory protein TetR; KEGG: pol:Bpro_3444 transcriptional regulator, TetR family; TetR family transcriptional regulator 3774646..3775263 Dickeya zeae Ech1591 8119055 YP_003005617.1 CDS Dd1591_3320 NC_012912.1 3775357 3776472 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3445 secretion protein HlyD; RND family efflux transporter MFP subunit 3775357..3776472 Dickeya zeae Ech1591 8119056 YP_003005618.1 CDS Dd1591_3321 NC_012912.1 3776469 3779534 D PFAM: acriflavin resistance protein; KEGG: xfa:XF2083 cation efflux system protein; acriflavin resistance protein 3776469..3779534 Dickeya zeae Ech1591 8119057 YP_003005619.1 CDS Dd1591_3322 NC_012912.1 3779578 3780384 D PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: bch:Bcen2424_6530 short chain dehydrogenase; short chain dehydrogenase 3779578..3780384 Dickeya zeae Ech1591 8119058 YP_003005620.1 CDS Dd1591_3323 NC_012912.1 3780427 3781713 D FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II 3780427..3781713 Dickeya zeae Ech1591 8119059 YP_003005621.1 CDS Dd1591_3324 NC_012912.1 3781814 3782635 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr1595 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3781814..3782635 Dickeya zeae Ech1591 8119060 YP_003005622.1 CDS Dd1591_3325 NC_012912.1 3782854 3783240 R PFAM: helix-turn-helix HxlR type; KEGG: rso:RSc0210 hypothetical protein; HxlR family transcriptional regulator complement(3782854..3783240) Dickeya zeae Ech1591 8119061 YP_003005623.1 CDS Dd1591_3326 NC_012912.1 3783322 3783729 D KEGG: rso:RSc0209 hypothetical protein; hypothetical protein 3783322..3783729 Dickeya zeae Ech1591 8119062 YP_003005624.1 CDS Dd1591_3327 NC_012912.1 3783786 3784421 D KEGG: ret:RHE_PC00048 hypothetical protein; hypothetical protein 3783786..3784421 Dickeya zeae Ech1591 8119063 YP_003005625.1 CDS Dd1591_3328 NC_012912.1 3784909 3785691 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA0828 putative amino acid-binding periplasmic protein; extracellular solute-binding protein family 3 3784909..3785691 Dickeya zeae Ech1591 8119064 YP_003005626.1 CDS Dd1591_3329 NC_012912.1 3786409 3787341 R KEGG: dar:Daro_3104 hypothetical protein; hypothetical protein complement(3786409..3787341) Dickeya zeae Ech1591 8119065 YP_003005627.1 CDS Dd1591_3330 NC_012912.1 3787560 3788705 D membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 3787560..3788705 Dickeya zeae Ech1591 8119066 YP_003005628.1 CDS Dd1591_3331 NC_012912.1 3789049 3790038 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sea:SeAg_B4544 invertase; transposase IS116/IS110/IS902 family protein 3789049..3790038 Dickeya zeae Ech1591 8119067 YP_003005629.1 CDS Dd1591_3332 NC_012912.1 3790308 3791135 R PFAM: Myo-inositol catabolism IolB domain protein; KEGG: eca:ECA1465 hypothetical protein; Myo-inositol catabolism IolB domain-containing protein complement(3790308..3791135) Dickeya zeae Ech1591 8119068 YP_003005630.1 CDS Dd1591_3333 NC_012912.1 3791158 3792048 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: eca:ECA1464 putative myo-inositol catabolism protein; Myo-inosose-2 dehydratase complement(3791158..3792048) Dickeya zeae Ech1591 8119069 YP_003005631.1 CDS Dd1591_3334 NC_012912.1 3792080 3794023 R PFAM: PfkB domain protein; KEGG: eca:ECA1463 putative carbohydrate kinase; PfkB domain-containing protein complement(3792080..3794023) Dickeya zeae Ech1591 8119070 YP_003005632.1 CDS Dd1591_3335 NC_012912.1 3794096 3795229 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA1462 oxidoreductase; oxidoreductase domain-containing protein complement(3794096..3795229) Dickeya zeae Ech1591 8119071 YP_003005633.1 CDS Dd1591_3336 NC_012912.1 3795247 3796287 R PFAM: inner-membrane translocator; KEGG: eca:ECA1461 putative sugar ABC transporter, permease protein; inner-membrane translocator complement(3795247..3796287) Dickeya zeae Ech1591 8119072 YP_003005634.1 CDS Dd1591_3337 NC_012912.1 3796298 3797863 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cko:CKO_03989 hypothetical protein; ABC transporter complement(3796298..3797863) Dickeya zeae Ech1591 8119073 YP_003005635.1 CDS Dd1591_3338 NC_012912.1 3797902 3798840 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: eca:ECA1459 putative sugar ABC transporter, periplasmic protein; periplasmic binding protein/LacI transcriptional regulator complement(3797902..3798840) Dickeya zeae Ech1591 8119074 YP_003005636.1 CDS Dd1591_3339 NC_012912.1 3798925 3799911 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA1458 putative myo-inositol 2-dehydrogenase; oxidoreductase domain-containing protein complement(3798925..3799911) Dickeya zeae Ech1591 8119075 YP_003005637.1 CDS Dd1591_3340 NC_012912.1 3800474 3801223 D SMART: AAA ATPase; KEGG: rme:Rmet_4896 SMC protein-like protein; AAA ATPase 3800474..3801223 Dickeya zeae Ech1591 8119076 YP_003005638.1 CDS Dd1591_3341 NC_012912.1 3801296 3801586 D hypothetical protein 3801296..3801586 Dickeya zeae Ech1591 8119077 YP_003005639.1 CDS Dd1591_3342 NC_012912.1 3801771 3803702 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cko:CKO_03993 hypothetical protein; thiamine pyrophosphate protein domain-containing protein TPP-binding complement(3801771..3803702) Dickeya zeae Ech1591 8119078 YP_003005640.1 CDS Dd1591_3343 NC_012912.1 3803730 3805241 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: eca:ECA1456 putative aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(3803730..3805241) Dickeya zeae Ech1591 8119079 YP_003005641.1 CDS Dd1591_3344 NC_012912.1 3805552 3806409 D PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: eca:ECA1455 putative transcriptional regulator; RpiR family transcriptional regulator 3805552..3806409 Dickeya zeae Ech1591 8119080 YP_003005642.1 CDS Dd1591_3345 NC_012912.1 3806757 3807857 D KEGG: yen:YE3211 D-alanine--D-alanine ligase A; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine/D-alanine ligase 3806757..3807857 Dickeya zeae Ech1591 8119081 YP_003005643.1 CDS Dd1591_3346 NC_012912.1 3807904 3808188 R PFAM: YCII-related; KEGG: yen:YE1740 hypothetical protein; YCII-like protein complement(3807904..3808188) Dickeya zeae Ech1591 8119082 YP_003005644.1 CDS Dd1591_3347 NC_012912.1 3808203 3808598 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bch:Bcen2424_4729 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(3808203..3808598) Dickeya zeae Ech1591 8119083 YP_003005645.1 CDS Dd1591_3348 NC_012912.1 3808735 3809223 D PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2951 acetyltransferase; GCN5-related N-acetyltransferase 3808735..3809223 Dickeya zeae Ech1591 8119084 YP_003005646.1 CDS Dd1591_3349 NC_012912.1 3809294 3809533 D PFAM: DinI family protein; KEGG: yen:YE1408 putative stress response protein; DinI family protein 3809294..3809533 Dickeya zeae Ech1591 8119085 YP_003005647.1 CDS Dd1591_3350 NC_012912.1 3809967 3811400 D TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: kpn:KPN_03424 putative permease; sugar (Glycoside-Pentoside-Hexuronide) transporter 3809967..3811400 Dickeya zeae Ech1591 8119086 YP_003005648.1 CDS Dd1591_3351 NC_012912.1 3811518 3813086 D PFAM: glycoside hydrolase family 43; KEGG: kpn:KPN_03423 putative glycoside hydrolase; glycoside hydrolase family 43 3811518..3813086 Dickeya zeae Ech1591 8119087 YP_003005649.1 CDS Dd1591_3352 NC_012912.1 3813216 3813941 R KEGG: esa:ESA_01748 hypothetical protein; hypothetical protein complement(3813216..3813941) Dickeya zeae Ech1591 8119088 YP_003005650.1 CDS Dd1591_3353 NC_012912.1 3814066 3814611 R PFAM: GCN5-related N-acetyltransferase; KEGG: pmy:Pmen_1643 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase complement(3814066..3814611) Dickeya zeae Ech1591 8119089 YP_003005651.1 CDS Dd1591_3354 NC_012912.1 3814761 3815183 R KEGG: eca:ECA0825 hypothetical protein; hypothetical protein complement(3814761..3815183) Dickeya zeae Ech1591 8119090 YP_003005652.1 CDS Dd1591_3355 NC_012912.1 3815752 3819285 D TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA0824 pyruvate-flavodoxin oxidoreductase; pyruvate ferredoxin/flavodoxin oxidoreductase 3815752..3819285 Dickeya zeae Ech1591 8119091 YP_003005653.1 CDS Dd1591_3357 NC_012912.1 3819924 3821000 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: eca:ECA0821 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3819924..3821000 Dickeya zeae Ech1591 8119093 YP_003005654.1 CDS Dd1591_3358 NC_012912.1 3821181 3821915 R PFAM: GCN5-related N-acetyltransferase; KEGG: bpy:Bphyt_7127 GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase complement(3821181..3821915) Dickeya zeae Ech1591 8119094 YP_003005655.1 CDS Dd1591_3360 NC_012912.1 3822392 3822847 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bpt:Bpet2973 MarR family transcriptional regulator; MarR family transcriptional regulator 3822392..3822847 Dickeya zeae Ech1591 8119096 YP_003005656.1 CDS Dd1591_3361 NC_012912.1 3822844 3823965 D PFAM: secretion protein HlyD family protein; KEGG: maq:Maqu_0618 secretion protein HlyD family protein; secretion protein HlyD family protein 3822844..3823965 Dickeya zeae Ech1591 8119097 YP_003005657.1 CDS Dd1591_3362 NC_012912.1 3823952 3825571 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_0617 EmrB/QacA family drug resistance transporter; EmrB/QacA subfamily drug resistance transporter 3823952..3825571 Dickeya zeae Ech1591 8119098 YP_003005658.1 CDS Dd1591_3363 NC_012912.1 3825673 3827169 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eca:ECA0819 putative D-mannonate oxidoreductase; Fructuronate reductase 3825673..3827169 Dickeya zeae Ech1591 8119099 YP_003005659.1 CDS Dd1591_3364 NC_012912.1 3827400 3827720 R SMART: helix-turn-helix domain protein; KEGG: xau:Xaut_0314 XRE family transcriptional regulator; XRE family transcriptional regulator complement(3827400..3827720) Dickeya zeae Ech1591 8119100 YP_003005660.1 CDS Dd1591_3365 NC_012912.1 3828075 3829601 D KEGG: eca:ECA0817 oligogalacturonide transporter; oligogalacturonide transporter 3828075..3829601 Dickeya zeae Ech1591 8119901 YP_003005661.1 CDS Dd1591_3366 NC_012912.1 3830144 3831154 R KEGG: eca:ECA0815 hypothetical protein; hypothetical protein complement(3830144..3831154) Dickeya zeae Ech1591 8119902 YP_003005662.1 CDS Dd1591_3367 NC_012912.1 3831835 3832641 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4072 ABC transporter ATP-binding protein; ABC transporter complement(3831835..3832641) Dickeya zeae Ech1591 8119903 YP_003005663.1 CDS Dd1591_3368 NC_012912.1 3832651 3833544 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4073 ABC transporter ATP binding protein; ABC transporter complement(3832651..3833544) Dickeya zeae Ech1591 8119904 YP_003005664.1 CDS Dd1591_3369 NC_012912.1 3833516 3834421 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4074 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(3833516..3834421) Dickeya zeae Ech1591 8119905 YP_003005665.1 CDS Dd1591_3370 NC_012912.1 3834418 3835476 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4075 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(3834418..3835476) Dickeya zeae Ech1591 8119906 YP_003005666.1 CDS Dd1591_3371 NC_012912.1 3835562 3837172 R PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA4076 ABC transporter, substrate binding protein; extracellular solute-binding protein family 5 complement(3835562..3837172) Dickeya zeae Ech1591 8119907 YP_003005667.1 CDS Dd1591_3372 NC_012912.1 3837253 3838407 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA4077 putative mandelate racemase / muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein complement(3837253..3838407) Dickeya zeae Ech1591 8119908 YP_003005668.1 CDS Dd1591_3373 NC_012912.1 3838476 3838733 D KEGG: ypy:YPK_0408 hypothetical protein; hypothetical protein 3838476..3838733 Dickeya zeae Ech1591 8119909 YP_003005669.1 CDS Dd1591_3374 NC_012912.1 3839619 3840011 R KEGG: eca:ECA0809 global regulatory protein; global regulatory protein complement(3839619..3840011) Dickeya zeae Ech1591 8119910 YP_003005670.1 CDS Dd1591_3375 NC_012912.1 3840766 3842727 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3840766..3842727 Dickeya zeae Ech1591 8119911 YP_003005671.1 CDS Dd1591_3376 NC_012912.1 3842848 3843159 D PFAM: protein of unknown function DUF485; KEGG: eca:ECA0807 hypothetical protein; hypothetical protein 3842848..3843159 Dickeya zeae Ech1591 8119912 YP_003005672.1 CDS actP NC_012912.1 3843156 3844814 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 3843156..3844814 Dickeya zeae Ech1591 8119913 YP_003005673.1 CDS Dd1591_3378 NC_012912.1 3844866 3846512 R TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: eca:ECA0784 putative sodium/hydrogen antiporter; Na+/H+ antiporter complement(3844866..3846512) Dickeya zeae Ech1591 8119914 YP_003005674.1 CDS Dd1591_3379 NC_012912.1 3846721 3848088 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: eca:ECA0783 putative permease; Xanthine/uracil/vitamin C permease complement(3846721..3848088) Dickeya zeae Ech1591 8119915 YP_003005675.1 CDS Dd1591_3380 NC_012912.1 3848924 3849844 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase complement(3848924..3849844) Dickeya zeae Ech1591 8119916 YP_003005676.1 CDS Dd1591_3381 NC_012912.1 3850098 3850526 R PFAM: TOBE domain protein; KEGG: cko:CKO_04088 hypothetical protein; TOBE domain-containing protein complement(3850098..3850526) Dickeya zeae Ech1591 8119917 YP_003005677.1 CDS Dd1591_3382 NC_012912.1 3850796 3851668 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_04682 putative sn-glycerol-3-phosphate transport system permease; binding-protein-dependent transport systems inner membrane component 3850796..3851668 Dickeya zeae Ech1591 8119918 YP_003005678.1 CDS Dd1591_3383 NC_012912.1 3851658 3852545 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_04681 putative sn-glycerol-3-phosphate transport system permease; binding-protein-dependent transport systems inner membrane component 3851658..3852545 Dickeya zeae Ech1591 8119919 YP_003005679.1 CDS Dd1591_3384 NC_012912.1 3852556 3853377 D PFAM: metallophosphoesterase; KEGG: kpn:KPN_04680 putative phosphohydrolase; metallophosphoesterase 3852556..3853377 Dickeya zeae Ech1591 8119920 YP_003005680.1 CDS Dd1591_3385 NC_012912.1 3853377 3854462 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: kpe:KPK_4986 sugar ABC transporter, ATP-binding protein; ABC transporter 3853377..3854462 Dickeya zeae Ech1591 8119921 YP_003005681.1 CDS Dd1591_3386 NC_012912.1 3854455 3855777 D PFAM: extracellular solute-binding protein family 1; KEGG: kpe:KPK_4987 ABC transporter, periplasmic substrate-binding protein; extracellular solute-binding protein family 1 3854455..3855777 Dickeya zeae Ech1591 8119922 YP_003005682.1 CDS Dd1591_3387 NC_012912.1 3855842 3856390 R PFAM: sugar transferase; KEGG: vco:VC0395_A2640 putative capsule biosynthesis protein; sugar transferase complement(3855842..3856390) Dickeya zeae Ech1591 8119923 YP_003005683.1 CDS Dd1591_3388 NC_012912.1 3856400 3857374 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3856400..3857374) Dickeya zeae Ech1591 8119924 YP_003005684.1 CDS Dd1591_3389 NC_012912.1 3857525 3859417 D PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: vch:VC0260 mannosyl-transferase; polysaccharide biosynthesis protein CapD 3857525..3859417 Dickeya zeae Ech1591 8119925 YP_003005685.1 CDS Dd1591_3390 NC_012912.1 3859432 3859716 D PFAM: transposase IS3/IS911 family protein; KEGG: spe:Spro_0361 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3859432..3859716 Dickeya zeae Ech1591 8119926 YP_003005686.1 CDS Dd1591_3391 NC_012912.1 3860135 3860512 D PFAM: helix-turn-helix HxlR type; KEGG: atc:AGR_C_1731 hypothetical protein; HxlR family transcriptional regulator 3860135..3860512 Dickeya zeae Ech1591 8119927 YP_003005687.1 CDS Dd1591_3392 NC_012912.1 3860793 3861776 R PFAM: Integrase catalytic region; KEGG: ypg:YpAngola_A2063 transposase; Integrase catalytic region complement(3860793..3861776) Dickeya zeae Ech1591 8119928 YP_003005688.1 CDS Dd1591_3393 NC_012912.1 3861824 3862327 R PFAM: transposase IS3/IS911 family protein; KEGG: ypg:YpAngola_A2064 hypothetical protein; transposase IS3/IS911 family protein complement(3861824..3862327) Dickeya zeae Ech1591 8119929 YP_003005689.1 CDS Dd1591_3395 NC_012912.1 3863948 3864964 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; KEGG: spe:Spro_1601 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3863948..3864964 Dickeya zeae Ech1591 8119931 YP_003005690.1 CDS Dd1591_3396 NC_012912.1 3865595 3866728 D PFAM: transposase IS4 family protein; KEGG: ecr:ECIAI1_0543 putative transposase; transposase IS4 family protein 3865595..3866728 Dickeya zeae Ech1591 8119932 YP_003005691.1 CDS Dd1591_3397 NC_012912.1 3866810 3867955 D PFAM: glycosyl transferase group 1; KEGG: spe:Spro_1603 glycosyl transferase group 1; glycosyl transferase group 1 3866810..3867955 Dickeya zeae Ech1591 8119933 YP_003005692.1 CDS Dd1591_3398 NC_012912.1 3868316 3868915 D KEGG: ecl:EcolC_3406 integrase catalytic region; integrase catalytic region 3868316..3868915 Dickeya zeae Ech1591 8119934 YP_003005693.1 CDS Dd1591_3399 NC_012912.1 3869001 3870134 D PFAM: transposase IS4 family protein; KEGG: ecr:ECIAI1_0543 putative transposase; transposase IS4 family protein 3869001..3870134 Dickeya zeae Ech1591 8119935 YP_003005694.1 CDS Dd1591_3400 NC_012912.1 3870166 3871620 D hypothetical protein 3870166..3871620 Dickeya zeae Ech1591 8119936 YP_003005695.1 CDS Dd1591_3401 NC_012912.1 3871617 3872795 D PFAM: polysaccharide biosynthesis protein; KEGG: plu:plu4800 WzxA protein; polysaccharide biosynthesis protein 3871617..3872795 Dickeya zeae Ech1591 8119937 YP_003005696.1 CDS Dd1591_3402 NC_012912.1 3872773 3873690 D KEGG: aav:Aave_1206 hypothetical protein; hypothetical protein 3872773..3873690 Dickeya zeae Ech1591 8119938 YP_003005697.1 CDS Dd1591_3403 NC_012912.1 3873690 3874820 D PFAM: FAD dependent oxidoreductase; KEGG: pin:Ping_0450 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3873690..3874820 Dickeya zeae Ech1591 8119939 YP_003005698.1 CDS Dd1591_3404 NC_012912.1 3874817 3875836 D PFAM: glycosyl transferase family 2; KEGG: pin:Ping_0449 glycosyl transferase family protein; glycosyl transferase family 2 3874817..3875836 Dickeya zeae Ech1591 8119940 YP_003005699.1 CDS Dd1591_3405 NC_012912.1 3875836 3876624 D KEGG: pin:Ping_0447 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase 3875836..3876624 Dickeya zeae Ech1591 8119941 YP_003005700.1 CDS Dd1591_3406 NC_012912.1 3876709 3877476 D KEGG: pin:Ping_0453 hypothetical protein; hypothetical protein 3876709..3877476 Dickeya zeae Ech1591 8119942 YP_003005701.1 CDS Dd1591_3407 NC_012912.1 3877466 3878293 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pin:Ping_0452 xylose isomerase domain-containing protein; xylose isomerase domain-containing protein 3877466..3878293 Dickeya zeae Ech1591 8119943 YP_003005702.1 CDS Dd1591_3408 NC_012912.1 3878287 3878652 D KEGG: oan:Oant_2966 hypothetical protein; hypothetical protein 3878287..3878652 Dickeya zeae Ech1591 8119944 YP_003005703.1 CDS Dd1591_3409 NC_012912.1 3878656 3879822 D KEGG: pin:Ping_0448 hypothetical protein; hypothetical protein 3878656..3879822 Dickeya zeae Ech1591 8119945 YP_003005704.1 CDS Dd1591_3410 NC_012912.1 3879815 3881974 D hypothetical protein 3879815..3881974 Dickeya zeae Ech1591 8119946 YP_003005705.1 CDS Dd1591_3411 NC_012912.1 3882353 3883639 D KEGG: rsq:Rsph17025_4041 hypothetical protein; hypothetical protein 3882353..3883639 Dickeya zeae Ech1591 8119947 YP_003005706.1 CDS Dd1591_3412 NC_012912.1 3883933 3884415 D PFAM: transposase IS3/IS911 family protein; KEGG: ypg:YpAngola_A2064 hypothetical protein; transposase IS3/IS911 family protein 3883933..3884415 Dickeya zeae Ech1591 8119948 YP_003005707.1 CDS Dd1591_3413 NC_012912.1 3884487 3885053 D KEGG: yps:YPTB1892 putative transposase; putative transposase 3884487..3885053 Dickeya zeae Ech1591 8119949 YP_003005708.1 CDS Dd1591_3414 NC_012912.1 3885055 3886050 R PFAM: Integrase catalytic region; KEGG: ypg:YpAngola_A2063 transposase; Integrase catalytic region complement(3885055..3886050) Dickeya zeae Ech1591 8119950 YP_003005709.1 CDS Dd1591_3415 NC_012912.1 3886086 3886568 R PFAM: transposase IS3/IS911 family protein; KEGG: ypg:YpAngola_A2064 hypothetical protein; transposase IS3/IS911 family protein complement(3886086..3886568) Dickeya zeae Ech1591 8119951 YP_003005710.1 CDS Dd1591_3418 NC_012912.1 3887626 3888102 R KEGG: lhk:LHK_01280 transposase; hypothetical protein complement(3887626..3888102) Dickeya zeae Ech1591 8119954 YP_003005711.1 CDS Dd1591_3420 NC_012912.1 3888576 3889544 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sgl:SG1481 transposase; transposase IS116/IS110/IS902 family protein 3888576..3889544 Dickeya zeae Ech1591 8119956 YP_003005712.1 CDS Dd1591_3421 NC_012912.1 3889868 3890539 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA0776 hypothetical protein; lysine exporter protein LysE/YggA complement(3889868..3890539) Dickeya zeae Ech1591 8119958 YP_003005713.1 CDS lysS NC_012912.1 3890805 3892322 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3890805..3892322) Dickeya zeae Ech1591 8119959 YP_003005714.1 CDS Dd1591_3423 NC_012912.1 3892331 3893429 R KEGG: ypi:YpsIP31758_0882 peptide chain release factor 2; hypothetical protein complement(join(3892331..3893353,3893355..3893429)) Dickeya zeae Ech1591 8119960 YP_003005715.1 CDS Dd1591_3424 NC_012912.1 3893600 3895330 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: spe:Spro_3890 ssDNA exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(3893600..3895330) Dickeya zeae Ech1591 8119961 YP_003005716.1 CDS Dd1591_3425 NC_012912.1 3895354 3896070 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC complement(3895354..3896070) Dickeya zeae Ech1591 8119962 YP_003005717.1 CDS Dd1591_3426 NC_012912.1 3896159 3897058 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: eca:ECA0770 site-specific tyrosine recombinase XerD; tyrosine recombinase XerD complement(3896159..3897058) Dickeya zeae Ech1591 8119963 YP_003005718.1 CDS Dd1591_3427 NC_012912.1 3897317 3898642 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: eca:ECA0769 transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) 3897317..3898642 Dickeya zeae Ech1591 8119964 YP_003005719.1 CDS Dd1591_3428 NC_012912.1 3898782 3899300 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3898782..3899300 Dickeya zeae Ech1591 8119965 YP_003005720.1 CDS Dd1591_3429 NC_012912.1 3899407 3899838 R PFAM: protein of unknown function DUF1434; KEGG: eca:ECA0760 hypothetical protein; hypothetical protein complement(3899407..3899838) Dickeya zeae Ech1591 8119966 YP_003005721.1 CDS Dd1591_3430 NC_012912.1 3899819 3900091 R PFAM: protein of unknown function DUF339; KEGG: eca:ECA0759 hypothetical protein; hypothetical protein complement(3899819..3900091) Dickeya zeae Ech1591 8119967 YP_003005722.1 CDS Dd1591_3431 NC_012912.1 3900396 3901376 D TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: eca:ECA0758 putative global regulator; folate-binding protein YgfZ 3900396..3901376 Dickeya zeae Ech1591 8119968 YP_003005723.1 CDS Dd1591_3432 NC_012912.1 3901457 3902107 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: kpe:KPK_0771 channel protein, hemolysin III family; channel protein, hemolysin III family complement(3901457..3902107) Dickeya zeae Ech1591 8119969 YP_003005724.1 CDS Dd1591_3433 NC_012912.1 3902317 3902925 D KEGG: spe:Spro_3901 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3902317..3902925 Dickeya zeae Ech1591 8119970 YP_003005725.1 CDS Dd1591_3434 NC_012912.1 3903003 3903659 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: aha:AHA_3512 amino acid transporter LysE; lysine exporter protein LysE/YggA complement(3903003..3903659) Dickeya zeae Ech1591 8119971 YP_003005726.1 CDS Dd1591_3435 NC_012912.1 3903793 3906666 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3903793..3906666) Dickeya zeae Ech1591 8119972 YP_003005727.1 CDS Dd1591_3436 NC_012912.1 3906836 3907243 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3906836..3907243) Dickeya zeae Ech1591 8119973 YP_003005728.1 CDS gcvT NC_012912.1 3907275 3908375 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3907275..3908375) Dickeya zeae Ech1591 8119974 YP_003005729.1 CDS Dd1591_3438 NC_012912.1 3909039 3910190 D TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: eca:ECA0742 L-1,2-propanediol oxidoreductase; L-1,2-propanediol oxidoreductase 3909039..3910190 Dickeya zeae Ech1591 8119975 YP_003005730.1 CDS Dd1591_3439 NC_012912.1 3910532 3912211 R catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase complement(3910532..3912211) Dickeya zeae Ech1591 8119976 YP_003005731.1 CDS Dd1591_3440 NC_012912.1 3912267 3913055 R KEGG: yen:YE4016 alpha-acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase; PFAM: alpha-acetolactate decarboxylase; alpha-acetolactate decarboxylase complement(3912267..3913055) Dickeya zeae Ech1591 8119977 YP_003005732.1 CDS Dd1591_3441 NC_012912.1 3913167 3914060 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0739 LysR family transcriptional regulator; LysR family transcriptional regulator 3913167..3914060 Dickeya zeae Ech1591 8119978 YP_003005733.1 CDS Dd1591_3442 NC_012912.1 3914187 3914483 D KEGG: spe:Spro_0646 hypothetical protein; hypothetical protein 