-- dump date   	20140619_065042
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004280721.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: lbf:LBF_0652 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_004280722.1	COGs: COG0593 ATPase involved in DNA replication initiation; HAMAP: Chromosomal replication control, initiator DnaA; InterPro IPR013317: IPR013159: IPR001957: IPR003593; KEGG: dth:DICTH_1702 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_004280723.1	COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: pmx:PERMA_1539 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit
YP_004280724.1	COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462: IPR004570; KEGG: swo:Swol_1261 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_004280725.1	COGs: COG0344 membrane protein; HAMAP: Protein of unknown function DUF205; InterPro IPR003811: IPR020788; KEGG: saf:SULAZ_1187 acyl-phosphate glycerol 3-phosphate acyltransferase; PFAM: Protein of unknown function DUF205; SPTR: Glycerol-3-phosphate acyltransferase; TIGRFAM: Membrane protein YgiH; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase
YP_004280726.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: gem:GM21_3026 polyprenyl synthetase; PFAM: polyprenyl synthetase; SPTR: polyprenyl synthetase; PFAM: polyprenyl synthetase
YP_004280727.1	COGs: COG1154 deoxyxylulose-5-phosphate synthase; HAMAP: deoxyxylulose-5-phosphate synthase; InterPro IPR005475: IPR005476: IPR005477; KEGG: aae:aq_881 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase, C-terminal domain; transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_004280728.1	COGs: COG1995 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: pmx:PERMA_0123 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; manually curated; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase
YP_004280729.1	COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: DHBP synthase RibB; GTP cyclohydrolase II; InterPro IPR000422: IPR000926; KEGG: tal:Thal_0286 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: DHBP synthase RibB; GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_004280730.1	COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: saf:SULAZ_0379 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; TIGRFAM: peptidase S14, ClpP; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_004280731.1	COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterPro IPR006674: IPR007685: IPR004095: IPR002912: IPR 004811: IPR003607; KEGG: sul:SYO3AOP1_0616 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT; PRIAM: GTP diphosphokinase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT protein; PFAM: HD domain; ACT domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_004280732.1	COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR015942: IPR004391; KEGG: tye:THEYE_A1384 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase
YP_004280733.1	COGs: COG0689 RNase PH; HAMAP: ribonuclease phosphorolytic, bacterial-type; InterPro IPR001247: IPR015847: IPR002381; KEGG: aoe:Clos_0557 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Nucleoside-triphosphatase; TIGRFAM: ribonuclease phosphorolytic, bacterial-type; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
YP_004280734.1	COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase; InterPro IPR002637: IPR020922; KEGG: chy:CHY_0315 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Nucleoside-triphosphatase; TIGRFAM: Ham1-like protein; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
YP_004280735.1	InterPro IPR003425; KEGG: adg:Adeg_1018 protein of unknown function YGGT; PFAM: Protein of unknown function YGGT; SPTR:  uncharacterized protein; PFAM: YGGT family
YP_004280736.1	COGs: COG1872 conserved hypothetical protein; HAMAP: Protein of unknown function DUF167; InterPro IPR003746; KEGG: swo:Swol_0959 hypothetical protein; PFAM: Protein of unknown function DUF167; SPTR: UPF0235 protein Swol_0959; manually curated; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: conserved hypothetical protein TIGR00251
YP_004280737.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: cob:COB47_0604 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Bacterial nucleoid protein Hbs; PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, beta subunit
YP_004280738.1	KEGG: zpr:ZPR_2872 hypothetical protein; SPTR:  uncharacterized protein
YP_004280739.1	COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: saf:SULAZ_0329 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_004280740.1	COGs: COG0124 histidyl-tRNA synthetase; HAMAP: ATP phosphoribosyltransferase regulatory subunit; InterPro IPR002314: IPR004517; KEGG: gbm:Gbem_0553 ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; PRIAM: histidine--tRNA ligase; SPTR: histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase, class IIa, PFAM: tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: ATP phosphoribosyltransferase, regulatory subunit
YP_004280741.1	COGs: COG0498 Threonine synthase; InterPro IPR001926: IPR004450; KEGG: saf:SULAZ_1669 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase
YP_004280742.1	COGs: COG0329 dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: dihydrodipicolinate synthase; InterPro IPR002220: IPR005263; KEGG: dvl:Dvul_1296 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase subfamily; PFAM: dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase
YP_004280743.1	KEGG: pmx:PERMA_1519 hypothetical protein; SPTR:  uncharacterized protein
YP_004280744.1	COGs: COG0289 dihydrodipicolinate reductase; HAMAP: dihydrodipicolinate reductase, bacterial/plant; InterPro IPR000846: IPR011770; KEGG: aae:aq_916 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: dihydrodipicolinate reductase; SPTR: dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase, bacterial/plant; PFAM: dihydrodipicolinate reductase, N-terminus; dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase
YP_004280745.1	COGs: COG0106 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; InterPro IPR006062: IPR006063; KEGG: pmx:PERMA_1646 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imid azole-4-carboxamide isomerase; PFAM: histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_004280746.1	COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: aae:aq_1875 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_004280747.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: pmx:PERMA_1585 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_004280748.1	COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: sul:SYO3AOP1_0046 ammonium transporter; PFAM: Ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter Family; TIGRFAM: ammonium transporter
YP_004280749.1	KEGG: aae:aq_113 hypothetical protein; SPTR:  uncharacterized protein
YP_004280750.1	COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: dae:Dtox_1033 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted; SPTR: Diguanylate phosphodiesterase; PFAM: EAL domain
YP_004280751.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123: IPR004552; KEGG: tal:Thal_0967 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: phospholipid/glycerol acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004280752.1	COGs: COG0761 Penicillin tolerance protein; HAMAP: LytB protein; InterPro IPR003451; KEGG: pmx:PERMA_0082 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: LytB protein; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_004280753.1	COGs: COG0539 ribosomal protein S1; InterPro IPR003029; KEGG: dal:Dalk_0933 ribosomal protein S1; PFAM: ribosomal protein S1, RNA binding domain; SPTR: 30S ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_004280754.1	COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: trq:TRQ2_0694 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_004280755.1	HAMAP: Uncharacterised protein family UPF0090, bacteria; InterPro IPR003728: IPR020790; KEGG: dth:DICTH_1080 YlxS; PFAM: Uncharacterised protein family UPF0090; SPTR: ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779
YP_004280756.1	COGs: COG0195 transcription elongation factor; InterPro IPR013735: IPR003029: IPR010213; KEGG: pmx:PERMA_0236 transcription termination factor NusA; PFAM: transcription factor NusA, N-terminal; ribosomal protein S1, RNA binding domain; SPTR: transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA
YP_004280757.1	InterPro IPR007393; KEGG: ppd:Ppro_0962 hypothetical protein; PFAM: Protein of unknown function DUF448; SPTR: LSU ribosomal protein L7AE; PFAM: Protein of unknown function (DUF448)
YP_004280758.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: mif:Metin_0950 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; PFAM: pfkB family carbohydrate kinase
YP_004280759.1	COGs: COG0426 flavoprotein; KEGG: tko:TK1605 metallo-beta-lactamase superfamily hydrolase; SPTR: V-ATPase proteolipid; PFAM: Metallo-beta-lactamase superfamily
YP_004280760.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: pho:PH1970 chemoreceptor protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: 261aa long hypothetical chemoreceptor protein; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004280761.1	COGs: COG0481 Membrane GTPase LepA; HAMAP: GTP-binding protein LepA; InterPro IPR000795: IPR004161: IPR000640: IPR013842: IPR 005225: IPR006297; KEGG: chy:CHY_0410 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_004280762.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: aae:aq_1455 hypothetical protein; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR:  uncharacterized protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004280763.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: pmx:PERMA_0739 chemotactic response regulator CheY; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Chemotactic response regulator CheY; PFAM: Response regulator receiver domain
YP_004280764.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545: IPR001789; KEGG: pmx:PERMA_0740 chemotactic response regulator CheV; PFAM: Signal transduction response regulator, receiver domain; CheW-like protein; SMART: Signal transduction response regulator, receiver domain; CheW-like protein; SPTR: Chemotactic response regulator CheV; PFAM: CheW-like domain; Response regulator receiver domain
YP_004280765.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: pmx:PERMA_0738 methyl-accepting chemotaxis protein signaling domain protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; SPTR: methyl-accepting chemotaxis protein signaling domain protein; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004280766.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: nis:NIS_0603 purine-binding chemotaxis protein CheW; PFAM: CheW-like protein; SMART: CheW-like protein; SPTR: Purine-binding chemotaxis protein CheW; PFAM: CheW-like domain
YP_004280767.1	COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterPro IPR008207: IPR004105: IPR003594: IPR002545; KEGG: pmx:PERMA_0742 chemotaxis protein CheA; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; SPTR: Chemotaxis protein CheA; PFAM: CheW-like domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain
YP_004280768.1	KEGG: pmx:PERMA_0743  myosin-2 heavy chain, non muscle; SPTR:  myosin-2 heavy chain, non muscle
YP_004280769.1	PFAM: AT hook motif
YP_004280770.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004280771.1	InterPro IPR001163; KEGG: dae:Dtox_3018 RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain; SPTR: RNA chaperone Hfq; PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq
YP_004280772.1	InterPro IPR001163: IPR005001; KEGG: saf:SULAZ_0969 RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain; SPTR: RNA chaperone Hfq; TIGRFAM: Host factor Hfq; PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq
YP_004280773.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR005481: IPR005479: IPR005482: IPR004549; KEGG: saf:SULAZ_0507 acetyl-CoA carboxylase, biotin carboxylase subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Biotin carboxylase; SPTR: Acetyl-CoA carboxylase, biotin carboxylase subunit; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_004280774.1	COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR000089: IPR001249; KEGG: pmx:PERMA_1083 acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin/lipoyl attachment; SPTR: Acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_004280775.1	COGs: COG0231 translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: translation elongation factor P; InterPro IPR013185: IPR001059: IPR015365: IPR011768; KEGG: pmx:PERMA_1082 elongation factor P; PFAM: Elongation factor P, C-terminal; translation elongation factor, KOW-like; translation elongation factor P/YeiP, central; SPTR: Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P
YP_004280776.1	KEGG: pmx:PERMA_0415 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_004280777.1	COGs: COG0041 phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: pmx:PERMA_0641 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: phosphoribosylaminoimidazole carboxylase; SPTR: phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein
YP_004280778.1	COGs: COG1578 conserved hypothetical protein; InterPro IPR002791; KEGG: aae:aq_893 hypothetical protein; PFAM: Domain of unknown function DUF89; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF89
YP_004280779.1	COGs: COG0009  translation factor (SUA5); InterPro IPR006070: IPR004388; KEGG: cpy:Cphy_3747 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_004280780.1	COGs: COG0223 methionyl-tRNA formyltransferase; HAMAP: methionyl-tRNA formyltransferase; InterPro IPR002376: IPR005793: IPR005794; KEGG: pmx:PERMA_0584 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: methionyl-tRNA formyltransferase; SPTR: methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase
YP_004280781.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: hth:HTH_1439 transcriptional regulator, Fur family; PFAM: Ferric-uptake regulator; SPTR: transcriptional regulator, Fur family; PFAM: Ferric uptake regulator family
YP_004280782.1	COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR006674: IPR003607; KEGG: fjo:Fjoh_2905 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: phosphohydrolase; PFAM: HD domain
YP_004280783.1	InterPro IPR018449; KEGG: sat:SYN_00800 ferridoxin; PFAM: NIL domain; SPTR: Ferridoxin; PFAM: 4Fe-4S binding domain; NIL domain
YP_004280784.1	KEGG: aag:AaeL_AAEL003638 sodium/shloride dependent amino acid transporter; SPTR: transporter
YP_004280785.1	COGs: COG0379 Quinolinate synthase; HAMAP: Quinolinate synthase A; InterPro IPR003473; KEGG: ddf:DEFDS_0483 quinolinate synthase subunit A; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthase, subunit A; TIGRFAM: Quinolinate synthetase A; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit
YP_004280786.1	COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase [glutamine-hydrolyzing]; InterPro IPR000991: IPR001674: IPR004739; KEGG: pmx:PERMA_0029 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: GMP synthase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; Asparagine synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit
YP_004280788.1	KEGG: cdf:CD2890 hypothetical protein; SPTR: Hypothetical phage protein
YP_004280789.1	KEGG: meh:M301_2747 AsmA family protein; SPTR: AsmA family protein
YP_004280790.1	KEGG: bhy:BHWA1_01883 TPR domain-containing protein; SPTR: riboflavin biosynthesis protein RibD
YP_004280791.1	COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: hth:HTH_1582 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR:  uncharacterized protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family
YP_004280792.1	COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: tte:TTE1450 DNA uptake Rossmann fold nucleotide-binding protein; PFAM: DNA recombination-mediator protein A; SPTR: Predicted Rossmann-fold nucleotide-binding protein involved in DNA uptake; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA
YP_004280793.1	COGs: COG0681 Signal peptidase I; InterPro IPR019759: IPR019533: IPR000223; KEGG: pmx:PERMA_0639 signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region; peptidase S26, conserved region; PRIAM: Signal peptidase I; SPTR: Signal peptidase I; TIGRFAM: peptidase S26A, signal peptidase I; manually curated; PFAM: peptidase S26; peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type
YP_004280794.1	COGs: COG3137  salt-induced outer membrane protein; InterPro IPR007433; KEGG: pmx:PERMA_1693 hypothetical protein; PFAM: Protein of unknown function DUF481; SPTR:  salt-induced outer membrane protein-like protein; PFAM: Protein of unknown function, DUF481
YP_004280795.1	KEGG: pfd:PFDG_00198 hypothetical protein; SPTR:  uncharacterized protein
YP_004280796.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197: IPR018768: IPR006638; KEGG: gur:Gura_0300 radical SAM domain-containing protein; PFAM: Protein of unknown function DUF2344; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2344); Radical SAM superfamily
YP_004280797.1	COGs: COG1530 ribonuclease G and E; InterPro IPR019307: IPR004659; KEGG: ddf:DEFDS_0023 ribonuclease E and G; PFAM: RNA-binding protein AU-1/ribonuclease E/G; SPTR: ribonuclease E and G; TIGRFAM: ribonuclease E/G; PFAM: ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_004280798.1	COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: hth:HTH_1429 DNA uptake lipoprotein; SPTR: DNA uptake lipoprotein; TIGRFAM: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO
YP_004280799.1	COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: lsl:LSL_0504 iojap-related protein; PFAM: Iojap-related protein; SPTR: Iojap-related protein; TIGRFAM: Iojap-related protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein
YP_004280800.1	COGs: COG1576 conserved hypothetical protein; HAMAP: SPOUT methyltransferase, predicted; InterPro IPR003742; KEGG: pca:Pcar_2576 hypothetical protein; PFAM: SPOUT methyltransferase, predicted; SPTR: ribosomal RNA large subunit methyltransferase H; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH
YP_004280801.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197: IPR006638; KEGG: ava:Ava_3912 nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM superfamily; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB
YP_004280802.1	COGs: COG1242 Fe-S oxidoreductase; InterPro IPR007197: IPR005911: IPR006638; KEGG: saf:SULAZ_1702 radical SAM protein, family; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM protein, family; TIGRFAM: Conserved hypothetical protein CHP01212; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family
YP_004280803.1	KEGG: ate:Athe_1048 hypothetical protein; SPTR: ribosome maturation factor rimP
YP_004280804.1	COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: saf:SULAZ_1542 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004280805.1	COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: aae:aq_775 hypothetical protein; PFAM: Uncharacterised protein family YceG-like; SPTR:  uncharacterized protein; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family
YP_004280806.1	COGs: COG2074 2-phosphoglycerate kinase; InterPro IPR005144; KEGG: msv:Mesil_1353 ATP-cone domain protein; PFAM: ATP-cone; SPTR: 2-phosphoglycerate kinase; PFAM: ATP cone domain; Zeta toxin
YP_004280807.1	COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; HAMAP: Camphor resistance CrcB protein; InterPro IPR003691; KEGG: sun:SUN_1279 camphor resistance protein CrcB; PFAM: Camphor resistance CrcB protein; SPTR: Protein crcB homolog; TIGRFAM: Camphor resistance CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein
YP_004280808.1	COGs: COG2078 conserved hypothetical protein; HAMAP: AMMECR1-domain protein; InterPro IPR002733; KEGG: tga:TGAM_1450 hypothetical protein; PFAM: AMMECR1; SPTR: Protein TGAM_1450; TIGRFAM: AMMECR1; PFAM: AMMECR1; TIGRFAM: uncharacterized protein, PH0010 family
YP_004280809.1	COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: tai:Taci_0751 peptidase M50; PFAM: peptidase M50; SPTR: peptidase M50; PFAM: peptidase family M50
YP_004280810.1	COGs: COG0145 N-methylhydantoinase A/acetone carboxylase beta subunit; InterPro IPR008040: IPR002821; KEGG: pmx:PERMA_1472 hydantoin utilization protein A (ORF2); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: Hydantoin utilization protein A (ORF2); PFAM: Hydantoinase/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region
YP_004280811.1	KEGG: taf:THA_599 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004280812.1	InterPro IPR014942; KEGG: aae:aq_aa25 hypothetical protein; PFAM: Protein of unknown function DUF1814; SPTR: Uncharacterized protein aq_aa25; PFAM: Domain of unknown function (DUF1814)
YP_004280813.1	COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit; InterPro IPR003692; KEGG: pmx:PERMA_1470 5-oxoprolinase (5-oxo-L-prolinase) (pyroglutamase) (5-OPase); PFAM: Hydantoinase B/oxoprolinase; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: 5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase); PFAM: Hydantoinase B/oxoprolinase
YP_004280814.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: toc:Toce_1758 ATP-dependent DNA helicase PcrA; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase
YP_004280815.1	COGs: COG0075 serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: sul:SYO3AOP1_1504 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: serine--glyoxylate transaminase; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V
YP_004280816.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: nam:NAMH_0330 fkbp-type peptidyl-prolyl cis-trans isomerase SlyD; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004280817.1	COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: pmx:PERMA_1659 flavin reductase domain protein, FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SPTR: Flavin reductase domain protein, FMN-binding; PFAM: Flavin reductase like domain
YP_004280818.1	InterPro IPR007637; KEGG: mja:MJ_0600 type II R/M system restriction enzyme 2; PFAM: Restriction endonuclease, type II, DpmII-like; PRIAM: type II site-specific deoxyribonuclease; SPTR: Restriction endonuclease R.IB; PFAM: DpnII restriction endonuclease
YP_004280819.1	COGs: COG0863 DNA modification methylase; InterPro IPR002941; KEGG: emi:Emin_0686 DNA methylase N-4/N-6 domain-containing protein; PFAM: DNA methylase N-4/N-6; SPTR: DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase
YP_004280820.1	COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR001754: IPR014732; KEGG: sde:Sde_2141 orotidine-5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1
YP_004280821.1	COGs: COG0460 Homoserine dehydrogenase; InterPro IPR005106: IPR001342: IPR002912; KEGG: tye:THEYE_A1986 homoserine dehydrogenase (HDH): ThrA, MetL; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; SPTR: Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase; ACT domain
YP_004280822.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: tye:THEYE_A1985 hypothetical aminotransferase YfdZ; PFAM: Aminotransferase, class I/II; PRIAM: LL-diaminopimelate aminotransferase; SPTR: Hypothetical aminotransferase YfdZ; PFAM: Aminotransferase class I and II
YP_004280823.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: tye:THEYE_A1173 ABC-type Fe3+-siderophores transport system, periplasmic component, PFAM: Periplasmic binding protein; SPTR: ABC-type Fe3+-siderophores transport system, periplasmic component, ; manually curated; PFAM: Periplasmic binding protein
YP_004280824.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: glo:Glov_3558 transport system permease; PFAM: Bacterial transport system permease; SPTR: transport system permease; PFAM: FecCD transport family
YP_004280825.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: ton:TON_0298 ABC-type iron(III)-siderophore transport system, ATPase component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC-type iron(III)-siderophore transport system, ATPase component; PFAM: ABC transporter
YP_004280826.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: pca:Pcar_0454 TonB-dependent outer membrane receptor for cobalamin and Fe transport; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent outer membrane receptor for cobalamin and Fe transport; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004280827.1	COGs: COG2301 Citrate lyase beta subunit; InterPro IPR005000; KEGG: cph:Cpha266_2198 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; PRIAM: Citryl-CoA lyase; SPTR: HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family
YP_004280828.1	COGs: COG0583 transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: tye:THEYE_A0898 transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_004280829.1	KEGG: sse:Ssed_4019 SSS family solute/sodium (Na+) symporter; SPTR: Chromate transport protein ChrA
YP_004280830.1	InterPro IPR005500; KEGG: rxy:Rxyl_2442 hypothetical protein; PFAM: Protein of unknown function DUF309; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF309)
YP_004280831.1	COGs: COG0241 histidinol phosphatase and related phosphatase; InterPro IPR006543: IPR006549; KEGG: tai:Taci_1706 hydrolase, HAD-superfamily, subfamily IIIA; PRIAM: histidinol-phosphatase; SPTR: D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain; histidinol-phosphatase
YP_004280832.1	COGs: COG0585 conserved hypothetical protein; HAMAP: Pseudouridine synthase, TruD; InterPro IPR001656; KEGG: pmx:PERMA_0571 tRNA pseudouridine synthase D; PFAM: Pseudouridine synthase, TruD; SPTR: tRNA pseudouridine synthase D; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: tRNA pseudouridine synthase, TruD family
YP_004280833.1	COGs: COG3434 signal transduction protein containing EAL and modified HD-GYP domains; InterPro IPR013976; KEGG: aae:aq_478 hypothetical protein; PFAM: Metal-dependent hydrolase HDOD; SPTR:  uncharacterized protein; PFAM: HDOD domain
YP_004280834.1	COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR006027: IPR001678: IPR004573: IPR011023; KEGG: cce:Ccel_1532 sun protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; SPTR: Sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; Nop2p; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; NOL1/NOP2/sun family  RNA methylase
YP_004280835.1	COGs: COG1936 nucleotide kinase (related to CMP and AMP kinase); InterPro IPR000623; KEGG: mmx:MmarC6_1136 hypothetical protein; PFAM: Shikimate kinase; PRIAM: Adenylate kinase; SPTR:  adenylate kinase; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004280836.1	COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterPro IPR005481: IPR005479: IPR005480: IPR011607: IPR 006275; KEGG: fpl:Ferp_0317 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like; PRIAM: Carbamoyl-phosphate synthase (ammonia); SPTR: Carbamoyl-phosphate synthase, large subunit; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit
YP_004280837.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004820: IPR011914: IPR004821; KEGG: aae:aq_185 glycerol-3-phosphate cytidyltransferase; PFAM: Cytidylyltransferase; SPTR: Glycerol-3-phosphate cytidyltransferase; TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain
YP_004280838.1	COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; HAMAP:methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase,TrmFO; InterPro IPR002218: IPR004417; KEGG: aae:aq_691 tRNA (uracil-5-)-methyltransferase Gid; PFAM: Glucose-inhibited division protein A-related; PRIAM:methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR:methylenetetrahydrofolate--tRNA-(uracil-5-)-me thyltransferasetrmFO; TIGRFAM:methylenetetrahydrofolate--tRNA-(uracil-5-) -methyltransferase,TrmFO; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase
YP_004280839.1	InterPro IPR018392: IPR002482; KEGG: hor:Hore_10980 peptidase M23B; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: peptidase M23B; PFAM: LysM domain
YP_004280840.1	COGs: COG0126 3-phosphoglycerate kinase; HAMAP: phosphoglycerate kinase; InterPro IPR001576; KEGG: dtu:Dtur_1131 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: phosphoglycerate kinase; PFAM: phosphoglycerate kinase
YP_004280841.1	COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; InterPro IPR004820: IPR004821: IPR005248; KEGG: tal:Thal_0519 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain
YP_004280842.1	KEGG: saf:SULAZ_0945 hypothetical protein; SPTR:  membrane protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_004280843.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: aae:aq_1899 dolichol-phosphate mannosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Dolichol-phosphate mannosyltransferase; PFAM: Glycosyl transferase family 2
YP_004280844.1	COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: pmx:PERMA_0510  dolichyl-phosphate-mannose-protein mannosyltransferase; PFAM: Glycosyl transferase, family 39; SPTR:  dolichyl-phosphate-mannose-protein mannosyltransferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_004280845.1	KEGG: sat:SYN_03012 hypothetical protein; SPTR:  uncharacterized protein
YP_004280846.1	COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: aae:aq_1236 hypothetical protein; PFAM: Glycosyl transferase, family 39; SPTR:  uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_004280847.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: pab:PAB0801 NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent deacetylase; PFAM: Sir2 family
YP_004280848.1	COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: dat:HRM2_43600  metal-dependent hydrolase; SPTR:  Metal-dependent hydrolase; PFAM: Metallo-beta-lactamase superfamily
YP_004280849.1	COGs: COG0541 Signal recognition particle GTPase; InterPro IPR013822: IPR000897: IPR004125: IPR004780: IPR 003593; KEGG: tjr:TherJR_2051 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle protein; TIGRFAM: Signal recognition particle, SRP; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_004280850.1	KEGG: saf:SULAZ_1706  transposase; SPTR:  transposase; manually curated; PFAM: Integrase core domain
YP_004280851.1	COGs: COG0176 transaldolase; HAMAP: transaldolase; InterPro IPR001585: IPR004731; KEGG: aae:aq_119  translaldolase; PFAM: transaldolase; SPTR: Probable transaldolase; TIGRFAM: transaldolase C; PFAM: transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family
YP_004280852.1	InterPro IPR007404; KEGG: dds:Ddes_1832 membrane-bound metal-dependent hydrolase; PFAM: Protein of unknown function DUF457, transmembrane; SPTR:  uncharacterized protein; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457)
YP_004280853.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sul:SYO3AOP1_1739 beta-lactamase domain protein; SPTR:  metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily
YP_004280854.1	COGs: COG1432 conserved hypothetical protein; KEGG: pmx:PERMA_0982 RtsE; SPTR: RtsE; PFAM: Protein of unknown function DUF88; TIGRFAM: conserved hypothetical protein TIGR00288
YP_004280855.1	COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: nam:NAMH_0349 hypothetical protein; PFAM: Cation efflux protein; SPTR:  uncharacterized protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: cation diffusion facilitator family transporter
YP_004280856.1	COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR004108: IPR013352; KEGG: tye:THEYE_A1726 hydrogenase; PFAM: Iron hydrogenase, large subunit, C-terminal; PRIAM: Ferredoxin hydrogenase; SPTR: Hydrogenase; TIGRFAM: Iron hydrogenase, subset; PFAM: Iron only hydrogenase large subunit, C-terminal domain; TIGRFAM: hydrogenases, Fe-only
YP_004280857.1	InterPro IPR003149: IPR006311; KEGG: she:Shewmr4_3251 iron hydrogenase, small subunit; PFAM: Iron hydrogenase, small subunit-like; SPTR:  periplasmic [Fe] hydrogenase, small subunit; PFAM: Iron hydrogenase small subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004280858.1	COGs: COG2864 Cytochrome b subunit of formate dehydrogenase; KEGG: shl:Shal_1410 formate dehydrogenase, SPTR:  formate dehydrogenase; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: formate dehydrogenase, gamma subunit
YP_004280859.1	COGs: COG1027 Aspartate ammonia-lyase; InterPro IPR000362: IPR018951; KEGG: pth:PTH_0981 aspartate ammonia-lyase; PFAM: Fumarate lyase; Fumarase C, C-terminal; PRIAM: Fumarate hydratase; SPTR: Aspartate ammonia-lyase; PFAM: Lyase
YP_004280860.1	COGs: COG1160 GTPase; InterPro IPR002917: IPR005225; KEGG: sat:SYN_01372 GTPase; PFAM: GTP-binding protein, HSR1-related; SPTR: GTPase; TIGRFAM: Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain
YP_004280861.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197: IPR010722: IPR006638; KEGG: swo:Swol_1022 thiamine biosynthesis protein ThiH; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH
YP_004280862.1	KEGG: mhu:Mhun_0497 hypothetical protein; SPTR: polyribonucleotide nucleotidyltransferase
YP_004280863.1	COGs: COG0502 Biotin synthase; InterPro IPR007197: IPR006638; KEGG: aar:Acear_2037 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Fe-hydrogenase assembly protein; PFAM: Radical SAM superfamily
YP_004280864.1	InterPro IPR007712; KEGG: pca:Pcar_1777 cytotoxic translational repressor of toxin-antitoxin stability system; PFAM: Plasmid stabilisation system; SPTR: Toxin-antitoxin system, toxin component, RelE family; PFAM: Plasmid stabilisation system protein
YP_004280865.1	KEGG: pca:Pcar_1778 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Ribbon-helix-helix protein, copG family
YP_004280866.1	COGs: COG0433 ATPase; InterPro IPR018538; KEGG: mru:mru_1104 ATPase; PFAM: HerA-ATP synthase, barrel domain; SPTR: ATPase; PFAM: HAS barrel domain; Domain of unknown function DUF87; Bacterial protein of unknown function (DUF853)
YP_004280867.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: aar:Acear_0771 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004280868.1	COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; InterPro IPR007080: IPR000722: IPR007066: IPR007083: IPR 007081: IPR006102: IPR012754: IPR006592; KEGG: saf:SULAZ_1762 DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_004280869.1	COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; InterPro IPR007644: IPR007642: IPR007645: IPR019462: IPR 007120: IPR007641: IPR010243; KEGG: pmx:PERMA_1189 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit
YP_004280870.1	COGs: COG0222 ribosomal protein L7/L12; HAMAP: ribosomal protein L7/L12; InterPro IPR013823: IPR000206; KEGG: pmx:PERMA_1188 50S ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_004280871.1	COGs: COG0244 ribosomal protein L10; HAMAP: 50S ribosomal protein L10; InterPro IPR001790; KEGG: dol:Dole_0700 ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: 50S ribosomal protein L10; PFAM: ribosomal protein L10
YP_004280872.1	COGs: COG0081 ribosomal protein L1; InterPro IPR002143: IPR005878; KEGG: pmx:PERMA_1186 50S ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: ribosomal protein; TIGRFAM: ribosomal protein L1, bacterial-type; PFAM: ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_004280873.1	COGs: COG0080 ribosomal protein L11; InterPro IPR020784: IPR020783: IPR006519: IPR000911; KEGG: trq:TRQ2_0481 50S ribosomal protein L11; PFAM: ribosomal protein L11, C-terminal; ribosomal protein L11, N-terminal; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11, bacterial-type; PFAM: ribosomal protein L11, RNA binding domain; ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11
YP_004280874.1	COGs: COG0250 transcription antiterminator; InterPro IPR006645: IPR005824: IPR001062; KEGG: pmx:PERMA_1184 transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein, NusG, N-terminal; KOW; SMART: transcription antitermination protein, NusG, N-terminal; KOW; SPTR: transcription antitermination protein nusG; TIGRFAM: transcription antitermination protein, NusG; PFAM: transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG
YP_004280875.1	InterPro IPR001901: IPR005807; KEGG: saf:SULAZ_1769 preprotein translocase, SecE subunit; PFAM: Protein secE/sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_004280876.1	COGs: COG0267 ribosomal protein L33; HAMAP: ribosomal protein L33; InterPro IPR001705; KEGG: ols:Olsu_1628 LSU ribosomal protein L33P; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_004280877.1	COGs: COG0050 GTPase - translation elongation factors; InterPro IPR000795: IPR004161: IPR004160: IPR004541: IPR 005225; KEGG: toc:Toce_2107 translation elongation factor 1A (EF-1A/EF-Tu); PFAM: Protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFTu/EF1A, C-terminal; SPTR: translation elongation factor 1A (EF-1A/EF-Tu); TIGRFAM: translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_004280878.1	KEGG: psl:Psta_4092 hypothetical protein; SPTR:  uncharacterized protein
YP_004280879.1	COGs: COG1544 ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: efa:EF1764 ribosomal subunit interface protein; PFAM: ribosomal protein S30Ae/sigma 54 modulation protein; SPTR: ribosomal subunit interface protein; TIGRFAM: ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_004280880.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR008532; KEGG: swo:Swol_1163 hypothetical protein; PFAM: Protein of unknown function DUF814; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF814); Thiamine biosynthesis protein (ThiI)
YP_004280881.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: shc:Shell_0130 UspA domain protein; PFAM: UspA; SPTR:  uncharacterized protein; PFAM: Universal stress protein family
YP_004280882.1	KEGG: shc:Shell_0130 UspA domain protein; SPTR:  uncharacterized protein; PFAM: Universal stress protein family
YP_004280883.1	COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: aba:Acid345_1808 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase
YP_004280884.1	COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: dap:Dacet_2341 thiamine pyrophosphate protein domain protein TPP-binding protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: Thiamine pyrophosphate protein domain protein TPP-binding protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_004280885.1	COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880: IPR005476; KEGG: pca:Pcar_1030 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; transketolase, C-terminal; PRIAM: 2-oxoglutarate synthase; SPTR: 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit; PFAM: domain; transketolase, C-terminal domain
YP_004280886.1	KEGG: tai:Taci_0967 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR:  pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit
YP_004280887.1	COGs: COG0074 succinyl-CoA synthetase alpha subunit; InterPro IPR003781: IPR005811: IPR005810; KEGG: aae:aq_1622 succinyl-CoA ligase alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: succinyl-CoA ligase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit
YP_004280888.1	COGs: COG0045 succinyl-CoA synthetase beta subunit; HAMAP: succinyl-CoA synthetase, beta subunit; InterPro IPR013650: IPR005811: IPR005809; KEGG: saf:SULAZ_0638 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit
YP_004280889.1	COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR003660: IPR006674: IPR000160: IPR003607; KEGG: sua:Saut_1723 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; HAMP linker domain; Diguanylate cyclase, predicted; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; PFAM: HAMP domain; HD domain; GGDEF domain
YP_004280890.1	KEGG: zin:ZICARI_168  glutamyl-tRNA(Gln) amidotransferase subunit B; SPTR:  uncharacterized protein
YP_004280891.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: aae:aq_1639 oxido/reductase iron sulfur protein; PFAM: Cysteine-rich domain; SPTR: Oxido/reductase iron sulfur protein; PFAM: Cysteine-rich domain
YP_004280892.1	COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR001433: IPR019480; KEGG: pmx:PERMA_1386 dihydroorotate dehydrogenase electron transfer subunit; PFAM: dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD/NAD(P)-binding; SPTR: dihydroorotate dehydrogenase electron transfer subunit; PFAM: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain
YP_004280893.1	HAMAP: DNA-directed RNA polymerase, omega subunit; InterPro IPR006110: IPR003716; KEGG: pmx:PERMA_1423 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; SPTR: RNA polymerase omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit
YP_004280894.1	COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR008144: IPR017665: IPR008145; KEGG: toc:Toce_1022 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_004280895.1	COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527: IPR013551: IPR005229; KEGG: cob:COB47_1492 hypothetical protein; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255
YP_004280896.1	KEGG: gbm:Gbem_2510 hypothetical protein; SPTR:  uncharacterized protein; PFAM: SurA N-terminal domain
YP_004280897.1	InterPro IPR001440: IPR019734; KEGG: saf:SULAZ_1547 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein
YP_004280898.1	COGs: COG0184 ribosomal protein S15P/S13E; InterPro IPR000589: IPR005290; KEGG: chy:CHY_1760 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial-type; PFAM: ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_004280899.1	COGs: COG1185 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: polyribonucleotide nucleotidyltransferase; InterPro IPR001247: IPR015847: IPR015848: IPR018111: IPR 003029: IPR012162: IPR004087; KEGG: pmx:PERMA_0242 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; ribosomal protein S1, RNA binding domain; PRIAM: polyribonucleotide nucleotidyltransferase; SPTR: polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_004280900.1	COGs: COG0756 dUTPase; InterPro IPR008180; KEGG: tva:TVAG_379830 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase domain; SPTR: deoxyuridine 5'-triphosphate nucleotidohydrolase family; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
YP_004280901.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: aae:aq_1327 hypothetical protein; PFAM: peptidase S54, rhomboid; SPTR:  uncharacterized protein; PFAM: Rhomboid family
YP_004280902.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891: IPR013709: IPR005671; KEGG: aae:aq_2090 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: 2-isopropylmalate synthase; SPTR: 2-isopropylmalate synthase; TIGRFAM: Bacterial 2-isopropylmalate synthase; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type
YP_004280903.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004280904.1	KEGG: pjd:Pjdr2_5607 histidine kinase; SPTR: histidine kinase
