-- dump date 20140619_064903 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 573059000001 SEQ_END SEQ_END NC_017310.1 3532052 3532052 DR NC_017310.1; contig end 3532052..3532052 Desulfovibrio vulgaris RCH1 573059000002 SEQ_END SEQ_END NC_017311.1 202305 202305 DR NC_017311.1; contig end 202305..202305 Desulfovibrio vulgaris RCH1 YP_005700810.1 CDS Deval_0001 NC_017310.1 291 1079 D KEGG: dde:Dde_0031 chromosome segregation ATPase; chromosome segregation ATPase 291..1079 Desulfovibrio vulgaris RCH1 12868741 YP_005700811.1 CDS Deval_0002 NC_017310.1 1084 1503 R KEGG: dde:Dde_0030 hypothetical protein; hypothetical protein complement(1084..1503) Desulfovibrio vulgaris RCH1 12868743 YP_005700812.1 CDS Deval_0003 NC_017310.1 1580 2494 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dde:Dde_0029 chromosome segregation DNA-binding protein; SMART: ParB domain protein nuclease; parB-like partition protein 1580..2494 Desulfovibrio vulgaris RCH1 12868745 YP_005700813.1 CDS Deval_0004 NC_017310.1 2505 3530 D PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7-phosphate 1-kinase; PfkB domain-containing protein 2505..3530 Desulfovibrio vulgaris RCH1 12868747 YP_005700814.1 CDS Deval_0005 NC_017310.1 3612 3992 D PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: dsa:Desal_0011 hypothetical protein; DnaJ-like, subfamily C, containing protein 3612..3992 Desulfovibrio vulgaris RCH1 12868749 YP_005700815.1 CDS Deval_0006 NC_017310.1 4089 5612 R PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dde:Dde_0017 sun protein; Fmu (Sun) domain-containing protein complement(4089..5612) Desulfovibrio vulgaris RCH1 12868779 YP_005700816.1 CDS Deval_0007 NC_017310.1 5844 6767 R PFAM: protein of unknown function DUF116; KEGG: drt:Dret_0017 protein of unknown function DUF116; hypothetical protein complement(5844..6767) Desulfovibrio vulgaris RCH1 12867436 YP_005700817.1 CDS Deval_0008 NC_017310.1 6888 7880 R KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase complement(6888..7880) Desulfovibrio vulgaris RCH1 12867446 YP_005700818.1 CDS Deval_0009 NC_017310.1 7853 8368 R KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(7853..8368) Desulfovibrio vulgaris RCH1 12868677 YP_005700819.1 CDS Deval_0010 NC_017310.1 8671 10503 R KEGG: dde:Dde_0012 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; aspartyl-tRNA synthetase complement(8671..10503) Desulfovibrio vulgaris RCH1 12866935 YP_005700820.1 CDS Deval_0011 NC_017310.1 10522 11775 R TIGRFAM: histidyl-tRNA synthetase; KEGG: dde:Dde_0011 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase complement(10522..11775) Desulfovibrio vulgaris RCH1 12866936 YP_005700821.1 CDS Deval_0012 NC_017310.1 11896 12684 R PFAM: Methyltransferase type 11; KEGG: dde:Dde_0009 hypothetical protein; type 11 methyltransferase complement(11896..12684) Desulfovibrio vulgaris RCH1 12866937 YP_005700822.1 CDS Deval_0013 NC_017310.1 13191 15548 R TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: dsa:Desal_0813 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(13191..15548) Desulfovibrio vulgaris RCH1 12866938 YP_005700823.1 CDS Deval_0014 NC_017310.1 16085 17749 R TIGRFAM: dihydroxy-acid dehydratase; KEGG: dde:Dde_0116 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase complement(16085..17749) Desulfovibrio vulgaris RCH1 12866939 YP_005700824.1 CDS Deval_0015 NC_017310.1 17781 18656 R PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX; hypothetical protein complement(17781..18656) Desulfovibrio vulgaris RCH1 12866940 YP_005700825.1 CDS Deval_0016 NC_017310.1 18656 19372 R TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(18656..19372) Desulfovibrio vulgaris RCH1 12866941 YP_005700826.1 CDS Deval_0017 NC_017310.1 19572 21152 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: amu:Amuc_0864 sulfatase; sulfatase complement(19572..21152) Desulfovibrio vulgaris RCH1 12866942 YP_005700827.1 CDS Deval_0018 NC_017310.1 21152 21526 R PFAM: diacylglycerol kinase; KEGG: vsa:VSAL_I0531 diacylglycerol kinase; diacylglycerol kinase complement(21152..21526) Desulfovibrio vulgaris RCH1 12866943 YP_005700828.1 CDS Deval_0019 NC_017310.1 21629 22090 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dds:Ddes_0203 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(21629..22090) Desulfovibrio vulgaris RCH1 12866944 YP_005700829.1 CDS Deval_0020 NC_017310.1 22392 22622 D KEGG: bgl:bglu_2g21630 propionate catabolism operon regulatory protein; hypothetical protein 22392..22622 Desulfovibrio vulgaris RCH1 12866945 YP_005700830.1 CDS Deval_0021 NC_017310.1 22571 24835 R TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: dde:Dde_0113 ribonucleotide-diphosphate reductase subunit alpha; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase complement(22571..24835) Desulfovibrio vulgaris RCH1 12866946 YP_005700831.1 CDS Deval_0022 NC_017310.1 25444 26823 R KEGG: dde:Dde_0109 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(25444..26823) Desulfovibrio vulgaris RCH1 12866947 YP_005700832.1 CDS Deval_0023 NC_017310.1 26825 28864 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0110 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(26825..28864) Desulfovibrio vulgaris RCH1 12866948 YP_005700833.1 CDS Deval_0024 NC_017310.1 29456 29977 D KEGG: dde:Dde_0111 zinc resistance-associated protein; zinc resistance-associated protein 29456..29977 Desulfovibrio vulgaris RCH1 12866949 YP_005700834.1 CDS Deval_0025 NC_017310.1 30542 31897 R PFAM: permease; KEGG: dde:Dde_0132 permease, putative; permease complement(30542..31897) Desulfovibrio vulgaris RCH1 12866950 YP_005700835.1 CDS Deval_0026 NC_017310.1 32596 33609 R KEGG: dds:Ddes_0311 hypothetical protein; hypothetical protein complement(32596..33609) Desulfovibrio vulgaris RCH1 12866951 YP_005700836.1 CDS Deval_0027 NC_017310.1 33777 34631 R PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_0107 putative lipoprotein; peptidase M48 Ste24p complement(33777..34631) Desulfovibrio vulgaris RCH1 12866952 YP_005700837.1 CDS Deval_0028 NC_017310.1 34737 37019 D SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: dde:Dde_0106 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase I 34737..37019 Desulfovibrio vulgaris RCH1 12866953 YP_005700838.1 CDS Deval_0029 NC_017310.1 37255 38109 R KEGG: dma:DMR_35470 hypothetical protein; hypothetical protein complement(37255..38109) Desulfovibrio vulgaris RCH1 12866954 YP_005700839.1 CDS Deval_0030 NC_017310.1 38568 39911 D KEGG: dde:Dde_0104 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type I 38568..39911 Desulfovibrio vulgaris RCH1 12866955 YP_005700840.1 CDS Deval_0031 NC_017310.1 40298 40438 R hypothetical protein complement(40298..40438) Desulfovibrio vulgaris RCH1 12866956 YP_005700841.1 CDS Deval_0032 NC_017310.1 40498 41808 R PFAM: Peptidase M23; KEGG: dds:Ddes_0002 peptidase M23; peptidase M23 complement(40498..41808) Desulfovibrio vulgaris RCH1 12866957 YP_005700842.1 CDS Deval_0033 NC_017310.1 42103 43416 D KEGG: dde:Dde_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator DnaA domain-containing protein 42103..43416 Desulfovibrio vulgaris RCH1 12866958 YP_005700843.1 CDS Deval_0034 NC_017310.1 43562 44716 D SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 43562..44716 Desulfovibrio vulgaris RCH1 12866959 YP_005700844.1 CDS Deval_0035 NC_017310.1 44718 47114 D TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; KEGG: dds:Ddes_0005 DNA gyrase, B subunit; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 44718..47114 Desulfovibrio vulgaris RCH1 12866960 YP_005700845.1 CDS Deval_0036 NC_017310.1 47271 49784 D SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: dds:Ddes_0006 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 47271..49784 Desulfovibrio vulgaris RCH1 12866961 YP_005700846.1 CDS Deval_0037 NC_017310.1 49787 50572 D KEGG: dds:Ddes_0007 putative lipoprotein; putative lipoprotein 49787..50572 Desulfovibrio vulgaris RCH1 12866962 YP_005700847.1 CDS Deval_0038 NC_017310.1 50865 51470 R PFAM: UspA domain-containing protein; KEGG: dde:Dde_0098 universal stress protein; UspA domain-containing protein complement(50865..51470) Desulfovibrio vulgaris RCH1 12866963 YP_005700848.1 CDS Deval_0039 NC_017310.1 51504 52889 R KEGG: dde:Dde_0099 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; asparaginyl-tRNA synthetase complement(51504..52889) Desulfovibrio vulgaris RCH1 12866964 YP_005700849.1 CDS Deval_0040 NC_017310.1 53633 54913 R KEGG: dat:HRM2_48190 putative TRAP-type C4-dicarboxylate transport system, large permease component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(53633..54913) Desulfovibrio vulgaris RCH1 12866965 YP_005700850.1 CDS Deval_0041 NC_017310.1 54910 55476 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dal:Dalk_0472 tripartite ATP-independent periplasmic transporter DctQ component; tripartite AtP-independent periplasmic transporter subunit DctQ complement(54910..55476) Desulfovibrio vulgaris RCH1 12866966 YP_005700851.1 CDS Deval_0042 NC_017310.1 55538 56563 R KEGG: dal:Dalk_0473 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP complement(55538..56563) Desulfovibrio vulgaris RCH1 12866967 YP_005700852.1 CDS Deval_0043 NC_017310.1 57051 58253 D KEGG: dde:Dde_3779 MerR family transcriptional regulator; MerR family transcriptional regulator 57051..58253 Desulfovibrio vulgaris RCH1 12866968 YP_005700853.1 CDS Deval_0044 NC_017310.1 58414 60222 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3782 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; multi-sensor signal transduction histidine kinase 58414..60222 Desulfovibrio vulgaris RCH1 12866969 YP_005700854.1 CDS Deval_0045 NC_017310.1 60422 60640 R KEGG: dma:DMR_20740 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor IF-1 complement(60422..60640) Desulfovibrio vulgaris RCH1 12866970 YP_005700855.1 CDS Deval_0046 NC_017310.1 60756 61547 R KEGG: dde:Dde_3768 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(60756..61547) Desulfovibrio vulgaris RCH1 12866971 YP_005700856.1 CDS Deval_0047 NC_017310.1 62088 64337 D KEGG: dde:Dde_2734 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 62088..64337 Desulfovibrio vulgaris RCH1 12866973 YP_005700857.1 CDS Deval_0048 NC_017310.1 64454 65062 R PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3337 nigerythrin; rubrerythrin complement(64454..65062) Desulfovibrio vulgaris RCH1 12866974 YP_005700858.1 CDS Deval_0049 NC_017310.1 65564 66541 R KEGG: cyp:PCC8801_2037 hypothetical protein; hypothetical protein complement(65564..66541) Desulfovibrio vulgaris RCH1 12866975 YP_005700859.1 CDS Deval_0050 NC_017310.1 66809 69259 R TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; KEGG: cwo:Cwoe_0137 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; diguanylate cyclase/phosphodiesterase with extracellular sensor complement(66809..69259) Desulfovibrio vulgaris RCH1 12866976 YP_005700860.1 CDS Deval_0051 NC_017310.1 69420 69590 D KEGG: dsa:Desal_1571 hypothetical protein; hypothetical protein 69420..69590 Desulfovibrio vulgaris RCH1 12866977 YP_005700861.1 CDS Deval_0052 NC_017310.1 69666 71825 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dsa:Desal_2892 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(69666..71825) Desulfovibrio vulgaris RCH1 12866978 YP_005700862.1 CDS Deval_0053 NC_017310.1 72439 73011 D KEGG: sdn:Sden_0155 hypothetical protein; hypothetical protein 72439..73011 Desulfovibrio vulgaris RCH1 12866980 YP_005700863.1 CDS Deval_0054 NC_017310.1 73230 74654 R KEGG: dde:Dde_1483 hypothetical protein; hypothetical protein complement(73230..74654) Desulfovibrio vulgaris RCH1 12866981 YP_005700864.1 CDS Deval_0055 NC_017310.1 75184 75561 D KEGG: asa:ASA_3792 chaperone CsaA; TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain-containing protein; export-related chaperone CsaA 75184..75561 Desulfovibrio vulgaris RCH1 12866982 YP_005700865.1 CDS Deval_0056 NC_017310.1 75938 77650 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_0092 hydantoinase/oxoprolinase family protein; hydantoinase/oxoprolinase 75938..77650 Desulfovibrio vulgaris RCH1 12866983 YP_005700866.1 CDS Deval_0057 NC_017310.1 77724 78128 D KEGG: dde:Dde_0093 hypothetical protein; hypothetical protein 77724..78128 Desulfovibrio vulgaris RCH1 12866984 YP_005700867.1 CDS Deval_0058 NC_017310.1 78434 79936 R KEGG: dde:Dde_0157 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; DeoR family transcriptional regulator complement(78434..79936) Desulfovibrio vulgaris RCH1 12866985 YP_005700868.1 CDS Deval_0059 NC_017310.1 80120 81124 D PFAM: AzlC family protein; KEGG: dde:Dde_0158 AzlC family protein; AzlC family protein 80120..81124 Desulfovibrio vulgaris RCH1 12866986 YP_005700869.1 CDS Deval_0060 NC_017310.1 81114 81449 D PFAM: branched-chain amino acid transport; KEGG: lhk:LHK_03139 branched-chain amino acid transport; branched-chain amino acid transport 81114..81449 Desulfovibrio vulgaris RCH1 12866987 YP_005700870.1 CDS Deval_0061 NC_017310.1 81716 82330 D PFAM: isochorismatase hydrolase; KEGG: ppd:Ppro_2976 isochorismatase hydrolase; isochorismatase hydrolase 81716..82330 Desulfovibrio vulgaris RCH1 12866988 YP_005700871.1 CDS Deval_0062 NC_017310.1 82478 83263 D PFAM: DSBA oxidoreductase; KEGG: dde:Dde_0163 DsbA-like thioredoxin domain-containing protein; DSBA oxidoreductase 82478..83263 Desulfovibrio vulgaris RCH1 12866989 YP_005700872.1 CDS Deval_0063 NC_017310.1 83652 83825 R KEGG: dde:Dde_3664 hypothetical protein; hypothetical protein complement(83652..83825) Desulfovibrio vulgaris RCH1 12866990 YP_005700873.1 CDS Deval_0064 NC_017310.1 84239 84694 R KEGG: drt:Dret_2390 putative zinc resistance-associated protein precursor; hypothetical protein complement(84239..84694) Desulfovibrio vulgaris RCH1 12866991 YP_005700874.1 CDS Deval_0065 NC_017310.1 84877 85293 R PFAM: protein of unknown function DUF523; KEGG: dsa:Desal_0784 protein of unknown function DUF523; hypothetical protein complement(84877..85293) Desulfovibrio vulgaris RCH1 12866992 YP_005700875.1 CDS Deval_0066 NC_017310.1 85631 87481 R KEGG: dde:Dde_3661 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(85631..87481) Desulfovibrio vulgaris RCH1 12866993 YP_005700876.1 CDS Deval_0067 NC_017310.1 87855 88223 D KEGG: dsa:Desal_1072 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 87855..88223 Desulfovibrio vulgaris RCH1 12866994 YP_005700877.1 CDS Deval_0068 NC_017310.1 88406 89017 D KEGG: gym:GYMC10_2690 hypothetical protein; hypothetical protein 88406..89017 Desulfovibrio vulgaris RCH1 12866995 YP_005700878.1 CDS Deval_0069 NC_017310.1 89210 90973 R KEGG: dde:Dde_3580 peptidoglycan-binding LysM; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; lytic transglycosylase complement(89210..90973) Desulfovibrio vulgaris RCH1 12866996 YP_005700879.1 CDS Deval_0070 NC_017310.1 91116 92267 D KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; TrmH family RNA methyltransferase 91116..92267 Desulfovibrio vulgaris RCH1 12866997 YP_005700880.1 CDS Deval_0071 NC_017310.1 92507 92776 R KEGG: dde:Dde_3582 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; flagellar biosynthetic protein FliQ complement(92507..92776) Desulfovibrio vulgaris RCH1 12866998 YP_005700881.1 CDS Deval_0072 NC_017310.1 92793 93491 R manually curated; TIGRFAM: flagellar biosynthetic protein FliP; KEGG: lip:LI0639 flagellar biosynthesis protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP complement(92793..93491) Desulfovibrio vulgaris RCH1 12866999 YP_005700882.1 CDS Deval_0073 NC_017310.1 93529 94038 R TIGRFAM: flagellar biosynthetic protein FliO; KEGG: dds:Ddes_0376 flagellar biosynthesis protein FliO; flagellar biosynthetic protein FliO complement(93529..94038) Desulfovibrio vulgaris RCH1 12867000 YP_005700883.1 CDS Deval_0074 NC_017310.1 94043 94555 R KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliN complement(94043..94555) Desulfovibrio vulgaris RCH1 12867001 YP_005700884.1 CDS Deval_0075 NC_017310.1 94581 95090 R PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_3586 flagellar protein FliL; flagellar basal body-associated protein FliL complement(94581..95090) Desulfovibrio vulgaris RCH1 12867002 YP_005700885.1 CDS Deval_0076 NC_017310.1 95117 95857 R PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB; OmpA/MotB domain-containing protein complement(95117..95857) Desulfovibrio vulgaris RCH1 12867003 YP_005700886.1 CDS Deval_0077 NC_017310.1 95854 96948 R PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein; OmpA/MotB domain-containing protein complement(95854..96948) Desulfovibrio vulgaris RCH1 12867004 YP_005700887.1 CDS Deval_0078 NC_017310.1 96960 97718 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel complement(96960..97718) Desulfovibrio vulgaris RCH1 12867005 YP_005700888.1 CDS Deval_0079 NC_017310.1 97994 98725 R PFAM: alanine racemase domain protein; KEGG: dde:Dde_3590 hypothetical protein; alanine racemase complement(97994..98725) Desulfovibrio vulgaris RCH1 12867006 YP_005700889.1 CDS Deval_0080 NC_017310.1 98800 99726 R KEGG: dds:Ddes_0371 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; GTP-binding protein Era complement(98800..99726) Desulfovibrio vulgaris RCH1 12867007 YP_005700890.1 CDS Deval_0081 NC_017310.1 99994 102030 D KEGG: dds:Ddes_2081 sulphate transporter; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter 99994..102030 Desulfovibrio vulgaris RCH1 12867008 YP_005700891.1 CDS Deval_0082 NC_017310.1 102394 103719 D PFAM: dihydrouridine synthase DuS; KEGG: dde:Dde_0389 dihydrouridine synthase family protein; dihydrouridine synthase DuS 102394..103719 Desulfovibrio vulgaris RCH1 12867009 YP_005700892.1 CDS Deval_0083 NC_017310.1 103716 104588 D TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: dde:Dde_0390 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 103716..104588 Desulfovibrio vulgaris RCH1 12867010 YP_005700893.1 CDS Deval_0084 NC_017310.1 104629 105582 D KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; response regulator receiver modulated CheW protein 104629..105582 Desulfovibrio vulgaris RCH1 12867011 YP_005700894.1 CDS Deval_0085 NC_017310.1 105842 106483 D PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator; Transcriptional regulator TetR 105842..106483 Desulfovibrio vulgaris RCH1 12867012 YP_005700895.1 CDS Deval_0086 NC_017310.1 106480 107631 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tbd:Tbd_2532 secretion protein HlyD; RND family efflux transporter MFP subunit 106480..107631 Desulfovibrio vulgaris RCH1 12867013 YP_005700896.1 CDS Deval_0087 NC_017310.1 107628 111338 D PFAM: acriflavin resistance protein; KEGG: lhk:LHK_02826 probable transmembrane drug efflux protein; acriflavin resistance protein 107628..111338 Desulfovibrio vulgaris RCH1 12867014 YP_005700897.1 CDS Deval_0088 NC_017310.1 111493 112677 D KEGG: cvi:CV_0435 multidrug efflux membrane permease; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 111493..112677 Desulfovibrio vulgaris RCH1 12867015 YP_005700898.1 CDS Deval_0089 NC_017310.1 112693 115833 D KEGG: dma:DMR_28420 efflux system protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 112693..115833 Desulfovibrio vulgaris RCH1 12867016 YP_005700899.1 CDS Deval_0090 NC_017310.1 115830 117344 D KEGG: lhk:LHK_02931 OprM; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 115830..117344 Desulfovibrio vulgaris RCH1 12867017 YP_005700900.1 CDS Deval_0091 NC_017310.1 117347 117814 D KEGG: pmy:Pmen_1814 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 117347..117814 Desulfovibrio vulgaris RCH1 12867018 YP_005700901.1 CDS Deval_0092 NC_017310.1 117903 118811 D KEGG: dsa:Desal_3410 hypothetical protein; hypothetical protein 117903..118811 Desulfovibrio vulgaris RCH1 12867019 YP_005700902.1 CDS Deval_0093 NC_017310.1 119063 119860 D KEGG: dma:DMR_43820 hypothetical protein; hypothetical protein 119063..119860 Desulfovibrio vulgaris RCH1 12867020 YP_005700903.1 CDS Deval_0094 NC_017310.1 120075 120644 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: tai:Taci_1657 CMP/dCMP deaminase zinc-binding protein; CMP/dCMP deaminase zinc-binding protein 120075..120644 Desulfovibrio vulgaris RCH1 12867021 YP_005700904.1 CDS Deval_0095 NC_017310.1 120815 121123 R manually curated; KEGG: ecb:100065359 similar to ceroid-lipofuscinosis, neuronal 6, late infantile, variant; hypothetical protein complement(120815..121123) Desulfovibrio vulgaris RCH1 12867022 YP_005700905.1 CDS Deval_0096 NC_017310.1 121500 123035 R KEGG: dde:Dde_3625 hypothetical protein; hypothetical protein complement(121500..123035) Desulfovibrio vulgaris RCH1 12867023 YP_005700906.1 CDS Deval_0097 NC_017310.1 123216 127619 R KEGG: dde:Dde_3624 hypothetical protein; hypothetical protein complement(123216..127619) Desulfovibrio vulgaris RCH1 12867024 YP_005700907.1 CDS Deval_0098 NC_017310.1 127619 128974 R PFAM: metallophosphoesterase; KEGG: dde:Dde_3623 Ser/Thr protein phosphatase family protein; metallophosphoesterase complement(127619..128974) Desulfovibrio vulgaris RCH1 12867025 YP_005700908.1 CDS Deval_0099 NC_017310.1 129492 130652 D KEGG: dde:Dde_3621 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 129492..130652 Desulfovibrio vulgaris RCH1 12867026 YP_005700909.1 CDS Deval_0100 NC_017310.1 131058 131837 D KEGG: dde:Dde_3694 glucose-1-phosphate cytidylyl-transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase 131058..131837 Desulfovibrio vulgaris RCH1 12867027 YP_005700910.1 CDS Deval_0101 NC_017310.1 131847 132953 D KEGG: dds:Ddes_0876 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; CDP-glucose 4,6-dehydratase 131847..132953 Desulfovibrio vulgaris RCH1 12867028 YP_005700911.1 CDS Deval_0102 NC_017310.1 132941 133384 D KEGG: dds:Ddes_0875 polysaccharide biosynthesis domain-containing protein; polysaccharide biosynthesis domain-containing protein 132941..133384 Desulfovibrio vulgaris RCH1 12867029 YP_005700912.1 CDS Deval_0103 NC_017310.1 133718 134851 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dds:Ddes_2174 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 133718..134851 Desulfovibrio vulgaris RCH1 12867030 YP_005700913.1 CDS Deval_0104 NC_017310.1 134869 135906 D PFAM: glycosyl transferase family 2; KEGG: dds:Ddes_2171 glycosyl transferase family 2; family 2 glycosyl transferase 134869..135906 Desulfovibrio vulgaris RCH1 12867031 YP_005700914.1 CDS Deval_0105 NC_017310.1 136269 137351 D KEGG: dde:Dde_0097 hypothetical protein; hypothetical protein 136269..137351 Desulfovibrio vulgaris RCH1 12867032 YP_005700915.1 CDS Deval_0106 NC_017310.1 137398 137739 D KEGG: rce:RC1_2569 hypothetical protein; hypothetical protein 137398..137739 Desulfovibrio vulgaris RCH1 12867033 YP_005700916.1 CDS Deval_0107 NC_017310.1 138112 138915 D PFAM: zinc/iron permease; KEGG: aco:Amico_0219 zinc/iron permease; zinc/iron permease 138112..138915 Desulfovibrio vulgaris RCH1 12867034 YP_005700917.1 CDS Deval_0108 NC_017310.1 138953 140359 D KEGG: dde:Dde_0240 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; class II fumarate hydratase 138953..140359 Desulfovibrio vulgaris RCH1 12867035 YP_005700918.1 CDS Deval_0109 NC_017310.1 140512 142242 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: dde:Dde_0239 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase complement(140512..142242) Desulfovibrio vulgaris RCH1 12867036 YP_005700919.1 CDS Deval_0110 NC_017310.1 142336 143928 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0236 hypothetical protein; NAD-dependent epimerase/dehydratase complement(142336..143928) Desulfovibrio vulgaris RCH1 12867037 YP_005700920.1 CDS Deval_0111 NC_017310.1 144058 144477 D PFAM: protein of unknown function DUF309; KEGG: dma:DMR_33670 hypothetical protein; hypothetical protein 144058..144477 Desulfovibrio vulgaris RCH1 12867038 YP_005700921.1 CDS Deval_0112 NC_017310.1 144549 145601 R TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: dde:Dde_0076 translation initiation factor 2B subunit I; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family complement(144549..145601) Desulfovibrio vulgaris RCH1 12867039 YP_005700922.1 CDS Deval_0113 NC_017310.1 146118 147362 D KEGG: dde:Dde_0079 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 146118..147362 Desulfovibrio vulgaris RCH1 12867040 YP_005700923.1 CDS Deval_0114 NC_017310.1 153855 154349 D PFAM: protein of unknown function DUF997; KEGG: dde:Dde_3322 membrane protein-like; hypothetical protein 153855..154349 Desulfovibrio vulgaris RCH1 12867046 YP_005700924.1 CDS Deval_0115 NC_017310.1 154346 155833 D KEGG: dde:Dde_3321 sodium/panthothenate symporter; TIGRFAM: sodium/pantothenate symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; sodium/pantothenate symporter 154346..155833 Desulfovibrio vulgaris RCH1 12867047 YP_005700925.1 CDS Deval_0116 NC_017310.1 155889 156692 R PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0374 hypothetical protein; family 3 extracellular solute-binding protein complement(155889..156692) Desulfovibrio vulgaris RCH1 12867048 YP_005700926.1 CDS Deval_0117 NC_017310.1 157269 158240 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: nhl:Nhal_1333 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 157269..158240 Desulfovibrio vulgaris RCH1 12867049 YP_005700927.1 CDS Deval_0118 NC_017310.1 158293 159015 D KEGG: cyh:Cyan8802_0670 protein of unknown function DUF88; hypothetical protein 158293..159015 Desulfovibrio vulgaris RCH1 12867050 YP_005700928.1 CDS Deval_0119 NC_017310.1 159072 162389 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(159072..162389) Desulfovibrio vulgaris RCH1 12867051 YP_005700929.1 CDS Deval_0120 NC_017310.1 162645 165095 R KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein; PFAM: glycosyl transferase group 1; PHP domain protein; SMART: phosphoesterase PHP domain protein; group 1 glycosyl transferase complement(162645..165095) Desulfovibrio vulgaris RCH1 12867052 YP_005700930.1 CDS Deval_0121 NC_017310.1 165327 167489 D KEGG: dde:Dde_1752 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 165327..167489 Desulfovibrio vulgaris RCH1 12867053 YP_005700931.1 CDS Deval_0122 NC_017310.1 167630 168667 R PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_3673 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein complement(167630..168667) Desulfovibrio vulgaris RCH1 12867054 YP_005700932.1 CDS Deval_0123 NC_017310.1 168669 169442 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0831 spermidine/putrescine ABC transporter membrane protein; binding-protein-dependent transport system inner membrane protein complement(168669..169442) Desulfovibrio vulgaris RCH1 12867055 YP_005700933.1 CDS Deval_0124 NC_017310.1 169445 170332 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0830 ABC-type spermidine/putrescine transport system, permease component I; binding-protein-dependent transport system inner membrane protein complement(169445..170332) Desulfovibrio vulgaris RCH1 12867056 YP_005700934.1 CDS Deval_0125 NC_017310.1 170319 171425 R TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: dde:Dde_3670 putrescine/spermidine ABC transporter ATPase protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(170319..171425) Desulfovibrio vulgaris RCH1 12867057 YP_005700935.1 CDS Deval_0126 NC_017310.1 171843 173135 R KEGG: sfu:Sfum_3705 TonB protein; TIGRFAM: TonB family protein; PFAM: TonB domain; TonB family protein complement(171843..173135) Desulfovibrio vulgaris RCH1 12867058 YP_005700936.1 CDS Deval_0127 NC_017310.1 173300 175249 D PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: hch:HCH_02841 TonB-dependent receptor family protein; TonB-dependent receptor plug 173300..175249 Desulfovibrio vulgaris RCH1 12867059 YP_005700937.1 CDS Deval_0128 NC_017310.1 175360 176886 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dae:Dtox_0549 methyltransferase type 11; type 11 methyltransferase 175360..176886 Desulfovibrio vulgaris RCH1 12867060 YP_005700938.1 CDS Deval_0129 NC_017310.1 177074 178066 D PFAM: periplasmic solute binding protein; KEGG: dau:Daud_1151 periplasmic solute binding protein; periplasmic solute binding protein 177074..178066 Desulfovibrio vulgaris RCH1 12867061 YP_005700939.1 CDS Deval_0130 NC_017310.1 178063 179040 D KEGG: dau:Daud_1150 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 178063..179040 Desulfovibrio vulgaris RCH1 12867062 YP_005700940.1 CDS Deval_0131 NC_017310.1 179049 179885 D PFAM: ABC-3 protein; KEGG: dau:Daud_1149 ABC-3 protein; ABC-3 protein 179049..179885 Desulfovibrio vulgaris RCH1 12867063 YP_005700941.1 CDS Deval_0132 NC_017310.1 180129 180863 R KEGG: dde:Dde_0166 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(180129..180863) Desulfovibrio vulgaris RCH1 12867064 YP_005700942.1 CDS Deval_0133 NC_017310.1 180937 181608 R KEGG: dde:Dde_0167 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(180937..181608) Desulfovibrio vulgaris RCH1 12867065 YP_005700943.1 CDS Deval_0134 NC_017310.1 181723 182472 R KEGG: dde:Dde_0168 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein complement(181723..182472) Desulfovibrio vulgaris RCH1 12867066 YP_005700944.1 CDS Deval_0135 NC_017310.1 183534 184640 D KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 183534..184640 Desulfovibrio vulgaris RCH1 12867067 YP_005700945.1 CDS Deval_0136 NC_017310.1 184625 186055 D KEGG: dma:DMR_16180 NtrC family two-component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 184625..186055 Desulfovibrio vulgaris RCH1 12867068 YP_005700946.1 CDS Deval_0137 NC_017310.1 186189 186995 D KEGG: dde:Dde_0178 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 186189..186995 Desulfovibrio vulgaris RCH1 12867069 YP_005700947.1 CDS Deval_0138 NC_017310.1 186992 188428 D PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dde:Dde_0179 deoxyribodipyrimidine photo-lyase type II; DNA photolyase FAD-binding protein 186992..188428 Desulfovibrio vulgaris RCH1 12867070 YP_005700948.1 CDS Deval_0139 NC_017310.1 189070 189450 D KEGG: dde:Dde_3567 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 189070..189450 Desulfovibrio vulgaris RCH1 12867071 YP_005700949.1 CDS Deval_0140 NC_017310.1 189447 190328 D TIGRFAM: ATP phosphoribosyltransferase; KEGG: dde:Dde_3566 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase 189447..190328 Desulfovibrio vulgaris RCH1 12867072 YP_005700950.1 CDS Deval_0141 NC_017310.1 190428 191333 D KEGG: dde:Dde_3564 shikimate dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; shikimate 5-dehydrogenase 190428..191333 Desulfovibrio vulgaris RCH1 12867073 YP_005700951.1 CDS Deval_0142 NC_017310.1 191672 192748 D PFAM: polysaccharide deacetylase; KEGG: gsu:GSU0659 polysaccharide deacetylase domain-containing protein; polysaccharide deacetylase 191672..192748 Desulfovibrio vulgaris RCH1 12867074 YP_005700952.1 CDS Deval_0143 NC_017310.1 192796 193713 R PFAM: glycosyl transferase family 2; KEGG: dsa:Desal_0966 glycosyl transferase family 2; family 2 glycosyl transferase complement(192796..193713) Desulfovibrio vulgaris RCH1 12867075 YP_005700953.1 CDS Deval_0144 NC_017310.1 194000 195364 R KEGG: tye:THEYE_A0124 acetoacetate metabolism regulatory protein AtoC; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(194000..195364) Desulfovibrio vulgaris RCH1 12867076 YP_005700954.1 CDS Deval_0145 NC_017310.1 195361 197025 R KEGG: glo:Glov_1152 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase complement(195361..197025) Desulfovibrio vulgaris RCH1 12867077 YP_005700955.1 CDS Deval_0146 NC_017310.1 197022 197960 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: glo:Glov_1153 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(197022..197960) Desulfovibrio vulgaris RCH1 12867078 YP_005700956.1 CDS Deval_0147 NC_017310.1 198010 198453 R KEGG: drm:Dred_1860 UspA domain-containing protein; hypothetical protein complement(198010..198453) Desulfovibrio vulgaris RCH1 12867079 