3914187..3914483 Dickeya zeae Ech1591 8119979 YP_003005734.1 CDS Dd1591_3443 NC_012912.1 3915030 3915932 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0737 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3915030..3915932) Dickeya zeae Ech1591 8117909 YP_003005735.1 CDS Dd1591_3444 NC_012912.1 3916046 3917041 D PFAM: aldo/keto reductase; KEGG: eca:ECA0736 putative aldo/keto reductase; aldo/keto reductase 3916046..3917041 Dickeya zeae Ech1591 8117910 YP_003005736.1 CDS rsmC NC_012912.1 3917091 3918119 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(3917091..3918119) Dickeya zeae Ech1591 8117911 YP_003005737.1 CDS Dd1591_3446 NC_012912.1 3918266 3918679 D PFAM: DNA polymerase III psi subunit; KEGG: spe:Spro_0650 DNA polymerase III subunit psi; DNA polymerase III subunit psi 3918266..3918679 Dickeya zeae Ech1591 8117912 YP_003005738.1 CDS rimI NC_012912.1 3918648 3919091 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 3918648..3919091 Dickeya zeae Ech1591 8117913 YP_003005739.1 CDS Dd1591_3448 NC_012912.1 3919100 3919402 R hypothetical protein complement(3919100..3919402) Dickeya zeae Ech1591 8117914 YP_003005740.1 CDS Dd1591_3449 NC_012912.1 3919568 3920293 R TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: eta:ETA_06690 purine nucleoside phosphorylase DeoD-type; purine nucleoside phosphorylase complement(3919568..3920293) Dickeya zeae Ech1591 8117915 YP_003005741.1 CDS Dd1591_3450 NC_012912.1 3920388 3921611 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(3920388..3921611) Dickeya zeae Ech1591 8117916 YP_003005742.1 CDS Dd1591_3451 NC_012912.1 3921694 3923025 R KEGG: eca:ECA0728 thymidine phosphorylase; TIGRFAM: thymidine phosphorylase; pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like; thymidine phosphorylase complement(3921694..3923025) Dickeya zeae Ech1591 8117917 YP_003005743.1 CDS Dd1591_3452 NC_012912.1 3923088 3923867 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(3923088..3923867) Dickeya zeae Ech1591 8117918 YP_003005744.1 CDS Dd1591_3453 NC_012912.1 3924357 3924659 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: yen:YE0453 GIY-YIG nuclease superfamily protein; excinuclease ABC subunit C 3924357..3924659 Dickeya zeae Ech1591 8117919 YP_003005745.1 CDS Dd1591_3454 NC_012912.1 3924646 3925149 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0724 putative acetyltransferase; GCN5-related N-acetyltransferase complement(3924646..3925149) Dickeya zeae Ech1591 8117920 YP_003005746.1 CDS Dd1591_3455 NC_012912.1 3925143 3925667 R PFAM: Sterol-binding domain protein; KEGG: eca:ECA0723 putative sterol transferase; Sterol-binding domain-containing protein complement(3925143..3925667) Dickeya zeae Ech1591 8117921 YP_003005747.1 CDS Dd1591_3456 NC_012912.1 3925988 3926986 D PFAM: peptidase U32; KEGG: eca:ECA0722 putative protease; peptidase U32 3925988..3926986 Dickeya zeae Ech1591 8117922 YP_003005748.1 CDS Dd1591_3457 NC_012912.1 3927005 3927883 D PFAM: peptidase U32; KEGG: yen:YE0449 hypothetical protein; peptidase U32 3927005..3927883 Dickeya zeae Ech1591 8117923 YP_003005749.1 CDS Dd1591_3458 NC_012912.1 3927998 3929017 D PFAM: Luciferase-like monooxygenase; KEGG: yen:YE0442 hypothetical protein; hypothetical protein 3927998..3929017 Dickeya zeae Ech1591 8117924 YP_003005750.1 CDS Dd1591_3459 NC_012912.1 3929089 3930963 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(3929089..3930963) Dickeya zeae Ech1591 8117925 YP_003005751.1 CDS Dd1591_3460 NC_012912.1 3931144 3932028 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3931144..3932028) Dickeya zeae Ech1591 8117926 YP_003005752.1 CDS Dd1591_3461 NC_012912.1 3932156 3934276 R KEGG: eca:ECA0716 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; polynucleotide phosphorylase/polyadenylase complement(3932156..3934276) Dickeya zeae Ech1591 8117927 YP_003005753.1 CDS rpsO NC_012912.1 3934536 3934805 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3934536..3934805) Dickeya zeae Ech1591 8117928 YP_003005754.1 CDS Dd1591_3463 NC_012912.1 3934913 3935869 R TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: eca:ECA0714 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B complement(3934913..3935869) Dickeya zeae Ech1591 8117929 YP_003005755.1 CDS rbfA NC_012912.1 3935869 3936270 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3935869..3936270) Dickeya zeae Ech1591 8117930 YP_003005756.1 CDS infB NC_012912.1 3936345 3939062 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3936345..3939062) Dickeya zeae Ech1591 8117931 YP_003005757.1 CDS nusA NC_012912.1 3939088 3940578 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3939088..3940578) Dickeya zeae Ech1591 8117932 YP_003005758.1 CDS Dd1591_3467 NC_012912.1 3940600 3941064 R PFAM: protein of unknown function DUF150; KEGG: ecm:EcSMS35_3466 hypothetical protein; hypothetical protein complement(3940600..3941064) Dickeya zeae Ech1591 8117933 YP_003005759.1 CDS Dd1591_3468 NC_012912.1 3941547 3941882 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: spe:Spro_0486 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(3941547..3941882) Dickeya zeae Ech1591 8117936 YP_003005760.1 CDS glmM NC_012912.1 3942176 3943513 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3942176..3943513) Dickeya zeae Ech1591 8117937 YP_003005761.1 CDS Dd1591_3470 NC_012912.1 3943522 3944355 R KEGG: eca:ECA0699 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(3943522..3944355) Dickeya zeae Ech1591 8117938 YP_003005762.1 CDS Dd1591_3471 NC_012912.1 3944469 3946421 R KEGG: kpe:KPK_0533 ATP-dependent metallopeptidase HflB; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(3944469..3946421) Dickeya zeae Ech1591 8117939 YP_003005763.1 CDS rrmJ NC_012912.1 3946469 3947098 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J complement(3946469..3947098) Dickeya zeae Ech1591 8117940 YP_003005764.1 CDS Dd1591_3473 NC_012912.1 3947258 3947551 D PFAM: protein of unknown function UPF0044; KEGG: eca:ECA0696 hypothetical protein; hypothetical protein 3947258..3947551 Dickeya zeae Ech1591 8117941 YP_003005765.1 CDS Dd1591_3474 NC_012912.1 3947665 3948141 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: ses:SARI_04326 transcription elongation factor GreA; transcription elongation factor GreA complement(3947665..3948141) Dickeya zeae Ech1591 8117942 YP_003005766.1 CDS Dd1591_3475 NC_012912.1 3948407 3949840 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase 3948407..3949840 Dickeya zeae Ech1591 8117943 YP_003005767.1 CDS obgE NC_012912.1 3949942 3951117 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3949942..3951117) Dickeya zeae Ech1591 8117944 YP_003005768.1 CDS Dd1591_3477 NC_012912.1 3951377 3952321 R PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: eca:ECA0692 hypothetical protein; hypothetical protein complement(3951377..3952321) Dickeya zeae Ech1591 8117945 YP_003005769.1 CDS Dd1591_3478 NC_012912.1 3952423 3952680 R TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: esa:ESA_03578 50S ribosomal protein L27; 50S ribosomal protein L27 complement(3952423..3952680) Dickeya zeae Ech1591 8117946 YP_003005770.1 CDS rplU NC_012912.1 3952700 3953011 R TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: eca:ECA0690 50S ribosomal protein L21; 50S ribosomal protein L21 complement(3952700..3953011) Dickeya zeae Ech1591 8117947 YP_003005771.1 CDS Dd1591_3481 NC_012912.1 3953271 3954242 D PFAM: Polyprenyl synthetase; KEGG: eca:ECA0689 octaprenyl diphosphate synthase; octaprenyl diphosphate synthase 3953271..3954242 Dickeya zeae Ech1591 8117949 YP_003005772.1 CDS Dd1591_3482 NC_012912.1 3954244 3954654 R PFAM: MuA-transposase/repressor protein CI DNA-binding; KEGG: eca:ECA0688 hypothetical protein; MuA-transposase/repressor protein CI DNA-binding complement(3954244..3954654) Dickeya zeae Ech1591 8117950 YP_003005773.1 CDS Dd1591_3483 NC_012912.1 3954859 3955245 R PFAM: MuA-transposase/repressor protein CI DNA-binding; KEGG: eca:ECA0687 putative DNA-binding protein; MuA-transposase/repressor protein CI DNA-binding complement(3954859..3955245) Dickeya zeae Ech1591 8117951 YP_003005774.1 CDS Dd1591_3484 NC_012912.1 3955784 3956725 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3955784..3956725) Dickeya zeae Ech1591 8117952 YP_003005775.1 CDS Dd1591_3485 NC_012912.1 3957197 3957667 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3957197..3957667 Dickeya zeae Ech1591 8117953 YP_003005776.1 CDS Dd1591_3486 NC_012912.1 3957720 3958733 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(3957720..3958733) Dickeya zeae Ech1591 8117954 YP_003005777.1 CDS rpsU NC_012912.1 3958965 3959180 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3958965..3959180 Dickeya zeae Ech1591 8117955 YP_003005778.1 CDS dnaG NC_012912.1 3959307 3961061 D synthesizes RNA primers at the replication forks; DNA primase 3959307..3961061 Dickeya zeae Ech1591 8117956 YP_003005779.1 CDS Dd1591_3489 NC_012912.1 3961218 3963053 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3961218..3963053 Dickeya zeae Ech1591 8117957 YP_003005780.1 CDS Dd1591_3490 NC_012912.1 3963742 3964605 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2803 oxidoreductase, zinc-binding; alcohol dehydrogenase zinc-binding domain-containing protein complement(3963742..3964605) Dickeya zeae Ech1591 8117959 YP_003005781.1 CDS Dd1591_3491 NC_012912.1 3964861 3965724 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfl:PFL_2805 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR complement(3964861..3965724) Dickeya zeae Ech1591 8117960 YP_003005782.1 CDS Dd1591_3492 NC_012912.1 3965841 3966890 D PFAM: aldo/keto reductase; KEGG: eca:ECA3293 putative oxidoreductase; aldo/keto reductase 3965841..3966890 Dickeya zeae Ech1591 8117961 YP_003005783.1 CDS Dd1591_3493 NC_012912.1 3966984 3967565 D PFAM: regulatory protein TetR; KEGG: eca:ECA3294 TetR family transcriptional regulator; TetR family transcriptional regulator 3966984..3967565 Dickeya zeae Ech1591 8117962 YP_003005784.1 CDS Dd1591_3494 NC_012912.1 3967578 3968549 R PFAM: ApbE family lipoprotein; KEGG: eca:ECA1970 putative thiamine biosynthesis protein; ApbE family lipoprotein complement(3967578..3968549) Dickeya zeae Ech1591 8117963 YP_003005785.1 CDS Dd1591_3495 NC_012912.1 3968677 3971454 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; HI0933 family protein; NADH:flavin oxidoreductase/NADH oxidase; KEGG: ent:Ent638_2558 flavocytochrome c; flavocytochrome c complement(3968677..3971454) Dickeya zeae Ech1591 8117964 YP_003005786.1 CDS Dd1591_3496 NC_012912.1 3971990 3973417 R PFAM: Aldehyde Dehydrogenase; KEGG: rec:RHECIAT_PC0000919 coniferyl-aldehyde dehydrogenase protein; aldehyde dehydrogenase complement(3971990..3973417) Dickeya zeae Ech1591 8117965 YP_003005787.1 CDS Dd1591_3497 NC_012912.1 3973584 3974633 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE complement(3973584..3974633) Dickeya zeae Ech1591 8117966 YP_003005788.1 CDS Dd1591_3498 NC_012912.1 3974915 3976186 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: bvi:Bcep1808_7013 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase complement(3974915..3976186) Dickeya zeae Ech1591 8117967 YP_003005789.1 CDS Dd1591_3499 NC_012912.1 3976250 3976798 D hypothetical protein 3976250..3976798 Dickeya zeae Ech1591 8117968 YP_003005790.1 CDS Dd1591_3500 NC_012912.1 3977107 3977583 R PFAM: protein of unknown function Spy-related; KEGG: kpe:KPK_3216 spheroplast protein Y; hypothetical protein complement(3977107..3977583) Dickeya zeae Ech1591 8117969 YP_003005791.1 CDS uhpT NC_012912.1 3977831 3979222 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter complement(3977831..3979222) Dickeya zeae Ech1591 8117970 YP_003005792.1 CDS Dd1591_3502 NC_012912.1 3979374 3980717 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(3979374..3980717) Dickeya zeae Ech1591 8117971 YP_003005793.1 CDS Dd1591_3503 NC_012912.1 3980717 3982234 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB complement(3980717..3982234) Dickeya zeae Ech1591 8117972 YP_003005794.1 CDS Dd1591_3504 NC_012912.1 3982234 3982824 R response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA complement(3982234..3982824) Dickeya zeae Ech1591 8117973 YP_003005795.1 CDS Dd1591_3505 NC_012912.1 3983067 3983363 R KEGG: eca:ECA0656 hypothetical protein; hypothetical protein complement(3983067..3983363) Dickeya zeae Ech1591 8117974 YP_003005796.1 CDS Dd1591_3506 NC_012912.1 3983475 3984632 R PFAM: methyltransferase small; KEGG: eca:ECA0654 hypothetical protein; rRNA (guanine-N(2)-)-methyltransferase complement(3983475..3984632) Dickeya zeae Ech1591 8117975 YP_003005797.1 CDS Dd1591_3507 NC_012912.1 3985076 3986029 D PFAM: Integral membrane protein TerC; KEGG: eca:ECA0652 hypothetical protein; Integral membrane protein TerC 3985076..3986029 Dickeya zeae Ech1591 8117976 YP_003005798.1 CDS Dd1591_3508 NC_012912.1 3986068 3986616 R KEGG: eca:ECA0648 hypothetical protein; hypothetical protein complement(3986068..3986616) Dickeya zeae Ech1591 8117977 YP_003005799.1 CDS Dd1591_3509 NC_012912.1 3986730 3988220 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: eca:ECA0647 altronate hydrolase; altronate dehydratase complement(3986730..3988220) Dickeya zeae Ech1591 8117978 YP_003005800.1 CDS Dd1591_3510 NC_012912.1 3988239 3989690 R catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase complement(3988239..3989690) Dickeya zeae Ech1591 8117979 YP_003005801.1 CDS Dd1591_3511 NC_012912.1 3990081 3991490 R catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase complement(3990081..3991490) Dickeya zeae Ech1591 8117980 YP_003005802.1 CDS Dd1591_3512 NC_012912.1 3992004 3993305 D TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA0644 galacturonate transporter; d-galactonate transporter 3992004..3993305 Dickeya zeae Ech1591 8117981 YP_003005803.1 CDS Dd1591_3513 NC_012912.1 3993666 3994445 D regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization.; DNA-binding transcriptional repressor ExuR 3993666..3994445 Dickeya zeae Ech1591 8117982 YP_003005804.1 CDS Dd1591_3514 NC_012912.1 3995081 3995755 D PFAM: SNARE associated Golgi protein; KEGG: eca:ECA0642 DedA family membrane protein; hypothetical protein 3995081..3995755 Dickeya zeae Ech1591 8117983 YP_003005805.1 CDS Dd1591_3515 NC_012912.1 3995759 3996100 D KEGG: eca:ECA0641 hypothetical protein; hypothetical protein 3995759..3996100 Dickeya zeae Ech1591 8117984 YP_003005806.1 CDS Dd1591_3516 NC_012912.1 3996336 3996641 D PFAM: protein of unknown function DUF883 ElaB; KEGG: eca:ECA0639 hypothetical protein; hypothetical protein 3996336..3996641 Dickeya zeae Ech1591 8117985 YP_003005807.1 CDS Dd1591_3517 NC_012912.1 3996645 3997043 D KEGG: ypi:YpsIP31758_0482 hypothetical protein; hypothetical protein 3996645..3997043 Dickeya zeae Ech1591 8117986 YP_003005808.1 CDS Dd1591_3518 NC_012912.1 3997040 3997342 D KEGG: yen:YE3717 hypothetical protein; hypothetical protein 3997040..3997342 Dickeya zeae Ech1591 8119981 YP_003005809.1 CDS Dd1591_3519 NC_012912.1 3997658 3998053 D PFAM: DoxX family protein; KEGG: eca:ECA0636 hypothetical protein; DoxX family protein 3997658..3998053 Dickeya zeae Ech1591 8119982 YP_003005810.1 CDS Dd1591_3520 NC_012912.1 3998156 3999142 D PFAM: Glutathione S-transferase domain; KEGG: eca:ECA0635 hypothetical protein; Glutathione transferase 3998156..3999142 Dickeya zeae Ech1591 8119983 YP_003005811.1 CDS Dd1591_3521 NC_012912.1 3999240 4000136 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0634 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3999240..4000136) Dickeya zeae Ech1591 8119984 YP_003005812.1 CDS Dd1591_3522 NC_012912.1 4000246 4000953 D PFAM: Pirin domain protein; KEGG: eca:ECA0633 hypothetical protein; Pirin domain-containing protein 4000246..4000953 Dickeya zeae Ech1591 8119985 YP_003005813.1 CDS Dd1591_3523 NC_012912.1 4001114 4001623 D Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4001114..4001623 Dickeya zeae Ech1591 8119986 YP_003005814.1 CDS Dd1591_3524 NC_012912.1 4001874 4002485 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(4001874..4002485) Dickeya zeae Ech1591 8119987 YP_003005815.1 CDS Dd1591_3525 NC_012912.1 4002595 4002960 R PFAM: diacylglycerol kinase; KEGG: eca:ECA0629 diacylglycerol kinase; diacylglycerol kinase complement(4002595..4002960) Dickeya zeae Ech1591 8119988 YP_003005816.1 CDS Dd1591_3526 NC_012912.1 4003090 4005567 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4003090..4005567 Dickeya zeae Ech1591 8119989 YP_003005817.1 CDS ubiA NC_012912.1 4005611 4006495 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(4005611..4006495) Dickeya zeae Ech1591 8119990 YP_003005818.1 CDS Dd1591_3528 NC_012912.1 4006496 4007011 R PFAM: Chorismate lyase; KEGG: eca:ECA0626 chorismate pyruvate lyase; Chorismate lyase complement(4006496..4007011) Dickeya zeae Ech1591 8119991 YP_003005819.1 CDS Dd1591_3529 NC_012912.1 4007363 4009009 R TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: kpe:KPK_5137 chaperonin GroL; chaperonin GroEL complement(4007363..4009009) Dickeya zeae Ech1591 8119992 YP_003005820.1 CDS groES NC_012912.1 4009055 4009348 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(4009055..4009348) Dickeya zeae Ech1591 8119993 YP_003005821.1 CDS Dd1591_3531 NC_012912.1 4009542 4010042 R PFAM: FxsA cytoplasmic membrane protein; KEGG: spe:Spro_0407 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein complement(4009542..4010042) Dickeya zeae Ech1591 8119994 YP_003005822.1 CDS aspA NC_012912.1 4010486 4011925 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4010486..4011925 Dickeya zeae Ech1591 8119995 YP_003005823.1 CDS Dd1591_3533 NC_012912.1 4012112 4013413 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4012112..4013413 Dickeya zeae Ech1591 8119996 YP_003005824.1 CDS Dd1591_3534 NC_012912.1 4013528 4013908 D copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4013528..4013908 Dickeya zeae Ech1591 8119997 YP_003005825.1 CDS dipZ NC_012912.1 4013884 4015602 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor 4013884..4015602 Dickeya zeae Ech1591 8119998 YP_003005826.1 CDS Dd1591_3536 NC_012912.1 4015690 4016265 D PFAM: regulatory protein TetR; KEGG: yps:YPTB0395 putative transcriptional regulator; putative transcriptional regulator 4015690..4016265 Dickeya zeae Ech1591 8119999 YP_003005827.1 CDS Dd1591_3537 NC_012912.1 4016665 4017924 D PFAM: integrase family protein; KEGG: stt:t4371 bacteriophage integrase; integrase family protein 4016665..4017924 Dickeya zeae Ech1591 8120001 YP_003005828.1 CDS Dd1591_3538 NC_012912.1 4018065 4018235 R KEGG: ecq:ECED1_1795 conserved hypothetical protein; possible repressor (interpro); hypothetical protein complement(4018065..4018235) Dickeya zeae Ech1591 8120002 YP_003005829.1 CDS Dd1591_3539 NC_012912.1 4018376 4018717 D KEGG: yen:YE3495A hypothetical protein; hypothetical protein 4018376..4018717 Dickeya zeae Ech1591 8120003 YP_003005830.1 CDS Dd1591_3542 NC_012912.1 4019629 4020372 D KEGG: eum:ECUMN_2300 putative MobC mobilization protein; putative MobC mobilization protein 4019629..4020372 Dickeya zeae Ech1591 8120006 YP_003005831.1 CDS Dd1591_3543 NC_012912.1 4020431 4020649 D PFAM: Post-segregation antitoxin CcdA; KEGG: eca:ECA0511 plasmid maintenance protein CcdA; plasmid maintenance protein CcdA 4020431..4020649 Dickeya zeae Ech1591 8120007 YP_003005832.1 CDS Dd1591_3544 NC_012912.1 4020652 4020957 D controlled cell death protein; post-segregation toxin; toxin addiction system; plasmid maintenance protein CcdB 4020652..4020957 Dickeya zeae Ech1591 8120008 YP_003005833.1 CDS Dd1591_3545 NC_012912.1 4021156 4021998 R PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: abc:ACICU_00863 site-specific DNA methylase; D12 class N6 adenine-specific DNA methyltransferase complement(4021156..4021998) Dickeya zeae Ech1591 8120009 YP_003005834.1 CDS Dd1591_3546 NC_012912.1 4022084 4023805 R SMART: AAA ATPase; KEGG: psa:PST_3231 hypothetical protein; AAA ATPase complement(4022084..4023805) Dickeya zeae Ech1591 8120010 YP_003005835.1 CDS Dd1591_3547 NC_012912.1 4024096 4024590 R PFAM: GCN5-related N-acetyltransferase; KEGG: stt:t4359 hypothetical protein; GCN5-related N-acetyltransferase complement(4024096..4024590) Dickeya zeae Ech1591 8120011 YP_003005836.1 CDS Dd1591_3548 NC_012912.1 4024587 4024880 R PFAM: Protein of unknown function DUF1778; KEGG: eca:ECA0958 hypothetical protein; hypothetical protein complement(4024587..4024880) Dickeya zeae Ech1591 8120012 YP_003005837.1 CDS Dd1591_3549 NC_012912.1 4025405 4025905 R KEGG: eca:ECA0510 putative capsular polysacharide biosynthesis transferase; putative capsular polysacharide biosynthesis transferase complement(4025405..4025905) Dickeya zeae Ech1591 8120013 YP_003005838.1 CDS Dd1591_3550 NC_012912.1 4025932 4027326 R KEGG: eca:ECA0509 hypothetical protein; hypothetical protein complement(4025932..4027326) Dickeya zeae Ech1591 8120014 YP_003005839.1 CDS Dd1591_3551 NC_012912.1 4027365 4027772 R KEGG: eca:ECA0508 hypothetical protein; hypothetical protein complement(4027365..4027772) Dickeya zeae Ech1591 8120015 YP_003005840.1 CDS Dd1591_3552 NC_012912.1 4027791 4028903 R PFAM: glycosyl transferase group 1; Protein of unknown function DUF1972; KEGG: eca:ECA0507 putative capsular polysaccharide bisynthesis glycosyl transferase; glycosyl transferase group 1 complement(4027791..4028903) Dickeya zeae Ech1591 8120016 YP_003005841.1 CDS Dd1591_3553 NC_012912.1 4028905 4030116 R PFAM: glycosyl transferase group 1; KEGG: eca:ECA0506 capsular polysaccharide bisynthesis glycosyl transferase; glycosyl transferase group 1 complement(4028905..4030116) Dickeya zeae Ech1591 8120017 YP_003005842.1 CDS Dd1591_3554 NC_012912.1 4030126 4031115 R PFAM: glycosyl transferase family 2; KEGG: eca:ECA0505 capsular polysaccharide bisynthesis glycosyl transferase; glycosyl transferase family 2 complement(4030126..4031115) Dickeya zeae Ech1591 8120018 YP_003005843.1 CDS Dd1591_3555 NC_012912.1 4031108 4032490 R KEGG: eca:ECA0504 putative capsular polysaccharide bisynthesis protein; putative capsular polysaccharide biosynthesis protein complement(4031108..4032490) Dickeya zeae Ech1591 8120019 YP_003005844.1 CDS Dd1591_3556 NC_012912.1 4032487 4033698 R KEGG: eca:ECA0503 putative capsular polysaccharide bisynthesis protein; putative capsular polysaccharide biosynthesis protein complement(4032487..4033698) Dickeya zeae Ech1591 8120020 YP_003005845.1 CDS Dd1591_3557 NC_012912.1 4033695 4035827 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: eca:ECA0502 putative capsulatr polysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein complement(4033695..4035827) Dickeya zeae Ech1591 8120021 YP_003005846.1 CDS Dd1591_3558 NC_012912.1 4035830 4036387 R PFAM: polysaccharide export protein; KEGG: eca:ECA0501 putative capsular polysaccharide export protein; polysaccharide export protein complement(4035830..4036387) Dickeya zeae Ech1591 8120022 YP_003005847.1 CDS Dd1591_3559 NC_012912.1 4036389 4037675 R KEGG: eca:ECA0500 putative capsular polysaccharide biosynthesis protein; putative capsular polysaccharide biosynthesis protein complement(4036389..4037675) Dickeya zeae Ech1591 8120023 YP_003005848.1 CDS Dd1591_3560 NC_012912.1 4037665 4039071 R KEGG: eca:ECA0499 putative capsular polysaccharide biosynthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; UDP-phosphate glucose phosphotransferase complement(4037665..4039071) Dickeya zeae Ech1591 8120024 YP_003005849.1 CDS Dd1591_3561 NC_012912.1 4039548 4040738 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: efe:EFER_1473 putative mandelate racemase; mandelate racemase/muconate lactonizing protein complement(4039548..4040738) Dickeya zeae Ech1591 8120025 YP_003005850.1 CDS Dd1591_3562 NC_012912.1 4041015 4042037 D PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ses:SARI_03945 hypothetical protein; LacI family transcriptional regulator 4041015..4042037 Dickeya zeae Ech1591 8120026 YP_003005851.1 CDS Dd1591_3563 NC_012912.1 4042054 4042485 R KEGG: bmn:BMA10247_3037 MerR family transcriptional regulator; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator complement(4042054..4042485) Dickeya zeae Ech1591 8120027 YP_003005852.1 CDS Dd1591_3564 NC_012912.1 4042555 4044912 D TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_A4439 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; heavy metal translocating P-type ATPase 4042555..4044912 Dickeya zeae Ech1591 8120028 YP_003005853.1 CDS Dd1591_3565 NC_012912.1 4045006 4046160 R PFAM: monooxygenase FAD-binding; KEGG: kpn:KPN_01663 putative flavoprotein monooxygenase; monooxygenase FAD-binding complement(4045006..4046160) Dickeya zeae Ech1591 8120029 YP_003005854.1 CDS Dd1591_3566 NC_012912.1 4046218 4047186 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: eta:ETA_33390 vanillate O-demethylase oxidoreductase; ferredoxin complement(4046218..4047186) Dickeya zeae Ech1591 8120030 YP_003005855.1 CDS Dd1591_3567 NC_012912.1 4047201 4048235 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: kpe:KPK_2713 Rieske 2Fe-2S domain protein; Rieske (2Fe-2S) domain-containing protein complement(4047201..4048235) Dickeya zeae Ech1591 8120031 YP_003005856.1 CDS Dd1591_3568 NC_012912.1 4048389 4049327 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eta:ETA_33420 putative