YP_004280905.1	COGs: COG0048 ribosomal protein S12; InterPro IPR006032: IPR005679; KEGG: pmx:PERMA_1191 ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial-type; PFAM: ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_004280906.1	COGs: COG0049 ribosomal protein S7; InterPro IPR000235: IPR005717; KEGG: adg:Adeg_1528 ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7, bacterial-type; PFAM: ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_004280907.1	COGs: COG0480 translation elongation factors (GTPase); InterPro IPR000795: IPR004161: IPR005517: IPR000640: IPR 004540: IPR005225; KEGG: ddf:DEFDS_1775 translation elongation factor G; PFAM: Protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal; SPTR: translation elongation factor G; TIGRFAM: translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_004280908.1	COGs: COG0050 GTPase - translation elongation factors; InterPro IPR000795: IPR004161: IPR004160: IPR004541: IPR 005225; KEGG: toc:Toce_2107 translation elongation factor 1A (EF-1A/EF-Tu); PFAM: Protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFTu/EF1A, C-terminal; SPTR: translation elongation factor 1A (EF-1A/EF-Tu); TIGRFAM: translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_004280909.1	COGs: COG0051 ribosomal protein S10; HAMAP: ribosomal protein S10 subgroup; InterPro IPR001848: IPR005731; KEGG: pmx:PERMA_1195 30S ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10 subgroup; PFAM: ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_004280910.1	COGs: COG0087 ribosomal protein L3; InterPro IPR000597: IPR019927; KEGG: ddf:DEFDS_1772 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: ribosomal protein L3, bacterial/organelle-type; PFAM: ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_004280911.1	COGs: COG0088 ribosomal protein L4; InterPro IPR002136; KEGG: pmx:PERMA_1197 ribosomal protein, L4/L1 family; PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1 family
YP_004280912.1	COGs: COG0089 ribosomal protein L23; InterPro IPR013025; KEGG: saf:SULAZ_1754 50S ribosomal protein L23; PFAM: ribosomal protein L25/L23; SPTR: ribosomal protein L23; PFAM: ribosomal protein L23
YP_004280913.1	COGs: COG0090 ribosomal protein L2; InterPro IPR002171: IPR005880; KEGG: pmx:PERMA_1199 50S ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2, bacterial-type; PFAM: ribosomal Proteins L2, RNA binding domain; ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_004280914.1	COGs: COG0185 ribosomal protein S19; InterPro IPR002222: IPR005732; KEGG: sul:SYO3AOP1_0287 30S ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial-type; PFAM: ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_004280915.1	COGs: COG0091 ribosomal protein L22; InterPro IPR001063: IPR005727; KEGG: adg:Adeg_1519 ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22, bacterial-type; PFAM: ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_004280916.1	COGs: COG0092 ribosomal protein S3; InterPro IPR008282: IPR004044: IPR001351: IPR005704; KEGG: pmx:PERMA_1202 ribosomal protein S3; PFAM: ribosomal protein S3, C-terminal; ribosomal protein S3, N-terminal; K Homology, type 2; SPTR: 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3, bacterial; PFAM: KH domain; ribosomal protein S3, C-terminal domain; ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; ribosomal protein S3, eukaryotic/archaeal type
YP_004280917.1	COGs: COG0197 ribosomal protein L16/L10E; HAMAP: ribosomal protein L16; InterPro IPR016180: IPR000114; KEGG: cob:COB47_0846 ribosomal protein L16; PFAM: ribosomal protein L10e/L16; SPTR: ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_004280918.1	InterPro IPR001854; KEGG: cth:Cthe_2911 50S ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_004280919.1	COGs: COG0186 ribosomal protein S17; InterPro IPR000266: IPR019984; KEGG: slp:Slip_2228 30S ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: ribosomal protein S17, bacterial-type; PFAM: ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_004280920.1	COGs: COG0093 ribosomal protein L14; InterPro IPR000218: IPR005745; KEGG: hth:HTH_0712 ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14, bacterial-type; PFAM: ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_004280921.1	COGs: COG0198 ribosomal protein L24; InterPro IPR005824: IPR003256; KEGG: aac:Aaci_2700 50S ribosomal protein L24; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_004280922.1	COGs: COG0094 ribosomal protein L5; KEGG: pmx:PERMA_1208 50S ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; ribosomal protein L5
YP_004280923.1	COGs: COG0199 ribosomal protein S14; InterPro IPR001209; KEGG: chy:CHY_2296 30S ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: ribosomal protein S14p/S29e; PFAM: ribosomal protein S14p/S29e
YP_004280924.1	COGs: COG0096 ribosomal protein S8; InterPro IPR000630; KEGG: adg:Adeg_1510 ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: ribosomal protein S8; PFAM: ribosomal protein S8
YP_004280925.1	COGs: COG0097 ribosomal protein L6P/L9E; InterPro IPR020040: IPR019906; KEGG: saf:SULAZ_1740 ribosomal protein L6; PFAM: ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial-type; PFAM: ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_004280926.1	COGs: COG0256 ribosomal protein L18; InterPro IPR005484: IPR004389; KEGG: ddf:DEFDS_1756 50S ribosomal protein L18; PFAM: ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18, bacterial; PFAM: ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_004280927.1	COGs: COG0098 ribosomal protein S5; InterPro IPR013810: IPR005324: IPR005712; KEGG: hor:Hore_01340 ribosomal protein S5; PFAM: ribosomal protein S5, N-terminal; ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5, bacterial-type; PFAM: ribosomal protein S5, N-terminal domain; ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_004280928.1	InterPro IPR000517: IPR005996; KEGG: vpr:Vpar_1476 ribosomal protein L30; PFAM: ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30, bacterial-type; PFAM: ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle
YP_004280929.1	COGs: COG0200 ribosomal protein L15; InterPro IPR005749; KEGG: tte:TTE2273 ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15, bacterial-type; PFAM: ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_004280930.1	COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: gsu:GSU2837 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase subunit secY; TIGRFAM: SecY protein; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit
YP_004280931.1	COGs: COG0563 Adenylate kinase and related kinase; HAMAP: Adenylate kinase; InterPro IPR000850: IPR006259; KEGG: lbf:LBF_1892 adenylate kinase; PFAM: Adenylate kinase; SPTR: Adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases
YP_004280932.1	COGs: COG0024 methionine aminopeptidase; InterPro IPR000994: IPR002467; KEGG: dsa:Desal_1206 methionine aminopeptidase, type I; PFAM: peptidase M24, structural domain; PRIAM: methionyl aminopeptidase; SPTR: methionine aminopeptidase; TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_004280933.1	COGs: COG0361 translation initiation factor 1 (IF-1); HAMAP: translation initiation factor IF-1; InterPro IPR006196: IPR004368; KEGG: slp:Slip_2213 translation initiation factor IF-1; PFAM: S1, IF1 type; SPTR: translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_004280934.1	HAMAP: ribosomal protein L36; InterPro IPR000473; KEGG: dds:Ddes_0682 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_004280935.1	COGs: COG0099 ribosomal protein S13; InterPro IPR001892: IPR019980; KEGG: tai:Taci_1158 ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: ribosomal protein S13, bacterial-type; PFAM: ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_004280936.1	COGs: COG0100 ribosomal protein S11; InterPro IPR001971: IPR019981; KEGG: pmx:PERMA_1222 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: ribosomal protein S11, bacterial-type; PFAM: ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_004280937.1	COGs: COG0522 ribosomal protein S4 and related protein; InterPro IPR001912: IPR002942: IPR005709; KEGG: nam:NAMH_1696 30S ribosomal protein S4; PFAM: RNA-binding S4; ribosomal protein S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4, bacterial-type; PFAM: ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_004280938.1	COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterPro IPR011261: IPR011262: IPR011260: IPR011773: IPR 011263; KEGG: aae:aq_070 DNA-directed RNA polymerase subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
YP_004280939.1	COGs: COG0203 ribosomal protein L17; HAMAP: ribosomal protein L17; InterPro IPR000456; KEGG: ccb:Clocel_3703 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_004280940.1	InterPro IPR005527; KEGG: dtu:Dtur_1398 cell division topological specificity factor MinE; PFAM: septum formation topological specificity factor MinE; SPTR:  uncharacterized protein; TIGRFAM: septum formation topological specificity factor MinE; PFAM: septum formation topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE
YP_004280941.1	COGs: COG2894 septum formation inhibitor-activating ATPase; InterPro IPR010223; KEGG: hau:Haur_3422 septum site-determining protein MinD; SPTR: septum site-determining protein MinD; TIGRFAM: septum site-determining protein MinD; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: septum site-determining protein MinD
YP_004280942.1	COGs: COG0850 septum formation inhibitor; HAMAP: septum formation inhibitor MinC; InterPro IPR005526: IPR013033; KEGG: slp:Slip_0694 septum site-determining protein MinC; PFAM: septum formation inhibitor MinC, C-terminal; SPTR: Probable septum site-determining protein minC; PFAM: septum formation inhibitor MinC, C-terminal domain; TIGRFAM: septum site-determining protein MinC
YP_004280943.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035: IPR005925; KEGG: mvo:Mvol_1153 agmatinase; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Agmatinase; TIGRFAM:  agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase
YP_004280944.1	COGs: COG0421 Spermidine synthase; HAMAP: Spermidine synthase; InterPro IPR001045; KEGG: sul:SYO3AOP1_0155 spermidine synthase; PFAM: Spermine synthase; PRIAM: Spermidine synthase; SPTR: Spermidine synthase; TIGRFAM: Spermine synthase; PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase
YP_004280945.1	COGs: COG1568 methyltransferase; InterPro IPR002723; KEGG: mfs:MFS40622_0658 protein of unknown function DUF43; PFAM: Protein of unknown function DUF43; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF43
YP_004280946.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891: IPR013709: IPR005675; KEGG: tpt:Tpet_0368  alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; Pyruvate carboxyltransferase; PRIAM: (R)-citramalate synthase; SPTR: 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase related; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase
YP_004280947.1	COGs: COG0527 Aspartokinase; InterPro IPR001048: IPR002912: IPR005260: IPR001341; KEGG: saf:SULAZ_1497 asparate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase
YP_004280948.1	COGs: COG0069 Glutamate synthase domain 2; InterPro IPR000583: IPR006982: IPR002932: IPR002489; KEGG: hth:HTH_0871 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; PRIAM: Glutamate synthase (ferredoxin); SPTR: Ferredoxin-dependent glutamate synthase; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II
YP_004280949.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004280950.1	COGs: COG0780 Enzyme related to GTP cyclohydrolase I; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; InterPro IPR020602: IPR016856; KEGG: vpr:Vpar_0139 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: PreQ(1) synthase; SPTR: NADPH-dependent 7-cyano-7-deazaguanine reductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase
YP_004280951.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845; KEGG: dtu:Dtur_0928 methylthioadenosine phosphorylase; PFAM: Nucleoside phosphorylase; PRIAM: S-methyl-5'-thioadenosine phosphorylase; SPTR: Similar to 5'-methylthioadenosine phosphorylase; PFAM: phosphorylase superfamily
YP_004280952.1	COGs: COG2899 conserved hypothetical protein; InterPro IPR007427; KEGG: abu:Abu_1367 hypothetical protein; PFAM: Protein of unknown function DUF475; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF475)
YP_004280953.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: pmx:PERMA_0525 ADP-heptose:LPS heptosyltransferase; PFAM: Glycosyl transferase, family 9; SPTR: ADP-heptose:LPS heptosyltransferase; PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_004280954.1	COGs: COG1773 Rubredoxin; InterPro IPR004039; KEGG: tpe:Tpen_1457 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; PFAM: Rubredoxin
YP_004280955.1	COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: pmx:PERMA_0394 YlxP; PFAM: Protein of unknown function DUF503; SPTR: YlxP; PFAM: Protein of unknown function (DUF503)
YP_004280956.1	COGs: COG2067 Long-chain fatty acid transport protein; InterPro IPR005017; KEGG: ddf:DEFDS_1469 long-chain fatty acid transport protein; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: Long-chain fatty acid transport protein; PFAM: Protein of unknown function (DUF3308); Outer membrane protein transport protein (OMPP1/FadL/TodX)
YP_004280957.1	KEGG: ddf:DEFDS_1470 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Bacterial virulence factor lipase N-terminal
YP_004280958.1	COGs: COG2105 conserved hypothetical protein; InterPro IPR009288; KEGG: dau:Daud_0268 hypothetical protein; PFAM: AIG2-like; SPTR:  uncharacterized protein; PFAM: AIG2-like family
YP_004280959.1	COGs: COG0187 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594: IPR013506: IPR006171: IPR002288: IPR 011557: IPR001241; KEGG: sul:SYO3AOP1_0964 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit B; PFAM: Toprim domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit
YP_004280960.1	COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781: IPR002469: IPR001680; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; peptidase S9B, dipeptidylpeptidase IV N-terminal; SPTR: G-protein beta WD-40 repeats containing protein, ; PFAM: WD domain, G-beta repeat
YP_004280961.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: pmx:PERMA_1125 transporter; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: transporter; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_004280962.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: tal:Thal_0068 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase
YP_004280963.1	COGs: COG0111 phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140: IPR002912: IPR006236; KEGG: sul:SYO3AOP1_0259 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT; PRIAM: phosphoglycerate dehydrogenase; SPTR: phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase
YP_004280964.1	KEGG: pmx:PERMA_1373 Tat pathway signal sequence domain protein; SPTR: Tat pathway signal sequence domain protein
YP_004280965.1	COGs: COG3034 conserved hypothetical protein; InterPro IPR005490; KEGG: pmx:PERMA_1371 hypothetical protein; PFAM: YkuD domain; SPTR:  uncharacterized protein; PFAM: L,D-transpeptidase catalytic domain
YP_004280966.1	COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; KEGG: sul:SYO3AOP1_1315 anaerobic ribonucleoside-triphosphate reductase; SPTR: Anaerobic ribonucleoside-triphosphate reductase
YP_004280967.1	COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; KEGG: sul:SYO3AOP1_1315 anaerobic ribonucleoside-triphosphate reductase; SPTR: Anaerobic ribonucleoside triphosphate reductase
YP_004280968.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197; KEGG: cth:Cthe_0647 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM; SPTR: Anaerobic ribonucleoside-triphosphate reductase activating protein; manually curated; PFAM: Radical SAM superfamily
YP_004280969.1	COGs: COG0620 methionine synthase II (cobalamin-independent); InterPro IPR013215: IPR002629; KEGG: aae:aq_1710 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; PRIAM:5-methyltetrahydropteroyltriglutamate--homocy steineS-methyltransferase; SPTR:5-methyltetrahydropteroyltriglutamate--homocys teinemethyltransferase; PFAM: Cobalamin-independent synthase, N-terminal domain; Cobalamin-independent synthase, Catalytic domain; TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase
YP_004280970.1	KEGG: ape:APE_0900.1 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_004280971.1	KEGG: fno:Fnod_1767 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF548)
YP_004280972.1	InterPro IPR005144: IPR013509: IPR000788: IPR013346; KEGG: cyt:cce_1354 ribonucleoside-diphosphate reductase alpha subunit; PFAM: ribonucleotide reductase large subunit, C-terminal; ribonucleotide reductase large subunit, N-terminal; ATP-cone; SPTR: ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase, all-alpha domain; ATP cone domain; ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit
YP_004280973.1	COGs: COG0208 ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: fnu:FN0103 ribonucleoside-diphosphate reductase beta chain; PFAM: ribonucleotide reductase; SPTR: ribonucleoside-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase, small chain
YP_004280974.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: cyc:PCC7424_1967 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SPTR: phosphoglycerate mutase; PFAM: phosphoglycerate mutase family
YP_004280975.1	COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367; KEGG: tko:TK0107 manganese-dependent transcription regulator; PFAM: Iron dependent repressor; SMART: Iron dependent repressor; SPTR: Manganese-dependent transcription regulator; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain
YP_004280976.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197: IPR020050: IPR006638; KEGG: saf:SULAZ_0984  menaquinone biosynthesis protein, family; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR:  menaquinone biosynthesis protein, family; TIGRFAM:  menaquinone biosynthesis protein; FO synthase, subunit 2; PFAM: Radical SAM superfamily; TIGRFAM:  menaquinone biosynthesis protein, SCO4494 family; radical SAM domain protein, CofH subfamily
YP_004280977.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197: IPR020050: IPR006638; KEGG: saf:SULAZ_0984  menaquinone biosynthesis protein, family; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR:  menaquinone biosynthesis protein, family; TIGRFAM:  menaquinone biosynthesis protein; FO synthase, subunit 2; PFAM: Radical SAM superfamily; TIGRFAM:  menaquinone biosynthesis protein, SCO4494 family; radical SAM domain protein, CofH subfamily
YP_004280978.1	COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672; KEGG: pmx:PERMA_1557 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); SPTR: Glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase
YP_004280979.1	COGs: COG0566 rRNA methylase; InterPro IPR013123: IPR001537: IPR004441; KEGG: hya:HY04AAS1_0313 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: SpoU rRNA methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3
YP_004280980.1	COGs: COG0348 polyferredoxin; KEGG: glo:Glov_1050 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_004280981.1	InterPro IPR010095; KEGG: aae:aq_1459 neutral protease; PFAM: transposase, IS605 OrfB, C-terminal; SPTR: Neutral protease; TIGRFAM: transposase, IS605 OrfB, C-terminal; manually curated; PFAM: Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004280982.1	COGs: COG2452 site-specific integrase-resolvase; InterPro IPR000551: IPR006119; KEGG: dau:Daud_1710 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; HTH transcriptional regulator, MerR; SPTR: Resolvase, N-terminal domain; PFAM: Resolvase, N terminal domain; TIGRFAM: DNA binding domain, excisionase family
YP_004280983.1	COGs: COG0536 GTPase; HAMAP: GTPase obg; InterPro IPR006169: IPR002917: IPR014100: IPR005225; KEGG: pmx:PERMA_0490 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain
YP_004280984.1	COGs: COG0263 Glutamate 5-kinase; HAMAP: Glutamate 5-kinase; InterPro IPR001048: IPR002478: IPR005715; KEGG: tmt:Tmath_1126 glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Glutamate 5-kinase; TIGRFAM: Glutamate 5-kinase, ProB-related; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase
YP_004280985.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683; KEGG: pab:PAB1655 initiation factor EIf-2b alpha subunit 1; PFAM: Thioesterase superfamily; SPTR: PaaI related protein, phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_004280986.1	COGs: COG0216 Protein chain release factor A; HAMAP: peptide chain release factor 1; InterPro IPR005139: IPR000352: IPR004373; KEGG: aae:aq_876 peptide chain release factor 1; PFAM: Class I peptide chain release factor; peptide chain release factor; SPTR: peptide chain release factor RF-1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_004280987.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197: IPR006638; KEGG: ddf:DEFDS_1457 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004280988.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004280989.1	COGs: COG0407 Uroporphyrinogen-III decarboxylase; HAMAP: Uroporphyrinogen decarboxylase HemE; InterPro IPR000257: IPR006361; KEGG: chy:CHY_0483 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: Uroporphyrinogen decarboxylase HemE; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase
YP_004280990.1	KEGG: aae:aq_1923 hypothetical protein; SPTR: Uncharacterized protein aq_1923
YP_004280991.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873: IPR011904; KEGG: mhu:Mhun_0352 acetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: Acetate--CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase
YP_004280992.1	InterPro IPR004477; KEGG: pmx:PERMA_2021 competence protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein
YP_004280993.1	COGs: COG0019 diaminopimelate decarboxylase; InterPro IPR000183: IPR002986; KEGG: tye:THEYE_A1133 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: diaminopimelate decarboxylase; SPTR: diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase
YP_004280994.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004280995.1	COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: cte:CT1965 hypothetical protein; PFAM: Divalent ion symporter; SPTR: Membrane protein, ; PFAM: Citrate transporter
YP_004280996.1	KEGG: dat:HRM2_39060 hypothetical protein; SPTR:  uncharacterized protein
YP_004280997.1	COGs: COG0547 Anthranilate phosphoribosyltransferase; HAMAP: Anthranilate phosphoribosyl transferase; InterPro IPR017459: IPR000312: IPR005940; KEGG: saf:SULAZ_0181 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: Anthranilate phosphoribosyl transferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase
YP_004280998.1	COGs: COG1833 conserved hypothetical protein; InterPro IPR002837: IPR000305; KEGG: cyt:cce_5126 hypothetical protein; PFAM: Protein of unknown function DUF123; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR:  endonuclease; PFAM: Domain of unknown function DUF123
YP_004280999.1	KEGG: pmx:PERMA_1991 hypothetical protein; SPTR:  uncharacterized protein
YP_004281000.1	InterPro IPR002934; KEGG: pmx:PERMA_1990 DNA polymerase, beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase, beta domain protein region; PFAM: Nucleotidyltransferase domain
YP_004281001.1	COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR002937: IPR004572; KEGG: gur:Gura_0144 protoporphyrinogen oxidase; PFAM: Amine oxidase; SPTR: Protoporphyrinogen oxidase; TIGRFAM: Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase
YP_004281002.1	COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); HAMAP: Ferrochelatase; InterPro IPR001015; KEGG: pmx:PERMA_1671 ferrochelatase; PFAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: Ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase
YP_004281003.1	COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: aae:aq_2013 hypothetical protein; PFAM: Uncharacterised protein family UPF0047; SPTR:  uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme
YP_004281004.1	COGs: COG0331 ACP S-malonyltransferase; InterPro IPR014043: IPR004410; KEGG: pth:PTH_1743 ACP S-malonyltransferase; PFAM: Acyl transferase; PRIAM: ACP S-malonyltransferase; SPTR: ACP S-malonyltransferase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase
YP_004281005.1	InterPro IPR005077; KEGG: adg:Adeg_2154 peptidase C11 clostripain; PFAM: peptidase C11, clostripain; SPTR:  uncharacterized protein; PFAM: Clostripain family
YP_004281006.1	KEGG: spo:SPAC23D3.13c guanyl-nucleotide exchange factor (predicted); SPTR:  uncharacterized protein C1_0035
YP_004281007.1	COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728: IPR010918: IPR006283; KEGG: hth:HTH_1601 thiamine monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; TIGRFAM: thiamine-monophosphate kinase
YP_004281008.1	COGs: COG1968 Uncharacterized bacitracin resistance protein; HAMAP: Bacitracin resistance protein BacA; InterPro IPR003824; KEGG: pmx:PERMA_0381 undecaprenyl-diphosphatase UppP; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; TIGRFAM: Bacitracin resistance protein BacA; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_004281009.1	COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482: IPR006321: IPR003593; KEGG: aae:aq_745 twitching motility protein PilT; PFAM: type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching motility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_004281010.1	COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: ddf:DEFDS_1111 type IV pilus assembly protein PilC; PFAM: type II secretion system F domain; SPTR: type IV pilus assembly protein PilC; PFAM: Bacterial type II secretion system protein F domain
YP_004281011.1	COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: fma:FMG_0634 collagenase family protease; PFAM: peptidase U32; SPTR: Collagenase family protease; PFAM: peptidase family U32
YP_004281012.1	KEGG: sul:SYO3AOP1_0855 hypothetical protein; SPTR:  uncharacterized protein
YP_004281013.1	COGs: COG0124 histidyl-tRNA synthetase; HAMAP: histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR002314: IPR004154: IPR015807; KEGG: aae:aq_122 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: histidine--tRNA ligase; SPTR: histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase, class IIa, subgroup; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_004281014.1	COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR013512: IPR013644: IPR003821; KEGG: cpc:Cpar_0071 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_004281015.1	COGs: COG2109 ATP:corrinoid adenosyltransferase; InterPro IPR003724; KEGG: pth:PTH_1324 ATP:corrinoid adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; SPTR: ATP:corrinoid adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase
YP_004281016.1	KEGG: bxe:Bxe_C0475 hypothetical protein; SPTR:  uncharacterized protein
YP_004281017.1	COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: abi:Aboo_1450 radical SAM domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004281018.1	COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: bfl:Bfl610 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal; SPTR: 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: 3-deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_004281019.1	COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: saf:SULAZ_1148 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase
YP_004281020.1	COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: glo:Glov_0768 lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis acyltransferase; manually curated; PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_004281021.1	COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022: IPR002627; KEGG: chy:CHY_1394 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_004281022.1	COGs: COG1923 Uncharacterized host factor I protein; InterPro IPR005001: IPR001163; KEGG: zmn:Za10_0891 RNA-binding protein Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain; SPTR: Protein hfq; TIGRFAM: Host factor Hfq; PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq
YP_004281023.1	COGs: COG3581 conserved hypothetical protein; KEGG: aae:aq_276 hypothetical protein; SPTR:  uncharacterized protein
YP_004281024.1	COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616: IPR008532; KEGG: hor:Hore_09780 fibronectin-binding A domain protein; PFAM: Fibronectin-binding A, N-terminal; Protein of unknown function DUF814; SPTR: Fibronectin-binding A domain protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA)
YP_004281025.1	COGs: COG0670 Integral membrane protein interacts with FtsH; InterPro IPR006214; KEGG: dvm:DvMF_0927 protein of unknown function UPF0005; PFAM: Bax inhibitor-1-related; SPTR:  uncharacterized protein; PFAM: Uncharacterised protein family UPF0005
YP_004281027.1	KEGG: lba:Lebu_0310 transcriptional regulator, TetR family; SPTR: Glycosyltransferases involved in cell wall biogenesis
YP_004281029.1	COGs: COG1294 Cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: cli:Clim_1817 cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II; SPTR: Cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB)
YP_004281030.1	COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: ddf:DEFDS_1619 cytochrome bd oxidase subunit I; PFAM: Cytochrome bd ubiquinol oxidase, subunit I; SPTR: Cytochrome bd oxidase subunit I; PFAM: Bacterial Cytochrome Ubiquinol Oxidase
YP_004281031.1	COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662: IPR001048; KEGG: ddf:DEFDS_0261 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase
YP_004281032.1	COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR004507: IPR003382; KEGG: pho:PH1014 aromatic acid decarboxylase; PFAM: Flavoprotein; SPTR: Aromatic acid decarboxylase; TIGRFAM: phenylacrylic acid decarboxylase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
YP_004281033.1	COGs: COG2269 Truncated possibly inactive lysyl-tRNA synthetase (class II); InterPro IPR004364; KEGG: pmx:PERMA_1095 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); PRIAM: Lysine--tRNA ligase; SPTR: Lysine--tRNA ligase; PFAM: tRNA synthetases class II (D, K and N)
YP_004281034.1	COGs: COG0622 phosphoesterase; InterPro IPR004843; KEGG: sul:SYO3AOP1_1287 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_004281035.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: aae:aq_186 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_004281036.1	COGs: COG1830 DhnA-type fructose-1 6-bisphosphate aldolase; InterPro IPR010210: IPR002915; KEGG: aae:aq_1554 fructose-bisphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Fructose-bisphosphate aldolase; SPTR: Uncharacterized aldolase aq_1554; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: predicted phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004281037.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281038.1	COGs: COG1351 alternative thymidylate synthase; InterPro IPR003669; KEGG: tye:THEYE_A0969 thymidylate synthase, flavin-dependent; PFAM: Thymidylate synthase ThyX; SPTR: Thymidylate synthase, flavin-dependent; TIGRFAM: Thymidylate synthase ThyX; PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent
YP_004281039.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281040.1	KEGG: saf:SULAZ_1706  transposase; SPTR:  transposase; manually curated; PFAM: Integrase core domain
YP_004281041.1	COGs: COG0624 Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: sul:SYO3AOP1_0594 succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase M20, dimerisation; SPTR: peptidase M20; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: succinyl-diaminopimelate desuccinylase
YP_004281042.1	COGs: COG0029 Aspartate oxidase; InterPro IPR005288: IPR003953: IPR004112; KEGG: sul:SYO3AOP1_0678 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase
YP_004281043.1	COGs: COG0797 lipoprotein; InterPro IPR012997: IPR005132: IPR007730; KEGG: dat:HRM2_49390 RlpA-like lipoprotein precursor; PFAM: Rare lipoprotein A; Sporulation related domain; SPTR: RlpA-like lipoprotein; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A
YP_004281044.1	InterPro IPR000771; KEGG: pmx:PERMA_0265 aldolase; PFAM: Ketose-bisphosphate aldolase, class-II; SPTR: Aldolase; PFAM: Fructose-bisphosphate aldolase class-II
YP_004281045.1	COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: pmx:PERMA_0939 ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; SPTR: YjeQ protein; TIGRFAM: GTPase EngC; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A
YP_004281046.1	COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: cbi:CLJ_B0494 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_004281047.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR010066: IPR003439: IPR013563: IPR003593; KEGG: aar:Acear_0632 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_004281048.1	COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: tpd:Teth39_1788 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_004281049.1	COGs: COG0420 DNA repair exonuclease; InterPro IPR004843; KEGG: msi:Msm_0121 DNA repair exonuclease Rad32; PFAM: Metallophosphoesterase; SPTR: DNA repair exonuclease (SbcD/Mre11-family), Rad32; PFAM: Calcineurin-like phosphoesterase
YP_004281050.1	KEGG: dsa:Desal_0019 hypothetical protein; SPTR:  uncharacterized protein
YP_004281051.1	COGs: COG0079 histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: histidinol-phosphate aminotransferase; InterPro IPR005861: IPR004839; KEGG: mta:Moth_0515 histidinol phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: histidinol-phosphate transaminase; SPTR: histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_004281052.1	COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: abi:Aboo_0833 CinA domain protein; PFAM: CinA, C-terminal; SPTR: CinA domain protein; TIGRFAM: CinA, C-terminal; PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain
YP_004281053.1	COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: fno:Fnod_1754 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_004281054.1	COGs: COG2206 HD-GYP domain; InterPro IPR006675: IPR006674: IPR003607; KEGG: tjr:TherJR_0746 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_004281055.1	COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR016484: IPR005225: IPR002917: IPR003593; KEGG: pmx:PERMA_0019 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; GTP-binding protein Era; small GTP-binding protein domain
YP_004281056.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281057.1	InterPro IPR010095; KEGG: hth:HTH_1865 transposase; PFAM: transposase, IS605 OrfB, C-terminal; SPTR: transposase; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM: Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004281058.1	COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR004483; KEGG: nis:NIS_1242 DNA/RNA helicase; SPTR: DNA/RNA helicase; TIGRFAM: DNA helicase, TIGRFAM: DNA helicase
YP_004281059.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758: IPR000713: IPR013221: IPR004101; KEGG: gsu:GSU3068 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate--alanine ligase
YP_004281060.1	COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterPro IPR018320: IPR020046: IPR020047: IPR001098: IPR 002421: IPR008918; KEGG: ate:Athe_1441 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I
YP_004281061.1	COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: dhd:Dhaf_4391 O-methyltransferase family 3; PFAM: O-methyltransferase, family 3; SPTR:  uncharacterized protein; PFAM: O-methyltransferase
YP_004281062.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281063.1	KEGG: dak:DaAHT2_2111 hypothetical protein; SPTR:  uncharacterized protein
YP_004281064.1	KEGG: dap:Dacet_0794 hypothetical protein; SPTR:  uncharacterized protein
YP_004281065.1	KEGG: dak:DaAHT2_2113 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Doubled CXXCH motif (Paired_CXXCH_1)
YP_004281066.1	KEGG: ddf:DEFDS_0742 multiheme C-type cytochrome; SPTR: Multiheme c-type cytochrome
YP_004281067.1	KEGG: cla:Cla_0807 cytochrome c family protein; SPTR: Cytochrome c family protein; PFAM: Cytochrome b(N-terminal)/b6/petB
YP_004281068.1	KEGG: dap:Dacet_0787 hypothetical protein; SPTR:  uncharacterized protein
YP_004281069.1	InterPro IPR001258; KEGG: dak:DaAHT2_2116 hypothetical protein; PFAM: NHL repeat; SPTR: hypothetical protein
YP_004281070.1	InterPro IPR010177; KEGG: ddf:DEFDS_0746 multiheme C-type cytochrome; SPTR: Multiheme c-type cytochrome; TIGRFAM: Doubled CXXCH motif; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: doubled CXXCH domain
YP_004281071.1	KEGG: apa:APP7_0361 bicyclomycin resistance-like protein; SPTR: Bicyclomycin resistance-like protein
YP_004281073.1	KEGG: mca:MCA0424 cytochrome c family protein; SPTR: Cytochrome c family protein
YP_004281074.1	KEGG: gem:GM21_3107 hypothetical protein; SPTR:  uncharacterized protein
YP_004281075.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281076.1	COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; InterPro IPR005855: IPR000583: IPR001347; KEGG: ddf:DEFDS_1947 glucosamine--fructose-6-phosphate aminotransferase; PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_004281077.1	COGs: COG0788 Formyltetrahydrofolate hydrolase; InterPro IPR004810: IPR002912: IPR002376; KEGG: aae:aq_1818 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT; PRIAM: Formyltetrahydrofolate deformylase; SPTR: Formyltetrahydrofolate deformylase; TIGRFAM: Formyltetrahydrofolate deformylase; PFAM: ACT domain; Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase
YP_004281078.1	COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: ATP phosphoribosyltransferase; InterPro IPR013820; KEGG: glo:Glov_0819 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; PFAM: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase
YP_004281079.1	COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750: IPR001986; KEGG: gur:Gura_4059 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_004281080.1	COGs: COG2890 methylase of polypeptide chain release factors; InterPro IPR004556: IPR019874: IPR007848; KEGG: aar:Acear_2234 protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; SPTR: Protein-(Glutamine-N5) methyltransferase, release factor-specific; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: methyltransferase small domain; TIGRFAM: HemK family  methylases; protein-(glutamine-N5) methyltransferase, release factor-specific
YP_004281081.1	COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits; InterPro IPR002880: IPR011766; KEGG: wsu:WS0714 indolepyruvate oxidoreductase subunit IorA.-.-iorindolepyruvate ferredoxin oxidoreductase alpha subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: indolepyruvate oxidoreductase subunit IORA .-.-IORINDOLEPYRUVATE FERREDOXIN OXIDOREDUCTASE ALPHA SUBUNIT; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit
YP_004281082.1	COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: nam:NAMH_0991 indolepyruvate oxidoreductase subunit IorB; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: Indolepyruvate oxidoreductase subunit IorB; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit
YP_004281084.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281085.1	COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: ttm:Tthe_2433 RNA-metabolising metallo-beta-lactamase; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: RNA-metabolising metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain
YP_004281086.1	KEGG: tva:TVAG_252710 hypothetical protein; SPTR:  uncharacterized protein
YP_004281087.1	COGs: COG1110 Reverse gyrase; HAMAP: Reverse gyrase; InterPro IPR005736: IPR006171: IPR013497: IPR014001: IPR 006154: IPR003601: IPR003602; KEGG: aae:aq_1159 reverse gyrase; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; DEAD-like helicase, N-terminal; SPTR: Reverse gyrase 2; TIGRFAM: Reverse gyrase; PFAM: Toprim domain; DEAD/DEAH box helicase; DNA topoisomerase; TIGRFAM: reverse gyrase
YP_004281088.1	COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: tye:THEYE_A1363 hydrogenase expression/formation protein; PFAM: peptidase A31, hydrogen uptake protein; SPTR: Hydrogenase expression/formation protein; TIGRFAM: peptidase A31, hydrogen uptake protein; PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease
YP_004281089.1	COGs: COG3259 Coenzyme F420-reducing hydrogenase alpha subunit; InterPro IPR001501; KEGG: tye:THEYE_A1365 F420-non-reducing hydrogenase subunit A, selenocysteine-containing; PFAM: Nickel-dependent hydrogenase, large subunit; PRIAM: Hydrogen dehydrogenase; SPTR: F420-non-reducing hydrogenase subunit A, selenocysteine-containing; PFAM: Nickel-dependent hydrogenase
YP_004281090.1	COGs: COG1941 Coenzyme F420-reducing hydrogenase gamma subunit; InterPro IPR006137; KEGG: tye:THEYE_A1366 F420-non-reducing hydrogenase subunit G; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; SPTR: F420-non-reducing hydrogenase subunit G; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit
YP_004281091.1	COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR002938: IPR003813; KEGG: apo:Arcpr_0774 methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase, delta subunit; Monooxygenase, FAD-binding; SPTR: methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase, delta subunit; Pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S binding domain
YP_004281092.1	COGs: COG0130 Pseudouridine synthase; HAMAP: tRNA pseudouridine synthase B; InterPro IPR014780: IPR002501: IPR015240; KEGG: aae:aq_705 tRNA pseudouridine 55 synthase; PFAM: Pseudouridine synthase II, TruB, N-terminal; Pseudouridine synthase II, TruB, subfamily 1, C-terminal, bacterial-type; SPTR: tRNA pseudouridine synthase B; TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; PFAM: Pseudouridine synthase II TruB, C-terminal; TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase
YP_004281093.1	COGs: COG4796 type II secretory pathway component HofQ; InterPro IPR011662: IPR005644: IPR004846; KEGG: hna:Hneap_1941 type IV pilus secretin PilQ; PFAM: type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; SPTR: type IV pilus secretin PilQ; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ
YP_004281094.1	KEGG: bfu:BC1G_08953 hypothetical protein; SPTR:  uncharacterized protein
YP_004281095.1	COGs: COG3167 Tfp pilus assembly protein PilO; KEGG: gme:Gmet_0973 pilus assembly protein, PilO; SPTR: Pilus assembly protein, PilO; PFAM: Pilus assembly protein, PilO
YP_004281096.1	KEGG: ddf:DEFDS_1727 hypothetical protein; SPTR:  uncharacterized protein
YP_004281097.1	COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: nde:NIDE1348 type IV pilus biogenesis protein PilM; SPTR: type IV pilus biogenesis protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM
YP_004281098.1	COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: tmt:Tmath_1113 type II secretion system F domain protein; PFAM: type II secretion system F domain; SPTR: type II secretion system F domain protein; PFAM: Bacterial type II secretion system protein F domain