YP_005700957.1 CDS Deval_0148 NC_017310.1 198535 198633 R hypothetical protein complement(198535..198633) Desulfovibrio vulgaris RCH1 12867080 YP_005700958.1 CDS Deval_0149 NC_017310.1 198646 199728 R PFAM: Uncharacterised protein family UPF0324; KEGG: drm:Dred_1861 hypothetical protein; hypothetical protein complement(198646..199728) Desulfovibrio vulgaris RCH1 12867081 YP_005700959.1 CDS Deval_0150 NC_017310.1 199795 199935 R hypothetical protein complement(199795..199935) Desulfovibrio vulgaris RCH1 12867082 YP_005700960.1 CDS Deval_0151 NC_017310.1 200166 201299 D PFAM: secretion protein HlyD family protein; KEGG: vap:Vapar_1741 secretion protein HlyD family protein; secretion protein HlyD family protein 200166..201299 Desulfovibrio vulgaris RCH1 12867083 YP_005700961.1 CDS Deval_0152 NC_017310.1 201296 204811 D KEGG: slt:Slit_2512 ABC transporter related protein; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; ABC transporter 201296..204811 Desulfovibrio vulgaris RCH1 12867084 YP_005700962.1 CDS Deval_0153 NC_017310.1 204815 205927 D PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter; ABC transporter 204815..205927 Desulfovibrio vulgaris RCH1 12867085 YP_005700963.1 CDS Deval_0154 NC_017310.1 206143 207201 R PFAM: protein of unknown function UPF0118; KEGG: lip:LI0472 permease; hypothetical protein complement(206143..207201) Desulfovibrio vulgaris RCH1 12867086 YP_005700964.1 CDS Deval_0155 NC_017310.1 207446 208804 D TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; KEGG: putative PAS/PAC sensor protein; SMART: metal-dependent phosphohydrolase HD region; PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 207446..208804 Desulfovibrio vulgaris RCH1 12867087 YP_005700965.1 CDS Deval_0156 NC_017310.1 208983 209645 R KEGG: hmo:HM1_1613 phosphoglycolate phosphatase, putative; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase complement(208983..209645) Desulfovibrio vulgaris RCH1 12867088 YP_005700966.1 CDS Deval_0157 NC_017310.1 210065 211312 D PFAM: protein of unknown function DUF81; KEGG: dma:DMR_16160 hypothetical membrane protein; hypothetical protein 210065..211312 Desulfovibrio vulgaris RCH1 12867089 YP_005700967.1 CDS Deval_0158 NC_017310.1 211314 212036 D KEGG: sfu:Sfum_0645 hypothetical protein; hypothetical protein 211314..212036 Desulfovibrio vulgaris RCH1 12867090 YP_005700968.1 CDS Deval_0159 NC_017310.1 212397 213434 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3612 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(212397..213434) Desulfovibrio vulgaris RCH1 12867091 YP_005700969.1 CDS Deval_0160 NC_017310.1 213515 214426 R PFAM: PP-loop domain protein; KEGG: dds:Ddes_2277 PP-loop domain protein; PP-loop domain-containing protein complement(213515..214426) Desulfovibrio vulgaris RCH1 12867092 YP_005700970.1 CDS Deval_0161 NC_017310.1 214591 214809 R KEGG: dds:Ddes_0034 hypothetical protein; hypothetical protein complement(214591..214809) Desulfovibrio vulgaris RCH1 12867093 YP_005700971.1 CDS Deval_0162 NC_017310.1 214863 214988 R hypothetical protein complement(214863..214988) Desulfovibrio vulgaris RCH1 12867094 YP_005700972.1 CDS Deval_0163 NC_017310.1 215039 215419 D KEGG: dde:Dde_3609 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 215039..215419 Desulfovibrio vulgaris RCH1 12867095 YP_005700973.1 CDS Deval_0164 NC_017310.1 215725 217437 D KEGG: dol:Dole_1356 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 215725..217437 Desulfovibrio vulgaris RCH1 12867096 YP_005700974.1 CDS Deval_0165 NC_017310.1 217545 217958 D KEGG: dal:Dalk_2251 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 217545..217958 Desulfovibrio vulgaris RCH1 12867097 YP_005700975.1 CDS Deval_0166 NC_017310.1 218288 218962 D PFAM: peptidase M50; KEGG: dde:Dde_3608 M50 family peptidase; peptidase M50 218288..218962 Desulfovibrio vulgaris RCH1 12867098 YP_005700976.1 CDS Deval_0167 NC_017310.1 218991 219980 D TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: dde:Dde_3607 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 218991..219980 Desulfovibrio vulgaris RCH1 12867099 YP_005700977.1 CDS Deval_0168 NC_017310.1 219992 220768 D PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3606 hypothetical protein; hypothetical protein 219992..220768 Desulfovibrio vulgaris RCH1 12867100 YP_005700978.1 CDS Deval_0169 NC_017310.1 220994 221596 D KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; rfaE bifunctional protein 220994..221596 Desulfovibrio vulgaris RCH1 12867101 YP_005700979.1 CDS Deval_0170 NC_017310.1 221982 222389 R KEGG: sfu:Sfum_0648 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(221982..222389) Desulfovibrio vulgaris RCH1 12867102 YP_005700980.1 CDS Deval_0171 NC_017310.1 222533 223342 R KEGG: dds:Ddes_1638 hypothetical protein; hypothetical protein complement(222533..223342) Desulfovibrio vulgaris RCH1 12867103 YP_005700981.1 CDS Deval_0172 NC_017310.1 223339 223599 R KEGG: dma:DMR_42260 hypothetical protein; hypothetical protein complement(223339..223599) Desulfovibrio vulgaris RCH1 12867104 YP_005700982.1 CDS Deval_0173 NC_017310.1 223672 224283 R KEGG: sfu:Sfum_0627 putative lipoprotein; putative lipoprotein complement(223672..224283) Desulfovibrio vulgaris RCH1 12867105 YP_005700983.1 CDS Deval_0174 NC_017310.1 224306 225358 R PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 hypothetical protein; hypothetical protein complement(224306..225358) Desulfovibrio vulgaris RCH1 12867106 YP_005700984.1 CDS Deval_0175 NC_017310.1 225380 225676 R KEGG: sfu:Sfum_0625 hypothetical protein; hypothetical protein complement(225380..225676) Desulfovibrio vulgaris RCH1 12867107 YP_005700985.1 CDS Deval_0176 NC_017310.1 225996 228869 D KEGG: dds:Ddes_1643 sigma 54 interacting domain protein; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; sigma-54 interacting domain-containing protein 225996..228869 Desulfovibrio vulgaris RCH1 12867108 YP_005700986.1 CDS Deval_0177 NC_017310.1 228939 231500 D KEGG: dds:Ddes_1644 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; pyruvate, water dikinase 228939..231500 Desulfovibrio vulgaris RCH1 12867109 YP_005700987.1 CDS Deval_0178 NC_017310.1 231957 232340 R KEGG: dde:Dde_3573 hypothetical protein; hypothetical protein complement(231957..232340) Desulfovibrio vulgaris RCH1 12867111 YP_005700988.1 CDS Deval_0179 NC_017310.1 232808 234196 D PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein; type I phosphodiesterase/nucleotide pyrophosphatase 232808..234196 Desulfovibrio vulgaris RCH1 12867112 YP_005700989.1 CDS Deval_0180 NC_017310.1 234193 236352 D PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 234193..236352 Desulfovibrio vulgaris RCH1 12867113 YP_005700990.1 CDS Deval_0181 NC_017310.1 236349 237320 D TIGRFAM: thiamine-monophosphate kinase; KEGG: dsa:Desal_2336 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 236349..237320 Desulfovibrio vulgaris RCH1 12867114 YP_005700991.1 CDS Deval_0182 NC_017310.1 237341 238339 D PFAM: class II aldolase/adducin family protein; Uncharacterised protein family UPF0066; KEGG: dde:Dde_3569 hypothetical protein; class II aldolase/adducin family protein 237341..238339 Desulfovibrio vulgaris RCH1 12867115 YP_005700992.1 CDS Deval_0183 NC_017310.1 238553 239074 R PFAM: thioesterase superfamily protein; KEGG: dba:Dbac_1797 thioesterase superfamily protein; thioesterase superfamily protein complement(238553..239074) Desulfovibrio vulgaris RCH1 12867116 YP_005700993.1 CDS Deval_0184 NC_017310.1 239100 240095 R SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: dde:Dde_0335 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; KpsF/GutQ family protein complement(239100..240095) Desulfovibrio vulgaris RCH1 12867117 YP_005700994.1 CDS Deval_0185 NC_017310.1 240092 240361 R KEGG: swi:Swit_2951 acyltransferase 3; hypothetical protein complement(240092..240361) Desulfovibrio vulgaris RCH1 12867118 YP_005700995.1 CDS Deval_0186 NC_017310.1 240398 241786 R KEGG: dde:Dde_0334 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; amidophosphoribosyltransferase complement(240398..241786) Desulfovibrio vulgaris RCH1 12867119 YP_005700996.1 CDS Deval_0187 NC_017310.1 241814 245047 R KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; carbamoyl-phosphate synthase large subunit complement(241814..245047) Desulfovibrio vulgaris RCH1 12867120 YP_005700997.1 CDS Deval_0188 NC_017310.1 245486 246046 D KEGG: dma:DMR_44310 hypothetical protein; manually curated; PFAM: Dihaem cytochrome c; Diheme cytochrome c 245486..246046 Desulfovibrio vulgaris RCH1 12867121 YP_005700998.1 CDS Deval_0189 NC_017310.1 246107 247018 D KEGG: drt:Dret_1021 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 246107..247018 Desulfovibrio vulgaris RCH1 12867122 YP_005700999.1 CDS Deval_0190 NC_017310.1 247303 248316 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_0271 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(247303..248316) Desulfovibrio vulgaris RCH1 12867123 YP_005701000.1 CDS Deval_0191 NC_017310.1 248327 249313 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_0272 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(248327..249313) Desulfovibrio vulgaris RCH1 12867124 YP_005701001.1 CDS Deval_0192 NC_017310.1 249316 250236 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(249316..250236) Desulfovibrio vulgaris RCH1 12867125 YP_005701002.1 CDS Deval_0193 NC_017310.1 250238 251215 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(250238..251215) Desulfovibrio vulgaris RCH1 12867126 YP_005701003.1 CDS Deval_0194 NC_017310.1 251385 252947 R PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein; family 5 extracellular solute-binding protein complement(251385..252947) Desulfovibrio vulgaris RCH1 12867127 YP_005701004.1 CDS Deval_0195 NC_017310.1 253381 255450 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: dsa:Desal_0932 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 253381..255450 Desulfovibrio vulgaris RCH1 12867128 YP_005701005.1 CDS Deval_0196 NC_017310.1 255679 256860 R PFAM: aminotransferase class I and II; KEGG: pde:Pden_0648 aminotransferase, class I and II; class I and II aminotransferase complement(255679..256860) Desulfovibrio vulgaris RCH1 12867129 YP_005701006.1 CDS Deval_0197 NC_017310.1 257438 258439 R KEGG: tye:THEYE_A1127 anaerobic dimethyl sulfoxide reductase chain B; hypothetical protein complement(257438..258439) Desulfovibrio vulgaris RCH1 12867130 YP_005701007.1 CDS Deval_0198 NC_017310.1 258449 260545 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dba:Dbac_2860 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(258449..260545) Desulfovibrio vulgaris RCH1 12867131 YP_005701008.1 CDS Deval_0199 NC_017310.1 261212 262843 R PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dba:Dbac_1566 formylmethanofuran dehydrogenase subunit E region; formylmethanofuran dehydrogenase subunit E complement(261212..262843) Desulfovibrio vulgaris RCH1 12867132 YP_005701009.1 CDS Deval_0200 NC_017310.1 263099 263998 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfu:Sfum_0868 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(263099..263998) Desulfovibrio vulgaris RCH1 12867133 YP_005701010.1 CDS Deval_0201 NC_017310.1 264148 264957 R KEGG: dds:Ddes_0168 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein complement(264148..264957) Desulfovibrio vulgaris RCH1 12867134 YP_005701011.1 CDS Deval_0202 NC_017310.1 265162 266559 D PFAM: TOBE domain-containing protein; integrase family protein; KEGG: dba:Dbac_1580 TOBE domain protein; TOBE domain-containing protein 265162..266559 Desulfovibrio vulgaris RCH1 12867135 YP_005701012.1 CDS Deval_0203 NC_017310.1 266546 267307 R KEGG: sfu:Sfum_3696 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(266546..267307) Desulfovibrio vulgaris RCH1 12867136 YP_005701013.1 CDS Deval_0204 NC_017310.1 267304 268005 R KEGG: dds:Ddes_0169 molybdate ABC transporter, inner membrane subunit; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit complement(267304..268005) Desulfovibrio vulgaris RCH1 12867137 YP_005701014.1 CDS Deval_0205 NC_017310.1 268370 269293 R PFAM: Radical SAM domain protein; KEGG: dsa:Desal_1058 radical SAM domain protein; radical SAM protein complement(268370..269293) Desulfovibrio vulgaris RCH1 12867138 YP_005701015.1 CDS Deval_0206 NC_017310.1 269461 271230 R KEGG: dma:DMR_12590 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer complement(269461..271230) Desulfovibrio vulgaris RCH1 12867139 YP_005701016.1 CDS Deval_0207 NC_017310.1 271975 272754 D PFAM: protein of unknown function DUF169; KEGG: drt:Dret_2437 protein of unknown function DUF169; hypothetical protein 271975..272754 Desulfovibrio vulgaris RCH1 12867140 YP_005701017.1 CDS Deval_0208 NC_017310.1 273176 274303 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dhd:Dhaf_0017 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase complement(273176..274303) Desulfovibrio vulgaris RCH1 12867141 YP_005701018.1 CDS Deval_0209 NC_017310.1 274477 274755 R KEGG: bvi:Bcep1808_6854 hypothetical protein; hypothetical protein complement(274477..274755) Desulfovibrio vulgaris RCH1 12867142 YP_005701019.1 CDS Deval_0210 NC_017310.1 275231 276505 R TIGRFAM: seryl-tRNA synthetase; KEGG: dde:Dde_0196 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase complement(275231..276505) Desulfovibrio vulgaris RCH1 12867144 YP_005701020.1 CDS Deval_0211 NC_017310.1 276610 276999 R KEGG: dde:Dde_0197 hypothetical protein; hypothetical protein complement(276610..276999) Desulfovibrio vulgaris RCH1 12867145 YP_005701021.1 CDS Deval_0212 NC_017310.1 277535 277942 R PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0203 hypothetical protein; type IV pilus assembly PilZ complement(277535..277942) Desulfovibrio vulgaris RCH1 12867146 YP_005701022.1 CDS Deval_0213 NC_017310.1 278118 278495 D PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 278118..278495 Desulfovibrio vulgaris RCH1 12867147 YP_005701023.1 CDS Deval_0214 NC_017310.1 278508 278996 D PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 SecC motif-containing protein; SEC-C motif domain-containing protein 278508..278996 Desulfovibrio vulgaris RCH1 12867148 YP_005701024.1 CDS Deval_0215 NC_017310.1 279326 279979 D KEGG: dde:Dde_0206 hypothetical protein; hypothetical protein 279326..279979 Desulfovibrio vulgaris RCH1 12867149 YP_005701025.1 CDS Deval_0216 NC_017310.1 280009 280677 D KEGG: sat:SYN_02957 hypothetical protein; hypothetical protein 280009..280677 Desulfovibrio vulgaris RCH1 12867150 YP_005701026.1 CDS Deval_0217 NC_017310.1 280737 281426 R KEGG: dma:DMR_15800 putative sensor histidine kinase; hypothetical protein complement(280737..281426) Desulfovibrio vulgaris RCH1 12867151 YP_005701027.1 CDS Deval_0218 NC_017310.1 281624 282733 R KEGG: dma:DMR_38730 putative phosphatase; PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; dual specificity protein phosphatase complement(281624..282733) Desulfovibrio vulgaris RCH1 12867152 YP_005701028.1 CDS Deval_0219 NC_017310.1 282730 282912 R KEGG: acetylornithine and succinylornithine aminotransferase; hypothetical protein complement(282730..282912) Desulfovibrio vulgaris RCH1 12867153 YP_005701029.1 CDS Deval_0220 NC_017310.1 282912 285491 R PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase; pyruvate phosphate dikinase PEP/pyruvate-binding protein complement(282912..285491) Desulfovibrio vulgaris RCH1 12867154 YP_005701030.1 CDS Deval_0221 NC_017310.1 285509 285868 R KEGG: dde:Dde_0603 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(285509..285868) Desulfovibrio vulgaris RCH1 12867155 YP_005701031.1 CDS Deval_0222 NC_017310.1 285878 287986 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(285878..287986) Desulfovibrio vulgaris RCH1 12867156 YP_005701032.1 CDS Deval_0223 NC_017310.1 287989 288951 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(287989..288951) Desulfovibrio vulgaris RCH1 12867157 YP_005701033.1 CDS Deval_0224 NC_017310.1 289268 289855 R KEGG: dds:Ddes_1653 hypothetical protein; hypothetical protein complement(289268..289855) Desulfovibrio vulgaris RCH1 12867158 YP_005701034.1 CDS Deval_0225 NC_017310.1 289932 291077 R PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_03470 hypothetical protein; hypothetical protein complement(289932..291077) Desulfovibrio vulgaris RCH1 12867159 YP_005701035.1 CDS Deval_0226 NC_017310.1 291587 294412 R KEGG: dde:Dde_3604 oxidoreductase; PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase complement(291587..294412) Desulfovibrio vulgaris RCH1 12867160 YP_005701036.1 CDS Deval_0227 NC_017310.1 294922 295476 D KEGG: rha:RHA1_ro02179 hypothetical protein; hypothetical protein 294922..295476 Desulfovibrio vulgaris RCH1 12867161 YP_005701037.1 CDS Deval_0228 NC_017310.1 295586 298951 R KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; Protein of unknown function DUF1998; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase complement(295586..298951) Desulfovibrio vulgaris RCH1 12867162 YP_005701038.1 CDS Deval_0229 NC_017310.1 305388 305852 D PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_3024 acetyltransferase; N-acetyltransferase GCN5 305388..305852 Desulfovibrio vulgaris RCH1 12867168 YP_005701039.1 CDS Deval_0230 NC_017310.1 306013 307986 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; multi-sensor signal transduction histidine kinase complement(306013..307986) Desulfovibrio vulgaris RCH1 12867169 YP_005701040.1 CDS Deval_0231 NC_017310.1 308247 308636 R KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(308247..308636) Desulfovibrio vulgaris RCH1 12867170 YP_005701041.1 CDS Deval_0232 NC_017310.1 308654 309055 R KEGG: dde:Dde_3713 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(308654..309055) Desulfovibrio vulgaris RCH1 12867171 YP_005701042.1 CDS Deval_0233 NC_017310.1 309075 310001 R PFAM: UspA domain-containing protein; KEGG: dde:Dde_3712 universal stress protein; UspA domain-containing protein complement(309075..310001) Desulfovibrio vulgaris RCH1 12867172 YP_005701043.1 CDS Deval_0234 NC_017310.1 310005 310559 R KEGG: dde:Dde_3711 hypothetical protein; hypothetical protein complement(310005..310559) Desulfovibrio vulgaris RCH1 12867173 YP_005701044.1 CDS Deval_0235 NC_017310.1 310581 310961 R KEGG: dde:Dde_3710 acidic cytochrome c3; acidic cytochrome c3 complement(310581..310961) Desulfovibrio vulgaris RCH1 12867174 YP_005701045.1 CDS Deval_0236 NC_017310.1 310987 312306 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin, 4Fe-4S, putative; hypothetical protein complement(310987..312306) Desulfovibrio vulgaris RCH1 12867175 YP_005701046.1 CDS Deval_0237 NC_017310.1 312326 312985 R KEGG: dde:Dde_3708 hypothetical protein; hypothetical protein complement(312326..312985) Desulfovibrio vulgaris RCH1 12867176 YP_005701047.1 CDS Deval_0238 NC_017310.1 312994 314250 R KEGG: dde:Dde_3707 hypothetical protein; hypothetical protein complement(312994..314250) Desulfovibrio vulgaris RCH1 12867177 YP_005701048.1 CDS Deval_0239 NC_017310.1 314792 315289 D KEGG: dde:Dde_3719 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator 314792..315289 Desulfovibrio vulgaris RCH1 12867178 YP_005701049.1 CDS Deval_0240 NC_017310.1 315529 317799 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 315529..317799 Desulfovibrio vulgaris RCH1 12867179 YP_005701050.1 CDS Deval_0241 NC_017310.1 317796 319286 D KEGG: dde:Dde_3717 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; response regulator receiver sensor signal transduction histidine kinase 317796..319286 Desulfovibrio vulgaris RCH1 12867180 YP_005701051.1 CDS Deval_0242 NC_017310.1 319811 321232 D KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 319811..321232 Desulfovibrio vulgaris RCH1 12867181 YP_005701052.1 CDS Deval_0243 NC_017310.1 321306 321500 R KEGG: rno:310460 Src homology 3 domain-containing guanine nucleotide exchange factor; guanine nucleotide exchange factor domain-containing protein complement(321306..321500) Desulfovibrio vulgaris RCH1 12867182 YP_005701053.1 CDS Deval_0244 NC_017310.1 321544 321915 R KEGG: dde:Dde_0268 hypothetical protein; hypothetical protein complement(321544..321915) Desulfovibrio vulgaris RCH1 12867183 YP_005701054.1 CDS Deval_0245 NC_017310.1 322210 322905 R PFAM: polysaccharide deacetylase; KEGG: dds:Ddes_0123 polysaccharide deacetylase; polysaccharide deacetylase complement(322210..322905) Desulfovibrio vulgaris RCH1 12867184 YP_005701055.1 CDS Deval_0246 NC_017310.1 323970 324368 R PFAM: protein of unknown function DUF302; KEGG: cai:Caci_8650 protein of unknown function DUF302; hypothetical protein complement(323970..324368) Desulfovibrio vulgaris RCH1 12867188 YP_005701056.1 CDS Deval_0247 NC_017310.1 324513 324746 D KEGG: dsa:Desal_3579 hypothetical protein; hypothetical protein 324513..324746 Desulfovibrio vulgaris RCH1 12867189 YP_005701057.1 CDS Deval_0248 NC_017310.1 324923 325903 D KEGG: cts:Ctha_2308 transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 324923..325903 Desulfovibrio vulgaris RCH1 12867190 YP_005701058.1 CDS Deval_0249 NC_017310.1 326197 326619 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_3083 glyoxalase family protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(326197..326619) Desulfovibrio vulgaris RCH1 12867191 YP_005701059.1 CDS Deval_0250 NC_017310.1 326944 328650 D KEGG: dde:Dde_2506 sulfate permease; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter 326944..328650 Desulfovibrio vulgaris RCH1 12867192 YP_005701060.1 CDS Deval_0251 NC_017310.1 328963 330102 R PFAM: glycosyl transferase group 1; KEGG: azl:AZL_c02670 glycosyltransferase group 1 family protein; group 1 glycosyl transferase complement(328963..330102) Desulfovibrio vulgaris RCH1 12867193 YP_005701061.1 CDS Deval_0252 NC_017310.1 330207 331640 R TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; KEGG: lip:LI0512 sugar transferases involved in lipopolysaccharide synthesis; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(330207..331640) Desulfovibrio vulgaris RCH1 12867194 YP_005701062.1 CDS Deval_0253 NC_017310.1 331880 333058 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; helix-hairpin-helix motif; KEGG: dde:Dde_0212 A/G-specific DNA-adenine glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase complement(331880..333058) Desulfovibrio vulgaris RCH1 12867195 YP_005701063.1 CDS Deval_0254 NC_017310.1 333336 335075 R KEGG: dde:Dde_0210 AhpF family protein/thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(333336..335075) Desulfovibrio vulgaris RCH1 12867196 YP_005701064.1 CDS Deval_0255 NC_017310.1 335113 335325 D KEGG: dmo:Dmoj_GI11326 GI11326 gene product from transcript GI11326-RA; hypothetical protein 335113..335325 Desulfovibrio vulgaris RCH1 12867197 YP_005701065.1 CDS Deval_0256 NC_017310.1 335337 335843 D KEGG: dde:Dde_0209 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; Peptidylprolyl isomerase 335337..335843 Desulfovibrio vulgaris RCH1 12867198 YP_005701066.1 CDS Deval_0257 NC_017310.1 336031 336672 D KEGG: dde:Dde_0332 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 336031..336672 Desulfovibrio vulgaris RCH1 12867199 YP_005701067.1 CDS Deval_0258 NC_017310.1 336662 337441 D KEGG: dde:Dde_0331 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; Imidazole glycerol phosphate synthase cyclase subunit 336662..337441 Desulfovibrio vulgaris RCH1 12867200 YP_005701068.1 CDS Deval_0259 NC_017310.1 337524 338294 D PFAM: Methyltransferase type 11; KEGG: bur:Bcep18194_A4893 hypothetical protein; type 11 methyltransferase 337524..338294 Desulfovibrio vulgaris RCH1 12867201 YP_005701069.1 CDS Deval_0260 NC_017310.1 338517 339143 R KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC; molybdenum cofactor biosynthesis protein C complement(338517..339143) Desulfovibrio vulgaris RCH1 12867202 YP_005701070.1 CDS Deval_0261 NC_017310.1 339159 339767 R KEGG: shw:Sputw3181_2461 putative lipoprotein; hypothetical protein complement(339159..339767) Desulfovibrio vulgaris RCH1 12867203 YP_005701071.1 CDS Deval_0262 NC_017310.1 339792 340856 R KEGG: dba:Dbac_0792 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(339792..340856) Desulfovibrio vulgaris RCH1 12867204 YP_005701072.1 CDS Deval_0263 NC_017310.1 340841 341947 R PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein; aminoglycoside phosphotransferase complement(340841..341947) Desulfovibrio vulgaris RCH1 12867205 YP_005701073.1 CDS Deval_0264 NC_017310.1 342180 342674 D manually curated; KEGG: dal:Dalk_1586 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 342180..342674 Desulfovibrio vulgaris RCH1 12867206 YP_005701074.1 CDS Deval_0265 NC_017310.1 343063 344892 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 343063..344892 Desulfovibrio vulgaris RCH1 12867207 YP_005701075.1 CDS Deval_0266 NC_017310.1 345049 346398 D PFAM: amine oxidase; KEGG: dde:Dde_0216 UDP-galactopyranose mutase; amine oxidase 345049..346398 Desulfovibrio vulgaris RCH1 12867208 YP_005701076.1 CDS Deval_0267 NC_017310.1 346497 347567 D PFAM: peptidase M24; creatinase; KEGG: dde:Dde_0217 M24 family peptidase; peptidase M24 346497..347567 Desulfovibrio vulgaris RCH1 12867209 YP_005701077.1 CDS Deval_0268 NC_017310.1 348079 348402 D manually curated; KEGG: dde:Dde_0181 hypothetical protein; hypothetical protein 348079..348402 Desulfovibrio vulgaris RCH1 12867210 YP_005701078.1 CDS Deval_0269 NC_017310.1 349013 349798 D KEGG: dde:Dde_0372 hypothetical protein; hypothetical protein 349013..349798 Desulfovibrio vulgaris RCH1 12867211 YP_005701079.1 CDS Deval_0270 NC_017310.1 349871 350029 R PFAM: protein of unknown function DUF1508; KEGG: cbl:CLK_1115 hypothetical protein; hypothetical protein complement(349871..350029) Desulfovibrio vulgaris RCH1 12867212 YP_005701080.1 CDS Deval_0271 NC_017310.1 350208 352253 R KEGG: dma:DMR_44720 anaerobic ribonucleoside-triphosphate reductase class III; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase complement(350208..352253) Desulfovibrio vulgaris RCH1 12867213 YP_005701081.1 CDS Deval_0272 NC_017310.1 352135 352872 R manually curated; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(352135..352872) Desulfovibrio vulgaris RCH1 12867214 YP_005701082.1 CDS Deval_0273 NC_017310.1 353407 353874 R PFAM: CheC domain protein; KEGG: dde:Dde_0281 chemotaxis protein CheX, putative; chemotaxis protein CheC complement(353407..353874) Desulfovibrio vulgaris RCH1 12867215 YP_005701083.1 CDS Deval_0274 NC_017310.1 354222 354539 R KEGG: dde:Dde_0282 TPR repeat-containing protein; hypothetical protein complement(354222..354539) Desulfovibrio vulgaris RCH1 12867216 YP_005701084.1 CDS Deval_0275 NC_017310.1 354570 354851 R KEGG: dde:Dde_0283 hypothetical protein; hypothetical protein complement(354570..354851) Desulfovibrio vulgaris RCH1 12867217 YP_005701085.1 CDS Deval_0276 NC_017310.1 354981 355175 R KEGG: dde:Dde_0286 ferredoxin II; ferredoxin II complement(354981..355175) Desulfovibrio vulgaris RCH1 12867218 YP_005701086.1 CDS Deval_0277 NC_017310.1 355269 355886 D KEGG: lip:LI0584 hypothetical protein; hypothetical protein 355269..355886 Desulfovibrio vulgaris RCH1 12867219 YP_005701087.1 CDS Deval_0278 NC_017310.1 356007 357503 D KEGG: dde:Dde_0298 flagella basal body rod domain-containing protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-basal body protein 356007..357503 Desulfovibrio vulgaris RCH1 12867220 YP_005701088.1 CDS Deval_0279 NC_017310.1 357895 358329 R PFAM: transmembrane pair domain-containing protein; KEGG: dde:Dde_0348 hypothetical protein; transmembrane pair domain-containing protein complement(357895..358329) Desulfovibrio vulgaris RCH1 12867221 YP_005701089.1 CDS Deval_0280 NC_017310.1 358422 359342 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dde:Dde_0349 LysR family transcriptional regulator; LysR family transcriptional regulator 358422..359342 Desulfovibrio vulgaris RCH1 12867222 YP_005701090.1 CDS Deval_0281 NC_017310.1 359478 360791 R TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: dde:Dde_0350 ATPase FliI/YscN; SMART: AAA ATPase; FliI/YscN family ATPase complement(359478..360791) Desulfovibrio vulgaris RCH1 12867223 YP_005701091.1 CDS Deval_0282 NC_017310.1 360788 361540 R PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: dde:Dde_0351 flagellar assembly protein FliH, putative; flagellar assembly protein FliH/type III secretion system HrpE complement(360788..361540) Desulfovibrio vulgaris RCH1 12867224 YP_005701092.1 CDS Deval_0283 NC_017310.1 361527 362543 R KEGG: dde:Dde_0352 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region; flagellar motor switch protein FliG complement(361527..362543) Desulfovibrio vulgaris RCH1 12867225 YP_005701093.1 CDS Deval_0284 NC_017310.1 362512 364128 R KEGG: dde:Dde_0353 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; flagellar M-ring protein FliF complement(362512..364128) Desulfovibrio vulgaris RCH1 12867226 YP_005701094.1 CDS Deval_0285 NC_017310.1 364180 364515 R KEGG: dde:Dde_0354 flagellar hook-basal body complex protein (FliE); TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE complement(364180..364515) Desulfovibrio vulgaris RCH1 12867227 YP_005701095.1 CDS Deval_0286 NC_017310.1 364530 364967 R KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgC complement(364530..364967) Desulfovibrio vulgaris RCH1 12867228 YP_005701096.1 CDS Deval_0287 NC_017310.1 364967 365377 R KEGG: lip:LI0860 flagellar basal body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; flagellar basal-body rod protein FlgB complement(364967..365377) Desulfovibrio vulgaris RCH1 12867229 YP_005701097.1 CDS Deval_0288 NC_017310.1 366016 366579 D KEGG: dde:Dde_0357 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 366016..366579 Desulfovibrio vulgaris RCH1 12867230 YP_005701098.1 CDS Deval_0289 NC_017310.1 367051 368076 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_0109 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(367051..368076) Desulfovibrio vulgaris RCH1 12867231 YP_005701099.1 CDS Deval_0290 NC_017310.1 368208 368468 R KEGG: dde:Dde_0288 hypothetical protein; hypothetical protein complement(368208..368468) Desulfovibrio vulgaris RCH1 12867232 YP_005701100.1 CDS Deval_0291 NC_017310.1 368785 369573 D KEGG: dde:Dde_0294 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; transcriptional activator, Baf family 368785..369573 Desulfovibrio vulgaris RCH1 12867233 YP_005701101.1 CDS Deval_0292 NC_017310.1 369662 370975 D TIGRFAM: enolase; KEGG: dde:Dde_0295 phosphopyruvate hydratase; PFAM: Enolase-like; enolase 369662..370975 Desulfovibrio vulgaris RCH1 12867234 YP_005701102.1 CDS Deval_0293 NC_017310.1 371188 372048 D KEGG: dde:Dde_0296 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase 371188..372048 Desulfovibrio vulgaris RCH1 12867235 YP_005701103.1 CDS Deval_0294 NC_017310.1 372498 373595 D KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD 372498..373595 Desulfovibrio vulgaris RCH1 12867236 YP_005701104.1 CDS Deval_0295 NC_017310.1 373602 374627 D KEGG: dde:Dde_0363 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; hydrogenase expression/formation protein HypE 373602..374627 Desulfovibrio vulgaris RCH1 12867237 YP_005701105.1 CDS Deval_0296 NC_017310.1 374783 376129 R KEGG: dds:Ddes_0107 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; sugar transferase, PEP-CTERM system associated; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(374783..376129) Desulfovibrio vulgaris RCH1 12867238 YP_005701106.1 CDS Deval_0297 NC_017310.1 376126 377271 R PFAM: glycosyl transferase group 1; KEGG: dds:Ddes_0108 glycosyl transferase group 1; group 1 glycosyl transferase complement(376126..377271) Desulfovibrio vulgaris RCH1 12867239 YP_005701107.1 CDS Deval_0298 NC_017310.1 377562 378800 R KEGG: dma:DMR_27280 response regulator receiver protein; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; SMART: response