transcriptional regulator; LysR family transcriptional regulator 4048389..4049327 Dickeya zeae Ech1591 8120032 YP_003005857.1 CDS Dd1591_3569 NC_012912.1 4049558 4050058 D TIGRFAM: OHCU decarboxylase; KEGG: kpn:KPN_01665 hypothetical protein; OHCU decarboxylase 4049558..4050058 Dickeya zeae Ech1591 8120033 YP_003005858.1 CDS Dd1591_3570 NC_012912.1 4050055 4050387 D TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: eta:ETA_26140 transthyretin family protein; hydroxyisourate hydrolase 4050055..4050387 Dickeya zeae Ech1591 8120034 YP_003005859.1 CDS Dd1591_3571 NC_012912.1 4050400 4051062 R TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: bja:blr7948 acetyltransferase; phosphonate metabolism protein complement(4050400..4051062) Dickeya zeae Ech1591 8120035 YP_003005860.1 CDS Dd1591_3572 NC_012912.1 4051289 4052113 D PFAM: Domain of unknown function DUF1868; KEGG: ccs:CCNA_01868 hypothetical protein; hypothetical protein 4051289..4052113 Dickeya zeae Ech1591 8120036 YP_003005861.1 CDS Dd1591_3573 NC_012912.1 4052299 4053861 R TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eca:ECA3941 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase, F subunit complement(4052299..4053861) Dickeya zeae Ech1591 8120037 YP_003005862.1 CDS Dd1591_3574 NC_012912.1 4053935 4054498 R with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C complement(4053935..4054498) Dickeya zeae Ech1591 8120038 YP_003005863.1 CDS Dd1591_3575 NC_012912.1 4054603 4055601 R PFAM: transport system permease protein; KEGG: cko:CKO_00852 hypothetical protein; transport system permease protein complement(4054603..4055601) Dickeya zeae Ech1591 8120039 YP_003005864.1 CDS Dd1591_3576 NC_012912.1 4055601 4056593 R PFAM: periplasmic binding protein; KEGG: cko:CKO_00919 hypothetical protein; periplasmic binding protein complement(4055601..4056593) Dickeya zeae Ech1591 8120040 YP_003005865.1 CDS Dd1591_3577 NC_012912.1 4056590 4057405 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4254 putative iron(III) ABC transporter ATP-binding protein; ABC transporter complement(4056590..4057405) Dickeya zeae Ech1591 8120041 YP_003005866.1 CDS Dd1591_3578 NC_012912.1 4057650 4057892 D KEGG: spe:Spro_3158 hypothetical protein; hypothetical protein 4057650..4057892 Dickeya zeae Ech1591 8120042 YP_003005867.1 CDS Dd1591_3579 NC_012912.1 4057911 4058534 R SMART: metal-dependent phosphohydrolase HD region; KEGG: spe:Spro_0128 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(4057911..4058534) Dickeya zeae Ech1591 8120043 YP_003005868.1 CDS Dd1591_3580 NC_012912.1 4059040 4060758 R PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; KEGG: eca:ECA1683 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4059040..4060758) Dickeya zeae Ech1591 8120044 YP_003005869.1 CDS Dd1591_3581 NC_012912.1 4061125 4061877 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aca:ACP_2417 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(4061125..4061877) Dickeya zeae Ech1591 8120045 YP_003005870.1 CDS Dd1591_3582 NC_012912.1 4061911 4062630 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: eca:ECA0474 enterobactin synthetase component D (4'-phosphopantetheinyl transferase); 4'-phosphopantetheinyl transferase complement(4061911..4062630) Dickeya zeae Ech1591 8120046 YP_003005871.1 CDS Dd1591_3583 NC_012912.1 4063091 4063963 R PFAM: TatD-related deoxyribonuclease; KEGG: eca:ECA0472 TatD family deoxyribonuclease; TatD-related deoxyribonuclease complement(4063091..4063963) Dickeya zeae Ech1591 8120047 YP_003005872.1 CDS Dd1591_3584 NC_012912.1 4063973 4064164 R KEGG: eca:ECA0471 hypothetical protein; hypothetical protein complement(4063973..4064164) Dickeya zeae Ech1591 8120048 YP_003005873.1 CDS Dd1591_3585 NC_012912.1 4064301 4064957 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: eca:ECA0469 periplasmic protein; periplasmic protein complement(4064301..4064957) Dickeya zeae Ech1591 8120049 YP_003005874.1 CDS Dd1591_3586 NC_012912.1 4065315 4066904 R TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: spe:Spro_0652 peptide chain release factor 3; peptide chain release factor 3 complement(4065315..4066904) Dickeya zeae Ech1591 8120050 YP_003005875.1 CDS Dd1591_3587 NC_012912.1 4067281 4067961 R KEGG: eca:ECA0466 hypothetical protein; hypothetical protein complement(4067281..4067961) Dickeya zeae Ech1591 8120051 YP_003005876.1 CDS serB NC_012912.1 4068088 4069065 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4068088..4069065 Dickeya zeae Ech1591 8120052 YP_003005877.1 CDS Dd1591_3589 NC_012912.1 4069131 4070516 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4069131..4070516 Dickeya zeae Ech1591 8120053 YP_003005878.1 CDS Dd1591_3590 NC_012912.1 4070588 4071844 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4070588..4071844 Dickeya zeae Ech1591 8120054 YP_003005879.1 CDS Dd1591_3591 NC_012912.1 4071859 4072473 R TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: eca:ECA0462 putative 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(4071859..4072473) Dickeya zeae Ech1591 8120055 YP_003005880.1 CDS Dd1591_3592 NC_012912.1 4072780 4073109 R PFAM: protein of unknown function DUF710; KEGG: yen:YE3398 Z-ring-associated protein; Z-ring-associated protein complement(4072780..4073109) Dickeya zeae Ech1591 8120057 YP_003005881.1 CDS Dd1591_3593 NC_012912.1 4073437 4074027 D the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 4073437..4074027 Dickeya zeae Ech1591 8120058 YP_003005882.1 CDS Dd1591_3594 NC_012912.1 4074065 4075393 D exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 4074065..4075393 Dickeya zeae Ech1591 8120059 YP_003005883.1 CDS Dd1591_3595 NC_012912.1 4075390 4076568 D Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 4075390..4076568 Dickeya zeae Ech1591 8120060 YP_003005884.1 CDS Dd1591_3596 NC_012912.1 4076590 4077801 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: eca:ECA0457 hypothetical protein; hypothetical protein 4076590..4077801 Dickeya zeae Ech1591 8117427 YP_003005885.1 CDS Dd1591_3597 NC_012912.1 4078465 4078815 D KEGG: ecm:EcSMS35_A0112 colicin-M immunity protein Cmi; hypothetical protein 4078465..4078815 Dickeya zeae Ech1591 8117428 YP_003005886.1 CDS Dd1591_3599 NC_012912.1 4079448 4081205 R PFAM: Hemolysin-type calcium-binding region; KEGG: sme:SM_b20079 putative hemolysin-adenlyate cyclase protein; Hemolysin-type calcium-binding region complement(4079448..4081205) Dickeya zeae Ech1591 8117430 YP_003005887.1 CDS Dd1591_3600 NC_012912.1 4081209 4081574 R hypothetical protein complement(4081209..4081574) Dickeya zeae Ech1591 8117431 YP_003005888.1 CDS Dd1591_3601 NC_012912.1 4081571 4082368 R hypothetical protein complement(4081571..4082368) Dickeya zeae Ech1591 8117432 YP_003005889.1 CDS Dd1591_3602 NC_012912.1 4082535 4082747 R KEGG: ypi:YpsIP31758_2860 hypothetical protein; hypothetical protein complement(4082535..4082747) Dickeya zeae Ech1591 8117433 YP_003005890.1 CDS Dd1591_3603 NC_012912.1 4082928 4084556 D PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA0448 putative ABC transporter extracellular solute binding protein; extracellular solute-binding protein family 5 4082928..4084556 Dickeya zeae Ech1591 8117434 YP_003005891.1 CDS Dd1591_3604 NC_012912.1 4084534 4085499 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0447 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 4084534..4085499 Dickeya zeae Ech1591 8117435 YP_003005892.1 CDS Dd1591_3605 NC_012912.1 4085489 4086400 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0446 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 4085489..4086400 Dickeya zeae Ech1591 8117436 YP_003005893.1 CDS Dd1591_3606 NC_012912.1 4086397 4088097 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: eca:ECA0445 ABC transporter ATP binding protein; ABC transporter 4086397..4088097 Dickeya zeae Ech1591 8117437 YP_003005894.1 CDS Dd1591_3607 NC_012912.1 4088338 4089192 R PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA0442 L-rhamnose operon transcriptional activator; AraC family transcriptional regulator complement(4088338..4089192) Dickeya zeae Ech1591 8117438 YP_003005895.1 CDS Dd1591_3608 NC_012912.1 4089363 4090199 R activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS complement(4089363..4090199) Dickeya zeae Ech1591 8117439 YP_003005896.1 CDS rhaB NC_012912.1 4090549 4092021 D catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4090549..4092021 Dickeya zeae Ech1591 8117440 YP_003005897.1 CDS Dd1591_3610 NC_012912.1 4092018 4093274 D catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4092018..4093274 Dickeya zeae Ech1591 8117441 YP_003005898.1 CDS Dd1591_3611 NC_012912.1 4093298 4094128 D KEGG: eca:ECA0438 rhamnulose-1-phosphate aldolase; TIGRFAM: rhamnulose-1-phosphate aldolase; PFAM: class II aldolase/adducin family protein; rhamnulose-1-phosphate aldolase 4093298..4094128 Dickeya zeae Ech1591 8117442 YP_003005899.1 CDS Dd1591_3612 NC_012912.1 4094345 4094659 D TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: ecl:EcolC_4116 L-rhamnose 1-epimerase; L-rhamnose 1-epimerase 4094345..4094659 Dickeya zeae Ech1591 8117443 YP_003005900.1 CDS Dd1591_3613 NC_012912.1 4095105 4096697 D PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: eca:ECA0436 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4095105..4096697 Dickeya zeae Ech1591 8117444 YP_003005901.1 CDS Dd1591_3614 NC_012912.1 4096794 4097600 R PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: seg:SG3764 putative transcriptional regulator; IclR family transcriptional regulator complement(4096794..4097600) Dickeya zeae Ech1591 8117445 YP_003005902.1 CDS Dd1591_3615 NC_012912.1 4097747 4098457 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: plu:plu0518 hypothetical protein; metal dependent phosphohydrolase complement(4097747..4098457) Dickeya zeae Ech1591 8117446 YP_003005903.1 CDS Dd1591_3616 NC_012912.1 4099143 4100372 D PFAM: major facilitator superfamily MFS_1; KEGG: pmr:PMI3395 MFS-family transporter; major facilitator superfamily protein 4099143..4100372 Dickeya zeae Ech1591 8117447 YP_003005904.1 CDS Dd1591_3617 NC_012912.1 4100487 4101947 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: spe:Spro_1811 TrkH family potassium uptake protein; potassium uptake protein, TrkH family complement(4100487..4101947) Dickeya zeae Ech1591 8117448 YP_003005905.1 CDS Dd1591_3618 NC_012912.1 4102530 4103060 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 4102530..4103060 Dickeya zeae Ech1591 8117449 YP_003005906.1 CDS Dd1591_3619 NC_012912.1 4103230 4103754 D PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rso:RS05577 transcription regulator protein; AsnC family transcriptional regulator 4103230..4103754 Dickeya zeae Ech1591 8117450 YP_003005907.1 CDS Dd1591_3620 NC_012912.1 4104304 4105506 D KEGG: aca:ACP_3248 hypothetical protein; hypothetical protein 4104304..4105506 Dickeya zeae Ech1591 8117451 YP_003005908.1 CDS Dd1591_3621 NC_012912.1 4105675 4106328 R KEGG: plu:plu3301 hypothetical protein; hypothetical protein complement(4105675..4106328) Dickeya zeae Ech1591 8117452 YP_003005909.1 CDS Dd1591_3622 NC_012912.1 4106325 4107416 R PFAM: SMC domain protein; KEGG: plu:plu3302 hypothetical protein; SMC domain-containing protein complement(4106325..4107416) Dickeya zeae Ech1591 8117453 YP_003005910.1 CDS Dd1591_3623 NC_012912.1 4108130 4109146 R catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; 1-aminocyclopropane-1-carboxylate deaminase complement(4108130..4109146) Dickeya zeae Ech1591 8117454 YP_003005911.1 CDS Dd1591_3624 NC_012912.1 4109392 4110324 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA2075 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4109392..4110324) Dickeya zeae Ech1591 8117455 YP_003005912.1 CDS Dd1591_3625 NC_012912.1 4110718 4112136 R PFAM: peptidase M20; KEGG: bcm:Bcenmc03_1567 peptidase M20; hypothetical protein complement(4110718..4112136) Dickeya zeae Ech1591 8117456 YP_003005913.1 CDS Dd1591_3626 NC_012912.1 4112172 4113035 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: vei:Veis_4730 ABC transporter related; ABC transporter complement(4112172..4113035) Dickeya zeae Ech1591 8117457 YP_003005914.1 CDS Dd1591_3627 NC_012912.1 4113032 4114006 R KEGG: vei:Veis_4731 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase complement(4113032..4114006) Dickeya zeae Ech1591 8117458 YP_003005915.1 CDS Dd1591_3628 NC_012912.1 4114108 4115034 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_3822 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4114108..4115034) Dickeya zeae Ech1591 8117459 YP_003005916.1 CDS Dd1591_3629 NC_012912.1 4115044 4115961 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_3823 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4115044..4115961) Dickeya zeae Ech1591 8117460 YP_003005917.1 CDS Dd1591_3630 NC_012912.1 4116007 4117551 R PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_4734 extracellular solute-binding protein; extracellular solute-binding protein family 5 complement(4116007..4117551) Dickeya zeae Ech1591 8117461 YP_003005918.1 CDS Dd1591_3631 NC_012912.1 4118371 4119006 D PFAM: delta-endotoxin CytB; KEGG: asa:ASA_2128 cytolytic delta-endotoxin (insecticidal protein); delta-endotoxin CytB 4118371..4119006 Dickeya zeae Ech1591 8117462 YP_003005919.1 CDS Dd1591_3632 NC_012912.1 4119077 4119676 D KEGG: asa:ASA_2128 cytolytic delta-endotoxin (insecticidal protein); hypothetical protein 4119077..4119676 Dickeya zeae Ech1591 8117463 YP_003005920.1 CDS Dd1591_3633 NC_012912.1 4119711 4120322 D KEGG: asa:ASA_2128 cytolytic delta-endotoxin (insecticidal protein); hypothetical protein 4119711..4120322 Dickeya zeae Ech1591 8117464 YP_003005921.1 CDS Dd1591_3634 NC_012912.1 4120388 4121050 D KEGG: asa:ASA_2128 cytolytic delta-endotoxin (insecticidal protein); cytolytic delta-endotoxin 4120388..4121050 Dickeya zeae Ech1591 8117465 YP_003005922.1 CDS Dd1591_3635 NC_012912.1 4121134 4121931 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: kpe:KPK_3986 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(4121134..4121931) Dickeya zeae Ech1591 8117466 YP_003005923.1 CDS Dd1591_3636 NC_012912.1 4121942 4123453 R PFAM: carbohydrate kinase FGGY; KEGG: kpe:KPK_3981 putative glycerol kinase; carbohydrate kinase FGGY complement(4121942..4123453) Dickeya zeae Ech1591 8117467 YP_003005924.1 CDS Dd1591_3637 NC_012912.1 4123446 4124513 R PFAM: inner-membrane translocator; KEGG: efe:EFER_2521 putative transport system permease for a carbohydrate-related molecule; inner-membrane translocator complement(4123446..4124513) Dickeya zeae Ech1591 8117468 YP_003005925.1 CDS Dd1591_3638 NC_012912.1 4124530 4126128 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: efe:EFER_2520 putative transport system ATP-binding protein for a carbohydrate-related molecule; ABC transporter complement(4124530..4126128) Dickeya zeae Ech1591 8117469 YP_003005926.1 CDS Dd1591_3639 NC_012912.1 4126128 4126751 R KEGG: efe:EFER_2519 putative lipoprotein; putative lipoprotein complement(4126128..4126751) Dickeya zeae Ech1591 8117470 YP_003005927.1 CDS Dd1591_3640 NC_012912.1 4126796 4127731 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: kpe:KPK_3982 sugar ABC transporter, periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator complement(4126796..4127731) Dickeya zeae Ech1591 8117471 YP_003005928.1 CDS Dd1591_3641 NC_012912.1 4127824 4128627 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bov:BOV_1573 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(4127824..4128627) Dickeya zeae Ech1591 8117472 YP_003005929.1 CDS Dd1591_3642 NC_012912.1 4128641 4129564 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: ypg:YpAngola_A0910 putative transketolase, C-terminal subunit; transketolase central region complement(4128641..4129564) Dickeya zeae Ech1591 8117473 YP_003005930.1 CDS Dd1591_3643 NC_012912.1 4129564 4130367 R PFAM: Transketolase domain protein; KEGG: pst:PSPTO_2401 transketolase, N-terminal subunit; transketolase domain-containing protein complement(4129564..4130367) Dickeya zeae Ech1591 8117474 YP_003005931.1 CDS Dd1591_3644 NC_012912.1 4130744 4131535 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: sml:Smlt4437 putative aga operon DeoR family transcriptional repressor; DeoR family transcriptional regulator 4130744..4131535 Dickeya zeae Ech1591 8117475 YP_003005932.1 CDS Dd1591_3645 NC_012912.1 4131656 4132816 D PFAM: SMC domain protein; KEGG: hch:HCH_03469 ATPase; SMC domain-containing protein 4131656..4132816 Dickeya zeae Ech1591 8117476 YP_003005933.1 CDS Dd1591_3646 NC_012912.1 4132813 4133436 D KEGG: rru:Rru_A3750 hypothetical protein; hypothetical protein 4132813..4133436 Dickeya zeae Ech1591 8117477 YP_003005934.1 CDS Dd1591_3647 NC_012912.1 4133495 4134832 R PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2121 major facilitator transporter; major facilitator superfamily protein complement(4133495..4134832) Dickeya zeae Ech1591 8117478 YP_003005935.1 CDS Dd1591_3648 NC_012912.1 4135101 4135898 D KEGG: eca:ECA0432 hypothetical protein; hypothetical protein 4135101..4135898 Dickeya zeae Ech1591 8117479 YP_003005936.1 CDS Dd1591_3649 NC_012912.1 4136231 4136854 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: msu:MS2252 hypothetical protein; lysine exporter protein LysE/YggA 4136231..4136854 Dickeya zeae Ech1591 8117480 YP_003005937.1 CDS Dd1591_3650 NC_012912.1 4136956 4138236 R PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2480 ABC transporter permease; major facilitator superfamily protein complement(4136956..4138236) Dickeya zeae Ech1591 8117481 YP_003005938.1 CDS Dd1591_3651 NC_012912.1 4138247 4139185 R hypothetical protein complement(4138247..4139185) Dickeya zeae Ech1591 8117482 YP_003005939.1 CDS Dd1591_3652 NC_012912.1 4139182 4139475 R hypothetical protein complement(4139182..4139475) Dickeya zeae Ech1591 8117483 YP_003005940.1 CDS Dd1591_3653 NC_012912.1 4139479 4140714 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rso:RS03119 putative transmembrane protein; monooxygenase FAD-binding complement(4139479..4140714) Dickeya zeae Ech1591 8117484 YP_003005941.1 CDS Dd1591_3654 NC_012912.1 4140719 4142038 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(4140719..4142038) Dickeya zeae Ech1591 8117485 YP_003005942.1 CDS Dd1591_3655 NC_012912.1 4142091 4143431 R KEGG: pfl:PFL_4989 lysine N6-hydroxylase/L-ornithine N5-oxygenase family protein; lysine N6-hydroxylase/L-ornithine N5-oxygenase family protein complement(4142091..4143431) Dickeya zeae Ech1591 8117486 YP_003005943.1 CDS Dd1591_3656 NC_012912.1 4143579 4143947 R KEGG: rso:RS03116 hypothetical protein; hypothetical protein complement(4143579..4143947) Dickeya zeae Ech1591 8117487 YP_003005944.1 CDS Dd1591_3657 NC_012912.1 4144076 4144477 R PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: esa:ESA_03980 hypothetical protein; Rhodanese domain-containing protein complement(4144076..4144477) Dickeya zeae Ech1591 8117488 YP_003005945.1 CDS Dd1591_3658 NC_012912.1 4144490 4145374 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ypi:YpsIP31758_2079 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase fold-3 domain-containing protein complement(4144490..4145374) Dickeya zeae Ech1591 8117489 YP_003005946.1 CDS Dd1591_3659 NC_012912.1 4145387 4146319 R KEGG: esa:ESA_03981 hypothetical protein; hypothetical protein complement(4145387..4146319) Dickeya zeae Ech1591 8117490 YP_003005947.1 CDS Dd1591_3660 NC_012912.1 4146316 4147374 R PFAM: FAD dependent oxidoreductase; KEGG: rso:RS03111 putative oxidoreductase signal peptide protein; FAD dependent oxidoreductase complement(4146316..4147374) Dickeya zeae Ech1591 8117491 YP_003005948.1 CDS Dd1591_3661 NC_012912.1 4147374 4148030 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: rso:RS03110 hypothetical protein; Cupin 2 barrel domain-containing protein complement(4147374..4148030) Dickeya zeae Ech1591 8117492 YP_003005949.1 CDS Dd1591_3662 NC_012912.1 4148040 4149671 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: rso:RS03108 hypothetical protein; amino acid adenylation domain-containing protein complement(4148040..4149671) Dickeya zeae Ech1591 8117493 YP_003005950.1 CDS Dd1591_3663 NC_012912.1 4149689 4150978 R KEGG: rso:RS03107 putative transmembrane protein; putative transmembrane protein complement(4149689..4150978) Dickeya zeae Ech1591 8117494 YP_003005951.1 CDS Dd1591_3664 NC_012912.1 4150966 4151439 R PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RS03106 putative acetyltransferase protein; GCN5-related N-acetyltransferase complement(4150966..4151439) Dickeya zeae Ech1591 8117495 YP_003005952.1 CDS Dd1591_3665 NC_012912.1 4151430 4151891 R KEGG: rso:RS03105 hypothetical protein; hypothetical protein complement(4151430..4151891) Dickeya zeae Ech1591 8117496 YP_003005953.1 CDS Dd1591_3666 NC_012912.1 4151878 4153338 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(4151878..4153338) Dickeya zeae Ech1591 8117497 YP_003005954.1 CDS Dd1591_3667 NC_012912.1 4153934 4154737 R hypothetical protein complement(4153934..4154737) Dickeya zeae Ech1591 8117498 YP_003005955.1 CDS Dd1591_3668 NC_012912.1 4155005 4155607 D KEGG: eca:ECA0829 hypothetical protein; hypothetical protein 4155005..4155607 Dickeya zeae Ech1591 8117499 YP_003005956.1 CDS Dd1591_3669 NC_012912.1 4156219 4157529 R KEGG: efe:EFER_3104 putative 5-methylcytosine restriction system component; putative 5-methylcytosine restriction system component complement(4156219..4157529) Dickeya zeae Ech1591 8117500 YP_003005957.1 CDS Dd1591_3670 NC_012912.1 4157522 4159579 R PFAM: ATPase associated with various cellular activities AAA_5; KEGG: efe:EFER_3105 putative 5-methylcytosine-specific restriction enzyme with GTPase activity; ATPase complement(4157522..4159579) Dickeya zeae Ech1591 8117501 YP_003005958.1 CDS hsdR NC_012912.1 4159901 4163425 D restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R 4159901..4163425 Dickeya zeae Ech1591 8117502 YP_003005959.1 CDS Dd1591_3672 NC_012912.1 4163504 4165105 D PFAM: N-6 DNA methylase; putative RNA methylase; KEGG: maq:Maqu_0031 N-6 DNA methylase; Site-specific DNA-methyltransferase (adenine-specific) 4163504..4165105 Dickeya zeae Ech1591 8117503 YP_003005960.1 CDS Dd1591_3673 NC_012912.1 4165105 4166484 D PFAM: restriction modification system DNA specificity domain; KEGG: stm:STM4524 type I restriction enzyme specificity protein; restriction modification system DNA specificity domain-containing protein 4165105..4166484 Dickeya zeae Ech1591 8117504 YP_003005961.1 CDS Dd1591_3674 NC_012912.1 4166845 4167183 D KEGG: eca:ECA0128 hypothetical protein; hypothetical protein 4166845..4167183 Dickeya zeae Ech1591 8117505 YP_003005962.1 CDS Dd1591_3675 NC_012912.1 4167429 4168823 R KEGG: sbl:Sbal_4387 hypothetical protein; hypothetical protein complement(4167429..4168823) Dickeya zeae Ech1591 8117506 YP_003005963.1 CDS Dd1591_3676 NC_012912.1 4168829 4169677 R PFAM: Pirin domain protein; KEGG: pzu:PHZ_c1158 pirin-related protein; Pirin domain-containing protein complement(4168829..4169677) Dickeya zeae Ech1591 8120674 YP_003005964.1 CDS Dd1591_3677 NC_012912.1 4170009 4170866 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: ara:Arad_4435 transporter; hypothetical protein complement(4170009..4170866) Dickeya zeae Ech1591 8120675 YP_003005965.1 CDS Dd1591_3678 NC_012912.1 4170863 4171039 R hypothetical protein complement(4170863..4171039) Dickeya zeae Ech1591 8120676 YP_003005966.1 CDS Dd1591_3679 NC_012912.1 4171095 4172015 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppw:PputW619_2824 LysR family transcriptional regulator; LysR family transcriptional regulator 4171095..4172015 Dickeya zeae Ech1591 8120677 YP_003005967.1 CDS Dd1591_3680 NC_012912.1 4172124 4172528 R PFAM: PilT protein domain protein; KEGG: eca:ECA2850 putative plasmid protein; PilT protein domain-containing protein complement(4172124..4172528) Dickeya zeae Ech1591 8120678 YP_003005968.1 CDS Dd1591_3681 NC_012912.1 4172528 4172758 R KEGG: eca:ECA2851 putative plasmid protein; putative plasmid protein complement(4172528..4172758) Dickeya zeae Ech1591 8120679 YP_003005969.1 CDS Dd1591_3682 NC_012912.1 4173238 4174311 R PFAM: Patatin; KEGG: eck:EC55989_2255 hypothetical protein; Patatin complement(4173238..4174311) Dickeya zeae Ech1591 8120680 YP_003005970.1 CDS Dd1591_3683 NC_012912.1 4174308 4175213 R KEGG: ecz:ECS88_2093 hypothetical protein; hypothetical protein complement(4174308..4175213) Dickeya zeae Ech1591 8120681 YP_003005971.1 CDS Dd1591_3684 NC_012912.1 4175210 4177594 R KEGG: ecp:ECP_2038 hypothetical protein; hypothetical protein complement(4175210..4177594) Dickeya zeae Ech1591 8120682 YP_003005972.1 CDS Dd1591_3685 NC_012912.1 4177729 4177929 D PFAM: Insertion element protein; KEGG: ecz:ECS88_4707 transposase InsA (ORF1) IS1; Insertion element protein 4177729..4177929 Dickeya zeae Ech1591 8120683 YP_003005973.1 CDS Dd1591_3686 NC_012912.1 4178429 4178557 R hypothetical protein complement(4178429..4178557) Dickeya zeae Ech1591 8120684 YP_003005974.1 CDS Dd1591_3687 NC_012912.1 4178817 4179062 D hypothetical protein 4178817..4179062 Dickeya zeae Ech1591 8120685 YP_003005975.1 CDS Dd1591_3689 NC_012912.1 4180084 4180398 R PFAM: protein of unknown function DUF1219; KEGG: eca:ECA2853 