YP_004281099.1	COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR013369: IPR007831: IPR001482: IPR003593; KEGG: gem:GM21_0608 general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: General secretion pathway protein E; TIGRFAM: type II secretion system gspE; PFAM: GSPII_E N-terminal domain; type II/IV secretion system protein; TIGRFAM: general secretory pathway protein E
YP_004281100.1	COGs: COG1450 type II secretory pathway component PulD; InterPro IPR013356: IPR005644: IPR004846; KEGG: dma:DMR_28370 general secretion pathway protein D precursor; PFAM: type II/III secretion system; NolW-like; SPTR: General secretion pathway protein D; TIGRFAM: type II secretion system gspD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D
YP_004281101.1	COGs: COG3031 type II secretory pathway component PulC; InterPro IPR001478; KEGG: aae:aq_1473 hypothetical protein; SMART: PDZ/DHR/GLGF; SPTR:  uncharacterized protein; TIGRFAM: general secretion pathway protein C
YP_004281102.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR001667: IPR003156: IPR000644: IPR002646; KEGG: sfu:Sfum_0679 polynucleotide adenylyltransferase region; PFAM: poly A polymerase, head domain; Cystathionine beta-synthase, core; phosphoesterase, RecJ-like; phosphoesterase, DHHA1; SMART: Cystathionine beta-synthase, core; SPTR: polynucleotide adenylyltransferase region; PFAM: DHHA1 domain; DHH family; CBS domain; poly A polymerase head domain
YP_004281103.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR001959: IPR010095; KEGG: sul:SYO3AOP1_0218 transposase IS605 OrfB; PFAM: transposase, IS605 OrfB, C-terminal; transposase, probable, IS891/IS1136/IS1341; SPTR: Probable transposase; PFAM:  transposase DNA-binding domain
YP_004281104.1	COGs: COG0294 dihydropteroate synthase; InterPro IPR006390: IPR000489; KEGG: aar:Acear_1783 dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; PRIAM: dihydropteroate synthase; SPTR: dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase
YP_004281105.1	COGs: COG1624 conserved hypothetical protein; InterPro IPR014046: IPR003390; KEGG: sul:SYO3AOP1_0110 protein of unknown function DUF147; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00159; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: conserved hypothetical protein TIGR00159
YP_004281106.1	KEGG: tye:THEYE_A0045 hypothetical protein; SPTR: YbbR-like
YP_004281107.1	COGs: COG1109 phosphomannomutase; InterPro IPR006352: IPR005844: IPR005845: IPR005846: IPR 005843; KEGG: toc:Toce_1968 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; PRIAM: phosphoglucosamine mutase; SPTR: phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase
YP_004281108.1	InterPro IPR002931; KEGG: dth:DICTH_0562 tetratricopeptide repeat domain protein; PFAM: transglutaminase-like; SPTR: Tetratricopeptide repeat domain protein; PFAM: transglutaminase-like superfamily
YP_004281109.1	COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: O-sialoglycoprotein endopeptidase; InterPro IPR017861: IPR000905; KEGG: pmx:PERMA_0185  DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM:  glycoprotease GCP; peptidase M22, glycoprotease, subgroup; PFAM: Glycoprotease family; TIGRFAM:  glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family
YP_004281110.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: pmx:PERMA_0682 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004281111.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: nis:NIS_1671 AcrA/AcrE family protein; PFAM: Secretion protein HlyD; SPTR: AcrA/AcrE family protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004281112.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: nis:NIS_1672 peptide ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Antimicrobial peptide ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004281113.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: nis:NIS_1673 peptide ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Antimicrobial peptide ABC transporter, permease; PFAM: Predicted permease
YP_004281114.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: nis:NIS_1674 peptide ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Antimicrobial peptide ABC transporter, permease; PFAM: Predicted permease
YP_004281115.1	InterPro IPR019046; KEGG: aoe:Clos_1856 type II site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type II, NgoPII; PRIAM: type II site-specific deoxyribonuclease; SPTR: type-2 restriction enzyme MthTI; PFAM: NgoPII restriction endonuclease
YP_004281116.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: deb:DehaBAV1_0079 DNA-cytosine methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: C-5 cytosine-specific DNA methylase superfamily; TIGRFAM: DNA methylase, C-5 cytosine-specific; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm)
YP_004281117.1	COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390: IPR013822: IPR000897: IPR003593; KEGG: aae:aq_920 cell division protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: Cell division protein ftsY homolog; TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_004281118.1	COGs: COG0452 phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR005252: IPR003382: IPR007085; KEGG: saf:SULAZ_0961 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; PRIAM: phosphopantothenate--cysteine ligase; SPTR: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic
YP_004281119.1	COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: mif:Metin_0442 Cl-channel voltage-gated family protein; PFAM: Chloride channel, voltage gated; SPTR: Probable voltage gated chloride channel; PFAM: Voltage gated chloride channel
YP_004281120.1	COGs: COG0501 Zn-dependent protease with chaperone function; HAMAP: protease htpX; InterPro IPR001915; KEGG: hth:HTH_0072  heat shock protein; PFAM: peptidase M48; SPTR: Heat shock protein X; PFAM: peptidase family M48
YP_004281121.1	COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR003136: IPR011994; KEGG: tte:TTE1350 cytidylate kinase; PFAM: Cytidylate kinase domain; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase
YP_004281122.1	COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR006405: IPR015977; KEGG: aae:aq_1056 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: Nicotinate phosphoribosyltransferase; TIGRFAM: Nicotinate phosphoribosyltransferase PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM:  nicotinate phosphoribosyltransferase
YP_004281123.1	COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265: IPR003651; KEGG: pmx:PERMA_0607 probable endonuclease III (DNA-(apurinic orapyrimidinic site) lyase); PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SPTR: Probable endonuclease III (DNA-(Apurinic orapyrimidinic site) lyase); PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III
YP_004281124.1	COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; InterPro IPR006269: IPR006218; KEGG: sul:SYO3AOP1_0234 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase
YP_004281125.1	COGs: COG0698 ribose 5-phosphate isomerase RpiB; InterPro IPR004785: IPR003500; KEGG: ddf:DEFDS_0484 ribose 5-phosphate isomerase B; PFAM: ribose/galactose isomerase; PRIAM: ribose-5-phosphate isomerase; SPTR: ribose 5-phosphate isomerase B; TIGRFAM: ribose/galactose isomerase; ribose 5-phosphate isomerase B; PFAM: ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family
YP_004281126.1	COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766; KEGG: hpl:HPB8_1033 thioredoxin 1; PFAM: Thioredoxin domain; SPTR: Thioredoxin; PFAM: Thioredoxin
YP_004281127.1	COGs: COG3640 CO dehydrogenase maturation factor; KEGG: tga:TGAM_0822 carbon monoxide dehydrogenase accessory protein,  (CooC); SPTR: Cobyrinic Acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004281128.1	COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041; KEGG: mpl:Mpal_0845 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_004281129.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011538: IPR019554: IPR019575; KEGG: tko:TK1613 NADH:ubiquinone oxidoreductase, NADH-binding subunit F; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH:ubiquinone oxidoreductase, NADH-binding subunit F; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain
YP_004281130.1	COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: mpl:Mpal_0843 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Ubiquinone) 24 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit
YP_004281131.1	COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterPro IPR010047: IPR004137; KEGG: tga:TGAM_0824 carbon monoxide dehydrogenase (CooS); PFAM: Prismane; PRIAM: Carbon-monoxide dehydrogenase (acceptor); SPTR: Carbon monoxide dehydrogenase (CooS); TIGRFAM: Carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit
YP_004281132.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; KEGG: mpl:Mpal_0841 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_004281133.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: aae:aq_031 transporter; PFAM: Sodium/sulphate symporter; SPTR: transporter (Pho87 family); TIGRFAM: Sodium/sulphate symporter; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter
YP_004281134.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281135.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281136.1	COGs: COG2262 GTPase; InterPro IPR016496: IPR005225: IPR002917; KEGG: hth:HTH_0420 GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain
YP_004281137.1	COGs: COG0151 phosphoribosylamine-glycine ligase; HAMAP: phosphoribosylglycinamide synthetase; InterPro IPR000115: IPR020562: IPR020561: IPR020560; KEGG: toc:Toce_1497 phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; PRIAM: phosphoribosylamine--glycine ligase; SPTR: phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylglycinamide synthetase; PFAM: phosphoribosylglycinamide synthetase, N domain; phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase
YP_004281138.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: dsh:Dshi_1605 lytic murein transglycosylase; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic murein transglycosylase; PFAM: transglycosylase SLT domain
YP_004281139.1	COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004635: IPR002142; KEGG: tye:THEYE_A1771 signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type; TIGRFAM: peptidase S49, SppA; PFAM: peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type
YP_004281140.1	COGs: COG1039 ribonuclease HIII; InterPro IPR004641: IPR001352; KEGG: pcu:pc0679 ribonuclease HIII; PFAM: ribonuclease HII/HIII; SPTR: ribonuclease HIII; TIGRFAM: ribonuclease HIII; PFAM: ribonuclease HII; TIGRFAM: ribonuclease HIII
YP_004281141.1	InterPro IPR007452; KEGG: sul:SYO3AOP1_1462 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR:  uncharacterized protein; PFAM: Family of unknown function (DUF490)
YP_004281142.1	COGs: COG2956 N-acetylglucosaminyl transferase; InterPro IPR001440: IPR019734; KEGG: pha:PSHAa1428 tetratricopeptide repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR:  N-acetylglucosaminyl-group transferase
YP_004281143.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: tpe:Tpen_0562 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: HIT domain protein; PFAM: HIT domain
YP_004281144.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: tmt:Tmath_1095 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR:  uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_004281145.1	COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: tte:TTE0875 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_004281146.1	COGs: COG1692 conserved hypothetical protein; InterPro IPR005235: IPR004843; KEGG: gur:Gura_1101 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; TIGRFAM: Conserved hypothetical protein CHP00282; TIGRFAM: metallophosphoesterase, MG_246/BB_0505 family
YP_004281147.1	COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR000672: IPR020630: IPR020631; KEGG: aae:aq_1898 methylenetetrahydrofolate dehydrogenase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004281148.1	KEGG: dat:HRM2_26720 iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein); SPTR: Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein); PFAM: 4Fe-4S binding domain
YP_004281149.1	KEGG: tal:Thal_0442 hypothetical protein; SPTR:  uncharacterized protein
YP_004281150.1	COGs: COG1188 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: fnu:FN0020 heat shock protein 15; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: RNA-binding S4 domain protein; PFAM: S4 domain
YP_004281151.1	COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: aae:aq_999 long-chain-fatty-acid CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Long-chain-fatty-acid CoA ligase; PFAM: AMP-binding enzyme
YP_004281152.1	COGs: COG0253 diaminopimelate epimerase; HAMAP: diaminopimelate epimerase; InterPro IPR001653; KEGG: hth:HTH_1776 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase
YP_004281153.1	COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005273: IPR005122; KEGG: ddf:DEFDS_1425 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4
YP_004281154.1	COGs: COG0701 permease; InterPro IPR005524; KEGG: nis:NIS_0906 hypothetical protein; PFAM: Protein of unknown function DUF318, transmembrane; SPTR: transporter; PFAM: Predicted permease
YP_004281155.1	COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: nam:NAMH_1123 CoB--CoM heterodisulfide reductase subunit B; PFAM: Cysteine-rich domain; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: CoB--CoM heterodisulfide reductase subunit B; PFAM: Cysteine-rich domain
YP_004281156.1	COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR004489: IPR001041; KEGG: nam:NAMH_1124 succinate dehydrogenase/fumarate reductase iron-sulfur protein; PFAM: Ferredoxin; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase/fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_004281157.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR014006: IPR003953: IPR004112; KEGG: aae:aq_594 fumarate reductase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase (ubiquinone); SPTR: Fumarate reductase flavoprotein subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
YP_004281158.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR014006: IPR003953: IPR004112; KEGG: nam:NAMH_1126 fumarate reductase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase (ubiquinone); SPTR: Fumarate reductase flavoprotein subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
YP_004281159.1	COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR004489: IPR001041; KEGG: gme:Gmet_0309 succinate dehydrogenase subunit B; PFAM: Ferredoxin; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase/fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_004281160.1	COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: sul:SYO3AOP1_0375 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain
YP_004281161.1	COGs: COG0068 Hydrogenase maturation factor; HAMAP: Acylphosphatase; InterPro IPR004421: IPR001792: IPR011125: IPR006070; KEGG: aae:aq_672 transcriptional regulatory protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; SPTR: transcriptional regulatory protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF
YP_004281162.1	COGs: COG3259 Coenzyme F420-reducing hydrogenase alpha subunit; InterPro IPR001501; KEGG: mvo:Mvol_0587 coenzyme F420 hydrogenase, subunit alpha; PFAM: Nickel-dependent hydrogenase, large subunit; PRIAM: Coenzyme F420 hydrogenase; SPTR: Coenzyme F420 hydrogenase, subunit alpha; PFAM: Nickel-dependent hydrogenase; TIGRFAM: coenzyme F420 hydrogenase, subunit alpha
YP_004281163.1	COGs: COG1941 Coenzyme F420-reducing hydrogenase gamma subunit; InterPro IPR006137; KEGG: mif:Metin_0513 hypothetical protein; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: Coenzyme F420 hydrogenase; SPTR:  uncharacterized protein; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: coenzyme F420 hydrogenase, subunit gamma
YP_004281164.1	COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterPro IPR007525; KEGG: mvo:Mvol_0590 coenzyme F420 hydrogenase, subunit beta; PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; SPTR: Coenzyme F420 hydrogenase, subunit beta; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
YP_004281165.1	InterPro IPR001845; KEGG: drm:Dred_0561 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004281166.1	COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR001821: IPR006311: IPR006137; KEGG: dps:DP0574 Ni/Fe-hydrogenase, small subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: Hydrogenase (acceptor); SPTR: Probable Ni/Fe-hydrogenase, small subunit; TIGRFAM: [Ni-Fe]-hydrogenase, small subunit; Twin-arginine translocation pathway, signal sequence; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA); Tat (twin-arginine translocation) pathway signal sequence
YP_004281167.1	COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501; KEGG: dps:DP0575 Ni/Fe-hydrogenase, large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; PRIAM: Cytochrome-c3 hydrogenase; SPTR: Probable Ni/Fe-hydrogenase, large subunit; PFAM: Nickel-dependent hydrogenase
YP_004281168.1	COGs: COG1969 Ni Fe-hydrogenase I cytochrome b subunit; InterPro IPR000516; KEGG: dps:DP0576 Ni/Fe-hydrogenase, cytochrome subunit; SPTR: Probable Ni/Fe-hydrogenase, cytochrome subunit; TIGRFAM: Nickel-dependent hydrogenase b-type cytochrome subunit; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit
YP_004281169.1	COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: gur:Gura_1947 hydrogenase maturation protease; PFAM: peptidase A31, hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: peptidase A31, hydrogen uptake protein; PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease
YP_004281170.1	COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: nmu:Nmul_A1664 hydrogenase assembly chaperone HypC/HupF; PFAM: Hydrogenase expression/formation protein, HupF/HypC; SPTR: Hydrogenase assembly chaperone hypC/hupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF
YP_004281171.1	COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); HAMAP: Hydrogenase nickel incorporation protein HypA/HybF; InterPro IPR000688; KEGG: dap:Dacet_2414 hydrogenase expression/synthesis HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; SPTR: Hydrogenase expression/synthesis HypA; PFAM: Hydrogenase expression/synthesis hypA family; TIGRFAM: hydrogenase nickel insertion protein HypA
YP_004281172.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pub:SAR11_0407 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: methyltransferase type 11; SPTR:  uncharacterized protein; PFAM: ubiE/COQ5 methyltransferase family
YP_004281173.1	COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR004392: IPR003495; KEGG: dps:DP0583 hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SPTR: Probable hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB
YP_004281174.1	COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR006260: IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: TonB, C-terminal; transposase, IS4-like; SPTR: transposase IS4 family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; transposase DDE domain; TIGRFAM: TonB family C-terminal domain
YP_004281175.1	COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dap:Dacet_2334 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; SPTR: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor
YP_004281176.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: aca:ACP_3128 peptide deformylase; PFAM: Formylmethionine deformylase; SPTR: peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: polypeptide deformylase; TIGRFAM: peptide deformylase
YP_004281177.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307: IPR001719; KEGG: tye:THEYE_A1274 AP endonuclease, family 2; PFAM: Xylose isomerase, TIM barrel domain; SMART: Endodeoxyribonuclease IV; SPTR: AP endonuclease, family 2; PFAM: Xylose isomerase-like TIM barrel
YP_004281178.1	KEGG: bbu:BB0794 hypothetical protein; SPTR:  uncharacterized protein
YP_004281179.1	COGs: COG0143 methionyl-tRNA synthetase; HAMAP: methionyl-tRNA synthetase; InterPro IPR002304: IPR015413; KEGG: ddf:DEFDS_0066 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); PRIAM: methionine--tRNA ligase; SPTR: methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (M); Anticodon-binding domain; TIGRFAM: methionyl-tRNA synthetase
YP_004281180.1	COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: hth:HTH_0490 ADP-ribosylglycohydrolase; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylglycohydrolase; PFAM: ADP-ribosylglycohydrolase
YP_004281181.1	KEGG: nis:NIS_0561 peptidyl-prolyl cis-trans isomerase; SPTR: peptidyl-prolyl cis-trans isomerase
YP_004281182.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: hth:HTH_1618 processing protease; PFAM: peptidase M16, N-terminal; peptidase M16, C-terminal; PRIAM: processing peptidase; SPTR: Processing protease; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16)
YP_004281183.1	KEGG: dsa:Desal_0706 hypothetical protein; SPTR:  uncharacterized protein
YP_004281184.1	KEGG: tmt:Tmath_0401 protein of unknown function DUF2250; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in archaea (DUF2250)
YP_004281185.1	COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455; KEGG: mmg:MTBMA_c12920 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; SPTR: Pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_004281186.1	COGs: COG0662 Mannose-6-phosphate isomerase; InterPro IPR013096; KEGG: tye:THEYE_A1401 cupin domain protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain
YP_004281187.1	COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR005762: IPR013221: IPR004101; KEGG: chy:CHY_2071 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_004281188.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: afl:Aflv_1872 cell division membrane protein; PFAM: Cell cycle protein; SPTR: Bacterial cell division membrane protein; PFAM: Cell cycle protein
YP_004281189.1	COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP: N-acetylglucosaminyltransferase, MurG; InterPro IPR006009: IPR004276: IPR007235; KEGG: pmx:PERMA_0622 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_004281190.1	COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234; KEGG: scl:sce2028 hypothetical protein; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; SPTR:  uncharacterized protein; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM:  transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B
YP_004281191.1	COGs: COG1102 Cytidylate kinase; KEGG: ddf:DEFDS_1510 hypothetical protein; SPTR:  uncharacterized protein
YP_004281192.1	COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: pmx:PERMA_0323 pyrazinamidase/nicotinamidase; PFAM: Isochorismatase-like; PRIAM: Nicotinamidase; SPTR: Pyrazinamidase/nicotinamidase; PFAM: Isochorismatase family
YP_004281193.1	COGs: COG0206 Cell division GTPase; InterPro IPR000158: IPR003008: IPR018316; KEGG: sat:SYN_00437 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_004281194.1	COGs: COG2452 site-specific integrase-resolvase; InterPro IPR000551: IPR006119; KEGG: tte:TTE0714 site-specific integrase-resolvase; PFAM: Resolvase, N-terminal; HTH transcriptional regulator, MerR; SPTR: Predicted site-specific integrase-resolvase; manually curated; PFAM: Resolvase, N terminal domain
YP_004281195.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: hya:HY04AAS1_1390 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004281196.1	COGs: COG2122 conserved hypothetical protein; InterPro IPR003374; KEGG: tle:Tlet_1362 hypothetical protein; PFAM: ApbE-like lipoprotein; SPTR:  uncharacterized protein; PFAM: ApbE family
YP_004281197.1	COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR000304: IPR004455; KEGG: ddf:DEFDS_1283 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_004281198.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: nam:NAMH_0079 diguanylate cyclase (GGDEF) domain protein; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase (GGDEF) domain protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: Metallo-beta-lactamase superfamily; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004281199.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR004412: IPR000120; KEGG: sul:SYO3AOP1_0487 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; PRIAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
YP_004281200.1	COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; InterPro IPR003837; KEGG: nth:Nther_0463 glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
YP_004281201.1	KEGG: kko:Kkor_1253 hypothetical protein; SPTR:  uncharacterized protein
YP_004281202.1	KEGG: ate:Athe_0194 thiamineS protein; SPTR:  uncharacterized protein
YP_004281203.1	COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Resolvase, holliday junction-type, YqgF-like; InterPro IPR005227: IPR006641; KEGG: pmx:PERMA_1719 hypothetical protein; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR:  Holliday junction resolvase; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF
YP_004281204.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281205.1	KEGG: tal:Thal_0847 hypothetical protein; SPTR:  uncharacterized protein
YP_004281206.1	KEGG: apo:Arcpr_1004 cytochrome b subunit of formate dehydrogenase-like protein; SPTR: Cytochrome b subunit of formate dehydrogenase-like protein; PFAM: Prokaryotic cytochrome b561
YP_004281207.1	InterPro IPR006311; KEGG: drt:Dret_2360 split soret cytochrome c precursor; SPTR: Split soret cytochrome c
YP_004281208.1	InterPro IPR010870; KEGG: ote:Oter_3355 phosphate-selective porin O and P; PFAM: phosphate-selective porin O/P; SPTR:  uncharacterized protein; PFAM: phosphate-selective porin O and P
YP_004281209.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281210.1	COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155; KEGG: mev:Metev_1703 PBS lyase heat domain-containing protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; SMART: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein; PFAM: HEAT repeat
YP_004281211.1	COGs: COG0583 transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: pmx:PERMA_0166 transcriptional regulator, LysR family; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_004281212.1	KEGG: pkn:PKH_120020 hypothetical protein; SPTR:  uncharacterized protein
YP_004281213.1	KEGG: mbu:Mbur_0467 hydroxylamine oxidase; SPTR: Hydroxylamine oxidoreductase
YP_004281214.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281215.1	KEGG: abu:Abu_1536 two-component sensor histidine kinase; SPTR: Two-component sensor histidine kinase
YP_004281216.1	COGs: COG2200 FOG: EAL domain; InterPro IPR000160: IPR001633; KEGG: cbe:Cbei_2527 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase/phosphodiesterase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004281217.1	COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: tal:Thal_1352 histone deacetylase; PFAM: Histone deacetylase superfamily; SPTR: Histone deacetylase; PFAM: Histone deacetylase domain
YP_004281218.1	COGs: COG0557 Exoribonuclease R; InterPro IPR011805: IPR004476: IPR013223: IPR001900: IPR 003029: IPR011129; KEGG: gur:Gura_2699 ribonuclease R; PFAM: ribonuclease II/R; ribonuclease B, N-terminal OB domain; ribosomal protein S1, RNA binding domain; SPTR: ribonuclease R; TIGRFAM: ribonuclease R, bacterial; ribonuclease II/ribonuclease R, bacteria; PFAM: RNB domain; ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases
YP_004281219.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281220.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281221.1	COGs: COG0352 Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; InterPro IPR003733; KEGG: pmx:PERMA_1410 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; SPTR: Thiamine-phosphate pyrophosphorylase; TIGRFAM: Thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_004281222.1	KEGG: pmx:PERMA_2011 hypothetical protein; SPTR:  membrane protein
YP_004281223.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dap:Dacet_1892 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_004281224.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140: IPR003439: IPR003593; KEGG: ddf:DEFDS_0328 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; ABC transporter transmembrane region
YP_004281225.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: aae:aq_2115 glucosyl transferase I; PFAM: Glycosyl transferase, group 1; SPTR: Glucosyl transferase I; PFAM: Glycosyl transferases group 1
YP_004281226.1	COGs: COG1378 transcriptional regulator protein; KEGG: mpi:Mpet_2597 transcriptional regulator TrmB; SPTR:  uncharacterized protein; PFAM: Sugar-specific transcriptional regulator TrmB
YP_004281227.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281228.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: aae:aq_626 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR:  8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_004281229.1	COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: mvn:Mevan_1359 hypothetical protein; PFAM: Uncharacterised protein family UPF0126; SPTR:  uncharacterized protein; PFAM: UPF0126 domain
YP_004281230.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002197; KEGG: slt:Slit_0013 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family
YP_004281231.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR012763: IPR003959: IPR003593; KEGG: pmx:PERMA_0534 DNA polymerase III, subunits gamma and tau; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit; DNA polymerase III, subunit gamma and tau
YP_004281232.1	COGs: COG0069 Glutamate synthase domain 2; InterPro IPR002932; KEGG: tmt:Tmath_1319 glutamate synthase (NADPH); PFAM: Glutamate synthase, central-C; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase (NADPH); PFAM: Conserved region in glutamate synthase
YP_004281233.1	COGs: COG1142 Fe-S-cluster-containing hydrogenase components 2; KEGG: gur:Gura_2493 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_004281234.1	COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: ttm:Tthe_0615 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Rubredoxin--NAD(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004281235.1	COGs: COG0067 Glutamate synthase domain 1; InterPro IPR000583; KEGG: csc:Csac_0577 glutamine amidotransferase, class-II; PFAM: Glutamine amidotransferase, class-II; SPTR: Glutamine amidotransferase class-II; PFAM: Glutamine amidotransferases class-II
YP_004281236.1	COGs: COG0070 Glutamate synthase domain 3; InterPro IPR002489; KEGG: chy:CHY_0708 GXGXG domain-containing protein; PFAM: Glutamate synthase, alpha subunit, C-terminal; SPTR: GXGXG domain protein; PFAM: GXGXG motif
YP_004281237.1	COGs: COG0133 tryptophan synthase subunit beta; HAMAP: tryptophan synthase subunit beta; InterPro IPR006654: IPR001926; KEGG: aae:aq_706 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: tryptophan synthase subunit beta 1; TIGRFAM: Tryptophan synthase, beta chain; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit
YP_004281238.1	COGs: COG2200 FOG: EAL domain; InterPro IPR000160: IPR001633; KEGG: sul:SYO3AOP1_1560 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase/phosphodiesterase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004281239.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR004176: IPR003959: IPR001943: IPR013093: IPR 019489: IPR003593; KEGG: tte:TTE2327 ATPase with chaperone activity, ATP-binding subunit; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPases with chaperone activity, ATP-binding subunit; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif
YP_004281240.1	COGs: COG0789 transcriptional regulator protein; InterPro IPR000551; KEGG: hps:HPSH_02190  heat shock protein (HspR); PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR:  heat shock protein (HspR); PFAM: MerR family regulatory protein
YP_004281241.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR011912: IPR001509; KEGG: aae:aq_344 ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: ADP-glyceromanno-heptose 6-epimerase; SPTR: ADP-L-glycero-D-manno-heptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase
YP_004281242.1	KEGG: pho:PH0926 mannosyl-3-phosphoglycerate phosphatase; SPTR: Mannosyl-3-phosphoglycerate phosphatase
YP_004281243.1	COGs: COG1465 alternative 3-dehydroquinate synthase; HAMAP: 3-dehydroquinate synthase; InterPro IPR002812; KEGG: hth:HTH_1199 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase, prokaryotic-type; SPTR: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase
YP_004281244.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078: IPR001608; KEGG: pmx:PERMA_0107 pyridoxal phosphate enzyme, YggS family; PFAM: Alanine racemase, N-terminal; SPTR: Pyridoxal phosphate enzyme, YggS family; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_004281245.1	KEGG: sto:ST1091 hypothetical protein; SPTR: DNA-directed RNA polymerase
YP_004281246.1	KEGG: tye:THEYE_A0630 hypothetical protein; SPTR:  uncharacterized protein
YP_004281247.1	COGs: COG1796 DNA polymerase IV (family X); InterPro IPR000445: IPR004013: IPR002054: IPR003583: IPR 003141; KEGG: aae:aq_1422 DNA polymerase beta family protein; PFAM: PHP, C-terminal; Helix-hairpin-helix motif; SMART: DNA-directed DNA polymerase, family X; Helix-hairpin-helix DNA-binding motif, class 1; polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase beta family protein; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family
YP_004281248.1	COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR003739: IPR007197: IPR006638; KEGG: aae:aq_454 hypothetical protein; PFAM: Radical SAM; PRIAM: Lysine 2,3-aminomutase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Uncharacterized KamA family protein aq_454; TIGRFAM: Protein of unknown function DUF160; PFAM: Radical SAM superfamily; TIGRFAM: KamA family protein
YP_004281249.1	KEGG: tva:TVAG_244940 viral A-type inclusion protein; SPTR:  uncharacterized protein
YP_004281250.1	COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: pmx:PERMA_1364 N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D, (NapE-hydrolyzing phospholipased) (NapE-pld); SPTR:  uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily
YP_004281251.1	KEGG: ptm:GSPATT00012292001 hypothetical protein; SPTR: Immunogenic protein P35
YP_004281252.1	COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterPro IPR000185: IPR011115: IPR011130: IPR011116; KEGG: tye:THEYE_A1021 preprotein translocase, SecA subunit; PFAM: SecA DEAD-like; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit
YP_004281253.1	COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR018392: IPR000064: IPR002482; KEGG: tye:THEYE_A1300 probable endopeptidase LytE; PFAM: NLP/P60; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: Probable endopeptidase LytE; PFAM: NlpC/P60 family; LysM domain
YP_004281254.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR011782: IPR001254: IPR001478; KEGG: gme:Gmet_1014 peptidase S1C, Do; PFAM: peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: peptidase S1C, Do; TIGRFAM: peptidase S1C, Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_004281255.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR014284: IPR009042: IPR007627: IPR007624: IPR 007630; KEGG: aae:aq_1452 RNA polymerase sigma factor RpoS; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004281256.1	COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: nis:NIS_0983 hypothetical protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR:  uncharacterized protein; PFAM: OmpA family
YP_004281257.1	COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: pmx:PERMA_0085 flagellar motor protein MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Flagellar motor protein MotB; PFAM: OmpA family
YP_004281258.1	COGs: COG1291 Flagellar motor component; InterPro IPR002898; KEGG: pmx:PERMA_0084 chemotaxis protein PomA; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Chemotaxis protein PomA; PFAM: MotA/TolQ/ExbB proton channel family
YP_004281259.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094: IPR004113; KEGG: sfu:Sfum_0534 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_004281260.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281261.1	COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: pmx:PERMA_0460 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase
YP_004281262.1	COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: pmx:PERMA_1098 uroporphyrinogen-III synthase; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD
YP_004281263.1	COGs: COG0181 Porphobilinogen deaminase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; InterPro IPR000860; KEGG: pmx:PERMA_0444 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; SPTR: Porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_004281264.1	COGs: COG0373 Glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; InterPro IPR000343: IPR015895: IPR006151: IPR015896; KEGG: gur:Gura_0360 glutamyl-tRNA reductase; PFAM: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal; PRIAM: Glutamyl-tRNA reductase; SPTR: Glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase
YP_004281265.1	COGs: COG4137 ABC-type uncharacterized transport system permease component; InterPro IPR002541; KEGG: gbm:Gbem_0406 cytochrome c-type biogenesis protein CcsB; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c-type biogenesis protein CcsB; PFAM: Cytochrome C assembly protein
YP_004281266.1	COGs: COG0710 3-dehydroquinate dehydratase; HAMAP: Dehydroquinase class I; InterPro IPR001381; KEGG: pmx:PERMA_0321 3-dehydroquinate dehydratase, type I; PFAM: Dehydroquinase class I; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase; TIGRFAM: Dehydroquinase class I; PFAM: type I 3-dehydroquinase; TIGRFAM: 3-dehydroquinate dehydratase, type I
YP_004281267.1	COGs: COG1993 conserved hypothetical protein; InterPro IPR003793; KEGG: nis:NIS_1373 hypothetical protein; PFAM: Protein of unknown function DUF190; SPTR:  uncharacterized protein; PFAM: Uncharacterized ACR, COG1993
YP_004281268.1	COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR013374: IPR007831: IPR001482; KEGG: ddf:DEFDS_1109 type IV pilus assembly protein PilB; PFAM: type II secretion system protein E; General secretory system II, protein E, N-terminal; SPTR: type IV pilus assembly protein PilB; TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: GSPII_E N-terminal domain; type II/IV secretion system protein; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E
YP_004281269.1	COGs: COG1318 transcriptional regulator protein; KEGG: aae:aq_2056 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM:  regulatory domain-containing; TIGRFAM: probable regulatory domain
YP_004281270.1	COGs: COG0304 3-oxoacyl-ACP synthase; InterPro IPR017568: IPR014030: IPR014031; KEGG: hya:HY04AAS1_0511 3-oxoacyl-ACP synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-ACP synthase 2; TIGRFAM: 3-oxoacyl-ACP synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II
YP_004281271.1	COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: ribonuclease III, bacterial; InterPro IPR011907: IPR000999: IPR001159; KEGG: hya:HY04AAS1_0512 ribonuclease III; PFAM: ribonuclease III; Double-stranded RNA binding; PRIAM: ribonuclease III; SMART: ribonuclease III; Double-stranded RNA binding; SPTR: ribonuclease 3; TIGRFAM: ribonuclease III, bacterial; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial
YP_004281272.1	COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: aae:aq_1718 MAF protein; PFAM: Maf-like protein; SPTR: Maf-like protein aq_1718; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_004281273.1	KEGG: pfa:PF11_0207 conserved Plasmodium protein; SPTR: Uncharacterized protein PF11_0207
YP_004281274.1	InterPro IPR001789; KEGG: ddf:DEFDS_0166 hypothetical protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR:  uncharacterized protein; PFAM: Response regulator receiver domain
YP_004281275.1	COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: toc:Toce_2117 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_004281276.1	COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; HAMAP: Beta-hydroxyacyl-ACP dehydratase FabZ; InterPro IPR010084: IPR013114; KEGG: gbm:Gbem_0842 beta-hydroxyacyl-ACP dehydratase FabZ; PFAM: Beta-hydroxyacyl-ACP dehydratase, FabA/FabZ; SPTR: (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: Beta-hydroxyacyl-ACP dehydratase FabZ; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-ACP dehydratase FabZ
YP_004281277.1	COGs: COG1043 Acyl-(acyl carrier protein); HAMAP:Acyl-ACP--UDP-N-acetylgluc osamineO-acyltransferase; InterPro IPR010137: IPR001451; KEGG: lba:Lebu_1274 UDP-N-acetylglucosamine acyltransferase; PRIAM:Acyl-ACP--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:Acyl-ACP-UDP-N-acetylglucos amineO-acyltransferase; TIGRFAM:Acyl-ACP--UDP-N-acetylgl ucosamineO-acyltransferase; TIGRFAM: acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
YP_004281278.1	COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: deg:DehalGT_1421 metallo-beta-lactamase; SPTR: Beta-lactamase domain-containing protein
YP_004281279.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR013099: IPR003148: IPR006037; KEGG: aae:aq_303 hypothetical protein; PFAM: Regulator of K+ conductance, N-terminal; Ion transport 2; Regulator of K+ conductance, C-terminal; SPTR:  uncharacterized protein; PFAM: Ion channel; TrkA-N domain; TrkA-C domain
YP_004281280.1	KEGG: saf:SULAZ_1434 MacA; SPTR: MacA
YP_004281281.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR001959: IPR010095; KEGG: sul:SYO3AOP1_0218 transposase IS605 OrfB; PFAM: transposase, IS605 OrfB, C-terminal; transposase, probable, IS891/IS1136/IS1341; SPTR: Probable transposase; PFAM:  transposase DNA-binding domain; Probable transposase
YP_004281282.1	InterPro IPR007412; KEGG: ckr:CKR_1862 hypothetical protein; PFAM: Anti-sigma-28 factor, FlgM; SPTR:  uncharacterized protein; PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM
YP_004281283.1	COGs: COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; InterPro IPR006135; KEGG: hor:Hore_19930 FlhB domain protein; PFAM: type III secretion exporter; SPTR: FlhB domain protein; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein
YP_004281284.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: tcx:Tcr_0109 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase (GGDEF domain); TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004281285.1	COGs: COG2603 ATPase; InterPro IPR017582: IPR001763; KEGG: chy:CHY_1162 tRNA 2-selenouridine synthase; SMART: Rhodanese-like; SPTR: Probable ATP /GTP binding protein; TIGRFAM: tRNA 2-selenouridine synthase; PFAM: Archaeal ATPase; Rhodanese-like domain; TIGRFAM: tRNA 2-selenouridine synthase
YP_004281286.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: tga:TGAM_0938 SAM-dependent methyltransferase; PFAM: methyltransferase type 11; SPTR: methyltransferase type 11; PFAM: methyltransferase domain