regulator receiver; putative signal transduction protein complement(377562..378800) Desulfovibrio vulgaris RCH1 12867240 YP_005701108.1 CDS Deval_0299 NC_017310.1 378800 381823 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; KEGG: dma:DMR_38800 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; multi-sensor signal transduction histidine kinase complement(378800..381823) Desulfovibrio vulgaris RCH1 12867241 YP_005701109.1 CDS Deval_0300 NC_017310.1 381933 382589 D KEGG: dma:DMR_20340 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 381933..382589 Desulfovibrio vulgaris RCH1 12867242 YP_005701110.1 CDS Deval_0301 NC_017310.1 382546 383457 D TIGRFAM: D-alanine/D-alanine ligase; KEGG: dde:Dde_0366 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 382546..383457 Desulfovibrio vulgaris RCH1 12867243 YP_005701111.1 CDS Deval_0302 NC_017310.1 383543 385135 D PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase, putative; three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 383543..385135 Desulfovibrio vulgaris RCH1 12867244 YP_005701112.1 CDS Deval_0303 NC_017310.1 385336 386676 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like; DegT/DnrJ/EryC1/StrS aminotransferase complement(385336..386676) Desulfovibrio vulgaris RCH1 12867245 YP_005701113.1 CDS Deval_0304 NC_017310.1 386673 388589 R KEGG: dds:Ddes_2311 hypothetical protein; hypothetical protein complement(386673..388589) Desulfovibrio vulgaris RCH1 12867246 YP_005701114.1 CDS Deval_0305 NC_017310.1 388663 389304 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dds:Ddes_2045 haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase complement(388663..389304) Desulfovibrio vulgaris RCH1 12867247 YP_005701115.1 CDS Deval_0306 NC_017310.1 389334 390239 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(389334..390239) Desulfovibrio vulgaris RCH1 12867248 YP_005701116.1 CDS Deval_0307 NC_017310.1 390382 390975 R KEGG: dds:Ddes_2046 transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein complement(390382..390975) Desulfovibrio vulgaris RCH1 12867249 YP_005701117.1 CDS Deval_0308 NC_017310.1 390985 391755 R KEGG: dde:Dde_3687 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-manno-octulosonate cytidylyltransferase complement(390985..391755) Desulfovibrio vulgaris RCH1 12867250 YP_005701118.1 CDS Deval_0309 NC_017310.1 392068 392982 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_2048 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(392068..392982) Desulfovibrio vulgaris RCH1 12867251 YP_005701119.1 CDS Deval_0310 NC_017310.1 392985 393767 R PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein; HpcH/HpaI aldolase complement(392985..393767) Desulfovibrio vulgaris RCH1 12867252 YP_005701120.1 CDS Deval_0311 NC_017310.1 394235 396049 R KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(394235..396049) Desulfovibrio vulgaris RCH1 12867253 YP_005701121.1 CDS Deval_0312 NC_017310.1 396396 397934 R PFAM: polysaccharide biosynthesis protein; KEGG: dds:Ddes_2111 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(396396..397934) Desulfovibrio vulgaris RCH1 12867254 YP_005701122.1 CDS Deval_0313 NC_017310.1 398230 398901 R PFAM: transferase hexapeptide repeat containing protein; KEGG: dds:Ddes_0078 transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein complement(398230..398901) Desulfovibrio vulgaris RCH1 12867255 YP_005701123.1 CDS Deval_0314 NC_017310.1 398920 400611 R KEGG: dds:Ddes_1889 hypothetical protein; hypothetical protein complement(398920..400611) Desulfovibrio vulgaris RCH1 12867256 YP_005701124.1 CDS Deval_0315 NC_017310.1 400664 401722 R KEGG: dds:Ddes_1890 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; N-acetylneuraminate synthase complement(400664..401722) Desulfovibrio vulgaris RCH1 12867257 YP_005701125.1 CDS Deval_0316 NC_017310.1 401759 402442 R PFAM: acylneuraminate cytidylyltransferase; KEGG: dds:Ddes_2209 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase complement(401759..402442) Desulfovibrio vulgaris RCH1 12867258 YP_005701126.1 CDS Deval_0317 NC_017310.1 402439 404073 R KEGG: dds:Ddes_2211 cytidine 5'monophosphate N-acetylneuraminic acid synthetase; cytidine 5'monophosphate N-acetylneuraminic acid synthetase complement(402439..404073) Desulfovibrio vulgaris RCH1 12867259 YP_005701127.1 CDS Deval_0318 NC_017310.1 404081 405262 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dds:Ddes_2212 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(404081..405262) Desulfovibrio vulgaris RCH1 12867260 YP_005701128.1 CDS Deval_0319 NC_017310.1 405396 406469 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dds:Ddes_2213 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(405396..406469) Desulfovibrio vulgaris RCH1 12867261 YP_005701129.1 CDS Deval_0320 NC_017310.1 407065 407970 D KEGG: pol:Bpro_0121 hypothetical protein; hypothetical protein 407065..407970 Desulfovibrio vulgaris RCH1 12867262 YP_005701130.1 CDS Deval_0321 NC_017310.1 408094 409917 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_0211 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(408094..409917) Desulfovibrio vulgaris RCH1 12867263 YP_005701131.1 CDS Deval_0322 NC_017310.1 410038 410613 D KEGG: dde:Dde_3701 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 410038..410613 Desulfovibrio vulgaris RCH1 12867264 YP_005701132.1 CDS Deval_0323 NC_017310.1 410667 411542 D KEGG: dde:Dde_3758 hypothetical protein; hypothetical protein 410667..411542 Desulfovibrio vulgaris RCH1 12867265 YP_005701133.1 CDS Deval_0324 NC_017310.1 411908 412651 D KEGG: cpy:Cphy_1665 hypothetical protein; hypothetical protein 411908..412651 Desulfovibrio vulgaris RCH1 12867267 YP_005701134.1 CDS Deval_0325 NC_017310.1 412934 413260 D PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein; HesB/YadR/YfhF-family protein 412934..413260 Desulfovibrio vulgaris RCH1 12867268 YP_005701135.1 CDS Deval_0326 NC_017310.1 413956 415647 D KEGG: dde:Dde_0398 acetolactate synthase catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 413956..415647 Desulfovibrio vulgaris RCH1 12867269 YP_005701136.1 CDS Deval_0327 NC_017310.1 415628 415975 D PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_0399 acetolactate synthase 1 regulatory subunit; amino acid-binding ACT protein 415628..415975 Desulfovibrio vulgaris RCH1 12867270 YP_005701137.1 CDS Deval_0328 NC_017310.1 416026 416805 R PFAM: aminotransferase class IV; KEGG: dde:Dde_3619 hypothetical protein; class IV aminotransferase complement(416026..416805) Desulfovibrio vulgaris RCH1 12867271 YP_005701138.1 CDS Deval_0329 NC_017310.1 416802 418373 R PFAM: Chorismate binding-like; KEGG: dde:Dde_3618 aminodeoxychorismate synthase, subunit I; chorismate-binding protein complement(416802..418373) Desulfovibrio vulgaris RCH1 12867272 YP_005701139.1 CDS Deval_0330 NC_017310.1 418345 418899 R PFAM: glutamine amidotransferase class-I; KEGG: dde:Dde_3617 aminodeoxychorismate synthase, glutamine amidotransferase subunit; glutamine amidotransferase complement(418345..418899) Desulfovibrio vulgaris RCH1 12867273 YP_005701140.1 CDS Deval_0331 NC_017310.1 418896 419651 R PFAM: protein of unknown function DUF152; KEGG: dde:Dde_3616 hypothetical protein; hypothetical protein complement(418896..419651) Desulfovibrio vulgaris RCH1 12867274 YP_005701141.1 CDS Deval_0332 NC_017310.1 419642 420232 R KEGG: dma:DMR_23210 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(419642..420232) Desulfovibrio vulgaris RCH1 12867275 YP_005701142.1 CDS Deval_0333 NC_017310.1 420463 420663 D hypothetical protein 420463..420663 Desulfovibrio vulgaris RCH1 12867276 YP_005701143.1 CDS Deval_0334 NC_017310.1 420814 421494 D PFAM: metallophosphoesterase; KEGG: dds:Ddes_0792 metallophosphoesterase; metallophosphoesterase 420814..421494 Desulfovibrio vulgaris RCH1 12867277 YP_005701144.1 CDS Deval_0335 NC_017310.1 422977 424401 D KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 422977..424401 Desulfovibrio vulgaris RCH1 12867279 YP_005701145.1 CDS Deval_0336 NC_017310.1 424701 425393 R KEGG: dsa:Desal_0260 hypothetical protein; hypothetical protein complement(424701..425393) Desulfovibrio vulgaris RCH1 12867280 YP_005701146.1 CDS Deval_0337 NC_017310.1 425451 427862 R SMART: CoA-binding domain protein; KEGG: dba:Dbac_3164 CoA-binding domain-containing protein; CoA-binding protein complement(425451..427862) Desulfovibrio vulgaris RCH1 12867281 YP_005701147.1 CDS Deval_0338 NC_017310.1 427968 430466 R PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dba:Dbac_3081 indolepyruvate ferredoxin oxidoreductase; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein complement(427968..430466) Desulfovibrio vulgaris RCH1 12867282 YP_005701148.1 CDS Deval_0339 NC_017310.1 430551 431780 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rop:ROP_27680 putative Glu/Leu/Phe/Val dehydrogenase family protein; Glu/Leu/Phe/Val dehydrogenase complement(430551..431780) Desulfovibrio vulgaris RCH1 12867283 YP_005701149.1 CDS Deval_0340 NC_017310.1 431802 432068 R KEGG: dsa:Desal_1364 hypothetical protein; hypothetical protein complement(431802..432068) Desulfovibrio vulgaris RCH1 12867284 YP_005701150.1 CDS Deval_0341 NC_017310.1 432072 432989 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsa:Desal_1363 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(432072..432989) Desulfovibrio vulgaris RCH1 12867285 YP_005701151.1 CDS Deval_0342 NC_017310.1 433008 433322 R PFAM: glutaredoxin; KEGG: dsa:Desal_1362 thioredoxin domain protein; glutaredoxin complement(433008..433322) Desulfovibrio vulgaris RCH1 12867286 YP_005701152.1 CDS Deval_0343 NC_017310.1 433345 434022 R PFAM: cyclic nucleotide-binding; KEGG: dsa:Desal_1361 transcriptional regulator, TrmB; CarD family transcriptional regulator complement(433345..434022) Desulfovibrio vulgaris RCH1 12867287 YP_005701153.1 CDS Deval_0344 NC_017310.1 434066 435628 R PFAM: sulfatase; KEGG: dsa:Desal_1360 sulfatase; sulfatase complement(434066..435628) Desulfovibrio vulgaris RCH1 12867288 YP_005701154.1 CDS Deval_0345 NC_017310.1 435676 437067 R KEGG: dsa:Desal_1359 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; Na+/H+ antiporter NhaC complement(435676..437067) Desulfovibrio vulgaris RCH1 12867289 YP_005701155.1 CDS Deval_0346 NC_017310.1 437629 438018 D KEGG: dsa:Desal_2503 hypothetical protein; hypothetical protein 437629..438018 Desulfovibrio vulgaris RCH1 12867290 YP_005701156.1 CDS Deval_0347 NC_017310.1 438377 438949 R PFAM: flavin reductase domain protein FMN-binding; KEGG: dde:Dde_0187 flavoredoxin; flavin reductase domain-containing FMN-binding protein complement(438377..438949) Desulfovibrio vulgaris RCH1 12867291 YP_005701157.1 CDS Deval_0348 NC_017310.1 439193 439942 D KEGG: dde:Dde_0186 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 439193..439942 Desulfovibrio vulgaris RCH1 12867292 YP_005701158.1 CDS Deval_0349 NC_017310.1 440084 440761 D KEGG: dde:Dde_0185 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 440084..440761 Desulfovibrio vulgaris RCH1 12867293 YP_005701159.1 CDS Deval_0350 NC_017310.1 440770 441537 D KEGG: dde:Dde_0184 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 440770..441537 Desulfovibrio vulgaris RCH1 12867294 YP_005701160.1 CDS Deval_0351 NC_017310.1 441537 442211 D KEGG: dde:Dde_0183 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 441537..442211 Desulfovibrio vulgaris RCH1 12867295 YP_005701161.1 CDS Deval_0352 NC_017310.1 442237 443619 D KEGG: dde:Dde_0182 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase 442237..443619 Desulfovibrio vulgaris RCH1 12867296 YP_005701162.1 CDS Deval_0353 NC_017310.1 443680 444438 R PFAM: YaeQ family protein; KEGG: dde:Dde_0512 hypothetical protein; YaeQ family protein complement(443680..444438) Desulfovibrio vulgaris RCH1 12867297 YP_005701163.1 CDS Deval_0354 NC_017310.1 444876 446075 D PFAM: aminotransferase class I and II; KEGG: dde:Dde_0513 aminotransferase; class I and II aminotransferase 444876..446075 Desulfovibrio vulgaris RCH1 12867298 YP_005701164.1 CDS Deval_0355 NC_017310.1 446329 447066 D KEGG: dde:Dde_0514 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; uracil-DNA glycosylase 446329..447066 Desulfovibrio vulgaris RCH1 12867299 YP_005701165.1 CDS Deval_0356 NC_017310.1 447306 448328 R KEGG: dma:DMR_02290 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein complement(447306..448328) Desulfovibrio vulgaris RCH1 12867300 YP_005701166.1 CDS Deval_0357 NC_017310.1 448556 448975 D PFAM: histidine triad (HIT) protein; KEGG: drt:Dret_2237 histidine triad (HIT) protein; histidine triad (HIT) protein 448556..448975 Desulfovibrio vulgaris RCH1 12867301 YP_005701167.1 CDS Deval_0358 NC_017310.1 449003 449290 D KEGG: dde:Dde_0517 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 449003..449290 Desulfovibrio vulgaris RCH1 12867302 YP_005701168.1 CDS Deval_0359 NC_017310.1 449638 450369 R KEGG: dde:Dde_0519 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein; rare lipoprotein A complement(449638..450369) Desulfovibrio vulgaris RCH1 12867303 YP_005701169.1 CDS Deval_0360 NC_017310.1 450450 452276 R PFAM: pyruvate carboxyltransferase; Cache domain protein; KEGG: dde:Dde_0520 HMGL-like domain-containing protein; pyruvate carboxyltransferase complement(450450..452276) Desulfovibrio vulgaris RCH1 12867304 YP_005701170.1 CDS Deval_0361 NC_017310.1 452273 453061 R KEGG: dde:Dde_0521 hypothetical protein; hypothetical protein complement(452273..453061) Desulfovibrio vulgaris RCH1 12867305 YP_005701171.1 CDS Deval_0362 NC_017310.1 453146 453697 R KEGG: dde:Dde_0523 hypothetical protein; hypothetical protein complement(453146..453697) Desulfovibrio vulgaris RCH1 12867306 YP_005701172.1 CDS Deval_0363 NC_017310.1 453715 453981 R KEGG: dde:Dde_0524 hypothetical protein; hypothetical protein complement(453715..453981) Desulfovibrio vulgaris RCH1 12867307 YP_005701173.1 CDS Deval_0364 NC_017310.1 454453 455766 D TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit 454453..455766 Desulfovibrio vulgaris RCH1 12867308 YP_005701174.1 CDS Deval_0365 NC_017310.1 455785 456930 D TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; sulfite reductase, dissimilatory-type beta subunit 455785..456930 Desulfovibrio vulgaris RCH1 12867309 YP_005701175.1 CDS Deval_0366 NC_017310.1 456992 457228 D PFAM: Dissimilatory sulfite reductase D; KEGG: dsa:Desal_0789 dissimilatory sulfite reductase D; dissimilatory sulfite reductase D 456992..457228 Desulfovibrio vulgaris RCH1 12867310 YP_005701176.1 CDS Deval_0367 NC_017310.1 457344 458750 D KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid a,c-diamide synthase 457344..458750 Desulfovibrio vulgaris RCH1 12867311 YP_005701177.1 CDS Deval_0368 NC_017310.1 459228 460097 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0530 hypothetical protein; hypothetical protein complement(459228..460097) Desulfovibrio vulgaris RCH1 12867312 YP_005701178.1 CDS Deval_0369 NC_017310.1 460335 460979 D KEGG: nmi:NMO_1770 rare lipoprotein A family protein; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein; rare lipoprotein A 460335..460979 Desulfovibrio vulgaris RCH1 12867313 YP_005701179.1 CDS Deval_0370 NC_017310.1 461070 463217 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold-4 domain protein; KEGG: dde:Dde_0532 response regulator receiver/GGDEF/PAS/PAC domain-containing protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 461070..463217 Desulfovibrio vulgaris RCH1 12867314 YP_005701180.1 CDS Deval_0371 NC_017310.1 463440 463790 R KEGG: dde:Dde_0563 hypothetical protein; hypothetical protein complement(463440..463790) Desulfovibrio vulgaris RCH1 12867315 YP_005701181.1 CDS Deval_0372 NC_017310.1 463796 464401 R KEGG: dde:Dde_0564 hypothetical protein; hypothetical protein complement(463796..464401) Desulfovibrio vulgaris RCH1 12867316 YP_005701182.1 CDS Deval_0373 NC_017310.1 464563 466236 R PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein; glycosyl transferase family protein complement(464563..466236) Desulfovibrio vulgaris RCH1 12867317 YP_005701183.1 CDS Deval_0374 NC_017310.1 466253 466918 R PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dde:Dde_0566 potassium uptake protein TrkA, putative; TrkA-N domain-containing protein complement(466253..466918) Desulfovibrio vulgaris RCH1 12867318 YP_005701184.1 CDS Deval_0375 NC_017310.1 466976 468322 R KEGG: dde:Dde_0567 TrkH family potassium uptake protein; PFAM: cation transporter; H(+)-transporting two-sector ATPase complement(466976..468322) Desulfovibrio vulgaris RCH1 12867319 YP_005701185.1 CDS Deval_0376 NC_017310.1 468432 469751 D PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: dsa:Desal_0725 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malic protein NAD-binding protein 468432..469751 Desulfovibrio vulgaris RCH1 12867320 YP_005701186.1 CDS Deval_0377 NC_017310.1 469809 471332 D KEGG: dde:Dde_0568 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; leucyl aminopeptidase 469809..471332 Desulfovibrio vulgaris RCH1 12867321 YP_005701187.1 CDS Deval_0378 NC_017310.1 471587 472705 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase complement(471587..472705) Desulfovibrio vulgaris RCH1 12867322 YP_005701188.1 CDS Deval_0379 NC_017310.1 473282 475201 D KEGG: dds:Ddes_0901 arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; arginine decarboxylase 473282..475201 Desulfovibrio vulgaris RCH1 12867323 YP_005701189.1 CDS Deval_0380 NC_017310.1 475450 476640 D PFAM: Saccharopine dehydrogenase; KEGG: dba:Dbac_2320 saccharopine dehydrogenase; saccharopine dehydrogenase 475450..476640 Desulfovibrio vulgaris RCH1 12867324 YP_005701190.1 CDS Deval_0381 NC_017310.1 476918 478090 D KEGG: dde:Dde_0573 carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; carboxynorspermidine decarboxylase 476918..478090 Desulfovibrio vulgaris RCH1 12867325 YP_005701191.1 CDS Deval_0382 NC_017310.1 478132 478293 D KEGG: dsi:Dsim_GD13772 GD13772 gene product from transcript GD13772-RA; hypothetical protein 478132..478293 Desulfovibrio vulgaris RCH1 12867326 YP_005701192.1 CDS Deval_0383 NC_017310.1 478357 478521 D KEGG: bid:Bind_2238 (glutamate--ammonia-ligase) adenylyltransferase; hypothetical protein 478357..478521 Desulfovibrio vulgaris RCH1 12867327 YP_005701193.1 CDS Deval_0384 NC_017310.1 478532 479404 D KEGG: dde:Dde_0574 agmatinase, putative; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; agmatinase 478532..479404 Desulfovibrio vulgaris RCH1 12867328 YP_005701194.1 CDS Deval_0385 NC_017310.1 479712 482909 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; PAS fold-4 domain protein; GGDEF domain containing protein; KEGG: slt:Slit_2517 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(479712..482909) Desulfovibrio vulgaris RCH1 12867329 YP_005701195.1 CDS Deval_0386 NC_017310.1 483089 483508 D PFAM: UspA domain-containing protein; KEGG: dde:Dde_0589 universal stress protein; UspA domain-containing protein 483089..483508 Desulfovibrio vulgaris RCH1 12867330 YP_005701196.1 CDS Deval_0387 NC_017310.1 483661 485106 D KEGG: dde:Dde_0590 cardiolipin synthetase 2; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase D/Transphosphatidylase 483661..485106 Desulfovibrio vulgaris RCH1 12867331 YP_005701197.1 CDS Deval_0388 NC_017310.1 485291 486181 D KEGG: dde:Dde_0591 hypothetical protein; hypothetical protein 485291..486181 Desulfovibrio vulgaris RCH1 12867332 YP_005701198.1 CDS Deval_0389 NC_017310.1 486389 487741 R KEGG: mfe:Mefer_1074 chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate ion transporter family chromate transporter complement(486389..487741) Desulfovibrio vulgaris RCH1 12867333 YP_005701199.1 CDS Deval_0390 NC_017310.1 488219 488539 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 488219..488539 Desulfovibrio vulgaris RCH1 12867334 YP_005701200.1 CDS Deval_0391 NC_017310.1 488611 488703 R hypothetical protein complement(488611..488703) Desulfovibrio vulgaris RCH1 12867335 YP_005701201.1 CDS Deval_0392 NC_017310.1 488933 489334 R KEGG: dma:DMR_02780 Ech hydrogenase subunit EchF; Ech hydrogenase subunit EchF complement(488933..489334) Desulfovibrio vulgaris RCH1 12867336 YP_005701202.1 CDS Deval_0393 NC_017310.1 489353 490429 R PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dma:DMR_02770 Ech hydrogenase subunit EchE; NADH-ubiquinone oxidoreductase chain 49kDa complement(489353..490429) Desulfovibrio vulgaris RCH1 12867337 YP_005701203.1 CDS Deval_0394 NC_017310.1 490442 490834 R PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dma:DMR_02760 putative Ech hydrogenase subunit EchD; NADH dehydrogenase (ubiquinone) 30 kDa subunit complement(490442..490834) Desulfovibrio vulgaris RCH1 12867338 YP_005701204.1 CDS Deval_0395 NC_017310.1 490870 491343 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dma:DMR_02750 Ech hydrogenase subunit EchC; NADH ubiquinone oxidoreductase 20 kDa subunit complement(490870..491343) Desulfovibrio vulgaris RCH1 12867339 YP_005701205.1 CDS Deval_0396 NC_017310.1 491356 492204 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dma:DMR_02740 Ech hydrogenase subunit EchB; respiratory-chain NADH dehydrogenase subunit 1 complement(491356..492204) Desulfovibrio vulgaris RCH1 12867340 YP_005701206.1 CDS Deval_0397 NC_017310.1 492204 494150 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: dma:DMR_02730 Ech hydrogenase subunit EchA; NADH/ubiquinone/plastoquinone complement(492204..494150) Desulfovibrio vulgaris RCH1 12867341 YP_005701207.1 CDS Deval_0398 NC_017310.1 494461 495165 D PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator; Transcriptional regulator TetR 494461..495165 Desulfovibrio vulgaris RCH1 12867342 YP_005701208.1 CDS Deval_0399 NC_017310.1 495395 496780 D KEGG: dds:Ddes_0900 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 495395..496780 Desulfovibrio vulgaris RCH1 12867343 YP_005701209.1 CDS Deval_0400 NC_017310.1 496777 499902 D PFAM: acriflavin resistance protein; KEGG: gur:Gura_2371 acriflavin resistance protein; acriflavin resistance protein 496777..499902 Desulfovibrio vulgaris RCH1 12867344 YP_005701210.1 CDS Deval_0401 NC_017310.1 499937 500227 D PFAM: YCII-related; KEGG: dma:DMR_24110 hypothetical protein; hypothetical protein 499937..500227 Desulfovibrio vulgaris RCH1 12867345 YP_005701211.1 CDS Deval_0402 NC_017310.1 500696 502027 D KEGG: tai:Taci_0502 protein of unknown function DUF1063; hypothetical protein 500696..502027 Desulfovibrio vulgaris RCH1 12867346 YP_005701212.1 CDS Deval_0403 NC_017310.1 502178 503905 R TIGRFAM: adenine deaminase; KEGG: amt:Amet_4567 adenine deaminase; PFAM: amidohydrolase; adenine deaminase complement(502178..503905) Desulfovibrio vulgaris RCH1 12867347 YP_005701213.1 CDS Deval_0404 NC_017310.1 504352 505548 R KEGG: dba:Dbac_2706 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; PhoH family protein complement(504352..505548) Desulfovibrio vulgaris RCH1 12867348 YP_005701214.1 CDS Deval_0405 NC_017310.1 505761 506516 R KEGG: afw:Anae109_4029 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; Exonuclease RNase T and DNA polymerase III complement(505761..506516) Desulfovibrio vulgaris RCH1 12867349 YP_005701215.1 CDS Deval_0406 NC_017310.1 506503 508725 R KEGG: afw:Anae109_0817 CBS domain-containing protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; SMART: CBS domain containing protein; putative signal transduction protein complement(506503..508725) Desulfovibrio vulgaris RCH1 12867350 YP_005701216.1 CDS Deval_0407 NC_017310.1 508734 510458 R KEGG: dba:Dbac_1022 cyclic nucleotide-binding protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; putative signal transduction protein complement(508734..510458) Desulfovibrio vulgaris RCH1 12867351 YP_005701217.1 CDS Deval_0408 NC_017310.1 510607 512154 R KEGG: dba:Dbac_1021 SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SSS sodium solute transporter superfamily protein complement(510607..512154) Desulfovibrio vulgaris RCH1 12867352 YP_005701218.1 CDS Deval_0409 NC_017310.1 512147 512464 R PFAM: protein of unknown function DUF485; KEGG: dma:DMR_19740 hypothetical membrane protein; hypothetical protein complement(512147..512464) Desulfovibrio vulgaris RCH1 12867353 YP_005701219.1 CDS Deval_0410 NC_017310.1 512858 514003 D KEGG: dds:Ddes_0412 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; GDP-mannose 4,6-dehydratase 512858..514003 Desulfovibrio vulgaris RCH1 12867354 YP_005701220.1 CDS Deval_0411 NC_017310.1 513991 518598 R TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; ATP-binding region ATPase domain protein; response regulator receiver; MCP methyltransferase CheR-type; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_36600 putative chemotaxis CheB/CheR fusion protein; SMART: MCP methyltransferase CheR-type; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; signal transduction histidine kinase with CheB and CheR activity complement(513991..518598) Desulfovibrio vulgaris RCH1 12867355 YP_005701221.1 CDS Deval_0412 NC_017310.1 519381 520325 D KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF 519381..520325 Desulfovibrio vulgaris RCH1 12867357 YP_005701222.1 CDS Deval_0413 NC_017310.1 520330 522141 D PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; KEGG: dde:Dde_3504 chloride channel family protein; Cl- channel voltage-gated family protein 520330..522141 Desulfovibrio vulgaris RCH1 12867358 YP_005701223.1 CDS Deval_0414 NC_017310.1 522281 523717 R PFAM: methyltransferase small; KEGG: drt:Dret_0713 methyltransferase small; methyltransferase small complement(522281..523717) Desulfovibrio vulgaris RCH1 12867359 YP_005701224.1 CDS Deval_0415 NC_017310.1 523934 527317 D PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 523934..527317 Desulfovibrio vulgaris RCH1 12867360 YP_005701225.1 CDS Deval_0416 NC_017310.1 527428 527577 R KEGG: dde:Dde_3498 hypothetical protein; hypothetical protein complement(527428..527577) Desulfovibrio vulgaris RCH1 12867361 YP_005701226.1 CDS Deval_0417 NC_017310.1 527726 528493 D KEGG: dde:Dde_3496 hypothetical protein; hypothetical protein 527726..528493 Desulfovibrio vulgaris RCH1 12867362 YP_005701227.1 CDS Deval_0418 NC_017310.1 528515 529522 D PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein; phosphoesterase RecJ domain-containing protein 528515..529522 Desulfovibrio vulgaris RCH1 12867363 YP_005701228.1 CDS Deval_0419 NC_017310.1 529678 530928 R KEGG: pth:PTH_0666 signaling protein; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase complement(529678..530928) Desulfovibrio vulgaris RCH1 12867364 YP_005701229.1 CDS Deval_0420 NC_017310.1 531920 532021 D hypothetical protein 531920..532021 Desulfovibrio vulgaris RCH1 12867365 YP_005701230.1 CDS Deval_0421 NC_017310.1 532236 533036 D TIGRFAM: predicted phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: dde:Dde_3489 fructose-bisphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase 532236..533036 Desulfovibrio vulgaris RCH1 12867366 YP_005701231.1 CDS Deval_0422 NC_017310.1 533045 534016 D PFAM: 3-dehydroquinate synthase; KEGG: dde:Dde_3488 3-dehydroquinate synthase; 3-dehydroquinate synthase 533045..534016 Desulfovibrio vulgaris RCH1 12867367 YP_005701232.1 CDS Deval_0423 NC_017310.1 534019 535194 D KEGG: dde:Dde_3487 prephenate dehydratase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; chorismate mutase 534019..535194 Desulfovibrio vulgaris RCH1 12867368 YP_005701233.1 CDS Deval_0424 NC_017310.1 535194 536513 D TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: dde:Dde_3486 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase 535194..536513 Desulfovibrio vulgaris RCH1 12868821 YP_005701234.1 CDS Deval_0425 NC_017310.1 536510 537286 D PFAM: Prephenate dehydrogenase; KEGG: dde:Dde_3485 prephenate dehydrogenase; prephenate dehydrogenase 536510..537286 Desulfovibrio vulgaris RCH1 12868822 YP_005701235.1 CDS Deval_0426 NC_017310.1 537418 539016 D KEGG: dde:Dde_3484 anthranilate synthase, component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; anthranilate synthase 537418..539016 Desulfovibrio vulgaris RCH1 12868823 YP_005701236.1 CDS Deval_0427 NC_017310.1 538997 539626 D KEGG: dds:Ddes_1591 anthranilate phosphoribosyltransferase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; glutamine amidotransferase of anthranilate synthase 538997..539626 Desulfovibrio vulgaris RCH1 12868824 YP_005701237.1 CDS Deval_0428 NC_017310.1 539623 540621 D TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 539623..540621 Desulfovibrio vulgaris RCH1 12868825 YP_005701238.1 CDS Deval_0429 NC_017310.1 540614 541387 D KEGG: amu:Amuc_1533 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; indole-3-glycerol-phosphate synthase 540614..541387 Desulfovibrio vulgaris RCH1 12868826 YP_005701239.1 CDS Deval_0430 NC_017310.1 541384 542289 D KEGG: dma:DMR_05270 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 541384..542289 Desulfovibrio vulgaris RCH1 12868827 YP_005701240.1 CDS Deval_0431 NC_017310.1 542286 543473 D KEGG: dds:Ddes_1588 tryptophan synthase, beta subunit; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 542286..543473 Desulfovibrio vulgaris RCH1 12868828 YP_005701241.1 CDS Deval_0432 NC_017310.1 543470 544243 D TIGRFAM: tryptophan synthase, alpha subunit; KEGG: dde:Dde_3478 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 543470..544243 Desulfovibrio vulgaris RCH1 12868829 YP_005701242.1 CDS Deval_0434 NC_017310.1 545007 546056 R PFAM: Integrase catalytic region; KEGG: glo:Glov_1005 integrase catalytic region; integrase catalytic subunit complement(545007..546056) Desulfovibrio vulgaris RCH1 12868831 YP_005701243.1 CDS Deval_0435 NC_017310.1 546932 548074 D KEGG: dde:Dde_3476 isocitrate dehydrogenase (NADP); PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 546932..548074 Desulfovibrio vulgaris RCH1 12868832 YP_005701244.1 CDS Deval_0436 NC_017310.1 548173 549036 D PFAM: metallophosphoesterase; KEGG: dde:Dde_3469 serine/threonine protein phosphatase family protein; metallophosphoesterase 548173..549036 Desulfovibrio vulgaris RCH1 12868833 YP_005701245.1 CDS Deval_0437 NC_017310.1 549160 550659 D KEGG: dde:Dde_3468 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine protein kinase 549160..550659 Desulfovibrio vulgaris RCH1 12868834 YP_005701246.1 CDS Deval_0438 NC_017310.1 550712 551443 D PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein; hypothetical protein 550712..551443 Desulfovibrio vulgaris RCH1 12868835 YP_005701247.1 CDS Deval_0439 NC_017310.1 551668 552639 D KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6-epimerase precursor; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; ADP-L-glycero-D-manno-heptose-6-epimerase 551668..552639 Desulfovibrio vulgaris RCH1 12868836 YP_005701248.1 CDS Deval_0440 NC_017310.1 552760 554208 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3465 putative PAS/PAC sensor protein; SMART: response regulator receiver; PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(552760..554208) Desulfovibrio vulgaris RCH1 12868837 YP_005701249.1 CDS Deval_0441 NC_017310.1 554508 556742 R KEGG: dde:Dde_3464 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; DNA mismatch repair protein MutL complement(554508..556742) Desulfovibrio vulgaris RCH1 12868838 YP_005701250.1 CDS Deval_0442 NC_017310.1 556945 557739 D KEGG: dsa:Desal_0914 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 556945..557739 Desulfovibrio vulgaris RCH1 12868839 YP_005701251.1 CDS Deval_0443 NC_017310.1 557736 558521 D PFAM: Conserved hypothetical protein CHP00245; KEGG: dde:Dde_3461 hypothetical protein; hypothetical protein 557736..558521 Desulfovibrio vulgaris RCH1 12868840 YP_005701252.1 CDS Deval_0444 NC_017310.1 558565 558894 D KEGG: dde:Dde_3460 hypothetical protein; hypothetical protein 558565..558894 Desulfovibrio vulgaris RCH1 12868841 YP_005701253.1 CDS Deval_0445 NC_017310.1 559194 559694 R TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(559194..559694) Desulfovibrio vulgaris RCH1 12868842 YP_005701254.1 CDS Deval_0446 NC_017310.1 559708 560982 R TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine--glycine ligase complement(559708..560982) Desulfovibrio vulgaris RCH1 12868843 YP_005701255.1 CDS Deval_0447 NC_017310.1 561150 562448 D KEGG: dde:Dde_3457 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; phenylacetate--CoA ligase 561150..562448 Desulfovibrio vulgaris RCH1 12868844 YP_005701256.1 CDS Deval_0449 NC_017310.1 564387 565592 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_3456 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 564387..565592 Desulfovibrio vulgaris RCH1 12868846 YP_005701257.1 CDS Deval_0450 NC_017310.1 565828 566892 R TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: dma:DMR_05160 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase complement(565828..566892) Desulfovibrio vulgaris RCH1 12868847 YP_005701258.1 CDS Deval_0451 NC_017310.1 566902 567210 R PFAM: Domain of unknown function DUF1844; KEGG: dde:Dde_3453 hypothetical protein; hypothetical protein complement(566902..567210) Desulfovibrio vulgaris RCH1 12868848 YP_005701259.1 CDS Deval_0452 NC_017310.1 567276 568445 R PFAM: aminotransferase class V; KEGG: dde:Dde_3452 aminotransferase, class V; class V aminotransferase complement(567276..568445) Desulfovibrio vulgaris RCH1 12868849 YP_005701260.1 CDS Deval_0453 NC_017310.1 568456 569652 R KEGG: dde:Dde_3451 SAM-dependent methyltransferase; SAM-dependent methyltransferase complement(568456..569652) Desulfovibrio vulgaris RCH1 12868850 YP_005701261.1 CDS Deval_0454 NC_017310.1 569845 572892 R TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; KEGG: dde:Dde_3450 DNA polymerase I; SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(569845..572892) Desulfovibrio vulgaris RCH1 12868851 YP_005701262.1 CDS Deval_0455 NC_017310.1 572999 573247 R KEGG: dde:Dde_3449 hypothetical protein; hypothetical protein complement(572999..573247) Desulfovibrio vulgaris RCH1 12868852 YP_005701263.1 CDS Deval_0456 NC_017310.1 573326 574684 R KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein, putative; iron-sulfur cluster-binding protein, putative complement(573326..574684) Desulfovibrio vulgaris RCH1 12868853 YP_005701264.1 CDS Deval_0457 NC_017310.1 575061 575456 R PFAM: protein of unknown function UPF0047; KEGG: dsa:Desal_0262 protein of unknown function UPF0047; hypothetical protein complement(575061..575456) Desulfovibrio vulgaris RCH1 12868854 YP_005701265.1 CDS Deval_0458 NC_017310.1 575806 577734 D TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; selenocysteine-specific translation elongation factor 575806..577734 Desulfovibrio vulgaris RCH1 12868855 YP_005701266.1 CDS Deval_0459 NC_017310.1 578079 578900 R KEGG: dds:Ddes_0053 hypothetical protein; hypothetical protein complement(578079..578900) Desulfovibrio vulgaris RCH1 12868856 YP_005701267.1 CDS Deval_0460 NC_017310.1 578936 579328 R manually curated; KEGG: dde:Dde_3169 hypothetical protein; hypothetical protein complement(578936..579328) Desulfovibrio vulgaris RCH1 12868857 YP_005701268.1 CDS Deval_0461 NC_017310.1 579529 581811 R SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; polyribonucleotide nucleotidyltransferase complement(579529..581811) Desulfovibrio vulgaris RCH1 12868858 YP_005701269.1 CDS Deval_0462 NC_017310.1 581983 582252 R KEGG: dds:Ddes_0055 ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; 30S ribosomal protein S15 complement(581983..582252) Desulfovibrio vulgaris RCH1 12868859 YP_005701270.1 CDS Deval_0463 NC_017310.1 582277 583203 R KEGG: dde:Dde_3165 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B complement(582277..583203) Desulfovibrio vulgaris RCH1 12868860 YP_005701271.1 CDS Deval_0464 NC_017310.1 583196 584197 R PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein; phosphoesterase RecJ domain-containing protein complement(583196..584197) Desulfovibrio vulgaris RCH1 12868861 YP_005701272.1 CDS Deval_0465 NC_017310.1 584215 584505 R PFAM: protein of unknown function DUF503; KEGG: dde:Dde_3163 hypothetical protein; hypothetical protein complement(584215..584505) Desulfovibrio vulgaris RCH1 12868862 YP_005701273.1 CDS Deval_0466 NC_017310.1 584609 587848 R KEGG: dds:Ddes_0059 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; translation initiation factor IF-2 complement(584609..587848) Desulfovibrio vulgaris RCH1 12868863 YP_005701274.1 CDS Deval_0467 NC_017310.1 587852 588082 R PFAM: protein of unknown function DUF448; KEGG: drt:Dret_0496 protein of unknown function DUF448; hypothetical protein complement(587852..588082) Desulfovibrio vulgaris RCH1 12868864 YP_005701275.1 CDS Deval_0468 NC_017310.1 588086 589372 R KEGG: dde:Dde_3161 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; transcription termination factor NusA complement(588086..589372) Desulfovibrio vulgaris RCH1 12868865 YP_005701276.1 CDS Deval_0469 NC_017310.1 589413 589931 R PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein; hypothetical protein complement(589413..589931) Desulfovibrio vulgaris RCH1 12868866 YP_005701277.1 CDS Deval_0470 NC_017310.1 590273 591055 D KEGG: dde:Dde_3159 flagellar basal-body rod protein, putative; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgF 590273..591055 Desulfovibrio vulgaris RCH1 12868867 YP_005701278.1 CDS Deval_0471 NC_017310.1 591112 591894 D KEGG: dde:Dde_3158 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgG 591112..591894 Desulfovibrio vulgaris RCH1 12868868 YP_005701279.1 CDS Deval_0472 NC_017310.1 591902 592876 D TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: dds:Ddes_0393 flagella basal body P-ring formation protein FlgA; flagellar basal body P-ring formation protein FlgA 591902..592876 Desulfovibrio vulgaris RCH1 12868869 YP_005701280.1 CDS Deval_0473 NC_017310.1 592895 593611 D PFAM: flagellar L-ring protein; KEGG: dde:Dde_3156 flagellar basal body L-ring protein; flagellar L-ring protein 592895..593611 Desulfovibrio vulgaris RCH1 12868870 YP_005701281.1 CDS Deval_0474 NC_017310.1 593621 594757 D PFAM: flagellar P-ring protein; KEGG: dds:Ddes_2004 flagellar P-ring protein; flagellar P-ring protein 593621..594757 Desulfovibrio vulgaris RCH1 12868871 YP_005701282.1 CDS Deval_0475 NC_017310.1 594759 596591 D PFAM: Peptidase M23; Flagellar protein FlgJ-like; KEGG: dde:Dde_3154 membrane proteins, metalloendopeptidase-like; peptidase M23 594759..596591 Desulfovibrio vulgaris RCH1 12868872 YP_005701283.1 CDS Deval_0476 NC_017310.1 596615 597079 D PFAM: FlgN family protein; KEGG: lip:LI0746 hypothetical protein; FlgN family protein 596615..597079 Desulfovibrio vulgaris RCH1 12868873 YP_005701284.1 CDS Deval_0477 NC_017310.1 597079 599175 D KEGG: dde:Dde_3152 flagellar hook-associated protein; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-associated protein FlgK 597079..599175 Desulfovibrio vulgaris RCH1 12868874 YP_005701285.1 CDS Deval_0478 NC_017310.1 599187 600758 D KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; flagellar hook-associated protein 3 599187..600758 Desulfovibrio vulgaris RCH1 12868875 YP_005701286.1 CDS Deval_0479 NC_017310.1 600772 601008 D KEGG: dde:Dde_3150 carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; carbon storage regulator CsrA 600772..601008 Desulfovibrio vulgaris RCH1 12868876 YP_005701287.1 CDS Deval_0480 NC_017310.1 600987 601508 D PFAM: protein of unknown function DUF180; KEGG: dde:Dde_3149 flagellar assembly protein FliW; hypothetical protein 600987..601508 Desulfovibrio vulgaris RCH1 12868877 YP_005701288.1 CDS Deval_0481 NC_017310.1 601859 602173 R KEGG: dde:Dde_0638 putative anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein; anti-sigma-28 factor FlgM family protein complement(601859..602173) Desulfovibrio vulgaris RCH1 12868878 YP_005701289.1 CDS Deval_0482 NC_017310.1 602199 602615 R KEGG: dde:Dde_0639 hypothetical protein; hypothetical protein complement(602199..602615) Desulfovibrio vulgaris RCH1 12868879 YP_005701290.1 CDS Deval_0483 NC_017310.1 602833 603501 D KEGG: dal:Dalk_1623 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 602833..603501 Desulfovibrio vulgaris RCH1 12868880 YP_005701291.1 CDS Deval_0484 NC_017310.1 603494 604897 D PFAM: major facilitator superfamily MFS_1; KEGG: dma:DMR_05200 putative drug resistance transporter; major facilitator superfamily protein 603494..604897 Desulfovibrio vulgaris RCH1 12868881 YP_005701292.1 CDS Deval_0485 NC_017310.1 604998 605630 D KEGG: dde:Dde_0640 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 604998..605630 Desulfovibrio vulgaris RCH1 12868882 YP_005701293.1 CDS Deval_0486 NC_017310.1 605623 606102 D PFAM: phosphatidylglycerophosphatase A; KEGG: dde:Dde_0641 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 605623..606102 Desulfovibrio vulgaris RCH1 12868883 YP_005701294.1 CDS Deval_0487 NC_017310.1 606203 606655 R KEGG: dde:Dde_0647 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator complement(606203..606655) Desulfovibrio vulgaris RCH1 12868884 YP_005701295.1 CDS Deval_0488 NC_017310.1 606659 607075 R KEGG: drt:Dret_0869 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(606659..607075) Desulfovibrio vulgaris RCH1 12868885 YP_005701296.1 CDS Deval_0489 NC_017310.1 607168 608553 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6; hypothetical protein complement(607168..608553) Desulfovibrio vulgaris RCH1 12868886 YP_005701297.1 CDS Deval_0490 NC_017310.1 608577 609257 R KEGG: dde:Dde_0649 hmc operon protein 5; hmc operon protein 5 complement(608577..609257) Desulfovibrio vulgaris RCH1 12868887 YP_005701298.1 CDS Deval_0491 NC_017310.1 609279 609422 R KEGG: dde:Dde_0650 hmc operon protein 4; hmc operon protein 4 complement(609279..609422) Desulfovibrio vulgaris RCH1 12868888 YP_005701299.1 CDS Deval_0492 NC_017310.1 609438 610604 R PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3; polysulfide reductase NrfD complement(609438..610604) Desulfovibrio vulgaris RCH1 12868889 YP_005701300.1 CDS Deval_0493 NC_017310.1 610605 611717 R KEGG: dde:Dde_0652 hypothetical protein; hypothetical protein complement(610605..611717) Desulfovibrio vulgaris RCH1 12868890 YP_005701301.1 CDS Deval_0494 NC_017310.1 611736 613373 R PFAM: Cytochrome c, class III, conserved region; cytochrome c class I; KEGG: dde:Dde_0653 high-molecular-weight cytochrome c; cytochrome c, class III, conserved region complement(611736..613373) Desulfovibrio vulgaris RCH1 12868891 YP_005701302.1 CDS Deval_0495 NC_017310.1 613808 614596 D PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: dde:Dde_0655 AP endonuclease; xylose isomerase domain-containing protein 613808..614596 Desulfovibrio vulgaris RCH1 12868892 YP_005701303.1 CDS Deval_0496 NC_017310.1 614614 616017 R KEGG: drt:Dret_0970 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(614614..616017) Desulfovibrio vulgaris RCH1 12868893 YP_005701304.1 CDS Deval_0497 NC_017310.1 616001 618412 R KEGG: dma:DMR_33170 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase complement(616001..618412) Desulfovibrio vulgaris RCH1 12868894 YP_005701305.1 CDS Deval_0498 NC_017310.1 618710 619132 D PFAM: UspA domain-containing protein; KEGG: dma:DMR_33160 putative universal stress protein; UspA domain-containing protein 618710..619132 Desulfovibrio vulgaris RCH1 12868895 YP_005701306.1 CDS Deval_0499 NC_017310.1 619154 620263 D PFAM: Uncharacterised protein family UPF0324; KEGG: dma:DMR_33150 hypothetical membrane protein; hypothetical protein 619154..620263 Desulfovibrio vulgaris RCH1 12868896 YP_005701307.1 CDS Deval_0500 NC_017310.1 620286 620687 D KEGG: dds:Ddes_0931 hypothetical protein; hypothetical protein 620286..620687 Desulfovibrio vulgaris RCH1 12868897 YP_005701308.1 CDS Deval_0501 NC_017310.1 620687 621112 D KEGG: dds:Ddes_0932 hypothetical protein; hypothetical protein 620687..621112 Desulfovibrio vulgaris RCH1 12868898 YP_005701309.1 CDS Deval_0502 NC_017310.1 621561 622679 D PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein; extracellular ligand-binding receptor 621561..622679 Desulfovibrio vulgaris RCH1 12868899 YP_005701310.1 CDS Deval_0503 NC_017310.1 622783 623691 D PFAM: inner-membrane translocator; KEGG: dba:Dbac_2501 inner-membrane translocator; inner-membrane translocator 622783..623691 Desulfovibrio vulgaris RCH1 12868900 YP_005701311.1 CDS Deval_0504 NC_017310.1 623719 624942 D PFAM: inner-membrane translocator; KEGG: dba:Dbac_2500 inner-membrane translocator; inner-membrane translocator 623719..624942 Desulfovibrio vulgaris RCH1 12868901 YP_005701312.1 CDS Deval_0505 NC_017310.1 624942 625730 D KEGG: dsa:Desal_1549 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 624942..625730 Desulfovibrio vulgaris RCH1 12868902 YP_005701313.1 CDS Deval_0506 NC_017310.1 625723 626427 D KEGG: dde:Dde_0608 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 625723..626427 Desulfovibrio vulgaris RCH1 12868903 YP_005701314.1 CDS Deval_0507 NC_017310.1 626629 627594 D PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3057 glycosyl transferase family protein; family 2 glycosyl transferase 626629..627594 Desulfovibrio vulgaris RCH1 12868904 YP_005701315.1 CDS Deval_0508 NC_017310.1 627920 628858 D KEGG: cpb:Cphamn1_2145 NAD-dependent epimerase/dehydratase; manually curated; PFAM: NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 627920..628858 Desulfovibrio vulgaris RCH1 12868905 YP_005701316.1 CDS Deval_0509 NC_017310.1 629180 629443 D PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_3289 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 629180..629443 Desulfovibrio vulgaris RCH1 12868906 YP_005701317.1 CDS Deval_0511 NC_017310.1 630292 631032 D manually curated; KEGG: cli:Clim_1959 hypothetical protein; hypothetical protein 630292..631032 Desulfovibrio vulgaris RCH1 12868908 YP_005701318.1 CDS Deval_0512 NC_017310.1 631118 631699 D manually curated; KEGG: cyn:Cyan7425_3799 methyltransferase type 11; type 11 methyltransferase 631118..631699 Desulfovibrio vulgaris RCH1 12868909 YP_005701319.1 CDS Deval_0513 NC_017310.1 631677 632840 D PFAM: glycosyl transferase group 1; KEGG: dap:Dacet_1892 glycosyl transferase group 1; group 1 glycosyl transferase 631677..632840 Desulfovibrio vulgaris RCH1 12868910 YP_005701320.1 CDS Deval_0514 NC_017310.1 632953 633219 D PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_2193 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 632953..633219 Desulfovibrio vulgaris RCH1 12868911 YP_005701321.1 CDS Deval_0515 NC_017310.1 633216 634064 D KEGG: dba:Dbac_2192 integrase catalytic region; manually curated; PFAM: Integrase catalytic region; integrase catalytic subunit 633216..634064 Desulfovibrio vulgaris RCH1 12868912 YP_005701322.1 CDS Deval_0516 NC_017310.1 634045 634440 R KEGG: glo:Glov_1005 integrase catalytic region; integrase catalytic subunit complement(634045..634440) Desulfovibrio vulgaris RCH1 12868913 YP_005701323.1 CDS Deval_0517 NC_017310.1 634652 635668 R TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: dds:Ddes_0156 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I complement(634652..635668) Desulfovibrio vulgaris RCH1 12868914 YP_005701324.1 CDS Deval_0518 NC_017310.1 635688 636245 R KEGG: dds:Ddes_0158 putative phytochrome sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein; putative GAF sensor protein complement(635688..636245) Desulfovibrio vulgaris RCH1 12868915 YP_005701325.1 CDS Deval_0519 NC_017310.1 636460 637539 R PFAM: Integral membrane protein TerC; KEGG: sat:SYN_01926 tellurium resistance protein; integral membrane protein TerC complement(636460..637539) Desulfovibrio vulgaris RCH1 12868916 YP_005701326.1 CDS Deval_0520 NC_017310.1 637661 638701 R TIGRFAM: tRNA 2-selenouridine synthase; PFAM: Rhodanese domain protein; KEGG: sli:Slin_4991 tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; tRNA 2-selenouridine synthase complement(637661..638701) Desulfovibrio vulgaris RCH1 12868917 YP_005701327.1 CDS Deval_0521 NC_017310.1 638980 640560 D TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; amino acid-binding ACT domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_1552 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 638980..640560 Desulfovibrio vulgaris RCH1 12868918 YP_005701328.1 CDS Deval_0522 NC_017310.1 640939 642051 D TIGRFAM: alanine dehydrogenase; KEGG: dde:Dde_1553 L-alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; alanine dehydrogenase 640939..642051 Desulfovibrio vulgaris RCH1 12868919 YP_005701329.1 CDS Deval_0523 NC_017310.1 642458 642796 D PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein; type IV pilus assembly PilZ 642458..642796 Desulfovibrio vulgaris RCH1 12868920 YP_005701330.1 CDS Deval_0524 NC_017310.1 643229 643714 D PFAM: CreA family protein; KEGG: app:CAP2UW1_0671 CreA family protein; CreA family protein 643229..643714 Desulfovibrio vulgaris RCH1 12868921 YP_005701331.1 CDS Deval_0525 NC_017310.1 643785 644543 D KEGG: tai:Taci_1481 hypothetical protein; hypothetical protein 643785..644543 Desulfovibrio vulgaris RCH1 12868922 YP_005701332.1 CDS Deval_0526 NC_017310.1 644848 645129 R KEGG: dds:Ddes_1270 hypothetical protein; hypothetical protein complement(644848..645129) Desulfovibrio vulgaris RCH1 12868923 YP_005701333.1 CDS Deval_0527 NC_017310.1 645358 645921 R TIGRFAM: methionine-R-sulfoxide reductase; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(645358..645921) Desulfovibrio vulgaris RCH1 12868924 YP_005701334.1 CDS Deval_0528 NC_017310.1 646156 647037 D PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE, putative; formate dehydrogenase accessory protein 646156..647037 Desulfovibrio vulgaris RCH1 12868925 YP_005701335.1 CDS Deval_0529 NC_017310.1 647039 647827 D PFAM: formate dehydrogenase subunit FdhD; KEGG: dde:Dde_0707 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase subunit FdhD 647039..647827 Desulfovibrio vulgaris RCH1 12868926 YP_005701336.1 CDS Deval_0530 NC_017310.1 647824 648492 D KEGG: dde:Dde_0708 molybdopterin-guanine dinucleotide biosynthesis protein A, putative; molybdopterin-guanine dinucleotide biosynthesis protein A 647824..648492 Desulfovibrio vulgaris RCH1 12868927 YP_005701337.1 CDS Deval_0531 NC_017310.1 648489 649514 D TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 648489..649514 Desulfovibrio vulgaris RCH1 12868928 YP_005701338.1 CDS Deval_0532 NC_017310.1 649751 650452 R KEGG: dsa:Desal_1123 anti-sigma-factor antagonist; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(649751..650452) Desulfovibrio vulgaris RCH1 12868929 YP_005701339.1 CDS Deval_0533 NC_017310.1 650488 652506 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(650488..652506) Desulfovibrio vulgaris RCH1 12868930 YP_005701340.1 CDS Deval_0534 NC_017310.1 652503 653774 R PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0712 putative lipoprotein; extracellular ligand-binding receptor complement(652503..653774) Desulfovibrio vulgaris RCH1 12868931 YP_005701341.1 CDS Deval_0535 NC_017310.1 653906 654778 D KEGG: dde:Dde_0714 transposase, putative; transposase 653906..654778 Desulfovibrio vulgaris RCH1 12868932 YP_005701342.1 CDS Deval_0536 NC_017310.1 654941 657334 R KEGG: dat:HRM2_13300 hypothetical protein; hypothetical protein complement(654941..657334) Desulfovibrio vulgaris RCH1 12868933 YP_005701343.1 CDS Deval_0537 NC_017310.1 657710 657934 D KEGG: dde:Dde_0814 hypothetical protein; hypothetical protein 657710..657934 Desulfovibrio vulgaris RCH1 12868934 YP_005701344.1 CDS Deval_0538 NC_017310.1 657952 658527 D PFAM: molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: dde:Dde_0716 formate dehydrogenase; molybdopterin oxidoreductase Fe4S4 region 657952..658527 Desulfovibrio vulgaris RCH1 12868935 YP_005701345.1 CDS Deval_0539 NC_017310.1 658576 660969 D TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: dde:Dde_0717 formate dehydrogenase, alpha subunit, anaerobic; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 658576..660969 Desulfovibrio vulgaris RCH1 12868936 YP_005701346.1 CDS Deval_0540 NC_017310.1 660981 661691 D KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative; formate dehydrogenase subunit beta 660981..661691 Desulfovibrio vulgaris RCH1 12868937 YP_005701347.1 CDS Deval_0541 NC_017310.1 662119 662895 D PFAM: Fe-S cluster domain protein; KEGG: dde:Dde_0719 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Fe-S cluster domain-containing protein 662119..662895 Desulfovibrio vulgaris RCH1 12868938 YP_005701348.1 CDS Deval_0542 NC_017310.1 663379 663687 D KEGG: dde:Dde_0490 hypothetical protein; hypothetical protein 663379..663687 Desulfovibrio vulgaris RCH1 12868939 YP_005701349.1 CDS Deval_0543 NC_017310.1 663871 665829 D KEGG: dsa:Desal_0892 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 663871..665829 Desulfovibrio vulgaris RCH1 12868940 YP_005701350.1 CDS Deval_0544 NC_017310.1 665875 666396 D KEGG: dsa:Desal_3034 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein 665875..666396 Desulfovibrio vulgaris RCH1 12868941 YP_005701351.1 CDS Deval_0545 NC_017310.1 666756 667376 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dsa:Desal_2540 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(666756..667376) Desulfovibrio vulgaris RCH1 12868942 YP_005701352.1 CDS Deval_0546 NC_017310.1 667474 668376 D KEGG: dal:Dalk_5021 chromosome replication initiation inhibitor protein; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR family transcriptional regulator 667474..668376 Desulfovibrio vulgaris RCH1 12868943 YP_005701353.1 CDS Deval_0547 NC_017310.1 668530 668877 D KEGG: dde:Dde_2602 hypothetical protein; hypothetical protein 668530..668877 Desulfovibrio vulgaris RCH1 12868944 YP_005701354.1 CDS Deval_0548 NC_017310.1 669037 669810 D KEGG: dma:DMR_32980 sensory transduction protein LytR; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; LytTR family two component transcriptional regulator 669037..669810 Desulfovibrio vulgaris RCH1 12868945 YP_005701355.1 CDS Deval_0549 NC_017310.1 669909 671651 D KEGG: dma:DMR_32990 sensor protein LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; signal transduction histidine kinase LytS 669909..671651 Desulfovibrio vulgaris RCH1 12868946 YP_005701356.1 CDS Deval_0550 NC_017310.1 671855 673276 D PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A, putative; carbon starvation protein CstA 671855..673276 Desulfovibrio vulgaris RCH1 12868947 YP_005701357.1 CDS Deval_0551 NC_017310.1 673603 675024 D PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A, putative; carbon starvation protein CstA 673603..675024 Desulfovibrio vulgaris RCH1 12868948 YP_005701358.1 CDS Deval_0552 NC_017310.1 675322 676251 D KEGG: chl:Chy400_1816 L-lactate dehydrogenase; TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; L-lactate dehydrogenase 675322..676251 Desulfovibrio vulgaris RCH1 12868949 YP_005701359.1 CDS Deval_0553 NC_017310.1 676663 677097 D PFAM: thioesterase superfamily protein; KEGG: alv:Alvin_0253 thioesterase superfamily protein; thioesterase superfamily protein 676663..677097 Desulfovibrio vulgaris RCH1 12868950 YP_005701360.1 CDS Deval_0554 NC_017310.1 677406 677867 R PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein; hypothetical protein complement(677406..677867) Desulfovibrio vulgaris RCH1 12868952 YP_005701361.1 CDS Deval_0555 NC_017310.1 677997 678263 R KEGG: bvu:BVU_0460 hypothetical protein; hypothetical protein complement(677997..678263) Desulfovibrio vulgaris RCH1 12868953 YP_005701362.1 CDS Deval_0556 NC_017310.1 678775 679698 D KEGG: dde:Dde_3135 ArsR family transcriptional regulator; PFAM: Methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 678775..679698 Desulfovibrio vulgaris RCH1 12868954 YP_005701363.1 CDS Deval_0557 NC_017310.1 679724 681163 D TIGRFAM: adenosylhomocysteinase; KEGG: dde:Dde_3134 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 679724..681163 Desulfovibrio vulgaris RCH1 12868955 YP_005701364.1 CDS Deval_0558 NC_017310.1 681316 683349 R KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(681316..683349) Desulfovibrio vulgaris RCH1 12868956 YP_005701365.1 CDS Deval_0559 NC_017310.1 683505 684140 R PFAM: protein of unknown function DUF330; KEGG: dsh:Dshi_2047 hypothetical protein; hypothetical protein complement(683505..684140) Desulfovibrio vulgaris RCH1 12868957 YP_005701366.1 CDS Deval_0560 NC_017310.1 684137 685057 R PFAM: Mammalian cell entry related domain protein; KEGG: pla:Plav_2514 hypothetical protein; Mammalian cell entry related domain-containing protein complement(684137..685057) Desulfovibrio vulgaris RCH1 12868958 YP_005701367.1 CDS Deval_0561 NC_017310.1 685082 685909 R KEGG: rce:RC1_1442 D-methionine transport ATP-binding protein MetN; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(685082..685909) Desulfovibrio vulgaris RCH1 12868959 YP_005701368.1 CDS Deval_0562 NC_017310.1 685925 687130 R PFAM: protein of unknown function DUF140; KEGG: azl:AZL_e01940 ABC transport system permease protein; hypothetical protein complement(685925..687130) Desulfovibrio vulgaris RCH1 12868960 YP_005701369.1 CDS Deval_0563 NC_017310.1 687614 687895 R KEGG: dds:Ddes_0085 hypothetical protein; hypothetical protein complement(687614..687895) Desulfovibrio vulgaris RCH1 12868961 YP_005701370.1 CDS Deval_0564 NC_017310.1 688075 688470 R KEGG: eba:ebA5995 membrane-associated Zn-dependent protease; hypothetical protein complement(688075..688470) Desulfovibrio vulgaris RCH1 12868962 YP_005701371.1 CDS Deval_0565 NC_017310.1 688460 688750 R KEGG: dsa:Desal_1330 hypothetical protein; hypothetical protein complement(688460..688750) Desulfovibrio vulgaris RCH1 12868963 YP_005701372.1 CDS Deval_0566 NC_017310.1 689035 690474 R KEGG: dsa:Desal_1331 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(689035..690474) Desulfovibrio vulgaris RCH1 12868964 YP_005701373.1 CDS Deval_0567 NC_017310.1 690590 690973 D KEGG: dsa:Desal_1392 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 690590..690973 Desulfovibrio vulgaris RCH1 12868965 YP_005701374.1 CDS Deval_0568 NC_017310.1 691260 692657 R KEGG: dds:Ddes_0084 putative two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; putative two component, sigma54 specific, transcriptional regulator, Fis family complement(691260..692657) Desulfovibrio vulgaris RCH1 12868966 YP_005701375.1 CDS Deval_0569 NC_017310.1 692796 695294 R KEGG: dds:Ddes_0083 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor hybrid histidine kinase complement(692796..695294) Desulfovibrio vulgaris RCH1 12868967 YP_005701376.1 CDS Deval_0570 NC_017310.1 695637 696116 D KEGG: dds:Ddes_0082 NapC/NirT cytochrome c family protein; TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; cytochrome c nitrate reductase, small subunit 695637..696116 Desulfovibrio vulgaris RCH1 12868968 YP_005701377.1 CDS Deval_0571 NC_017310.1 696109 697683 D KEGG: dba:Dbac_2097 nitrite reductase (cytochrome; ammonia-forming); PFAM: cytochrome c552; Nitrite reductase (cytochrome; ammonia-forming) 696109..697683 Desulfovibrio vulgaris RCH1 12868969 YP_005701378.1 CDS Deval_0572 NC_017310.1 698116 698595 D KEGG: dde:Dde_3130 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase small subunit 698116..698595 Desulfovibrio vulgaris RCH1 12868970 YP_005701379.1 CDS Deval_0573 NC_017310.1 698599 699630 D KEGG: dde:Dde_3129 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; Phosphate butyryltransferase 698599..699630 Desulfovibrio vulgaris RCH1 12868971 YP_005701380.1 CDS Deval_0574 NC_017310.1 699627 700745 D KEGG: dde:Dde_3128 butyrate kinase; TIGRFAM: butyrate kinase; PFAM: acetate and butyrate kinase; butyrate kinase 699627..700745 Desulfovibrio vulgaris RCH1 12868972 YP_005701381.1 CDS Deval_0575 NC_017310.1 700888 701448 D PFAM: regulatory protein TetR; KEGG: dde:Dde_3127 TetR family transcriptional regulator; TetR family transcriptional regulator 700888..701448 Desulfovibrio vulgaris RCH1 12868973 YP_005701382.1 CDS Deval_0576 NC_017310.1 701816 703381 R KEGG: dde:Dde_3125 hypothetical protein; hypothetical protein complement(701816..703381) Desulfovibrio vulgaris RCH1 12868974 YP_005701383.1 CDS Deval_0577 NC_017310.1 703628 704080 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: mba:Mbar_A1827 hypothetical protein; cupin complement(703628..704080) Desulfovibrio vulgaris RCH1 12868975 YP_005701384.1 CDS Deval_0578 NC_017310.1 704245 706668 R TIGRFAM: penicillin-binding protein, 1A family; KEGG: dde:Dde_3124 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein complement(704245..706668) Desulfovibrio vulgaris RCH1 12868976 YP_005701385.1 CDS Deval_0579 NC_017310.1 706680 707246 R KEGG: dde:Dde_3123 hypothetical protein; hypothetical protein complement(706680..707246) Desulfovibrio vulgaris RCH1 12868977 YP_005701386.1 CDS Deval_0580 NC_017310.1 707261 708847 R KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; dolichyl-phosphate-mannose-protein mannosyltransferase family protein complement(707261..708847) Desulfovibrio vulgaris RCH1 12868978 YP_005701387.1 CDS Deval_0581 NC_017310.1 709044 709283 R KEGG: zmn:Za10_1095 beta-lactamase; hypothetical protein complement(709044..709283) Desulfovibrio vulgaris RCH1 12868979 YP_005701388.1 CDS Deval_0582 NC_017310.1 709364 710677 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_06018 response regulator; SMART: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 709364..710677 Desulfovibrio vulgaris RCH1 12868980 YP_005701389.1 CDS Deval_0583 NC_017310.1 710957 712345 D PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_3119 hypothetical protein; FAD dependent oxidoreductase 710957..712345 Desulfovibrio vulgaris RCH1 12868981 YP_005701390.1 CDS Deval_0584 NC_017310.1 712478 713344 R KEGG: dde:Dde_3117 hypothetical protein; hypothetical protein complement(712478..713344) Desulfovibrio vulgaris RCH1 12868982 YP_005701391.1 CDS Deval_0585 NC_017310.1 714127 714900 R PFAM: OmpA/MotB domain protein; KEGG: dsa:Desal_3352 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(714127..714900) Desulfovibrio vulgaris RCH1 12868984 YP_005701392.1 CDS Deval_0586 NC_017310.1 714904 715656 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1717 chemotaxis protein PomA; MotA/TolQ/ExbB proton channel complement(714904..715656) Desulfovibrio vulgaris RCH1 12868985 YP_005701393.1 CDS Deval_0587 NC_017310.1 715657 716805 R PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein; hypothetical protein complement(715657..716805) Desulfovibrio vulgaris RCH1 12868986 YP_005701394.1 CDS Deval_0588 NC_017310.1 717205 718017 D PFAM: alpha/beta hydrolase fold; KEGG: bch:Bcen2424_5998 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 717205..718017 Desulfovibrio vulgaris RCH1 12868987 YP_005701395.1 CDS Deval_0589 NC_017310.1 718102 718941 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein, putative; UBA/THIF-type NAD/FAD binding protein 718102..718941 Desulfovibrio vulgaris RCH1 12868988 YP_005701396.1 CDS Deval_0590 NC_017310.1 719384 721423 D KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 719384..721423 Desulfovibrio vulgaris RCH1 12868989 YP_005701397.1 CDS Deval_0591 NC_017310.1 721633 722403 R KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-2 C(20)-methyltransferase complement(721633..722403) Desulfovibrio vulgaris RCH1 12868990 YP_005701398.1 CDS Deval_0592 NC_017310.1 722405 723346 R PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative; periplasmic binding protein complement(722405..723346) Desulfovibrio vulgaris RCH1 12868991 YP_005701399.1 CDS Deval_0593 NC_017310.1 723297 724112 R KEGG: dde:Dde_3105 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(723297..724112) Desulfovibrio vulgaris RCH1 12868992 YP_005701400.1 CDS Deval_0594 NC_017310.1 724109 725164 R PFAM: transport system permease protein; KEGG: dde:Dde_3104 iron compound ABC transporter, permease