hypothetical protein; hypothetical protein complement(4180084..4180398) Dickeya zeae Ech1591 8120687 YP_003005976.1 CDS Dd1591_3691 NC_012912.1 4180726 4181598 D KEGG: plu:plu4325 hypothetical protein; hypothetical protein 4180726..4181598 Dickeya zeae Ech1591 8120689 YP_003005977.1 CDS Dd1591_3692 NC_012912.1 4181759 4182907 R PFAM: protein of unknown function DUF87; KEGG: pst:PSPTO_4332 hypothetical protein; hypothetical protein complement(4181759..4182907) Dickeya zeae Ech1591 8120690 YP_003005978.1 CDS Dd1591_3693 NC_012912.1 4183041 4184204 R KEGG: pst:PSPTO_4326 hypothetical protein; hypothetical protein complement(4183041..4184204) Dickeya zeae Ech1591 8120691 YP_003005979.1 CDS Dd1591_3694 NC_012912.1 4184435 4184758 R SMART: helix-turn-helix domain protein; KEGG: plu:plu4466 hypothetical protein; XRE family transcriptional regulator complement(4184435..4184758) Dickeya zeae Ech1591 8120692 YP_003005980.1 CDS Dd1591_3695 NC_012912.1 4184742 4185101 R PFAM: protein of unknown function DUF1044; KEGG: plu:plu4467 hypothetical protein; hypothetical protein complement(4184742..4185101) Dickeya zeae Ech1591 8120693 YP_003005981.1 CDS Dd1591_3697 NC_012912.1 4187022 4187225 D PFAM: Prophage CP4-57 regulatory; KEGG: ypg:YpAngola_A1363 AlpA family transcriptional regulator; phage transcriptional regulator AlpA 4187022..4187225 Dickeya zeae Ech1591 8120695 YP_003005982.1 CDS Dd1591_3698 NC_012912.1 4187222 4187758 D KEGG: ypp:YPDSF_2605 prophage protein; prophage protein 4187222..4187758 Dickeya zeae Ech1591 8120696 YP_003005983.1 CDS Dd1591_3699 NC_012912.1 4187751 4189787 D PFAM: P4 alpha zinc-binding domain protein; TOPRIM domain protein; SMART: P4 alpha zinc-binding domain protein; Toprim sub domain protein; KEGG: plu:plu4471 hypothetical protein; P4 alpha zinc-binding domain-containing protein 4187751..4189787 Dickeya zeae Ech1591 8120697 YP_003005984.1 CDS Dd1591_3700 NC_012912.1 4190063 4191397 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: sea:SeAg_B4814 protein HipA; HipA N-terminal domain-containing protein complement(4190063..4191397) Dickeya zeae Ech1591 8120698 YP_003005985.1 CDS Dd1591_3701 NC_012912.1 4191402 4191707 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sea:SeAg_B4813 putative transcriptionl regulator HipB; XRE family transcriptional regulator complement(4191402..4191707) Dickeya zeae Ech1591 8120699 YP_003005986.1 CDS Dd1591_3702 NC_012912.1 4192028 4193284 R PFAM: integrase family protein; KEGG: plu:plu4477 hypothetical protein; integrase family protein complement(4192028..4193284) Dickeya zeae Ech1591 8120700 YP_003005987.1 CDS Dd1591_3703 NC_012912.1 4193827 4194078 D PFAM: Protein of unknown function DUF1778; KEGG: ecf:ECH74115_4726 hypothetical protein; hypothetical protein 4193827..4194078 Dickeya zeae Ech1591 8120701 YP_003005988.1 CDS Dd1591_3704 NC_012912.1 4194069 4194548 D PFAM: GCN5-related N-acetyltransferase; KEGG: ecf:ECH74115_4727 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase 4194069..4194548 Dickeya zeae Ech1591 8120702 YP_003005989.1 CDS Dd1591_3706 NC_012912.1 4195132 4195398 D KEGG: plu:plu4474 hypothetical protein; putative transcriptional regulator Nlp 4195132..4195398 Dickeya zeae Ech1591 8120704 YP_003005990.1 CDS Dd1591_3707 NC_012912.1 4195622 4197667 R PFAM: P4 alpha zinc-binding domain protein; TOPRIM domain protein; SMART: P4 alpha zinc-binding domain protein; Toprim sub domain protein; KEGG: plu:plu4471 hypothetical protein; P4 alpha zinc-binding domain-containing protein complement(4195622..4197667) Dickeya zeae Ech1591 8120705 YP_003005991.1 CDS Dd1591_3708 NC_012912.1 4197660 4198199 R KEGG: ypp:YPDSF_2605 prophage protein; prophage protein complement(4197660..4198199) Dickeya zeae Ech1591 8120706 YP_003005992.1 CDS Dd1591_3709 NC_012912.1 4198196 4198399 R PFAM: Prophage CP4-57 regulatory; KEGG: ypn:YPN_2905 transcriptional regulator; phage transcriptional regulator AlpA complement(4198196..4198399) Dickeya zeae Ech1591 8120707 YP_003005993.1 CDS Dd1591_3710 NC_012912.1 4198399 4199280 R KEGG: plu:plu4470 hypothetical protein; hypothetical protein complement(4198399..4199280) Dickeya zeae Ech1591 8120708 YP_003005994.1 CDS Dd1591_3711 NC_012912.1 4200437 4200559 D hypothetical protein 4200437..4200559 Dickeya zeae Ech1591 8120709 YP_003005995.1 CDS Dd1591_3712 NC_012912.1 4200548 4201207 R KEGG: see:SNSL254_A2838 hypothetical protein; hypothetical protein complement(4200548..4201207) Dickeya zeae Ech1591 8120710 YP_003005996.1 CDS Dd1591_3713 NC_012912.1 4201209 4201595 R KEGG: pmr:PMI0516 hypothetical protein; hypothetical protein complement(4201209..4201595) Dickeya zeae Ech1591 8120711 YP_003005997.1 CDS Dd1591_3714 NC_012912.1 4201588 4202433 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: see:SNSL254_A2836 chromosome partitioning ATPase; Cobyrinic acid ac-diamide synthase complement(4201588..4202433) Dickeya zeae Ech1591 8120712 YP_003005998.1 CDS Dd1591_3715 NC_012912.1 4202692 4202889 D hypothetical protein 4202692..4202889 Dickeya zeae Ech1591 8120713 YP_003005999.1 CDS Dd1591_3717 NC_012912.1 4203430 4204689 R PFAM: integrase family protein; KEGG: see:SNSL254_A4836 integrase; integrase family protein complement(4203430..4204689) Dickeya zeae Ech1591 8120715 YP_003006000.1 CDS Dd1591_3718 NC_012912.1 4205217 4206287 R PFAM: permease YjgP/YjgQ family protein; KEGG: sgl:SG2107 putative transport protein; permease YjgP/YjgQ family protein complement(4205217..4206287) Dickeya zeae Ech1591 8120717 YP_003006001.1 CDS Dd1591_3719 NC_012912.1 4206289 4207401 R PFAM: permease YjgP/YjgQ family protein; KEGG: eca:ECA0405 putative permease; permease YjgP/YjgQ family protein complement(4206289..4207401) Dickeya zeae Ech1591 8120718 YP_003006002.1 CDS Dd1591_3720 NC_012912.1 4207684 4209192 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4207684..4209192 Dickeya zeae Ech1591 8120719 YP_003006003.1 CDS Dd1591_3721 NC_012912.1 4209304 4209753 D binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4209304..4209753 Dickeya zeae Ech1591 8120720 YP_003006004.1 CDS valS NC_012912.1 4209767 4212622 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4209767..4212622 Dickeya zeae Ech1591 8120721 YP_003006005.1 CDS Dd1591_3723 NC_012912.1 4212774 4214393 R PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA0390 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4212774..4214393) Dickeya zeae Ech1591 8120722 YP_003006006.1 CDS Dd1591_3724 NC_012912.1 4214551 4215618 R PFAM: alpha/beta hydrolase fold; KEGG: eca:ECA0389 hypothetical protein; hypothetical protein complement(4214551..4215618) Dickeya zeae Ech1591 8120723 YP_003006007.1 CDS Dd1591_3725 NC_012912.1 4215940 4216422 R PFAM: GCN5-related N-acetyltransferase; KEGG: pzu:PHZ_c0633 acetyltransferase, GNAT family; GCN5-related N-acetyltransferase complement(4215940..4216422) Dickeya zeae Ech1591 8120724 YP_003006008.1 CDS Dd1591_3726 NC_012912.1 4216450 4217037 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: spe:Spro_1454 XRE family transcriptional regulator; XRE family transcriptional regulator complement(4216450..4217037) Dickeya zeae Ech1591 8120725 YP_003006009.1 CDS Dd1591_3727 NC_012912.1 4217315 4217818 D PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0386 putative acetyltransferase; GCN5-related N-acetyltransferase 4217315..4217818 Dickeya zeae Ech1591 8120726 YP_003006010.1 CDS Dd1591_3728 NC_012912.1 4217942 4219369 R KEGG: pfo:Pfl01_2665 hypothetical protein; hypothetical protein complement(4217942..4219369) Dickeya zeae Ech1591 8120727 YP_003006011.1 CDS Dd1591_3729 NC_012912.1 4219573 4220004 R PFAM: protein of unknown function DUF29; KEGG: plu:plu4118 hypothetical protein; hypothetical protein complement(4219573..4220004) Dickeya zeae Ech1591 8120728 YP_003006012.1 CDS Dd1591_3731 NC_012912.1 4220675 4221103 R PFAM: protein of unknown function DUF1260; KEGG: eca:ECA0385 hypothetical protein; hypothetical protein complement(4220675..4221103) Dickeya zeae Ech1591 8120730 YP_003006013.1 CDS Dd1591_3732 NC_012912.1 4221266 4222282 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 4221266..4222282 Dickeya zeae Ech1591 8120731 YP_003006014.1 CDS Dd1591_3733 NC_012912.1 4222378 4223814 R PFAM: glycoside hydrolase family 1; KEGG: vsp:VS_II0097 6-phospho-beta-glucosidase; glycoside hydrolase family 1 complement(4222378..4223814) Dickeya zeae Ech1591 8120732 YP_003006015.1 CDS Dd1591_3734 NC_012912.1 4224036 4224503 R PFAM: conserved hypothetical protein; KEGG: eca:ECA0383 hypothetical protein; hypothetical protein complement(4224036..4224503) Dickeya zeae Ech1591 8120733 YP_003006016.1 CDS pyrB NC_012912.1 4224915 4225850 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 4224915..4225850 Dickeya zeae Ech1591 8120734 YP_003006017.1 CDS Dd1591_3736 NC_012912.1 4225867 4226331 D involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 4225867..4226331 Dickeya zeae Ech1591 8120735 YP_003006018.1 CDS Dd1591_3737 NC_012912.1 4226444 4226830 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: yen:YE3768 hypothetical protein; endoribonuclease L-PSP 4226444..4226830 Dickeya zeae Ech1591 8120736 YP_003006019.1 CDS Dd1591_3738 NC_012912.1 4227041 4227646 R hypothetical protein complement(4227041..4227646) Dickeya zeae Ech1591 8120737 YP_003006020.1 CDS Dd1591_3739 NC_012912.1 4228349 4229689 R PFAM: Amidase; KEGG: bph:Bphy_7768 amidase; Amidase complement(4228349..4229689) Dickeya zeae Ech1591 8120738 YP_003006021.1 CDS Dd1591_3740 NC_012912.1 4229774 4231465 R PFAM: amine oxidase; KEGG: bph:Bphy_7769 amine oxidase; amine oxidase complement(4229774..4231465) Dickeya zeae Ech1591 8120739 YP_003006022.1 CDS Dd1591_3742 NC_012912.1 4231987 4232367 R KEGG: pmy:Pmen_0112 hypothetical protein; hypothetical protein complement(4231987..4232367) Dickeya zeae Ech1591 8120741 YP_003006023.1 CDS Dd1591_3743 NC_012912.1 4232632 4234227 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eta:ETA_23880 putative ATP-binding component of ABC transporter; ABC transporter complement(4232632..4234227) Dickeya zeae Ech1591 8120742 YP_003006024.1 CDS Dd1591_3744 NC_012912.1 4234224 4235039 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eta:ETA_23890 ABC-type dipeptide/oligopeptide/nickel transport systems, permease component; binding-protein-dependent transport systems inner membrane component complement(4234224..4235039) Dickeya zeae Ech1591 8120743 YP_003006025.1 CDS Dd1591_3745 NC_012912.1 4235067 4236011 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eta:ETA_23900 ABC-type dipeptide/oligopeptide/nickel transport systems, permease component; binding-protein-dependent transport systems inner membrane component complement(4235067..4236011) Dickeya zeae Ech1591 8120744 YP_003006026.1 CDS Dd1591_3746 NC_012912.1 4236082 4237623 R PFAM: extracellular solute-binding protein family 5; KEGG: eta:ETA_23910 ABC-type dipeptide transport system, periplasmic component (OphA), DdpA region; extracellular solute-binding protein family 5 complement(4236082..4237623) Dickeya zeae Ech1591 8120745 YP_003006027.1 CDS Dd1591_3747 NC_012912.1 4237698 4238606 R PFAM: homocysteine S-methyltransferase; KEGG: eta:ETA_23920 homocysteine S-methyltransferase family protein; homocysteine S-methyltransferase complement(4237698..4238606) Dickeya zeae Ech1591 8120746 YP_003006028.1 CDS Dd1591_3748 NC_012912.1 4238994 4241132 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4238994..4241132 Dickeya zeae Ech1591 8120747 YP_003006029.1 CDS Dd1591_3749 NC_012912.1 4241231 4241695 D TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: stt:t4485 anaerobic ribonucleotide reductase-activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 4241231..4241695 Dickeya zeae Ech1591 8120748 YP_003006030.1 CDS Dd1591_3750 NC_012912.1 4241762 4242214 R KEGG: eca:ECA0372 hypothetical protein; hypothetical protein complement(4241762..4242214) Dickeya zeae Ech1591 8120749 YP_003006031.1 CDS Dd1591_3751 NC_012912.1 4242498 4243013 R KEGG: ppu:PP_4152 hypothetical protein; hypothetical protein complement(4242498..4243013) Dickeya zeae Ech1591 8120750 YP_003006032.1 CDS Dd1591_3752 NC_012912.1 4243013 4243474 R TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: plu:plu2268 hypothetical protein; DNA binding domain-containing protein, excisionase family complement(4243013..4243474) Dickeya zeae Ech1591 8120751 YP_003006033.1 CDS Dd1591_3754 NC_012912.1 4244043 4245569 R TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: sew:SeSA_A3097 crispr-associated protein, CSE1 family; Cse1 family CRISPR-associated protein complement(4244043..4245569) Dickeya zeae Ech1591 8120753 YP_003006034.1 CDS Dd1591_3755 NC_012912.1 4246304 4247227 D PFAM: PfkB domain protein; KEGG: eca:ECA0364 aminoimidazole riboside kinase; PfkB domain-containing protein 4246304..4247227 Dickeya zeae Ech1591 8117187 YP_003006035.1 CDS Dd1591_3756 NC_012912.1 4247421 4249037 D PFAM: porin LamB type; KEGG: eca:ECA0363 putative sucrose porin; porin LamB type 4247421..4249037 Dickeya zeae Ech1591 8117188 YP_003006036.1 CDS Dd1591_3757 NC_012912.1 4249108 4250478 D TIGRFAM: PTS system, sucrose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PTS system, maltose and glucose-specific subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: eca:ECA0362 PTS system, sucrose-specific IIBC component; PTS system sucrose-specific transporter subunit IIBC 4249108..4250478 Dickeya zeae Ech1591 8117189 YP_003006037.1 CDS Dd1591_3758 NC_012912.1 4250478 4251890 D KEGG: eca:ECA0361 sucrose-6-phosphate hydrolase; TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; sucrose-6-phosphate hydrolase 4250478..4251890 Dickeya zeae Ech1591 8117190 YP_003006038.1 CDS Dd1591_3759 NC_012912.1 4251940 4252959 D KEGG: eca:ECA0360 sucrose operon repressor; TIGRFAM: D-fructose-responsive transcription factor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 4251940..4252959 Dickeya zeae Ech1591 8117191 YP_003006039.1 CDS Dd1591_3760 NC_012912.1 4253486 4253905 R TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: eca:ECA0359 biopolymer transport protein ExbD; TonB system transport protein ExbD complement(4253486..4253905) Dickeya zeae Ech1591 8117192 YP_003006040.1 CDS Dd1591_3761 NC_012912.1 4253910 4254800 R TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: eca:ECA0358 biopolymer transport protein; tonB-system energizer ExbB complement(4253910..4254800) Dickeya zeae Ech1591 8117193 YP_003006041.1 CDS Dd1591_3762 NC_012912.1 4255140 4256333 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 4255140..4256333 Dickeya zeae Ech1591 8117194 YP_003006042.1 CDS Dd1591_3763 NC_012912.1 4256588 4257247 D PFAM: SNARE associated Golgi protein; KEGG: eca:ECA0353 DedA family membrane protein; hypothetical protein 4256588..4257247 Dickeya zeae Ech1591 8117195 YP_003006043.1 CDS Dd1591_3764 NC_012912.1 4257364 4258278 R PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: spe:Spro_4214 AraC family transcriptional regulator; AraC family transcriptional regulator complement(4257364..4258278) Dickeya zeae Ech1591 8117196 YP_003006044.1 CDS Dd1591_3765 NC_012912.1 4258512 4259675 D PFAM: iron-containing alcohol dehydrogenase; KEGG: spe:Spro_4215 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 4258512..4259675 Dickeya zeae Ech1591 8117197 YP_003006045.1 CDS dkgA NC_012912.1 4259934 4260779 D methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 4259934..4260779 Dickeya zeae Ech1591 8117198 YP_003006046.1 CDS Dd1591_3767 NC_012912.1 4260827 4262239 R PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: eca:ECA0347 repressor protein for FtsI; repressor protein for FtsI complement(4260827..4262239) Dickeya zeae Ech1591 8117199 YP_003006047.1 CDS Dd1591_3768 NC_012912.1 4262327 4263064 R KEGG: eca:ECA0346 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(4262327..4263064) Dickeya zeae Ech1591 8117200 YP_003006048.1 CDS Dd1591_3769 NC_012912.1 4263297 4265573 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(4263297..4265573) Dickeya zeae Ech1591 8117201 YP_003006049.1 CDS Dd1591_3770 NC_012912.1 4265843 4266424 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: eca:ECA0337 putative modulator of drug activity B; NAD(P)H dehydrogenase (quinone) 4265843..4266424 Dickeya zeae Ech1591 8117202 YP_003006050.1 CDS Dd1591_3771 NC_012912.1 4266475 4267371 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0336 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4266475..4267371) Dickeya zeae Ech1591 8117203 YP_003006051.1 CDS Dd1591_3772 NC_012912.1 4267384 4269279 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(4267384..4269279) Dickeya zeae Ech1591 8117204 YP_003006052.1 CDS Dd1591_3773 NC_012912.1 4269466 4270047 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA complement(4269466..4270047) Dickeya zeae Ech1591 8117205 YP_003006053.1 CDS Dd1591_3774 NC_012912.1 4270047 4270874 R PFAM: Calcineurin phosphoesterase domain protein; metallophosphoesterase; KEGG: eca:ECA0333 cyclic 3',5'-adenosine monophosphate phosphodiesterase; calcineurin phosphoesterase domain-containing protein complement(4270047..4270874) Dickeya zeae Ech1591 8117206 YP_003006054.1 CDS Dd1591_3775 NC_012912.1 4270988 4271410 R PFAM: protein of unknown function DUF1249; KEGG: spe:Spro_4266 hypothetical protein; hypothetical protein complement(4270988..4271410) Dickeya zeae Ech1591 8117207 YP_003006055.1 CDS nudF NC_012912.1 4271410 4272045 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF complement(4271410..4272045) Dickeya zeae Ech1591 8117208 YP_003006056.1 CDS tolC NC_012912.1 4272467 4273879 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 4272467..4273879 Dickeya zeae Ech1591 8117209 YP_003006057.1 CDS Dd1591_3778 NC_012912.1 4274069 4274833 D PFAM: protein of unknown function DUF1190; KEGG: eca:ECA0329 hypothetical protein; hypothetical protein 4274069..4274833 Dickeya zeae Ech1591 8117210 YP_003006058.1 CDS Dd1591_3779 NC_012912.1 4274845 4276005 D PFAM: glutathionylspermidine synthase; KEGG: eca:ECA0328 putative glutathionylspermidine synthase; glutathionylspermidine synthase 4274845..4276005 Dickeya zeae Ech1591 8117211 YP_003006059.1 CDS Dd1591_3780 NC_012912.1 4276075 4276863 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein complement(4276075..4276863) Dickeya zeae Ech1591 8117212 YP_003006060.1 CDS Dd1591_3781 NC_012912.1 4277443 4278330 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: eca:ECA0323 putative tetrapyrrole methylase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(4277443..4278330) Dickeya zeae Ech1591 8117214 YP_003006061.1 CDS Dd1591_3782 NC_012912.1 4278390 4280438 D PFAM: LppC family lipoprotein; KEGG: eca:ECA0322 hypothetical protein; LppC family lipoprotein 4278390..4280438 Dickeya zeae Ech1591 8117215 YP_003006062.1 CDS Dd1591_3783 NC_012912.1 4280435 4280791 D PFAM: protein of unknown function UPF0102; KEGG: ypi:YpsIP31758_0474 hypothetical protein; hypothetical protein 4280435..4280791 Dickeya zeae Ech1591 8117216 YP_003006063.1 CDS Dd1591_3784 NC_012912.1 4280829 4281419 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 4280829..4281419 Dickeya zeae Ech1591 8117217 YP_003006064.1 CDS Dd1591_3785 NC_012912.1 4281430 4282005 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: eca:ECA0319 hypothetical protein; hypothetical protein 4281430..4282005 Dickeya zeae Ech1591 8117218 YP_003006065.1 CDS Dd1591_3786 NC_012912.1 4282138 4283442 R KEGG: eca:ECA0318 hypothetical protein; hypothetical protein complement(4282138..4283442) Dickeya zeae Ech1591 8117219 YP_003006066.1 CDS mtgA NC_012912.1 4283537 4284286 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(4283537..4284286) Dickeya zeae Ech1591 8117220 YP_003006067.1 CDS Dd1591_3788 NC_012912.1 4284283 4284936 R PFAM: ThiJ/PfpI domain protein; KEGG: eca:ECA0316 isoprenoid biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain complement(4284283..4284936) Dickeya zeae Ech1591 8117221 YP_003006068.1 CDS Dd1591_3789 NC_012912.1 4285173 4287512 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(4285173..4287512) Dickeya zeae Ech1591 8117222 YP_003006069.1 CDS Dd1591_3790 NC_012912.1 4287606 4288550 R KEGG: eca:ECA0313 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein complement(4287606..4288550) Dickeya zeae Ech1591 8117223 YP_003006070.1 CDS gltB NC_012912.1 4289251 4293711 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 4289251..4293711 Dickeya zeae Ech1591 8117224 YP_003006071.1 CDS gltD NC_012912.1 4293721 4295139 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 4293721..4295139 Dickeya zeae Ech1591 8117225 YP_003006072.1 CDS Dd1591_3793 NC_012912.1 4295410 4296603 R PFAM: transposase IS4 family protein; KEGG: sfx:S4808 hypothetical protein; transposase IS4 family protein complement(4295410..4296603) Dickeya zeae Ech1591 8117226 YP_003006073.1 CDS Dd1591_3794 NC_012912.1 4297297 4297800 R PFAM: Stringent starvation protein B; KEGG: efe:EFER_3198 ClpXP protease specificity-enhancing factor; Stringent starvation protein B complement(4297297..4297800) Dickeya zeae Ech1591 8117227 YP_003006074.1 CDS sspA NC_012912.1 4297805 4298446 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(4297805..4298446) Dickeya zeae Ech1591 8117228 YP_003006075.1 CDS Dd1591_3796 NC_012912.1 4298772 4299164 R PFAM: ribosomal protein S9; KEGG: eca:ECA0307 30S ribosomal protein S9; 30S ribosomal protein S9 complement(4298772..4299164) Dickeya zeae Ech1591 8117229 YP_003006076.1 CDS rplM NC_012912.1 4299180 4299608 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4299180..4299608) Dickeya zeae Ech1591 8117230 YP_003006077.1 CDS Dd1591_3798 NC_012912.1 4299873 4301003 R PFAM: AFG1-family ATPase; KEGG: eca:ECA0305 putative ATP/GTP-binding protein; AFG1-family ATPase complement(4299873..4301003) Dickeya zeae Ech1591 8117231 YP_003006078.1 CDS Dd1591_3799 NC_012912.1 4301216 4301620 D PFAM: protein of unknown function DUF1043; KEGG: eca:ECA0304 cytochrome d ubiquinol oxidase subunit III; cytochrome d ubiquinol oxidase subunit III 4301216..4301620 Dickeya zeae Ech1591 8117232 YP_003006079.1 CDS Dd1591_3800 NC_012912.1 4301855 4303225 D KEGG: eca:ECA0303 exported protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 4301855..4303225 Dickeya zeae Ech1591 8117233 YP_003006080.1 CDS Dd1591_3801 NC_012912.1 4303312 4304376 D KEGG: sgl:SG0212 serine endoprotease; TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; serine endoprotease 4303312..4304376 Dickeya zeae Ech1591 8117234 YP_003006081.1 CDS Dd1591_3802 NC_012912.1 4304432 4305694 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(4304432..4305694) Dickeya zeae Ech1591 8117235 YP_003006082.1 CDS Dd1591_3803 NC_012912.1 4305748 4306002 R PFAM: BolA family protein; KEGG: spe:Spro_4355 BolA family protein; BolA family protein complement(4305748..4306002) Dickeya zeae Ech1591 8117236 YP_003006083.1 CDS Dd1591_3804 NC_012912.1 4306145 4306438 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: yen:YE3748 putative anti-sigma B factor antagonist; anti-sigma-factor antagonist complement(4306145..4306438) Dickeya zeae Ech1591 8117237 YP_003006084.1 CDS Dd1591_3805 NC_012912.1 4306431 4307084 R PFAM: toluene tolerance family protein; KEGG: spe:Spro_4357 toluene tolerance family protein; toluene tolerance family protein complement(4306431..4307084) Dickeya zeae Ech1591 8117238 YP_003006085.1 CDS Dd1591_3806 NC_012912.1 4307096 4307740 R PFAM: Mammalian cell entry related domain protein; KEGG: eca:ECA0297 hypothetical protein; mammalian cell entry related domain-containing protein complement(4307096..4307740) Dickeya zeae Ech1591 8117239 YP_003006086.1 CDS Dd1591_3807 NC_012912.1 4307745 4308527 R PFAM: protein of unknown function DUF140; KEGG: yen:YE3751 hypothetical protein; hypothetical protein complement(4307745..4308527) Dickeya zeae Ech1591 8117240 YP_003006087.1 CDS Dd1591_3808 NC_012912.1 4308531 4309340 R ATP-binding subunit of a putative ABC toluene efflux transporter; putative ABC transporter ATP-binding protein YrbF complement(4308531..4309340) Dickeya zeae Ech1591 8117241 YP_003006088.1 CDS Dd1591_3809 NC_012912.1 4309619 4310581 D YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; putative calcium/sodium:proton antiporter 4309619..4310581 Dickeya zeae Ech1591 8117242 YP_003006089.1 CDS Dd1591_3810 NC_012912.1 4310612 4311598 D KEGG: eca:ECA0293 D-arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; D-arabinose 5-phosphate isomerase 4310612..4311598 Dickeya zeae Ech1591 8117243 YP_003006090.1 CDS Dd1591_3811 NC_012912.1 4311646 4312212 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4311646..4312212 Dickeya zeae Ech1591 8117244 YP_003006091.1 CDS Dd1591_3812 NC_012912.1 4312209 4312778 D PFAM: protein of unknown function DUF1239; KEGG: spe:Spro_4364 hypothetical protein; hypothetical protein 4312209..4312778 Dickeya zeae Ech1591 8117245 YP_003006092.1 CDS Dd1591_3813 NC_012912.1 4312756 4313325 D TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: efe:EFER_3177 putative lipopolysaccharide transport protein A: periplasmic-binding component of ABC superfamily; lipopolysaccharide transport periplasmic protein LptA 4312756..4313325 Dickeya zeae Ech1591 8117246 YP_003006093.1 CDS Dd1591_3814 NC_012912.1 4313341 4314066 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA0289 