YP_004281287.1	COGs: COG1630 conserved hypothetical protein; InterPro IPR018977; KEGG: mru:mru_1103 hypothetical protein; PFAM: NurA domain; SPTR:  uncharacterized protein; PFAM: NurA domain
YP_004281288.1	COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR001451; KEGG: saf:SULAZ_1721 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; PRIAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; SPTR: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (Tetrahydrodipicolinate N-succinyltransferase) (THPsuccinyltransferase) (Tetrahydropicolinate succinylase); TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
YP_004281289.1	COGs: COG0696 phosphoglyceromutase; HAMAP: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; InterPro IPR005995: IPR011258: IPR006124; KEGG: tpd:Teth39_0734 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; PRIAM: phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
YP_004281290.1	COGs: COG0101 Pseudouridylate synthase; HAMAP: Pseudouridine synthase I, TruA; InterPro IPR001406: IPR020097; KEGG: ttm:Tthe_0466 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_004281291.1	COGs: COG2844 UTP:GlnB (protein PII) uridylyltransferase; InterPro IPR010043: IPR013546: IPR006674: IPR002912: IPR 003607; KEGG: saf:SULAZ_1071 protein-P-II uridylyltransferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; PRIAM: [Protein-PII] uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Protein-P-II uridylyltransferase; TIGRFAM: Protein-PII uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; HD domain; TIGRFAM: [Protein-PII] uridylyltransferase
YP_004281292.1	COGs: COG1502 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: hth:HTH_1822  endonuclease; SMART: phospholipase D/transphosphatidylase; SPTR:  endonuclease
YP_004281293.1	InterPro IPR004692; KEGG: nwa:Nwat_0555 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_004281294.1	COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: chy:CHY_0282 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_004281295.1	COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterPro IPR004487: IPR010603: IPR013093: IPR019489: IPR 003593; KEGG: tal:Thal_0579 ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_004281296.1	COGs: COG2206 HD-GYP domain; InterPro IPR006675: IPR006674: IPR003607; KEGG: tme:Tmel_0998 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_004281297.1	COGs: COG0135 phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: gsu:GSU2378 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_004281298.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: tal:Thal_1363 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family
YP_004281299.1	COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439: IPR003593; KEGG: mif:Metin_1116 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC
YP_004281300.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825; KEGG: mfe:Mefer_1236 SufBD protein; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: SufBD protein; PFAM: Uncharacterized protein family (UPF0051)
YP_004281301.1	COGs: COG2033 Desulfoferrodoxin; InterPro IPR002742; KEGG: fno:Fnod_0468 desulfoferrodoxin ferrous iron-binding region; PFAM: Desulfoferrodoxin, ferrous iron-binding domain; SPTR: Desulfoferrodoxin ferrous iron-binding region; TIGRFAM: Desulfoferrodoxin, ferrous iron-binding domain; PFAM: Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin ferrous iron-binding domain
YP_004281302.1	COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: toc:Toce_1576 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; SPTR: DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase
YP_004281303.1	InterPro IPR006935; KEGG: toc:Toce_1575 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/type III, Res subunit; SPTR: type III restriction protein res subunit; PFAM: type III restriction enzyme, res subunit
YP_004281304.1	COGs: COG3328 transposase and inactivated derivatives; InterPro IPR001207; KEGG: gwc:GWCH70_3446 transposase mutator type; PFAM: transposase, mutator type; SPTR: transposase mutator type; PFAM: transposase, Mutator family
YP_004281305.1	COGs: COG0307 riboflavin synthase alpha chain; InterPro IPR001783; KEGG: sul:SYO3AOP1_0177 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; PRIAM: riboflavin synthase; SPTR: riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit
YP_004281306.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281307.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: saf:SULAZ_0489 exopolyphosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Exopolyphosphatase; PFAM: Ppx/GppA phosphatase family
YP_004281308.1	COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: cag:Cagg_1110 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_004281309.1	COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: aae:aq_1244 hypothetical protein; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: Selenocysteine synthase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004281310.1	COGs: COG1985 Pyrimidine reductase riboflavin biosynthesis; InterPro IPR011549: IPR006401: IPR002734; KEGG: aae:aq_436 riboflavin specific deaminase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; PRIAM: 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: riboflavin specific deaminase; TIGRFAM:2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine 1-reductase, archaeal; riboflavin-specific deaminase, C-terminal; PFAM: RibD C-terminal domain; TIGRFAM: riboflavin-specific deaminase C-terminal domain; 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal
YP_004281311.1	COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: pmx:PERMA_1039 oligopeptide transport system permease AppB; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Oligopeptide transport system permease AppB; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004281312.1	COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: saf:SULAZ_1080 dipeptide transport system permease DppC; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Dipeptide transport system permease DppC; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004281313.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR003524: IPR018480: IPR018481; KEGG: gbm:Gbem_0488 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_004281314.1	InterPro IPR001845; KEGG: tko:TK1041 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Regulatory protein ArsR; PFAM: Bacterial regulatory protein, arsR family
YP_004281315.1	COGs: COG1045 serine acetyltransferase; InterPro IPR005881: IPR001451; KEGG: ddf:DEFDS_2169 serine O-acetyltransferase; PRIAM: serine O-acetyltransferase; SPTR: serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase, N-terminal; Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase
YP_004281316.1	InterPro IPR007730; KEGG: ehi:EHI_129520 hypothetical protein; PFAM: Sporulation related domain; SPTR:  uncharacterized protein; PFAM: Sporulation related domain
YP_004281317.1	COGs: COG0059 Ketol-acid reductoisomerase; HAMAP: Ketol-acid reductoisomerase; InterPro IPR013023: IPR013116: IPR000506; KEGG: pmx:PERMA_0155 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase
YP_004281318.1	COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR004789: IPR002912: IPR019455; KEGG: saf:SULAZ_0083 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; SPTR: Acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit
YP_004281319.1	COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012846: IPR012001: IPR012000: IPR011766; KEGG: tal:Thal_1586 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type
YP_004281320.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805: IPR015890; KEGG: bcg:BCG9842_B5240 para-aminobenzoate synthase, component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; PRIAM: Anthranilate synthase; SPTR: Para-aminobenzoate synthase component 1; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme
YP_004281321.1	KEGG: hth:HTH_1529 hypothetical protein; SPTR:  uncharacterized protein
YP_004281322.1	COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR000644: IPR004800: IPR001347; KEGG: pmx:PERMA_0165 arabinose 5-phosphate isomerase; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; PRIAM: Arabinose-5-phosphate isomerase; SMART: Cystathionine beta-synthase, core; SPTR: Arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein
YP_004281323.1	COGs: COG4783  Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: sul:SYO3AOP1_0581 peptidase M48 Ste24p; PFAM: peptidase M48; SPTR: peptidase M48 Ste24p; PFAM: peptidase family M48
YP_004281324.1	COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394: IPR007046: IPR007634; KEGG: aoe:Clos_0967 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma factor 54; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor
YP_004281325.1	COGs: COG1391 Glutamine synthetase adenylyltransferase; InterPro IPR005190: IPR013546; KEGG: pmx:PERMA_0170 glutamate ammonia ligase adenylyl-transferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Glutamate-ammonia ligase adenylyltransferase; PRIAM: [Glutamate--ammonia-ligase] adenylyltransferase; SPTR: Glutamate ammonia ligase adenylyl-transferase; PFAM: GlnD PII-uridylyltransferase; Glutamate-ammonia ligase adenylyltransferase
YP_004281326.1	KEGG: ckr:CKR_2928 hypothetical protein; SPTR:  uncharacterized protein
YP_004281327.1	COGs: COG2112 Ser/Thr protein kinase; InterPro IPR001245; KEGG: mfe:Mefer_0274 tyrosine protein kinase; PFAM: serine/threonine/tyrosine-protein kinase; SPTR: Tyrosine protein kinase; PFAM: Protein kinase domain
YP_004281328.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281329.1	HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: chl:Chy400_0126 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type
YP_004281330.1	COGs: COG0594 RNase P protein component; HAMAP: ribonuclease P; InterPro IPR000100; KEGG: ddf:DEFDS_0347 ribonuclease P protein component; PFAM: ribonuclease P; SPTR: ribonuclease P protein component; TIGRFAM: ribonuclease P; manually curated; PFAM: ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial
YP_004281331.1	COGs: COG0759 conserved hypothetical protein; HAMAP: Protein of unknown function DUF37; InterPro IPR002696; KEGG: aae:aq_175a hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: UPF0161 protein aq_175.1; TIGRFAM: Protein of unknown function DUF37; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD
YP_004281332.1	COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR019998: IPR020001: IPR001708; KEGG: saf:SULAZ_0535 60 kDa inner-membrane protein; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: 60 kDa inner-membrane protein; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain
YP_004281333.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644: IPR002550: IPR005170; KEGG: pmx:PERMA_1603 CBS/transporter-associated domain protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; transporter-associated domain; SMART: Cystathionine beta-synthase, core; SPTR: CBS/transporter-associated domain protein; PFAM: CBS domain; Domain of unknown function DUF21; transporter associated domain
YP_004281334.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644: IPR002550: IPR005170; KEGG: hoh:Hoch_2560 protein of unknown function DUF21; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; transporter-associated domain; SMART: Cystathionine beta-synthase, core; SPTR:  uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21; transporter associated domain
YP_004281335.1	COGs: COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase); HAMAP: phosphoribosylglycinamide formyltransferase 2; InterPro IPR005862: IPR003135; KEGG: pmx:PERMA_1489 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; PRIAM: phosphoribosylaminoimidazole carboxylase; SPTR: phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein; phosphoribosylglycinamide formyltransferase 2
YP_004281336.1	COGs: COG0679 permease; InterPro IPR004776; KEGG: csa:Csal_1038 auxin efflux carrier; PFAM: Auxin efflux carrier; SPTR: Conserved hypothetical membrane protein, auxin efflux carrier family; PFAM: Membrane transport protein
YP_004281337.1	COGs: COG3276 Selenocysteine-specific translation elongation factor; InterPro IPR005225: IPR004535: IPR000795: IPR004161: IPR 015191; KEGG: pth:PTH_1427 selenocysteine-specific translation elongation factor; PFAM: Protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor SelB, winged helix, type 3; SPTR: Selenocysteine-specific translation elongation factor; TIGRFAM: translation elongation factor, selenocysteine-specific; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; Elongation factor SelB, winged helix; TIGRFAM: selenocysteine-specific elongation factor SelB; small GTP-binding protein domain; translation elongation factor TU
YP_004281338.1	COGs: COG1418 HD superfamily hydrolase; HAMAP: 2,3-cyclic-nucleotide 2-phosphodiesterase; InterPro IPR004087: IPR003607: IPR017705: IPR006675: IPR 018111: IPR006674; KEGG: tit:Thit_1166 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD domain; K Homology; SPTR: Metal dependent phosphohydrolase; TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG
YP_004281339.1	COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: sul:SYO3AOP1_1682 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_004281340.1	KEGG: tye:THEYE_A0621 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Cell division protein ZapA
YP_004281341.1	COGs: COG0072 phenylalanyl-tRNA synthetase beta subunit; HAMAP: phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterPro IPR004532: IPR002547: IPR005146: IPR005147: IPR 005121; KEGG: tte:TTE1688 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding domain; tRNA synthetase, B5; phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: phenylalanyl-tRNA synthetase beta chain; TIGRFAM: phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial
YP_004281342.1	COGs: COG0016 phenylalanyl-tRNA synthetase alpha subunit; HAMAP: phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004529: IPR004188: IPR002319; KEGG: pca:Pcar_1422 phenylalanyl-tRNA synthetase subunit alpha; PFAM: phenylalanyl-tRNA synthetase alpha chain; phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit
YP_004281343.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR010095: IPR001959; KEGG: mev:Metev_2371 IS605 OrfB family transposase; PFAM: transposase, probable, IS891/IS1136/IS1341; transposase, IS605 OrfB, C-terminal; SPTR: transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM: Helix-turn-helix domain; transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004281344.1	COGs: COG1943 transposase and inactivated derivatives; InterPro IPR002686; KEGG: aar:Acear_1998 transposase IS200-family protein; PFAM: transposase IS200-like; SPTR: transposase IS200-family protein; manually curated; PFAM: transposase IS200 like
YP_004281345.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037: IPR006016; KEGG: pmx:PERMA_0592 TrkA-N domain family protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; UspA; SPTR: TrkA-N domain family protein; PFAM: TrkA-N domain; Universal stress protein family; TrkA-C domain
YP_004281346.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: pmx:PERMA_0591 hypothetical protein; PFAM: Cation/H+ exchanger; SPTR:  uncharacterized protein; PFAM: Sodium/hydrogen exchanger family
YP_004281347.1	COGs: COG1031 Fe-S oxidoreductase; InterPro IPR006638: IPR007197; KEGG: mev:Metev_1381 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004281348.1	COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase; InterPro IPR002301: IPR002300: IPR013155: IPR010663; KEGG: pmx:PERMA_0684 isoleucine#tRNA ligase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; DNA glycosylase/AP lyase/isoleucyl tRNA synthetase, zinc finger domain; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Zinc finger found in FPG and IleRS; TIGRFAM: isoleucyl-tRNA synthetase
YP_004281349.1	COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: tye:THEYE_A0381 DNA repair protein; PFAM: Uncharacterised protein family, RadC-like; SPTR: DNA repair protein; TIGRFAM: Uncharacterised protein family, RadC-like; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc
YP_004281350.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011913: IPR011611; KEGG: ddf:DEFDS_0511 ADP-heptose synthase; PFAM: Carbohydrate/purine kinase; SPTR: ADP-heptose synthase; TIGRFAM: RfaE bifunctional protein, domain I; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I
YP_004281351.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063; KEGG: aae:aq_1333 hypothetical protein; PFAM: PP-loop; SPTR:  uncharacterized protein; PFAM: PP-loop family; TIGRFAM: conserved hypothetical protein TIGR00269
YP_004281352.1	COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: geo:Geob_3054 protein of unknown function DUF178; PFAM: Protein of unknown function DUF178; SPTR:  uncharacterized protein; PFAM:  periplasminc binding protein (DUF178)
YP_004281353.1	KEGG: ppd:Ppro_1414 hypothetical protein; SPTR:  uncharacterized protein
YP_004281354.1	KEGG: dal:Dalk_0743 hypothetical protein; SPTR:  uncharacterized protein
YP_004281355.1	COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: pth:PTH_0920 L-fuculose phosphate aldolase; PFAM: Class II aldolase/adducin, N-terminal; SPTR: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; PFAM: Class II Aldolase and Adducin N-terminal domain
YP_004281356.1	COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: hth:HTH_0664 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase
YP_004281357.1	COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR006260; KEGG: pmx:PERMA_0422 TonB family C-domain protein; PFAM: TonB, C-terminal; SPTR: TonB family C-domain protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004281358.1	COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004524: IPR004365: IPR004364: IPR004115; KEGG: aae:aq_1677 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_004281359.1	COGs: COG2406 Protein distantly related to ferritins; InterPro IPR008331; KEGG: paa:Paes_2196 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein; PFAM: Ferritin-like domain
YP_004281360.1	KEGG: sfu:Sfum_1304 FmdB family regulatory protein; SPTR:  regulatory protein, FmdB family; PFAM: Zinc ribbon domain
YP_004281361.1	COGs: COG2992 Uncharacterized FlgJ-related protein; InterPro IPR013338; KEGG: pmx:PERMA_0942 BAX protein; SMART: Lysozyme domain, subfamily 2; SPTR:  uncharacterized protein; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
YP_004281362.1	COGs: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I C-terminal domain; InterPro IPR004647; KEGG: nam:NAMH_1232 C-terminal fumarate hydratase, class I; PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PRIAM: Fumarate hydratase; SPTR: C-terminal fumarate hydratase, class I; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region
YP_004281363.1	COGs: COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; HAMAP: L-seryl-tRNA selenium transferase; InterPro IPR004534: IPR018319; KEGG: cdl:CDR20291_2387 selenocysteine synthase; PFAM: Pyridoxal phosphate-dependent transferase; PRIAM: L-seryl-tRNA(Sec) selenium transferase; SPTR: L-seryl-tRNA(Sec) selenium transferase; TIGRFAM: L-seryl-tRNA selenium transferase; PFAM: Selenocysteine synthase N terminal; L-seryl-tRNA selenium transferase; TIGRFAM: seryl-tRNA(sec) selenium transferase
YP_004281364.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: glo:Glov_1115 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR:  outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004281365.1	KEGG: fps:FP2089 ABC transporter permease; SPTR:  uncharacterized protein
YP_004281366.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: sul:SYO3AOP1_0767 diguanylate cyclase with PAS/PAC sensor; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004281367.1	InterPro IPR002482: IPR018392; KEGG: gsu:GSU1464 LysM domain-containing protein; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: LysM domain protein; PFAM: LysM domain
YP_004281368.1	KEGG: cpf:CPF_2138 hypothetical protein; SPTR: RNA polymerase Rpb1 C-terminal repeat domain-containing protein
YP_004281369.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: nde:NIDE3916 RND-type efflux transporter, transmembrane pump; PFAM: Acriflavin resistance protein; SPTR: RND-type efflux transporter, transmembrane pump; PFAM: AcrB/AcrD/AcrF family
YP_004281370.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: pmx:PERMA_1480 acriflavin resistance protein AcrE; PFAM: Secretion protein HlyD; SPTR: Acriflavin resistance protein AcrE; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004281371.1	COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991; KEGG: hya:HY04AAS1_1393 glutamine amidotransferase class-I; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Glutamine amidotransferase class-I; PFAM: Glutamine amidotransferase class-I
YP_004281372.1	COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: tal:Thal_0403 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62, modulator of DNA gyrase; SPTR: peptidase U62 modulator of DNA gyrase; PFAM:  modulator of DNA gyrase
YP_004281373.1	COGs: COG0171 NAD synthase; HAMAP: NH(3)-dependent NAD(+) synthetase; InterPro IPR003694; KEGG: gsu:GSU0652 NAD synthetase; PRIAM: NAD(+) synthase; SPTR: NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase
YP_004281374.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: gme:Gmet_2863 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase
YP_004281375.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: fbc:FB2170_08359 outer membrane surface antigen protein; PFAM: Surface antigen variable number; SPTR: Outer membrane surface antigen protein; PFAM: Surface antigen variable number repeat
YP_004281376.1	COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: ter:Tery_5028 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic; SPTR:  uncharacterized protein; PFAM: Prokaryotic diacylglycerol kinase
YP_004281377.1	COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR003607: IPR006675: IPR006674; KEGG: gur:Gura_1781 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: HDIG; PFAM: HD domain; 7TM-HD extracellular; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG
YP_004281378.1	COGs: COG1702 phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: hth:HTH_0071 phosphate starvation-inducible protein; PFAM: PhoH-like protein; SPTR: phosphate starvation-inducible protein; PFAM: PhoH-like protein
YP_004281379.1	COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: mfe:Mefer_0661 SMC domain protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein; PFAM: Rad50 zinc hook motif
YP_004281380.1	SPTR:  uncharacterized protein
YP_004281381.1	COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: aae:aq_2077 SNF family Na(+)/neurotransmitter symporter; PFAM: Sodium:neurotransmitter symporter; SPTR: transporter; PFAM: Sodium:neurotransmitter symporter family
YP_004281382.1	COGs: COG0731 Fe-S oxidoreductase; InterPro IPR007197; KEGG: mpi:Mpet_0969 radical SAM domain-containing protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004281383.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184; KEGG: tye:THEYE_A1041 outer membrane protein, OMP85 family, PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein, OMP85 family, ; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_004281384.1	KEGG: pfa:MAL8P1.49 conserved Plasmodium membrane protein, unknown function; SPTR:  uncharacterized protein
YP_004281385.1	KEGG: rbi:RB2501_01595 hypothetical protein; SPTR:  uncharacterized protein; PFAM: septum formation initiator
YP_004281386.1	COGs: COG2952 conserved hypothetical protein; InterPro IPR007463; KEGG: saf:SULAZ_0295 hypothetical protein; PFAM: Protein of unknown function DUF507; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF507)
YP_004281387.1	InterPro IPR019734: IPR001440; KEGG: tet:TTHERM_01229030 SLEI family protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat family protein; PFAM: Tetratricopeptide repeat
YP_004281388.1	COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterPro IPR014001: IPR001650: IPR004807: IPR006935: IPR 001943; KEGG: saf:SULAZ_0495 excinuclease ABC subunit B; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit
YP_004281389.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281390.1	COGs: COG2452 site-specific integrase-resolvase; InterPro IPR000551: IPR006119; KEGG: tte:TTE0714 site-specific integrase-resolvase; PFAM: Resolvase, N-terminal; HTH transcriptional regulator, MerR; SPTR: Predicted site-specific integrase-resolvase; manually curated; PFAM: Resolvase, N terminal domain
YP_004281391.1	InterPro IPR010095; KEGG: hth:HTH_1865 transposase; PFAM: transposase, IS605 OrfB, C-terminal; SPTR: transposase; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM: Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004281392.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281393.1	COGs: COG2835 conserved hypothetical protein; HAMAP: ycaR; InterPro IPR005651; KEGG: hya:HY04AAS1_0488 protein of unknown function DUF343; PFAM: Protein of unknown function DUF343; SPTR:  uncharacterized protein; PFAM: Trm112p-like protein
YP_004281394.1	KEGG: hch:HCH_03158 hypothetical protein
YP_004281395.1	COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR006638: IPR004383: IPR007197; KEGG: pmx:PERMA_0574 ribosomal RNA large subunit methyltransferase N; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR:  uncharacterized protein; TIGRFAM: ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family
YP_004281396.1	COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR008333: IPR001433: IPR019480; KEGG: pab:PAB1737 ferredoxin-NADP(+) reductase subunit alpha; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR:  uncharacterized protein; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain
YP_004281397.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR006004: IPR013027; KEGG: cts:Ctha_1864  oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase (NADPH), homotetrameric; TIGRFAM: Glutamate synthase (NADPH), homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric
YP_004281398.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR001959: IPR010095; KEGG: sul:SYO3AOP1_0218 transposase IS605 OrfB; PFAM: transposase, IS605 OrfB, C-terminal; transposase, probable, IS891/IS1136/IS1341; SPTR: Probable transposase; PFAM:  transposase DNA-binding domain; Probable transposase
YP_004281399.1	COGs: COG0532 translation initiation factor 2 (IF-2; GTPase); InterPro IPR000178: IPR005225: IPR006847: IPR000795: IPR 004161; KEGG: tte:TTE1393 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; translation initiation factor IF-2, N-terminal; translation elongation factor EFTu/EF1A, domain 2; SPTR: translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; translation-initiation factor 2; translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2
YP_004281400.1	COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: dps:DP2807 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein HMPREF0554_1189; manually curated; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252
YP_004281401.1	COGs: COG0164 ribonuclease HII; InterPro IPR001352; KEGG: pmx:PERMA_0363 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: ribonuclease H; SPTR: ribonuclease; PFAM: ribonuclease HII
YP_004281402.1	COGs: COG0335 ribosomal protein L19; HAMAP: ribosomal protein L19; InterPro IPR001857; KEGG: saf:SULAZ_0179 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_004281403.1	COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR005653: IPR007543; KEGG: geo:Geob_1869 organic solvent tolerance protein; PFAM: Organic solvent tolerance protein, C-terminal; Organic solvent tolerance-like, N-terminal; SPTR: Organic solvent tolerance protein; PFAM: Organic solvent tolerance protein
YP_004281404.1	KEGG: chy:CHY_0896 hypothetical protein; SPTR:  uncharacterized protein; PFAM: poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
YP_004281405.1	COGs: COG0661 unusual protein kinase; InterPro IPR002290: IPR004147; KEGG: nth:Nther_0295 ABC-1 domain protein; PFAM: ABC-1; SMART: serine/threonine-protein kinase domain; SPTR: ABC-1 domain protein; PFAM: Lipopolysaccharide core biosynthesis protein (WaaY); ABC1 family
YP_004281406.1	COGs: COG4752 conserved hypothetical protein; InterPro IPR019230; KEGG: chy:CHY_1429 hypothetical protein; PFAM: Protein of unknown function DUF2168; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2168)
YP_004281407.1	COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; InterPro IPR001228; KEGG: ppd:Ppro_2969 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_004281408.1	COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR006596: IPR002716; KEGG: dau:Daud_0185 PilT domain-containing protein; PFAM: PilT protein, N-terminal; SMART: Nucleotide binding protein, PINc; SPTR: PilT protein domain protein; PFAM: PIN domain
YP_004281409.1	COGs: COG1329 transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: tjr:TherJR_0251 transcriptional regulator, CarD family; PFAM: transcription factor CarD; SPTR: transcriptional regulator, CarD family; PFAM: CarD-like/TRCF domain
YP_004281410.1	COGs: COG0616 Periplasmic serine protease (ClpP class); KEGG: aae:aq_814 hypothetical protein; SPTR:  uncharacterized protein; PFAM: serine dehydrogenasease
YP_004281411.1	COGs: COG0044 dihydroorotase and related cyclic amidohydrolase; InterPro IPR004722: IPR006680; KEGG: gme:Gmet_1770 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: dihydroorotase; SPTR: dihydroorotase; TIGRFAM: dihydroorotase multifunctional complex type; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type
YP_004281412.1	KEGG: gur:Gura_0469 hypothetical protein; SPTR:  uncharacterized protein
YP_004281413.1	COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase, eukaryotic; InterPro IPR002082: IPR006132: IPR006131; KEGG: tjr:TherJR_1833 aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_004281414.1	COGs: COG0141 histidinol dehydrogenase; HAMAP: histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: aae:aq_782 histidinol dehydrogenase; PFAM: histidinol dehydrogenase, prokaryotic-type; PRIAM: histidinol dehydrogenase; SPTR: histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase, prokaryotic-type; PFAM: histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_004281415.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: sat:SYN_00981 response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator with a winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal
YP_004281416.1	COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: tye:THEYE_A1467 N-acetylmuramoyl-L-alanine amidase, family 3; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase, family 3; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes
YP_004281417.1	COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; InterPro IPR006264: IPR001986; KEGG: pmx:PERMA_1722 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_004281418.1	KEGG: cpc:Cpar_1279 protein of unknown function DUF134; SPTR:  uncharacterized protein
YP_004281419.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: dhd:Dhaf_4442 aminotransferase class IV; PFAM: Aminotransferase, class IV; SPTR: Aminotransferase class IV; PFAM: Aminotransferase class IV
YP_004281420.1	InterPro IPR003717; KEGG: cdl:CDR20291_2327 DNA repair protein; PFAM: Recombination protein O, RecO; SPTR: DNA repair protein recO; TIGRFAM: Recombination protein O, RecO; PFAM: Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO
YP_004281421.1	COGs: COG0012 GTPase probable translation factor; InterPro IPR004396: IPR002917: IPR013029; KEGG: aae:aq_609 GTP-dependent nucleic acid-binding protein EngD; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF; small GTP-binding protein domain
YP_004281422.1	KEGG: pfh:PFHG_03809 hypothetical protein; SPTR: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_0
YP_004281423.1	KEGG: mbu:Mbur_0467 hydroxylamine oxidase; SPTR: Hydroxylamine oxidoreductase
YP_004281424.1	COGs: COG2855 membrane protein; InterPro IPR004630: IPR018383; KEGG: sdl:Sdel_0285 uncharacterized protein family UPF0324; PFAM: Uncharacterised protein family UPF0324, prokaryote; SPTR:  uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0324, bacteria; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein
YP_004281425.1	COGs: COG2131 deoxycytidylate deaminase; InterPro IPR002125; KEGG: dak:DaAHT2_1281 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004281426.1	COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR003170: IPR006094: IPR011601; KEGG: aae:aq_520 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_004281427.1	COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR004468: IPR017456: IPR000991; KEGG: toc:Toce_2181 CTP synthase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase
YP_004281428.1	COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro IPR004528: IPR003329; KEGG: coc:Coch_0027 3-deoxy-D-manno-octulosonatecytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase
YP_004281429.1	COGs: COG0047 phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; HAMAP: phosphoribosylformylglycinamidine synthase I; InterPro IPR010075; KEGG: ddf:DEFDS_1605 phosphoribosylformylglycinamidine synthase large subunit; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: phosphoribosylformylglycinamidine synthase, large subunit; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I
YP_004281430.1	COGs: COG1828 phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: bse:Bsel_0692 phosphoribosylformylglycinamidine synthase, PurS; PFAM: phosphoribosylformylglycinamidine synthetase, PurS subunit; SPTR: phosphoribosylformylglycinamidine synthase, purS; TIGRFAM: phosphoribosylformylglycinamidine synthetase, PurS subunit; PFAM: phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein
YP_004281431.1	InterPro IPR003675; KEGG: pmx:PERMA_0789 CAAX amino protease; PFAM: Abortive infection protein; SPTR: Caax amino protease; PFAM: CAAX amino terminal protease family
YP_004281432.1	COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR004520: IPR005225: IPR018948: IPR002917; KEGG: aar:Acear_2349 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase trmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein domain
YP_004281433.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: pmx:PERMA_0459 NlpD fragment; PFAM: peptidase M23; SPTR: Membrane protein; PFAM: septum formation initiator; peptidase family M23
YP_004281434.1	COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: dak:DaAHT2_0091 protein of unknown function DUF583; PFAM: Protein of unknown function DUF583; SPTR:  uncharacterized protein; PFAM: Protein of unknown function, DUF583
YP_004281435.1	COGs: COG1424 Pimeloyl-CoA synthetase; InterPro IPR005499; KEGG: mja:MJ_1297 6-carboxyhexanoate--CoA ligase; PFAM: 6-carboxyhexanoate--CoA ligase; PRIAM: 6-carboxyhexanoate--CoA ligase; SPTR: 6-carboxyhexanoate--CoA ligase; PFAM: 6-carboxyhexanoate--CoA ligase; TIGRFAM: 6-carboxyhexanoate--CoA ligase
YP_004281436.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: gur:Gura_2065 MscS mechanosensitive ion channel; PFAM: Mechanosensitive ion channel MscS; SPTR: MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel
YP_004281437.1	COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: cth:Cthe_1343 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_004281438.1	COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: sun:SUN_1281 MarC family multiple antibiotic resistance protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: Multiple antibiotic resistance (MarC)-related protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_004281439.1	COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR006371: IPR000537; KEGG: tjr:TherJR_1773 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase related; PFAM: UbiA prenyltransferase family; TIGRFAM:  4-hydroxybenzoate polyprenyltransferase
YP_004281440.1	COGs: COG0647 sugar phosphatase of the HAD superfamily; InterPro IPR006357; KEGG: pmx:PERMA_1466 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; TIGRFAM: Haloacid Dehalogenase Superfamily Class (subfamily) IIA
YP_004281441.1	COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: aae:aq_1330 proton/sodium-glutamate symport protein; PFAM: Sodium:dicarboxylate symporter; SPTR: Similar to sodium or proton dependent glutamate transport protein; PFAM: Sodium:dicarboxylate symporter family
YP_004281442.1	COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004646; KEGG: aae:aq_1780 fumarate hydratase; PFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; PRIAM: Fumarate hydratase; SPTR: Fumarate hydratase (Fumarase); TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; PFAM: Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
YP_004281443.1	COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase, NAD-dependent; InterPro IPR011275: IPR001236; KEGG: aba:Acid345_1951 malate dehydrogenase (NAD); PFAM: Lactate/malate dehydrogenase; SPTR: Malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent
YP_004281444.1	COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); KEGG: nam:NAMH_0635 NADH-ubiquinone oxidoreductase 23 kda subunit; SPTR: NADH dehydrogenase subunit I
YP_004281445.1	COGs: COG3261 Ni Fe-hydrogenase III large subunit; InterPro IPR001501: IPR001135; KEGG: nam:NAMH_0634 Ech hydrogenase, subunit; PFAM: NADH-quinone oxidoreductase, subunit D; Nickel-dependent hydrogenase, large subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: Ech Hydrogenase, Subunit; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase
YP_004281446.1	KEGG: nam:NAMH_0633  F420H2:quinone oxidoreductase, 39.7 kDa subunit; SPTR:  F420H2:quinone oxidoreductase, 39.7 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YP_004281447.1	COGs: COG3260 Ni Fe-hydrogenase III small subunit; InterPro IPR006137; KEGG: nam:NAMH_0632 hydrogenase-4 component I; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: Hydrogenase-4 component I; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit
YP_004281448.1	COGs: COG0650 Formate hydrogenlyase subunit 4; InterPro IPR001694; KEGG: nam:NAMH_0631 EchB; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; SPTR: EchB; PFAM: NADH dehydrogenase
YP_004281449.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516: IPR001750; KEGG: nam:NAMH_0630 hydrogenase, EchA subunit; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: Hydrogenase, EchA subunit; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains
YP_004281450.1	COGs: COG3259 Coenzyme F420-reducing hydrogenase alpha subunit; InterPro IPR001501; KEGG: kcr:Kcr_0321 coenzyme F420-reducing hydrogenase, alpha subunit; PFAM: Nickel-dependent hydrogenase, large subunit; PRIAM: Hydrogen dehydrogenase; SPTR: Coenzyme F420-reducing hydrogenase, alpha subunit; PFAM: Nickel-dependent hydrogenase
YP_004281451.1	COGs: COG1941 Coenzyme F420-reducing hydrogenase gamma subunit; InterPro IPR006137; KEGG: pfu:PF0893 sulfhydrogenase delta subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; SPTR: Hydrogenase (Delta subunit); PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit
YP_004281452.1	COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR008333: IPR001433: IPR019480; KEGG: ele:Elen_1254 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain
YP_004281453.1	KEGG: tko:TK2072 cytosolic NiFe-hydrogenase, beta subunit; SPTR: Cytosolic NiFe-hydrogenase, beta subunit
YP_004281454.1	COGs: COG0669 phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR004821: IPR001980: IPR004820; KEGG: adg:Adeg_0115 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_004281455.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281456.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281457.1	COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); InterPro IPR008275: IPR002731; KEGG: ant:Arnit_0984 CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; PRIAM: Benzoyl-CoA reductase; SPTR: CoA-substrate-specific enzyme activase; TIGRFAM: CoA enzyme activase; PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase
YP_004281458.1	KEGG: dps:DP0122 17 kDa surface antigen; SPTR: Related to 17 kDa surface antigen
YP_004281459.1	COGs: COG2088 Uncharacterized protein involved in the regulation of septum location; InterPro IPR007170; KEGG: saf:SULAZ_0889  septation protein spoVG; PFAM: Sporulation stage V, protein G; SPTR:  septation protein spoVG; PFAM: SpoVG
YP_004281460.1	InterPro IPR008203; KEGG: afu:AF1874 hypothetical protein; PFAM: Uncharacterised protein family UPF0165; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF104
YP_004281461.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR010095: IPR001959; KEGG: mev:Metev_2371 IS605 OrfB family transposase; PFAM: transposase, probable, IS891/IS1136/IS1341; transposase, IS605 OrfB, C-terminal; SPTR: transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM: Helix-turn-helix domain; transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004281462.1	KEGG: llo:LLO_2911 transposase; SPTR: transposase; PFAM: transposase
YP_004281463.1	KEGG: sul:SYO3AOP1_1753 transposase IS116/IS110/IS902 family protein; SPTR:  uncharacterized protein
YP_004281464.1	KEGG: pmx:PERMA_0335 hypothetical protein; SPTR:  uncharacterized protein
YP_004281465.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR019877: IPR004839; KEGG: pmx:PERMA_0766 succinyldiaminopimelate transaminase; PFAM: Aminotransferase, class I/II; PRIAM: LL-diaminopimelate aminotransferase; SPTR: succinyldiaminopimelate transaminase; TIGRFAM: succinyldiaminopimelate transaminase; PFAM: Aminotransferase class I and II; TIGRFAM: succinyldiaminopimelate transaminase
YP_004281466.1	COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: tye:THEYE_A0958 TolR protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: TolR protein; PFAM: Biopolymer transport protein ExbD/TolR
YP_004281467.1	COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: hor:Hore_01950 conserved hypothetical nucleotide-binding protein TIGR00150; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: Conserved hypothetical nucleotide-binding protein TIGR00150; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family
YP_004281468.1	COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR000941: IPR020811: IPR020810; KEGG: tmt:Tmath_1558 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_004281469.1	KEGG: dds:Ddes_2150 split soret cytochrome c precursor; SPTR:  uncharacterized protein
YP_004281470.1	COGs: COG3366 conserved hypothetical protein; KEGG: mfe:Mefer_0414 hypothetical protein; SPTR:  uncharacterized protein
YP_004281471.1	KEGG: shl:Shal_2703 SMC domain-containing protein; SPTR:  uncharacterized protein