protein; transport system permease complement(724109..725164) Desulfovibrio vulgaris RCH1 12868993 YP_005701401.1 CDS Deval_0595 NC_017310.1 725166 726059 R KEGG: dba:Dbac_1710 anaerobic cobalt chelatase; PFAM: anaerobic cobalt chelatase; Sirohydrochlorin cobaltochelatase complement(725166..726059) Desulfovibrio vulgaris RCH1 12868994 YP_005701402.1 CDS Deval_0596 NC_017310.1 726686 727774 R KEGG: dde:Dde_3102 hypothetical protein; hypothetical protein complement(726686..727774) Desulfovibrio vulgaris RCH1 12868995 YP_005701403.1 CDS Deval_0597 NC_017310.1 727914 728864 D KEGG: lip:LI1117 chemotaxis signal transduction protein; PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein; response regulator receiver modulated CheW protein 727914..728864 Desulfovibrio vulgaris RCH1 12868996 YP_005701404.1 CDS Deval_0598 NC_017310.1 729475 731160 R KEGG: dde:Dde_3097 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: AAA ATPase; response regulator receiver; putative two component, sigma54 specific, transcriptional regulator, Fis family complement(729475..731160) Desulfovibrio vulgaris RCH1 12868997 YP_005701405.1 CDS Deval_0599 NC_017310.1 731181 732407 R PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase; peptidase U32 complement(731181..732407) Desulfovibrio vulgaris RCH1 12868998 YP_005701406.1 CDS Deval_0600 NC_017310.1 732447 733313 R KEGG: dde:Dde_3094 phosphoesterase PHP-like; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; PHP domain-containing protein complement(732447..733313) Desulfovibrio vulgaris RCH1 12868999 YP_005701407.1 CDS Deval_0601 NC_017310.1 733452 733661 D PFAM: protein of unknown function DUF343; KEGG: dba:Dbac_3220 protein of unknown function DUF343; hypothetical protein 733452..733661 Desulfovibrio vulgaris RCH1 12869000 YP_005701408.1 CDS Deval_0602 NC_017310.1 733728 734141 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3092 HSP20 family protein; heat shock protein Hsp20 733728..734141 Desulfovibrio vulgaris RCH1 12869001 YP_005701409.1 CDS Deval_0603 NC_017310.1 734152 734613 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3091 HSP20 family protein; heat shock protein Hsp20 734152..734613 Desulfovibrio vulgaris RCH1 12869002 YP_005701410.1 CDS Deval_0604 NC_017310.1 734872 735642 R KEGG: dds:Ddes_1303 hypothetical protein; hypothetical protein complement(734872..735642) Desulfovibrio vulgaris RCH1 12869003 YP_005701411.1 CDS Deval_0605 NC_017310.1 735853 736419 D KEGG: dds:Ddes_1746 phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; phosphodiesterase 735853..736419 Desulfovibrio vulgaris RCH1 12869004 YP_005701412.1 CDS Deval_0606 NC_017310.1 736433 737635 D PFAM: dihydrouridine synthase DuS; KEGG: dde:Dde_3089 dihydrouridine synthase family protein; dihydrouridine synthase DuS 736433..737635 Desulfovibrio vulgaris RCH1 12869005 YP_005701413.1 CDS Deval_0607 NC_017310.1 737663 737824 R KEGG: ssc:100154622 similar to synapse defective 1, Rho GTPase, homolog 2; synapse defective 1, Rho GTPase-like protein complement(737663..737824) Desulfovibrio vulgaris RCH1 12869006 YP_005701414.1 CDS Deval_0608 NC_017310.1 737821 738792 R KEGG: dde:Dde_3081 serine O-acetyltransferase; Serine O-acetyltransferase complement(737821..738792) Desulfovibrio vulgaris RCH1 12869007 YP_005701415.1 CDS Deval_0609 NC_017310.1 738960 739886 R KEGG: dde:Dde_3080 cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase complement(738960..739886) Desulfovibrio vulgaris RCH1 12869008 YP_005701416.1 CDS Deval_0610 NC_017310.1 740014 741198 R TIGRFAM: cysteine desulfurase NifS; KEGG: dde:Dde_3079 cysteine desulfurase; PFAM: aminotransferase class V; cysteine desulfurase NifS complement(740014..741198) Desulfovibrio vulgaris RCH1 12869009 YP_005701417.1 CDS Deval_0611 NC_017310.1 741195 742040 R KEGG: dde:Dde_3078 Fe-S cluster assembly protein NifU; TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; Fe-S cluster assembly protein NifU complement(741195..742040) Desulfovibrio vulgaris RCH1 12869010 YP_005701418.1 CDS Deval_0612 NC_017310.1 742137 743123 R KEGG: dde:Dde_3077 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(742137..743123) Desulfovibrio vulgaris RCH1 12869011 YP_005701419.1 CDS Deval_0613 NC_017310.1 743249 744238 R KEGG: dma:DMR_44230 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(743249..744238) Desulfovibrio vulgaris RCH1 12869012 YP_005701420.1 CDS Deval_0614 NC_017310.1 744408 745994 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 744408..745994 Desulfovibrio vulgaris RCH1 12869013 YP_005701421.1 CDS Deval_0615 NC_017310.1 746160 746930 D KEGG: azl:AZL_f01770 hypothetical protein; hypothetical protein 746160..746930 Desulfovibrio vulgaris RCH1 12869014 YP_005701422.1 CDS Deval_0616 NC_017310.1 747011 748222 D PFAM: O-antigen polymerase; KEGG: dba:Dbac_3295 O-antigen polymerase; O-antigen polymerase 747011..748222 Desulfovibrio vulgaris RCH1 12869015 YP_005701423.1 CDS Deval_0617 NC_017310.1 748382 750019 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1218 hypothetical protein; ferredoxin-dependent glutamate synthase complement(748382..750019) Desulfovibrio vulgaris RCH1 12869016 YP_005701424.1 CDS Deval_0618 NC_017310.1 750539 750847 D KEGG: sgr:SGR_3147 hypothetical protein; hypothetical protein 750539..750847 Desulfovibrio vulgaris RCH1 12869017 YP_005701425.1 CDS Deval_0619 NC_017310.1 750875 751711 D KEGG: dde:Dde_3071 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 750875..751711 Desulfovibrio vulgaris RCH1 12869018 YP_005701426.1 CDS Deval_0620 NC_017310.1 751741 752562 D KEGG: dde:Dde_3070 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein 751741..752562 Desulfovibrio vulgaris RCH1 12869019 YP_005701427.1 CDS Deval_0621 NC_017310.1 752577 753521 D KEGG: dde:Dde_3069 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 752577..753521 Desulfovibrio vulgaris RCH1 12869020 YP_005701428.1 CDS Deval_0622 NC_017310.1 753803 754852 R manually curated; KEGG: dds:Ddes_0869 membrane-bound lytic murein transglycosylase B-like protein; membrane-bound lytic murein transglycosylase B-like protein complement(753803..754852) Desulfovibrio vulgaris RCH1 12869021 YP_005701429.1 CDS Deval_0623 NC_017310.1 755206 756672 R KEGG: dde:Dde_2952 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(755206..756672) Desulfovibrio vulgaris RCH1 12869022 YP_005701430.1 CDS Deval_0624 NC_017310.1 756660 758591 R KEGG: dde:Dde_2951 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(756660..758591) Desulfovibrio vulgaris RCH1 12869023 YP_005701431.1 CDS Deval_0625 NC_017310.1 758594 760597 R KEGG: dsa:Desal_1726 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase complement(758594..760597) Desulfovibrio vulgaris RCH1 12869024 YP_005701432.1 CDS Deval_0626 NC_017310.1 760817 761515 R PFAM: CI repressor; Peptidase S24/S26A/S26B, conserved region; KEGG: dde:Dde_2949 DNA-binding protein, putative; CI repressor complement(760817..761515) Desulfovibrio vulgaris RCH1 12869025 YP_005701433.1 CDS Deval_0627 NC_017310.1 761844 762695 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: lip:LI0676 membrane protease subunits, stomatin/prohibitin homologs; SMART: band 7 protein; HflC protein complement(761844..762695) Desulfovibrio vulgaris RCH1 12869026 YP_005701434.1 CDS Deval_0628 NC_017310.1 762697 763833 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: lip:LI0675 membrane protease subunits, stomatin/prohibitin homologs; SMART: band 7 protein; HflK protein complement(762697..763833) Desulfovibrio vulgaris RCH1 12869027 YP_005701435.1 CDS Deval_0629 NC_017310.1 763885 765246 D PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: dde:Dde_2945 phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 763885..765246 Desulfovibrio vulgaris RCH1 12869028 YP_005701436.1 CDS Deval_0630 NC_017310.1 765306 765818 D KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 765306..765818 Desulfovibrio vulgaris RCH1 12869029 YP_005701437.1 CDS Deval_0631 NC_017310.1 765808 767571 D PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2943 aldehyde:ferredoxin oxidoreductase, tungsten-containing, putative; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 765808..767571 Desulfovibrio vulgaris RCH1 12869030 YP_005701438.1 CDS Deval_0632 NC_017310.1 767572 768072 D KEGG: dde:Dde_2942 hypothetical protein; hypothetical protein 767572..768072 Desulfovibrio vulgaris RCH1 12869031 YP_005701439.1 CDS Deval_0633 NC_017310.1 768082 768552 D PFAM: ribonuclease H; KEGG: dde:Dde_2941 ribonuclease H; ribonuclease H 768082..768552 Desulfovibrio vulgaris RCH1 12869032 YP_005701440.1 CDS Deval_0634 NC_017310.1 768914 769585 D PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein; type IV pilus assembly PilZ 768914..769585 Desulfovibrio vulgaris RCH1 12869033 YP_005701441.1 CDS Deval_0635 NC_017310.1 769600 770559 D KEGG: dds:Ddes_0036 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 769600..770559 Desulfovibrio vulgaris RCH1 12869034 YP_005701442.1 CDS Deval_0636 NC_017310.1 771092 772351 R KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative; molybdopterin oxidoreductase, transmembrane subunit, putative complement(771092..772351) Desulfovibrio vulgaris RCH1 12869035 YP_005701443.1 CDS Deval_0637 NC_017310.1 772355 773122 R KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative; molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative complement(772355..773122) Desulfovibrio vulgaris RCH1 12869036 YP_005701444.1 CDS Deval_0638 NC_017310.1 773135 775210 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; molybdopterin oxidoreductase complement(773135..775210) Desulfovibrio vulgaris RCH1 12869037 YP_005701445.1 CDS Deval_0639 NC_017310.1 775226 775858 R KEGG: dde:Dde_2932 hypothetical protein; hypothetical protein complement(775226..775858) Desulfovibrio vulgaris RCH1 12869038 YP_005701446.1 CDS Deval_0640 NC_017310.1 776373 777791 R TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(776373..777791) Desulfovibrio vulgaris RCH1 12869039 YP_005701447.1 CDS Deval_0641 NC_017310.1 777788 778360 R TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: dde:Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(777788..778360) Desulfovibrio vulgaris RCH1 12869040 YP_005701448.1 CDS Deval_0644 NC_017310.1 780628 783084 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: dsa:Desal_1903 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(780628..783084) Desulfovibrio vulgaris RCH1 12869043 YP_005701449.1 CDS Deval_0645 NC_017310.1 783326 785515 D TIGRFAM: malate synthase G; KEGG: dma:DMR_26930 malate synthase; PFAM: Malate synthase family protein; malate synthase G 783326..785515 Desulfovibrio vulgaris RCH1 12869044 YP_005701450.1 CDS Deval_0647 NC_017310.1 786131 786577 D KEGG: dde:Dde_2858 cytochrome c family protein; cytochrome c family protein 786131..786577 Desulfovibrio vulgaris RCH1 12869046 YP_005701451.1 CDS Deval_0648 NC_017310.1 786737 788560 D TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein LepA domain protein; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; KEGG: dds:Ddes_2193 GTP-binding protein LepA; SMART: elongation factor G domain-containing protein; GTP-binding protein LepA 786737..788560 Desulfovibrio vulgaris RCH1 12869047 YP_005701452.1 CDS Deval_0649 NC_017310.1 788607 789206 D TIGRFAM: signal peptidase I; KEGG: dds:Ddes_0282 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; signal peptidase I 788607..789206 Desulfovibrio vulgaris RCH1 12869048 YP_005701453.1 CDS Deval_0650 NC_017310.1 789656 790939 R KEGG: app:CAP2UW1_3687 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(789656..790939) Desulfovibrio vulgaris RCH1 12869049 YP_005701454.1 CDS Deval_0651 NC_017310.1 790936 791406 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dar:Daro_3390 tripartite ATP-independent periplasmic transporter DctQ; tripartite AtP-independent periplasmic transporter subunit DctQ complement(790936..791406) Desulfovibrio vulgaris RCH1 12869050 YP_005701455.1 CDS Deval_0652 NC_017310.1 791491 792507 R KEGG: tmz:Tmz1t_0498 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP complement(791491..792507) Desulfovibrio vulgaris RCH1 12869051 YP_005701456.1 CDS Deval_0653 NC_017310.1 793490 795154 D TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: lip:LI0751 Mg chelatase-related protein; SMART: AAA ATPase; Mg chelatase subunit ChlI 793490..795154 Desulfovibrio vulgaris RCH1 12869052 YP_005701457.1 CDS Deval_0654 NC_017310.1 795238 795879 D KEGG: dde:Dde_2770 hypothetical protein; hypothetical protein 795238..795879 Desulfovibrio vulgaris RCH1 12869053 YP_005701458.1 CDS Deval_0655 NC_017310.1 796246 797376 D PFAM: Extracellular ligand-binding receptor; KEGG: dds:Ddes_0472 extracellular ligand-binding receptor; extracellular ligand-binding receptor 796246..797376 Desulfovibrio vulgaris RCH1 12869054 YP_005701459.1 CDS Deval_0656 NC_017310.1 797454 798359 D PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 797454..798359 Desulfovibrio vulgaris RCH1 12869055 YP_005701460.1 CDS Deval_0657 NC_017310.1 798356 799309 D PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 798356..799309 Desulfovibrio vulgaris RCH1 12869056 YP_005701461.1 CDS Deval_0658 NC_017310.1 799306 800073 D KEGG: dde:Dde_0261 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 799306..800073 Desulfovibrio vulgaris RCH1 12869057 YP_005701462.1 CDS Deval_0659 NC_017310.1 800087 800803 D KEGG: dde:Dde_0262 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 800087..800803 Desulfovibrio vulgaris RCH1 12869058 YP_005701463.1 CDS Deval_0661 NC_017310.1 802626 803024 D KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 802626..803024 Desulfovibrio vulgaris RCH1 12869059 YP_005701464.1 CDS Deval_0662 NC_017310.1 803021 803863 D PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit; integrase catalytic subunit 803021..803863 Desulfovibrio vulgaris RCH1 12869060 YP_005701465.1 CDS Deval_0663 NC_017310.1 805210 808020 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3113 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 805210..808020 Desulfovibrio vulgaris RCH1 12869061 YP_005701466.1 CDS Deval_0664 NC_017310.1 808007 809563 D KEGG: dba:Dbac_0491 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver; response regulator receiver modulated metal dependent phosphohydrolase 808007..809563 Desulfovibrio vulgaris RCH1 12869062 YP_005701467.1 CDS Deval_0665 NC_017310.1 809680 810861 D TIGRFAM: phosphoribosylglycinamide formyltransferase 2; KEGG: azo:azo1269 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide formyltransferase 2 809680..810861 Desulfovibrio vulgaris RCH1 12869063 YP_005701468.1 CDS Deval_0666 NC_017310.1 811088 812629 R KEGG: dde:Dde_2852 amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; amino acid carrier protein complement(811088..812629) Desulfovibrio vulgaris RCH1 12869064 YP_005701469.1 CDS Deval_0667 NC_017310.1 812888 815035 R KEGG: srm:SRM_01746 hypothetical protein; hypothetical protein complement(812888..815035) Desulfovibrio vulgaris RCH1 12869065 YP_005701470.1 CDS Deval_0668 NC_017310.1 815503 816630 R TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: dde:Dde_2844 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase complement(815503..816630) Desulfovibrio vulgaris RCH1 12869066 YP_005701471.1 CDS Deval_0669 NC_017310.1 816675 817349 R PFAM: Conserved hypothetical protein CHP02117; KEGG: fba:FIC_01478 hypothetical protein; hypothetical protein complement(816675..817349) Desulfovibrio vulgaris RCH1 12869067 YP_005701472.1 CDS Deval_0670 NC_017310.1 817770 818225 D KEGG: dde:Dde_2843 hypothetical protein; hypothetical protein 817770..818225 Desulfovibrio vulgaris RCH1 12869068 YP_005701473.1 CDS Deval_0671 NC_017310.1 818615 819580 R PFAM: Domain of unknown function DUF1848; KEGG: dde:Dde_2841 hypothetical protein; hypothetical protein complement(818615..819580) Desulfovibrio vulgaris RCH1 12869069 YP_005701474.1 CDS Deval_0672 NC_017310.1 819585 820946 R KEGG: dde:Dde_2840 hypothetical protein; hypothetical protein complement(819585..820946) Desulfovibrio vulgaris RCH1 12869070 YP_005701475.1 CDS Deval_0673 NC_017310.1 821038 823692 D KEGG: dds:Ddes_2073 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase 821038..823692 Desulfovibrio vulgaris RCH1 12869071 YP_005701476.1 CDS Deval_0674 NC_017310.1 823809 824297 D KEGG: dsa:Desal_1295 hypothetical protein; hypothetical protein 823809..824297 Desulfovibrio vulgaris RCH1 12869072 YP_005701477.1 CDS Deval_0675 NC_017310.1 824532 826043 D KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; uroporphyrin-III C-methyltransferase 824532..826043 Desulfovibrio vulgaris RCH1 12869073 YP_005701478.1 CDS Deval_0676 NC_017310.1 826751 827185 D PFAM: MOSC domain containing protein; KEGG: dde:Dde_2836 MOSC domain-containing protein; MOSC domain-containing protein 826751..827185 Desulfovibrio vulgaris RCH1 12869074 YP_005701479.1 CDS Deval_0677 NC_017310.1 827212 827889 D KEGG: dds:Ddes_2208 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase 827212..827889 Desulfovibrio vulgaris RCH1 12869075 YP_005701480.1 CDS Deval_0678 NC_017310.1 828142 830385 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2832 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(828142..830385) Desulfovibrio vulgaris RCH1 12869076 YP_005701481.1 CDS Deval_0679 NC_017310.1 830382 831503 R PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_01770 putative ABC transporter substrate binding protein; extracellular ligand-binding receptor complement(830382..831503) Desulfovibrio vulgaris RCH1 12869077 YP_005701482.1 CDS Deval_0680 NC_017310.1 831630 832202 D PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein; AMMECR1 domain-containing protein 831630..832202 Desulfovibrio vulgaris RCH1 12869078 YP_005701483.1 CDS Deval_0681 NC_017310.1 832479 833654 D PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_2829 hypothetical protein; major facilitator superfamily protein 832479..833654 Desulfovibrio vulgaris RCH1 12869079 YP_005701484.1 CDS Deval_0682 NC_017310.1 833711 834187 D KEGG: lip:LI0565 hypothetical protein; hypothetical protein 833711..834187 Desulfovibrio vulgaris RCH1 12869080 YP_005701485.1 CDS Deval_0683 NC_017310.1 834195 835031 D PFAM: UspA domain-containing protein; KEGG: dde:Dde_2827 hypothetical protein; UspA domain-containing protein 834195..835031 Desulfovibrio vulgaris RCH1 12869081 YP_005701486.1 CDS Deval_0684 NC_017310.1 835036 837033 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2826 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 835036..837033 Desulfovibrio vulgaris RCH1 12869082 YP_005701487.1 CDS Deval_0685 NC_017310.1 837033 838742 D TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_2825 Fis family transcriptional regulator; SMART: response regulator receiver; PAS domain containing protein; AAA ATPase; PAS modulated Fis family sigma-54-specific transcriptional regulator 837033..838742 Desulfovibrio vulgaris RCH1 12869083 YP_005701488.1 CDS Deval_0686 NC_017310.1 838975 839793 D PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0234 ABC transporter, periplasmic substrate-binding protein; extracellular solute-binding protein 838975..839793 Desulfovibrio vulgaris RCH1 12869084 YP_005701489.1 CDS Deval_0687 NC_017310.1 840255 840950 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0233 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 840255..840950 Desulfovibrio vulgaris RCH1 12869085 YP_005701490.1 CDS Deval_0688 NC_017310.1 840947 841585 D KEGG: dma:DMR_12530 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 840947..841585 Desulfovibrio vulgaris RCH1 12869086 YP_005701491.1 CDS Deval_0689 NC_017310.1 841671 843617 R KEGG: dde:Dde_2823 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase complement(841671..843617) Desulfovibrio vulgaris RCH1 12869087 YP_005701492.1 CDS Deval_0690 NC_017310.1 843667 844596 R KEGG: dde:Dde_2822 response regulator receiver domain-containing protein; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; LytTR family two component transcriptional regulator complement(843667..844596) Desulfovibrio vulgaris RCH1 12869088 YP_005701493.1 CDS Deval_0691 NC_017310.1 844887 846896 R KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer complement(844887..846896) Desulfovibrio vulgaris RCH1 12869089 YP_005701494.1 CDS Deval_0692 NC_017310.1 847292 849082 R KEGG: dde:Dde_2765 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(847292..849082) Desulfovibrio vulgaris RCH1 12869090 YP_005701495.1 CDS Deval_0693 NC_017310.1 849171 849998 R KEGG: dde:Dde_2764 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein complement(849171..849998) Desulfovibrio vulgaris RCH1 12869091 YP_005701496.1 CDS Deval_0694 NC_017310.1 850096 850827 R KEGG: dde:Dde_2763 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(850096..850827) Desulfovibrio vulgaris RCH1 12869092 YP_005701497.1 CDS Deval_0695 NC_017310.1 851070 852437 R KEGG: dde:Dde_2762 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase complement(851070..852437) Desulfovibrio vulgaris RCH1 12869093 YP_005701498.1 CDS Deval_0696 NC_017310.1 852649 853362 D KEGG: dde:Dde_2717 TPR repeat-containing protein; hypothetical protein 852649..853362 Desulfovibrio vulgaris RCH1 12869094 YP_005701499.1 CDS Deval_0697 NC_017310.1 853362 853682 D PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2760 hypothetical protein; type IV pilus assembly PilZ 853362..853682 Desulfovibrio vulgaris RCH1 12869095 YP_005701500.1 CDS Deval_0698 NC_017310.1 853887 854204 R KEGG: dde:Dde_2759 hypothetical protein; hypothetical protein complement(853887..854204) Desulfovibrio vulgaris RCH1 12869096 YP_005701501.1 CDS Deval_0699 NC_017310.1 854314 855519 R PFAM: peptidase M29 aminopeptidase II; KEGG: dde:Dde_2758 M29 family peptidase; peptidase M29 aminopeptidase II complement(854314..855519) Desulfovibrio vulgaris RCH1 12869097 YP_005701502.1 CDS Deval_0700 NC_017310.1 855782 857059 R KEGG: dde:Dde_2755 TPR repeat-containing protein; hypothetical protein complement(855782..857059) Desulfovibrio vulgaris RCH1 12869098 YP_005701503.1 CDS Deval_0701 NC_017310.1 857063 857653 R KEGG: dds:Ddes_2306 putative lipoprotein; putative lipoprotein complement(857063..857653) Desulfovibrio vulgaris RCH1 12869099 YP_005701504.1 CDS Deval_0702 NC_017310.1 857679 858149 R PFAM: transcription activator effector binding; KEGG: dde:Dde_2753 hypothetical protein; transcription activator effector binding protein complement(857679..858149) Desulfovibrio vulgaris RCH1 12869100 YP_005701505.1 CDS Deval_0703 NC_017310.1 858247 859182 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dsa:Desal_0110 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 858247..859182 Desulfovibrio vulgaris RCH1 12869101 YP_005701506.1 CDS Deval_0704 NC_017310.1 859179 859577 D KEGG: dde:Dde_2752 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 859179..859577 Desulfovibrio vulgaris RCH1 12869102 YP_005701507.1 CDS Deval_0705 NC_017310.1 859870 860136 R KEGG: saz:Sama_0423 putative mitomycin resistance protein; putative mitomycin resistance protein complement(859870..860136) Desulfovibrio vulgaris RCH1 12869103 YP_005701508.1 CDS Deval_0706 NC_017310.1 860129 861493 R KEGG: dde:Dde_2751 glycerate 2-kinase; PFAM: MOFRL domain protein; hydroxypyruvate reductase complement(860129..861493) Desulfovibrio vulgaris RCH1 12869104 YP_005701509.1 CDS Deval_0707 NC_017310.1 861692 862222 D PFAM: transport-associated; KEGG: dds:Ddes_1844 transport-associated; transport-associated protein 861692..862222 Desulfovibrio vulgaris RCH1 12869105 YP_005701510.1 CDS Deval_0708 NC_017310.1 862343 863449 R PFAM: aminotransferase class V; KEGG: dde:Dde_2744 aminotransferase, class V; class V aminotransferase complement(862343..863449) Desulfovibrio vulgaris RCH1 12869106 YP_005701511.1 CDS Deval_0709 NC_017310.1 863538 864386 R TIGRFAM: glutamate racemase; KEGG: dde:Dde_2743 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(863538..864386) Desulfovibrio vulgaris RCH1 12869107 YP_005701512.1 CDS Deval_0710 NC_017310.1 864388 865299 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2742 pyridoxamine kinase; Phosphomethylpyrimidine kinase type-1 complement(864388..865299) Desulfovibrio vulgaris RCH1 12869108 YP_005701513.1 CDS Deval_0711 NC_017310.1 865548 866498 R PFAM: protein of unknown function DUF81; KEGG: protein of unknown function DUF81; hypothetical protein complement(865548..866498) Desulfovibrio vulgaris RCH1 12869109 YP_005701514.1 CDS Deval_0712 NC_017310.1 866653 867723 D PFAM: TOBE domain-containing protein; integrase family protein; KEGG: dma:DMR_06550 putative molybdenum-pterin binding protein; TOBE domain-containing protein 866653..867723 Desulfovibrio vulgaris RCH1 12869110 YP_005701515.1 CDS Deval_0713 NC_017310.1 867965 868312 R KEGG: dde:Dde_1143 hypothetical protein; hypothetical protein complement(867965..868312) Desulfovibrio vulgaris RCH1 12869111 YP_005701516.1 CDS Deval_0714 NC_017310.1 868588 868827 D KEGG: dde:Dde_1145 hypothetical protein; hypothetical protein 868588..868827 Desulfovibrio vulgaris RCH1 12869112 YP_005701517.1 CDS Deval_0715 NC_017310.1 868954 869358 R KEGG: dde:Dde_0984 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; ATP synthase F1 subunit epsilon complement(868954..869358) Desulfovibrio vulgaris RCH1 12869113 YP_005701518.1 CDS Deval_0716 NC_017310.1 869370 870782 R TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: dde:Dde_0985 F0F1 ATP synthase subunit beta; SMART: AAA ATPase; ATP synthase F1 subunit beta complement(869370..870782) Desulfovibrio vulgaris RCH1 12869114 YP_005701519.1 CDS Deval_0717 NC_017310.1 870801 871676 R KEGG: dde:Dde_0986 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma complement(870801..871676) Desulfovibrio vulgaris RCH1 12869115 YP_005701520.1 CDS Deval_0718 NC_017310.1 871693 873201 R KEGG: dde:Dde_0987 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha complement(871693..873201) Desulfovibrio vulgaris RCH1 12869116 YP_005701521.1 CDS Deval_0719 NC_017310.1 873206 873757 R KEGG: dde:Dde_0988 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; ATP synthase F1 subunit delta complement(873206..873757) Desulfovibrio vulgaris RCH1 12869117 YP_005701522.1 CDS Deval_0720 NC_017310.1 873754 874320 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0989 ATP synthase F0, B subunit; H+transporting two-sector ATPase subunit B/B' complement(873754..874320) Desulfovibrio vulgaris RCH1 12869118 YP_005701523.1 CDS Deval_0721 NC_017310.1 874357 874773 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0990 ATP synthase F0, B' subunit, putative; H+transporting two-sector ATPase subunit B/B' complement(874357..874773) Desulfovibrio vulgaris RCH1 12869119 YP_005701524.1 CDS Deval_0722 NC_017310.1 875550 875897 R PFAM: protein of unknown function DUF583; KEGG: dsa:Desal_3460 protein of unknown function DUF583; hypothetical protein complement(875550..875897) Desulfovibrio vulgaris RCH1 12869120 YP_005701525.1 CDS Deval_0723 NC_017310.1 875935 877050 R KEGG: dde:Dde_0992 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein RodA complement(875935..877050) Desulfovibrio vulgaris RCH1 12869121 YP_005701526.1 CDS Deval_0724 NC_017310.1 877047 878834 R TIGRFAM: penicillin-binding protein 2; KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(877047..878834) Desulfovibrio vulgaris RCH1 12869122 YP_005701527.1 CDS Deval_0725 NC_017310.1 878818 879288 R KEGG: dds:Ddes_0162 hypothetical protein; hypothetical protein complement(878818..879288) Desulfovibrio vulgaris RCH1 12869123 YP_005701528.1 CDS Deval_0726 NC_017310.1 879295 880209 R KEGG: lip:LI0393 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; rod shape-determining protein MreC complement(879295..880209) Desulfovibrio vulgaris RCH1 12869124 YP_005701529.1 CDS Deval_0727 NC_017310.1 880211 881251 R KEGG: dds:Ddes_0164 cell shape determining protein, MreB/Mrl family; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein complement(880211..881251) Desulfovibrio vulgaris RCH1 12869125 YP_005701530.1 CDS Deval_0728 NC_017310.1 881326 882381 D TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: dde:Dde_0997 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 881326..882381 Desulfovibrio vulgaris RCH1 12869126 YP_005701531.1 CDS Deval_0729 NC_017310.1 882456 882941 D KEGG: dma:DMR_04660 putative methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 882456..882941 Desulfovibrio vulgaris RCH1 12869127 YP_005701532.1 CDS Deval_0730 NC_017310.1 882935 883267 D KEGG: dde:Dde_1000 hypothetical protein; hypothetical protein 882935..883267 Desulfovibrio vulgaris RCH1 12869128 YP_005701533.1 CDS Deval_0731 NC_017310.1 883880 884644 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1006 enoyl-[acyl-carrier-protein] reductase [NADH]; short-chain dehydrogenase/reductase SDR complement(883880..884644) Desulfovibrio vulgaris RCH1 12869131 YP_005701534.1 CDS Deval_0732 NC_017310.1 884758 885654 R TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dde:Dde_1007 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(884758..885654) Desulfovibrio vulgaris RCH1 12869132 YP_005701535.1 CDS Deval_0733 NC_017310.1 885671 886981 R TIGRFAM: histidinol dehydrogenase; KEGG: dde:Dde_1008 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase complement(885671..886981) Desulfovibrio vulgaris RCH1 12869133 YP_005701536.1 CDS Deval_0734 NC_017310.1 887110 888540 R KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein complement(887110..888540) Desulfovibrio vulgaris RCH1 12869134 YP_005701537.1 CDS Deval_0735 NC_017310.1 888943 890343 R KEGG: dde:Dde_1010 hypothetical protein; hypothetical protein complement(888943..890343) Desulfovibrio vulgaris RCH1 12869135 YP_005701538.1 CDS Deval_0736 NC_017310.1 890808 892874 D TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; helix-hairpin-helix motif; KEGG: dde:Dde_1014 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C 890808..892874 Desulfovibrio vulgaris RCH1 12869136 YP_005701539.1 CDS Deval_0737 NC_017310.1 893096 894361 D KEGG: pfl:PFL_3537 sensory box histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase 893096..894361 Desulfovibrio vulgaris RCH1 12869137 YP_005701540.1 CDS Deval_0738 NC_017310.1 894346 895818 D KEGG: dde:Dde_1016 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 894346..895818 Desulfovibrio vulgaris RCH1 12869138 YP_005701541.1 CDS Deval_0739 NC_017310.1 895986 896282 D KEGG: dde:Dde_1017 hypothetical protein; hypothetical protein 895986..896282 Desulfovibrio vulgaris RCH1 12869139 YP_005701542.1 CDS Deval_0740 NC_017310.1 896285 896689 D KEGG: dde:Dde_1018 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 896285..896689 Desulfovibrio vulgaris RCH1 12869140 YP_005701543.1 CDS Deval_0741 NC_017310.1 896959 897999 R TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dde:Dde_1019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase complement(896959..897999) Desulfovibrio vulgaris RCH1 12869141 YP_005701544.1 CDS Deval_0742 NC_017310.1 898014 899483 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; KEGG: dde:Dde_1020 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A complement(898014..899483) Desulfovibrio vulgaris RCH1 12869142 YP_005701545.1 CDS Deval_0743 NC_017310.1 899505 899789 R KEGG: dde:Dde_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C complement(899505..899789) Desulfovibrio vulgaris RCH1 12869143 YP_005701546.1 CDS Deval_0744 NC_017310.1 899809 901764 R KEGG: dde:Dde_1022 hypothetical protein; hypothetical protein complement(899809..901764) Desulfovibrio vulgaris RCH1 12869144 YP_005701547.1 CDS Deval_0745 NC_017310.1 901929 903839 R KEGG: dde:Dde_1023 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK complement(901929..903839) Desulfovibrio vulgaris RCH1 12869145 YP_005701548.1 CDS Deval_0746 NC_017310.1 904058 