putative ABC transporter ATP-binding protein YhbG; putative ABC transporter ATP-binding protein YhbG 4313341..4314066 Dickeya zeae Ech1591 8117247 YP_003006094.1 CDS Dd1591_3815 NC_012912.1 4314115 4315548 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4314115..4315548 Dickeya zeae Ech1591 8117248 YP_003006095.1 CDS Dd1591_3816 NC_012912.1 4315573 4315860 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: yen:YE3760 putative sigma(54) modulation protein; sigma 54 modulation protein/ribosomal protein S30EA 4315573..4315860 Dickeya zeae Ech1591 8117249 YP_003006096.1 CDS Dd1591_3817 NC_012912.1 4315950 4316438 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: eca:ECA0286 sugar-specific enzyme IIA component of PTS; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 4315950..4316438 Dickeya zeae Ech1591 8117250 YP_003006097.1 CDS Dd1591_3818 NC_012912.1 4316630 4317484 D PFAM: conserved hypothetical protein; KEGG: eta:ETA_03120 conserved hypothetical protein YhbJ; hypothetical protein 4316630..4317484 Dickeya zeae Ech1591 8117251 YP_003006098.1 CDS Dd1591_3819 NC_012912.1 4317481 4317753 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: eca:ECA0284 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 4317481..4317753 Dickeya zeae Ech1591 8117252 YP_003006099.1 CDS Dd1591_3820 NC_012912.1 4317932 4318342 D Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 4317932..4318342 Dickeya zeae Ech1591 8117253 YP_003006100.1 CDS Dd1591_3821 NC_012912.1 4318417 4319757 R protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase pmbA complement(4318417..4319757) Dickeya zeae Ech1591 8117254 YP_003006101.1 CDS Dd1591_3822 NC_012912.1 4319948 4320496 D PFAM: protein of unknown function DUF615; KEGG: eca:ECA0281 hypothetical protein; hypothetical protein 4319948..4320496 Dickeya zeae Ech1591 8117255 YP_003006102.1 CDS Dd1591_3823 NC_012912.1 4320496 4320594 D hypothetical protein 4320496..4320594 Dickeya zeae Ech1591 8117256 YP_003006103.1 CDS Dd1591_3824 NC_012912.1 4320591 4321091 D PFAM: protein of unknown function DUF1543; KEGG: sgl:SG0708 hypothetical protein; hypothetical protein 4320591..4321091 Dickeya zeae Ech1591 8117257 YP_003006104.1 CDS Dd1591_3825 NC_012912.1 4321098 4323047 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB complement(4321098..4323047) Dickeya zeae Ech1591 8117258 YP_003006105.1 CDS Dd1591_3826 NC_012912.1 4323061 4324008 R with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA complement(4323061..4324008) Dickeya zeae Ech1591 8117259 YP_003006106.1 CDS Dd1591_3827 NC_012912.1 4324016 4324219 R membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein complement(4324016..4324219) Dickeya zeae Ech1591 8117260 YP_003006107.1 CDS Dd1591_3828 NC_012912.1 4324555 4325499 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0276 putative DNA-binding transcriptional regulator; putative DNA-binding transcriptional regulator 4324555..4325499 Dickeya zeae Ech1591 8117261 YP_003006108.1 CDS tldD NC_012912.1 4325545 4326990 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD complement(4325545..4326990) Dickeya zeae Ech1591 8117262 YP_003006109.1 CDS Dd1591_3830 NC_012912.1 4327037 4330891 R KEGG: eca:ECA0272 hypothetical protein; hypothetical protein complement(4327037..4330891) Dickeya zeae Ech1591 8117263 YP_003006110.1 CDS Dd1591_3831 NC_012912.1 4330983 4332452 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(4330983..4332452) Dickeya zeae Ech1591 8117264 YP_003006111.1 CDS Dd1591_3832 NC_012912.1 4332442 4333035 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ypi:YpsIP31758_0401 Maf-like protein; maf protein complement(4332442..4333035) Dickeya zeae Ech1591 8117265 YP_003006112.1 CDS Dd1591_3833 NC_012912.1 4333060 4333548 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(4333060..4333548) Dickeya zeae Ech1591 8117266 YP_003006113.1 CDS Dd1591_3834 NC_012912.1 4333545 4334696 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4333545..4334696) Dickeya zeae Ech1591 8118787 YP_003006114.1 CDS Dd1591_3835 NC_012912.1 4334798 4335841 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4334798..4335841) Dickeya zeae Ech1591 8118788 YP_003006115.1 CDS Dd1591_3836 NC_012912.1 4336156 4338102 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(4336156..4338102) Dickeya zeae Ech1591 8118789 YP_003006116.1 CDS Dd1591_3837 NC_012912.1 4338255 4339241 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eca:ECA0265 putative zinc-binding oxidoreductase; quinone oxidoreductase, YhdH/YhfP family 4338255..4339241 Dickeya zeae Ech1591 8118790 YP_003006117.1 CDS Dd1591_3838 NC_012912.1 4339427 4340428 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 4339427..4340428 Dickeya zeae Ech1591 8118791 YP_003006118.1 CDS Dd1591_3839 NC_012912.1 4340511 4341110 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 4340511..4341110 Dickeya zeae Ech1591 8118792 YP_003006119.1 CDS Dd1591_3840 NC_012912.1 4341350 4341802 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 4341350..4341802 Dickeya zeae Ech1591 8118793 YP_003006120.1 CDS Dd1591_3841 NC_012912.1 4341838 4342305 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: eca:ECA0261 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; acetyl-CoA carboxylase, biotin carboxyl carrier protein 4341838..4342305 Dickeya zeae Ech1591 8118794 YP_003006121.1 CDS Dd1591_3842 NC_012912.1 4342317 4343660 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: eca:ECA0260 acetyl-CoA carboxylase biotin carboxylase subunit; acetyl-CoA carboxylase, biotin carboxylase 4342317..4343660 Dickeya zeae Ech1591 8118795 YP_003006122.1 CDS Dd1591_3843 NC_012912.1 4343855 4344097 D PFAM: protein of unknown function DUF997; KEGG: esa:ESA_03646 hypothetical protein; hypothetical protein 4343855..4344097 Dickeya zeae Ech1591 8118796 YP_003006123.1 CDS panF NC_012912.1 4344087 4345538 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 4344087..4345538 Dickeya zeae Ech1591 8118797 YP_003006124.1 CDS prmA NC_012912.1 4345553 4346440 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 4345553..4346440 Dickeya zeae Ech1591 8118798 YP_003006125.1 CDS Dd1591_3846 NC_012912.1 4346772 4347737 D TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: eca:ECA0256 tRNA-dihydrouridine synthase B; tRNA-dihydrouridine synthase B 4346772..4347737 Dickeya zeae Ech1591 8118799 YP_003006126.1 CDS fis NC_012912.1 4347761 4348057 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 4347761..4348057 Dickeya zeae Ech1591 8118800 YP_003006127.1 CDS Dd1591_3848 NC_012912.1 4348225 4349277 R PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: yen:YE3722 NADP-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein complement(4348225..4349277) Dickeya zeae Ech1591 8118801 YP_003006128.1 CDS Dd1591_3849 NC_012912.1 4349293 4349541 R KEGG: ade:Adeh_3217 short-chain dehydrogenase/reductase SDR; hypothetical protein complement(4349293..4349541) Dickeya zeae Ech1591 8118802 YP_003006129.1 CDS Dd1591_3850 NC_012912.1 4349541 4349936 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: spe:Spro_3098 cupin 2 domain-containing protein; Cupin 2 barrel domain-containing protein complement(4349541..4349936) Dickeya zeae Ech1591 8118803 YP_003006130.1 CDS Dd1591_3851 NC_012912.1 4350213 4351106 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA3134 LysR family transcriptional regulator; LysR family transcriptional regulator 4350213..4351106 Dickeya zeae Ech1591 8118804 YP_003006131.1 CDS Dd1591_3852 NC_012912.1 4351107 4352330 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ara:Arad_7425 drug transporter protein; Bcr/CflA subfamily drug resistance transporter complement(4351107..4352330) Dickeya zeae Ech1591 8118805 YP_003006132.1 CDS Dd1591_3853 NC_012912.1 4352330 4352434 R hypothetical protein complement(4352330..4352434) Dickeya zeae Ech1591 8118806 YP_003006133.1 CDS Dd1591_3854 NC_012912.1 4352635 4353777 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: eca:ECA0251 endonuclease/exonuclease/phosphatase family protein; Endonuclease/exonuclease/phosphatase complement(4352635..4353777) Dickeya zeae Ech1591 8118807 YP_003006134.1 CDS Dd1591_3855 NC_012912.1 4354028 4354798 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA0247 putative cystine-binding periplasmic protein; extracellular solute-binding protein family 3 4354028..4354798 Dickeya zeae Ech1591 8118808 YP_003006135.1 CDS Dd1591_3856 NC_012912.1 4354826 4355491 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0246 putative amino-acid transport system permease protein; polar amino acid ABC transporter permease 4354826..4355491 Dickeya zeae Ech1591 8118809 YP_003006136.1 CDS Dd1591_3857 NC_012912.1 4356014 4357045 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA0245 general L-amino ABC transporter binding protein; extracellular solute-binding protein family 3 4356014..4357045 Dickeya zeae Ech1591 8118810 YP_003006137.1 CDS Dd1591_3858 NC_012912.1 4357118 4358296 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0244 L-amino acid ABC transporter permease protein; polar amino acid ABC transporter permease 4357118..4358296 Dickeya zeae Ech1591 8118811 YP_003006138.1 CDS Dd1591_3859 NC_012912.1 4358306 4359400 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0243 L-amino acid ABC transporter permease protein; polar amino acid ABC transporter permease 4358306..4359400 Dickeya zeae Ech1591 8118812 YP_003006139.1 CDS Dd1591_3860 NC_012912.1 4359409 4360170 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA0242 L-amino acid ABC transporter ATP-binding protein; ABC transporter 4359409..4360170 Dickeya zeae Ech1591 8118813 YP_003006140.1 CDS purH NC_012912.1 4366117 4367706 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4366117..4367706 Dickeya zeae Ech1591 8118818 YP_003006141.1 CDS Dd1591_3862 NC_012912.1 4367722 4369011 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4367722..4369011 Dickeya zeae Ech1591 8118819 YP_003006142.1 CDS Dd1591_3863 NC_012912.1 4369100 4369810 R PFAM: protein of unknown function DUF1481; KEGG: eca:ECA0239 putative lipoprotein; hypothetical protein complement(4369100..4369810) Dickeya zeae Ech1591 8118820 YP_003006143.1 CDS Dd1591_3864 NC_012912.1 4369815 4370087 R histone-like DNA-binding protein; transcriptional regulator HU subunit alpha complement(4369815..4370087) Dickeya zeae Ech1591 8118821 YP_003006144.1 CDS Dd1591_3865 NC_012912.1 4370275 4370865 R PFAM: protein of unknown function DUF416; KEGG: eca:ECA0237 putative lipoprotein; hypothetical protein complement(4370275..4370865) Dickeya zeae Ech1591 8118822 YP_003006145.1 CDS Dd1591_3866 NC_012912.1 4370957 4371631 R Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V complement(4370957..4371631) Dickeya zeae Ech1591 8118823 YP_003006146.1 CDS hemE NC_012912.1 4371631 4372704 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(4371631..4372704) Dickeya zeae Ech1591 8118824 YP_003006147.1 CDS nudC NC_012912.1 4372760 4373533 R can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase complement(4372760..4373533) Dickeya zeae Ech1591 8118825 YP_003006148.1 CDS Dd1591_3869 NC_012912.1 4373686 4374135 D binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4373686..4374135 Dickeya zeae Ech1591 8118826 YP_003006149.1 CDS Dd1591_3870 NC_012912.1 4374449 4376416 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4374449..4376416 Dickeya zeae Ech1591 8118827 YP_003006150.1 CDS Dd1591_3871 NC_012912.1 4376416 4377051 D catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4376416..4377051 Dickeya zeae Ech1591 8118828 YP_003006151.1 CDS Dd1591_3872 NC_012912.1 4377053 4377802 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: spe:Spro_0282 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 4377053..4377802 Dickeya zeae Ech1591 8118829 YP_003006152.1 CDS Dd1591_3873 NC_012912.1 4377799 4377999 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: eca:ECA0229A sulfur carrier protein ThiS; thiamine biosynthesis protein ThiS 4377799..4377999 Dickeya zeae Ech1591 8118830 YP_003006153.1 CDS thiG NC_012912.1 4378001 4378780 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4378001..4378780 Dickeya zeae Ech1591 8118831 YP_003006154.1 CDS thiH NC_012912.1 4378780 4379925 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 4378780..4379925 Dickeya zeae Ech1591 8118832 YP_003006155.1 CDS Dd1591_3876 NC_012912.1 4380068 4381498 R PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: eta:ETA_01690 putative GntR-family transcriptional regulator; GntR family transcriptional regulator complement(4380068..4381498) Dickeya zeae Ech1591 8118833 YP_003006156.1 CDS Dd1591_3877 NC_012912.1 4381495 4381638 R hypothetical protein complement(4381495..4381638) Dickeya zeae Ech1591 8118834 YP_003006157.1 CDS Dd1591_3878 NC_012912.1 4381663 4381854 D PFAM: protein of unknown function DUF1127; KEGG: ecl:EcolC_3722 hypothetical protein; hypothetical protein 4381663..4381854 Dickeya zeae Ech1591 8118835 YP_003006158.1 CDS Dd1591_3879 NC_012912.1 4382114 4382296 D PFAM: protein of unknown function DUF1127; KEGG: ecr:ECIAI1_4560 hypothetical protein; hypothetical protein 4382114..4382296 Dickeya zeae Ech1591 8118836 YP_003006159.1 CDS Dd1591_3880 NC_012912.1 4382374 4382496 R hypothetical protein complement(4382374..4382496) Dickeya zeae Ech1591 8118837 YP_003006160.1 CDS Dd1591_3881 NC_012912.1 4382564 4383670 R PFAM: protein of unknown function DUF1176; KEGG: bur:Bcep18194_B2472 hypothetical protein; hypothetical protein complement(4382564..4383670) Dickeya zeae Ech1591 8118838 YP_003006161.1 CDS Dd1591_3882 NC_012912.1 4383799 4384896 R PFAM: protein of unknown function DUF1176; KEGG: ent:Ent638_2961 hypothetical protein; hypothetical protein complement(4383799..4384896) Dickeya zeae Ech1591 8118839 YP_003006162.1 CDS Dd1591_3883 NC_012912.1 4384940 4385197 R hypothetical protein complement(4384940..4385197) Dickeya zeae Ech1591 8118840 YP_003006163.1 CDS Dd1591_3884 NC_012912.1 4385819 4390042 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(4385819..4390042) Dickeya zeae Ech1591 8118841 YP_003006164.1 CDS rpoB NC_012912.1 4390147 4394175 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(4390147..4394175) Dickeya zeae Ech1591 8118842 YP_003006165.1 CDS Dd1591_3886 NC_012912.1 4394500 4394865 R TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: ent:Ent638_0196 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(4394500..4394865) Dickeya zeae Ech1591 8118843 YP_003006166.1 CDS rplJ NC_012912.1 4394932 4395429 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(4394932..4395429) Dickeya zeae Ech1591 8118844 YP_003006167.1 CDS Dd1591_3888 NC_012912.1 4395766 4396470 R TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: kpn:KPN_04361 50S ribosomal protein L1; 50S ribosomal protein L1 complement(4395766..4396470) Dickeya zeae Ech1591 8118845 YP_003006168.1 CDS Dd1591_3889 NC_012912.1 4396474 4396902 R KEGG: kpe:KPK_5313 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 complement(4396474..4396902) Dickeya zeae Ech1591 8118846 YP_003006169.1 CDS nusG NC_012912.1 4397050 4397595 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(4397050..4397595) Dickeya zeae Ech1591 8118847 YP_003006170.1 CDS secE NC_012912.1 4397597 4397980 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(4397597..4397980) Dickeya zeae Ech1591 8118848 YP_003006171.1 CDS Dd1591_3892 NC_012912.1 4398216 4399400 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4398216..4399400) Dickeya zeae Ech1591 8118849 YP_003006172.1 CDS Dd1591_3893 NC_012912.1 4400259 4400417 R hypothetical protein complement(4400259..4400417) Dickeya zeae Ech1591 8118854 YP_003006173.1 CDS Dd1591_3894 NC_012912.1 4400814 4401764 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4400814..4401764 Dickeya zeae Ech1591 8118855 YP_003006174.1 CDS Dd1591_3895 NC_012912.1 4401797 4402756 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(4401797..4402756) Dickeya zeae Ech1591 8118856 YP_003006175.1 CDS Dd1591_3896 NC_012912.1 4402753 4403790 R KEGG: elf:LF82_1416 hypothetical protein; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(4402753..4403790) Dickeya zeae Ech1591 8118857 YP_003006176.1 CDS hemG NC_012912.1 4409451 4409990 R catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase complement(4409451..4409990) Dickeya zeae Ech1591 8118862 YP_003006177.1 CDS Dd1591_3898 NC_012912.1 4410012 4411463 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: yen:YE0272 potassium transporter; potassium transporter complement(4410012..4411463) Dickeya zeae Ech1591 8118863 YP_003006178.1 CDS Dd1591_3899 NC_012912.1 4411504 4412118 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: eca:ECA0210 hypothetical protein; hypothetical protein complement(4411504..4412118) Dickeya zeae Ech1591 8118864 YP_003006179.1 CDS Dd1591_3900 NC_012912.1 4412118 4413449 R catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase complement(4412118..4413449) Dickeya zeae Ech1591 8118865 YP_003006180.1 CDS fadB NC_012912.1 4413631 4415820 D includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4413631..4415820 Dickeya zeae Ech1591 8118866 YP_003006181.1 CDS fadA NC_012912.1 4415833 4416996 D FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4415833..4416996 Dickeya zeae Ech1591 8117507 YP_003006182.1 CDS Dd1591_3903 NC_012912.1 4417042 4417470 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ppf:Pput_2447 protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(4417042..4417470) Dickeya zeae Ech1591 8117508 YP_003006183.1 CDS Dd1591_3904 NC_012912.1 4417505 4417921 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: spe:Spro_1878 protein of unknown function DUF395 YeeE/YedE; hypothetical protein complement(4417505..4417921) Dickeya zeae Ech1591 8117509 YP_003006184.1 CDS fre NC_012912.1 4418366 4419067 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(4418366..4419067) Dickeya zeae Ech1591 8117510 YP_003006185.1 CDS Dd1591_3906 NC_012912.1 4419117 4420613 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: eca:ECA0205 3-octaprenyl-4-hydroxybenzoate decarboxylase; UbiD family decarboxylase complement(4419117..4420613) Dickeya zeae Ech1591 8117511 YP_003006186.1 CDS rfaH NC_012912.1 4420814 4421302 D KEGG: spe:Spro_0256 transcriptional activator RfaH; TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; SMART: NGN domain protein; transcriptional activator RfaH 4420814..4421302 Dickeya zeae Ech1591 8117512 YP_003006187.1 CDS Dd1591_3908 NC_012912.1 4421335 4422357 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(4421335..4422357) Dickeya zeae Ech1591 8117513 YP_003006188.1 CDS Dd1591_3909 NC_012912.1 4422360 4423154 R magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD complement(4422360..4423154) Dickeya zeae Ech1591 8117514 YP_003006189.1 CDS Dd1591_3910 NC_012912.1 4423266 4424033 R with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC complement(4423266..4424033) Dickeya zeae Ech1591 8117515 YP_003006190.1 CDS Dd1591_3911 NC_012912.1 4424037 4424609 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: spe:Spro_0252 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein, TatB subunit complement(4424037..4424609) Dickeya zeae Ech1591 8117516 YP_003006191.1 CDS Dd1591_3912 NC_012912.1 4424613 4424867 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: eca:ECA0199 sec-independent protein translocase; twin-arginine translocation protein, TatA/E family subunit complement(4424613..4424867) Dickeya zeae Ech1591 8117517 YP_003006192.1 CDS ubiB NC_012912.1 4424965 4426602 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB complement(4424965..4426602) Dickeya zeae Ech1591 8117518 YP_003006193.1 CDS Dd1591_3914 NC_012912.1 4426599 4427207 R PFAM: Sterol-binding domain protein; KEGG: eca:ECA0197 hypothetical protein; Sterol-binding domain-containing protein complement(4426599..4427207) Dickeya zeae Ech1591 8117519 YP_003006194.1 CDS Dd1591_3915 NC_012912.1 4427221 4427976 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: eca:ECA0196 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(4427221..4427976) Dickeya zeae Ech1591 8117520 YP_003006195.1 CDS Dd1591_3916 NC_012912.1 4428111 4429652 R PFAM: protein of unknown function DUF195; KEGG: eca:ECA0195 DNA recombination protein; hypothetical protein complement(4428111..4429652) Dickeya zeae Ech1591 8117521 YP_003006196.1 CDS Dd1591_3917 NC_012912.1 4429843 4431216 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(4429843..4431216) Dickeya zeae Ech1591 8117522 YP_003006197.1 CDS Dd1591_3918 NC_012912.1 4431334 4432107 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(4431334..4432107) Dickeya zeae Ech1591 8117523 YP_003006198.1 CDS argC NC_012912.1 4432132 4433136 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(4432132..4433136) Dickeya zeae Ech1591 8117524 YP_003006199.1 CDS Dd1591_3920 NC_012912.1 4433351 4434502 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4433351..4434502 Dickeya zeae Ech1591 8117525 YP_003006200.1 CDS Dd1591_3921 NC_012912.1 4434572 4437136 R KEGG: eca:ECA2020 hypothetical protein; hypothetical protein complement(4434572..4437136) Dickeya zeae Ech1591 8117526 YP_003006201.1 CDS Dd1591_3922 NC_012912.1 4437152 4439554 R KEGG: eca:ECA2019 hypothetical protein; hypothetical protein complement(4437152..4439554) Dickeya zeae Ech1591 8117527 YP_003006202.1 CDS Dd1591_3923 NC_012912.1 4439687 4439830 R hypothetical protein complement(4439687..4439830) Dickeya zeae Ech1591 8117528 YP_003006203.1 CDS Dd1591_3924 NC_012912.1 4439960 4440154 D hypothetical protein 4439960..4440154 Dickeya zeae Ech1591 8117529 YP_003006204.1 CDS Dd1591_3925 NC_012912.1 4440209 4441342 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: hypothetical protein; UBA/THIF-type NAD/FAD binding protein 4440209..4441342 Dickeya zeae Ech1591 8117530 YP_003006205.1 CDS Dd1591_3926 NC_012912.1 4441335 4442429 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pmr:PMI2779 thiamine biosynthesis adenylyltransferase; UBA/THIF-type NAD/FAD binding protein 4441335..4442429 Dickeya zeae Ech1591 8117531 YP_003006206.1 CDS Dd1591_3927 NC_012912.1 4442410 4444545 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: asu:Asuc_1634 ABC transporter related; ABC transporter 4442410..4444545 Dickeya zeae Ech1591 8117532 YP_003006207.1 CDS Dd1591_3928 NC_012912.1 4444841 4447480 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4444841..4447480 Dickeya zeae Ech1591 8117533 YP_003006208.1 CDS Dd1591_3929 NC_012912.1 4447698 4448270 R hypothetical protein complement(4447698..4448270) Dickeya zeae Ech1591 8117534 YP_003006209.1 CDS Dd1591_3930 NC_012912.1 4448277 4448801 R KEGG: vei:Veis_1323 hypothetical protein; hypothetical protein complement(4448277..4448801) Dickeya zeae Ech1591 8117535 YP_003006210.1 CDS Dd1591_3931 NC_012912.1 4449129 4449911 R KEGG: eca:ECA0186 hypothetical protein; protein tyrosine/serine phosphatase complement(4449129..4449911) Dickeya zeae Ech1591 8117536 YP_003006211.1 CDS Dd1591_3932 NC_012912.1 4450156 4450917 R catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase complement(4450156..4450917) Dickeya zeae Ech1591 8117537 YP_003006212.1 CDS Dd1591_3933 NC_012912.1 4451242 4452069 D PFAM: dienelactone hydrolase; KEGG: eca:ECA0184 putative carboxymethylenebutenolidase; carboxymethylenebutenolidase 4451242..4452069 Dickeya zeae Ech1591 8117538 YP_003006213.1 CDS Dd1591_3934 NC_012912.1 4452660 4454930 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(4452660..4454930) Dickeya zeae Ech1591 8117539 YP_003006214.1 CDS Dd1591_3935 NC_012912.1 4455035 4455973 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0180 transcriptional activator protein; LysR family transcriptional regulator 4455035..4455973 Dickeya zeae Ech1591 8117540 YP_003006215.1 CDS Dd1591_3936 NC_012912.1 4455876 4456832 R TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA0179 hypothetical protein; carboxylate/amino acid/amine transporter complement(4455876..4456832) Dickeya zeae Ech1591 8117541 YP_003006216.1 CDS Dd1591_3937 NC_012912.1 4456905 4457492 R PFAM: Antimicrobial peptide resistance and lipid A acylation PagP; KEGG: eca:ECA0175 palmitoyl transferase for lipid A; antimicrobial peptide resistance and lipid a acylation PagP complement(4456905..4457492) Dickeya zeae Ech1591 8117542 YP_003006217.1 CDS cysE NC_012912.1 4457848 4458669 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(4457848..4458669) Dickeya zeae Ech1591 8117543 YP_003006218.1 CDS gpsA NC_012912.1 4459014 4460033 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4459014..4460033) Dickeya zeae Ech1591 8117544 YP_003006219.1 CDS Dd1591_3940 NC_012912.1 4460033 4460572 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(4460033..4460572) Dickeya zeae Ech1591 8117545 YP_003006220.1 CDS Dd1591_3941 NC_012912.1 4460603 4461034 R PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: eca:ECA0171 putative rhodanese-related sulfurtransferase; Rhodanese domain-containing protein complement(4460603..4461034) Dickeya zeae Ech1591 8117546 YP_003006221.1 CDS Dd1591_3942 NC_012912.1 4461272 4462546 D PFAM: Peptidase M23; KEGG: eca:ECA0170 hypothetical protein; hypothetical protein 4461272..4462546 Dickeya zeae Ech1591 8117547 YP_003006222.1 CDS Dd1591_3943 NC_012912.1 4462549 4463478 D