YP_004281472.1	COGs: COG1989 type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627: IPR000045; KEGG: gur:Gura_1800 peptidase A24A domain-containing protein; PFAM: peptidase A24A, N-terminal; peptidase A24A, prepilin type IV; PRIAM: Prepilin peptidase; SPTR: peptidase A24A domain protein; PFAM: Bacterial peptidase A24 N-terminal domain; type IV leader peptidase family
YP_004281473.1	KEGG: tmt:Tmath_1895 hypothetical protein; SPTR:  uncharacterized protein
YP_004281474.1	COGs: COG1214 Inactive homolog of metal-dependent protease  molecular chaperone; InterPro IPR000905; KEGG: fma:FMG_1218  O-sialoglycoprotein endopeptidase; PFAM: peptidase M22, glycoprotease; SPTR: Universal bacterial protein YeaZ; TIGRFAM: universal protein YeaZ; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ
YP_004281475.1	COGs: COG0456 Acetyltransferase; InterPro IPR006464: IPR000182; KEGG: cdf:CD0151  ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Possible ribosomal-protein-alanine N-acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: Acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase
YP_004281476.1	InterPro IPR007420; KEGG: tye:THEYE_A0863 hypothetical protein; PFAM: Protein of unknown function DUF465; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF465)
YP_004281477.1	COGs: COG0129 dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: dihydroxy-acid dehydratase; InterPro IPR004404: IPR000581; KEGG: tye:THEYE_A0862 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: dihydroxy-acid dehydratase; SPTR: dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase
YP_004281478.1	COGs: COG4992 ornithine/acetylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; InterPro IPR004636: IPR005814; KEGG: saf:SULAZ_0682 acetylornithine aminotransferase (acoat); PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Acetylornithine and succinylornithine aminotransferase; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases
YP_004281479.1	KEGG: mmo:MMOB1570 oligopeptide ABC transporter ATP-binding protein; SPTR: Oligopeptide ABC transporter ATP-binding protein
YP_004281480.1	COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003593: IPR010066: IPR003439: IPR013563; KEGG: ele:Elen_1221 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR:  uncharacterized protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_004281481.1	COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: Excinuclease ABC, C subunit; InterPro IPR000305: IPR004791: IPR001943: IPR001162; KEGG: sul:SYO3AOP1_0087 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit
YP_004281482.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: abu:Abu_2060 hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR:  uncharacterized protein; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_004281483.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281484.1	COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: adg:Adeg_0116 methyltransferase; PFAM: Conserved hypothetical protein CHP00095; SPTR: methyltransferase; TIGRFAM: Conserved hypothetical protein CHP00095; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family
YP_004281485.1	COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: hth:HTH_0232 outer membrane lipoprotein carrier protein; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR:  uncharacterized protein; PFAM: Outer membrane lipoprotein carrier protein LolA; TIGRFAM: periplasmic chaperone LolA
YP_004281486.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: pfl:PFL_0993 MotA/TolQ/ExbB proton channel family protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel family protein; PFAM: MotA/TolQ/ExbB proton channel family
YP_004281487.1	COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: hse:Hsero_0293 biopolymer transport ExbD/TolR protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport ExbD/TolR protein; PFAM: Biopolymer transport protein ExbD/TolR
YP_004281488.1	InterPro IPR006260; KEGG: sul:SYO3AOP1_0737 TonB family protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004281489.1	COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: ribosomal RNA adenine dimethylase; InterPro IPR020598: IPR011530: IPR001737; KEGG: saf:SULAZ_1177 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase, N-terminal; SPTR: ribosomal RNA small subunit methyltransferase A; TIGRFAM: ribosomal RNA adenine dimethylase; PFAM: ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_004281490.1	COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); KEGG: tal:Thal_1385 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Thermophilic metalloprotease (M29)
YP_004281491.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: sul:SYO3AOP1_1457 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase
YP_004281492.1	COGs: COG0225 peptide methionine sulfoxide reductase; HAMAP: peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; PFAM: peptide methionine sulphoxide reductase MsrA; PRIAM: peptide-methionine (S)-S-oxide reductase; SPTR: peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulphoxide reductase MsrA; PFAM: peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase
YP_004281493.1	COGs: COG1893 Ketopantoate reductase; InterPro IPR003710: IPR013332: IPR013752; KEGG: htu:Htur_0713 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; PRIAM: 2-dehydropantoate 2-reductase; SPTR: 2-dehydropantoate 2-reductase; TIGRFAM: Ketopantoate reductase ApbA/PanE; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_004281494.1	SPTR:  uncharacterized protein
YP_004281495.1	COGs: COG1193 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 2; InterPro IPR007696: IPR000432: IPR002625: IPR005747; KEGG: pmx:PERMA_1550 MutS2 protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; SPTR: MutS2 protein; TIGRFAM: DNA mismatch repair protein MutS, type 2; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein
YP_004281496.1	COGs: COG1610 conserved hypothetical protein; InterPro IPR019004; KEGG: tma:TM0690 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Yqey-like protein
YP_004281497.1	HAMAP: ribosomal protein S21; InterPro IPR001911; KEGG: pmx:PERMA_0135 30S ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; TIGRFAM: ribosomal protein S21
YP_004281498.1	KEGG: saf:SULAZ_1706  transposase; SPTR:  transposase; manually curated; PFAM: Integrase core domain
YP_004281499.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281500.1	COGs: COG0260 Leucyl aminopeptidase; HAMAP: cytosol aminopeptidase; InterPro IPR008283: IPR000819; KEGG: pmx:PERMA_1904 leucyl aminopeptidase; PFAM: peptidase M17, leucyl aminopeptidase, C-terminal; peptidase M17, leucyl aminopeptidase, N-terminal; SPTR: Leucine aminopeptidase; PFAM: Cytosol aminopeptidase family, catalytic domain; Cytosol aminopeptidase family, N-terminal domain
YP_004281501.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR010095: IPR001959; KEGG: mbu:Mbur_2016 transposase; PFAM: transposase, IS605 OrfB, C-terminal; transposase, probable, IS891/IS1136/IS1341; SPTR: transposase; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM:  transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, , N-terminal domain
YP_004281502.1	KEGG: hya:HY04AAS1_1066 thiol:disulfide interchange protein; SPTR: Thiol:disulfide interchange protein
YP_004281503.1	COGs: COG1812 S-adenosylmethionine synthetase; InterPro IPR002795; KEGG: aae:aq_1226 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase (MAT), archaea; PRIAM: methionine adenosyltransferase; SPTR: Probable S-adenosylmethionine synthase; PFAM: S-adenosylmethionine synthetase (AdoMet synthetase)
YP_004281504.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR011910: IPR002201; KEGG: sul:SYO3AOP1_0389 glycosyl transferase family 9; PFAM: Glycosyl transferase, family 9; SPTR: ADP-heptose:LPS heptosyltransferase; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II
YP_004281505.1	COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; InterPro IPR002942: IPR002307: IPR002305; KEGG: pmx:PERMA_0176 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; SMART: RNA-binding S4; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_004281506.1	COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182; KEGG: aae:aq_1359 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR:  uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_004281507.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: pmx:PERMA_1737 lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family
YP_004281508.1	COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase, class II; InterPro IPR002313: IPR004365: IPR004364; KEGG: pmx:PERMA_1426 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial
YP_004281509.1	COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: aae:aq_355 hypothetical protein; PFAM: Protein of unknown function DUF140; SPTR:  uncharacterized protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein
YP_004281510.1	COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593: IPR003439; KEGG: pmx:PERMA_0256 ABC transporter; PFAM: ABC transporter-like; PRIAM: sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter
YP_004281511.1	COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: hth:HTH_1768 ABC-type transport system; PFAM: Mammalian cell entry related; SPTR: ABC-type transport system; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein
YP_004281512.1	COGs: COG0118 Glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR010139: IPR000991; KEGG: saf:SULAZ_0383 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_004281513.1	COGs: COG2165 type II secretory pathway pseudopilin PulG; InterPro IPR012902: IPR010054: IPR013545; KEGG: aae:aq_418 general secretion pathway protein G; PFAM: type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; SPTR: General secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain
YP_004281514.1	COGs: COG0566 rRNA methylase; InterPro IPR004441: IPR013123: IPR001537; KEGG: saf:SULAZ_0212 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: SpoU rRNA methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3
YP_004281515.1	KEGG: nfi:NFIA_093000 polyketide synthetase PksP; SPTR: Conidial pigment polyketide synthase PksP/Alb1
YP_004281516.1	COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterPro IPR003661: IPR003594: IPR013656; KEGG: ppd:Ppro_3078 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold
YP_004281517.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197; KEGG: gsu:GSU1003 nitrogen regulation protein NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Nitrogen regulation protein NR(I); PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: nitrogen regulation protein NR(I)
YP_004281518.1	KEGG: fpl:Ferp_0893 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; SPTR: Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S binding domain
YP_004281519.1	KEGG: ava:Ava_0445 4Fe-4S ferredoxin, iron-sulfur binding; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding
YP_004281520.1	COGs: COG0426 flavoprotein; KEGG: tte:TTE1000  flavoproteins; SPTR: Uncharacterized flavoproteins; PFAM: Metallo-beta-lactamase superfamily
YP_004281521.1	InterPro IPR003448; KEGG: tye:THEYE_A0839 molybdopterin converting factor, subunit 2; PFAM: Molybdopterin biosynthesis MoaE; SPTR: Molybdopterin converting factor, subunit 2; PFAM: MoaE protein
YP_004281522.1	COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: aae:aq_1419 molybdopterin-guanine dinucleotide biosynthesis protein MobA; SPTR: Probable molybdopterin-guanine dinucleotide biosynthesis protein A; manually curated
YP_004281523.1	COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820: IPR020817: IPR001453; KEGG: saf:SULAZ_0716 molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor biosynthesis protein B; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; Molybdopterin binding; SPTR: Molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor biosynthesis protein B; TIGRFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; Molybdenum cofactor synthesis; PFAM: MoaC family; Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC; molybdenum cofactor synthesis domain
YP_004281524.1	COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR006638: IPR013483: IPR007197: IPR010505; KEGG: tye:THEYE_A2096 molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM; Molybdenum cofactor synthesis C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial
YP_004281525.1	COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR020817: IPR005110: IPR001453: IPR005111; KEGG: aae:aq_030 molybdenum cofactor biosynthesis protein A; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain
YP_004281526.1	COGs: COG1526 Uncharacterized protein required for formate dehydrogenase activity; InterPro IPR003786; KEGG: dps:DP1777 formate dehydrogenase accessory protein; PFAM: Formate dehydrogenase, subunit FdhD; SPTR: Related to formate dehydrogenase accessory protein; TIGRFAM: Formate dehydrogenase, subunit FdhD; PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase family accessory protein FdhD
YP_004281527.1	COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; InterPro IPR004435; KEGG: dps:DP1766 molybdopterin-guanine dinucleotide biosynthesis protein B; SPTR: Related to molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB), conserved domain; PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB
YP_004281528.1	COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: mac:MA0282 sulfate/molybdate ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Molybdate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: sulfate/molybdate ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004281529.1	COGs: COG0555 ABC-type sulfate transport system permease component; InterPro IPR000515; KEGG: pmo:Pmob_0378 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004281530.1	COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR006059; KEGG: mif:Metin_1375 extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Extracellular solute-binding protein family 1; TIGRFAM: tungstate ABC transporter binding protein WtpA; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: tungstate ABC transporter binding protein WtpA
YP_004281531.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281532.1	COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: kcr:Kcr_0465 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; SPTR: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor
YP_004281533.1	COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterPro IPR010047: IPR004137; KEGG: fpl:Ferp_2369 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; PRIAM: Carbon-monoxide dehydrogenase (acceptor); SPTR: Carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: Carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit
YP_004281534.1	KEGG: cpf:CPF_0219 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Nitrous oxide-stimulated promoter
YP_004281535.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: sfu:Sfum_3445 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004281536.1	COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10, subgroup; InterPro IPR001476: IPR020818; KEGG: saf:SULAZ_1700 chaperonin GroS; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit
YP_004281537.1	COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: Chaperonin Cpn60; InterPro IPR001844: IPR002423; KEGG: tal:Thal_1445 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_004281538.1	COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: ddf:DEFDS_0485 glycine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: serine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase
YP_004281539.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942: IPR000748: IPR006145; KEGG: adg:Adeg_1292 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_004281540.1	InterPro IPR010095; KEGG: aae:aq_1459 neutral protease; PFAM: transposase, IS605 OrfB, C-terminal; SPTR: Neutral protease; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM: Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004281541.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR010095: IPR001959; KEGG: mbu:Mbur_2016 transposase; PFAM: transposase, IS605 OrfB, C-terminal; transposase, probable, IS891/IS1136/IS1341; SPTR: transposase; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM:  transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, , N-terminal domain
YP_004281542.1	COGs: COG0274 deoxyribose-phosphate aldolase; HAMAP: deoxyribose-phosphate aldolase; InterPro IPR011343: IPR002915; KEGG: sul:SYO3AOP1_1434 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: deoxyribose-phosphate aldolase; SPTR: deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase
YP_004281543.1	COGs: COG0196 FAD synthase; InterPro IPR004821: IPR002606: IPR015864: IPR015865; KEGG: kol:Kole_2101 riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase; FAD synthetase; SPTR: riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin kinase/FAD synthetase; Cytidyltransferase-related; PFAM: riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; cytidyltransferase-related domain
YP_004281544.1	COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR005225: IPR005662: IPR002917: IPR004044; KEGG: saf:SULAZ_1518 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_004281545.1	KEGG: ssp:SSP0741 hypothetical protein; SPTR:  uncharacterized protein
YP_004281546.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942: IPR000748: IPR006145; KEGG: sul:SYO3AOP1_1696 RNA-binding S4 domain protein; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_004281547.1	COGs: COG1387 histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR003141: IPR004013; KEGG: tye:THEYE_A0609 PHP domain protein; PFAM: PHP, C-terminal; SMART: polymerase/histidinol phosphatase, N-terminal; SPTR: PHP domain protein; PFAM: PHP domain
YP_004281548.1	InterPro IPR012902; KEGG: pca:Pcar_2144 pilus-related protein, SPTR: Pilus-related protein, ; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004281549.1	COGs: COG4968 Tfp pilus assembly protein PilE; InterPro IPR012902; KEGG: gau:GAU_0011  pilin; SPTR: General secretion pathway protein H; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004281550.1	COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); InterPro IPR008275: IPR002731: IPR018709; KEGG: sus:Acid_0922  CoA-substrate-specific enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; ATPase, BadF/BadG/BcrA/BcrD type; SPTR:  CoA-substrate-specific enzyme activase; TIGRFAM: CoA enzyme activase; PFAM: BadF/BadG/BcrA/BcrD ATPase family; CoA enzyme activase uncharacterised domain (DUF2229); TIGRFAM: CoA-substrate-specific enzyme activase
YP_004281551.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281552.1	KEGG: pfa:PF11_0207 conserved Plasmodium protein; SPTR: Uncharacterized protein PF11_0207
YP_004281553.1	COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR004413: IPR006075: IPR018027; KEGG: aae:aq_461 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
YP_004281554.1	InterPro IPR006154: IPR006171; KEGG: aae:aq_2086 hypothetical protein; PFAM: Toprim domain; SMART: Toprim domain, subgroup; SPTR:  uncharacterized protein; PFAM: Toprim domain
YP_004281555.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281556.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR010095; KEGG: aae:aq_716 hypothetical protein; PFAM: transposase, IS605 OrfB, C-terminal; SPTR:  uncharacterized protein; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM:  transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004281557.1	COGs: COG0450 Peroxiredoxin; Contains Selenocysteine; InterPro IPR000866: IPR019479; KEGG: sdl:Sdel_2257 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; manually curated; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family
YP_004281558.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: sul:SYO3AOP1_0988 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_004281559.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR014284: IPR012760: IPR007127: IPR009042: IPR 007627: IPR007624: IPR007630; KEGG: aae:aq_1490 RNA polymerase sigma factor RpoD; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 factor, region 1.1; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain
YP_004281560.1	COGs: COG0358 DNA primase; InterPro IPR002694: IPR006154: IPR006295: IPR013264: IPR 006171; KEGG: pmx:PERMA_1674 DNA primase; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core
YP_004281561.1	COGs: COG0597 lipoprotein signal peptidase; HAMAP: peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: sul:SYO3AOP1_0195 lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; SPTR: lipoprotein signal peptidase; TIGRFAM: peptidase A8, signal peptidase II; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase
YP_004281562.1	COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); HAMAP: DNA ligase; InterPro IPR013840: IPR003583: IPR001357: IPR001679: IPR 013839: IPR004150: IPR004149: IPR000445; KEGG: aae:aq_633 DNA ligase (NAD dependent); PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; Helix-hairpin-helix motif; BRCT; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; SPTR: DNA ligase; TIGRFAM: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent
YP_004281563.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: tye:THEYE_A0119 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004281564.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR004638: IPR011701; KEGG: saf:SULAZ_1244 major facilitator family transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator family transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_004281565.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sul:SYO3AOP1_1379 secretion protein HlyD family protein; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD family protein; PFAM: HlyD family secretion protein
YP_004281566.1	InterPro IPR019734: IPR001440; KEGG: pmx:PERMA_0887 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide repeat
YP_004281567.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR010095: IPR001959; KEGG: mbu:Mbur_2016 transposase; PFAM: transposase, IS605 OrfB, C-terminal; transposase, probable, IS891/IS1136/IS1341; SPTR: transposase; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM:  transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, , N-terminal domain
YP_004281568.1	KEGG: pmx:PERMA_0886 hypothetical protein; SPTR:  uncharacterized protein
YP_004281569.1	COGs: COG4413 Urea transporter; InterPro IPR016047; KEGG: pmx:PERMA_0885  UreA transporter; PFAM: peptidase M23; SPTR:  urea transporter; PFAM: Urea transporter; peptidase family M23
YP_004281570.1	COGs: COG0019 diaminopimelate decarboxylase; InterPro IPR000183; KEGG: pmx:PERMA_0884 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: diaminopimelate decarboxylase; SPTR: diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase
YP_004281571.1	InterPro IPR003806; KEGG: pmx:PERMA_0883 hypothetical protein; PFAM: ATP-grasp fold, DUF201-type; SPTR:  uncharacterized protein; PFAM: ATP-grasp domain
YP_004281572.1	KEGG: pmx:PERMA_0882 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Coenzyme PQQ synthesis protein D (PqqD)
YP_004281573.1	KEGG: nam:NAMH_0395 hypothetical protein; SPTR:  uncharacterized protein
YP_004281574.1	COGs: COG4902 conserved hypothetical protein; InterPro IPR019243; KEGG: nam:NAMH_0394 hypothetical protein; PFAM: Protein of unknown function DUF2202; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein domain (DUF2202)
YP_004281575.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: adg:Adeg_0531 sensory histidine kinase AtoS; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Multi-sensor signal transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004281576.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197; KEGG: ddf:DEFDS_0834 two-component, sigma54 specific, transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Two-component, sigma54 specific, transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004281577.1	COGs: COG3494 conserved hypothetical protein; InterPro IPR010415; KEGG: pmx:PERMA_0354 hypothetical protein; PFAM: Protein of unknown function DUF1009; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1009)
YP_004281578.1	COGs: COG0781 transcription termination factor; HAMAP: N utilization substance protein B-like protein; InterPro IPR011605: IPR006027; KEGG: nis:NIS_1360 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein B homolog; TIGRFAM: NusB antitermination factor; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_004281579.1	COGs: COG0054 riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: saf:SULAZ_0150 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_004281580.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR017569: IPR004136; KEGG: tpd:Teth39_1289 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: 2-nitropropane dioxygenase, NPD; TIGRFAM: Enoyl-ACP reductase II, PFAM: 2-nitropropane dioxygenase; TIGRFAM:  enoyl-ACP reductase II
YP_004281581.1	COGs: COG0332 3-oxoacyl-ACP; HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655: IPR013751: IPR013747; KEGG: csc:Csac_1603 3-oxoacyl-ACP synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-ACP synthase 3; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-ACP synthase III
YP_004281582.1	COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: phospholipid biosynthesis protein, PlsX like; InterPro IPR012281: IPR003664; KEGG: hth:HTH_0802 fatty acid/phospholipid synthesis protein; PFAM: Fatty acid synthesis plsX protein; SPTR: phosphate acyltransferase; TIGRFAM: phospholipid biosynthesis protein, PlsX like; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX
YP_004281583.1	COGs: COG0333 ribosomal protein L32; HAMAP: ribosomal protein L32p; InterPro IPR002677; KEGG: rxy:Rxyl_1376 50S ribosomal protein L32; PFAM: ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32p; PFAM: ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_004281584.1	COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: hth:HTH_0321 hypothetical protein; PFAM: Protein of unknown function DUF177; SPTR:  uncharacterized protein; PFAM: Uncharacterized ACR, COG1399
YP_004281585.1	KEGG: gsu:GSU0016 peptidyl-prolyl cis-trans isomerase domain-containing protein; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase
YP_004281586.1	InterPro IPR015391: IPR000297; KEGG: pmx:PERMA_1395 SurA N-domain family; PFAM: SurA N-terminal; peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR:  uncharacterized protein; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain
YP_004281587.1	KEGG: clj:CLJU_c37620 hypothetical protein; SPTR:  uncharacterized protein; PFAM: methylene-tetrahydrofolate reductase C terminal
YP_004281588.1	COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; KEGG: mba:Mbar_A2312 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; SPTR: methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_004281589.1	COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP:Di-trans-poly-cis-decaprenylcistransferase-li ke; InterPro IPR001441; KEGG: pmx:PERMA_0376 di-trans, poly-cis-decaprenylcistransferase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Di-trans, poly-cis-decaprenylcistransferase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; PFAM:  undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_004281590.1	COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: soz:Spy49_1621c phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family
YP_004281591.1	COGs: COG0309 Hydrogenase maturation factor; InterPro IPR011854: IPR000728: IPR010918; KEGG: aca:ACP_3058 hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; SPTR: Hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE
YP_004281592.1	COGs: COG0390 ABC-type uncharacterized transport system permease component; InterPro IPR005226; KEGG: mfs:MFS40622_1190 hypothetical protein; PFAM: Conserved hypothetical protein CHP00245; SPTR:  uncharacterized protein; PFAM: Uncharacterised protein family (UPF0014); TIGRFAM: conserved hypothetical protein TIGR00245
YP_004281593.1	COGs: COG0409 Hydrogenase maturation factor; InterPro IPR002780; KEGG: pfu:PF0549 hydrogenase expression/formation protein; PFAM: Hydrogenase formation HypD protein; SPTR: Hydrogenase expression/formation protein; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD
YP_004281594.1	KEGG: nis:NIS_1167 hypothetical protein; SPTR:  uncharacterized protein; PFAM: HDOD domain
YP_004281595.1	COGs: COG0063 sugar kinase; InterPro IPR004443: IPR000631; KEGG: tjr:TherJR_0655 carbohydrate kinase, YjeF related protein; PFAM: hypothetical protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related; SPTR: Carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; hypothetical protein, N-terminal; PFAM: hypothetical protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF N-terminal region; yjeF C-terminal region, hydroxyethylthiazole kinase-related
YP_004281596.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003660: IPR003661: IPR003594: IPR000014; KEGG: pmx:PERMA_1042  nitrogen regulation protein NtrY; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR:  nitrogen regulation protein NtrY; TIGRFAM: PAS; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box
YP_004281597.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: mfs:MFS40622_0174 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase
YP_004281598.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: hor:Hore_18330 ABC transporter; PFAM: ABC-3; SPTR: ABC transporter; PFAM: ABC 3 transport family
YP_004281599.1	COGs: COG0704 phosphate uptake regulator; InterPro IPR008170; KEGG: hya:HY04AAS1_0012 phosphate uptake regulator, PhoU; PFAM: PhoU; SPTR: phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU
YP_004281600.1	KEGG: apo:Arcpr_1643 H+transporting two-sector ATPase E subunit; SPTR: V-type proton ATPase subunit E
YP_004281601.1	COGs: COG0240 Glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; InterPro IPR011128: IPR006109; KEGG: pmx:PERMA_1482 glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependentdihydroxyacetone-phosphate reductase); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_004281602.1	KEGG: nam:NAMH_1795 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3343)
YP_004281603.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527: IPR020058; KEGG: pmx:PERMA_1911 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_004281604.1	COGs: COG1217 membrane GTPase involved in stress response; InterPro IPR005225: IPR006298: IPR000795: IPR004161: IPR 000640; KEGG: nam:NAMH_1442 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_004281605.1	COGs: COG1420 transcriptional regulator of heat shock gene; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; InterPro IPR002571: IPR021153; KEGG: sfu:Sfum_1034 heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal; SPTR: Heat-inducible transcription repressor hrcA; TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; PFAM: HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA
YP_004281606.1	COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: dap:Dacet_1433 hypothetical protein; SPTR:  uncharacterized protein
YP_004281607.1	KEGG: mca:MCA0426 cytochrome c family protein; SPTR: Cytochrome c family protein
YP_004281608.1	KEGG: afw:Anae109_1872 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Cytochrome c bacterial
YP_004281609.1	COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: sul:SYO3AOP1_1507 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase
YP_004281610.1	COGs: COG0462 phosphoribosylpyrophosphate synthetase; InterPro IPR005946: IPR000836; KEGG: chy:CHY_0193 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: ribose-phosphate diphosphokinase; SPTR: ribose-phosphate pyrophosphokinase; TIGRFAM: phosphoribosyl pyrophosphokinase; PFAM: phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_004281611.1	InterPro IPR012902; KEGG: ddf:DEFDS_1314 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004281612.1	InterPro IPR012902; KEGG: xca:xccb100_0777 type II secretion system protein I; SPTR: type II secretion system protein I; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004281613.1	COGs: COG0854 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; InterPro IPR004569; KEGG: aae:aq_1423 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxal phosphate biosynthetic protein; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase
YP_004281614.1	COGs: COG0736 phosphopantetheinyl transferase (holo-ACP synthase); HAMAP: Holo-ACP synthase; InterPro IPR004568: IPR008278; KEGG: tye:THEYE_A0540 holo-ACP synthase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Holo-ACP synthase; TIGRFAM: phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-ACP synthase
YP_004281615.1	COGs: COG0015 Adenylosuccinate lyase; InterPro IPR004769: IPR000362: IPR019468; KEGG: gur:Gura_2064 adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase
YP_004281616.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197; KEGG: ton:TON_0415 pyruvate fromate-lyase activating enzyme-related protein; PFAM: Radical SAM; SPTR: Pyruvate fromate-lyase activating enzyme-related protein; PFAM: Radical SAM superfamily
YP_004281617.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR013099: IPR003148: IPR006037; KEGG: gbm:Gbem_3794 TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Ion transport 2; Regulator of K+ conductance, C-terminal; SPTR: TrkA-N domain protein; PFAM: TrkA-N domain; Ion channel; TrkA-C domain
YP_004281618.1	InterPro IPR008822; KEGG: pmx:PERMA_0652 crossover junction endodeoxyribonuclease RusA (Holliday junction nuclease RusA) (Holliday junction resolvase); PFAM: Endodeoxyribonuclease, RusA-like; SPTR: Crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase); PFAM: Endodeoxyribonuclease RusA
YP_004281619.1	COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR002938: IPR001327; KEGG: clj:CLJU_c40450  FAD dependent dehydrogenase; PFAM: Monooxygenase, FAD-binding; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; SPTR: Predicted FAD dependent dehydrogenase; PFAM: FAD binding domain
YP_004281620.1	COGs: COG4399 conserved hypothetical protein; InterPro IPR007383; KEGG: lwe:lwe2241 hypothetical protein; PFAM: Protein of unknown function DUF445, transmembrane; SPTR: UPF0754 membrane protein lwe2241; PFAM: Protein of unknown function (DUF445)
YP_004281621.1	COGs: COG1514 2'-5' RNA ligase; InterPro IPR014051: IPR004175; KEGG: tal:Thal_0250 2'-5' RNA ligase; PFAM: phosphoesterase, HXTX; SPTR: 2'-5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase
YP_004281622.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281623.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281624.1	COGs: COG0174 Glutamine synthetase; InterPro IPR008147: IPR008146: IPR004809; KEGG: ddf:DEFDS_1474 glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp; PRIAM: Glutamate--ammonia ligase; SPTR: Glutamine synthetase; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I
YP_004281625.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: pmx:PERMA_1585 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_004281626.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: saf:SULAZ_0596 transcriptional regulator, Fur family; PFAM: Ferric-uptake regulator; SPTR: transcriptional regulator, Fur family protein; PFAM: Ferric uptake regulator family
YP_004281627.1	COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: gem:GM21_1136 Rh family protein/ammonium transporter; PFAM: Ammonium transporter; SPTR: Rh family protein/ammonium transporter; PFAM: Ammonium transporter Family; TIGRFAM: ammonium transporter
YP_004281628.1	KEGG: dma:DMR_38940 hypothetical protein; SPTR:  uncharacterized protein
YP_004281629.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845; KEGG: cpo:COPRO5265_0791 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: Nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: phosphorylase superfamily; TIGRFAM: inosine guanosine and xanthosine phosphorylase family
YP_004281630.1	COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667: IPR003156; KEGG: aae:aq_1630 hypothetical protein; PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1; SPTR:  uncharacterized protein; PFAM: DHH family; DHHA1 domain
YP_004281631.1	COGs: COG0858 ribosome-binding factor A; InterPro IPR000238; KEGG: sul:SYO3AOP1_0860 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A
YP_004281632.1	COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: gsu:GSU2060 PmbA protein, PFAM: peptidase U62, modulator of DNA gyrase; SPTR: PmbA protein, ; PFAM:  modulator of DNA gyrase
YP_004281633.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281634.1	COGs: COG0279 phosphoheptose isomerase; HAMAP: phosphoheptose isomerase; InterPro IPR020620: IPR004515; KEGG: pmx:PERMA_1830 phosphoheptose isomerase; SPTR: phosphoheptose isomerase; TIGRFAM: phosphoheptose isomerase, subgroup; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase
YP_004281635.1	COGs: COG1158 transcription termination factor; InterPro IPR011112: IPR011113: IPR000194: IPR011129: IPR 003593: IPR004665; KEGG: aae:aq_873 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; ATPase, AAA+ type, core; SPTR: transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho
YP_004281636.1	COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033: IPR019822; KEGG: ddf:DEFDS_2140 twin-arginine translocation system component TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent protein translocase (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_004281637.1	COGs: COG1826 Sec-independent protein secretion pathway components; HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR003369: IPR006312; KEGG: gem:GM21_3587 twin arginine translocase A; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation protein, TatA/E family subunit; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin arginine-targeting protein translocase TatB
YP_004281638.1	COGs: COG0159 tryptophan synthase subunit alpha; HAMAP: Tryptophan synthase, alpha chain; InterPro IPR002028; KEGG: pmx:PERMA_1327 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain; PRIAM: Tryptophan synthase; SPTR: tryptophan synthase subunit alpha; TIGRFAM: Tryptophan synthase, alpha chain; PFAM: tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit
YP_004281639.1	COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: abm:ABSDF0139  integral membrane protein (DedA); PFAM: SNARE associated Golgi protein; SPTR: DedA; PFAM: SNARE associated Golgi protein
YP_004281640.1	COGs: COG0254 ribosomal protein L31; HAMAP: 50S ribosomal protein L31; InterPro IPR002150; KEGG: tye:THEYE_A0367 ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_004281641.1	KEGG: dhd:Dhaf_0400 FAD-dependent thymidylate synthase; SPTR:  uncharacterized protein; PFAM: Thymidylate synthase complementing protein
YP_004281642.1	KEGG: iho:Igni_0364 hypothetical protein; SPTR:  uncharacterized protein
YP_004281643.1	COGs: COG0031 Cysteine synthase; InterPro IPR001926: IPR005856: IPR005859; KEGG: dtu:Dtur_0030 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Cysteine synthase; SPTR: Cysteine synthase; TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases
YP_004281644.1	COGs: COG2419 conserved hypothetical protein; InterPro IPR016009; KEGG: pfu:PF0678 hypothetical protein; PFAM: tRNA (guanine-N1-)-methyltransferase; SPTR:  uncharacterized protein; PFAM: tRNA (Guanine-1)-methyltransferase
YP_004281645.1	COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); HAMAP: Arginine biosynthesis protein ArgJ; InterPro IPR002813; KEGG: pmx:PERMA_1638 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; PFAM: Arginine biosynthesis protein ArgJ; PRIAM: Glutamate N-acetyltransferase; SPTR: Glutamate N-acetyltransferase/amino-acid acetyltransferase; TIGRFAM: Arginine biosynthesis protein ArgJ; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase
YP_004281646.1	COGs: COG1521  transcriptional regulator protein; HAMAP: type III pantothenate kinase; InterPro IPR004619; KEGG: tpt:Tpet_0044 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor; SPTR:  transcriptional activator; TIGRFAM: Bordetella pertussis Bvg accessory factor; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_004281647.1	COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR005126; KEGG: cco:CCC13826_1831 NapC/NirT cytochrome c family, N-region; PFAM: NapC/NirT cytochrome c, N-terminal; SPTR: NapC/NirT cytochrome c family protein; PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: cytochrome c nitrate reductase, small subunit
YP_004281648.1	COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: aar:Acear_0045 PSP1 domain protein; PFAM: PSP1, C-terminal; SPTR: PSP1 domain protein; PFAM: PSP1 C-terminal conserved region
YP_004281649.1	COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR007197; KEGG: aae:aq_1528 hypothetical protein; PFAM: Radical SAM; SPTR:  uncharacterized protein; manually curated; PFAM: Radical SAM superfamily
YP_004281650.1	COGs: COG0490  regulatory ligand-binding protein related to C-terminal domains of K+ channels; InterPro IPR006037; KEGG: saf:SULAZ_0946 TrkA-C; PFAM: Regulator of K+ conductance, C-terminal; SPTR: TrkA-C; PFAM: TrkA-C domain
YP_004281651.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: pmx:PERMA_1094 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family
YP_004281652.1	COGs: COG0125 Thymidylate kinase; HAMAP: Thymidylate kinase; InterPro IPR000062: IPR018094; KEGG: pmx:PERMA_0169 thymidylate kinase; PFAM: Thymidylate kinase-like; PRIAM: dTMP kinase; SPTR: Thymidylate kinase; TIGRFAM: Thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase
YP_004281653.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: amt:Amet_0084 DNA polymerase III, delta prime subunit; SPTR: DNA polymerase III, delta prime subunit; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004281654.1	KEGG: rci:RCIX2375  carbonic anhydrase; SPTR:  carbonic anhydrase; PFAM: Carbonic anhydrase
YP_004281655.1	COGs: COG0622 phosphoesterase; InterPro IPR004843: IPR000979; KEGG: trq:TRQ2_0718 phosphodiesterase; PFAM: Metallophosphoesterase; SPTR:  uncharacterized protein; TIGRFAM: phosphodiesterase MJ0936; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family
YP_004281656.1	COGs: COG0550 Topoisomerase IA; InterPro IPR006171: IPR013497: IPR013498: IPR006154: IPR 003601: IPR003602: IPR005733; KEGG: drm:Dred_1984 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial; DNA topoisomerase I, archaeal
YP_004281657.1	COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: pth:PTH_0851 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase; SPTR: Alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_004281658.1	COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; InterPro IPR004463; KEGG: mct:MCR_0431 UDP-3-O-acyl N-acetylglucosamine deacetylase LpxC; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; SPTR: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase
YP_004281659.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197: IPR006638; KEGG: pca:Pcar_2195 Fe-S oxidoreductase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Predicted Fe-S oxidoreductase; PFAM: Radical SAM superfamily
YP_004281660.1	COGs: COG0206 Cell division GTPase; InterPro IPR003008: IPR018316: IPR000158; KEGG: sat:SYN_00437 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_004281661.1	COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494: IPR020823; KEGG: tra:Trad_1610 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA
YP_004281662.1	KEGG: sli:Slin_4641 protein of unknown function DUF214; SPTR:  uncharacterized protein
YP_004281663.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; HAMAP: D-alanine--D-alanine ligase; InterPro IPR011127: IPR011095: IPR005905; KEGG: pmx:PERMA_0620 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B); PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_004281664.1	COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR000713: IPR013221: IPR004101: IPR005863; KEGG: aae:aq_821 UDP-MurNAc-pentapeptide sythetase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_004281665.1	COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR000713: IPR013221: IPR004101: IPR005761; KEGG: pmx:PERMA_1882 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(meso-diaminopimelate-adding enzyme) (meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR:  uncharacterized protein; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase
YP_004281666.1	KEGG: pmx:PERMA_0770 hypothetical protein; SPTR:  uncharacterized protein
YP_004281667.1	KEGG: ptm:GSPATT00021410001 hypothetical protein; SPTR:  uncharacterized protein
YP_004281668.1	COGs: COG1309 transcriptional regulator; InterPro IPR001647; KEGG: dal:Dalk_4052 transcriptional regulator, TetR family; PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004281669.1	COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814: IPR005815; KEGG: ddf:DEFDS_1299 adenosylmethionine--8-amino-7-oxononanoate transaminase; PFAM: Aminotransferase class-III; PRIAM: Adenosylmethionine--8-amino-7-oxononanoate transaminase; SPTR: Adenosylmethionine--8-amino-7-oxononanoate transaminase; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase
YP_004281670.1	COGs: COG0348 polyferredoxin; KEGG: dtu:Dtur_0472 iron-sulfur cluster-binding protein; SPTR: Iron-sulfur cluster-binding protein
YP_004281671.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR019591; KEGG: ddf:DEFDS_1268 ATP-binding protein, CobQ/CobB/MinD/ParA family; PFAM: ATPase-like, ParA/MinD; SPTR: ATP-binding protein, CobQ/CobB/MinD/ParA family; PFAM: ParA/MinD ATPase like; Anion-transporting ATPase
YP_004281672.1	COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760; KEGG: cja:CJA_1463 extragenic suppressor protein SuhB; PFAM: Inositol monophosphatase; SPTR: Extragenic suppressor protein SuhB; PFAM: Inositol monophosphatase family
YP_004281673.1	KEGG: kfl:Kfla_2902 DNA polymerase III, alpha subunit
YP_004281674.1	KEGG: iho:Igni_1321 hypothetical protein; SPTR:  uncharacterized protein
YP_004281675.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: aae:aq_319 transcriptional regulator (PhoB-like); PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: transcriptional regulator (PhoB-like); PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal
YP_004281676.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: taf:THA_135 alkaline phosphatase synthesis sensor protein PhoR; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Alkaline phosphatase synthesis sensor protein PhoR; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004281677.1	KEGG: tdn:Suden_1882 hypothetical protein; SPTR:  uncharacterized protein
YP_004281678.1	KEGG: sul:SYO3AOP1_0328 hypothetical protein; SPTR:  uncharacterized protein; PFAM: phosphate-starvation-inducible E
YP_004281679.1	COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR006059: IPR005673; KEGG: nis:NIS_0582 phosphate ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: phosphate ABC transporter, substrate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein
YP_004281680.1	COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR006059: IPR005673; KEGG: nis:NIS_0582 phosphate ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: phosphate ABC transporter, substrate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein
YP_004281681.1	COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); HAMAP: Bifunctional purine biosynthesis protein purH; InterPro IPR011607: IPR013982: IPR002695; KEGG: pmx:PERMA_1500 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; MGS-like; PRIAM: phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; SPTR: Bifunctional purine biosynthesis protein purH; TIGRFAM: AICARFT/IMPCHase bienzyme; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
YP_004281682.1	COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR001608: IPR011079: IPR000821; KEGG: aae:aq_1827 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; PRIAM: Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase
YP_004281683.1	COGs: COG2264 ribosomal protein L11 methylase; HAMAP: ribosomal protein L11 methyltransferase; InterPro IPR010456: IPR004498; KEGG: lba:Lebu_0693 ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: ribosomal protein L11 methyltransferase; PFAM: ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_004281684.1	COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR004013: IPR003141; KEGG: cob:COB47_1730 PHP domain protein; PFAM: PHP, C-terminal; SMART: polymerase/histidinol phosphatase, N-terminal; SPTR: PHP domain protein; PFAM: PHP domain
YP_004281685.1	COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110; KEGG: tva:TVAG_298290 ankyrin repeat protein; PFAM: Ankyrin repeat; SPTR: Ankyrin repeat protein, ; PFAM: Ankyrin repeat
YP_004281686.1	COGs: COG1197 transcription-repair coupling factor (superfamily II helicase); InterPro IPR003711: IPR011545: IPR001650: IPR005118: IPR 014001: IPR004576; KEGG: geo:Geob_3711 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; transcription factor CarD; DNA/RNA helicase, C-terminal; transcription-repair-coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd)
YP_004281687.1	KEGG: gme:Gmet_3436 hypothetical protein; SPTR:  uncharacterized protein
YP_004281688.1	COGs: COG0777 Acetyl-CoA carboxylase beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; InterPro IPR000022: IPR000438; KEGG: tye:THEYE_A0559 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_004281689.1	InterPro IPR001845; KEGG: tkm:TK90_2022 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004281690.1	COGs: COG0251  translation initiation inhibitor yjgF family; InterPro IPR006175: IPR006056; KEGG: hth:HTH_0173  translation initiation inhibitor; PFAM: Endoribonuclease L-PSP; SPTR:  translation initiation inhibitor; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP
YP_004281691.1	COGs: COG0313 methyltransferase; HAMAP: ribosomal RNA small subunit methyltransferase I; InterPro IPR000878: IPR008189; KEGG: pmx:PERMA_0782 hypothetical protein; PFAM: Tetrapyrrole methylase; SPTR:  uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0011; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family
YP_004281692.1	COGs: COG1586 S-adenosylmethionine decarboxylase; InterPro IPR003826; KEGG: pmx:PERMA_1687 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; SPTR: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase
YP_004281693.1	COGs: COG0359 ribosomal protein L9; HAMAP: ribosomal protein L9, bacteria/chloroplast; InterPro IPR020070: IPR020069: IPR020594; KEGG: tte:TTE2775 ribosomal protein L9; PFAM: ribosomal protein L9, C-terminal; ribosomal protein L9, N-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9, bacteria/chloroplast; PFAM: ribosomal protein L9, N-terminal domain; ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9
YP_004281694.1	KEGG: ddf:DEFDS_1990 hypothetical protein; SPTR:  uncharacterized protein
YP_004281695.1	COGs: COG0238 ribosomal protein S18; HAMAP: ribosomal protein S18; InterPro IPR001648; KEGG: tye:THEYE_A0795 ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_004281696.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424: IPR011344; KEGG: min:Minf_0754 single-stranded DNA-binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_004281697.1	COGs: COG0360 ribosomal protein S6; HAMAP: ribosomal protein S6, bacterial-like; InterPro IPR020814: IPR000529; KEGG: pmx:PERMA_1291 ribosomal protein S6; PFAM: ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_004281698.1	COGs: COG0193 peptidyl-tRNA hydrolase; HAMAP: peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: aae:aq_346 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_004281699.1	COGs: COG1825 ribosomal protein L25 (general stress protein Ctc); HAMAP: ribosomal protein L25; InterPro IPR020055: IPR001021; KEGG: sul:SYO3AOP1_1687 50S ribosomal protein L25/general stress protein Ctc; PFAM: ribosomal protein L25, N-terminal; SPTR: 50S ribosomal protein L25; TIGRFAM: ribosomal protein L25; PFAM: ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form
YP_004281700.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281701.1	COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterPro IPR007695: IPR007860: IPR007696: IPR007861: IPR 000432: IPR005748; KEGG: cob:COB47_1054 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS
YP_004281702.1	HAMAP: Uncharacterised protein family, zinc-binding; InterPro IPR005584; KEGG: pcr:Pcryo_1404 hypothetical protein; PFAM: Uncharacterised protein family, zinc-binding; SPTR: UPF0243 zinc-binding protein Pcryo_1404; PFAM: Domain of unknown function (DUF329)
YP_004281703.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942: IPR006145: IPR006225; KEGG: aae:aq_1758 hypothetical protein; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_004281704.1	COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR002616: IPR004803; KEGG: tte:TTE1183 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming
YP_004281705.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: pmx:PERMA_1898 transglycosylase SLT domain protein; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains); PFAM: transglycosylase SLT domain
YP_004281706.1	COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: toc:Toce_1139 chromosome segregation and condensation protein ScpA; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; SPTR: Chromosome segregation and condensation protein ScpA; PFAM: ScpA/B protein
YP_004281707.1	COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644; KEGG: pmx:PERMA_0044 cbs domain containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: Cbs domain containing protein; PFAM: CBS domain
YP_004281708.1	KEGG: gur:Gura_0288 hypothetical protein; SPTR:  uncharacterized protein
YP_004281709.1	COGs: COG0158 Fructose-1 6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; InterPro IPR000146; KEGG: saf:SULAZ_1502 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase class 1; PFAM: Fructose-1-6-bisphosphatase
YP_004281710.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: bcq:BCQ_3782 exopolyphosphatase, Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR:  uncharacterized protein; PFAM: Ppx/GppA phosphatase family
YP_004281711.1	COGs: COG0855 polyphosphate kinase; HAMAP: polyphosphate kinase; InterPro IPR003414; KEGG: nis:NIS_0328 polyphosphate kinase; PFAM: polyphosphate kinase; PRIAM: polyphosphate kinase; SPTR: polyphosphate kinase; TIGRFAM: polyphosphate kinase; PFAM: polyphosphate kinase; TIGRFAM: polyphosphate kinase 1
YP_004281712.1	COGs: COG2062 phosphohistidine phosphatase SixA; InterPro IPR013078: IPR004449; KEGG: dap:Dacet_2997  phosphohistidine phosphatase, SixA; PFAM: histidine phosphatase superfamily, clade-1; SPTR:  phosphohistidine phosphatase, SixA; TIGRFAM: phosphohistidine phosphatase SixA, subgroup; PFAM: phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA
YP_004281713.1	COGs: COG4711 membrane protein; KEGG: aae:aq_1481 hypothetical protein; SPTR:  uncharacterized protein; PFAM:  integral membrane protein (DUF2391)
YP_004281714.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198: IPR011284; KEGG: tal:Thal_0648 3-oxoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-ACP reductase; TIGRFAM: 3-oxoacyl-ACP reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-ACP reductase
YP_004281715.1	COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR006163: IPR003231; KEGG: hor:Hore_10300 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_004281716.1	COGs: COG1281 Disulfide bond chaperones of the HSP33 family; HAMAP: Heat shock protein Hsp33 protein; InterPro IPR000397; KEGG: aae:aq_2009 hypothetical protein; PFAM: Heat shock protein Hsp33 protein; SPTR: 33 kDa chaperonin; PFAM: Hsp33 protein
YP_004281717.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR001959: IPR010095; KEGG: mbu:Mbur_2016 transposase; PFAM: transposase, IS605 OrfB, C-terminal; transposase, probable, IS891/IS1136/IS1341; SPTR: transposase; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM:  transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, , N-terminal domain
YP_004281718.1	COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR013848: IPR007197: IPR006638: IPR005839: IPR 006467; KEGG: pmx:PERMA_1953 hypothetical protein; PFAM: methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR:  uncharacterized protein; TIGRFAM: MiaB-like tRNA modifying enzyme; methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family
YP_004281719.1	COGs: COG0003 ATPase involved in chromosome partitioning; KEGG: aco:Amico_1234 arsenite-activated ATPase ArsA; PRIAM: Arsenite-transporting ATPase; SPTR:  arsenical pump-driving ATPase; PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase (arsA)
YP_004281720.1	KEGG: aco:Amico_1235 hypothetical protein; SPTR:  uncharacterized protein
YP_004281721.1	COGs: COG1966 Carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: cpo:COPRO5265_1025 carbon starvation-induced protein; PFAM: Carbon starvation protein CstA; SPTR: Carbon starvation-induced protein; PFAM: Carbon starvation protein CstA
YP_004281722.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR001959: IPR010095; KEGG: sul:SYO3AOP1_0218 transposase IS605 OrfB; PFAM: transposase, IS605 OrfB, C-terminal; transposase, probable, IS891/IS1136/IS1341; SPTR: Probable transposase; PFAM:  transposase DNA-binding domain
YP_004281723.1	InterPro IPR009875; KEGG: pmx:PERMA_0239 type IV pilus assembly protein PilZ; PFAM: type IV pilus assembly PilZ; SPTR: type IV pilus assembly protein PilZ; PFAM: PilZ domain
YP_004281724.1	KEGG: sul:SYO3AOP1_1114 hypothetical protein; SPTR:  uncharacterized protein; PFAM: FlgN protein
YP_004281725.1	KEGG: cps:CPS_0837 hypothetical protein
YP_004281726.1	COGs: COG1256 Flagellar hook-associated protein; InterPro IPR010930: IPR002371; KEGG: pmx:PERMA_1614 flagellar hook-associated protein FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; SPTR: Flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK
YP_004281727.1	COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492: IPR013384; KEGG: pmx:PERMA_1615 flagellar hook-associated protein 3; PFAM: Flagellin, N-terminal; SPTR: Flagellar hook-associated protein 3; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3
YP_004281728.1	COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: mpi:Mpet_1014 magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_004281729.1	COGs: COG4739 Uncharacterized protein containing a ferredoxin domain; InterPro IPR019224; KEGG: tjr:TherJR_1864 protein of unknown function DUF2148; PFAM: Protein of unknown function DUF2148; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein containing a ferredoxin domain (DUF2148)
YP_004281730.1	KEGG: glo:Glov_2077 hypothetical protein; SPTR:  uncharacterized protein
YP_004281731.1	COGs: COG0046 phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; HAMAP: phosphoribosylformylglycinamidine synthase II; InterPro IPR000728: IPR010918: IPR010074; KEGG: dap:Dacet_1986 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: phosphoribosylformylglycinamidine synthase 2; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II
YP_004281732.1	COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); HAMAP: Trigger factor; InterPro IPR008881: IPR001179: IPR008880: IPR005215; KEGG: saf:SULAZ_0378 trigger factor; PFAM: Trigger factor, C-terminal, bacterial; Trigger factor, ribosome-binding, bacterial; peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Trigger factor; TIGRFAM: Trigger factor; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor
YP_004281733.1	COGs: COG0137 Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; InterPro IPR001518; KEGG: saf:SULAZ_0582 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase
YP_004281734.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: tRNA(Ile)-lysidine synthase; InterPro IPR011063: IPR012795: IPR012796; KEGG: tte:TTE2395 ATPase; PFAM: PP-loop; SPTR: tRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_004281735.1	COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836: IPR005904; KEGG: bcy:Bcer98_3479 hypoxanthine-guanine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: Hypoxanthine phosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_004281736.1	COGs: COG0465 ATP-dependent Zn protease; InterPro IPR003959: IPR000642: IPR003593: IPR005936; KEGG: dvl:Dvul_1787 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase, AAA-type, core; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: Cell division protein FtsH; TIGRFAM: peptidase M41, FtsH; PFAM: FtsH Extracellular; peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: 26S proteasome subunit P45 family; ATP-dependent metalloprotease FtsH
YP_004281737.1	COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR020602: IPR001474; KEGG: chy:CHY_0955 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I
YP_004281738.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440: IPR019734: IPR003107; KEGG: pmx:PERMA_0798 TPR domain containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; RNA-processing protein, HAT helix; SPTR:  uncharacterized protein; PFAM: Tetratricopeptide repeat; TIGRFAM: type IV pilus biogenesis/stability protein PilW
YP_004281739.1	KEGG: tet:TTHERM_00808110 hypothetical protein; SPTR:  uncharacterized protein
YP_004281740.1	KEGG: lbi:LEPBI_I0855 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2892)
YP_004281741.1	InterPro IPR001455: IPR019870; KEGG: ddf:DEFDS_0344 hypothetical protein; PFAM: SirA-like; SPTR:  uncharacterized protein; TIGRFAM: SirA-related, selenium metabolism; PFAM: SirA-like protein; DsrE/DsrF-like family; TIGRFAM: selenium metabolism protein YedF
YP_004281742.1	KEGG: pat:Patl_1666 peptidase M16-like
YP_004281743.1	KEGG: dat:HRM2_27180 hypothetical protein; SPTR:  uncharacterized protein
YP_004281744.1	COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR015413: IPR002300: IPR013155: IPR002302; KEGG: tye:THEYE_A1204 leucyl-tRNA synthetase; PFAM: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Aminoacyl-tRNA synthetase, class I (M); Aminoacyl-tRNA synthetase, class Ia; PRIAM: Valine--tRNA ligase., Leucine--tRNA ligase; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_004281745.1	COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749; KEGG: abi:Aboo_1311 phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; SPTR: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase
YP_004281746.1	KEGG: pmx:PERMA_2023 hypothetical protein; SPTR:  uncharacterized protein
YP_004281747.1	COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: ddf:DEFDS_0032 cobalt ABC transporter substrate-binding protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: Cobalt ABC transporter, substrate-binding protein; PFAM: Nickel uptake substrate-specific transmembrane region
YP_004281748.1	COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: aar:Acear_0777 cobalamin (vitamin B12) biosynthesis CbiM protein; PFAM: Cobalamin (vitamin B12) biosynthesis CbiM; SPTR: CbiM protein; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM
YP_004281749.1	KEGG: tye:THEYE_A1921 hypothetical protein; SPTR:  uncharacterized protein
YP_004281750.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339: IPR012809; KEGG: tye:THEYE_A1922 cobalt ABC transporter, permease CbiQ; PFAM: Cobalt transport protein; SPTR: Cobalt ABC transporter, permease CbiQ; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease CbiQ
YP_004281751.1	COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: ddf:DEFDS_0028 cobalt ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Cobalt ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004281752.1	COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: aae:aq_283 hypothetical protein; PFAM: Protein of unknown function DUF151; SPTR:  uncharacterized protein; PFAM: Uncharacterised ACR, COG1259
YP_004281753.1	COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterPro IPR013848: IPR007197: IPR002792: IPR006638: IPR 006463: IPR005839; KEGG: tal:Thal_1248 RNA modification enzyme, MiaB family; PFAM: methylthiotransferase, N-terminal; Radical SAM; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: RNA modification enzyme, MiaB family; TIGRFAM: methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family
YP_004281754.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dal:Dalk_5284 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein and related peptidoglycan-associated (Lipo)protein; PFAM: OmpA family
YP_004281755.1	COGs: COG0014 Gamma-glutamyl phosphate reductase; HAMAP: Glutamate-5-semialdehyde dehydrogenase; InterPro IPR015590: IPR012134: IPR000965; KEGG: pmx:PERMA_1682 gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: Gamma-glutamyl phosphate reductase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase
YP_004281756.1	COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: tye:THEYE_A0154 shikimate kinase; PFAM: Shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase
YP_004281757.1	InterPro IPR010095; KEGG: hth:HTH_1865 transposase; PFAM: transposase, IS605 OrfB, C-terminal; SPTR: transposase; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM: Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004281758.1	COGs: COG2452 site-specific integrase-resolvase; InterPro IPR000551: IPR006119; KEGG: afl:Aflv_2745 predicted site-specific integrase-resolvase; PFAM: Resolvase, N-terminal; HTH transcriptional regulator, MerR; SPTR: Predicted site-specific integrase-resolvase; PFAM: Resolvase, N terminal domain
YP_004281759.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; KEGG: rxy:Rxyl_0512 hypothetical protein; SPTR:  uncharacterized protein
YP_004281760.1	COGs: COG0467 RecA-superfamily ATPase implicated in signal transduction; InterPro IPR014774; KEGG: tal:Thal_0874  circadian clock protein, KaiC; PFAM: Circadian clock protein KaiC/DNA repair protein RadA; SPTR:  uncharacterized protein; TIGRFAM: KaiC domain protein, AF_0795 family; PFAM: KaiC; TIGRFAM: KaiC domain protein, AF_0795 family
YP_004281761.1	COGs: COG1109 phosphomannomutase; InterPro IPR005844: IPR005845: IPR005846: IPR005843; KEGG: tal:Thal_0381 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; PRIAM: phosphoglucosamine mutase; SPTR: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_004281762.1	COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: sul:SYO3AOP1_1020 protein of unknown function DUF218; PFAM: Protein of unknown function DUF218; SPTR:  uncharacterized protein; PFAM: DUF218 domain
YP_004281763.1	COGs: COG0502 Biotin synthase; HAMAP: Biotin synthase; InterPro IPR007197: IPR010722: IPR006638: IPR002684; KEGG: tal:Thal_0926 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthase; TIGRFAM: Biotin synthase; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase
YP_004281764.1	KEGG: ddf:DEFDS_0024 mutual gliding protein A; SPTR: Mutual gliding protein A; PFAM: Gtr1/RagA G protein conserved region; TIGRFAM: small GTP-binding protein domain
YP_004281765.1	InterPro IPR004942; KEGG: gur:Gura_4331 roadblock/LC7 family protein; PFAM: Dynein light chain-related; SPTR: Roadblock/LC7 family protein; PFAM: Roadblock/LC7 domain
YP_004281766.1	COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: dth:DICTH_1986 PorB subunit of pyruvate:flavodoxin oxidoreductase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate synthase; SPTR: PorB subunit of pyruvate:flavodoxin oxidoreductase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_004281767.1	COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: dtu:Dtur_0262 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; PRIAM: Pyruvate synthase; SPTR: Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: domain
YP_004281768.1	COGs: COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase delta subunit; InterPro IPR011898; KEGG: kol:Kole_0380 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; SPTR: Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate; PFAM: 4Fe-4S binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
YP_004281769.1	COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752: IPR011894; KEGG: tye:THEYE_A0907 pyruvate synthase subunit PorC; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: Pyruvate synthase; SPTR: Pyruvate synthase subunit PorC; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family
YP_004281770.1	COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: RecR protein; InterPro IPR015967: IPR006171: IPR006154: IPR000093; KEGG: pmx:PERMA_0532 recombination protein RecR; PFAM: Toprim domain; Zinc finger C4-type, RecR; SMART: Toprim domain, subgroup; SPTR: Recombination protein RecR; TIGRFAM: RecR protein; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_004281771.1	COGs: COG0718 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0133; InterPro IPR004401; KEGG: cno:NT01CX_0824 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein NT01CX_0824; TIGRFAM: Uncharacterised protein family UPF0133; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family
YP_004281772.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004281773.1	KEGG: ant:Arnit_0654 hypothetical protein; SPTR:  uncharacterized protein
YP_004281774.1	COGs: COG1620 L-lactate permease; KEGG: tye:THEYE_A1556 L-lactate permease, SPTR: L-lactate permease, ; PFAM: L-lactate permease
YP_004281775.1	COGs: COG4747 ACT domain-containing protein; InterPro IPR002912; KEGG: drt:Dret_1138 amino acid-binding ACT domain protein; PFAM: Amino acid-binding ACT; SPTR: Amino acid-binding ACT domain protein; PFAM: ACT domain
YP_004281776.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: wsu:WS0712 coenzyme F390 synthetase II; PFAM: AMP-dependent synthetase/ligase; PRIAM: phenylacetate--CoA ligase; SPTR: COENZYME F390 SYNTHETASE II; PFAM: AMP-binding enzyme
YP_004281777.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: tye:THEYE_A0024 phenylacetate-coenzyme A ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: phenylacetate--CoA ligase; SPTR: phenylacetate-coenzyme A ligase; PFAM: AMP-binding enzyme
YP_004281778.1	KEGG: pph:Ppha_0671 hypothetical protein; SPTR:  uncharacterized protein
YP_004281779.1	COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143: IPR003142: IPR004408; KEGG: sul:SYO3AOP1_0788 biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; PRIAM: Biotin--[acetyl-CoA-carboxylase] ligase; SPTR: BirA; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; manually curated; PFAM: Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region
YP_004281780.1	COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335: IPR005791; KEGG: pmx:PERMA_1555 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family
YP_004281781.1	COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR003335: IPR005665; KEGG: mgm:Mmc1_3211 protein translocase subunit SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: SecF protein; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF
YP_004281782.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: glo:Glov_2589 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family
YP_004281783.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: dat:HRM2_18100  permease; PFAM: Permease YjgP/YjgQ, predicted; SPTR:  permease; PFAM: Predicted permease YjgP/YjgQ family
YP_004281784.1	COGs: COG1515 deoxyinosine 3'endonuclease (endonuclease V); HAMAP: Endonuclease V; InterPro IPR007581; KEGG: sul:SYO3AOP1_0101 deoxyribonuclease V; PFAM: Endonuclease V; PRIAM: deoxyribonuclease V; SPTR: deoxyribonuclease V; PFAM: Endonuclease V
YP_004281785.1	COGs: COG0105 Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase, core; InterPro IPR001564; KEGG: sul:SYO3AOP1_0074 nucleoside-diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; PRIAM: Nucleoside-diphosphate kinase; SMART: Nucleoside diphosphate kinase, core; SPTR: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_004281786.1	KEGG: pkn:PKH_092040 dynein heavy chain; SPTR: Dynein heavy chain
YP_004281787.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: tte:TTE0260 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); PFAM: Fumarylacetoacetase, C-terminal-like; PRIAM: Ureidoglycolate lyase; SPTR: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway); PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family
YP_004281788.1	COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR005148: IPR015945: IPR008909: IPR001278; KEGG: sul:SYO3AOP1_0598 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; DALR anticodon binding; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase
YP_004281789.1	InterPro IPR007730; KEGG: pmx:PERMA_0798 TPR domain containing protein; PFAM: Sporulation related domain; SPTR: TPR Domain containing protein; PFAM: Sporulation related domain
YP_004281790.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR001130: IPR007197: IPR015991; KEGG: aae:aq_2060 hypothetical protein; PFAM: deoxyribonuclease, TatD-related; Radical SAM; SPTR:  uncharacterized protein; TIGRFAM: deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Radical SAM superfamily; TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_004281791.1	COGs: COG0864 transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; HAMAP: nickel-responsive regulator; InterPro IPR014864; KEGG: gsu:GSU2980 nickel responsive regulator; PFAM: transcription factor, NikR, nickel binding C-terminal; SPTR: Nickel responsive regulator NikR; PFAM: Ribbon-helix-helix protein, copG family; NikR C terminal nickel binding domain; TIGRFAM: nickel-responsive transcriptional regulator NikR
YP_004281792.1	COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: pmx:PERMA_0079 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein PERMA_0079; TIGRFAM: Protein of unknown function DUF28; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family
YP_004281793.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258: IPR018392; KEGG: pmx:PERMA_1513 glycoside hydrolase family 23; PFAM: Lytic transglycosylase-like, catalytic; peptidoglycan-binding lysin domain; SPTR: Glycoside hydrolase family 23; PFAM: transglycosylase SLT domain
YP_004281794.1	COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR000682; KEGG: sul:SYO3AOP1_0069 tRNA (adenine-N(1)-)-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: tRNA methyltransferase complex GCD14 subunit; PFAM: tRNA methyltransferase complex GCD14 subunit
YP_004281795.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: dap:Dacet_1102 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family
YP_004281796.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001460; KEGG: geo:Geob_0826 penicillin-binding protein transpeptidase; PFAM: Penicillin-binding protein, transpeptidase; SPTR: Penicillin-binding protein transpeptidase; PFAM: Penicillin binding protein transpeptidase domain
YP_004281797.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: saf:SULAZ_0967 histidine triad nucleotide-binding protein 1 (adenosine5'-monophosphoramidase); PFAM: histidine triad (HIT) protein; SPTR: histidine triad nucleotide-binding protein 1 (Adenosine5'-monophosphoramidase); PFAM: HIT domain
YP_004281798.1	COGs: COG0140 phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: phosphoribosyl-ATP pyrophosphohydrolase; InterPro IPR021130: IPR008179; KEGG: pmx:PERMA_0366 histidine biosynthesis bifunctional protein hisIE; PFAM: phosphoribosyl-ATP pyrophosphohydrolase-like; SPTR: histidine biosynthesis bifunctional protein hisIE; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase
YP_004281799.1	COGs: COG0139 phosphoribosyl-AMP cyclohydrolase; HAMAP: phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496; KEGG: dap:Dacet_0283 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; PRIAM: phosphoribosyl-AMP cyclohydrolase; SPTR:  uncharacterized protein; PFAM: phosphoribosyl-AMP cyclohydrolase
YP_004281800.1	COGs: COG0499 S-adenosylhomocysteine hydrolase; HAMAP: Adenosylhomocysteinase; InterPro IPR000043: IPR015878; KEGG: aae:aq_1180 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase
YP_004281801.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR020573: IPR001451: IPR007691; KEGG: tye:THEYE_A0092 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_004281802.1	InterPro IPR005632; KEGG: ppd:Ppro_3018 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like)
YP_004281803.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184: IPR016474; KEGG: aae:aq_1300 outer membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_004281804.1	COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: pmx:PERMA_1577 phosphate regulon sensor protein PhoR; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Sensor histidine kinase HpkA; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004281805.1	COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828: IPR020829: IPR006424; KEGG: tjr:TherJR_2711 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_004281806.1	InterPro IPR003825; KEGG: hac:Hac_0367 hypothetical protein; PFAM: Colicin V production protein; SPTR: CvpA family protein; PFAM: Colicin V production protein
YP_004281807.1	COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638: IPR004393; KEGG: saf:SULAZ_0272 nicotinate-nucleotide diphosphorylase (carboxylating); PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide diphosphorylase (Carboxylating); TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase
YP_004281808.1	COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: dak:DaAHT2_0799 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_004281809.1	COGs: COG4123 O-methyltransferase; InterPro IPR007848; KEGG: sul:SYO3AOP1_0212 methyltransferase small; PFAM: methyltransferase small; SPTR: methyltransferase small; PFAM: methyltransferase small domain
YP_004281810.1	KEGG: sat:SYN_02925 hypothetical protein; SPTR: Hypothetical membrane protein
YP_004281811.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: aae:aq_1969 aspartate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; PFAM: Aminotransferase class I and II
YP_004281812.1	COGs: COG1734 DnaK suppressor protein; InterPro IPR000962; KEGG: sul:SYO3AOP1_0603 transcriptional regulator, TraR/DksA family; SPTR: transcriptional regulator, TraR/DksA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA
YP_004281813.1	COGs: COG1586 S-adenosylmethionine decarboxylase; HAMAP: S-adenosylmethionine decarboxylase proenzyme; InterPro IPR003826: IPR017716; KEGG: aae:aq_254 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; SPTR: S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form
YP_004281814.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: saf:SULAZ_1398 methyltransferase domain family protein; PFAM: methyltransferase type 11; SPTR: methyltransferase domain family protein; PFAM: methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC
YP_004281815.1	COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: tte:TTE1400 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_004281816.1	InterPro IPR006157; KEGG: lci:LCK_00969 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; SPTR: dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain
YP_004281817.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: pmx:PERMA_0932 signal transduction response regulator; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Signal transduction response regulator; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004281818.1	COGs: COG1636 conserved hypothetical protein; InterPro IPR003828; KEGG: ddf:DEFDS_1431 hypothetical protein; PFAM: Protein of unknown function DUF208; SPTR: Hypothetical cytosolic protein; PFAM: Uncharacterized BCR, COG1636
YP_004281819.1	COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: saf:SULAZ_0546 16S rRNA methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; SPTR: 16S rRNA methyltransferase GidB; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB
YP_004281820.1	COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR002218: IPR004416; KEGG: afl:Aflv_2858 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A
YP_004281821.1	COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: pmx:PERMA_1166 DUF62-containing protein; PFAM: Protein of unknown function DUF62; SPTR: DUF62-containing protein; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase
YP_004281822.1	COGs: COG2121 conserved hypothetical protein; InterPro IPR007172: IPR002123; KEGG: pbr:PB2503_13144 hypothetical protein; PFAM: Protein of unknown function DUF374; phospholipid/glycerol acyltransferase; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF374)
YP_004281823.1	KEGG: cph:Cpha266_0858 Fis family transcriptional regulator; SPTR:  uncharacterized protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004281824.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281825.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587: IPR000994; KEGG: gtn:GTNG_2342 proline dipeptidase; PFAM: peptidase M24, structural domain; Creatinase; SPTR: Proline dipeptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain
YP_004281826.1	COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; HAMAP: Heat shock protein HslU; InterPro IPR013093: IPR019489: IPR003593: IPR004491; KEGG: saf:SULAZ_1537 ATP-dependent protease ATP-binding subunit HslU; PFAM: ATPase, AAA-2; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: Heat shock protein HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit
YP_004281827.1	COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; HAMAP: ATP-dependent protease hslV; InterPro IPR001353; KEGG: tye:THEYE_A1396 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta; SPTR: ATP-dependent protease subunit HslV; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit
YP_004281828.1	KEGG: geo:Geob_1483 hypothetical protein; SPTR:  uncharacterized protein
YP_004281829.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281830.1	COGs: COG0074 succinyl-CoA synthetase alpha subunit; InterPro IPR003781: IPR005811; KEGG: pmx:PERMA_1714 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(citrate cleavage enzyme); PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding; PRIAM: ATP citrate synthase; SPTR: ATP-citrate synthase (ATP-citrate (Pro-S-)-lyase)(Citrate cleavage enzyme); PFAM: CoA-ligase; Citrate synthase
YP_004281831.1	COGs: COG0045 succinyl-CoA synthetase beta subunit; InterPro IPR013650; KEGG: pmx:PERMA_1715 ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(citrate cleavage enzyme); PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; SPTR: ATP citrate lyase beta subunit; PFAM: ATP-grasp domain
YP_004281832.1	COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: sul:SYO3AOP1_0694 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type
YP_004281833.1	COGs: COG1048 Aconitase A; InterPro IPR001030: IPR000573: IPR006250; KEGG: tjr:TherJR_2355 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: Aconitate hydratase; TIGRFAM: Aconitase, PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, , Aquifex type
YP_004281834.1	COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: glo:Glov_0158 protein of unknown function UPF0027; PFAM: Uncharacterised protein family UPF0027; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein family UPF0027
YP_004281835.1	KEGG: nam:NAMH_0673 hypothetical protein; SPTR:  uncharacterized protein
YP_004281836.1	COGs: COG1542 conserved hypothetical protein; InterPro IPR007548; KEGG: aae:aq_752 hypothetical protein; PFAM: Protein of unknown function DUF505; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF505)
YP_004281837.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281838.1	COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterPro IPR003594: IPR013507: IPR014790; KEGG: saf:SULAZ_0436 DNA mismatch repair protein MutL; PFAM: ATPase-like, ATP-binding domain; DNA mismatch repair protein, C-terminal; MutL, C-terminal, dimerisation; SPTR: DNA mismatch repair protein mutL; PFAM: MutL C terminal dimerisation domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL
YP_004281839.1	COGs: COG1117 ABC-type phosphate transport system ATPase component; InterPro IPR003439: IPR003593: IPR005670; KEGG: hth:HTH_1712 ABC-type phosphate transport system ATP-binding protein; PFAM: ABC transporter-like; PRIAM: phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type phosphate transport system ATP-binding protein; TIGRFAM: phosphate transport system permease 1; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein
YP_004281840.1	COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR000515: IPR005672; KEGG: nis:NIS_0585 phosphate ABC transporter, permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: phosphate ABC transporter, permease PstA; TIGRFAM: phosphate transport system permease 2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease PstA
YP_004281841.1	COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR000515: IPR011864; KEGG: pmx:PERMA_1573 phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: phosphate ABC transporter, permease PstC; TIGRFAM: phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease PstC
YP_004281842.1	COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004013: IPR011708: IPR004365: IPR003141: IPR 004805; KEGG: gme:Gmet_1215 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_004281843.1	COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; InterPro IPR020582: IPR001095; KEGG: tal:Thal_0345 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_004281844.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: tye:THEYE_A0752 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain; transcriptional regulatory protein, C terminal