904633 R PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE; GrpE protein HSP-70 cofactor complement(904058..904633) Desulfovibrio vulgaris RCH1 12869146 YP_005701549.1 CDS Deval_0747 NC_017310.1 904899 905966 R KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like; heat-inducible transcription repressor HrcA complement(904899..905966) Desulfovibrio vulgaris RCH1 12869147 YP_005701550.1 CDS Deval_0748 NC_017310.1 906099 906584 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_1027 bacterioferritin comigratory protein, putative; alkyl hydroperoxide reductase complement(906099..906584) Desulfovibrio vulgaris RCH1 12869148 YP_005701551.1 CDS Deval_0749 NC_017310.1 906769 908874 R PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein; AsmA family protein complement(906769..908874) Desulfovibrio vulgaris RCH1 12869149 YP_005701552.1 CDS Deval_0750 NC_017310.1 909028 910659 D KEGG: dde:Dde_1030 cobyric acid synthase; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyric acid synthase CobQ 909028..910659 Desulfovibrio vulgaris RCH1 12869150 YP_005701553.1 CDS Deval_0751 NC_017310.1 910722 911189 R KEGG: hsl:OE4693R hypothetical protein; hypothetical protein complement(910722..911189) Desulfovibrio vulgaris RCH1 12869151 YP_005701554.1 CDS Deval_0752 NC_017310.1 911392 913140 D KEGG: dds:Ddes_2030 spermine synthase; hypothetical protein 911392..913140 Desulfovibrio vulgaris RCH1 12869152 YP_005701555.1 CDS Deval_0753 NC_017310.1 913454 914071 R PFAM: NADPH-dependent FMN reductase; KEGG: dba:Dbac_0455 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(913454..914071) Desulfovibrio vulgaris RCH1 12869153 YP_005701556.1 CDS Deval_0754 NC_017310.1 914475 915074 R KEGG: dal:Dalk_0240 hypothetical protein; hypothetical protein complement(914475..915074) Desulfovibrio vulgaris RCH1 12869154 YP_005701557.1 CDS Deval_0755 NC_017310.1 915086 915775 R KEGG: drt:Dret_1156 OmpA/MotB domain protein; hypothetical protein complement(915086..915775) Desulfovibrio vulgaris RCH1 12869155 YP_005701558.1 CDS Deval_0756 NC_017310.1 916149 917330 R TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: dde:Dde_1081 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ complement(916149..917330) Desulfovibrio vulgaris RCH1 12869157 YP_005701559.1 CDS Deval_0757 NC_017310.1 917609 920110 R KEGG: dds:Ddes_1709 preprotein translocase, SecA subunit; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; SEC-C motif domain protein; Preprotein translocase subunit SecA complement(917609..920110) Desulfovibrio vulgaris RCH1 12869158 YP_005701560.1 CDS Deval_0758 NC_017310.1 920273 921595 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative; hypothetical protein complement(920273..921595) Desulfovibrio vulgaris RCH1 12869159 YP_005701561.1 CDS Deval_0759 NC_017310.1 921743 923158 R KEGG: dde:Dde_1087 glycolate oxidase, subunit GlcD, putative; PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase complement(921743..923158) Desulfovibrio vulgaris RCH1 12869160 YP_005701562.1 CDS Deval_0760 NC_017310.1 923187 923651 R KEGG: dde:Dde_1088 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; SsrA-binding protein complement(923187..923651) Desulfovibrio vulgaris RCH1 12869161 YP_005701563.1 CDS Deval_0761 NC_017310.1 923663 925435 R KEGG: dde:Dde_1089 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; phosphoenolpyruvate-protein phosphotransferase complement(923663..925435) Desulfovibrio vulgaris RCH1 12869162 YP_005701564.1 CDS Deval_0762 NC_017310.1 925446 925739 R KEGG: dde:Dde_1090 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; phosphotransferase system, phosphocarrier protein HPr complement(925446..925739) Desulfovibrio vulgaris RCH1 12869163 YP_005701565.1 CDS Deval_0763 NC_017310.1 925767 926525 R PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dde:Dde_1091 PTS system, IID component, putative; PTS system mannose/fructose/sorbose family transporter subunit IID complement(925767..926525) Desulfovibrio vulgaris RCH1 12869164 YP_005701566.1 CDS Deval_0764 NC_017310.1 926941 927768 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_1092 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(926941..927768) Desulfovibrio vulgaris RCH1 12869165 YP_005701567.1 CDS Deval_0765 NC_017310.1 927710 928114 R PFAM: Uncharacterised protein family UPF0102; KEGG: dds:Ddes_1792 protein of unknown function UPF0102; hypothetical protein complement(927710..928114) Desulfovibrio vulgaris RCH1 12869166 YP_005701568.1 CDS Deval_0766 NC_017310.1 928108 928770 R KEGG: dde:Dde_1094 ribonuclease HII; PFAM: ribonuclease HII/HIII; Ribonuclease H complement(928108..928770) Desulfovibrio vulgaris RCH1 12869167 YP_005701569.1 CDS Deval_0767 NC_017310.1 929121 929468 R KEGG: dds:Ddes_1790 ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; 50S ribosomal protein L19 complement(929121..929468) Desulfovibrio vulgaris RCH1 12869168 YP_005701570.1 CDS Deval_0768 NC_017310.1 929522 930799 R TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(929522..930799) Desulfovibrio vulgaris RCH1 12869169 YP_005701571.1 CDS Deval_0769 NC_017310.1 930814 931344 R KEGG: dde:Dde_1097 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; 16S rRNA processing protein RimM complement(930814..931344) Desulfovibrio vulgaris RCH1 12869170 YP_005701572.1 CDS Deval_0770 NC_017310.1 931368 931601 R KEGG: dde:Dde_1098 hypothetical protein; hypothetical protein complement(931368..931601) Desulfovibrio vulgaris RCH1 12869171 YP_005701573.1 CDS Deval_0771 NC_017310.1 931685 931924 R KEGG: dde:Dde_1099 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; 30S ribosomal protein S16 complement(931685..931924) Desulfovibrio vulgaris RCH1 12869172 YP_005701574.1 CDS Deval_0772 NC_017310.1 932003 933529 R TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dds:Ddes_1804 signal recognition particle protein; SMART: AAA ATPase; signal recognition particle protein complement(932003..933529) Desulfovibrio vulgaris RCH1 12869173 YP_005701575.1 CDS Deval_0773 NC_017310.1 933758 934939 R PFAM: aminotransferase class I and II; KEGG: dde:Dde_1103 aspartate aminotransferase; class I and II aminotransferase complement(933758..934939) Desulfovibrio vulgaris RCH1 12869174 YP_005701576.1 CDS Deval_0774 NC_017310.1 935048 935305 R KEGG: dsa:Desal_0226 hypothetical protein; hypothetical protein complement(935048..935305) Desulfovibrio vulgaris RCH1 12869175 YP_005701577.1 CDS Deval_0775 NC_017310.1 935268 936866 R PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like; 3-phosphoshikimate 1- carboxyvinyltransferase complement(935268..936866) Desulfovibrio vulgaris RCH1 12869176 YP_005701578.1 CDS Deval_0776 NC_017310.1 937640 938143 D TIGRFAM: adenylylsulfate reductase, beta subunit; KEGG: dma:DMR_05390 adenylylsulphate reductase alpha subunit; adenylylsulfate reductase subunit beta 937640..938143 Desulfovibrio vulgaris RCH1 12869177 YP_005701579.1 CDS Deval_0777 NC_017310.1 938185 940179 D KEGG: dde:Dde_1110 adenylylsulfate reductase subunit alpha; TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; adenylylsulfate reductase subunit alpha 938185..940179 Desulfovibrio vulgaris RCH1 12869178 YP_005701580.1 CDS Deval_0778 NC_017310.1 940325 941563 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dde:Dde_1111 heterodisulfide reductase, putative; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 940325..941563 Desulfovibrio vulgaris RCH1 12869179 YP_005701581.1 CDS Deval_0779 NC_017310.1 941570 943846 D PFAM: methyl-viologen-reducing hydrogenase delta subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit 941570..943846 Desulfovibrio vulgaris RCH1 12869180 YP_005701582.1 CDS Deval_0780 NC_017310.1 943860 945014 D KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit, putative; heterodisulfide reductase, transmembrane subunit 943860..945014 Desulfovibrio vulgaris RCH1 12869181 YP_005701583.1 CDS Deval_0781 NC_017310.1 945104 945850 D KEGG: dde:Dde_1114 hypothetical protein; hypothetical protein 945104..945850 Desulfovibrio vulgaris RCH1 12869182 YP_005701584.1 CDS Deval_0782 NC_017310.1 946064 946861 D KEGG: pmy:Pmen_3734 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 946064..946861 Desulfovibrio vulgaris RCH1 12869183 YP_005701585.1 CDS Deval_0783 NC_017310.1 946917 948101 R PFAM: protein of unknown function UPF0027; KEGG: pmx:PERMA_0847 GP160; hypothetical protein complement(946917..948101) Desulfovibrio vulgaris RCH1 12869184 YP_005701586.1 CDS Deval_0784 NC_017310.1 948602 949132 R KEGG: dde:Dde_2578 AsnC family transcriptional regulator; AsnC family transcriptional regulator complement(948602..949132) Desulfovibrio vulgaris RCH1 12869185 YP_005701587.1 CDS Deval_0785 NC_017310.1 949142 950323 R KEGG: dba:Dbac_2393 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein complement(949142..950323) Desulfovibrio vulgaris RCH1 12869186 YP_005701588.1 CDS Deval_0786 NC_017310.1 950323 951315 R KEGG: dde:Dde_2576 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; porphobilinogen synthase complement(950323..951315) Desulfovibrio vulgaris RCH1 12869187 YP_005701589.1 CDS Deval_0787 NC_017310.1 951325 952506 R KEGG: dde:Dde_2575 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein complement(951325..952506) Desulfovibrio vulgaris RCH1 12869188 YP_005701590.1 CDS Deval_0788 NC_017310.1 952822 953505 R KEGG: dde:Dde_2573 putative lipoprotein; putative lipoprotein complement(952822..953505) Desulfovibrio vulgaris RCH1 12869189 YP_005701591.1 CDS Deval_0789 NC_017310.1 953590 953925 R KEGG: dde:Dde_1115 hypothetical protein; hypothetical protein complement(953590..953925) Desulfovibrio vulgaris RCH1 12869190 YP_005701592.1 CDS Deval_0790 NC_017310.1 953940 955220 R KEGG: dds:Ddes_0595 hypothetical protein; hypothetical protein complement(953940..955220) Desulfovibrio vulgaris RCH1 12869191 YP_005701593.1 CDS Deval_0791 NC_017310.1 955297 956883 R KEGG: dde:Dde_1117 hypothetical protein; hypothetical protein complement(955297..956883) Desulfovibrio vulgaris RCH1 12869192 YP_005701594.1 CDS Deval_0792 NC_017310.1 957054 958172 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(957054..958172) Desulfovibrio vulgaris RCH1 12869193 YP_005701595.1 CDS Deval_0793 NC_017310.1 958332 959237 R KEGG: dde:Dde_1119 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; flagellar protein FliS complement(958332..959237) Desulfovibrio vulgaris RCH1 12869194 YP_005701596.1 CDS Deval_0794 NC_017310.1 959248 960975 R PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2, putative; flagellar hook-associated 2 domain-containing protein complement(959248..960975) Desulfovibrio vulgaris RCH1 12869195 YP_005701597.1 CDS Deval_0795 NC_017310.1 961113 961898 R PFAM: peptidase M22 glycoprotease; KEGG: dds:Ddes_0514 peptidase M22 glycoprotease; peptidase M22 glycoprotease complement(961113..961898) Desulfovibrio vulgaris RCH1 12869196 YP_005701598.1 CDS Deval_0796 NC_017310.1 961895 962959 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_1122 peptidase RseP; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease complement(961895..962959) Desulfovibrio vulgaris RCH1 12869197 YP_005701599.1 CDS Deval_0797 NC_017310.1 962956 964182 R TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dde:Dde_1123 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(962956..964182) Desulfovibrio vulgaris RCH1 12869198 YP_005701600.1 CDS Deval_0798 NC_017310.1 964179 965681 R PFAM: Pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase, putative; pyridoxal-dependent decarboxylase complement(964179..965681) Desulfovibrio vulgaris RCH1 12869199 YP_005701601.1 CDS Deval_0799 NC_017310.1 965681 966487 R PFAM: phosphatidate cytidylyltransferase; KEGG: dde:Dde_1125 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(965681..966487) Desulfovibrio vulgaris RCH1 12869200 YP_005701602.1 CDS Deval_0800 NC_017310.1 966484 967227 R TIGRFAM: undecaprenyl diphosphate synthase; KEGG: dma:DMR_37900 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(966484..967227) Desulfovibrio vulgaris RCH1 12869201 YP_005701603.1 CDS Deval_0801 NC_017310.1 967345 967905 R KEGG: dds:Ddes_0519 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; ribosome recycling factor complement(967345..967905) Desulfovibrio vulgaris RCH1 12869202 YP_005701604.1 CDS Deval_0802 NC_017310.1 967909 968625 R KEGG: dde:Dde_1129 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase complement(967909..968625) Desulfovibrio vulgaris RCH1 12869203 YP_005701605.1 CDS Deval_0803 NC_017310.1 968674 969441 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1130 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(968674..969441) Desulfovibrio vulgaris RCH1 12869204 YP_005701606.1 CDS Deval_0804 NC_017310.1 969704 970567 R KEGG: lip:LI0378 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; translation elongation factor Ts complement(969704..970567) Desulfovibrio vulgaris RCH1 12869205 YP_005701607.1 CDS Deval_0805 NC_017310.1 970594 971358 R KEGG: dds:Ddes_0346 ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; 30S ribosomal protein S2 complement(970594..971358) Desulfovibrio vulgaris RCH1 12869206 YP_005701608.1 CDS Deval_0806 NC_017310.1 971705 972484 R KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(971705..972484) Desulfovibrio vulgaris RCH1 12869207 YP_005701609.1 CDS Deval_0807 NC_017310.1 972512 974176 R PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1137 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase complement(972512..974176) Desulfovibrio vulgaris RCH1 12869208 YP_005701610.1 CDS Deval_0808 NC_017310.1 974649 975005 R KEGG: ppw:PputW619_3452 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator complement(974649..975005) Desulfovibrio vulgaris RCH1 12869209 YP_005701611.1 CDS Deval_0809 NC_017310.1 975256 975540 R KEGG: mla:Mlab_0696 hypothetical protein; hypothetical protein complement(975256..975540) Desulfovibrio vulgaris RCH1 12869210 YP_005701612.1 CDS Deval_0810 NC_017310.1 976035 978101 R KEGG: dde:Dde_2741 elongation factor G; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; small GTP-binding protein complement(976035..978101) Desulfovibrio vulgaris RCH1 12869211 YP_005701613.1 CDS Deval_0811 NC_017310.1 978307 978771 D KEGG: dde:Dde_2740 hypothetical protein; hypothetical protein 978307..978771 Desulfovibrio vulgaris RCH1 12869212 YP_005701614.1 CDS Deval_0812 NC_017310.1 979045 979302 D PFAM: glutaredoxin; KEGG: dde:Dde_2739 hypothetical protein; glutaredoxin 979045..979302 Desulfovibrio vulgaris RCH1 12869213 YP_005701615.1 CDS Deval_0813 NC_017310.1 979299 979643 D KEGG: dde:Dde_2738 hypothetical protein; hypothetical protein 979299..979643 Desulfovibrio vulgaris RCH1 12869214 YP_005701616.1 CDS Deval_0814 NC_017310.1 979870 980058 R KEGG: tgo:TGME49_090660 polypyrimidine track-binding protein, putative; polypyrimidine track-binding protein, putative complement(979870..980058) Desulfovibrio vulgaris RCH1 12869215 YP_005701617.1 CDS Deval_0815 NC_017310.1 980085 980873 R PFAM: amidohydrolase 2; KEGG: dde:Dde_2736 amidohydrolase family protein; amidohydrolase 2 complement(980085..980873) Desulfovibrio vulgaris RCH1 12869216 YP_005701618.1 CDS Deval_0816 NC_017310.1 980924 981334 R KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase; manually curated; PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(980924..981334) Desulfovibrio vulgaris RCH1 12869217 YP_005701619.1 CDS Deval_0817 NC_017310.1 981389 982663 D KEGG: dde:Dde_2733 transglycosylase, putative; manually curated; PFAM: MltA domain protein; 3D domain-containing protein; MltA domain-containing protein 981389..982663 Desulfovibrio vulgaris RCH1 12869218 YP_005701620.1 CDS Deval_0818 NC_017310.1 982886 984466 D SMART: response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein; manually curated; KEGG: ppd:Ppro_3010 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; response regulator receiver; PAS fold domain protein; ATP-binding region ATPase domain protein; signal transduction histidine kinase 982886..984466 Desulfovibrio vulgaris RCH1 12869219 YP_005701621.1 CDS Deval_0819 NC_017310.1 984562 985698 R KEGG: dde:Dde_2732 phosphoglycerate mutase; PFAM: metalloenzyme domain protein; phosphoglycerate mutase complement(984562..985698) Desulfovibrio vulgaris RCH1 12869220 YP_005701622.1 CDS Deval_0820 NC_017310.1 985698 986972 R PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: dde:Dde_2731 homoserine dehydrogenase; homoserine dehydrogenase complement(985698..986972) Desulfovibrio vulgaris RCH1 12869221 YP_005701623.1 CDS Deval_0821 NC_017310.1 986974 988167 R PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase; class I and II aminotransferase complement(986974..988167) Desulfovibrio vulgaris RCH1 12869222 YP_005701624.1 CDS Deval_0822 NC_017310.1 988291 988818 D KEGG: dde:Dde_2728 shikimate kinase II; PFAM: shikimate kinase; shikimate kinase 988291..988818 Desulfovibrio vulgaris RCH1 12869223 YP_005701625.1 CDS Deval_0823 NC_017310.1 988907 989329 D KEGG: dde:Dde_2727 universal stress protein; manually curated; PFAM: UspA domain-containing protein; UspA domain-containing protein 988907..989329 Desulfovibrio vulgaris RCH1 12869224 YP_005701626.1 CDS Deval_0824 NC_017310.1 989520 990584 D TIGRFAM: chorismate synthase; KEGG: dde:Dde_2726 chorismate synthase; PFAM: chorismate synthase; chorismate synthase 989520..990584 Desulfovibrio vulgaris RCH1 12869225 YP_005701627.1 CDS Deval_0825 NC_017310.1 990757 992985 D TIGRFAM: helicase, RecD/TraA family; KEGG: dde:Dde_2725 helicase RecD/TraA; SMART: AAA ATPase; RecD/TraA family helicase 990757..992985 Desulfovibrio vulgaris RCH1 12869226 YP_005701628.1 CDS Deval_0826 NC_017310.1 993010 994389 D PFAM: NLP/P60 protein; KEGG: dds:Ddes_1599 NLP/P60 protein; NLP/P60 protein 993010..994389 Desulfovibrio vulgaris RCH1 12869227 YP_005701629.1 CDS Deval_0827 NC_017310.1 994391 995767 D TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_2722 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 994391..995767 Desulfovibrio vulgaris RCH1 12869228 YP_005701630.1 CDS Deval_0828 NC_017310.1 995852 996733 D PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; KEGG: dde:Dde_2721 hypothetical protein; hypothetical protein 995852..996733 Desulfovibrio vulgaris RCH1 12869229 YP_005701631.1 CDS Deval_0829 NC_017310.1 996730 996990 D PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein; hypothetical protein 996730..996990 Desulfovibrio vulgaris RCH1 12869230 YP_005701632.1 CDS Deval_0830 NC_017310.1 996990 997613 D SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: dde:Dde_2719 guanylate kinase; PFAM: guanylate kinase; guanylate kinase 996990..997613 Desulfovibrio vulgaris RCH1 12869231 YP_005701633.1 CDS Deval_0831 NC_017310.1 997613 998320 D TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: dde:Dde_2718 orotidine-5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 997613..998320 Desulfovibrio vulgaris RCH1 12869232 YP_005701634.1 CDS Deval_0832 NC_017310.1 998453 999310 D PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2717 TPR repeat-containing protein; hypothetical protein 998453..999310 Desulfovibrio vulgaris RCH1 12869233 YP_005701635.1 CDS Deval_0833 NC_017310.1 999315 1000172 D KEGG: dde:Dde_2716 putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 999315..1000172 Desulfovibrio vulgaris RCH1 12869234 YP_005701636.1 CDS Deval_0834 NC_017310.1 1000229 1001944 D KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; single-stranded-DNA-specific exonuclease RecJ 1000229..1001944 Desulfovibrio vulgaris RCH1 12869235 YP_005701637.1 CDS Deval_0835 NC_017310.1 1002043 1002939 R KEGG: dde:Dde_2714 lipoyl synthase; PFAM: Radical SAM domain protein; manually curated; TIGRFAM: lipoic acid synthetase; SMART: Elongator protein 3/MiaB/NifB; lipoic acid synthetase complement(1002043..1002939) Desulfovibrio vulgaris RCH1 12869236 YP_005701638.1 CDS Deval_0836 NC_017310.1 1002869 1003543 R TIGRFAM: lipoate-protein ligase B; KEGG: dde:Dde_2713 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B complement(1002869..1003543) Desulfovibrio vulgaris RCH1 12869237 YP_005701639.1 CDS Deval_0837 NC_017310.1 1003512 1005404 R PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein; Ribosomal small subunit Rsm22 complement(1003512..1005404) Desulfovibrio vulgaris RCH1 12869238 YP_005701640.1 CDS Deval_0838 NC_017310.1 1005416 1007020 R KEGG: dde:Dde_2711 iron-sulfur cluster-binding protein, putative; iron-sulfur cluster-binding protein, putative complement(1005416..1007020) Desulfovibrio vulgaris RCH1 12869239 YP_005701641.1 CDS Deval_0839 NC_017310.1 1007162 1007608 D KEGG: dde:Dde_2710 hypothetical protein; hypothetical protein 1007162..1007608 Desulfovibrio vulgaris RCH1 12869240 YP_005701642.1 CDS Deval_0840 NC_017310.1 1007744 1008724 D KEGG: dde:Dde_2708 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM 1007744..1008724 Desulfovibrio vulgaris RCH1 12869241 YP_005701643.1 CDS Deval_0841 NC_017310.1 1009324 1010217 R TIGRFAM: tRNA pseudouridine synthase A; KEGG: dde:Dde_2707 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A complement(1009324..1010217) Desulfovibrio vulgaris RCH1 12869242 YP_005701644.1 CDS Deval_0842 NC_017310.1 1010219 1010920 R KEGG: dde:Dde_2706 hypothetical protein; hypothetical protein complement(1010219..1010920) Desulfovibrio vulgaris RCH1 12869243 YP_005701645.1 CDS Deval_0843 NC_017310.1 1010880 1011317 R TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 putative flagellar FliJ protein; flagellar export protein FliJ complement(1010880..1011317) Desulfovibrio vulgaris RCH1 12869244 YP_005701646.1 CDS Deval_0844 NC_017310.1 1011388 1012125 R PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dde:Dde_2704 cobalamin-5'-phosphate synthase; cobalamin-5-phosphate synthase CobS complement(1011388..1012125) Desulfovibrio vulgaris RCH1 12869245 YP_005701647.1 CDS Deval_0845 NC_017310.1 1012504 1013292 R PFAM: protein of unknown function DUF62; KEGG: dsa:Desal_3688 protein of unknown function DUF62; hypothetical protein complement(1012504..1013292) Desulfovibrio vulgaris RCH1 12869246 YP_005701648.1 CDS Deval_0846 NC_017310.1 1013326 1013970 R PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; KEGG: dde:Dde_2702 redox-sensing transcriptional repressor REX; CoA-binding protein complement(1013326..1013970) Desulfovibrio vulgaris RCH1 12869247 YP_005701649.1 CDS Deval_0847 NC_017310.1 1014075 1014404 R KEGG: dde:Dde_2701 ATP synthase F0, C subunit; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; ATP synthase F0 subunit C complement(1014075..1014404) Desulfovibrio vulgaris RCH1 12869248 YP_005701650.1 CDS Deval_0848 NC_017310.1 1014459 1015160 R KEGG: dde:Dde_2700 ATP synthase F0, A subunit; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; ATP synthase F0 subunit A complement(1014459..1015160) Desulfovibrio vulgaris RCH1 12869249 YP_005701651.1 CDS Deval_0849 NC_017310.1 1015165 1015599 R KEGG: dde:Dde_2699 hypothetical protein; manually curated; PFAM: ATP synthase I chain; ATP synthase I chain complement(1015165..1015599) Desulfovibrio vulgaris RCH1 12869250 YP_005701652.1 CDS Deval_0850 NC_017310.1 1015568 1015846 R KEGG: dde:Dde_2698 ATP synthase protein I; ATP synthase protein I complement(1015568..1015846) Desulfovibrio vulgaris RCH1 12869251 YP_005701653.1 CDS Deval_0851 NC_017310.1 1016034 1016501 D KEGG: geo:Geob_0985 pyridoxamine 5'-phosphate oxidase-related FMN-binding; hypothetical protein 1016034..1016501 Desulfovibrio vulgaris RCH1 12869252 YP_005701654.1 CDS Deval_0852 NC_017310.1 1016544 1017026 R KEGG: dsa:Desal_0603 cytochrome c family protein; hypothetical protein complement(1016544..1017026) Desulfovibrio vulgaris RCH1 12869253 YP_005701655.1 CDS Deval_0853 NC_017310.1 1017583 1017981 R PFAM: Endoribonuclease L-PSP; KEGG: cbl:CLK_1449 endoribonuclease L-PSP family protein; endoribonuclease L-PSP complement(1017583..1017981) Desulfovibrio vulgaris RCH1 12869254 YP_005701656.1 CDS Deval_0854 NC_017310.1 1018037 1019443 R KEGG: dde:Dde_2695 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; TrmA family RNA methyltransferase complement(1018037..1019443) Desulfovibrio vulgaris RCH1 12869255 YP_005701657.1 CDS Deval_0855 NC_017310.1 1019886 1020794 R KEGG: dde:Dde_2693 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase complement(1019886..1020794) Desulfovibrio vulgaris RCH1 12869256 YP_005701658.1 CDS Deval_0856 NC_017310.1 1021372 1021680 D KEGG: dde:Dde_2692 50S ribosomal protein L21P; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; 50S ribosomal protein L21 1021372..1021680 Desulfovibrio vulgaris RCH1 12869257 YP_005701659.1 CDS Deval_0857 NC_017310.1 1021701 1021964 D KEGG: dde:Dde_2691 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; 50S ribosomal protein L27 1021701..1021964 Desulfovibrio vulgaris RCH1 12869258 YP_005701660.1 CDS Deval_0858 NC_017310.1 1022113 1023213 D KEGG: dds:Ddes_2248 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP-binding protein Obg/CgtA 1022113..1023213 Desulfovibrio vulgaris RCH1 12869259 YP_005701661.1 CDS Deval_0859 NC_017310.1 1023231 1024373 D TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: dde:Dde_2689 gamma-glutamyl kinase; SMART: PUA domain containing protein; glutamate 5-kinase 1023231..1024373 Desulfovibrio vulgaris RCH1 12869260 YP_005701662.1 CDS Deval_0860 NC_017310.1 1024452 1025258 D KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1024452..1025258 Desulfovibrio vulgaris RCH1 12869261 YP_005701663.1 CDS Deval_0861 NC_017310.1 1025891 1027066 D KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase 1025891..1027066 Desulfovibrio vulgaris RCH1 12869262 YP_005701664.1 CDS Deval_0862 NC_017310.1 1027056 1028300 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; KEGG: cyn:Cyan7425_3275 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: response regulator receiver; PAS domain containing protein; putative PAS/PAC sensor protein 1027056..1028300 Desulfovibrio vulgaris RCH1 12869263 YP_005701665.1 CDS Deval_0863 NC_017310.1 1028293 1028541 D KEGG: olu:OSTLU_40934 predicted protein; hypothetical protein 1028293..1028541 Desulfovibrio vulgaris RCH1 12869264 YP_005701666.1 CDS Deval_0864 NC_017310.1 1028568 1031042 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1028568..1031042 Desulfovibrio vulgaris RCH1 12869265 YP_005701667.1 CDS Deval_0865 NC_017310.1 1031675 1031962 D TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_2684 excisionase/Xis, DNA-binding; excisionase family DNA binding domain-containing protein 1031675..1031962 Desulfovibrio vulgaris RCH1 12869266 YP_005701668.1 CDS Deval_0866 NC_017310.1 1031976 1032362 D KEGG: dds:Ddes_0042 hypothetical protein; hypothetical protein 1031976..1032362 Desulfovibrio vulgaris RCH1 12869267 YP_005701669.1 CDS Deval_0867 NC_017310.1 1032486 1032794 D KEGG: dde:Dde_2682 isoamylase protein-like; isoamylase protein-like protein 1032486..1032794 Desulfovibrio vulgaris RCH1 12869268 YP_005701670.1 CDS Deval_0868 NC_017310.1 1033194 1033943 D KEGG: dde:Dde_2681 hypothetical protein; hypothetical protein 1033194..1033943 Desulfovibrio vulgaris RCH1 12869269 YP_005701671.1 CDS Deval_0869 NC_017310.1 1033956 1034687 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1033956..1034687 Desulfovibrio vulgaris RCH1 12869270 YP_005701672.1 CDS Deval_0870 NC_017310.1 1035039 1037933 D PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: dde:Dde_2677 PreP peptidase; Peptidase M16C associated domain-containing protein 1035039..1037933 Desulfovibrio vulgaris RCH1 12869271 YP_005701673.1 CDS Deval_0871 NC_017310.1 1038010 1038444 D PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein; ferric uptake regulator family protein 1038010..1038444 Desulfovibrio vulgaris RCH1 12869272 YP_005701674.1 CDS Deval_0872 NC_017310.1 1038938 1040677 D PFAM: Uncharacterised protein family UPF0324; KEGG: dde:Dde_0876 hypothetical protein; hypothetical protein 1038938..1040677 Desulfovibrio vulgaris RCH1 12869273 YP_005701675.1 CDS Deval_0873 NC_017310.1 1040731 1040988 D KEGG: dsa:Desal_0415 hypothetical protein; hypothetical protein 1040731..1040988 Desulfovibrio vulgaris RCH1 12869274 YP_005701676.1 CDS Deval_0874 NC_017310.1 1041074 1043506 D KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 1041074..1043506 Desulfovibrio vulgaris RCH1 12869275 YP_005701677.1 CDS Deval_0875 NC_017310.1 1043509 1044939 D KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 1043509..1044939 Desulfovibrio vulgaris RCH1 12869276 YP_005701678.1 CDS Deval_0876 NC_017310.1 1044995 1045900 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1146 hypothetical protein; hypothetical protein complement(1044995..1045900) Desulfovibrio vulgaris RCH1 12869277 YP_005701679.1 CDS Deval_0877 NC_017310.1 1046076 1046549 R KEGG: dma:DMR_05070 hypothetical protein; hypothetical protein complement(1046076..1046549) Desulfovibrio vulgaris RCH1 12869278 YP_005701680.1 CDS Deval_0878 NC_017310.1 1046552 1047313 R PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dsa:Desal_2344 hypothetical protein; nickel transport complex transmembrane protein NikM complement(1046552..1047313) Desulfovibrio vulgaris RCH1 12869279 YP_005701681.1 CDS Deval_0879 NC_017310.1 1047468 1048811 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dde:Dde_0230 molybdopterin molybdochelatase; SMART: molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 1047468..1048811 Desulfovibrio vulgaris RCH1 12869280 YP_005701682.1 CDS Deval_0880 NC_017310.1 1048813 1049685 D PFAM: metallophosphoesterase; KEGG: dde:Dde_0229 hypothetical protein; metallophosphoesterase 1048813..1049685 Desulfovibrio vulgaris RCH1 12869281 YP_005701683.1 CDS Deval_0881 NC_017310.1 1049879 1051075 D SMART: RNA-binding S4 domain protein; TIGRFAM: tyrosyl-tRNA synthetase; KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 1049879..1051075 Desulfovibrio vulgaris RCH1 12869282 YP_005701684.1 CDS Deval_0882 NC_017310.1 1051248 1053584 R PFAM: Organic solvent tolerance protein; OstA family protein; KEGG: dde:Dde_1413 organic solvent tolerance protein, putative; organic solvent tolerance protein complement(1051248..1053584) Desulfovibrio vulgaris RCH1 12869283 YP_005701685.1 CDS Deval_0883 NC_017310.1 1053729 1054859 D TIGRFAM: alanine racemase; KEGG: dba:Dbac_0425 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1053729..1054859 Desulfovibrio vulgaris RCH1 12869284 YP_005701686.1 CDS Deval_0884 NC_017310.1 1054997 1055302 D KEGG: dde:Dde_1412 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 1054997..1055302 Desulfovibrio vulgaris RCH1 12869285 YP_005701687.1 CDS Deval_0885 NC_017310.1 1055303 1055566 D KEGG: dds:Ddes_2023 ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; 30S ribosomal protein S18 1055303..1055566 Desulfovibrio vulgaris RCH1 12869286 YP_005701688.1 CDS Deval_0886 NC_017310.1 1055579 1056082 D KEGG: dds:Ddes_2022 ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like; 50S ribosomal protein L9 1055579..1056082 Desulfovibrio vulgaris RCH1 12869287 YP_005701689.1 CDS Deval_0887 NC_017310.1 1056159 1057514 D manually curated; TIGRFAM: replicative DNA helicase; KEGG: dde:Dde_1409 primary replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; replicative DNA helicase 1056159..1057514 Desulfovibrio vulgaris RCH1 12869288 YP_005701690.1 CDS Deval_0888 NC_017310.1 1057916 1061980 R KEGG: dde:Dde_0225 hypothetical protein; hypothetical protein complement(1057916..1061980) Desulfovibrio vulgaris RCH1 12869289 YP_005701691.1 CDS Deval_0889 NC_017310.1 1062442 1062939 R TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: dds:Ddes_0653 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase complement(1062442..1062939) Desulfovibrio vulgaris RCH1 12869290 YP_005701692.1 CDS Deval_0890 NC_017310.1 1063191 1066184 D PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD); Glu/Leu/Phe/Val