PFAM: protein of unknown function DUF610 YibQ; KEGG: eca:ECA0169 hypothetical protein; hypothetical protein 4462549..4463478 Dickeya zeae Ech1591 8117548 YP_003006223.1 CDS Dd1591_3944 NC_012912.1 4463515 4464543 R TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: pmr:PMI3178 L-threonine 3-dehydrogenase; L-threonine 3-dehydrogenase complement(4463515..4464543) Dickeya zeae Ech1591 8117549 YP_003006224.1 CDS Dd1591_3945 NC_012912.1 4464551 4465747 R KEGG: eca:ECA0167 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; 2-amino-3-ketobutyrate coenzyme A ligase complement(4464551..4465747) Dickeya zeae Ech1591 8117550 YP_003006225.1 CDS rfaD NC_012912.1 4466027 4466959 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-mannoheptose-6-epimerase 4466027..4466959 Dickeya zeae Ech1591 8117551 YP_003006226.1 CDS Dd1591_3947 NC_012912.1 4466990 4468042 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose:LPS heptosyltransferase II 4466990..4468042 Dickeya zeae Ech1591 8117552 YP_003006227.1 CDS Dd1591_3948 NC_012912.1 4468039 4469010 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: eca:ECA0163 ADP-heptose:LPS heptosyl transferase I; ADP-heptose:LPS heptosyl transferase I 4468039..4469010 Dickeya zeae Ech1591 8117553 YP_003006228.1 CDS Dd1591_3949 NC_012912.1 4469022 4470107 D TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: glycosyl transferase family 9; KEGG: dar:Daro_0152 lipopolysaccharide heptosyltransferase III, putative; lipopolysaccharide heptosyltransferase III 4469022..4470107 Dickeya zeae Ech1591 8117554 YP_003006229.1 CDS Dd1591_3950 NC_012912.1 4470104 4471222 D PFAM: glycosyl transferase group 1; KEGG: eta:ETA_00760 glycosyl transferase, group 1; glycosyl transferase group 1 4470104..4471222 Dickeya zeae Ech1591 8117555 YP_003006230.1 CDS Dd1591_3951 NC_012912.1 4471300 4472508 R PFAM: O-antigen polymerase; KEGG: hch:HCH_01051 O-antigen polymerase; O-antigen polymerase complement(4471300..4472508) Dickeya zeae Ech1591 8117556 YP_003006231.1 CDS Dd1591_3952 NC_012912.1 4472508 4473614 R PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3288 putative lipopolysaccharide core biosynthesis glycosyltransferase protein; glycosyl transferase family 9 complement(4472508..4473614) Dickeya zeae Ech1591 8117557 YP_003006232.1 CDS Dd1591_3953 NC_012912.1 4473611 4474735 R PFAM: glycosyl transferase group 1; KEGG: plu:plu4862 WalR protein; glycosyl transferase group 1 complement(4473611..4474735) Dickeya zeae Ech1591 8117558 YP_003006233.1 CDS Dd1591_3954 NC_012912.1 4475278 4476561 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 4475278..4476561 Dickeya zeae Ech1591 8117559 YP_003006234.1 CDS Dd1591_3955 NC_012912.1 4476561 4477352 D PFAM: glycosyl transferase family 2; KEGG: yen:YE0068 lipopolysaccharide core biosynthesis glycosyl transferase; glycosyl transferase family 2 4476561..4477352 Dickeya zeae Ech1591 8117560 YP_003006235.1 CDS coaD NC_012912.1 4477342 4477821 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 4477342..4477821 Dickeya zeae Ech1591 8117561 YP_003006236.1 CDS Dd1591_3957 NC_012912.1 4477869 4478678 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(4477869..4478678) Dickeya zeae Ech1591 8117562 YP_003006237.1 CDS Dd1591_3958 NC_012912.1 4478781 4478948 R TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: yps:YPTB0048 50S ribosomal protein L33; 50S ribosomal protein L33 complement(4478781..4478948) Dickeya zeae Ech1591 8117563 YP_003006238.1 CDS rpmB NC_012912.1 4478960 4479196 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(4478960..4479196) Dickeya zeae Ech1591 8117564 YP_003006239.1 CDS radC NC_012912.1 4479435 4480100 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(4479435..4480100) Dickeya zeae Ech1591 8117565 YP_003006240.1 CDS Dd1591_3961 NC_012912.1 4480429 4481685 D KEGG: spe:Spro_4843 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 4480429..4481685 Dickeya zeae Ech1591 8117566 YP_003006241.1 CDS Dd1591_3962 NC_012912.1 4481654 4482112 D TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: eca:ECA0143 deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 4481654..4482112 Dickeya zeae Ech1591 8117567 YP_003006242.1 CDS slmA NC_012912.1 4482220 4482816 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4482220..4482816 Dickeya zeae Ech1591 8117568 YP_003006243.1 CDS Dd1591_3964 NC_012912.1 4482864 4483505 R KEGG: eca:ECA0141 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase complement(4482864..4483505) Dickeya zeae Ech1591 8117569 YP_003006244.1 CDS Dd1591_3965 NC_012912.1 4483590 4484306 R KEGG: eca:ECA0140 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH complement(4483590..4484306) Dickeya zeae Ech1591 8117570 YP_003006245.1 CDS Dd1591_3966 NC_012912.1 4484486 4484878 D PFAM: protein of unknown function DUF202; KEGG: eca:ECA3000 hypothetical protein; hypothetical protein 4484486..4484878 Dickeya zeae Ech1591 8117571 YP_003006246.1 CDS Dd1591_3967 NC_012912.1 4484885 4485217 D KEGG: eca:ECA3001 hypothetical protein; hypothetical protein 4484885..4485217 Dickeya zeae Ech1591 8117572 YP_003006247.1 CDS Dd1591_3968 NC_012912.1 4485473 4486480 D PFAM: protein of unknown function DUF1611; KEGG: ppr:PBPRA1897 hypothetical protein; hypothetical protein 4485473..4486480 Dickeya zeae Ech1591 8117573 YP_003006248.1 CDS Dd1591_3969 NC_012912.1 4486485 4487450 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA0139 putative mandelate racemase / muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing protein 4486485..4487450 Dickeya zeae Ech1591 8117574 YP_003006249.1 CDS Dd1591_3970 NC_012912.1 4487471 4489393 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: eca:ECA0138 ABC transporter ATP-binding protein; ABC transporter 4487471..4489393 Dickeya zeae Ech1591 8117575 YP_003006250.1 CDS Dd1591_3971 NC_012912.1 4489567 4491123 D PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA0137 ABC transporter periplasmic binding protein; extracellular solute-binding protein family 5 4489567..4491123 Dickeya zeae Ech1591 8117576 YP_003006251.1 CDS Dd1591_3972 NC_012912.1 4491141 4492061 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0136 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 4491141..4492061 Dickeya zeae Ech1591 8117577 YP_003006252.1 CDS Dd1591_3973 NC_012912.1 4492070 4492972 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0135 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 4492070..4492972 Dickeya zeae Ech1591 8117578 YP_003006253.1 CDS Dd1591_3974 NC_012912.1 4492984 4494039 D PFAM: peptidase S58 DmpA; KEGG: eca:ECA0134 putative peptidase; peptidase S58 DmpA 4492984..4494039 Dickeya zeae Ech1591 8117579 YP_003006254.1 CDS Dd1591_3975 NC_012912.1 4494071 4494892 D PFAM: peptidase M55 D-aminopeptidase; KEGG: eca:ECA0133 hypothetical protein; peptidase M55 D-aminopeptidase 4494071..4494892 Dickeya zeae Ech1591 8117580 YP_003006255.1 CDS Dd1591_3976 NC_012912.1 4494923 4495885 D PFAM: peptidase T2 asparaginase 2; KEGG: eca:ECA0132 L-asparaginase; peptidase T2 asparaginase 2 4494923..4495885 Dickeya zeae Ech1591 8117581 YP_003006256.1 CDS Dd1591_3977 NC_012912.1 4496129 4496608 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA0176 hypothetical protein; Hcp1 family type VI secretion system effector 4496129..4496608 Dickeya zeae Ech1591 8117582 YP_003006257.1 CDS Dd1591_3978 NC_012912.1 4496618 4497322 D KEGG: eca:ECA0177 hypothetical protein; hypothetical protein 4496618..4497322 Dickeya zeae Ech1591 8117583 YP_003006258.1 CDS Dd1591_3979 NC_012912.1 4497324 4497629 D KEGG: eta:ETA_34450 hypothetical protein; hypothetical protein 4497324..4497629 Dickeya zeae Ech1591 8117584 YP_003006259.1 CDS Dd1591_3980 NC_012912.1 4497745 4499007 R PFAM: secretion protein HlyD family protein; KEGG: esa:ESA_01116 hypothetical protein; secretion protein HlyD family protein complement(4497745..4499007) Dickeya zeae Ech1591 8117585 YP_003006260.1 CDS Dd1591_3981 NC_012912.1 4499000 4500481 R PFAM: outer membrane efflux protein; KEGG: plu:plu2646 hypothetical protein; outer membrane efflux protein complement(4499000..4500481) Dickeya zeae Ech1591 8117586 YP_003006261.1 CDS Dd1591_3982 NC_012912.1 4500474 4501694 R PFAM: protein of unknown function DUF214; KEGG: plu:plu2647 hypothetical protein; hypothetical protein complement(4500474..4501694) Dickeya zeae Ech1591 8119581 YP_003006262.1 CDS Dd1591_3983 NC_012912.1 4501687 4502388 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppw:PputW619_0892 ABC transporter related; ABC transporter complement(4501687..4502388) Dickeya zeae Ech1591 8119582 YP_003006263.1 CDS Dd1591_3984 NC_012912.1 4502666 4503427 R KEGG: ent:Ent638_0389 hypothetical protein; hypothetical protein complement(4502666..4503427) Dickeya zeae Ech1591 8119583 YP_003006264.1 CDS Dd1591_3985 NC_012912.1 4503447 4504208 R KEGG: ent:Ent638_0389 hypothetical protein; hypothetical protein complement(4503447..4504208) Dickeya zeae Ech1591 8119584 YP_003006265.1 CDS Dd1591_3986 NC_012912.1 4504227 4504991 R KEGG: ent:Ent638_0389 hypothetical protein; hypothetical protein complement(4504227..4504991) Dickeya zeae Ech1591 8119585 YP_003006266.1 CDS Dd1591_3987 NC_012912.1 4505115 4505585 R KEGG: plu:plu2640 hypothetical protein; hypothetical protein complement(4505115..4505585) Dickeya zeae Ech1591 8119586 YP_003006267.1 CDS Dd1591_3988 NC_012912.1 4505999 4507510 R PFAM: beta-lactamase; KEGG: spe:Spro_2075 beta-lactamase; beta-lactamase complement(4505999..4507510) Dickeya zeae Ech1591 8119587 YP_003006268.1 CDS Dd1591_3989 NC_012912.1 4507507 4508247 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_4567 oligopeptide transport ATP-binding protein AppF; ABC transporter complement(4507507..4508247) Dickeya zeae Ech1591 8119588 YP_003006269.1 CDS Dd1591_3990 NC_012912.1 4508260 4509090 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_4569 dipeptide transporter DppD homolog; ABC transporter complement(4508260..4509090) Dickeya zeae Ech1591 8119589 YP_003006270.1 CDS Dd1591_3991 NC_012912.1 4509091 4509993 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3739 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4509091..4509993) Dickeya zeae Ech1591 8119590 YP_003006271.1 CDS Dd1591_3992 NC_012912.1 4509990 4511000 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3740 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4509990..4511000) Dickeya zeae Ech1591 8119591 YP_003006272.1 CDS Dd1591_3993 NC_012912.1 4511000 4512595 R PFAM: extracellular solute-binding protein family 5; KEGG: atc:AGR_C_4574 putative hemin-binding lipoprotein; extracellular solute-binding protein family 5 complement(4511000..4512595) Dickeya zeae Ech1591 8119592 YP_003006273.1 CDS Dd1591_3994 NC_012912.1 4512796 4513878 D PFAM: peptidase M19 renal dipeptidase; KEGG: atc:AGR_C_4575 membrane dipeptidase homolog; Membrane dipeptidase 4512796..4513878 Dickeya zeae Ech1591 8119593 YP_003006274.1 CDS Dd1591_3995 NC_012912.1 4514007 4514915 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA0131 LysR family transcriptional regulator; LysR family transcriptional regulator 4514007..4514915 Dickeya zeae Ech1591 8119594 YP_003006275.1 CDS Dd1591_3996 NC_012912.1 4515046 4515909 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: eca:ECA0130 hypothetical protein; hypothetical protein 4515046..4515909 Dickeya zeae Ech1591 8119595 YP_003006276.1 CDS Dd1591_3997 NC_012912.1 4516098 4517357 D PFAM: integrase family protein; KEGG: sbo:SBO_3647 putative integrase; integrase family protein 4516098..4517357 Dickeya zeae Ech1591 8119596 YP_003006277.1 CDS Dd1591_3998 NC_012912.1 4517727 4518239 D KEGG: eca:ECA2751 putative phage-related protein; putative phage-related protein 4517727..4518239 Dickeya zeae Ech1591 8119597 YP_003006278.1 CDS Dd1591_3999 NC_012912.1 4518339 4518560 D PFAM: Prophage CP4-57 regulatory; KEGG: sbc:SbBS512_E4074 prophage CP4-57 transcriptional regulator protein, AlpA family; phage transcriptional regulator AlpA 4518339..4518560 Dickeya zeae Ech1591 8119598 YP_003006279.1 CDS Dd1591_4000 NC_012912.1 4518557 4519003 D KEGG: eta:ETA_24300 hypothetical protein; hypothetical protein 4518557..4519003 Dickeya zeae Ech1591 8119599 YP_003006280.1 CDS Dd1591_4001 NC_012912.1 4519018 4519860 D PFAM: AntA/AntB antirepressor domain protein; KEGG: eta:ETA_24290 putative phage anti-repressor protein; AntA/AntB antirepressor domain-containing protein 4519018..4519860 Dickeya zeae Ech1591 8119600 YP_003006281.1 CDS Dd1591_4003 NC_012912.1 4520405 4520593 D KEGG: eca:ECA0668 hypothetical protein; hypothetical protein 4520405..4520593 Dickeya zeae Ech1591 8119602 YP_003006282.1 CDS Dd1591_4004 NC_012912.1 4520586 4520759 D hypothetical protein 4520586..4520759 Dickeya zeae Ech1591 8119603 YP_003006283.1 CDS Dd1591_4005 NC_012912.1 4520752 4520970 D KEGG: eck:EC55989_0275 hypothetical protein; hypothetical protein 4520752..4520970 Dickeya zeae Ech1591 8119604 YP_003006284.1 CDS Dd1591_4006 NC_012912.1 4520967 4521596 D KEGG: eta:ETA_24230 conserved hypothetical protein, related to bacteriophage P27; hypothetical protein 4520967..4521596 Dickeya zeae Ech1591 8119605 YP_003006285.1 CDS Dd1591_4007 NC_012912.1 4521607 4524306 D PFAM: protein of unknown function DUF927; P4 alpha zinc-binding domain protein; SMART: P4 alpha zinc-binding domain protein; KEGG: eta:ETA_24220 putative prophage primase; hypothetical protein 4521607..4524306 Dickeya zeae Ech1591 8119606 YP_003006286.1 CDS Dd1591_4008 NC_012912.1 4524766 4524954 D KEGG: ecg:E2348C_3896 hypothetical protein; hypothetical protein 4524766..4524954 Dickeya zeae Ech1591 8119607 YP_003006287.1 CDS Dd1591_4009 NC_012912.1 4524938 4526584 D KEGG: ypi:YpsIP31758_2206 lysozyme; hypothetical protein 4524938..4526584 Dickeya zeae Ech1591 8119608 YP_003006288.1 CDS Dd1591_4010 NC_012912.1 4526663 4527400 D KEGG: eck:EC55989_2615 putative terminase small subunit; hypothetical protein 4526663..4527400 Dickeya zeae Ech1591 8119609 YP_003006289.1 CDS Dd1591_4011 NC_012912.1 4527476 4528801 R PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_05087 hypothetical protein; transposase IS4 family protein complement(4527476..4528801) Dickeya zeae Ech1591 8119610 YP_003006290.1 CDS Dd1591_4012 NC_012912.1 4529076 4530026 D PFAM: Abi family protein; KEGG: eba:ebA5889 hypothetical protein; Abi family protein 4529076..4530026 Dickeya zeae Ech1591 8119611 YP_003006291.1 CDS Dd1591_4013 NC_012912.1 4530019 4530225 D hypothetical protein 4530019..4530225 Dickeya zeae Ech1591 8119612 YP_003006292.1 CDS Dd1591_4014 NC_012912.1 4530432 4531757 D PFAM: transposase IS4 family protein; KEGG: vha:VIBHAR_05087 hypothetical protein; transposase IS4 family protein 4530432..4531757 Dickeya zeae Ech1591 8119613 YP_003006293.1 CDS Dd1591_4016 NC_012912.1 4532241 4535543 D KEGG: rlt:Rleg2_3992 hypothetical protein; hypothetical protein 4532241..4535543 Dickeya zeae Ech1591 8119615 YP_003006294.1 CDS Dd1591_4017 NC_012912.1 4535756 4536853 R catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase complement(4535756..4536853) Dickeya zeae Ech1591 8119616 YP_003006295.1 CDS Dd1591_4018 NC_012912.1 4536857 4537741 R TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eca:ECA4274 putative carbon-nitrogen hydrolase; N-carbamoylputrescine amidase complement(4536857..4537741) Dickeya zeae Ech1591 8119617 YP_003006296.1 CDS Dd1591_4019 NC_012912.1 4538056 4539018 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(4538056..4539018) Dickeya zeae Ech1591 8119618 YP_003006297.1 CDS fieF NC_012912.1 4539265 4540167 R member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F complement(4539265..4540167) Dickeya zeae Ech1591 8119619 YP_003006298.1 CDS Dd1591_4021 NC_012912.1 4540296 4540766 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: kpe:KPK_2763 DNA-binding protein; XRE family transcriptional regulator complement(4540296..4540766) Dickeya zeae Ech1591 8119620 YP_003006299.1 CDS Dd1591_4022 NC_012912.1 4540983 4541444 D PFAM: NUDIX hydrolase; KEGG: sea:SeAg_B4799 NUDIX hydrolase; NUDIX hydrolase 4540983..4541444 Dickeya zeae Ech1591 8119621 YP_003006300.1 CDS Dd1591_4023 NC_012912.1 4541434 4541829 R PFAM: tail assembly chaperone gp38; KEGG: eum:ECUMN_0911 hypothetical protein; putative phage tail fiber assembly protein; tail assembly chaperone gp38 complement(4541434..4541829) Dickeya zeae Ech1591 8119622 YP_003006301.1 CDS Dd1591_4024 NC_012912.1 4541826 4543184 R KEGG: ecz:ECS88_2817 putative variable tail fiber protein; Phage-related tail fiber protein-like protein complement(4541826..4543184) Dickeya zeae Ech1591 8119623 YP_003006302.1 CDS Dd1591_4025 NC_012912.1 4543727 4544842 R PFAM: Tail Collar domain protein; KEGG: eta:ETA_05860 putative phage tail fiber protein; Tail Collar domain-containing protein complement(4543727..4544842) Dickeya zeae Ech1591 8119624 YP_003006303.1 CDS Dd1591_4026 NC_012912.1 4545131 4545751 R PFAM: tail assembly chaperone gp38; KEGG: plu:plu3024 hypothetical protein; tail assembly chaperone gp38 complement(4545131..4545751) Dickeya zeae Ech1591 8119625 YP_003006304.1 CDS Dd1591_4027 NC_012912.1 4545751 4547691 R PFAM: Tail Collar domain protein; KEGG: eca:ECA2608 bacteriophage variable tail fiber protein H; Tail Collar domain-containing protein complement(4545751..4547691) Dickeya zeae Ech1591 8119626 YP_003006305.1 CDS Dd1591_4028 NC_012912.1 4547949 4548326 R KEGG: sfv:SFV_0255 putative phage tail fibre protein; putative phage tail fiber protein complement(4547949..4548326) Dickeya zeae Ech1591 8119627 YP_003006306.1 CDS Dd1591_4029 NC_012912.1 4548335 4549594 R KEGG: eca:ECA2608 bacteriophage variable tail fiber protein H; Phage-related tail fiber protein-like protein complement(4548335..4549594) Dickeya zeae Ech1591 8119628 YP_003006307.1 CDS Dd1591_4030 NC_012912.1 4549850 4550227 R KEGG: sfv:SFV_0255 putative phage tail fibre protein; putative phage tail fiber protein complement(4549850..4550227) Dickeya zeae Ech1591 8119629 YP_003006308.1 CDS Dd1591_4031 NC_012912.1 4550657 4552114 R PFAM: Tail Collar domain protein; KEGG: eca:ECA2608 bacteriophage variable tail fiber protein H; Tail Collar domain-containing protein complement(4550657..4552114) Dickeya zeae Ech1591 8119630 YP_003006309.1 CDS Dd1591_4032 NC_012912.1 4552499 4553071 R KEGG: eca:ECA4310 putative stress resistance protein; putative stress resistance protein complement(4552499..4553071) Dickeya zeae Ech1591 8119631 YP_003006310.1 CDS Dd1591_4033 NC_012912.1 4553248 4553946 D response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4553248..4553946 Dickeya zeae Ech1591 8119632 YP_003006311.1 CDS cpxA NC_012912.1 4553963 4555333 D part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4553963..4555333 Dickeya zeae Ech1591 8119633 YP_003006312.1 CDS Dd1591_4035 NC_012912.1 4555567 4557756 D KEGG: eca:ECA4313 hypothetical protein; hypothetical protein 4555567..4557756 Dickeya zeae Ech1591 8119634 YP_003006313.1 CDS Dd1591_4036 NC_012912.1 4557726 4558499 D KEGG: eca:ECA4314 hypothetical protein; hypothetical protein 4557726..4558499 Dickeya zeae Ech1591 8119635 YP_003006314.1 CDS Dd1591_4037 NC_012912.1 4558516 4559055 R KEGG: bam:Bamb_5223 hypothetical protein; hypothetical protein complement(4558516..4559055) Dickeya zeae Ech1591 8119636 YP_003006315.1 CDS Dd1591_4038 NC_012912.1 4559105 4559569 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: eca:ECA4315 putative RNA-methyltransferase; tRNA/rRNA methyltransferase (SpoU) complement(4559105..4559569) Dickeya zeae Ech1591 8119637 YP_003006316.1 CDS Dd1591_4039 NC_012912.1 4559698 4559979 D KEGG: eca:ECA4316 hypothetical protein; hypothetical protein 4559698..4559979 Dickeya zeae Ech1591 8119638 YP_003006317.1 CDS Dd1591_4040 NC_012912.1 4560051 4561007 R PFAM: Auxin Efflux Carrier; KEGG: eca:ECA4317 putative transporter; auxin efflux carrier complement(4560051..4561007) Dickeya zeae Ech1591 8119639 YP_003006318.1 CDS ugpQ NC_012912.1 4561192 4561935 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; cytoplasmic glycerophosphodiester phosphodiesterase complement(4561192..4561935) Dickeya zeae Ech1591 8119640 YP_003006319.1 CDS ugpC NC_012912.1 4561932 4563008 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(4561932..4563008) Dickeya zeae Ech1591 8119641 YP_003006320.1 CDS Dd1591_4043 NC_012912.1 4563015 4563863 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein complement(4563015..4563863) Dickeya zeae Ech1591 8119642 YP_003006321.1 CDS Dd1591_4044 NC_012912.1 4563890 4564777 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease complement(4563890..4564777) Dickeya zeae Ech1591 8119643 YP_003006322.1 CDS Dd1591_4045 NC_012912.1 4564866 4566185 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein complement(4564866..4566185) Dickeya zeae Ech1591 8119644 YP_003006323.1 CDS Dd1591_4046 NC_012912.1 4567092 4568774 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: eca:ECA4332 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4567092..4568774 Dickeya zeae Ech1591 8119645 YP_003006324.1 CDS Dd1591_4047 NC_012912.1 4569198 4570877 D PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: eca:ECA4335 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4569198..4570877 Dickeya zeae Ech1591 8119646 YP_003006325.1 CDS Dd1591_4048 NC_012912.1 4571332 4572960 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: eca:ECA4335 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4571332..4572960 Dickeya zeae Ech1591 8119647 YP_003006326.1 CDS Dd1591_4049 NC_012912.1 4573246 4573719 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: plu:plu0404 hypothetical protein; Hcp1 family type VI secretion system effector 4573246..4573719 Dickeya zeae Ech1591 8119648 YP_003006327.1 CDS Dd1591_4050 NC_012912.1 4573912 4574313 R KEGG: sek:SSPA2223 probable secreted protein; hypothetical protein complement(4573912..4574313) Dickeya zeae Ech1591 8119649 YP_003006328.1 CDS Dd1591_4051 NC_012912.1 4574310 4575113 R PFAM: Peptidoglycan-binding domain 1 protein; glycoside hydrolase family 24; KEGG: btr:Btr_0306 phage-related lysozyme; peptidoglycan-binding domain 1 protein complement(4574310..4575113) Dickeya zeae Ech1591 8119650 YP_003006329.1 CDS Dd1591_4052 NC_012912.1 4575434 4576339 R KEGG: rru:Rru_A0564 hypothetical protein; hypothetical protein complement(4575434..4576339) Dickeya zeae Ech1591 8119651 YP_003006330.1 CDS Dd1591_4053 NC_012912.1 4577034 4578671 D PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: aav:Aave_4495 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4577034..4578671 Dickeya zeae Ech1591 8119652 YP_003006331.1 CDS Dd1591_4054 NC_012912.1 4578751 4579935 R PFAM: aminotransferase class I and II; KEGG: eca:ECA4336 putative aminotransferase; GntR family transcriptional regulator complement(4578751..4579935) Dickeya zeae Ech1591 8119653 YP_003006332.1 CDS livF NC_012912.1 4580022 4580723 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(4580022..4580723) Dickeya zeae Ech1591 8119654 YP_003006333.1 CDS livG NC_012912.1 4580730 4581500 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(4580730..4581500) Dickeya zeae Ech1591 8119655 YP_003006334.1 CDS livM NC_012912.1 4581497 4582771 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(4581497..4582771) Dickeya zeae Ech1591 8119656 YP_003006335.1 CDS Dd1591_4058 NC_012912.1 4582768 4583694 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH complement(4582768..4583694) Dickeya zeae Ech1591 8119657 YP_003006336.1 CDS Dd1591_4059 NC_012912.1 4583773 4584885 R PFAM: Extracellular ligand-binding receptor; KEGG: eca:ECA4341 leucine-specific binding protein; Extracellular ligand-binding receptor complement(4583773..4584885) Dickeya zeae Ech1591 8119658 YP_003006337.1 CDS Dd1591_4060 NC_012912.1 4585289 4585708 D PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA4342 putative acetyltransferase; GCN5-related N-acetyltransferase 4585289..4585708 Dickeya zeae Ech1591 8119659 YP_003006338.1 CDS Dd1591_4061 NC_012912.1 4585730 4585858 D hypothetical protein 4585730..4585858 Dickeya zeae Ech1591 8119660 YP_003006339.1 CDS Dd1591_4062 NC_012912.1 4585845 4586702 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4585845..4586702) Dickeya zeae Ech1591 8120914 YP_003006340.1 CDS ftsX NC_012912.1 4587079 4588044 R putative ABC transporter, membrane protein; cell division protein FtsX complement(4587079..4588044) Dickeya zeae Ech1591 8120915 YP_003006341.1 CDS Dd1591_4064 NC_012912.1 4588034 4588702 R KEGG: sgl:SG0085 cell division protein FtsE; TIGRFAM: Type II (General) Secretory Pathway (IISP) Family protein; cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; Type II (general) Secretory Pathway (IISP) Family protein complement(4588034..4588702) Dickeya zeae Ech1591 8120916 YP_003006342.1 CDS Dd1591_4065 NC_012912.1 4588708 4590066 R KEGG: eca:ECA4346 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(4588708..4590066) Dickeya zeae Ech1591 8120917 YP_003006343.1 CDS rsmD NC_012912.1 4590365 4590988 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 4590365..4590988 Dickeya zeae Ech1591 8120918 YP_003006344.1 CDS Dd1591_4067 NC_012912.1 4590972 4591259 D PFAM: protein of unknown function DUF1145; KEGG: eca:ECA4348 hypothetical protein; hypothetical protein 4590972..4591259 Dickeya zeae Ech1591 8120919 YP_003006345.1 CDS Dd1591_4068 