YP_004281845.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: tye:THEYE_A0751 sensor histidine kinase, PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Sensor histidine kinase, ; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004281846.1	InterPro IPR000326; KEGG: pmo:Pmob_1160 phosphoesterase PA-phosphatase related; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: phosphoesterase PA-phosphatase related; PFAM: PAP2 superfamily
YP_004281847.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sul:SYO3AOP1_0351 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004281848.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sul:SYO3AOP1_0350 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004281849.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sul:SYO3AOP1_0349 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family
YP_004281850.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545: IPR001650: IPR014001; KEGG: hth:HTH_0805 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004281851.1	COGs: COG1278 Cold shock protein; InterPro IPR002059: IPR011129; KEGG: rxy:Rxyl_0175 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; PFAM: 'Cold-shock' DNA-binding domain
YP_004281852.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR006076: IPR001327; KEGG: nth:Nther_1249 molybdopterin oxidoreductase Fe4s4 region; PFAM: FAD dependent oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; PRIAM: Glutamate synthase (NADPH); SPTR:  uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004281853.1	COGs: COG1410 methionine synthase I cobalamin-binding domain; InterPro IPR003726: IPR000489: IPR003759: IPR006158; KEGG: tit:Thit_1600 homocysteine S-methyltransferase; PFAM: Homocysteine S-methyltransferase; dihydropteroate synthase, DHPS; methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; PRIAM: methionine synthase; SPTR: Homocysteine S-methyltransferase; PFAM: Pterin binding enzyme; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: methyltransferase cognate corrinoid proteins, methanosarcina family; 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain
YP_004281854.1	COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; HAMAP: Adenine phosphoribosyl transferase; InterPro IPR000836: IPR005764; KEGG: gme:Gmet_1422 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Adenine phosphoribosyltransferase; SPTR: Adenine phosphoribosyltransferase; TIGRFAM: Adenine phosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase
YP_004281855.1	COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264: IPR001460; KEGG: sun:SUN_0350 penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1A; PFAM: Penicillin binding protein transpeptidase domain; transglycosylase; TIGRFAM: penicillin-binding protein, 1A family
YP_004281856.1	COGs: COG0188 type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205: IPR006691: IPR003587: IPR003586: IPR 005743: IPR006141; KEGG: aoe:Clos_0007 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; Hedgehog/intein hint, N-terminal; Hedgehog/intein hint domain, C-terminal; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, subunit A; Intein splice site; PFAM: Homing endonuclease; DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: intein C-terminal splicing region; DNA gyrase, A subunit
YP_004281857.1	COGs: COG0172 Seryl-tRNA synthetase; HAMAP: Seryl-tRNA synthetase; InterPro IPR015866: IPR002314: IPR002317; KEGG: pmx:PERMA_1558 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; PFAM: tRNA synthetase class II core domain (G, H, P, S and T); Seryl-tRNA synthetase N-terminal domain; TIGRFAM: seryl-tRNA synthetase
YP_004281858.1	InterPro IPR012902; KEGG: dat:HRM2_27690 FimT; SPTR: FimT; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004281859.1	InterPro IPR012902; KEGG: ppd:Ppro_0989 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004281860.1	InterPro IPR012902; KEGG: cyt:cce_3537 hypothetical protein; SPTR:  uncharacterized protein
YP_004281861.1	KEGG: mar:MAE_24820 hypothetical protein; SPTR: Similar to polygalacturonase
YP_004281862.1	COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: pmx:PERMA_1853 ABC transporter; PFAM: ABC transporter-like; PRIAM: sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter
YP_004281863.1	COGs: COG1934 conserved hypothetical protein; InterPro IPR005653: IPR014340; KEGG: pmx:PERMA_1724 lipopolysaccharide transport periplasmic protein LptA; PFAM: Organic solvent tolerance-like, N-terminal; SPTR:  uncharacterized protein; TIGRFAM: Lipopolysccharide-assembly, LptA; PFAM: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA
YP_004281864.1	InterPro IPR010664; KEGG: sul:SYO3AOP1_0207 protein of unknown function DUF1239; PFAM: Lipopolysccharide-assembly, LptC-related; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1239)
YP_004281865.1	COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023: IPR006549; KEGG: ftn:FTN_0905 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PRIAM: 3-deoxy-manno-octulosonate-8-phosphatase; SPTR: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; TIGRFAM: phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA
YP_004281866.1	COGs: COG4887 Uncharacterized metal-binding protein; InterPro IPR014997; KEGG: mja:MJ_0455 hypothetical protein; PFAM: Protein of unknown function DUF1847; SPTR: Uncharacterized protein MJ0455; PFAM: Protein of unknown function (DUF1847)
YP_004281867.1	COGs: COG0066 3-isopropylmalate dehydratase small subunit; HAMAP: 3-isopropylmalate dehydratase small subunit; InterPro IPR000573: IPR011824: IPR011827; KEGG: pmx:PERMA_0505 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; PRIAM: (R)-2-methylmalate dehydratase; SPTR: 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; 3-isopropylmalate dehydratase, small subunit, bacterial-like; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_004281868.1	COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; InterPro IPR001804: IPR004429; KEGG: pmx:PERMA_0387 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase
YP_004281869.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281870.1	COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR000534: IPR012280: IPR005986; KEGG: sul:SYO3AOP1_0687 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
YP_004281871.1	KEGG: iho:Igni_0929 roadblock/LC7 family protein; SPTR: Roadblock/LC7 family protein
YP_004281872.1	COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; HAMAP: metal-dependent hydrolase; KEGG: fno:Fnod_0635 metal-dependent hydrolase; SPTR: Metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily
YP_004281873.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: saf:SULAZ_1087 patatin; PFAM: Patatin; SPTR: Patatin; PFAM: Patatin-like phospholipase
YP_004281874.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR018392: IPR016047: IPR002482; KEGG: pmx:PERMA_1851 lipoprotein; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup; SPTR: lipoprotein; PFAM: peptidase family M23; LysM domain
YP_004281875.1	KEGG: msv:Mesil_1555 twin-arginine translocation protein, TatA/E family subunit; SPTR: Twin-arginine translocation protein, TatA/E family subunit
YP_004281876.1	InterPro IPR000440; KEGG: nam:NAMH_1423  proton-translocating NADH-quinone oxidoreductase, A subunit; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_004281877.1	COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006137: IPR006138; KEGG: nam:NAMH_1422 NADH-ubiquinone oxidoreductase 20 kda subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit
YP_004281878.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281879.1	COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR001268; KEGG: tye:THEYE_A1122 NADH-quinone oxidoreductase chain c 2; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH dehydrogenase (Ubiquinone) 30 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YP_004281880.1	COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; InterPro IPR001135; KEGG: sun:SUN_0846 NADH-quinone oxidoreductase, chain D; PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, chain D; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YP_004281881.1	COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR001694; KEGG: nam:NAMH_1420 NADH-quinone oxidoreductase chain 8; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase chain 8; PFAM: NADH dehydrogenase
YP_004281882.1	COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); KEGG: nam:NAMH_1419 NADH dehydrogenase subunit I; SPTR: NADH dehydrogenase subunit i
YP_004281883.1	KEGG: nmr:Nmar_0282 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_004281884.1	COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: hmu:Hmuk_1924 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_004281885.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516: IPR001750: IPR003945; KEGG: nam:NAMH_1416 NAD(P)H-quinone oxidoreductase chain 5 (NAD(P)Hdehydrogenase I, chain 5); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase I chain L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L
YP_004281886.1	COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR001750: IPR010227; KEGG: sun:SUN_0852 NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M
YP_004281887.1	COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR001750: IPR010096; KEGG: mta:Moth_0987 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N; TIGRFAM: NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N
YP_004281888.1	COGs: COG1416 conserved hypothetical protein; KEGG: afu:AF0913 hypothetical protein; SPTR:  uncharacterized protein; PFAM: DsrE/DsrF-like family
YP_004281889.1	COGs: COG0675 transposase and inactivated derivatives; InterPro IPR010095; KEGG: chy:CHY_0811 ISChy8, transposase; PFAM: transposase, IS605 OrfB, C-terminal; SPTR: ISChy8, transposase; PFAM:  transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004281890.1	COGs: COG3481 HD-superfamily hydrolase; InterPro IPR004365: IPR006674: IPR003607: IPR006675; KEGG: bpb:bpr_I2836 HD domain-containing protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: HD domain protein; TIGRFAM: HDIG; PFAM: HD domain; OB-fold nucleic acid binding domain; TIGRFAM: uncharacterized domain HDIG
YP_004281891.1	COGs: COG0150 phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR000728: IPR010918: IPR004733; KEGG: saf:SULAZ_0133 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: phosphoribosylformylglycinamidine cyclo-ligase; SPTR: phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase
YP_004281892.1	COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376: IPR004607; KEGG: pmx:PERMA_0010 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: phosphoribosylglycinamide formyltransferase; SPTR: phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent
YP_004281893.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: saf:SULAZ_0708 processing protease; PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal; SPTR: Processing protease; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16)
YP_004281894.1	COGs: COG1683 conserved hypothetical protein; InterPro IPR007553; KEGG: toc:Toce_1391 protein of unknown function DUF523; PFAM: Protein of unknown function DUF523; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF523)
YP_004281895.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: cpo:COPRO5265_1598 oxidoreductase, 2-nitropropane dioxygenase family; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase
YP_004281896.1	COGs: COG1729 conserved hypothetical protein; InterPro IPR019734: IPR014162; KEGG: saf:SULAZ_1659 TPR repeat protein; SPTR: TPR repeat protein; TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide repeat; TIGRFAM: tol-pal system protein YbgF
YP_004281897.1	KEGG: mfe:Mefer_1176 von Willebrand factor type A; SPTR: von Willebrand factor type A
YP_004281898.1	COGs: COG1260 Myo-inositol-1-phosphate synthase; InterPro IPR002587: IPR013021; KEGG: hth:HTH_1533 myo-inositol-1-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH-like; SPTR: 50S ribosomal protein L20; PFAM: Myo-inositol-1-phosphate synthase
YP_004281899.1	COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: ddf:DEFDS_0845 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase
YP_004281900.1	COGs: COG1355 dioxygenase; InterPro IPR002737; KEGG: aae:aq_890 hypothetical protein; PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related; SPTR: UPF0103 protein aq_890; PFAM: Memo-like protein
YP_004281901.1	COGs: COG0640 transcriptional regulator protein; InterPro IPR001845; KEGG: pmx:PERMA_0357 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: transcriptional regulator, ArsR family protein; PFAM: Bacterial regulatory protein, arsR family
YP_004281902.1	COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766: IPR005746; KEGG: saf:SULAZ_0121 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_004281903.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR013027: IPR005982; KEGG: ddf:DEFDS_0503 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase
YP_004281904.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: cdf:CD3010  cytochrome c biogenesis protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Cytochrome C biogenesis protein transmembrane protein family protein; PFAM: AhpC/TSA family
YP_004281905.1	COGs: COG0218 GTPase; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; InterPro IPR002917: IPR019987: IPR005225; KEGG: pmo:Pmob_1361 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain
YP_004281906.1	COGs: COG0497 ATPase involved in DNA repair; InterPro IPR003395: IPR004604; KEGG: pmx:PERMA_0874 DNA repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN
YP_004281907.1	COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: ddr:Deide_15690  Na+/H+ antiporter NhaD and related arsenite permeases (arsenical pump membrane protein)(anion permease ArsB/NhaD); PFAM: Divalent ion symporter; SPTR:  Na+/H+ antiporter NhaD and related arsenite permeases (Arsenical pump membrane protein)(Anion permease ArsB/NhaD); PFAM: Citrate transporter
YP_004281908.1	COGs: COG2862 membrane protein; InterPro IPR005134; KEGG: nam:NAMH_0669 hypothetical protein; PFAM: Uncharacterised protein family UPF0114, prokaryotic; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein family, UPF0114; TIGRFAM: conserved hypothetical transmembrane protein
YP_004281909.1	COGs: COG1536 Flagellar motor switch protein; InterPro IPR000090; KEGG: pmx:PERMA_0735 flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG; SPTR: Flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG
YP_004281910.1	COGs: COG1868 Flagellar motor switch protein; InterPro IPR001689: IPR001543; KEGG: pmx:PERMA_0734 flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA); SPTR: Flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM
YP_004281911.1	COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001543: IPR012826; KEGG: pmx:PERMA_0733 flagellar motor switch protein FliN; PFAM: Surface presentation of antigen (SpoA); SPTR: Flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN
YP_004281912.1	COGs: COG4786 Flagellar basal body rod protein; InterPro IPR001444: IPR010930: IPR020013; KEGG: pmx:PERMA_0732 flagellar basal-body rod protein FlgF; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal; SPTR: Flagellar hook basal-body protein FlgG; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins
YP_004281913.1	COGs: COG4786 Flagellar basal body rod protein; InterPro IPR001444: IPR010930: IPR020013: IPR012834; KEGG: pmx:PERMA_0731 flagellar basal-body rod protein FlgG; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; SPTR: Flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria
YP_004281914.1	COGs: COG1261 Flagellar basal body P-ring biosynthesis protein; InterPro IPR013974: IPR017585; KEGG: pmx:PERMA_0730  flagellar protein FlgA; PFAM: SAF domain; SPTR:  flagellar protein FlgA; TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; TIGRFAM: flagella basal body P-ring formation protein FlgA
YP_004281915.1	COGs: COG2063 Flagellar basal body L-ring protein; HAMAP: Flagellar L-ring protein; InterPro IPR000527; KEGG: saf:SULAZ_1334 flagellar L-ring protein FlgH; PFAM: Flagellar L-ring protein; SPTR: Flagellar L-ring protein; PFAM: Flagellar L-ring protein
YP_004281916.1	COGs: COG1706 Flagellar basal-body P-ring protein; HAMAP: Flagellar P-ring protein; InterPro IPR001782; KEGG: pmx:PERMA_0728 flagellar P-ring protein FlgI; PFAM: Flagellar P-ring protein; SPTR: Flagellar P-ring protein; PFAM: Flagellar P-ring protein
YP_004281917.1	InterPro IPR019301; KEGG: pmx:PERMA_0727 hypothetical protein; PFAM: Flagellar protein FlgJ, N-terminal; SPTR:  uncharacterized protein; PFAM: Rod binding protein
YP_004281918.1	COGs: COG1298 Flagellar biosynthesis pathway component FlhA; InterPro IPR001712: IPR006301; KEGG: pmx:PERMA_0726 flagellar biosynthesis protein FlhA; PFAM: type III secretion system FHIPEP; SPTR: Flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA
YP_004281919.1	COGs: COG1419 Flagellar GTP-binding protein; InterPro IPR000897: IPR003593: IPR020006; KEGG: nis:NIS_0616 flagellar biosynthesis protein FlhF; PFAM: Signal recognition particle, SRP54 subunit, GTPase; SMART: ATPase, AAA+ type, core; SPTR: Flagellar biosynthesis protein FlhF; TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF
YP_004281920.1	COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: sul:SYO3AOP1_1649 cobyrinic acid ac-diamide synthase; SPTR: Flagellar biosynthesis switch protein FlhG; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004281921.1	COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterPro IPR014284: IPR007627: IPR007630; KEGG: pmx:PERMA_0723 RNA polymerase sigma factor for flagellar operon; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor for flagellar operon; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family
YP_004281922.1	KEGG: sul:SYO3AOP1_1647 hypothetical protein; SPTR:  uncharacterized protein
YP_004281923.1	InterPro IPR019734; KEGG: pmx:PERMA_0721 tetratricopeptide repeat domain protein; SPTR: Tetratricopeptide repeat domain protein
YP_004281924.1	COGs: COG1815 Flagellar basal body protein; InterPro IPR006300; KEGG: pmx:PERMA_0720 flagellar basal-body rod protein FlgB; SPTR: Flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB
YP_004281925.1	COGs: COG1558 Flagellar basal body rod protein; InterPro IPR006299: IPR001444: IPR010930; KEGG: nis:NIS_0622 flagellar basal-body rod protein FlgC; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal; SPTR: Flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC
YP_004281926.1	COGs: COG1677 Flagellar hook-basal body protein; HAMAP: Flagellar hook-basal body complex protein FliE; InterPro IPR001624; KEGG: sul:SYO3AOP1_1643 flagellar hook-basal body complex subunit FliE; PFAM: Flagellar hook-basal body complex protein FliE; SPTR: Flagellar hook-basal body complex protein fliE; TIGRFAM: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE
YP_004281927.1	COGs: COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; InterPro IPR000067: IPR006182: IPR013556; KEGG: pmx:PERMA_0717 flagellar M-ring protein FliF; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal; SPTR: Flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein of YscJ/FliF family; Flagellar M-ring protein C-terminal; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)
YP_004281928.1	KEGG: nis:NIS_0625 hypothetical protein; SPTR:  uncharacterized protein
YP_004281929.1	COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; InterPro IPR005714: IPR004100: IPR000194: IPR003593; KEGG: pmx:PERMA_0715 flagellar protein export ATPase FliI; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; PRIAM: H(+)-transporting two-sector ATPase; SMART: ATPase, AAA+ type, core; SPTR: Flagellar protein export ATPase FliI; TIGRFAM: ATPase, type III secretion system, FliI/YscN; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family
YP_004281930.1	COGs: COG1843 Flagellar hook capping protein; InterPro IPR005648; KEGG: pmx:PERMA_0714 flagellar hook capping protein FlgD; PFAM: Flagellar hook capping protein; SPTR: Flagellar hook capping protein FlgD; PFAM: Flagellar hook capping protein
YP_004281931.1	COGs: COG1749 Flagellar hook protein FlgE; InterPro IPR020013: IPR001444: IPR011491: IPR010930; KEGG: nis:NIS_0628 flagellar basal body and hook protein FlgE; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; SPTR: Flagellar basal body and hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgB
YP_004281932.1	COGs: COG1580 Flagellar basal body-associated protein; InterPro IPR005503; KEGG: pmx:PERMA_0712 flagellar basal body-associated protein FliL; PFAM: Flagellar basal body-associated protein FliL; SPTR: Flagellar basal body-associated protein FliL; PFAM: Flagellar basal body-associated protein FliL
YP_004281933.1	COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001543; KEGG: nis:NIS_0630 flagellar motor switch protein FliN/FliY; PFAM: Surface presentation of antigen (SpoA); SPTR: Flagellar motor switch protein FliN/FliY; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN
YP_004281934.1	KEGG: pmx:PERMA_0710 hypothetical protein; SPTR:  uncharacterized protein
YP_004281935.1	COGs: COG1338 Flagellar biosynthesis pathway component FliP; InterPro IPR005837: IPR005838; KEGG: pmx:PERMA_0709 flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: Flagellar biosynthetic protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP
YP_004281936.1	COGs: COG1987 Flagellar biosynthesis pathway component FliQ; InterPro IPR006305: IPR002191; KEGG: sul:SYO3AOP1_1633 flagellar biosynthetic protein FliQ; PFAM: Bacterial export protein FliQ, family 3; SPTR: Flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ
YP_004281937.1	COGs: COG1684 Flagellar biosynthesis pathway component FliR; InterPro IPR006303: IPR002010; KEGG: pmx:PERMA_0707 flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; SPTR: Flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR
YP_004281938.1	COGs: COG1377 Flagellar biosynthesis pathway component FlhB; InterPro IPR006136: IPR006135; KEGG: pmx:PERMA_0706 flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; SPTR: Flagellar biosynthetic protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB
YP_004281939.1	KEGG: pmx:PERMA_1127 hypothetical protein; SPTR:  uncharacterized protein
YP_004281940.1	KEGG: mcp:MCAP_0861 hypothetical protein; SPTR:  uncharacterized protein
YP_004281941.1	InterPro IPR009875; KEGG: sul:SYO3AOP1_0197 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: type IV pilus assembly PilZ; PFAM: PilZ domain
YP_004281942.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506; KEGG: saf:SULAZ_0503 tRNA-specific 2-thiouridylase MnmA; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA-specific 2-thiouridylase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_004281943.1	HAMAP: ATP synthase subunit b; InterPro IPR002146; KEGG: sul:SYO3AOP1_1623 H+transporting two-sector ATPase B/B' subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: H+transporting two-sector ATPase B/B' subunit; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b
YP_004281944.1	HAMAP: ATP synthase subunit b; InterPro IPR002146; KEGG: pmx:PERMA_0180  ATP synthase F0 subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR:  ATP synthase F0 subunit b; PFAM: ATP synthase B/B' CF(0)
YP_004281945.1	COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); HAMAP: ATPase, F1 complex, OSCP/delta subunit; InterPro IPR000711; KEGG: hoh:Hoch_6065 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit
YP_004281946.1	COGs: COG0056 F0F1-type ATP synthase alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; InterPro IPR005294: IPR004100: IPR000194: IPR000793; KEGG: nis:NIS_1222 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit
YP_004281947.1	COGs: COG0224 F0F1-type ATP synthase gamma subunit; HAMAP: ATP synthase gamma chain; InterPro IPR000131; KEGG: ddf:DEFDS_1887 F0F1-type ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit
YP_004281948.1	COGs: COG0055 F0F1-type ATP synthase beta subunit; HAMAP: ATPase, F1 complex, beta subunit; InterPro IPR005722: IPR004100: IPR000194: IPR000793: IPR 003593; KEGG: csc:Csac_1970 F0F1 ATP synthase subunit beta; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP synthase subunit beta; TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit
YP_004281949.1	HAMAP: ATPase, F1 complex, delta/epsilon subunit; InterPro IPR001469: IPR020546; KEGG: rxy:Rxyl_1637 ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; SPTR: ATP synthase epsilon chain; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria)
YP_004281950.1	COGs: COG2033 Desulfoferrodoxin; InterPro IPR006311: IPR002742; KEGG: ddf:DEFDS_1019 superoxide reductase; PFAM: Desulfoferrodoxin, ferrous iron-binding domain; SPTR: Superoxide reductase; PFAM: Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin ferrous iron-binding domain; Tat (twin-arginine translocation) pathway signal sequence
YP_004281951.1	InterPro IPR001584; KEGG: saf:SULAZ_1706  transposase; PFAM: Integrase, catalytic core; SPTR:  transposase; PFAM: Integrase core domain
YP_004281952.1	COGs: COG0102 ribosomal protein L13; InterPro IPR005823: IPR005822; KEGG: aae:aq_1877 50S ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial-type; PFAM: ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_004281953.1	COGs: COG0103 ribosomal protein S9; InterPro IPR000754; KEGG: pmx:PERMA_0430 30S ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: ribosomal protein S09; PFAM: ribosomal protein S9/S16
YP_004281954.1	COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; InterPro IPR000706: IPR000534: IPR012280; KEGG: saf:SULAZ_0442 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation domain; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form
YP_004281955.1	COGs: COG0178 Excinuclease ATPase subunit; HAMAP: UvrABC system protein A; InterPro IPR004602: IPR003439: IPR003593; KEGG: aae:aq_686 excinuclease ABC subunit A; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: UvrABC system protein A; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_004281956.1	COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: tma:TM0508 recombination factor protein RarA/unknown domain fusion protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: UPF0189 protein TM_0508; PFAM: Macro domain
YP_004281957.1	COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: cbi:CLJ_B3213 16S ribosomal RNA methyltransferase RsmE; PFAM: ribosomal RNA small subunit methyltransferase E; SPTR:  uncharacterized protein; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family
YP_004281958.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR004176: IPR003959: IPR013093: IPR019489: IPR 003593; KEGG: aae:aq_1296 ATP-dependent Clp protease; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA)
YP_004281959.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: pmx:PERMA_1738 lipoprotein-releasing system ATP-binding protein LolD; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: lipoprotein-releasing system ATP-binding protein LolD; PFAM: ABC transporter
YP_004281960.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646: IPR006674; KEGG: hth:HTH_1228 poly A polymerase; PFAM: poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; SPTR: poly A polymerase; PFAM: HD domain; poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG
YP_004281961.1	COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: aar:Acear_0510 amidohydrolase; PFAM: Amidohydrolase 1; PRIAM: S-adenosylhomocysteine deaminase; SPTR: Amidohydrolase; PFAM: Amidohydrolase family
YP_004281962.1	COGs: COG1333 ResB protein required for cytochrome c biosynthesis; KEGG: gme:Gmet_2901 ResB-like; SPTR: ResB-like; PFAM: ResB-like family
YP_004281963.1	COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR017562: IPR002541; KEGG: gbm:Gbem_3453 cytochrome c-type biogenesis protein CcsB; PFAM: Cytochrome c assembly protein; SPTR: Heme export protein apocytochrome heme-lyase; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB
YP_004281964.1	COGs: COG1295 membrane protein; InterPro IPR004664; KEGG: htu:Htur_1631 ribonuclease BN; PFAM: ribonuclease BN-related; SPTR:  uncharacterized protein; PFAM: ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_004281965.1	COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721; KEGG: pmx:PERMA_1115 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase
YP_004281966.1	COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: tjr:TherJR_1960 protein of unknown function UPF0047; PFAM: Uncharacterised protein family UPF0047; SPTR:  uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme
YP_004281967.1	COGs: COG0011 conserved hypothetical protein; InterPro IPR002767; KEGG: pmx:PERMA_1600 hypothetical protein; PFAM: Protein of unknown function DUF77; SPTR:  uncharacterized protein; TIGRFAM: Protein of unknown function DUF77; PFAM: Domain of unknown function DUF77; TIGRFAM: uncharacterized protein, MTH1187 family
YP_004281968.1	COGs: COG1200 RecG-like helicase; InterPro IPR004609: IPR004365: IPR011545: IPR001650: IPR 014001; KEGG: aae:aq_2053 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase recG; TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG
YP_004281969.1	COGs: COG4783  Zn-dependent protease contains TPR repeats; InterPro IPR001440: IPR019734: IPR006597; KEGG: aae:aq_854 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR:  uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004281970.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004281971.1	KEGG: smu:SMU.261c  transcriptional regulator; SPTR:  transcriptional regulator
YP_004281972.1	COGs: COG0292 ribosomal protein L20; HAMAP: ribosomal protein L20; InterPro IPR005813; KEGG: aae:aq_952 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_004281973.1	HAMAP: ribosomal protein L35, non-mitochondrial; InterPro IPR001706: IPR021137; KEGG: tpd:Teth39_0768 50S ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35, non-mitochondrial; PFAM: ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_004281974.1	COGs: COG0290 translation initiation factor 3 (IF-3); HAMAP: translation initiation factor IF-3; InterPro IPR001288: IPR019814: IPR019815; KEGG: sth:STH1091 translation initiation factor IF-3; PFAM: translation initiation factor 3, N-terminal; translation initiation factor 3, C-terminal; SPTR: translation initiation factor IF-3; TIGRFAM: translation initiation factor 3; manually curated; PFAM: translation initiation factor IF-3, C-terminal domain; translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_004281975.1	COGs: COG0441 Threonyl-tRNA synthetase; InterPro IPR002320: IPR004095: IPR012947: IPR002314: IPR 004154; KEGG: tte:TTE1713 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase
YP_004281976.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460; KEGG: tye:THEYE_A1329 stage V sporulation protein D; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: peptidoglycan glycosyltransferase; SPTR: Stage V sporulation protein D; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain
YP_004281977.1	KEGG: ptm:GSPATT00031359001 hypothetical protein; SPTR: Chromosome undetermined scaffold_122, whole genome shotgun sequence; TIGRFAM: cell division protein FtsL
YP_004281978.1	COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR005854: IPR000583: IPR000836; KEGG: geo:Geob_2890 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; phosphoribosyltransferase; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; TIGRFAM: Amidophosphoribosyl transferase; PFAM: phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase
YP_004281979.1	COGs: COG0152 phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: SAICAR synthetase; InterPro IPR001636; KEGG: chy:CHY_1071 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: SAICAR synthetase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_004281980.1	COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002306: IPR002305; KEGG: cth:Cthe_0686 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_004281981.1	COGs: COG0117 Pyrimidine deaminase; InterPro IPR004794: IPR011549: IPR002125: IPR002734; KEGG: aae:aq_138 riboflavin specific deaminase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; PRIAM: diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: riboflavin biosynthesis protein ribD; TIGRFAM: riboflavin biosynthesis protein RibD; riboflavin-specific deaminase, C-terminal; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD
YP_004281982.1	COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013217; KEGG: hya:HY04AAS1_1575 methyltransferase type 12; PFAM: methyltransferase type 12; SPTR: methyltransferase type 12; PFAM: methyltransferase domain
YP_004281983.1	InterPro IPR001173; KEGG: sul:SYO3AOP1_1565 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR:  glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2
YP_004281984.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: sul:SYO3AOP1_1565 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004281985.1	InterPro IPR001173; KEGG: sul:SYO3AOP1_1564 hypothetical protein; PFAM: Glycosyl transferase, family 2; SPTR:  uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_004281986.1	KEGG: cyt:cce_2734 hypothetical protein; SPTR:  uncharacterized protein
YP_004281987.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173: IPR001440: IPR019734; KEGG: sul:SYO3AOP1_0991 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; Tetratricopeptide TPR-1; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004281988.1	COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492: IPR001029; KEGG: pmx:PERMA_1620 flagellar filament 34.5 kDa core protein (class B); PFAM: Flagellin, N-terminal; Flagellin, C-terminal helical region; SPTR: Flagellar filament 34.5 kDa core protein (Class B); PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region
YP_004281989.1	COGs: COG1334 Uncharacterized flagellar protein FlaG; InterPro IPR005186; KEGG: nis:NIS_0641 flagellar protein FlaG; PFAM: Flagellar protein FlaG protein; SPTR: Flagellar protein FlaG; PFAM: FlaG protein
YP_004281990.1	COGs: COG1345 Flagellar capping protein; InterPro IPR003481: IPR010809; KEGG: pmx:PERMA_1618  flagellar hook-associated protein 2 FliD; PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; SPTR:  flagellar hook-associated protein 2 FliD; PFAM: Flagellar hook-associated protein 2 C-terminus
YP_004281991.1	COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: pmx:PERMA_1617 flagellar protein FliS; PFAM: Flagellar protein FliS; SPTR: Flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS
YP_004281992.1	KEGG: osa:4328800 hypothetical protein; SPTR:  Carboxy-terminal kinesin 2
YP_004281993.1	COGs: COG0132 Dethiobiotin synthetase; HAMAP: Dethiobiotin synthase; InterPro IPR004472; KEGG: saf:SULAZ_1522 dethiobiotin synthase; SPTR: Dethiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase
YP_004281994.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: pmx:PERMA_1271 trk system, membrane component; PFAM: Cation transporter; SPTR: Trk system, membrane component; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_004281995.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037; KEGG: pmx:PERMA_1272 TrkA-N domain family protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: TrkA-N domain family protein; PFAM: TrkA-N domain; TrkA-C domain
YP_004281996.1	COGs: COG0728 membrane protein  virulence factor; InterPro IPR004268; KEGG: sul:SYO3AOP1_0967 integral membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN; SPTR: Integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN
YP_004281997.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: saf:SULAZ_1057 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_004281998.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005785: IPR001544; KEGG: aae:aq_1893 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Probable branched-chain-amino-acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase I; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group I
YP_004281999.1	KEGG: aca:ACP_1649 ribbon-helix-helix protein, CopG family; SPTR: Ribbon-helix-helix protein, copG family; PFAM: Ribbon-helix-helix protein, copG family
YP_004282000.1	InterPro IPR002716; KEGG: aca:ACP_1650 PIN domain protein; PFAM: PilT protein, N-terminal; SPTR: PIN domain protein; PFAM: PIN domain
YP_004282001.1	COGs: COG3894 Uncharacterized metal-binding protein; InterPro IPR001041; KEGG: drm:Dred_2206 ferredoxin; PFAM: Ferredoxin; SPTR:  uncharacterized protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_004282002.1	KEGG: pmx:PERMA_0613 hypothetical protein; SPTR:  uncharacterized protein
YP_004282003.1	COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: sul:SYO3AOP1_1754 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_004282004.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tjr:TherJR_2843 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004282005.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004282006.1	COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR006368: IPR001509; KEGG: pmx:PERMA_2002 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-mannose 4,6-dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase
YP_004282007.1	InterPro IPR013216; KEGG: aae:aq_1079 hypothetical protein; PFAM: methyltransferase type 11; SPTR:  uncharacterized protein; PFAM: methionine biosynthesis protein MetW
YP_004282008.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: aae:aq_1080 hypothetical protein; PFAM: Glycosyl transferase, group 1; SPTR:  uncharacterized protein; PFAM: Glycosyl transferases group 1
YP_004282009.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: sun:SUN_0329 hypothetical protein; PFAM: Acyltransferase 3; SPTR:  uncharacterized protein; PFAM: Acyltransferase family
YP_004282010.1	KEGG: nis:NIS_1393 hypothetical protein; SPTR:  uncharacterized protein
YP_004282012.1	KEGG: pmn:PMN2A_2181 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Cell division protein ZapA
YP_004282013.1	COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: mba:Mbar_A0370  ABC-2 type transport system permease; PFAM: ABC transporter; SPTR:  ABC-2 type transport system permease; PFAM: ABC transporter
YP_004282014.1	COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: aae:aq_1094 ABC transporter; PFAM: ABC transporter-like; PRIAM: Teichoic-acid-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter
YP_004282015.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: aae:aq_1093 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR:  uncharacterized protein; PFAM: Outer membrane efflux protein
YP_004282016.1	InterPro IPR010129: IPR006143; KEGG: nis:NIS_1402 type I secretion system membrane fusion protein; PFAM: Secretion protein HlyD; SPTR: type I secretion system membrane fusion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family
YP_004282017.1	COGs: COG4618 ABC-type protease/lipase transport system ATPase and permease components; InterPro IPR010128: IPR001140: IPR003439: IPR003593; KEGG: aae:aq_1097 ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter (HlyB subfamily); TIGRFAM: ATPase, type I secretion system, PrtD; PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: type I secretion system ABC transporter, PrtD family
YP_004282018.1	KEGG: sto:ST1701 hypothetical protein; SPTR:  uncharacterized protein ST1701
YP_004282019.1	COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR002308: IPR015803: IPR015273; KEGG: ddf:DEFDS_0838 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_004282020.1	COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551: IPR004518; KEGG: tye:THEYE_A2090 hypothetical protein; PFAM: NTP pyrophosphohydrolase MazG,  catalytic core; SPTR: Conserved protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_004282021.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: mvu:Metvu_1674 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein; PFAM: Universal stress protein family
YP_004282022.1	COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; HAMAP: methylthioribose-1-phosphate isomerase; InterPro IPR005251: IPR011559: IPR000649; KEGG: fno:Fnod_1519 aIF-2BI family translation initiation factor; PFAM: Initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: methylthioribose-1-phosphate isomerase; TIGRFAM:  translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase
YP_004282023.1	COGs: COG3156 type II secretory pathway component PulK; KEGG: glo:Glov_1274 general secretion pathway protein K; SPTR: General secretion pathway protein K; PFAM: General secretion pathway protein K
YP_004282024.1	KEGG: aae:aq_1843 hypothetical protein; SPTR: Predicted protein
YP_004282025.1	KEGG: pmx:PERMA_0819 hypothetical protein; SPTR:  uncharacterized protein; PFAM: General secretion pathway, M protein
YP_004282026.1	KEGG: geo:Geob_0886 hypothetical protein; SPTR:  uncharacterized protein
YP_004282027.1	COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Bacterial DNA recombination protein RuvA; InterPro IPR000085: IPR013849: IPR011114: IPR003583; KEGG: ddf:DEFDS_1659 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_004282028.1	COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterPro IPR004605: IPR008824: IPR003959: IPR008823: IPR 003593; KEGG: mpd:MCP_2302 Holliday junction ATP-dependent DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_004282029.1	COGs: COG0221 Inorganic pyrophosphatase; HAMAP: Inorganic pyrophosphatase; InterPro IPR008162; KEGG: saf:SULAZ_0579 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase; PFAM: Inorganic pyrophosphatase
YP_004282030.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004282031.1	COGs: COG3383 Uncharacterized anaerobic dehydrogenase; Contains Selenocysteine; InterPro IPR006478: IPR006963: IPR006656: IPR006657; KEGG: ant:Arnit_0741 formate dehydrogenase subunit alpha; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; PRIAM: Nitrate reductase; SPTR: Formate dehydrogenase, alpha subunit; TIGRFAM: Formate dehydrogenase, alpha subunit; manually curated; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type
YP_004282032.1	COGs: COG1142 Fe-S-cluster-containing hydrogenase components 2; KEGG: ant:Arnit_0730 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_004282033.1	InterPro IPR007167; KEGG: mka:MK1247 ferrous ion uptake system subunit; PFAM: Ferrous iron transporter, FeoA subunit; SPTR: Ferrous ion uptake system subunit; PFAM: FeoA domain
YP_004282034.1	COGs: COG0370 Fe2+ transport system protein B; InterPro IPR005225: IPR003373: IPR002917: IPR011619: IPR 011642: IPR011640; KEGG: tte:TTE1858 ferrous ion uptake system protein FeoB ( GTPase); PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous ion uptake system protein FeoB (Predicted GTPase); TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_004282035.1	COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504: IPR003593; KEGG: pmx:PERMA_0424 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; TIGRFAM: DNA repair protein RadA