dehydrogenase 1063191..1066184 Desulfovibrio vulgaris RCH1 12869291 YP_005701693.1 CDS Deval_0891 NC_017310.1 1066424 1066600 D KEGG: dde:Dde_1384 hypothetical protein; hypothetical protein 1066424..1066600 Desulfovibrio vulgaris RCH1 12869292 YP_005701694.1 CDS Deval_0892 NC_017310.1 1066695 1067513 D KEGG: dba:Dbac_1818 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein 1066695..1067513 Desulfovibrio vulgaris RCH1 12869293 YP_005701695.1 CDS Deval_0893 NC_017310.1 1067783 1068796 D KEGG: dde:Dde_1386 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1067783..1068796 Desulfovibrio vulgaris RCH1 12869294 YP_005701696.1 CDS Deval_0894 NC_017310.1 1068793 1069533 D KEGG: dde:Dde_1387 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1068793..1069533 Desulfovibrio vulgaris RCH1 12869295 YP_005701697.1 CDS Deval_0895 NC_017310.1 1069781 1070527 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dde:Dde_1388 amino acid transporter LysE; lysine exporter protein LysE/YggA 1069781..1070527 Desulfovibrio vulgaris RCH1 12869296 YP_005701698.1 CDS Deval_0896 NC_017310.1 1070527 1071069 D KEGG: dde:Dde_1389 hypothetical protein; hypothetical protein 1070527..1071069 Desulfovibrio vulgaris RCH1 12869297 YP_005701699.1 CDS Deval_0897 NC_017310.1 1071069 1071848 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dds:Ddes_0652 molybdenum cofactor synthesis domain protein; SMART: molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 1071069..1071848 Desulfovibrio vulgaris RCH1 12869298 YP_005701700.1 CDS Deval_0898 NC_017310.1 1071887 1073152 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1391 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1071887..1073152 Desulfovibrio vulgaris RCH1 12869299 YP_005701701.1 CDS Deval_0899 NC_017310.1 1073155 1074018 D KEGG: dde:Dde_1392 4-hydroxybenzoate octaprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyltransferase 1073155..1074018 Desulfovibrio vulgaris RCH1 12869300 YP_005701702.1 CDS Deval_0900 NC_017310.1 1074117 1074455 D KEGG: dde:Dde_1393 hypothetical protein; hypothetical protein 1074117..1074455 Desulfovibrio vulgaris RCH1 12869301 YP_005701703.1 CDS Deval_0901 NC_017310.1 1074488 1075048 D PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein; hypothetical protein 1074488..1075048 Desulfovibrio vulgaris RCH1 12869302 YP_005701704.1 CDS Deval_0902 NC_017310.1 1075191 1076354 R KEGG: dde:Dde_2384 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver complement(1075191..1076354) Desulfovibrio vulgaris RCH1 12869303 YP_005701705.1 CDS Deval_0903 NC_017310.1 1076481 1076888 R KEGG: dde:Dde_2382 hypothetical protein; hypothetical protein complement(1076481..1076888) Desulfovibrio vulgaris RCH1 12869304 YP_005701706.1 CDS Deval_0904 NC_017310.1 1077059 1077913 D KEGG: dma:DMR_43860 putative ABC transporter substrate binding protein precursor; putative ABC transporter substrate binding protein 1077059..1077913 Desulfovibrio vulgaris RCH1 12869305 YP_005701707.1 CDS Deval_0905 NC_017310.1 1078098 1079162 D TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: dde:Dde_1178 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase; dihydroxyacetone kinase subunit DhaK 1078098..1079162 Desulfovibrio vulgaris RCH1 12869306 YP_005701708.1 CDS Deval_0906 NC_017310.1 1079341 1079973 D KEGG: dde:Dde_1179 DAK2 domain-containing protein; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; dihydroxyacetone kinase subunit DhaL 1079341..1079973 Desulfovibrio vulgaris RCH1 12869307 YP_005701709.1 CDS Deval_0907 NC_017310.1 1079977 1082541 D KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; PEP-utilising protein mobile region; phosphoenolpyruvate-protein phosphotransferase 1079977..1082541 Desulfovibrio vulgaris RCH1 12869308 YP_005701710.1 CDS Deval_0908 NC_017310.1 1082579 1083238 R KEGG: dma:DMR_17210 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; PHP domain-containing protein complement(1082579..1083238) Desulfovibrio vulgaris RCH1 12869309 YP_005701711.1 CDS Deval_0909 NC_017310.1 1083240 1083785 R PFAM: protein of unknown function DUF151; KEGG: dde:Dde_2379 hypothetical protein; hypothetical protein complement(1083240..1083785) Desulfovibrio vulgaris RCH1 12869310 YP_005701712.1 CDS Deval_0910 NC_017310.1 1083779 1085209 R TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_2378 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein complement(1083779..1085209) Desulfovibrio vulgaris RCH1 12869311 YP_005701713.1 CDS Deval_0911 NC_017310.1 1085261 1085506 R KEGG: dde:Dde_2377 hypothetical protein; hypothetical protein complement(1085261..1085506) Desulfovibrio vulgaris RCH1 12869312 YP_005701714.1 CDS Deval_0912 NC_017310.1 1085698 1085901 D KEGG: dde:Dde_2375 heavy metal-binding domain-containing protein; heavy metal-binding domain-containing protein 1085698..1085901 Desulfovibrio vulgaris RCH1 12869313 YP_005701715.1 CDS Deval_0913 NC_017310.1 1086359 1087285 R KEGG: dde:Dde_1489 carbohydrate kinase; PFAM: PfkB domain protein; adenosine kinase complement(1086359..1087285) Desulfovibrio vulgaris RCH1 12869314 YP_005701716.1 CDS Deval_0914 NC_017310.1 1087295 1087735 R PFAM: CutA1 divalent ion tolerance protein; KEGG: rru:Rru_A1673 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein complement(1087295..1087735) Desulfovibrio vulgaris RCH1 12869315 YP_005701717.1 CDS Deval_0915 NC_017310.1 1087850 1088707 D SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 1087850..1088707 Desulfovibrio vulgaris RCH1 12869316 YP_005701718.1 CDS Deval_0916 NC_017310.1 1088704 1089522 D KEGG: dde:Dde_1492 hypothetical protein; hypothetical protein 1088704..1089522 Desulfovibrio vulgaris RCH1 12869317 YP_005701719.1 CDS Deval_0917 NC_017310.1 1089710 1090672 D KEGG: dde:Dde_1493 response regulator receiver (CheY-like) modulated CheW protein; PFAM: response regulator receiver; CheW domain protein; SMART: response regulator receiver; CheW domain protein; response regulator receiver modulated CheW protein 1089710..1090672 Desulfovibrio vulgaris RCH1 12869318 YP_005701720.1 CDS Deval_0918 NC_017310.1 1090751 1091473 D KEGG: dde:Dde_2399 hypothetical protein; hypothetical protein 1090751..1091473 Desulfovibrio vulgaris RCH1 12869319 YP_005701721.1 CDS Deval_0919 NC_017310.1 1091746 1091997 R KEGG: dds:Ddes_1403 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; FmdB family regulatory protein complement(1091746..1091997) Desulfovibrio vulgaris RCH1 12869320 YP_005701722.1 CDS Deval_0920 NC_017310.1 1092165 1092752 D KEGG: dde:Dde_1169 peptidase C56, PfpI; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein; Pfpi family intracellular protease 1092165..1092752 Desulfovibrio vulgaris RCH1 12869321 YP_005701723.1 CDS Deval_0921 NC_017310.1 1092965 1093900 R KEGG: dds:Ddes_2009 hypothetical protein; hypothetical protein complement(1092965..1093900) Desulfovibrio vulgaris RCH1 12869322 YP_005701724.1 CDS Deval_0922 NC_017310.1 1094241 1095116 D TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dde:Dde_2525 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1094241..1095116 Desulfovibrio vulgaris RCH1 12869323 YP_005701725.1 CDS Deval_0923 NC_017310.1 1095640 1096695 D PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein; glycosyl transferase family protein 1095640..1096695 Desulfovibrio vulgaris RCH1 12869324 YP_005701726.1 CDS Deval_0924 NC_017310.1 1097306 1099465 D KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like; PFAM: cytochrome c biogenesis protein transmembrane region; Protein-disulfide reductase 1097306..1099465 Desulfovibrio vulgaris RCH1 12869327 YP_005701727.1 CDS Deval_0925 NC_017310.1 1099576 1100799 R PFAM: peptidase M24; KEGG: dde:Dde_1305 M24 family peptidase; peptidase M24 complement(1099576..1100799) Desulfovibrio vulgaris RCH1 12869328 YP_005701728.1 CDS Deval_0926 NC_017310.1 1100927 1101349 D SMART: CoA-binding domain protein; KEGG: dde:Dde_1304 coenzyme A binding protein; CoA-binding protein 1100927..1101349 Desulfovibrio vulgaris RCH1 12869329 YP_005701729.1 CDS Deval_0927 NC_017310.1 1101346 1101801 D PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_1303 hypothetical protein; hypothetical protein 1101346..1101801 Desulfovibrio vulgaris RCH1 12869330 YP_005701730.1 CDS Deval_0928 NC_017310.1 1101816 1102802 D KEGG: dde:Dde_1302 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 1101816..1102802 Desulfovibrio vulgaris RCH1 12869331 YP_005701731.1 CDS Deval_0929 NC_017310.1 1102944 1103828 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2856 hypothetical protein; hypothetical protein complement(1102944..1103828) Desulfovibrio vulgaris RCH1 12869332 YP_005701732.1 CDS Deval_0930 NC_017310.1 1104059 1105279 D KEGG: lip:LI0103 hypothetical protein; hypothetical protein 1104059..1105279 Desulfovibrio vulgaris RCH1 12869333 YP_005701733.1 CDS Deval_0931 NC_017310.1 1105763 1106212 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: dde:Dde_1443 hypothetical protein; membrane-bound metal-dependent hydrolase complement(1105763..1106212) Desulfovibrio vulgaris RCH1 12869334 YP_005701734.1 CDS Deval_0932 NC_017310.1 1106428 1106964 D KEGG: glo:Glov_3081 adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis protein; adenosylcobinamide-phosphate guanylyltransferase 1106428..1106964 Desulfovibrio vulgaris RCH1 12869335 YP_005701735.1 CDS Deval_0933 NC_017310.1 1107143 1107820 D KEGG: dba:Dbac_0437 hypothetical protein; hypothetical protein 1107143..1107820 Desulfovibrio vulgaris RCH1 12869336 YP_005701736.1 CDS Deval_0934 NC_017310.1 1108164 1108754 R KEGG: mbr:MONBRDRAFT_5414 hypothetical protein; hypothetical protein complement(1108164..1108754) Desulfovibrio vulgaris RCH1 12869337 YP_005701737.1 CDS Deval_0935 NC_017310.1 1109518 1118634 R TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: pfo:Pfl01_1463 VCBS; SMART: von Willebrand factor type A; outer membrane adhesin-like protein complement(1109518..1118634) Desulfovibrio vulgaris RCH1 12869338 YP_005701738.1 CDS Deval_0936 NC_017310.1 1118799 1120169 R KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein complement(1118799..1120169) Desulfovibrio vulgaris RCH1 12869339 YP_005701739.1 CDS Deval_0937 NC_017310.1 1120595 1122901 D TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dde:Dde_1418 ATPase; SMART: AAA ATPase; type I secretion system ATPase 1120595..1122901 Desulfovibrio vulgaris RCH1 12869340 YP_005701740.1 CDS Deval_0938 NC_017310.1 1122904 1124250 D KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 1122904..1124250 Desulfovibrio vulgaris RCH1 12869341 YP_005701741.1 CDS Deval_0939 NC_017310.1 1124250 1125470 D KEGG: dde:Dde_1420 hypothetical protein; hypothetical protein 1124250..1125470 Desulfovibrio vulgaris RCH1 12869342 YP_005701742.1 CDS Deval_0940 NC_017310.1 1125473 1127578 D TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 1125473..1127578 Desulfovibrio vulgaris RCH1 12869343 YP_005701743.1 CDS Deval_0941 NC_017310.1 1127797 1128963 R PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein; SufBD protein complement(1127797..1128963) Desulfovibrio vulgaris RCH1 12869344 YP_005701744.1 CDS Deval_0942 NC_017310.1 1128965 1129741 R KEGG: dde:Dde_1445 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1128965..1129741) Desulfovibrio vulgaris RCH1 12869345 YP_005701745.1 CDS Deval_0943 NC_017310.1 1130242 1130982 R PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein; rhomboid family protein complement(1130242..1130982) Desulfovibrio vulgaris RCH1 12869346 YP_005701746.1 CDS Deval_0944 NC_017310.1 1130994 1132619 R SMART: RNA-binding S4 domain protein; TIGRFAM: pseudouridine synthase, RluA family; dephospho-CoA kinase; KEGG: dde:Dde_1447 pseudouridine synthase, RluD; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; Dephospho-CoA kinase; RluA family pseudouridine synthase complement(1130994..1132619) Desulfovibrio vulgaris RCH1 12869347 YP_005701747.1 CDS Deval_0945 NC_017310.1 1132729 1133355 D KEGG: dde:Dde_1448 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 1132729..1133355 Desulfovibrio vulgaris RCH1 12869348 YP_005701748.1 CDS Deval_0946 NC_017310.1 1133535 1134794 D KEGG: dde:Dde_1449 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 1133535..1134794 Desulfovibrio vulgaris RCH1 12869349 YP_005701749.1 CDS Deval_0947 NC_017310.1 1135028 1135999 D KEGG: dma:DMR_13260 hypothetical membrane protein; hypothetical protein 1135028..1135999 Desulfovibrio vulgaris RCH1 12869350 YP_005701750.1 CDS Deval_0948 NC_017310.1 1136236 1136934 R TIGRFAM: cytidylate kinase; KEGG: dds:Ddes_0760 cytidylate kinase; PFAM: cytidylate kinase region; shikimate kinase; cytidylate kinase complement(1136236..1136934) Desulfovibrio vulgaris RCH1 12869351 YP_005701751.1 CDS Deval_0949 NC_017310.1 1136927 1138048 R KEGG: dde:Dde_1453 histidinol phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase complement(1136927..1138048) Desulfovibrio vulgaris RCH1 12869352 YP_005701752.1 CDS Deval_0950 NC_017310.1 1138315 1138758 R PFAM: UspA domain-containing protein; KEGG: dds:Ddes_0762 UspA domain protein; UspA domain-containing protein complement(1138315..1138758) Desulfovibrio vulgaris RCH1 12869353 YP_005701753.1 CDS Deval_0951 NC_017310.1 1139019 1139528 D KEGG: dde:Dde_1455 hypothetical protein; hypothetical protein 1139019..1139528 Desulfovibrio vulgaris RCH1 12869354 YP_005701754.1 CDS Deval_0952 NC_017310.1 1139961 1140455 R PFAM: CinA domain protein; KEGG: cvi:CV_2370 CinA-related protein; CinA domain-containing protein complement(1139961..1140455) Desulfovibrio vulgaris RCH1 12869355 YP_005701755.1 CDS Deval_0953 NC_017310.1 1140663 1141448 D KEGG: dsa:Desal_2044 hypothetical protein; hypothetical protein 1140663..1141448 Desulfovibrio vulgaris RCH1 12869356 YP_005701756.1 CDS Deval_0954 NC_017310.1 1141445 1142512 D KEGG: dde:Dde_1461 glucokinase; PFAM: Glucokinase; glucokinase 1141445..1142512 Desulfovibrio vulgaris RCH1 12869357 YP_005701757.1 CDS Deval_0955 NC_017310.1 1142509 1143393 D PFAM: SNARE associated Golgi protein; KEGG: amc:MADE_01787 mercuric reductase (Hg(II) reductase); hypothetical protein 1142509..1143393 Desulfovibrio vulgaris RCH1 12869358 YP_005701758.1 CDS Deval_0956 NC_017310.1 1143424 1144866 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1463 mercuric reductase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1143424..1144866 Desulfovibrio vulgaris RCH1 12869359 YP_005701759.1 CDS Deval_0957 NC_017310.1 1144969 1145718 R TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: dde:Dde_1465 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(1144969..1145718) Desulfovibrio vulgaris RCH1 12869360 YP_005701760.1 CDS Deval_0958 NC_017310.1 1145715 1146356 R KEGG: dde:Dde_1466 putative lipoprotein; putative lipoprotein complement(1145715..1146356) Desulfovibrio vulgaris RCH1 12869361 YP_005701761.1 CDS Deval_0959 NC_017310.1 1146356 1146964 R KEGG: dde:Dde_1467 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(1146356..1146964) Desulfovibrio vulgaris RCH1 12869362 YP_005701762.1 CDS Deval_0960 NC_017310.1 1146981 1148216 R KEGG: dds:Ddes_1808 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC complement(1146981..1148216) Desulfovibrio vulgaris RCH1 12869363 YP_005701763.1 CDS Deval_0961 NC_017310.1 1148213 1148581 R KEGG: dde:Dde_1469 twin-arginine translocation protein TatB; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein subunit TatB complement(1148213..1148581) Desulfovibrio vulgaris RCH1 12869364 YP_005701764.1 CDS Deval_0962 NC_017310.1 1148618 1150165 R KEGG: dds:Ddes_1806 GMP synthase, large subunit; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; GMP synthase large subunit complement(1148618..1150165) Desulfovibrio vulgaris RCH1 12869365 YP_005701765.1 CDS Deval_0963 NC_017310.1 1150203 1151660 R SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: dds:Ddes_1805 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; inosine-5'-monophosphate dehydrogenase complement(1150203..1151660) Desulfovibrio vulgaris RCH1 12869366 YP_005701766.1 CDS Deval_0964 NC_017310.1 1151920 1152516 R KEGG: dde:Dde_1473 TPR repeat-containing protein; hypothetical protein complement(1151920..1152516) Desulfovibrio vulgaris RCH1 12869367 YP_005701767.1 CDS Deval_0965 NC_017310.1 1152509 1152646 R KEGG: dba:Dbac_2504 hypothetical protein; hypothetical protein complement(1152509..1152646) Desulfovibrio vulgaris RCH1 12869368 YP_005701768.1 CDS Deval_0966 NC_017310.1 1152656 1153330 R PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC; cytochrome c assembly protein complement(1152656..1153330) Desulfovibrio vulgaris RCH1 12869369 YP_005701769.1 CDS Deval_0967 NC_017310.1 1153382 1154059 R PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dde:Dde_1475 cytochrome c-type biogenesis protein CcmB; cytochrome c-type biogenesis protein CcmB complement(1153382..1154059) Desulfovibrio vulgaris RCH1 12869370 YP_005701770.1 CDS Deval_0968 NC_017310.1 1154053 1154703 R KEGG: dde:Dde_1476 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1154053..1154703) Desulfovibrio vulgaris RCH1 12869371 YP_005701771.1 CDS Deval_0969 NC_017310.1 1154703 1156598 R PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein complement(1154703..1156598) Desulfovibrio vulgaris RCH1 12869372 YP_005701772.1 CDS Deval_0970 NC_017310.1 1156686 1157099 R KEGG: dde:Dde_1478 cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE complement(1156686..1157099) Desulfovibrio vulgaris RCH1 12869373 YP_005701773.1 CDS Deval_0971 NC_017310.1 1157237 1158271 R PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dde:Dde_1479 CBS; hypothetical protein complement(1157237..1158271) Desulfovibrio vulgaris RCH1 12869374 YP_005701774.1 CDS Deval_0972 NC_017310.1 1158467 1159105 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dde:Dde_1481 HAD family hydrolase; histidinol-phosphate phosphatase family protein 1158467..1159105 Desulfovibrio vulgaris RCH1 12869375 YP_005701775.1 CDS Deval_0973 NC_017310.1 1159105 1160376 D PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1482 heptosyltransferase family protein; glycosyl transferase family protein 1159105..1160376 Desulfovibrio vulgaris RCH1 12869376 YP_005701776.1 CDS Deval_0974 NC_017310.1 1160871 1161692 R KEGG: dde:Dde_1193 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1160871..1161692) Desulfovibrio vulgaris RCH1 12869377 YP_005701777.1 CDS Deval_0975 NC_017310.1 1161689 1162459 R KEGG: dsa:Desal_3207 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; cobalt ABC transporter permease complement(1161689..1162459) Desulfovibrio vulgaris RCH1 12869378 YP_005701778.1 CDS Deval_0976 NC_017310.1 1162462 1163076 R PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dba:Dbac_3138 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis protein CbiM complement(1162462..1163076) Desulfovibrio vulgaris RCH1 12869379 YP_005701779.1 CDS Deval_0977 NC_017310.1 1163296 1164468 R PFAM: aminotransferase class I and II; KEGG: dde:Dde_1401 L-threonine O-3-phosphate decarboxylase; class I and II aminotransferase complement(1163296..1164468) Desulfovibrio vulgaris RCH1 12869380 YP_005701780.1 CDS Deval_0978 NC_017310.1 1164465 1165568 R PFAM: glycosyl transferase group 1; KEGG: lip:LI0444 glycosyltransferase; group 1 glycosyl transferase complement(1164465..1165568) Desulfovibrio vulgaris RCH1 12869381 YP_005701781.1 CDS Deval_0979 NC_017310.1 1165578 1166639 R PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase; group 1 glycosyl transferase complement(1165578..1166639) Desulfovibrio vulgaris RCH1 12869382 YP_005701782.1 CDS Deval_0980 NC_017310.1 1166765 1167535 R PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dde:Dde_1404 NCAIR mutase (PurE)-related proteins-like; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase complement(1166765..1167535) Desulfovibrio vulgaris RCH1 12869383 YP_005701783.1 CDS Deval_0981 NC_017310.1 1167685 1169118 D KEGG: dde:Dde_1405 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: AAA ATPase; response regulator receiver; two component Fis family sigma54-specific transcriptional regulator 1167685..1169118 Desulfovibrio vulgaris RCH1 12869384 YP_005701784.1 CDS Deval_0982 NC_017310.1 1169466 1171394 D KEGG: dde:Dde_1406 aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain-containing protein; aconitate hydratase 1169466..1171394 Desulfovibrio vulgaris RCH1 12869385 YP_005701785.1 CDS Deval_0983 NC_017310.1 1171422 1173311 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein; PpiC-type peptidyl-prolyl cis-trans isomerase 1171422..1173311 Desulfovibrio vulgaris RCH1 12869386 YP_005701786.1 CDS Deval_0984 NC_017310.1 1173731 1174222 D KEGG: dsa:Desal_2452 xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; xanthine phosphoribosyltransferase 1173731..1174222 Desulfovibrio vulgaris RCH1 12869387 YP_005701787.1 CDS Deval_0985 NC_017310.1 1174308 1175456 D PFAM: basic membrane lipoprotein; KEGG: dde:Dde_1507 Bmp family membrane protein; basic membrane lipoprotein 1174308..1175456 Desulfovibrio vulgaris RCH1 12869388 YP_005701788.1 CDS Deval_0986 NC_017310.1 1175482 1176546 D PFAM: inner-membrane translocator; KEGG: dde:Dde_1508 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 1175482..1176546 Desulfovibrio vulgaris RCH1 12869389 YP_005701789.1 CDS Deval_0987 NC_017310.1 1176543 1177463 D PFAM: inner-membrane translocator; KEGG: dde:Dde_1509 branched chain amino acid ABC transporter, permease protein; inner-membrane translocator 1176543..1177463 Desulfovibrio vulgaris RCH1 12869390 YP_005701790.1 CDS Deval_0988 NC_017310.1 1177468 1179042 D KEGG: dde:Dde_1510 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1177468..1179042 Desulfovibrio vulgaris RCH1 12869391 YP_005701791.1 CDS Deval_0989 NC_017310.1 1179471 1180061 R KEGG: dde:Dde_2401 hypothetical protein; hypothetical protein complement(1179471..1180061) Desulfovibrio vulgaris RCH1 12869392 YP_005701792.1 CDS Deval_0990 NC_017310.1 1180123 1180785 R KEGG: dma:DMR_22260 hypothetical protein; hypothetical protein complement(1180123..1180785) Desulfovibrio vulgaris RCH1 12869393 YP_005701793.1 CDS Deval_0991 NC_017310.1 1180981 1181907 D KEGG: dde:Dde_2398 hypothetical protein; hypothetical protein 1180981..1181907 Desulfovibrio vulgaris RCH1 12869394 YP_005701794.1 CDS Deval_0992 NC_017310.1 1182111 1182245 D KEGG: dds:Ddes_1970 ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; 50S ribosomal protein L34 1182111..1182245 Desulfovibrio vulgaris RCH1 12869395 YP_005701795.1 CDS Deval_0993 NC_017310.1 1182233 1182622 D manually curated; TIGRFAM: ribonuclease P protein component; KEGG: dde:Dde_2396 ribonuclease P protein component; PFAM: ribonuclease P protein; ribonuclease P protein component 1182233..1182622 Desulfovibrio vulgaris RCH1 12869396 YP_005701796.1 CDS Deval_0994 NC_017310.1 1182619 1182879 D PFAM: protein of unknown function DUF37; KEGG: dds:Ddes_1968 protein of unknown function DUF37; hypothetical protein 1182619..1182879 Desulfovibrio vulgaris RCH1 12869397 YP_005701797.1 CDS Deval_0995 NC_017310.1 1182887 1184491 D KEGG: dde:Dde_2394 protein translocase subunit YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60 kDa inner membrane insertion protein; YidC/Oxa1 family membrane protein insertase 1182887..1184491 Desulfovibrio vulgaris RCH1 12869398 YP_005701798.1 CDS Deval_0996 NC_017310.1 1184530 1185822 D KEGG: dde:Dde_2393 single-stranded nucleic acid binding R3H; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein; single-stranded nucleic acid binding R3H domain-containing protein 1184530..1185822 Desulfovibrio vulgaris RCH1 12869399 YP_005701799.1 CDS Deval_0997 NC_017310.1 1185896 1187269 D KEGG: dde:Dde_2392 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; tRNA modification GTPase TrmE 1185896..1187269 Desulfovibrio vulgaris RCH1 12869400 YP_005701800.1 CDS Deval_0998 NC_017310.1 1187444 1188130 D PFAM: nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like; nitrite and sulfite reductase 4Fe-4S region 1187444..1188130 Desulfovibrio vulgaris RCH1 12869401 YP_005701801.1 CDS Deval_0999 NC_017310.1 1188127 1189746 D KEGG: dde:Dde_2389 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 1188127..1189746 Desulfovibrio vulgaris RCH1 12869402 YP_005701802.1 CDS Deval_1000 NC_017310.1 1189866 1190471 D KEGG: dde:Dde_2388 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; 3'-5' exonuclease 1189866..1190471 Desulfovibrio vulgaris RCH1 12869403 YP_005701803.1 CDS Deval_1001 NC_017310.1 1190645 1191334 D KEGG: dde:Dde_2387 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator 1190645..1191334 Desulfovibrio vulgaris RCH1 12869404 YP_005701804.1 CDS Deval_1002 NC_017310.1 1191362 1192129 D TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dde:Dde_2386 phosphate transporter ATP-binding protein; SMART: AAA ATPase; phosphate ABC transporter ATPase 1191362..1192129 Desulfovibrio vulgaris RCH1 12869405 YP_005701805.1 CDS Deval_1003 NC_017310.1 1192138 1192803 D KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 1192138..1192803 Desulfovibrio vulgaris RCH1 12869406 YP_005701806.1 CDS Deval_1004 NC_017310.1 1193147 1193710 D KEGG: dsa:Desal_3085 hypothetical protein; hypothetical protein 1193147..1193710 Desulfovibrio vulgaris RCH1 12869407 YP_005701807.1 CDS Deval_1005 NC_017310.1 1193714 1194916 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: dds:Ddes_1963 protein of unknown function UPF0052 and CofD; hypothetical protein 1193714..1194916 Desulfovibrio vulgaris RCH1 12869408 YP_005701808.1 CDS Deval_1006 NC_017310.1 1195296 1197935 R KEGG: dde:Dde_2374 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; alanyl-tRNA synthetase complement(1195296..1197935) Desulfovibrio vulgaris RCH1 12869409 YP_005701809.1 CDS Deval_1007 NC_017310.1 1198014 1199087 R TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: dde:Dde_2373 recombinase A; SMART: AAA ATPase; recA protein complement(1198014..1199087) Desulfovibrio vulgaris RCH1 12869410 YP_005701810.1 CDS Deval_1008 NC_017310.1 1199376 1200482 D PFAM: Thiamine biosynthesis protein-like; protein of unknown function DUF814; KEGG: dde:Dde_2372 hypothetical protein; Thiamine biosynthesis protein-like protein 1199376..1200482 Desulfovibrio vulgaris RCH1 12869411 YP_005701811.1 CDS Deval_1009 NC_017310.1 1200700 1202061 D PFAM: sodium:neurotransmitter symporter; KEGG: dde:Dde_2371 sodium-dependent symporter family protein; sodium:neurotransmitter symporter 1200700..1202061 Desulfovibrio vulgaris RCH1 12869412 YP_005701812.1 CDS Deval_1010 NC_017310.1 1202251 1202781 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_2471 HAD family hydrolase; haloacid dehalogenase domain-containing protein hydrolase complement(1202251..1202781) Desulfovibrio vulgaris RCH1 12869413 YP_005701813.1 CDS Deval_1011 NC_017310.1 1202914 1204296 R KEGG: dde:Dde_2530 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; argininosuccinate lyase complement(1202914..1204296) Desulfovibrio vulgaris RCH1 12869414 YP_005701814.1 CDS Deval_1012 NC_017310.1 1204300 1205490 R TIGRFAM: argininosuccinate synthase; KEGG: dde:Dde_2531 argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase complement(1204300..1205490) Desulfovibrio vulgaris RCH1 12869415 YP_005701815.1 CDS Deval_1013 NC_017310.1 1205542 1206444 R TIGRFAM: ornithine carbamoyltransferase; KEGG: dde:Dde_2532 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; ornithine carbamoyltransferase complement(1205542..1206444) Desulfovibrio vulgaris RCH1 12869416 YP_005701816.1 CDS Deval_1014 NC_017310.1 1206592 1207335 D PFAM: ApbE family lipoprotein; KEGG: dde:Dde_2535 hypothetical protein; ApbE family lipoprotein 1206592..1207335 Desulfovibrio vulgaris RCH1 12869417 YP_005701817.1 CDS Deval_1015 NC_017310.1 1207755 1208498 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dma:DMR_29400 hypothetical protein; DNA methylase N-4/N-6 domain-containing protein complement(1207755..1208498) Desulfovibrio vulgaris RCH1 12869419 YP_005701818.1 CDS Deval_1016 NC_017310.1 1208476 1208670 R manually curated; KEGG: bcm:Bcenmc03_0187 hypothetical protein; hypothetical protein complement(1208476..1208670) Desulfovibrio vulgaris RCH1 12869420 YP_005701819.1 CDS Deval_1017 NC_017310.1 1208928 1209374 R KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein complement(1208928..1209374) Desulfovibrio vulgaris RCH1 12869421 YP_005701820.1 CDS Deval_1018 NC_017310.1 1209388 1210905 R KEGG: dde:Dde_3393 tail fiber protein, putative; tail fiber protein, putative complement(1209388..1210905) Desulfovibrio vulgaris RCH1 12869422 YP_005701821.1 CDS Deval_1019 NC_017310.1 1210907 1211563 R KEGG: dde:Dde_3392 hypothetical protein; hypothetical protein complement(1210907..1211563) Desulfovibrio vulgaris RCH1 12869423 YP_005701822.1 CDS Deval_1020 NC_017310.1 1211564 1211716 R KEGG: isc:IscW_ISCW004690 hypothetical protein; hypothetical protein complement(1211564..1211716) Desulfovibrio vulgaris RCH1 12869424 YP_005701823.1 CDS Deval_1021 NC_017310.1 1211718 1212899 R PFAM: Baseplate J family protein; KEGG: dde:Dde_3391 baseplate assembly protein, putative; baseplate J family protein complement(1211718..1212899) Desulfovibrio vulgaris RCH1 12869425 YP_005701824.1 CDS Deval_1022 NC_017310.1 1212877 1213311 R KEGG: gem:GM21_3653 baseplate assembly protein, putative; baseplate assembly protein, putative complement(1212877..1213311) Desulfovibrio vulgaris RCH1 12869426 YP_005701825.1 CDS Deval_1023 NC_017310.1 1213308 1214039 R KEGG: dde:Dde_3389 baseplate assembly protein, putative; baseplate assembly protein, putative complement(1213308..1214039) Desulfovibrio vulgaris RCH1 12869427 YP_005701826.1 CDS Deval_1024 NC_017310.1 1214026 1214826 R KEGG: dde:Dde_3388 hypothetical protein; hypothetical protein complement(1214026..1214826) Desulfovibrio vulgaris RCH1 12869428 YP_005701827.1 CDS Deval_1025 NC_017310.1 1214972 1215523 R KEGG: dde:Dde_3387 hypothetical protein; hypothetical protein complement(1214972..1215523) Desulfovibrio vulgaris RCH1 12869429 YP_005701828.1 CDS Deval_1026 NC_017310.1 1215520 1217862 R KEGG: rce:RC1_1127 phage tail tape measure protein, TP901 family, core region; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, TP901 family complement(1215520..1217862) Desulfovibrio vulgaris RCH1 12869430 YP_005701829.1 CDS Deval_1027 NC_017310.1 1218063 1218395 R KEGG: zro:ZYRO0B03740g hypothetical protein; hypothetical protein complement(1218063..1218395) Desulfovibrio vulgaris RCH1 12869431 YP_005701830.1 CDS Deval_1028 NC_017310.1 1218628 1219650 D KEGG: rpi:Rpic_0439 ATPase; ATPase 1218628..1219650 Desulfovibrio vulgaris RCH1 12869432 YP_005701831.1 CDS Deval_1029 NC_017310.1 1219710 1220156 R KEGG: gem:GM21_3661 hypothetical protein; hypothetical protein complement(1219710..1220156) Desulfovibrio vulgaris RCH1 12869433 YP_005701832.1 CDS Deval_1030 NC_017310.1 1220169 1221854 R KEGG: gem:GM21_3662 hypothetical protein; hypothetical protein complement(1220169..1221854) Desulfovibrio vulgaris RCH1 12869434 YP_005701833.1 CDS Deval_1031 NC_017310.1 1221864 1222244 R KEGG: gem:GM21_3663 hypothetical protein; hypothetical protein complement(1221864..1222244) Desulfovibrio vulgaris RCH1 12869435 YP_005701834.1 CDS Deval_1032 NC_017310.1 1222246 1222782 R KEGG: dde:Dde_3380 hypothetical protein; hypothetical protein complement(1222246..1222782) Desulfovibrio vulgaris RCH1 12869436 YP_005701835.1 CDS Deval_1033 NC_017310.1 1222797 1223237 R TIGRFAM: phage virion morphogenesis protein; KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein; phage virion morphogenesis protein complement(1222797..1223237) Desulfovibrio vulgaris RCH1 12869437 YP_005701836.1 CDS Deval_1034 NC_017310.1 1223237 1223668 R PFAM: protein of unknown function DUF1320; KEGG: dde:Dde_3378 hypothetical protein; hypothetical protein complement(1223237..1223668) Desulfovibrio vulgaris RCH1 12869438 YP_005701837.1 CDS Deval_1035 NC_017310.1 