NC_012912.1 4591335 4591661 R PFAM: Domain of unknown function DUF1820; KEGG: eca:ECA4350 hypothetical protein; hypothetical protein complement(4591335..4591661) Dickeya zeae Ech1591 8120920 YP_003006346.1 CDS Dd1591_4069 NC_012912.1 4592080 4592325 R PFAM: SirA family protein; KEGG: eca:ECA4353 cell developmental protein SirA; SirA family protein complement(4592080..4592325) Dickeya zeae Ech1591 8120921 YP_003006347.1 CDS Dd1591_4070 NC_012912.1 4592681 4593349 D TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: eca:ECA4354 hypothetical protein; hypothetical protein 4592681..4593349 Dickeya zeae Ech1591 8120922 YP_003006348.1 CDS Dd1591_4071 NC_012912.1 4593554 4594117 D KEGG: eca:ECA4355 hypothetical protein; hypothetical protein 4593554..4594117 Dickeya zeae Ech1591 8120923 YP_003006349.1 CDS Dd1591_4072 NC_012912.1 4594176 4595393 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4358 hypothetical protein; major facilitator superfamily transporter complement(4594176..4595393) Dickeya zeae Ech1591 8120924 YP_003006350.1 CDS Dd1591_4073 NC_012912.1 4595576 4596562 D TIGRFAM: ribonuclease; PFAM: ribonuclease BN; KEGG: eca:ECA4359 hypothetical protein; ribonuclease 4595576..4596562 Dickeya zeae Ech1591 8120925 YP_003006351.1 CDS Dd1591_4074 NC_012912.1 4596594 4596797 D TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: yps:YPTB3829 tautomerase enzyme; 4-oxalocrotonate tautomerase family protein 4596594..4596797 Dickeya zeae Ech1591 8120926 YP_003006352.1 CDS Dd1591_4075 NC_012912.1 4596980 4597912 D PFAM: PfkB domain protein; KEGG: eca:ECA4360 2-dehydro-3-deoxygluconokinase; PfkB domain-containing protein 4596980..4597912 Dickeya zeae Ech1591 8120927 YP_003006353.1 CDS Dd1591_4076 NC_012912.1 4598358 4599383 D KEGG: ecm:EcSMS35_4765 hypothetical protein; hypothetical protein 4598358..4599383 Dickeya zeae Ech1591 8120928 YP_003006354.1 CDS Dd1591_4077 NC_012912.1 4599613 4601070 R PFAM: peptidase M16 domain protein; KEGG: eca:ECA4361 putative peptidase; peptidase M16 domain-containing protein complement(4599613..4601070) Dickeya zeae Ech1591 8120929 YP_003006355.1 CDS Dd1591_4078 NC_012912.1 4601545 4602831 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(4601545..4602831) Dickeya zeae Ech1591 8120930 YP_003006356.1 CDS Dd1591_4079 NC_012912.1 4603248 4604246 R PFAM: glycoside hydrolase family 8; KEGG: eta:ETA_33880 minor endoglucanase Y precursor (endo-1,4-beta-glucanase Y); Cellulase complement(4603248..4604246) Dickeya zeae Ech1591 8120931 YP_003006357.1 CDS Dd1591_4080 NC_012912.1 4604261 4604728 R KEGG: eta:ETA_33890 cellulose synthase operon protein D; cellulose synthase operon protein D complement(4604261..4604728) Dickeya zeae Ech1591 8120932 YP_003006358.1 CDS Dd1591_4081 NC_012912.1 4604731 4608660 R PFAM: cellulose synthase operon C domain protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: eta:ETA_33900 cellulose synthase operon protein C; cellulose synthase operon C domain-containing protein complement(4604731..4608660) Dickeya zeae Ech1591 8120933 YP_003006359.1 CDS Dd1591_4082 NC_012912.1 4608672 4611212 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein complement(4608672..4611212) Dickeya zeae Ech1591 8120934 YP_003006360.1 CDS Dd1591_4083 NC_012912.1 4611209 4613299 R TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; KEGG: eta:ETA_33920 cellulose synthase, cellulose synthase operon protein A; cellulose synthase catalytic subunit complement(4611209..4613299) Dickeya zeae Ech1591 8120935 YP_003006361.1 CDS Dd1591_4084 NC_012912.1 4613408 4614223 R TIGRFAM: cellulose synthase operon protein YhjQ; KEGG: ent:Ent638_3941 hypothetical protein; cellulose synthase operon protein YhjQ complement(4613408..4614223) Dickeya zeae Ech1591 8120936 YP_003006362.1 CDS Dd1591_4085 NC_012912.1 4614214 4614819 R KEGG: eta:ETA_33940 hypothetical protein; hypothetical protein complement(4614214..4614819) Dickeya zeae Ech1591 8120937 YP_003006363.1 CDS Dd1591_4087 NC_012912.1 4615861 4616049 D KEGG: spe:Spro_4310 helix-turn-helix domain-containing protein; helix-turn-helix domain-containing protein 4615861..4616049 Dickeya zeae Ech1591 8120939 YP_003006364.1 CDS Dd1591_4088 NC_012912.1 4616046 4616890 R KEGG: plu:plu4519 IS427 family transposase; transposase and inactivated derivatives-like protein complement(join(4616046..4616540,4616540..4616890)) Dickeya zeae Ech1591 8120940 YP_003006365.1 CDS Dd1591_4089 NC_012912.1 4616959 4617057 D hypothetical protein 4616959..4617057 Dickeya zeae Ech1591 8120941 YP_003006366.1 CDS Dd1591_4090 NC_012912.1 4617050 4617172 D KEGG: spe:Spro_4311 HipA domain-containing protein; hypothetical protein 4617050..4617172 Dickeya zeae Ech1591 8120942 YP_003006367.1 CDS Dd1591_4091 NC_012912.1 4617492 4618178 D KEGG: yps:YPTB1848 hypothetical protein; hypothetical protein 4617492..4618178 Dickeya zeae Ech1591 8120943 YP_003006368.1 CDS Dd1591_4092 NC_012912.1 4618178 4618366 D hypothetical protein 4618178..4618366 Dickeya zeae Ech1591 8120944 YP_003006369.1 CDS Dd1591_4093 NC_012912.1 4618386 4618865 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: eca:ECA1069 hypothetical protein; Hcp1 family type VI secretion system effector complement(4618386..4618865) Dickeya zeae Ech1591 8120945 YP_003006370.1 CDS dppF NC_012912.1 4619177 4620184 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(4619177..4620184) Dickeya zeae Ech1591 8120946 YP_003006371.1 CDS dppD NC_012912.1 4620181 4621161 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit complement(4620181..4621161) Dickeya zeae Ech1591 8120947 YP_003006372.1 CDS Dd1591_4096 NC_012912.1 4621190 4622092 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4392 dipeptide transporter; dipeptide transporter complement(4621190..4622092) Dickeya zeae Ech1591 8120948 YP_003006373.1 CDS Dd1591_4097 NC_012912.1 4622106 4623125 R transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB complement(4622106..4623125) Dickeya zeae Ech1591 8120949 YP_003006374.1 CDS Dd1591_4098 NC_012912.1 4623351 4624958 R PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA4394 periplasmic dipeptide transport protein; extracellular solute-binding protein family 5 complement(4623351..4624958) Dickeya zeae Ech1591 8120950 YP_003006375.1 CDS Dd1591_4099 NC_012912.1 4626221 4627672 D PFAM: Citrate carrier protein; KEGG: eca:ECA4395 Na(+)-malate symporter; Citrate carrier protein 4626221..4627672 Dickeya zeae Ech1591 8120951 YP_003006376.1 CDS Dd1591_4100 NC_012912.1 4628142 4629494 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: bvi:Bcep1808_7013 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 4628142..4629494 Dickeya zeae Ech1591 8120952 YP_003006377.1 CDS Dd1591_4101 NC_012912.1 4629642 4630364 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR complement(4629642..4630364) Dickeya zeae Ech1591 8120953 YP_003006378.1 CDS Dd1591_4102 NC_012912.1 4630377 4631990 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4630377..4631990) Dickeya zeae Ech1591 8120954 YP_003006379.1 CDS Dd1591_4103 NC_012912.1 4632121 4633533 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: eca:ECA4400 putative sodium:sulfate symporter; anion transporter complement(4632121..4633533) Dickeya zeae Ech1591 8120955 YP_003006380.1 CDS Dd1591_4104 NC_012912.1 4634237 4634686 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB complement(4634237..4634686) Dickeya zeae Ech1591 8120956 YP_003006381.1 CDS Dd1591_4105 NC_012912.1 4634842 4635255 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(4634842..4635255) Dickeya zeae Ech1591 8120957 YP_003006382.1 CDS Dd1591_4106 NC_012912.1 4635577 4635948 D PFAM: protein of unknown function DUF1375; KEGG: eca:ECA4404 hypothetical protein; hypothetical protein 4635577..4635948 Dickeya zeae Ech1591 8120958 YP_003006383.1 CDS Dd1591_4107 NC_012912.1 4636082 4637425 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sed:SeD_A0233 major facilitator family transporter; general substrate transporter complement(4636082..4637425) Dickeya zeae Ech1591 8120959 YP_003006384.1 CDS Dd1591_4109 NC_012912.1 4637693 4638976 R KEGG: eca:ECA4405 hypothetical protein; hypothetical protein complement(4637693..4638976) Dickeya zeae Ech1591 8120961 YP_003006385.1 CDS Dd1591_4110 NC_012912.1 4639212 4639469 D PFAM: protein of unknown function DUF1471; KEGG: eca:ECA4406 hypothetical protein; hypothetical protein 4639212..4639469 Dickeya zeae Ech1591 8120962 YP_003006386.1 CDS Dd1591_4111 NC_012912.1 4639556 4640251 R PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: csa:Csal_1739 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4639556..4640251) Dickeya zeae Ech1591 8120963 YP_003006387.1 CDS Dd1591_4112 NC_012912.1 4640509 4641693 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 4640509..4641693 Dickeya zeae Ech1591 8120964 YP_003006388.1 CDS Dd1591_4113 NC_012912.1 4641792 4642631 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase complement(4641792..4642631) Dickeya zeae Ech1591 8120965 YP_003006389.1 CDS Dd1591_4114 NC_012912.1 4642887 4643321 R PFAM: UspA domain protein; KEGG: eca:ECA0050 universal stress protein A; UspA domain-containing protein complement(4642887..4643321) Dickeya zeae Ech1591 8120966 YP_003006390.1 CDS Dd1591_4115 NC_012912.1 4643763 4643888 D hypothetical protein 4643763..4643888 Dickeya zeae Ech1591 8120967 YP_003006391.1 CDS Dd1591_4116 NC_012912.1 4643962 4644300 D ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 4643962..4644300 Dickeya zeae Ech1591 8120968 YP_003006392.1 CDS Dd1591_4117 NC_012912.1 4644458 4645966 R PFAM: phosphate transporter; KEGG: eca:ECA0048 low-affinity inorganic phosphate transporter; phosphate transporter complement(4644458..4645966) Dickeya zeae Ech1591 8120969 YP_003006393.1 CDS Dd1591_4118 NC_012912.1 4646270 4647454 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: spe:Spro_4688 hypothetical protein; hypothetical protein 4646270..4647454 Dickeya zeae Ech1591 8120970 YP_003006394.1 CDS Dd1591_4119 NC_012912.1 4647552 4649000 D PFAM: SMC domain protein; SMART: AAA ATPase; KEGG: ecm:EcSMS35_2489 SMC domain protein; SMC domain-containing protein 4647552..4649000 Dickeya zeae Ech1591 8120971 YP_003006395.1 CDS Dd1591_4120 NC_012912.1 4648984 4649607 D KEGG: ecm:EcSMS35_2490 hypothetical protein; hypothetical protein 4648984..4649607 Dickeya zeae Ech1591 8120972 YP_003006396.1 CDS Dd1591_4121 NC_012912.1 4649711 4649977 R PFAM: protein of unknown function DUF1471; KEGG: plu:plu4502 hypothetical protein; hypothetical protein complement(4649711..4649977) Dickeya zeae Ech1591 8120973 YP_003006397.1 CDS Dd1591_4122 NC_012912.1 4650177 4651040 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mlo:mll3063 hypothetical protein; Endonuclease/exonuclease/phosphatase complement(4650177..4651040) Dickeya zeae Ech1591 8120974 YP_003006398.1 CDS Dd1591_4123 NC_012912.1 4651066 4652169 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: avi:Avi_5254 ABC transporter nucleotide binding/ATPase protein (sugar); ABC transporter complement(4651066..4652169) Dickeya zeae Ech1591 8120975 YP_003006399.1 CDS Dd1591_4124 NC_012912.1 4652173 4653219 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1293 sugar ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component complement(4652173..4653219) Dickeya zeae Ech1591 8120976 YP_003006400.1 CDS Dd1591_4125 NC_012912.1 4653216 4654133 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_5252 ABC transporter membrane spanning protein (sugar); binding-protein-dependent transport systems inner membrane component complement(4653216..4654133) Dickeya zeae Ech1591 8120977 YP_003006401.1 CDS Dd1591_4126 NC_012912.1 4654207 4655577 R PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_1296 putative multiple sugar transport system substrate-binding protein; extracellular solute-binding protein family 1 complement(4654207..4655577) Dickeya zeae Ech1591 8120978 YP_003006402.1 CDS Dd1591_4127 NC_012912.1 4655678 4656781 D PFAM: ROK family protein; KEGG: avi:Avi_5249 transcriptional regulator ROK family; ROK family protein 4655678..4656781 Dickeya zeae Ech1591 8120979 YP_003006403.1 CDS Dd1591_4128 NC_012912.1 4656849 4657115 R PFAM: protein of unknown function DUF1471; KEGG: plu:plu4502 hypothetical protein; hypothetical protein complement(4656849..4657115) Dickeya zeae Ech1591 8120980 YP_003006404.1 CDS Dd1591_4129 NC_012912.1 4657334 4658704 D TIGRFAM: D-serine ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bvi:Bcep1808_3327 D-serine dehydratase; D-serine ammonia-lyase 4657334..4658704 Dickeya zeae Ech1591 8120981 YP_003006405.1 CDS Dd1591_4130 NC_012912.1 4658733 4659158 D PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV1_2510 putative acetyltransferase; GCN5-related N-acetyltransferase 4658733..4659158 Dickeya zeae Ech1591 8120982 YP_003006406.1 CDS Dd1591_4131 NC_012912.1 4659482 4660459 R KEGG: dac:Daci_1101 bile acid:sodium symporter; bile acid:sodium symporter complement(4659482..4660459) Dickeya zeae Ech1591 8120983 YP_003006407.1 CDS Dd1591_4132 NC_012912.1 4660604 4662052 R KEGG: cak:Caul_4076 phosphotransferase domain-containing protein; hypothetical protein complement(4660604..4662052) Dickeya zeae Ech1591 8120984 YP_003006408.1 CDS Dd1591_4133 NC_012912.1 4662045 4663325 R PFAM: extracellular solute-binding protein family 1; KEGG: dsh:Dshi_2014 extracellular solute-binding protein; extracellular solute-binding protein family 1 complement(4662045..4663325) Dickeya zeae Ech1591 8120985 YP_003006409.1 CDS Dd1591_4134 NC_012912.1 4663325 4664212 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0260 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(4663325..4664212) Dickeya zeae Ech1591 8120986 YP_003006410.1 CDS Dd1591_4135 NC_012912.1 4664224 4665132 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_78 probable binding protein dependent transport protein; binding-protein-dependent transport systems inner membrane component complement(4664224..4665132) Dickeya zeae Ech1591 8120987 YP_003006411.1 CDS Dd1591_4136 NC_012912.1 4665402 4666685 D PFAM: histidine acid phosphatase; KEGG: eca:ECA4198 putative exported phosphatase; Glucose-1-phosphatase 4665402..4666685 Dickeya zeae Ech1591 8120988 YP_003006412.1 CDS Dd1591_4137 NC_012912.1 4666827 4667996 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA3375 transporter; major facilitator superfamily protein complement(4666827..4667996) Dickeya zeae Ech1591 8120989 YP_003006413.1 CDS Dd1591_4138 NC_012912.1 4668166 4669056 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA3376 LysR family transcriptional regulator; LysR family transcriptional regulator complement(4668166..4669056) Dickeya zeae Ech1591 8120990 YP_003006414.1 CDS Dd1591_4139 NC_012912.1 4669090 4670268 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA3953 transporter; major facilitator superfamily protein complement(4669090..4670268) Dickeya zeae Ech1591 8120991 YP_003006415.1 CDS Dd1591_4140 NC_012912.1 4670491 4671099 D KEGG: aha:AHA_3219 long-chain acyl-CoA synthetase; long-chain acyl-CoA synthetase 4670491..4671099 Dickeya zeae Ech1591 8120992 YP_003006416.1 CDS Dd1591_4141 NC_012912.1 4671103 4671897 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: asa:ASA_1093 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4671103..4671897 Dickeya zeae Ech1591 8120993 YP_003006417.1 CDS Dd1591_4142 NC_012912.1 4671909 4672535 D KEGG: aha:AHA_3221 TPR repeat-containing protein; TPR repeat-containing protein 4671909..4672535 Dickeya zeae Ech1591 8117587 YP_003006418.1 CDS Dd1591_4143 NC_012912.1 4673193 4674875 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase complement(4673193..4674875) Dickeya zeae Ech1591 8117589 YP_003006419.1 CDS ligB NC_012912.1 4675241 4676923 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB complement(4675241..4676923) Dickeya zeae Ech1591 8117590 YP_003006420.1 CDS gmk NC_012912.1 4677217 4677840 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4677217..4677840 Dickeya zeae Ech1591 8117591 YP_003006421.1 CDS Dd1591_4146 NC_012912.1 4677895 4678170 D TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: eca:ECA0039 DNA-directed RNA polymerase subunit omega; DNA-directed RNA polymerase subunit omega 4677895..4678170 Dickeya zeae Ech1591 8117592 YP_003006422.1 CDS Dd1591_4147 NC_012912.1 4678195 4680297 D KEGG: eca:ECA0038 bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4678195..4680297 Dickeya zeae Ech1591 8117593 YP_003006423.1 CDS Dd1591_4148 NC_012912.1 4680304 4680996 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 4680304..4680996 Dickeya zeae Ech1591 8117594 YP_003006424.1 CDS Dd1591_4149 NC_012912.1 4680996 4683077 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4680996..4683077 Dickeya zeae Ech1591 8117595 YP_003006425.1 CDS Dd1591_4150 NC_012912.1 4683258 4684646 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: eta:ETA_00380 putative purine/xanthine transport protein; uracil-xanthine permease 4683258..4684646 Dickeya zeae Ech1591 8117596 YP_003006426.1 CDS Dd1591_4151 NC_012912.1 4684802 4686550 D PFAM: AsmA family protein; KEGG: eca:ECA0034 hypothetical protein; AsmA family protein 4684802..4686550 Dickeya zeae Ech1591 8117597 YP_003006427.1 CDS Dd1591_4152 NC_012912.1 4686616 4687557 R TIGRFAM: thioesterase domain protein; PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA0033 GNAT family acetyltransferase; thioesterase domain-containing protein complement(4686616..4687557) Dickeya zeae Ech1591 8117598 YP_003006428.1 CDS Dd1591_4153 NC_012912.1 4687657 4688094 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(4687657..4688094) Dickeya zeae Ech1591 8117599 YP_003006429.1 CDS Dd1591_4154 NC_012912.1 4688102 4688713 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: eca:ECA0031 phosphatase; phosphatase complement(4688102..4688713) Dickeya zeae Ech1591 8117600 YP_003006430.1 CDS Dd1591_4155 NC_012912.1 4688934 4690757 R TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: eum:ECUMN_4395 GTP-binding protein; GTP-binding protein TypA complement(4688934..4690757) Dickeya zeae Ech1591 8117601 YP_003006431.1 CDS glnA NC_012912.1 4691132 4692541 D forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4691132..4692541 Dickeya zeae Ech1591 8117602 YP_003006432.1 CDS Dd1591_4157 NC_012912.1 4692573 4692698 D hypothetical protein 4692573..4692698 Dickeya zeae Ech1591 8117603 YP_003006433.1 CDS glnL NC_012912.1 4692747 4693796 D sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4692747..4693796 Dickeya zeae Ech1591 8117604 YP_003006434.1 CDS glnG NC_012912.1 4693805 4695217 D response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4693805..4695217 Dickeya zeae Ech1591 8117605 YP_003006435.1 CDS Dd1591_4160 NC_012912.1 4695488 4695610 D hypothetical protein 4695488..4695610 Dickeya zeae Ech1591 8117606 YP_003006436.1 CDS Dd1591_4161 NC_012912.1 4695814 4697187 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4695814..4697187) Dickeya zeae Ech1591 8117607 YP_003006437.1 CDS Dd1591_4162 NC_012912.1 4697368 4697901 R PFAM: protein of unknown function DUF414; KEGG: eca:ECA0024 hypothetical protein; hypothetical protein complement(4697368..4697901) Dickeya zeae Ech1591 8117608 YP_003006438.1 CDS engB NC_012912.1 4698125 4698769 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4698125..4698769 Dickeya zeae Ech1591 8117609 YP_003006439.1 CDS Dd1591_4164 NC_012912.1 4699243 4702029 R KEGG: eca:ECA0021 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(4699243..4702029) Dickeya zeae Ech1591 8117610 YP_003006440.1 CDS Dd1591_4165 NC_012912.1 4702407 4703030 R PFAM: DSBA oxidoreductase; KEGG: eca:ECA0020 periplasmic protein disulfide isomerase I; periplasmic protein disulfide isomerase I complement(4702407..4703030) Dickeya zeae Ech1591 8117611 YP_003006441.1 CDS Dd1591_4166 NC_012912.1 4703053 4704039 R PFAM: aminoglycoside phosphotransferase; KEGG: spe:Spro_4890 serine/threonine protein kinase; aminoglycoside phosphotransferase complement(4703053..4704039) Dickeya zeae Ech1591 8117612 YP_003006442.1 CDS Dd1591_4167 NC_012912.1 4704075 4704344 R PFAM: protein of unknown function DUF1040; KEGG: eca:ECA0018 hypothetical protein; hypothetical protein complement(4704075..4704344) Dickeya zeae Ech1591 8117613 YP_003006443.1 CDS mobA NC_012912.1 4704455 4705030 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4704455..4705030 Dickeya zeae Ech1591 8117614 YP_003006444.1 CDS Dd1591_4169 NC_012912.1 4705023 4705541 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: spe:Spro_4893 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B 4705023..4705541 Dickeya zeae Ech1591 8117615 YP_003006445.1 CDS Dd1591_4170 NC_012912.1 4711460 4712485 R DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR complement(4711460..4712485) Dickeya zeae Ech1591 8117620 YP_003006446.1 CDS Dd1591_4171 NC_012912.1 4712498 4713430 R catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase complement(4712498..4713430) Dickeya zeae Ech1591 8117621 YP_003006447.1 CDS Dd1591_4172 NC_012912.1 4713507 4714397 R periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB complement(4713507..4714397) Dickeya zeae Ech1591 8117622 YP_003006448.1 CDS rbsC NC_012912.1 4714424 4715392 R functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease protein complement(4714424..4715392) Dickeya zeae Ech1591 8117623 YP_003006449.1 CDS Dd1591_4174 NC_012912.1 4715400 4716905 R with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP binding protein complement(4715400..4716905) Dickeya zeae Ech1591 8117624 YP_003006450.1 CDS Dd1591_4175 NC_012912.1 4716913 4717332 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(4716913..4717332) Dickeya zeae Ech1591 8117625 YP_003006451.1 CDS Dd1591_4176 NC_012912.1 4717856 4718257 R PFAM: conserved hypothetical protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cko:CKO_04413 hypothetical protein; hypothetical protein complement(4717856..4718257) Dickeya zeae Ech1591 8117626 YP_003006452.1 CDS Dd1591_4177 NC_012912.1 4718726 4719397 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: eca:ECA0008 two-component system response regulator; winged helix family two component transcriptional regulator 4718726..4719397 Dickeya zeae Ech1591 8117627 YP_003006453.1 CDS Dd1591_4178 NC_012912.1 4719384 4720733 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eca:ECA0007 sensor protein QseC; sensor protein QseC 4719384..4720733 Dickeya zeae Ech1591 8117628 YP_003006454.1 CDS trkD NC_012912.1 4720861 4722729 R Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup complement(4720861..4722729) Dickeya zeae Ech1591 8117629 YP_003006455.1 CDS Dd1591_4180 NC_012912.1 4722992 4724488 D interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA 4722992..4724488 Dickeya zeae Ech1591 8117630 YP_003006456.1 CDS yieM NC_012912.1 4724494 4725969 D contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 4724494..4725969 Dickeya zeae Ech1591 8117631 YP_003006457.1 CDS Dd1591_4182 NC_012912.1 4726077 4726541 D transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4726077..4726541 Dickeya zeae Ech1591 8117632 YP_003006458.1 CDS Dd1591_4183 NC_012912.1 4726632 4727075 D PFAM: flavodoxin/nitric oxide synthase; KEGG: eca:ECA0001 flavodoxin; flavodoxin/nitric oxide synthase 4726632..4727075 Dickeya zeae Ech1591 8117633 YP_003006459.1 CDS Dd1591_4184 NC_012912.1 4727454 4729343 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4727454..4729343 Dickeya zeae Ech1591 8117634 YP_003006460.1 CDS Dd1591_4185 NC_012912.1 4729420 4730040 D TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: yen:YE4214 glucose-inhibited division protein B; methyltransferase GidB 4729420..4730040 Dickeya zeae Ech1591 8117635 YP_003006461.1 CDS Dd1591_4186 NC_012912.1 4730127 4730288 D hypothetical protein 4730127..4730288 Dickeya zeae Ech1591 8117636 YP_003006462.1 CDS Dd1591_4187 NC_012912.1 4730661 4731044 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 4730661..4731044 Dickeya zeae Ech1591 8117637 YP_003006463.1 CDS Dd1591_4188 NC_012912.1 4731067 4731858 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4731067..4731858 Dickeya zeae Ech1591 8117638 YP_003006464.1 CDS Dd1591_4189 NC_012912.1 4731907 4732146 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4731907..4732146 Dickeya zeae Ech1591 8117639 YP_003006465.1 CDS Dd1591_4190 NC_012912.1 4732210 4732680 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4732210..4732680 Dickeya zeae Ech1591 8117640 YP_003006466.1 CDS Dd1591_4191 NC_012912.1 4732695 4733228 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4732695..4733228 Dickeya zeae Ech1591 8117641 YP_003006467.1 CDS Dd1591_4192 NC_012912.1 4733241 4734782 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4733241..4734782 Dickeya zeae Ech1591 8117642 YP_003006468.1 CDS Dd1591_4193 NC_012912.1 4734836 4735699 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4734836..4735699 Dickeya zeae Ech1591 8117643 YP_003006469.1 CDS Dd1591_4194 NC_012912.1 4735748 4737130 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4735748..4737130 Dickeya zeae Ech1591 8117644 YP_003006470.1 CDS Dd1591_4195 NC_012912.1 4737151 4737573 D TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: eca:ECA4511 F0F1 ATP synthase subunit epsilon; ATP synthase F1 subunit epsilon 4737151..4737573 