YP_004282036.1	COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: aae:aq_1598 hypothetical protein; PFAM: tRNA-dihydrouridine synthase; SPTR: Probable tRNA-dihydrouridine synthase; PFAM: dihydrouridine synthase (Dus); TIGRFAM:  TIM-barrel protein, nifR3 family
YP_004282037.1	COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR007197; KEGG: tye:THEYE_A0358 radical SAM domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004282038.1	COGs: COG0585 conserved hypothetical protein; InterPro IPR001656; KEGG: pmx:PERMA_1706 tRNA pseudouridine synthase D; PFAM: Pseudouridine synthase, TruD; SPTR: tRNA pseudouridine synthase D; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: tRNA pseudouridine synthase, TruD family
YP_004282039.1	COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645: IPR013221: IPR004101; KEGG: sul:SYO3AOP1_1510 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal; SPTR: FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_004282040.1	COGs: COG1267 phosphatidylglycerophosphatase A and related protein; InterPro IPR007686; KEGG: aae:aq_314 hypothetical protein; PFAM: phosphatidylglycerophosphatase A; SPTR:  uncharacterized protein; PFAM: phosphatidylglycerophosphatase A
YP_004282041.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR004549: IPR005481: IPR005479: IPR005482; KEGG: aae:aq_1470 biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Pyruvate carboxylase; SPTR: Biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_004282042.1	COGs: COG5016 Pyruvate/oxaloacetate carboxyltransferase; InterPro IPR005776: IPR000891: IPR003379: IPR000089; KEGG: pmx:PERMA_0625 pyruvate carboxylase subunit B; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase; Biotin/lipoyl attachment; PRIAM: Pyruvate carboxylase; SPTR: Oxaloacetate decarboxylase alpha subunit; TIGRFAM: Oxaloacetate decarboxylase, alpha subunit; PFAM: HMGL-like; Biotin-requiring enzyme; Conserved carboxylase domain; TIGRFAM: oxaloacetate decarboxylase alpha subunit
YP_004282043.1	COGs: COG0529 Adenylylsulfate kinase and related kinase; HAMAP: Adenylylsulphate kinase, C-terminal; InterPro IPR002891; KEGG: pmx:PERMA_1989 adenylylsulfate kinase; PFAM: Adenylylsulphate kinase, C-terminal; PRIAM: Adenylyl-sulfate kinase; SPTR: Adenylyl-sulfate kinase; TIGRFAM: Adenylylsulphate kinase, C-terminal; PFAM: Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK)
YP_004282044.1	COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase); HAMAP: Sulphate adenylyltransferase, subgroup; InterPro IPR002650: IPR020792; KEGG: pmx:PERMA_1983 sulfate adenylyltransferase; PFAM: Sulphate adenylyltransferase; PRIAM: sulfate adenylyltransferase; SPTR: sulfate adenylyltransferase; TIGRFAM: Sulphate adenylyltransferase; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase
YP_004282045.1	KEGG: aae:aq_1446 hypothetical protein; SPTR: Uncharacterized protein aq_1446
YP_004282046.1	KEGG: pmx:PERMA_2012 hypothetical protein; SPTR:  uncharacterized protein
YP_004282047.1	InterPro IPR002934; KEGG: hth:HTH_0798 hypothetical protein; PFAM: Nucleotidyltransferase; SPTR:  uncharacterized protein; PFAM: Nucleotidyltransferase domain
YP_004282048.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017472: IPR017475: IPR003362; KEGG: pmx:PERMA_2008  undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR:  undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP
YP_004282049.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: gka:GK3317 O-antigen transporter; PFAM: polysaccharide biosynthesis protein; SPTR: O-antigen transporter; PFAM: polysaccharide biosynthesis protein
YP_004282050.1	COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR004379: IPR000172: IPR015899; KEGG: sul:SYO3AOP1_1566 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; Glucose-methanol-choline oxidoreductase, N-terminal; PRIAM: UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase
YP_004282051.1	KEGG: sul:SYO3AOP1_1567 hypothetical protein; SPTR:  uncharacterized protein
YP_004282052.1	KEGG: xcb:XC_2609 hypothetical protein; SPTR:  uncharacterized protein
YP_004282053.1	COGs: COG1598 conserved hypothetical protein; InterPro IPR005357; KEGG: cpb:Cphamn1_1957 protein of unknown function UPF0150; PFAM: Uncharacterised protein family UPF0150; SPTR:  uncharacterized protein; PFAM: Uncharacterised protein family (UPF0150)
YP_004282054.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dau:Daud_1694 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2
YP_004282055.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pmx:PERMA_2003 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004282056.1	COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR006375: IPR005835: IPR001538; KEGG: pmx:PERMA_2004 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
YP_004282058.1	KEGG: mvu:Metvu_1073 adenine deaminase; SPTR:  uncharacterized protein Sb10g005740
YP_004282059.1	KEGG: sli:Slin_5131 hypothetical protein; SPTR: Toxin-antitoxin system, toxin component, RelE family
YP_004282060.1	KEGG: saf:SULAZ_0636 hypothetical protein; SPTR:  uncharacterized protein
YP_004282061.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005907: IPR005835; KEGG: saf:SULAZ_0360 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form
YP_004282062.1	COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: saf:SULAZ_0363 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase
YP_004282063.1	COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888: IPR001509; KEGG: saf:SULAZ_0364 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_004282064.1	InterPro IPR008538; KEGG: pmx:PERMA_2014 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF820)
YP_004282065.1	InterPro IPR002934; KEGG: bts:Btus_3148 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR:  uncharacterized protein; PFAM: Nucleotidyltransferase domain
YP_004282066.1	COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: sul:SYO3AOP1_1531 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_004282067.1	COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886: IPR001509; KEGG: pmx:PERMA_2007 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase
YP_004282068.1	COGs: COG1287 membrane protein required for N-linked glycosylation; InterPro IPR003674; KEGG: ddf:DEFDS_0397 hypothetical protein; PFAM: Oligosaccharyl transferase, STT3 subunit; SPTR:  uncharacterized protein; PFAM: Oligosaccharyl transferase STT3 subunit
YP_004282069.1	COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482: IPR000523: IPR003593; KEGG: gem:GM21_3780 Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein
YP_004282070.1	KEGG: pvx:PVX_002740 helicase; SPTR:  uncharacterized protein
YP_004282071.1	COGs: COG0065 3-isopropylmalate dehydratase large subunit; HAMAP: Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; InterPro IPR011823: IPR011826: IPR006251: IPR001030; KEGG: tjr:TherJR_0364 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit, prokaryotic; Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase
YP_004282072.1	COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: pis:Pisl_0233 ABC transporter related; PFAM: ABC transporter-like; PRIAM: phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Zinc ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004282073.1	KEGG: ddf:DEFDS_1184 hypothetical protein; SPTR:  uncharacterized protein
YP_004282074.1	COGs: COG0574 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR010121: IPR002192: IPR008279: IPR000121; KEGG: ddf:DEFDS_0235 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; PRIAM: Pyruvate, phosphate dikinase; SPTR: Pyruvate phosphate dikinase; TIGRFAM: Pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase
YP_004282075.1	COGs: COG0751 Glycyl-tRNA synthetase beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; InterPro IPR015944: IPR002311; KEGG: ppd:Ppro_3059 glycyl-tRNA synthetase subunit beta; PFAM: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase beta subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; PFAM: Glycyl-tRNA synthetase beta subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit
YP_004282076.1	COGs: COG0752 Glycyl-tRNA synthetase alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; InterPro IPR002310; KEGG: pmx:PERMA_0570 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit
YP_004282077.1	COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR004479: IPR018317; KEGG: abi:Aboo_0657 ExsB protein; PFAM: Queuosine synthesis-like; SPTR: ExsB protein; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: ExsB; TIGRFAM: exsB protein
YP_004282078.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR004559: IPR007197: IPR010723: IPR006638; KEGG: sul:SYO3AOP1_1442 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR:  oxygen-independent coproporphyrinogen III oxidase; TIGRFAM:  oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM:  oxygen-independent coproporphyrinogen III oxidase
YP_004282079.1	InterPro IPR001440: IPR019734; KEGG: tet:TTHERM_01156780 SLEI family protein; PFAM: Tetratricopeptide TPR-1; SPTR: SLEI family protein
YP_004282080.1	InterPro IPR010095; KEGG: aae:aq_1459 neutral protease; PFAM: transposase, IS605 OrfB, C-terminal; SPTR: Neutral protease; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM:  transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004282081.1	InterPro IPR012902; KEGG: nis:NIS_0334 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004282082.1	KEGG: nde:NIDE2024 hypothetical protein; SPTR:  uncharacterized protein
YP_004282083.1	COGs: COG0078 ornithine carbamoyltransferase; HAMAP: ornithine carbamoyltransferase; InterPro IPR002292: IPR006132: IPR006131; KEGG: afl:Aflv_2146 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; PRIAM: ornithine carbamoyltransferase; SPTR: ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase
YP_004282084.1	HAMAP: ribosomal protein S20; InterPro IPR002583; KEGG: pmx:PERMA_0399 ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_004282085.1	COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: tko:TK0971 hypothetical protein; PFAM: Protein of unknown function DUF125, transmembrane; SPTR: Hypothetical membrane protein, conserved, DUF125 family; PFAM: Rubrerythrin; VIT family; TIGRFAM: conserved hypothetical protein TIGR00267
YP_004282086.1	manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2; peptide chain release factor H
YP_004282087.1	COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR000241; KEGG: pca:Pcar_2256 N6-adenine-specific DNA methylase; PFAM:  RNA methylase; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: Predicted N6-adenine-specific DNA methylase; PFAM:  RNA methylase family UPF0020
YP_004282088.1	COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: geo:Geob_2102 lipid-A-disaccharide synthase; PFAM: Glycosyl transferase, family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: Glycosyl transferase, family 19; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase
YP_004282089.1	COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR006221: IPR000991; KEGG: gme:Gmet_2496 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase, component II; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_004282090.1	COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: ttr:Tter_1578 periplasmic solute binding protein; PFAM: ABC transporter metal-binding lipoprotein; SPTR: Periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family
YP_004282091.1	COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR006274: IPR002474: IPR000991; KEGG: pca:Pcar_1613 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase small chain; TIGRFAM: Carbamoyl phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_004282092.1	COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR011777; KEGG: pth:PTH_0557 dehydrogenases; SPTR: Dehydrogenases; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: geranylgeranyl reductase family
YP_004282093.1	COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR003402: IPR002478; KEGG: aae:aq_2071 hypothetical protein; PFAM: Protein of unknown function Met10; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR:  uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase
YP_004282094.1	COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005771: IPR005835; KEGG: cbt:CLH_2921 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: UTP--glucose-1-phosphate uridylyltransferase; SPTR: UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase
YP_004282095.1	COGs: COG0466 ATP-dependent Lon protease; InterPro IPR004815: IPR003111: IPR003959: IPR003593; KEGG: pmx:PERMA_1161 ATP-dependent protease La; PFAM: peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: peptidase S16, ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_004282096.1	COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: cyc:PCC7424_5281 protein of unknown function DUF752; PFAM: Protein of unknown function DUF752; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF752)
YP_004282097.1	KEGG: saf:SULAZ_0042 ATPase with chaperone activity, ATP-binding subunit; SPTR: ATPase with chaperone activity, ATP-binding subunit
YP_004282098.1	HAMAP: ATPase, F0 complex, subunit C; InterPro IPR005953: IPR000454: IPR002379; KEGG: pmx:PERMA_0193 ATP synthase C chain (lipid-binding protein); PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase F0, C subunit; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c
YP_004282099.1	COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATP synthase subunit a; InterPro IPR000568; KEGG: nis:NIS_0853 F0F1 ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_004282100.1	KEGG: tkm:TK90_0752 cation antiporter; SPTR:  uncharacterized protein
YP_004282101.1	KEGG: drt:Dret_2089 ATP synthase I; SPTR: ATP synthase I; PFAM:  F0F1-ATPase subunit (ATPase_gene1)
YP_004282102.1	COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; InterPro IPR004639: IPR005814; KEGG: tjr:TherJR_1142 glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; PRIAM: Glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase
YP_004282103.1	COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807; KEGG: gur:Gura_4056 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; PRIAM: Imidazoleglycerol-phosphate dehydratase; SPTR: Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase
YP_004282104.1	COGs: COG0077 Prephenate dehydratase; InterPro IPR010958: IPR010957: IPR020822: IPR001086: IPR 002912; KEGG: aae:aq_951 chorismate mutase/prephenate dehydratase; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; SPTR: P-protein; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; Chorismate mutase, high GC Gram-positive bacteria/archaeal; PFAM: Prephenate dehydratase; Chorismate mutase type II; ACT domain; TIGRFAM: chorismate mutase domain of T-protein; chorismate mutase domain of gram positive AroA protein; chorismate mutase domain of proteobacterial P-protein, clade 2; monofunctional chorismate mutase, high GC gram positive type
YP_004282105.1	InterPro IPR013429; KEGG: tma:TM1186 hypothetical protein; PFAM: Regulatory protein, FmdB, SPTR:  uncharacterized protein; TIGRFAM: Regulatory protein, FmdB, PFAM: Zinc ribbon domain; TIGRFAM:  regulatory protein, FmdB family
YP_004282106.1	COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR002649: IPR016009; KEGG: pmx:PERMA_1163 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_004282107.1	COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR011961: IPR002676: IPR007903; KEGG: ttm:Tthe_1471 16S rRNA processing protein RimM; PFAM: PRC-barrel; RimM protein; SPTR: 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM
YP_004282108.1	COGs: COG0824 thioesterase; InterPro IPR006684: IPR006683; KEGG: rsd:TGRD_586  thioesterase; PFAM: Thioesterase superfamily; SPTR:  uncharacterized protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_004282109.1	COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: ddf:DEFDS_1642 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD; PFAM: Carboxylyase-related; SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD; TIGRFAM: menaquinone biosynthesis decarboxylase, SCO4490 family; Carboxylyase-related; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases; menaquinone biosynthesis decarboxylase, SCO4490 family
YP_004282110.1	COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: str:Sterm_2941 protein of unknown function DUF34; PFAM: NGG1p interacting factor 3, NIF3; SPTR:  uncharacterized protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family
YP_004282111.1	COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: hth:HTH_1283 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR:  uncharacterized protein; PFAM:  zinc ribbon domain
YP_004282112.1	KEGG: tjr:TherJR_1488 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF964)
YP_004282113.1	COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; KEGG: tmt:Tmath_0913 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_004282114.1	COGs: COG0233 ribosome recycling factor; HAMAP: ribosome recycling factor, bacterial-like; InterPro IPR002661: IPR015998; KEGG: pmx:PERMA_0234 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_004282115.1	COGs: COG0528 Uridylate kinase; InterPro IPR015963: IPR001048; KEGG: pmx:PERMA_0233 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: UMP kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase
YP_004282116.1	COGs: COG0264 translation elongation factor Ts; HAMAP: translation elongation factor EFTs/EF1B; InterPro IPR001816: IPR000449: IPR014039; KEGG: pmx:PERMA_0232 elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: translation elongation factor EFTs/EF1B; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts
YP_004282117.1	COGs: COG0052 ribosomal protein S2; InterPro IPR005706: IPR001865; KEGG: gct:GC56T3_2304 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_004282118.1	InterPro IPR002781; KEGG: kko:Kkor_2412 protein of unknown function DUF81; PFAM: Protein of unknown function DUF81; SPTR:  uncharacterized protein; PFAM: sulfite exporter TauE/SafE
YP_004282119.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004282120.1	COGs: COG0648 Endonuclease IV; HAMAP: Endodeoxyribonuclease IV; InterPro IPR001719: IPR012307; KEGG: nis:NIS_0286 endonuclease IV; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: deoxyribonuclease IV (phage-T(4)-induced); SMART: Endodeoxyribonuclease IV; SPTR: Probable endonuclease 4; TIGRFAM: Endodeoxyribonuclease IV; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1)
YP_004282121.1	COGs: COG1926 phosphoribosyltransferase; InterPro IPR000836; KEGG: toc:Toce_1648 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain
YP_004282122.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: pmx:PERMA_0759 peptidase, M23/M37 family; PFAM: peptidase M23; SPTR: peptidase, M23/M37 family; PFAM: peptidase family M23
YP_004282123.1	KEGG: sul:SYO3AOP1_1597 hypothetical protein; SPTR:  lipoprotein
YP_004282124.1	COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR005259: IPR011545: IPR001650: IPR014001; KEGG: sus:Acid_0690 replication restart DNA helicase PriA; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Replication restart DNA helicase PriA; TIGRFAM: Primosomal protein n; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'
YP_004282126.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ddf:DEFDS_0602 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase; PFAM: Glycosyl transferases group 1
YP_004282127.1	InterPro IPR001173; KEGG: pmx:PERMA_0780 lipopolysaccharide core biosynthesis glycosyltransferase WaaE; PFAM: Glycosyl transferase, family 2; SPTR: Lipopolysaccharide core biosynthesis glycosyltransferase WaaE; PFAM: Glycosyl transferase family 2
YP_004282128.1	InterPro IPR002509; KEGG: saf:SULAZ_1151 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: polysaccharide deacetylase; PFAM: polysaccharide deacetylase
YP_004282129.1	COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424: IPR006204; KEGG: pmx:PERMA_1286 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_004282130.1	KEGG: dak:DaAHT2_2118 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Doubled CXXCH motif (Paired_CXXCH_1)
YP_004282131.1	InterPro IPR012902; KEGG: pmx:PERMA_0976 prokaryotic N-methylation site; SPTR: Prokaryotic N-methylation site; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004282132.1	COGs: COG2804 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831: IPR001482: IPR003593; KEGG: tte:TTE1262 pili biogenesis protein PilB-like ATPase; PFAM: type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Predicted ATPases involved in pili biogenesis, PilB homologs; PFAM: type II/IV secretion system protein; GSPII_E N-terminal domain
YP_004282133.1	InterPro IPR012902; KEGG: tye:THEYE_A1502  hemagglutinin-related protein; SPTR:  hemagglutinin-related protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004282134.1	InterPro IPR012902; KEGG: pmx:PERMA_0970  Ig family protein; SPTR:  Ig family protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004282135.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR007730: IPR001440: IPR019734; KEGG: cyt:cce_0481 hypothetical protein; PFAM: Tetratricopeptide TPR-1; Sporulation related domain; SPTR: TPR repeat:TPR repeat; PFAM: Tetratricopeptide repeat; Sporulation related domain
YP_004282136.1	COGs: COG1450 type II secretory pathway component PulD; InterPro IPR011662: IPR004846; KEGG: tye:THEYE_A0212 type II protein secretion protein-like protein; PFAM: type II/III secretion system; Secretin/TonB, short N-terminal; SPTR: type II protein secretion protein-like protein; PFAM: Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IVB pilus formation outer membrane protein, R64 PilN family; pilus (MSHA type) biogenesis protein MshL
YP_004282137.1	KEGG: dth:DICTH_1052 hypothetical protein; SPTR:  uncharacterized protein
YP_004282138.1	KEGG: ehi:EHI_197310 phosphatidylinositol 3- and 4-kinase family; SPTR:  uncharacterized protein
YP_004282139.1	KEGG: baf:BAPKO_0236 hypothetical protein; SPTR:  uncharacterized protein
YP_004282140.1	COGs: COG1459 type II secretory pathway component PulF; InterPro IPR018076; KEGG: mmb:Mmol_0245 type II secretion system protein; PFAM: type II secretion system F domain; SPTR: type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain
YP_004282141.1	COGs: COG1196 Chromosome segregation ATPase; InterPro IPR011890: IPR003395; KEGG: tte:TTE1465 chromosome segregation ATPase; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: Chromosome segregation ATPases; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type
YP_004282142.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sul:SYO3AOP1_0164 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 5'-epimerase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_004282143.1	COGs: COG0305 Replicative DNA helicase; InterPro IPR007692: IPR006141: IPR007693: IPR007694: IPR 003587: IPR003586; KEGG: rmr:Rmar_0015 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SMART: Hedgehog/intein hint, N-terminal; Hedgehog/intein hint domain, C-terminal; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; Intein splice site; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase; intein N-terminal splicing region; intein C-terminal splicing region
YP_004282144.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR005256: IPR006805: IPR015890; KEGG: aae:aq_582 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component I; TIGRFAM: Anthranilate synthase component I; PFAM: chorismate binding enzyme; Anthranilate synthase component I, N terminal region; TIGRFAM: anthranilate synthase component I, non-proteobacterial lineages
YP_004282145.1	InterPro IPR006645: IPR005824; KEGG: ddf:DEFDS_1351 transcriptional activator RfaH; PFAM: transcription antitermination protein, NusG, N-terminal; SMART: KOW; SPTR: transcriptional activator RfaH; PFAM: transcription termination factor nusG; KOW motif
YP_004282146.1	InterPro IPR010095; KEGG: aae:aq_1459 neutral protease; PFAM: transposase, IS605 OrfB, C-terminal; SPTR: Neutral protease; TIGRFAM: transposase, IS605 OrfB, C-terminal; PFAM: Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004282147.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: pmx:PERMA_1408 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_004282148.1	KEGG: gur:Gura_1036 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3108)
YP_004282149.1	COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: sul:SYO3AOP1_1530 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_004282150.1	COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; InterPro IPR005882: IPR005835: IPR001451; KEGG: fno:Fnod_0605 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; PRIAM: Glucosamine-1-phosphate N-acetyltransferase; SPTR: Bifunctional protein glmU; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
YP_004282151.1	COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798; KEGG: msi:Msm_1143 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR:  uncharacterized protein; PFAM: Indole-3-glycerol phosphate synthase
YP_004282152.1	InterPro IPR000866; KEGG: tte:TTE1026 thiol-disulfide isomerase and thioredoxins; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol-disulfide isomerase and thioredoxins; PFAM: AhpC/TSA family
YP_004282153.1	HAMAP: ribosomal protein L28; InterPro IPR001383; KEGG: csc:Csac_1230 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal L28 family; TIGRFAM: ribosomal protein L28
YP_004282154.1	COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002303: IPR002300: IPR013155: IPR019499; KEGG: ddf:DEFDS_0507 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valyl-tRNA synthetase; TIGRFAM: Valyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase
YP_004282155.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: tye:THEYE_A1388 cytosine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: Cytosine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004282156.1	COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR013765: IPR003593; KEGG: tkm:TK90_1616 RecA protein; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: Protein recA; TIGRFAM: DNA recombination and repair protein RecA; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_004282157.1	COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR006321: IPR001482: IPR003593; KEGG: ddf:DEFDS_0037 twitching motility protein PilT; PFAM: type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching motility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_004282158.1	COGs: COG2137 conserved hypothetical protein; InterPro IPR003783; KEGG: pmr:PMI2663 regulatory protein; PFAM: Regulatory protein RecX; SPTR:  uncharacterized protein; PFAM: RecX family
YP_004282159.1	COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR002318: IPR018164: IPR012947: IPR003156; KEGG: saf:SULAZ_0881 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; phosphoesterase, DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase
YP_004282160.1	COGs: COG1635 Flavoprotein involved in thiazole biosynthesis; HAMAP: thiazole biosynthetic enzyme; InterPro IPR002922; KEGG: tjr:TherJR_1442 thiazole biosynthesis enzyme; SPTR:  thiazole biosynthetic enzyme; TIGRFAM: Thiamine biosynthesis Thi4 protein; PFAM: Thi4 family; TIGRFAM: thiazole biosynthesis enzyme
YP_004282161.1	COGs: COG0422 Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: tit:Thit_1845 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; SPTR: phosphomethylpyrimidine synthase; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC
YP_004282162.1	COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: pmx:PERMA_1004 eal/PAS/GGDEF domain protein; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted; SPTR: Eal/pas/ggdef domain protein; PFAM: EAL domain
YP_004282163.1	COGs: COG0107 Imidazoleglycerol-phosphate synthase; HAMAP: histidine biosynthesis, HisF; InterPro IPR004651: IPR006062; KEGG: aae:aq_181 imidazole glycerol phosphate synthase subunit HisF; PFAM: histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: histidine biosynthesis, HisF; PFAM: histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_004282164.1	COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR006273: IPR000836; KEGG: cob:COB47_1171 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyltransferase, Thermus type; PFAM: phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase, Thermus family
YP_004282165.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: pmx:PERMA_1511 octaprenyl-diphosphate synthase; PFAM: polyprenyl synthetase; PRIAM: trans-hexaprenyltranstransferase; SPTR: Octaprenyl-diphosphate synthase; PFAM: polyprenyl synthetase
YP_004282166.1	KEGG: aae:aq_097 hypothetical protein; SPTR: Uncharacterized protein aq_097
YP_004282167.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dae:Dtox_0522 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family
YP_004282168.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sul:SYO3AOP1_1133 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004282169.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: pmx:PERMA_1544 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004282170.1	COGs: COG0701 permease; InterPro IPR005524; KEGG: aae:aq_1388 hypothetical protein; PFAM: Protein of unknown function DUF318, transmembrane; SPTR:  uncharacterized protein; PFAM: Predicted permease
YP_004282171.1	KEGG: hth:HTH_1779 glutaredoxin family protein; SPTR: Glutaredoxin family protein; TIGRFAM: small redox-active disulfide protein 2
YP_004282172.1	COGs: COG3547 transposase and inactivated derivatives; InterPro IPR003346; KEGG: llo:LLO_2911 transposase; PFAM: transposase, IS116/IS110/IS902; SPTR: transposase; PFAM: transposase IS116/IS110/IS902 family; transposase
YP_004282173.1	InterPro IPR002781; KEGG: dps:DP2513 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Conserved hypothetical membrane protein; PFAM: sulfite exporter TauE/SafE
YP_004282174.1	InterPro IPR001763; KEGG: dde:Dde_2786 rhodanese-like protein; SMART: Rhodanese-like; SPTR: Rhodanese-like; PFAM: Rhodanese-like domain
YP_004282175.1	InterPro IPR001845; KEGG: ddf:DEFDS_1673 AsrR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: transcriptional regulator, AsrR family; PFAM: Bacterial regulatory protein, arsR family
YP_004282176.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR010044: IPR000845; KEGG: pca:Pcar_2021 methylthioadenosine phosphorylase; PFAM: Nucleoside phosphorylase; PRIAM: S-methyl-5'-thioadenosine phosphorylase; SPTR: methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: phosphorylase superfamily; TIGRFAM: 5'-deoxy-5'-methylthioadenosine phosphorylase
YP_004282177.1	KEGG: nam:NAMH_0283 hypothetical protein; SPTR:  uncharacterized protein
YP_004282178.1	COGs: COG0167 dihydroorotate dehydrogenase; InterPro IPR005720: IPR012135; KEGG: sat:SYN_02850 dihydroorotate dehydrogenase, catalytic subunit; PFAM: dihydroorotate dehydrogenase, class 1/ 2; SPTR: dihydroorotate dehydrogenase, catalytic subunit; TIGRFAM: dihydroorotate dehydrogenase, class 1, core; PFAM: dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein
YP_004282179.1	COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR001566: IPR010280; KEGG: pmx:PERMA_1601 23S rRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase; SPTR: 23S rRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA methyltransferase/RumA; PFAM: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA
YP_004282180.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660: IPR004089; KEGG: pmx:PERMA_0737  methyl-accepting chemotaxis transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SPTR:  methyl-accepting chemotaxis transducer; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004282181.1	InterPro IPR009875; KEGG: pmx:PERMA_0736 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR:  uncharacterized protein; PFAM: PilZ domain
YP_004282182.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR020050: IPR007197: IPR006638; KEGG: ddf:DEFDS_0011 hypothetical protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR:  uncharacterized protein; TIGRFAM: menaquinone biosynthesis protein; FO synthase, subunit 2; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily; menaquinone biosynthesis protein, SCO4550 family
YP_004282183.1	COGs: COG1484 DNA replication protein; InterPro IPR003593; KEGG: sul:SYO3AOP1_1254 DNA replication protein DnaC; SMART: ATPase, AAA+ type, core; SPTR: DNA replication protein DnaC; PFAM: IstB-like ATP binding protein
YP_004282184.1	COGs: COG0061 sugar kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; InterPro IPR002504; KEGG: geo:Geob_3461 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; PRIAM: NAD(+) kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase
YP_004282185.1	InterPro IPR001258; KEGG: mlo:mll4586 periplasmic ATP/GTP-binding protein; PFAM: NHL repeat; SPTR: Periplasmic ATP/GTP-binding protein
YP_004282186.1	COGs: COG1660 P-loop-containing kinase; HAMAP: ATPase, P-loop-containing; InterPro IPR005337; KEGG: aca:ACP_0619 hypothetical protein; SPTR: UPF0042 nucleotide-binding protein ACP_0619; PFAM: P-loop ATPase family
YP_004282187.1	COGs: COG2229 GTPase; InterPro IPR013684; KEGG: aae:aq_1844 hypothetical protein; PFAM: MIRO-like; SPTR:  uncharacterized protein; PFAM: Miro-like protein
YP_004282188.1	KEGG: bhr:BH0208 hypothetical protein; SPTR:  uncharacterized protein
YP_004282189.1	KEGG: pbe:PB001137.00.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004282190.1	COGs: COG4007 dehydrogenase related to H2-forming N5 N10-methylenetetrahydromethanopterin dehydrogenase; InterPro IPR010063: IPR004889; KEGG: mja:MJ_1338 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-like protein; PFAM: H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase; SPTR: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338; TIGRFAM: Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related; PFAM: H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase; TIGRFAM: H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein
YP_004282191.1	COGs: COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid; InterPro IPR004942; KEGG: rrs:RoseRS_3912 roadblock/LC7 family protein; PFAM: Dynein light chain-related; SPTR: Roadblock/LC7 family protein; PFAM: Roadblock/LC7 domain
YP_004282192.1	COGs: COG0502 Biotin synthase; InterPro IPR007197: IPR006638; KEGG: mmp:MMP0126 biotin synthase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthetase; PFAM: Radical SAM superfamily
YP_004282193.1	COGs: COG4019 conserved hypothetical protein; InterPro IPR009573; KEGG: mvu:Metvu_0359 hypothetical protein; PFAM: Protein of unknown function DUF1188; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1188); Protein of unknown function (DUF3236)
YP_004282194.1	COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: mru:mru_0531 NIF3 family protein; PFAM: NGG1p interacting factor 3, NIF3; SPTR: NIF3 family protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family
YP_004282195.1	COGs: COG4016 conserved hypothetical protein; InterPro IPR009625; KEGG: mvu:Metvu_0907 hypothetical protein; PFAM: Uncharacterised protein family UPF0254; SPTR: UPF0254 protein Metvu_0907; PFAM: Uncharacterised protein family (UPF0254)
YP_004282196.1	COGs: COG4015 dinucleotide-utilizing protein of the ThiF/HesA family; InterPro IPR000594; KEGG: mmx:MmarC6_1430 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: UBA/THIF-type NAD/FAD binding protein; PFAM: ThiF family
YP_004282197.1	COGs: COG4018 conserved hypothetical protein; InterPro IPR016760; KEGG: mla:Mlab_1745 hypothetical protein; PFAM: Uncharacterised conserved protein UCP019375; SPTR: Uncharacterized protein-like protein; PFAM: Fibrillarin-like archaeal protein
YP_004282198.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: pmx:PERMA_1856  carboxylesterase BioH (biotin synthesis protein BioH); SPTR:  uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_004282199.1	COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: pmx:PERMA_0187 carboxy-peptidase; PFAM: peptidase S41; PDZ/DHR/GLGF; SMART: peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxy-peptidase; TIGRFAM: peptidase S41A, C-terminal peptidase; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_004282200.1	COGs: COG3958 transketolase C-terminal subunit; InterPro IPR005475: IPR005476; KEGG: gsu:GSU2918 transketolase, C-terminal subunit; PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: transketolase, C-terminal section; PFAM: transketolase, C-terminal domain; transketolase, pyrimidine binding domain
YP_004282201.1	KEGG: lbf:LBF_2145 hypothetical protein; SPTR:  uncharacterized protein
YP_004282202.1	COGs: COG3959 transketolase N-terminal subunit; InterPro IPR005474; KEGG: clj:CLJU_c03050 transketolase subunit A; PFAM: transketolase, N-terminal; PRIAM: transketolase; SPTR: transketolase, subunit A; PFAM: transketolase, thiamine diphosphate binding domain
YP_004282203.1	COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049: IPR000362; KEGG: pca:Pcar_2418 argininosuccinate lyase; PFAM: Fumarate lyase; PRIAM: Argininosuccinate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_004282204.1	COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR005990: IPR001093: IPR000644; KEGG: ddf:DEFDS_0469 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: Cystathionine beta-synthase, core; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_004282205.1	COGs: COG1403 Restriction endonuclease; InterPro IPR002711: IPR003615; KEGG: hya:HY04AAS1_0070 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; PFAM: HNH endonuclease
YP_004282206.1	COGs: COG4047 conserved hypothetical protein; InterPro IPR015254; KEGG: tsi:TSIB_1904 N-glycosylase/DNA lyase; PFAM: N-glycosylase/DNA lyase-like, archaea; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: N-glycosylase/DNA lyase (AGOG) (8-oxoguanine DNA glycosylase); PFAM: Domain of unknown function (DUF1886)
YP_004282207.1	KEGG: mae:Maeo_0231 hypothetical protein; SPTR:  uncharacterized protein
YP_004282208.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: mfs:MFS40622_0373 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_004282209.1	KEGG: mfs:MFS40622_0374 hypothetical protein; SPTR:  uncharacterized protein
YP_004282210.1	KEGG: mfs:MFS40622_0375 queuine/other tRNA-ribosyltransferase; SPTR: Queuine/other tRNA-ribosyltransferase
YP_004282211.1	COGs: COG1189 rRNA methylase; InterPro IPR004538: IPR002942: IPR002877; KEGG: saf:SULAZ_0516 hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4; SMART: RNA-binding S4; SPTR: Hemolysin A; TIGRFAM: Haemolysin A; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein
YP_004282212.1	COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR004387: IPR008915: IPR001478; KEGG: pmx:PERMA_0140 RIP metalloprotease RseP; PFAM: peptidase M50; PDZ/DHR/GLGF; SPTR: RIP metalloprotease RseP; TIGRFAM: peptidase M50,  membrane-associated zinc metallopeptidase; PFAM: peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP
YP_004282213.1	COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372; KEGG: aae:aq_1104 hypothetical protein; PFAM: DNA polymerase III, delta; SPTR: Uncharacterized protein aq_1104
YP_004282214.1	KEGG: dhd:Dhaf_1287 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: ferredoxin-type protein NapF
YP_004282215.1	COGs: COG1238 membrane protein; InterPro IPR015414; KEGG: afl:Aflv_2761 membrane protein DegA family; PFAM: SNARE associated Golgi protein; SPTR: Membrane protein DegA family; PFAM: SNARE associated Golgi protein
YP_004282216.1	COGs: COG0496 acid phosphatase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; InterPro IPR002828; KEGG: hth:HTH_0785 stationary phase survival protein; PFAM: Survival protein SurE-like phosphatase/nucleotidase; PRIAM: 3'-nucleotidase; SPTR: 5'-nucleotidase surE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; manually curated; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_004282217.1	KEGG: rde:RD1_0125 hypothetical protein; SPTR: Gp230; PFAM: Nicotinamide mononucleotide transporter
YP_004282218.1	COGs: COG0709 Selenophosphate synthase; Contains Selenocysteine; HAMAP: Selenide, water dikinase; InterPro IPR004536: IPR000728: IPR010918; KEGG: adg:Adeg_0304 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; SPTR: Selenide, water dikinase; TIGRFAM: Selenide water dikinase; manually curated; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: selenium donor protein
YP_004282219.1	COGs: COG0621 2-methylthioadenine synthetase; HAMAP: ribosomal protein S12 methylthiotransferase RimO; InterPro IPR005839: IPR005840: IPR013848: IPR007197: IPR 006638; KEGG: pmx:PERMA_0494 hypothetical protein; PFAM: methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR:  uncharacterized protein; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family
YP_004282220.1	COGs: COG1900 conserved hypothetical protein; InterPro IPR002708; KEGG: dtu:Dtur_0732 protein of unknown function DUF39; PFAM: Protein of unknown function DUF39; SPTR:  uncharacterized protein; PFAM: Domain of unknown function DUF39
YP_004282221.1	COGs: COG0083 Homoserine kinase; HAMAP: Homoserine kinase; InterPro IPR000870: IPR006204: IPR013750; KEGG: pmx:PERMA_1085 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: Homoserine kinase; TIGRFAM: Homoserine kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase
YP_004282222.1	COGs: COG0261 ribosomal protein L21; HAMAP: ribosomal protein L21; InterPro IPR001787; KEGG: slp:Slip_0705 ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_004282223.1	COGs: COG0211 ribosomal protein L27; HAMAP: ribosomal protein L27; InterPro IPR001684; KEGG: tal:Thal_1528 ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_004282224.1	COGs: COG3174 membrane protein; KEGG: pmx:PERMA_0650 hypothetical protein; SPTR:  membrane protein; PFAM: MgtC family
YP_004282225.1	COGs: COG0169 Shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; InterPro IPR011342: IPR013708: IPR006151; KEGG: sul:SYO3AOP1_1303 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Shikimate 5-dehydrogenase; TIGRFAM: Quinate/shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase
YP_004282226.1	InterPro IPR002559; KEGG: sul:SYO3AOP1_0789 transposase IS4 family protein; PFAM: transposase, IS4-like; SPTR: transposase IS4 family protein; PFAM: transposase DDE domain
YP_004282227.1	COGs: COG3216 conserved hypothetical protein; InterPro IPR018639; KEGG: cyb:CYB_2148 hypothetical protein; PFAM: Protein of unknown function DUF2062; SPTR:  membrane protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2062)
YP_004282228.1	KEGG: hoh:Hoch_5053 hypothetical protein; SPTR:  uncharacterized protein
YP_004282229.1	COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase; InterPro IPR004500: IPR002314: IPR007214: IPR004154; KEGG: sat:SYN_00905 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; PFAM: YbaK / prolyl-tRNA synthetases associated domain; Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II