Dickeya zeae Ech1591 8117645 YP_003006471.1 CDS Dd1591_4196 NC_012912.1 4737703 4739907 R KEGG: eca:ECA4510 exopolygalacturonate lyase; exopolygalacturonate lyase complement(4737703..4739907) Dickeya zeae Ech1591 8117646 YP_003006472.1 CDS Dd1591_4197 NC_012912.1 4740268 4741638 D KEGG: spe:Spro_0010 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; UDP-N-acetylglucosamine pyrophosphorylase 4740268..4741638 Dickeya zeae Ech1591 8117647 YP_003006473.1 CDS Dd1591_4198 NC_012912.1 4741908 4743743 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4741908..4743743 Dickeya zeae Ech1591 8117648 YP_003006474.1 CDS Dd1591_4201 NC_012912.1 4744923 4745219 D PFAM: transposase IS3/IS911 family protein; KEGG: eci:UTI89_C4918 hypothetical protein; transposase IS3/IS911 family protein 4744923..4745219 Dickeya zeae Ech1591 8117651 YP_003006475.1 CDS Dd1591_4203 NC_012912.1 4746125 4746712 D KEGG: slo:Shew_3662 hypothetical protein; hypothetical protein 4746125..4746712 Dickeya zeae Ech1591 8117653 YP_003006476.1 CDS Dd1591_4204 NC_012912.1 4747041 4749356 R KEGG: eca:ECA3625 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; PAS/PAC and GAF sensors-containing diguanylate cyclase complement(4747041..4749356) Dickeya zeae Ech1591 8117654 YP_003006477.1 CDS Dd1591_4205 NC_012912.1 4749731 4751167 R KEGG: rru:Rru_A2993 hypothetical protein; hypothetical protein complement(4749731..4751167) Dickeya zeae Ech1591 8117655 YP_003006478.1 CDS Dd1591_4206 NC_012912.1 4751312 4752601 R KEGG: rru:Rru_A2994 hypothetical protein; hypothetical protein complement(4751312..4752601) Dickeya zeae Ech1591 8117656 YP_003006479.1 CDS Dd1591_4207 NC_012912.1 4752598 4753011 R KEGG: rru:Rru_A2995 hypothetical protein; hypothetical protein complement(4752598..4753011) Dickeya zeae Ech1591 8117657 YP_003006480.1 CDS Dd1591_4208 NC_012912.1 4753317 4754357 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA4477 phosphate transporter subunit; phosphate ABC transporter substrate-binding protein 4753317..4754357 Dickeya zeae Ech1591 8117658 YP_003006481.1 CDS pstC NC_012912.1 4754488 4755468 D part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 4754488..4755468 Dickeya zeae Ech1591 8117659 YP_003006482.1 CDS pstA NC_012912.1 4755468 4756355 D Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 4755468..4756355 Dickeya zeae Ech1591 8117660 YP_003006483.1 CDS pstB NC_012912.1 4756465 4757241 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 4756465..4757241 Dickeya zeae Ech1591 8117661 YP_003006484.1 CDS Dd1591_4212 NC_012912.1 4757255 4757983 D regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 4757255..4757983 Dickeya zeae Ech1591 8117662 YP_003006485.1 CDS Dd1591_4213 NC_012912.1 4758235 4759071 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: eca:ECA4470 extracellular solute-binding protein; extracellular solute-binding protein family 3 4758235..4759071 Dickeya zeae Ech1591 8117663 YP_003006486.1 CDS Dd1591_4214 NC_012912.1 4759208 4759951 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4468 binding-protein-dependent transport system inner membrane component; polar amino acid ABC transporter permease 4759208..4759951 Dickeya zeae Ech1591 8117664 YP_003006487.1 CDS Dd1591_4215 NC_012912.1 4759953 4760711 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4467 binding-protein-dependent transport system inner membrane component; polar amino acid ABC transporter permease 4759953..4760711 Dickeya zeae Ech1591 8117665 YP_003006488.1 CDS Dd1591_4216 NC_012912.1 4760716 4761387 R YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase complement(4760716..4761387) Dickeya zeae Ech1591 8117666 YP_003006489.1 CDS Dd1591_4217 NC_012912.1 4761661 4762998 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: eca:ECA4464 putative permease; Xanthine/uracil/vitamin C permease 4761661..4762998 Dickeya zeae Ech1591 8120142 YP_003006490.1 CDS Dd1591_4218 NC_012912.1 4763053 4763793 R KEGG: eca:ECA4463 hypothetical protein; hypothetical protein complement(4763053..4763793) Dickeya zeae Ech1591 8120143 YP_003006491.1 CDS Dd1591_4219 NC_012912.1 4764099 4764632 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA4462 electron transport protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(4764099..4764632) Dickeya zeae Ech1591 8120144 YP_003006492.1 CDS Dd1591_4220 NC_012912.1 4764629 4766632 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); putative oxidoreductase Fe-S binding subunit complement(4764629..4766632) Dickeya zeae Ech1591 8120145 YP_003006493.1 CDS Dd1591_4221 NC_012912.1 4767238 4767909 D PFAM: Curli production assembly/transport component CsgG; KEGG: eca:ECA4460 putative lipoprotein; Curli production assembly/transport component CsgG 4767238..4767909 Dickeya zeae Ech1591 8120146 YP_003006494.1 CDS Dd1591_4222 NC_012912.1 4767928 4768281 D KEGG: eca:ECA4459 putative lipoprotein; putative lipoprotein 4767928..4768281 Dickeya zeae Ech1591 8120147 YP_003006495.1 CDS Dd1591_4223 NC_012912.1 4768285 4768944 D PFAM: protein of unknown function DUF799; KEGG: eca:ECA4458 putative lipoprotein; hypothetical protein 4768285..4768944 Dickeya zeae Ech1591 8120148 YP_003006496.1 CDS Dd1591_4224 NC_012912.1 4769845 4770987 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 4769845..4770987 Dickeya zeae Ech1591 8120149 YP_003006497.1 CDS Dd1591_4225 NC_012912.1 4770987 4771970 D PFAM: glycosyl transferase family 2; KEGG: sgl:SG1844 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; glycosyl transferase family 2 4770987..4771970 Dickeya zeae Ech1591 8120150 YP_003006498.1 CDS Dd1591_4226 NC_012912.1 4771967 4773958 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 4771967..4773958 Dickeya zeae Ech1591 8120151 YP_003006499.1 CDS Dd1591_4227 NC_012912.1 4773972 4774871 D PFAM: polysaccharide deacetylase; KEGG: ent:Ent638_2076 polysaccharide deacetylase; polysaccharide deacetylase 4773972..4774871 Dickeya zeae Ech1591 8120152 YP_003006500.1 CDS arnT NC_012912.1 4774871 4776529 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 4774871..4776529 Dickeya zeae Ech1591 8120153 YP_003006501.1 CDS Dd1591_4229 NC_012912.1 4776526 4776867 D KEGG: eta:ETA_23780 putative inner membrane protein; putative inner membrane protein 4776526..4776867 Dickeya zeae Ech1591 8120154 YP_003006502.1 CDS Dd1591_4230 NC_012912.1 4776864 4777262 D KEGG: ent:Ent638_2073 hypothetical protein; hypothetical protein 4776864..4777262 Dickeya zeae Ech1591 8120155 YP_003006503.1 CDS Dd1591_4231 NC_012912.1 4777361 4777840 D PFAM: GCN5-related N-acetyltransferase; KEGG: eta:ETA_17400 putative GNAT-family acetyltransferase; GCN5-related N-acetyltransferase 4777361..4777840 Dickeya zeae Ech1591 8120156 YP_003006504.1 CDS Dd1591_4232 NC_012912.1 4777946 4778557 R KEGG: atc:AGR_C_3633 conserved hypothetical protein PA0741; hypothetical protein complement(4777946..4778557) Dickeya zeae Ech1591 8120157 YP_003006505.1 CDS Dd1591_4233 NC_012912.1 4778699 4779085 D PFAM: helix-turn-helix HxlR type; KEGG: atc:AGR_C_3635 hypothetical protein; HxlR family transcriptional regulator 4778699..4779085 Dickeya zeae Ech1591 8120158 YP_003006506.1 CDS Dd1591_4234 NC_012912.1 4779241 4780329 R KEGG: dac:Daci_4795 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(4779241..4780329) Dickeya zeae Ech1591 8120159 YP_003006507.1 CDS Dd1591_4235 NC_012912.1 4780651 4781424 D KEGG: pfo:Pfl01_2954 beta-lactamase-like; beta-lactamase-like protein 4780651..4781424 Dickeya zeae Ech1591 8120160 YP_003006508.1 CDS Dd1591_4236 NC_012912.1 4781469 4782446 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA2247 AraC family transcription regulator; AraC family transcriptional regulator 4781469..4782446 Dickeya zeae Ech1591 8120161 YP_003006509.1 CDS Dd1591_4237 NC_012912.1 4782450 4783520 R KEGG: neu:NE2494 hypothetical protein; hypothetical protein complement(4782450..4783520) Dickeya zeae Ech1591 8120162 YP_003006510.1 CDS Dd1591_4238 NC_012912.1 4783520 4785286 R KEGG: neu:NE2495 ABC transporter; ABC transporter complement(4783520..4785286) Dickeya zeae Ech1591 8120163 YP_003006511.1 CDS Dd1591_4240 NC_012912.1 4785558 4786868 R KEGG: neu:NE2496 restriction modification system, type I; Restriction endonuclease S subunits-like protein complement(4785558..4786868) Dickeya zeae Ech1591 8120165 YP_003006512.1 CDS Dd1591_4241 NC_012912.1 4786865 4788577 R PFAM: N-6 DNA methylase; putative RNA methylase; KEGG: neu:NE2497 type I restriction modification enzyme methylase subunit; N-6 DNA methylase complement(4786865..4788577) Dickeya zeae Ech1591 8120166 YP_003006513.1 CDS dinD NC_012912.1 4788595 4789464 R KEGG: ajs:Ajs_0196 DNA-damage-inducible protein D; DNA-damage-inducible protein D complement(4788595..4789464) Dickeya zeae Ech1591 8120167 YP_003006514.1 CDS Dd1591_4243 NC_012912.1 4789495 4792296 R PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; KEGG: neu:NE2499 DEAD/DEAH box helicase; type III restriction protein res subunit complement(4789495..4792296) Dickeya zeae Ech1591 8120168 YP_003006515.1 CDS Dd1591_4244 NC_012912.1 4792800 4794119 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: plu:plu4900 HipA protein; HipA N-terminal domain-containing protein complement(4792800..4794119) Dickeya zeae Ech1591 8120169 YP_003006516.1 CDS Dd1591_4245 NC_012912.1 4794119 4794373 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sbn:Sbal195_0378 helix-turn-helix domain-containing protein; helix-turn-helix domain-containing protein complement(4794119..4794373) Dickeya zeae Ech1591 8120170 YP_003006517.1 CDS Dd1591_4246 NC_012912.1 4794911 4795528 D PFAM: Resolvase domain; KEGG: spc:Sputcn32_3979 resolvase domain-containing protein; Resolvase domain-containing protein 4794911..4795528 Dickeya zeae Ech1591 8120171 YP_003006518.1 CDS Dd1591_4247 NC_012912.1 4795525 4795848 R KEGG: shm:Shewmr7_0345 hypothetical protein; hypothetical protein complement(4795525..4795848) Dickeya zeae Ech1591 8120172 YP_003006519.1 CDS Dd1591_4248 NC_012912.1 4795832 4795951 R hypothetical protein complement(4795832..4795951) Dickeya zeae Ech1591 8120173 YP_003006520.1 CDS Dd1591_4250 NC_012912.1 4796480 4799563 R PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: tbd:Tbd_2685 DEAD/DEAH box helicase; hypothetical protein complement(4796480..4799563) Dickeya zeae Ech1591 8120175 YP_003006521.1 CDS Dd1591_4251 NC_012912.1 4799575 4800501 R PFAM: FRG domain protein; KEGG: gbm:Gbem_3768 FRG domain protein; FRG domain-containing protein complement(4799575..4800501) Dickeya zeae Ech1591 8120176 YP_003006522.1 CDS Dd1591_4252 NC_012912.1 4800498 4801886 R PFAM: restriction modification system DNA specificity domain; KEGG: ccs:CCNA_00657 type I restriction-modification system specificity subunit; restriction modification system DNA specificity domain-containing protein complement(4800498..4801886) Dickeya zeae Ech1591 8120177 YP_003006523.1 CDS Dd1591_4253 NC_012912.1 4801883 4804009 R PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_2604 N-6 DNA methylase; N-6 DNA methylase complement(4801883..4804009) Dickeya zeae Ech1591 8120178 YP_003006524.1 CDS Dd1591_4254 NC_012912.1 4804006 4804194 R TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: pmr:PMI3144 excisionase; phage transcriptional regulator AlpA complement(4804006..4804194) Dickeya zeae Ech1591 8120179 YP_003006525.1 CDS Dd1591_4255 NC_012912.1 4804589 4804924 D TIGRFAM: DNA binding domain protein, excisionase family; KEGG: spc:Sputcn32_3991 phage transcriptional regulator, AlpA; DNA binding domain-containing protein, excisionase family 4804589..4804924 Dickeya zeae Ech1591 8120180 YP_003006526.1 CDS Dd1591_4257 NC_012912.1 4805084 4805899 R PFAM: Integrase catalytic region; KEGG: psa:PST_1859 transposase, IS3 family; Integrase catalytic region complement(4805084..4805899) Dickeya zeae Ech1591 8120182 YP_003006527.1 CDS Dd1591_4258 NC_012912.1 4805956 4806237 R PFAM: transposase IS3/IS911 family protein; KEGG: psa:PST_3402 ISxac3 transposase; transposase IS3/IS911 family protein complement(4805956..4806237) Dickeya zeae Ech1591 8120183 YP_003006528.1 CDS Dd1591_4259 NC_012912.1 4806275 4807021 D KEGG: net:Neut_2254 putative DNA helicase; putative DNA helicase 4806275..4807021 Dickeya zeae Ech1591 8120184 YP_003006529.1 CDS Dd1591_4260 NC_012912.1 4807008 4807847 D PFAM: replication C family protein; KEGG: sty:HCM1.221 putative replication protein; replication C family protein 4807008..4807847 Dickeya zeae Ech1591 8120185 YP_003006530.1 CDS Dd1591_4261 NC_012912.1 4807988 4808104 D hypothetical protein 4807988..4808104 Dickeya zeae Ech1591 8120186 YP_003006531.1 CDS Dd1591_4262 NC_012912.1 4808057 4809196 R PFAM: integrase family protein; KEGG: spc:Sputcn32_4000 phage integrase family protein; integrase family protein complement(4808057..4809196) Dickeya zeae Ech1591 8120187 YP_003006532.1 CDS trmE NC_012912.1 4809359 4810723 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4809359..4810723) Dickeya zeae Ech1591 8120188 YP_003006533.1 CDS Dd1591_4264 NC_012912.1 4810840 4812471 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(4810840..4812471) Dickeya zeae Ech1591 8120189 YP_003006534.1 CDS Dd1591_4265 NC_012912.1 4812474 4812731 R PFAM: protein of unknown function DUF37; KEGG: sgl:SG2430 hypothetical protein; hypothetical protein complement(4812474..4812731) Dickeya zeae Ech1591 8120190 YP_003006535.1 CDS rnpA NC_012912.1 4812695 4813054 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4812695..4813054) Dickeya zeae Ech1591 8120191 YP_003006536.1 CDS rpmH NC_012912.1 4813073 4813213 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4813073..4813213) Dickeya zeae Ech1591 8120192 Dd1591_R0002 tRNA Dd1591_R0002 NC_012912.1 156719 156795 D tRNA-Ile 156719..156795 Dickeya zeae Ech1591 8117086 Dd1591_R0003 tRNA Dd1591_R0003 NC_012912.1 156908 156983 D tRNA-Ala 156908..156983 Dickeya zeae Ech1591 8117087 Dd1591_R0006 tRNA Dd1591_R0006 NC_012912.1 160369 160445 D tRNA-Asp 160369..160445 Dickeya zeae Ech1591 8117090 Dd1591_R0007 tRNA Dd1591_R0007 NC_012912.1 160454 160529 D tRNA-Trp 160454..160529 Dickeya zeae Ech1591 8117091 Dd1591_R0008 tRNA Dd1591_R0008 NC_012912.1 207352 207428 D tRNA-Arg 207352..207428 Dickeya zeae Ech1591 8117127 Dd1591_R0009 tRNA Dd1591_R0009 NC_012912.1 207511 207586 D tRNA-His 207511..207586 Dickeya zeae Ech1591 8117128 Dd1591_R0010 tRNA Dd1591_R0010 NC_012912.1 207605 207690 D tRNA-Leu 207605..207690 Dickeya zeae Ech1591 8117129 Dd1591_R0011 tRNA Dd1591_R0011 NC_012912.1 207718 207794 D tRNA-Pro 207718..207794 Dickeya zeae Ech1591 8117130 Dd1591_R0013 tRNA Dd1591_R0013 NC_012912.1 401673 401749 D tRNA-Ile 401673..401749 Dickeya zeae Ech1591 8116927 Dd1591_R0014 tRNA Dd1591_R0014 NC_012912.1 401862 401937 D tRNA-Ala 401862..401937 Dickeya zeae Ech1591 8116928 Dd1591_R0017 tRNA Dd1591_R0017 NC_012912.1 438317 438392 D tRNA-Gly 438317..438392 Dickeya zeae Ech1591 8118475 Dd1591_R0018 tRNA Dd1591_R0018 NC_012912.1 473317 473392 D tRNA-Gly 473317..473392 Dickeya zeae Ech1591 8118499 Dd1591_R0019 tRNA Dd1591_R0019 NC_012912.1 550466 550541 D tRNA-Gly 550466..550541 Dickeya zeae Ech1591 8120221 Dd1591_R0021 tRNA Dd1591_R0021 NC_012912.1 984124 984199 D tRNA-Glu 984124..984199 Dickeya zeae Ech1591 8120666 Dd1591_R0024 tRNA Dd1591_R0024 NC_012912.1 987562 987637 D tRNA-Thr 987562..987637 Dickeya zeae Ech1591 8120669 Dd1591_R0026 tRNA Dd1591_R0026 NC_012912.1 1044610 1044685 D tRNA-Thr 1044610..1044685 Dickeya zeae Ech1591 8117717 Dd1591_R0027 tRNA Dd1591_R0027 NC_012912.1 1136739 1136831 D tRNA-Ser 1136739..1136831 Dickeya zeae Ech1591 8121128 Dd1591_R0028 tRNA Dd1591_R0028 NC_012912.1 1136839 1136915 D tRNA-Arg 1136839..1136915 Dickeya zeae Ech1591 8121129 Dd1591_R0029 tRNA Dd1591_R0029 NC_012912.1 1136973 1137049 D tRNA-Arg 1136973..1137049 Dickeya zeae Ech1591 8121130 Dd1591_R0030 tRNA Dd1591_R0030 NC_012912.1 1137107 1137183 D tRNA-Arg 1137107..1137183 Dickeya zeae Ech1591 8121131 Dd1591_R0032 tRNA Dd1591_R0032 NC_012912.1 1159412 1159487 D tRNA-Glu 1159412..1159487 Dickeya zeae Ech1591 8121153 Dd1591_R0035 tRNA Dd1591_R0035 NC_012912.1 1162899 1162975 D tRNA-Asp 1162899..1162975 Dickeya zeae Ech1591 8120276 Dd1591_R0036 tRNA Dd1591_R0036 NC_012912.1 1168364 1168440 D tRNA-Asp 1168364..1168440 Dickeya zeae Ech1591 8120283 Dd1591_R0037 tRNA Dd1591_R0037 NC_012912.1 1216382 1216457 R tRNA-Lys complement(1216382..1216457) Dickeya zeae Ech1591 8120328 Dd1591_R0038 tRNA Dd1591_R0038 NC_012912.1 1216465 1216540 R tRNA-Val complement(1216465..1216540) Dickeya zeae Ech1591 8120329 Dd1591_R0039 tRNA Dd1591_R0039 NC_012912.1 1216584 1216659 R tRNA-Val complement(1216584..1216659) Dickeya zeae Ech1591 8120330 Dd1591_R0040 tRNA Dd1591_R0040 NC_012912.1 1216704 1216779 R tRNA-Val complement(1216704..1216779) Dickeya zeae Ech1591 8120331 Dd1591_R0041 tRNA Dd1591_R0041 NC_012912.1 1220129 1220204 D tRNA-Ala 1220129..1220204 Dickeya zeae Ech1591 8120334 Dd1591_R0042 tRNA Dd1591_R0042 NC_012912.1 1220252 1220327 D tRNA-Ala 1220252..1220327 Dickeya zeae Ech1591 8120335 Dd1591_R0043 tRNA Dd1591_R0043 NC_012912.1 1389362 1389449 D tRNA-Ser 1389362..1389449 Dickeya zeae Ech1591 8118774 Dd1591_R0044 tRNA Dd1591_R0044 NC_012912.1 1465585 1465661 R tRNA-Arg complement(1465585..1465661) Dickeya zeae Ech1591 8118686 Dd1591_R0045 tRNA Dd1591_R0045 NC_012912.1 1520875 1520949 R tRNA-Arg complement(1520875..1520949) Dickeya zeae Ech1591 8118410 Dd1591_R0046 tRNA Dd1591_R0046 NC_012912.1 1732957 1733032 R tRNA-Asn complement(1732957..1733032) Dickeya zeae Ech1591 8117390 Dd1591_R0047 tRNA Dd1591_R0047 NC_012912.1 1735510 1735585 D tRNA-Lys 1735510..1735585 Dickeya zeae Ech1591 8117393 Dd1591_R0048 tRNA Dd1591_R0048 NC_012912.1 1739981 1740056 D tRNA-Gly 1739981..1740056 Dickeya zeae Ech1591 8117398 Dd1591_R0049 tRNA Dd1591_R0049 NC_012912.1 1740083 1740156 D tRNA-Cys 1740083..1740156 Dickeya zeae Ech1591 8117399 Dd1591_R0050 tRNA Dd1591_R0050 NC_012912.1 1740165 1740251 D tRNA-Leu 1740165..1740251 Dickeya zeae Ech1591 8117400 Dd1591_R0051 tRNA Dd1591_R0051 NC_012912.1 1817089 1817178 R tRNA-Ser complement(1817089..1817178) Dickeya zeae Ech1591 8118116 Dd1591_R0052 tRNA Dd1591_R0052 NC_012912.1 1961441 1961517 R tRNA-Val complement(1961441..1961517) Dickeya zeae Ech1591 8116793 Dd1591_R0053 tRNA Dd1591_R0053 NC_012912.1 1961550 1961626 R tRNA-Val complement(1961550..1961626) Dickeya zeae Ech1591 8116794 Dd1591_R0054 tRNA Dd1591_R0054 NC_012912.1 2533524 2533608 D tRNA-Tyr 2533524..2533608 Dickeya zeae Ech1591 8119202 Dd1591_R0055 tRNA Dd1591_R0055 NC_012912.1 2608718 2608807 D tRNA-Ser 2608718..2608807 Dickeya zeae Ech1591 8118885 Dd1591_R0056 tRNA Dd1591_R0056 NC_012912.1 2804152 2804228 D tRNA-Pro 2804152..2804228 Dickeya zeae Ech1591 8120088 Dd1591_R0057 tRNA Dd1591_R0057 NC_012912.1 2916674 2916763 R tRNA-Ser complement(2916674..2916763) Dickeya zeae Ech1591 8120410 Dd1591_R0058 tRNA Dd1591_R0058 NC_012912.1 2917759 2917834 D tRNA-Asn 2917759..2917834 Dickeya zeae Ech1591 8120412 Dd1591_R0059 tRNA Dd1591_R0059 NC_012912.1 3102782 3102857 D tRNA-Asn 3102782..3102857 Dickeya zeae Ech1591 8119176 Dd1591_R0060 tRNA Dd1591_R0060 NC_012912.1 3303917 3303992 R tRNA-Lys complement(3303917..3303992) Dickeya zeae Ech1591 8118309 Dd1591_R0061 tRNA Dd1591_R0061 NC_012912.1 3304021 3304096 R tRNA-Lys complement(3304021..3304096) Dickeya zeae Ech1591 8118310 Dd1591_R0062 tRNA Dd1591_R0062 NC_012912.1 3356864 3356940 D tRNA-Met 3356864..3356940 Dickeya zeae Ech1591 8118357 Dd1591_R0063 tRNA Dd1591_R0063 NC_012912.1 3356951 3357035 D tRNA-Leu 3356951..3357035 Dickeya zeae Ech1591 8118358 Dd1591_R0064 tRNA Dd1591_R0064 NC_012912.1 3357090 3357164 D tRNA-Gln 3357090..3357164 Dickeya zeae Ech1591 8118359 Dd1591_R0065 tRNA Dd1591_R0065 NC_012912.1 3357201 3357275 D tRNA-Gln 3357201..3357275 Dickeya zeae Ech1591 8118360 Dd1591_R0066 tRNA Dd1591_R0066 NC_012912.1 3357318 3357394 D tRNA-Met 3357318..3357394 Dickeya zeae Ech1591 8118361 Dd1591_R0067 tRNA Dd1591_R0067 NC_012912.1 3357403 3357477 D tRNA-Gln 3357403..3357477 Dickeya zeae Ech1591 8118362 Dd1591_R0069 tRNA Dd1591_R0069 NC_012912.1 3628748 3628824 D tRNA-Met 3628748..3628824 Dickeya zeae Ech1591 8121053 Dd1591_R0070 tRNA Dd1591_R0070 NC_012912.1 3628865 3628941 D tRNA-Met 3628865..3628941 Dickeya zeae Ech1591 8121054 Dd1591_R0071 tRNA Dd1591_R0071 NC_012912.1 3655039 3655114 D tRNA-Phe 3655039..3655114 Dickeya zeae Ech1591 8120839 Dd1591_R0073 tRNA Dd1591_R0073 NC_012912.1 3889709 3889782 R tRNA-Gly complement(3889709..3889782) Dickeya zeae Ech1591 8119957 Dd1591_R0074 tRNA Dd1591_R0074 NC_012912.1 3914580 3914665 R tRNA-Leu complement(3914580..3914665) Dickeya zeae Ech1591 8119980 Dd1591_R0075 tRNA Dd1591_R0075 NC_012912.1 3914710 3914795 R tRNA-Leu complement(3914710..3914795) Dickeya zeae Ech1591 8117907 Dd1591_R0076 tRNA Dd1591_R0076 NC_012912.1 3914828 3914913 R tRNA-Leu complement(3914828..3914913) Dickeya zeae Ech1591 8117908 Dd1591_R0077 tRNA Dd1591_R0077 NC_012912.1 3941271 3941347 R tRNA-Met complement(3941271..3941347) Dickeya zeae Ech1591 8117934 Dd1591_R0078 tRNA Dd1591_R0078 NC_012912.1 3941407 3941493 R tRNA-Leu complement(3941407..3941493) Dickeya zeae Ech1591 8117935 Dd1591_R0079 tRNA Dd1591_R0079 NC_012912.1 3963321 3963396 D tRNA-Met 3963321..3963396 Dickeya zeae Ech1591 8117958 Dd1591_R0080 tRNA Dd1591_R0080 NC_012912.1 4016428 4016503 D tRNA-Phe 4016428..4016503 Dickeya zeae Ech1591 8120000 Dd1591_R0082 tRNA Dd1591_R0082 NC_012912.1 4204909 4204993 R tRNA-Leu complement(4204909..4204993) Dickeya zeae Ech1591 8120716 Dd1591_R0086 tRNA Dd1591_R0086 NC_012912.1 4363822 4363897 R tRNA-Glu complement(4363822..4363897) Dickeya zeae Ech1591 8118816 Dd1591_R0088 tRNA Dd1591_R0088 NC_012912.1 4399507 4399582 R tRNA-Thr complement(4399507..4399582) Dickeya zeae Ech1591 8118850 Dd1591_R0089 tRNA Dd1591_R0089 NC_012912.1 4399592 4399666 R tRNA-Gly complement(4399592..4399666) Dickeya zeae Ech1591 8118851 Dd1591_R0090 tRNA Dd1591_R0090 NC_012912.1 4399969 4400053 R tRNA-Tyr complement(4399969..4400053) Dickeya zeae Ech1591 8118852 Dd1591_R0091 tRNA Dd1591_R0091 NC_012912.1 4400071 4400146 R tRNA-Thr complement(4400071..4400146) Dickeya zeae Ech1591 8118853 Dd1591_R0094 tRNA Dd1591_R0094 NC_012912.1 4407374 4407449 R tRNA-Glu complement(4407374..4407449) Dickeya zeae Ech1591 8118860 Dd1591_R0096 tRNA Dd1591_R0096 NC_012912.1 4672974 4673050 R tRNA-Pro complement(4672974..4673050) Dickeya zeae Ech1591 8117588 Dd1591_R0099 tRNA Dd1591_R0099 NC_012912.1 4709326 4709401 R tRNA-Glu complement(4709326..4709401) Dickeya zeae Ech1591 8117618 Dd1591_R0001 rRNA Dd1591_R0001 NC_012912.1 155115 156644 D 16S ribosomal RNA 155115..156644 Dickeya zeae Ech1591 8117085 Dd1591_R0004 rRNA Dd1591_R0004 NC_012912.1 157153 160060 D 23S ribosomal RNA 157153..160060 Dickeya zeae Ech1591 8117088 Dd1591_R0005 rRNA Dd1591_R0005 NC_012912.1 160189 160303 D 5S ribosomal RNA 160189..160303 Dickeya zeae Ech1591 8117089 Dd1591_R0012 rRNA Dd1591_R0012 NC_012912.1 400069 401598 D 16S ribosomal RNA 400069..401598 Dickeya zeae Ech1591 8116926 Dd1591_R0015 rRNA Dd1591_R0015 NC_012912.1 402107 405014 D 23S ribosomal RNA 402107..405014 Dickeya zeae Ech1591 8116929 Dd1591_R0016 rRNA Dd1591_R0016 NC_012912.1 405146 405260 D 5S ribosomal RNA 405146..405260 Dickeya zeae Ech1591 8116930 Dd1591_R0020 rRNA Dd1591_R0020 NC_012912.1 982503 984032 D 16S ribosomal RNA 982503..984032 Dickeya zeae Ech1591 8120665 Dd1591_R0022 rRNA Dd1591_R0022 NC_012912.1 984396 987303 D 23S ribosomal RNA 984396..987303 Dickeya zeae Ech1591 8120667 Dd1591_R0023 rRNA Dd1591_R0023 NC_012912.1 987434 987548 D 5S ribosomal RNA 987434..987548 Dickeya zeae Ech1591 8120668 Dd1591_R0025 rRNA Dd1591_R0025 NC_012912.1 987682 987796 D 5S ribosomal RNA 987682..987796 Dickeya zeae Ech1591 8120670 Dd1591_R0031 rRNA Dd1591_R0031 NC_012912.1 1157791 1159320 D 16S ribosomal RNA 1157791..1159320 Dickeya zeae Ech1591 8121152 Dd1591_R0033 rRNA Dd1591_R0033 NC_012912.1 1159684 1162591 D 23S ribosomal RNA 1159684..1162591 Dickeya zeae Ech1591 8120274 Dd1591_R0034 rRNA Dd1591_R0034 NC_012912.1 1162720 1162834 D 5S ribosomal RNA 1162720..1162834 Dickeya zeae Ech1591 8120275 Dd1591_R0084 rRNA Dd1591_R0084 NC_012912.1 4360475 4360589 R 5S ribosomal RNA complement(4360475..4360589) Dickeya zeae Ech1591 8118814 Dd1591_R0085 rRNA Dd1591_R0085 NC_012912.1 4360718 4363625 R 23S ribosomal RNA complement(4360718..4363625) Dickeya zeae Ech1591 8118815 Dd1591_R0087 rRNA Dd1591_R0087 NC_012912.1 4363989 4365518 R 16S ribosomal RNA complement(4363989..4365518) Dickeya zeae Ech1591 8118817 Dd1591_R0092 rRNA Dd1591_R0092 NC_012912.1 4404027 4404141 R 5S ribosomal RNA complement(4404027..4404141) Dickeya zeae Ech1591 8118858 Dd1591_R0093 rRNA Dd1591_R0093 NC_012912.1 4404270 4407177 R 23S ribosomal RNA complement(4404270..4407177) Dickeya zeae Ech1591 8118859 Dd1591_R0095 rRNA Dd1591_R0095 NC_012912.1 4407541 4409070 R 16S ribosomal RNA complement(4407541..4409070) Dickeya zeae Ech1591 8118861 Dd1591_R0097 rRNA Dd1591_R0097 NC_012912.1 4705979 4706093 R 5S ribosomal RNA complement(4705979..4706093) Dickeya zeae Ech1591 8117616 Dd1591_R0098 rRNA Dd1591_R0098 NC_012912.1 4706222 4709129 R 23S ribosomal RNA complement(4706222..4709129) Dickeya zeae Ech1591 8117617 Dd1591_R0100 rRNA Dd1591_R0100 NC_012912.1 4709493 4711022 R 16S ribosomal RNA complement(4709493..4711022) Dickeya zeae Ech1591 8117619