1223949 1224944 R KEGG: dap:Dacet_2234 hypothetical protein; hypothetical protein complement(1223949..1224944) Desulfovibrio vulgaris RCH1 12869439 YP_005701838.1 CDS Deval_1036 NC_017310.1 1224953 1225300 R KEGG: dap:Dacet_2233 hypothetical protein; hypothetical protein complement(1224953..1225300) Desulfovibrio vulgaris RCH1 12869440 YP_005701839.1 CDS Deval_1037 NC_017310.1 1225316 1226266 R KEGG: dde:Dde_3375 hypothetical protein; hypothetical protein complement(1225316..1226266) Desulfovibrio vulgaris RCH1 12869441 YP_005701840.1 CDS Deval_1038 NC_017310.1 1226456 1227757 R KEGG: dde:Dde_3374 phage putative head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; phage head morphogenesis protein complement(1226456..1227757) Desulfovibrio vulgaris RCH1 12869442 YP_005701841.1 CDS Deval_1039 NC_017310.1 1227757 1229349 R PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein; hypothetical protein complement(1227757..1229349) Desulfovibrio vulgaris RCH1 12869443 YP_005701842.1 CDS Deval_1040 NC_017310.1 1229434 1230054 R KEGG: hypothetical protein; hypothetical protein complement(1229434..1230054) Desulfovibrio vulgaris RCH1 12869444 YP_005701843.1 CDS Deval_1041 NC_017310.1 1230114 1231598 R KEGG: dde:Dde_3372 portal protein, putative; portal protein, putative complement(1230114..1231598) Desulfovibrio vulgaris RCH1 12869445 YP_005701844.1 CDS Deval_1042 NC_017310.1 1231649 1232245 R KEGG: dde:Dde_3371 hypothetical protein; hypothetical protein complement(1231649..1232245) Desulfovibrio vulgaris RCH1 12869446 YP_005701845.1 CDS Deval_1043 NC_017310.1 1232257 1232499 R KEGG: sma:SAV_3771 hypothetical protein; hypothetical protein complement(1232257..1232499) Desulfovibrio vulgaris RCH1 12869447 YP_005701846.1 CDS Deval_1044 NC_017310.1 1232496 1232969 R KEGG: gem:GM21_3675 hypothetical protein; hypothetical protein complement(1232496..1232969) Desulfovibrio vulgaris RCH1 12869448 YP_005701847.1 CDS Deval_1045 NC_017310.1 1232966 1233271 R KEGG: spo:SPCC895.05 formin For3; hypothetical protein complement(1232966..1233271) Desulfovibrio vulgaris RCH1 12869449 YP_005701848.1 CDS Deval_1046 NC_017310.1 1233225 1233638 R KEGG: met:M446_6666 peptidase C14 caspase catalytic subunit P20; hypothetical protein complement(1233225..1233638) Desulfovibrio vulgaris RCH1 12869450 YP_005701849.1 CDS Deval_1047 NC_017310.1 1233631 1234296 R PFAM: Lytic transglycosylase catalytic; KEGG: lip:LIC036 putative lytic murein transglycosylase precursor; lytic transglycosylase complement(1233631..1234296) Desulfovibrio vulgaris RCH1 12869451 YP_005701850.1 CDS Deval_1048 NC_017310.1 1234296 1234664 R KEGG: bbr:BB3639 phage-related membrane protein; phage-related membrane protein complement(1234296..1234664) Desulfovibrio vulgaris RCH1 12869452 YP_005701851.1 CDS Deval_1049 NC_017310.1 1234738 1235202 R KEGG: dde:Dde_3360 DNA-binding protein; DNA-binding protein complement(1234738..1235202) Desulfovibrio vulgaris RCH1 12869453 YP_005701852.1 CDS Deval_1050 NC_017310.1 1235186 1235551 R KEGG: dde:Dde_3359 hypothetical protein; hypothetical protein complement(1235186..1235551) Desulfovibrio vulgaris RCH1 12869454 YP_005701853.1 CDS Deval_1051 NC_017310.1 1235548 1236024 R KEGG: dde:Dde_3358 hypothetical protein; hypothetical protein complement(1235548..1236024) Desulfovibrio vulgaris RCH1 12869455 YP_005701854.1 CDS Deval_1052 NC_017310.1 1236021 1236479 R KEGG: dde:Dde_3357 hypothetical protein; hypothetical protein complement(1236021..1236479) Desulfovibrio vulgaris RCH1 12869456 YP_005701855.1 CDS Deval_1053 NC_017310.1 1236561 1236848 R KEGG: eli:ELI_12475 integration host factor beta-subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(1236561..1236848) Desulfovibrio vulgaris RCH1 12869457 YP_005701856.1 CDS Deval_1054 NC_017310.1 1236862 1237101 R KEGG: tcu:Tcur_3108 NAD+ synthetase; hypothetical protein complement(1236862..1237101) Desulfovibrio vulgaris RCH1 12869458 YP_005701857.1 CDS Deval_1055 NC_017310.1 1237119 1237631 R KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative; host-nuclease inhibitor protein Gam complement(1237119..1237631) Desulfovibrio vulgaris RCH1 12869459 YP_005701858.1 CDS Deval_1056 NC_017310.1 1237633 1237821 R hypothetical protein complement(1237633..1237821) Desulfovibrio vulgaris RCH1 12869460 YP_005701859.1 CDS Deval_1057 NC_017310.1 1237824 1238456 R KEGG: dma:DMR_14510 hypothetical protein; hypothetical protein complement(1237824..1238456) Desulfovibrio vulgaris RCH1 12869461 YP_005701860.1 CDS Deval_1058 NC_017310.1 1238449 1239186 R SMART: AAA ATPase; KEGG: dma:DMR_14500 hypothetical protein; AAA ATPase complement(1238449..1239186) Desulfovibrio vulgaris RCH1 12869462 YP_005701861.1 CDS Deval_1059 NC_017310.1 1239183 1241336 R PFAM: Transposase-like Mu ; Integrase catalytic region; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative; transposase-like Mu complement(1239183..1241336) Desulfovibrio vulgaris RCH1 12869463 YP_005701862.1 CDS Deval_1060 NC_017310.1 1241560 1242048 R KEGG: mmi:MMAR_2197 secreted protein; hypothetical protein complement(1241560..1242048) Desulfovibrio vulgaris RCH1 12869464 YP_005701863.1 CDS Deval_1061 NC_017310.1 1242048 1242317 R KEGG: dde:Dde_3348 hypothetical protein; hypothetical protein complement(1242048..1242317) Desulfovibrio vulgaris RCH1 12869465 YP_005701864.1 CDS Deval_1062 NC_017310.1 1242314 1242739 R KEGG: dde:Dde_3347 hypothetical protein; hypothetical protein complement(1242314..1242739) Desulfovibrio vulgaris RCH1 12869466 YP_005701865.1 CDS Deval_1063 NC_017310.1 1243001 1243768 D PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dds:Ddes_0819 putative phage repressor; putative phage repressor 1243001..1243768 Desulfovibrio vulgaris RCH1 12869467 YP_005701866.1 CDS Deval_1065 NC_017310.1 1245354 1246733 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: dat:HRM2_29880 AlgI2; membrane bound O-acyl transferase MBOAT family protein 1245354..1246733 Desulfovibrio vulgaris RCH1 12867525 YP_005701867.1 CDS Deval_1066 NC_017310.1 1246759 1247781 D KEGG: sli:Slin_5462 hypothetical protein; hypothetical protein 1246759..1247781 Desulfovibrio vulgaris RCH1 12867526 YP_005701868.1 CDS Deval_1068 NC_017310.1 1248708 1249121 D manually curated; KEGG: ypn:YPN_0261 hypothetical protein; hypothetical protein 1248708..1249121 Desulfovibrio vulgaris RCH1 12867528 YP_005701869.1 CDS Deval_1069 NC_017310.1 1249395 1250222 D PFAM: protein of unknown function DUF1555; KEGG: ppd:Ppro_2434 hypothetical protein; hypothetical protein 1249395..1250222 Desulfovibrio vulgaris RCH1 12867529 YP_005701870.1 CDS Deval_1070 NC_017310.1 1250888 1252327 R KEGG: two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(1250888..1252327) Desulfovibrio vulgaris RCH1 12867530 YP_005701871.1 CDS Deval_1071 NC_017310.1 1252324 1255581 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; KEGG: rpa:RPA1249 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; multi-sensor signal transduction histidine kinase complement(1252324..1255581) Desulfovibrio vulgaris RCH1 12867531 YP_005701872.1 CDS Deval_1073 NC_017310.1 1256656 1257669 R PFAM: Urea transporter; KEGG: har:HEAR1518 putative UreA transporter; Urea transporter complement(1256656..1257669) Desulfovibrio vulgaris RCH1 12867533 YP_005701873.1 CDS Deval_1074 NC_017310.1 1257706 1257936 R KEGG: dat:HRM2_02720 hypothetical protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; FmdB family regulatory protein complement(1257706..1257936) Desulfovibrio vulgaris RCH1 12867534 YP_005701874.1 CDS Deval_1075 NC_017310.1 1257923 1258114 R hypothetical protein complement(1257923..1258114) Desulfovibrio vulgaris RCH1 12867535 YP_005701875.1 CDS Deval_1076 NC_017310.1 1258257 1259531 R PFAM: major facilitator superfamily MFS_1; KEGG: bpf:BpOF4_00490 hypothetical protein; major facilitator superfamily protein complement(1258257..1259531) Desulfovibrio vulgaris RCH1 12867536 YP_005701876.1 CDS Deval_1077 NC_017310.1 1259651 1260655 R KEGG: hpa:HPAG1_1180 formamidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Formamidase complement(1259651..1260655) Desulfovibrio vulgaris RCH1 12867537 YP_005701877.1 CDS Deval_1078 NC_017310.1 1261327 1262646 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0642 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1261327..1262646 Desulfovibrio vulgaris RCH1 12867538 YP_005701878.1 CDS Deval_1079 NC_017310.1 1263751 1264041 R KEGG: vvi:100255033 hypothetical protein LOC100255033; hypothetical protein complement(1263751..1264041) Desulfovibrio vulgaris RCH1 12867539 YP_005701879.1 CDS Deval_1080 NC_017310.1 1264038 1264379 R KEGG: stp:Strop_0250 hypothetical protein; hypothetical protein complement(1264038..1264379) Desulfovibrio vulgaris RCH1 12867540 YP_005701880.1 CDS Deval_1081 NC_017310.1 1264552 1266966 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold domain protein; KEGG: dsa:Desal_1013 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(1264552..1266966) Desulfovibrio vulgaris RCH1 12867541 YP_005701881.1 CDS Deval_1082 NC_017310.1 1267278 1267544 R KEGG: dde:Dde_2470 hypothetical protein; hypothetical protein complement(1267278..1267544) Desulfovibrio vulgaris RCH1 12867542 YP_005701882.1 CDS Deval_1083 NC_017310.1 1268045 1269628 D KEGG: dde:Dde_2468 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein MviN 1268045..1269628 Desulfovibrio vulgaris RCH1 12867543 YP_005701883.1 CDS Deval_1084 NC_017310.1 1269963 1270340 R KEGG: dds:Ddes_1272 hypothetical protein; hypothetical protein complement(1269963..1270340) Desulfovibrio vulgaris RCH1 12867544 YP_005701884.1 CDS Deval_1085 NC_017310.1 1270377 1270814 R manually curated; KEGG: dde:Dde_2463 hypothetical protein; hypothetical protein complement(1270377..1270814) Desulfovibrio vulgaris RCH1 12867545 YP_005701885.1 CDS Deval_1086 NC_017310.1 1270996 1271553 D KEGG: dde:Dde_2462 hypothetical protein; hypothetical protein 1270996..1271553 Desulfovibrio vulgaris RCH1 12867546 YP_005701886.1 CDS Deval_1087 NC_017310.1 1271877 1272494 R KEGG: dde:Dde_2461 hypothetical protein; hypothetical protein complement(1271877..1272494) Desulfovibrio vulgaris RCH1 12867547 YP_005701887.1 CDS Deval_1088 NC_017310.1 1272694 1274424 D PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2460 aldehyde:ferredoxin oxidoreductase, tungsten-containing; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 1272694..1274424 Desulfovibrio vulgaris RCH1 12867548 YP_005701888.1 CDS Deval_1089 NC_017310.1 1274651 1274875 R PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein; sulfur carrier protein ThiS complement(1274651..1274875) Desulfovibrio vulgaris RCH1 12867549 YP_005701889.1 CDS Deval_1090 NC_017310.1 1274889 1275974 R TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2457 metal dependent phosphohydrolase; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; response regulator receiver modulated metal dependent phosphohydrolase complement(1274889..1275974) Desulfovibrio vulgaris RCH1 12867550 YP_005701890.1 CDS Deval_1091 NC_017310.1 1276008 1276907 R SMART: PAS domain containing protein; KEGG: dde:Dde_2456 putative PAS/PAC sensor protein; PAS domain containing protein complement(1276008..1276907) Desulfovibrio vulgaris RCH1 12867551 YP_005701891.1 CDS Deval_1092 NC_017310.1 1276904 1278151 R KEGG: dde:Dde_2455 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(1276904..1278151) Desulfovibrio vulgaris RCH1 12867552 YP_005701892.1 CDS Deval_1093 NC_017310.1 1278322 1278801 D PFAM: Colicin V production protein; KEGG: dde:Dde_2454 colicin V production family protein; colicin V production protein 1278322..1278801 Desulfovibrio vulgaris RCH1 12867553 YP_005701893.1 CDS Deval_1094 NC_017310.1 1278829 1279632 D KEGG: dde:Dde_2453 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; MazG family protein 1278829..1279632 Desulfovibrio vulgaris RCH1 12867554 YP_005701894.1 CDS Deval_1095 NC_017310.1 1279593 1280573 D KEGG: dde:Dde_2452 hypothetical protein; hypothetical protein 1279593..1280573 Desulfovibrio vulgaris RCH1 12867555 YP_005701895.1 CDS Deval_1096 NC_017310.1 1280660 1280842 D KEGG: dde:Dde_2449 hypothetical protein; hypothetical protein 1280660..1280842 Desulfovibrio vulgaris RCH1 12867556 YP_005701896.1 CDS Deval_1097 NC_017310.1 1280869 1282038 D PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein; hypothetical protein 1280869..1282038 Desulfovibrio vulgaris RCH1 12867557 YP_005701897.1 CDS Deval_1098 NC_017310.1 1282268 1285048 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; GAF domain protein; KEGG: dde:Dde_2447 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; GAF domain protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1282268..1285048 Desulfovibrio vulgaris RCH1 12867558 YP_005701898.1 CDS Deval_1099 NC_017310.1 1285437 1288007 R SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: dde:Dde_2444 Lon-A peptidase; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATP-dependent protease La complement(1285437..1288007) Desulfovibrio vulgaris RCH1 12867559 YP_005701899.1 CDS Deval_1100 NC_017310.1 1288004 1288306 R PFAM: acylphosphatase; KEGG: srm:SRM_02285 acylphosphatase; acylphosphatase complement(1288004..1288306) Desulfovibrio vulgaris RCH1 12867560 YP_005701900.1 CDS Deval_1101 NC_017310.1 1288315 1288992 R KEGG: dde:Dde_2442 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein RadC complement(1288315..1288992) Desulfovibrio vulgaris RCH1 12867561 YP_005701901.1 CDS Deval_1102 NC_017310.1 1289028 1290017 R PFAM: DNA polymerase III delta; KEGG: dde:Dde_2441 hypothetical protein; DNA polymerase III subunit delta complement(1289028..1290017) Desulfovibrio vulgaris RCH1 12867562 YP_005701902.1 CDS Deval_1103 NC_017310.1 1290100 1290618 R KEGG: lip:LI0151 hypothetical protein; hypothetical protein complement(1290100..1290618) Desulfovibrio vulgaris RCH1 12867563 YP_005701903.1 CDS Deval_1104 NC_017310.1 1290602 1293091 R KEGG: dde:Dde_2439 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(1290602..1293091) Desulfovibrio vulgaris RCH1 12867564 YP_005701904.1 CDS Deval_1105 NC_017310.1 1293134 1293595 R KEGG: dde:Dde_2438 transcription antitermination factor NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor complement(1293134..1293595) Desulfovibrio vulgaris RCH1 12867565 YP_005701905.1 CDS Deval_1106 NC_017310.1 1293599 1294069 R KEGG: dde:Dde_2437 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase complement(1293599..1294069) Desulfovibrio vulgaris RCH1 12867566 YP_005701906.1 CDS Deval_1107 NC_017310.1 1294201 1295430 R KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; GTP cyclohydrolase II complement(1294201..1295430) Desulfovibrio vulgaris RCH1 12867567 YP_005701907.1 CDS Deval_1108 NC_017310.1 1295462 1296124 R TIGRFAM: riboflavin synthase, alpha subunit; KEGG: dde:Dde_2435 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha complement(1295462..1296124) Desulfovibrio vulgaris RCH1 12867568 YP_005701908.1 CDS Deval_1109 NC_017310.1 1296130 1297263 R KEGG: dde:Dde_2434 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD complement(1296130..1297263) Desulfovibrio vulgaris RCH1 12867569 YP_005701909.1 CDS Deval_1110 NC_017310.1 1297266 1297796 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_2433 cytidine/deoxycytidylate deaminase family protein; CMP/dCMP deaminase zinc-binding protein complement(1297266..1297796) Desulfovibrio vulgaris RCH1 12867570 YP_005701910.1 CDS Deval_1111 NC_017310.1 1297862 1299100 R KEGG: dde:Dde_2432 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; glycine hydroxymethyltransferase complement(1297862..1299100) Desulfovibrio vulgaris RCH1 12867571 YP_005701911.1 CDS Deval_1112 NC_017310.1 1299159 1300406 R KEGG: dde:Dde_2431 3-oxoacyl-[acyl-carrier-protein] synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(1299159..1300406) Desulfovibrio vulgaris RCH1 12867572 YP_005701912.1 CDS Deval_1113 NC_017310.1 1300594 1300824 R KEGG: dde:Dde_2430 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; acyl carrier protein complement(1300594..1300824) Desulfovibrio vulgaris RCH1 12867573 YP_005701913.1 CDS Deval_1114 NC_017310.1 1300881 1301660 R KEGG: dde:Dde_2429 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase complement(1300881..1301660) Desulfovibrio vulgaris RCH1 12867574 YP_005701914.1 CDS Deval_1115 NC_017310.1 1301709 1302701 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: dde:Dde_2428 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III complement(1301709..1302701) Desulfovibrio vulgaris RCH1 12867575 YP_005701915.1 CDS Deval_1116 NC_017310.1 1302758 1303795 R KEGG: dde:Dde_2427 putative glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; fatty acid/phospholipid synthesis protein PlsX complement(1302758..1303795) Desulfovibrio vulgaris RCH1 12867576 YP_005701916.1 CDS Deval_1117 NC_017310.1 1303788 1303967 R KEGG: dds:Ddes_1611 ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; 50S ribosomal protein L32 complement(1303788..1303967) Desulfovibrio vulgaris RCH1 12867577 YP_005701917.1 CDS Deval_1118 NC_017310.1 1304012 1304548 R PFAM: protein of unknown function DUF177; KEGG: dde:Dde_2426 hypothetical protein; hypothetical protein complement(1304012..1304548) Desulfovibrio vulgaris RCH1 12867578 YP_005701918.1 CDS Deval_1119 NC_017310.1 1304751 1304960 D KEGG: dde:Dde_2425 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; 50S ribosomal protein L28 1304751..1304960 Desulfovibrio vulgaris RCH1 12867579 YP_005701919.1 CDS Deval_1120 NC_017310.1 1305267 1305827 D PFAM: FxsA cytoplasmic membrane protein; KEGG: dde:Dde_2422 FxsA protein; FxsA cytoplasmic membrane protein 1305267..1305827 Desulfovibrio vulgaris RCH1 12867580 YP_005701920.1 CDS Deval_1121 NC_017310.1 1305824 1306837 D PFAM: Rhomboid family protein; KEGG: dde:Dde_2421 rhomboid family protein; rhomboid family protein 1305824..1306837 Desulfovibrio vulgaris RCH1 12867581 YP_005701921.1 CDS Deval_1122 NC_017310.1 1307223 1309415 R PFAM: glycosyl transferase family 39; KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; glycosyl transferase family protein complement(1307223..1309415) Desulfovibrio vulgaris RCH1 12867582 YP_005701922.1 CDS Deval_1123 NC_017310.1 1309412 1310068 R KEGG: dde:Dde_2419 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; phosphoesterase PA-phosphatase-like protein complement(1309412..1310068) Desulfovibrio vulgaris RCH1 12867583 YP_005701923.1 CDS Deval_1124 NC_017310.1 1310704 1312113 D KEGG: dde:Dde_2418 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 1310704..1312113 Desulfovibrio vulgaris RCH1 12867584 YP_005701924.1 CDS Deval_1125 NC_017310.1 1312444 1312743 R PFAM: protein of unknown function DUF77; KEGG: drt:Dret_0429 protein of unknown function DUF77; hypothetical protein complement(1312444..1312743) Desulfovibrio vulgaris RCH1 12867585 YP_005701925.1 CDS Deval_1126 NC_017310.1 1312797 1314992 R KEGG: dde:Dde_2414 hypothetical protein; hypothetical protein complement(1312797..1314992) Desulfovibrio vulgaris RCH1 12867586 YP_005701926.1 CDS Deval_1127 NC_017310.1 1315159 1315983 D PFAM: nitroreductase; KEGG: dde:Dde_2413 nitroreductase family protein; nitroreductase 1315159..1315983 Desulfovibrio vulgaris RCH1 12867587 YP_005701927.1 CDS Deval_1128 NC_017310.1 1316206 1316733 D KEGG: dde:Dde_2410 hypothetical protein; hypothetical protein 1316206..1316733 Desulfovibrio vulgaris RCH1 12867588 YP_005701928.1 CDS Deval_1129 NC_017310.1 1316902 1318659 R PFAM: protein of unknown function DUF181; KEGG: dde:Dde_2408 hypothetical protein; hypothetical protein complement(1316902..1318659) Desulfovibrio vulgaris RCH1 12867589 YP_005701929.1 CDS Deval_1130 NC_017310.1 1319188 1320036 D SMART: AP endonuclease family 2; TIGRFAM: apurinic endonuclease Apn1; KEGG: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain-containing protein TIM barrel; apurinic endonuclease Apn1 1319188..1320036 Desulfovibrio vulgaris RCH1 12867590 YP_005701930.1 CDS Deval_1131 NC_017310.1 1320523 1320975 R KEGG: dde:Dde_2314 hypothetical protein; hypothetical protein complement(1320523..1320975) Desulfovibrio vulgaris RCH1 12867591 YP_005701931.1 CDS Deval_1132 NC_017310.1 1321298 1321816 R PFAM: Redoxin domain protein; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin); Redoxin domain-containing protein complement(1321298..1321816) Desulfovibrio vulgaris RCH1 12867592 YP_005701932.1 CDS Deval_1133 NC_017310.1 1322119 1323327 D KEGG: dde:Dde_2311 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; ammonium transporter 1322119..1323327 Desulfovibrio vulgaris RCH1 12867593 YP_005701933.1 CDS Deval_1134 NC_017310.1 1323450 1323788 D PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 1323450..1323788 Desulfovibrio vulgaris RCH1 12867594 YP_005701934.1 CDS Deval_1135 NC_017310.1 1323844 1326564 D PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; KEGG: dde:Dde_2309 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD 1323844..1326564 Desulfovibrio vulgaris RCH1 12867595 YP_005701935.1 CDS Deval_1136 NC_017310.1 1326623 1327366 D PFAM: protein of unknown function DUF81; KEGG: dsa:Desal_0709 protein of unknown function DUF81; hypothetical protein 1326623..1327366 Desulfovibrio vulgaris RCH1 12867596 YP_005701936.1 CDS Deval_1137 NC_017310.1 1327750 1328370 D KEGG: pno:SNOG_08802 hypothetical protein; hypothetical protein 1327750..1328370 Desulfovibrio vulgaris RCH1 12867597 YP_005701937.1 CDS Deval_1138 NC_017310.1 1328750 1329493 R KEGG: dde:Dde_2308 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1328750..1329493) Desulfovibrio vulgaris RCH1 12867598 YP_005701938.1 CDS Deval_1139 NC_017310.1 1329480 1330268 R KEGG: dde:Dde_2307 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(1329480..1330268) Desulfovibrio vulgaris RCH1 12867599 YP_005701939.1 CDS Deval_1140 NC_017310.1 1330357 1331097 R KEGG: dde:Dde_2306 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein complement(1330357..1331097) Desulfovibrio vulgaris RCH1 12867600 YP_005701940.1 CDS Deval_1141 NC_017310.1 1331229 1331831 R PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein; hypothetical protein complement(1331229..1331831) Desulfovibrio vulgaris RCH1 12867601 YP_005701941.1 CDS Deval_1142 NC_017310.1 1331821 1332228 R KEGG: dde:Dde_2304 hypothetical protein; hypothetical protein complement(1331821..1332228) Desulfovibrio vulgaris RCH1 12867602 YP_005701942.1 CDS Deval_1143 NC_017310.1 1332534 1332851 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: dps:DP0971 hypothetical protein; cupin 1332534..1332851 Desulfovibrio vulgaris RCH1 12867603 YP_005701943.1 CDS Deval_1144 NC_017310.1 1332974 1333795 R PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like; VacJ family lipoprotein complement(1332974..1333795) Desulfovibrio vulgaris RCH1 12867604 YP_005701944.1 CDS Deval_1145 NC_017310.1 1333804 1334436 R PFAM: toluene tolerance family protein; KEGG: dds:Ddes_0533 toluene tolerance family protein; toluene tolerance family protein complement(1333804..1334436) Desulfovibrio vulgaris RCH1 12867605 YP_005701945.1 CDS Deval_1146 NC_017310.1 1334440 1334886 R PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein; Mammalian cell entry related domain-containing protein complement(1334440..1334886) Desulfovibrio vulgaris RCH1 12867606 YP_005701946.1 CDS Deval_1147 NC_017310.1 1334995 1335819 R KEGG: dde:Dde_2298 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1334995..1335819) Desulfovibrio vulgaris RCH1 12867607 YP_005701947.1 CDS Deval_1148 NC_017310.1 1335831 1336634 R PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein; hypothetical protein complement(1335831..1336634) Desulfovibrio vulgaris RCH1 12867608 YP_005701948.1 CDS Deval_1149 NC_017310.1 1336666 1337487 R PFAM: Sporulation domain-containing protein; KEGG: dsa:Desal_3691 sporulation domain protein; sporulation domain-containing protein complement(1336666..1337487) Desulfovibrio vulgaris RCH1 12867609 YP_005701949.1 CDS Deval_1150 NC_017310.1 1337508 1339163 R TIGRFAM: arginyl-tRNA synthetase; KEGG: dde:Dde_2295 arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(1337508..1339163) Desulfovibrio vulgaris RCH1 12867610 YP_005701950.1 CDS Deval_1151 NC_017310.1 1339394 1340347 R KEGG: dde:Dde_2294 [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase complement(1339394..1340347) Desulfovibrio vulgaris RCH1 12867611 YP_005701951.1 CDS Deval_1152 NC_017310.1 1340498 1341154 D PFAM: glucose inhibited division protein; KEGG: dsa:Desal_3719 methyltransferase GidB; glucose inhibited division protein 1340498..1341154 Desulfovibrio vulgaris RCH1 12867612 YP_005701952.1 CDS Deval_1153 NC_017310.1 1341115 1341333 R KEGG: dde:Dde_2292 hypothetical protein; hypothetical protein complement(1341115..1341333) Desulfovibrio vulgaris RCH1 12867613 YP_005701953.1 CDS Deval_1154 NC_017310.1 1341462 1343738 D PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: dds:Ddes_0746 oligosaccharyl transferase STT3 subunit; oligosaccharyl transferase STT3 subunit 1341462..1343738 Desulfovibrio vulgaris RCH1 12867614 YP_005701954.1 CDS Deval_1155 NC_017310.1 1343956 1344426 R PFAM: protein of unknown function DUF163; KEGG: dde:Dde_2291 hypothetical protein; hypothetical protein complement(1343956..1344426) Desulfovibrio vulgaris RCH1 12867615 YP_005701955.1 CDS Deval_1156 NC_017310.1 1344779 1345411 D KEGG: dde:Dde_2289 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; Sua5/YciO/YrdC/YwlC family protein 1344779..1345411 Desulfovibrio vulgaris RCH1 12867616 YP_005701956.1 CDS Deval_1157 NC_017310.1 1345520 1346503 R PFAM: glycosyl transferase family 9; KEGG: drt:Dret_0811 glycosyl transferase family 9; glycosyl transferase family protein complement(1345520..1346503) Desulfovibrio vulgaris RCH1 12867617 YP_005701957.1 CDS Deval_1158 NC_017310.1 1346876 1347148 D KEGG: dds:Ddes_2020 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 1346876..1347148 Desulfovibrio vulgaris RCH1 12867618 YP_005701958.1 CDS Deval_1159 NC_017310.1 1347295 1349475 R PFAM: glutamine synthetase catalytic region; KEGG: dma:DMR_10730 glutamine synthetase type III; glutamine synthetase complement(1347295..1349475) Desulfovibrio vulgaris RCH1 12867619 YP_005701959.1 CDS Deval_1160 NC_017310.1 1350175 1351458 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 1350175..1351458 Desulfovibrio vulgaris RCH1 12867620 YP_005701960.1 CDS Deval_1161 NC_017310.1 1351772 1353430 R PFAM: tail X family protein; KEGG: drt:Dret_1995 peptidoglycan-binding lysin domain protein; tail X family protein complement(1351772..1353430) Desulfovibrio vulgaris RCH1 12867621 YP_005701961.1 CDS Deval_1162 NC_017310.1 1353541 1354650 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dma:DMR_06690 twitching mobility protein; SMART: AAA ATPase; twitching motility protein complement(1353541..1354650) Desulfovibrio vulgaris RCH1 12867622 YP_005701962.1 CDS Deval_1163 NC_017310.1 1354826 1355629 D KEGG: drt:Dret_2409 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; prepilin peptidase 1354826..1355629 Desulfovibrio vulgaris RCH1 12867623 YP_005701963.1 CDS Deval_1164 NC_017310.1 1355937 1356698 R PFAM: Lytic transglycosylase catalytic; KEGG: drt:Dret_1919 lytic transglycosylase catalytic; lytic transglycosylase complement(1355937..1356698) Desulfovibrio vulgaris RCH1 12867624 YP_005701964.1 CDS Deval_1165 NC_017310.1 1356709 1357458 D KEGG: mgr:MGG_12677 hypothetical protein; hypothetical protein 1356709..1357458 Desulfovibrio vulgaris RCH1 12867625 YP_005701965.1 CDS Deval_1166 NC_017310.1 1357909 1361346 R KEGG: dal:Dalk_4828 hypothetical protein; hypothetical protein complement(1357909..1361346) Desulfovibrio vulgaris RCH1 12867626 YP_005701966.1 CDS Deval_1167 NC_017310.1 1361357 1361917 R KEGG: dal:Dalk_4827 hypothetical protein; hypothetical protein complement(1361357..1361917) Desulfovibrio vulgaris RCH1 12867627 YP_005701967.1 CDS Deval_1168 NC_017310.1 1362037 1362606 R KEGG: dal:Dalk_4826 hypothetical protein; hypothetical protein complement(1362037..1362606) Desulfovibrio vulgaris RCH1 12867628 YP_005701968.1 CDS Deval_1169 NC_017310.1 1362751 1364031 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dma:DMR_29520 putative twitching mobility protein; SMART: AAA ATPase; twitching motility protein complement(1362751..1364031) Desulfovibrio vulgaris RCH1 12867629 YP_005701969.1 CDS Deval_1170 NC_017310.1 1364099 1364524 R KEGG: dal:Dalk_4820 hypothetical protein; hypothetical protein complement(1364099..1364524) Desulfovibrio vulgaris RCH1 12867630 YP_005701970.1 CDS Deval_1171 NC_017310.1 1364637 1365863 R PFAM: Type II secretion system F domain; KEGG: drt:Dret_1997 type II secretion system F domain protein; type II secretion system F domain-containing protein complement(1364637..1365863) Desulfovibrio vulgaris RCH1 12867631 YP_005701971.1 CDS Deval_1172 NC_017310.1 1365867 1367588 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: drt:Dret_1996 type II secretion system protein E; type II secretion system protein E complement(1365867..1367588) Desulfovibrio vulgaris RCH1 12867632 YP_005701972.1 CDS Deval_1173 NC_017310.1 1367877 1369451 R PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dal:Dalk_4815 type II and III secretion system protein; type II and III secretion system protein complement(1367877..1369451) Desulfovibrio vulgaris RCH1 12867633 YP_005701973.1 CDS Deval_1174 NC_017310.1 1369471 1369965 R KEGG: dma:DMR_06730 hypothetical protein; hypothetical protein complement(1369471..1369965) Desulfovibrio vulgaris RCH1 12867634 YP_005701974.1 CDS Deval_1175 NC_017310.1 1369970 1370521 R KEGG: drt:Dret_1992 hypothetical protein; hypothetical protein complement(1369970..1370521) Desulfovibrio vulgaris RCH1 12867635 YP_005701975.1 CDS Deval_1176 NC_017310.1 1370527 1372395 R KEGG: dma:DMR_06710 hypothetical protein; hypothetical protein complement(1370527..1372395) Desulfovibrio vulgaris RCH1 12867636 YP_005701976.1 CDS Deval_1177 NC_017310.1 1373504 1375474 D SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: dde:Dde_1513 FtsH peptidase; PFAM: peptidase M41; AAA ATPase central domain protein; ATP-dependent metalloprotease FtsH 1373504..1375474 Desulfovibrio vulgaris RCH1 12867638 YP_005701977.1 CDS Deval_1178 NC_017310.1 1375471 1376331 D TIGRFAM: dihydropteroate synthase; KEGG: dde:Dde_1514 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 1375471..1376331 Desulfovibrio vulgaris RCH1 12867639 YP_005701978.1 CDS Deval_1179 NC_017310.1 1376340 1377086 D PFAM: protein of unknown function DUF147; KEGG: dde:Dde_1515 hypothetical protein; hypothetical protein 1376340..1377086 Desulfovibrio vulgaris RCH1 12867640 YP_005701979.1 CDS Deval_1180 NC_017310.1 1377088 1377990 D PFAM: YbbR family protein; KEGG: dde:Dde_1516 hypothetical protein; hypothetical protein 1377088..1377990 Desulfovibrio vulgaris RCH1 12867641 YP_005701980.1 CDS Deval_1181 NC_017310.1 1378050 1379402 D KEGG: dde:Dde_1517 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase 1378050..1379402 Desulfovibrio vulgaris RCH1 12867642 YP_005701981.1 CDS Deval_1182 NC_017310.1 1379446 1380318 D KEGG: dde:Dde_1518 UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1379446..1380318 Desulfovibrio vulgaris RCH1 12867643 YP_005701982.1 CDS Deval_1183 NC_017310.1 1380394 1382772 D TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: dde:Dde_1519 replication restart DNA helicase PriA; SMART: helicase domain protein; DEAD-like helicase; primosomal protein N' 1380394..1382772 Desulfovibrio vulgaris RCH1 12867644 YP_005701983.1 CDS Deval_1184 NC_017310.1 1383022 1383414 D KEGG: dde:Dde_1521 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 1383022..1383414 Desulfovibrio vulgaris RCH1 12867645 YP_005701984.1 CDS Deval_1185 NC_017310.1 1383602 1384765 R PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit, putative; polysulfide reductase NrfD complement(1383602..1384765) Desulfovibrio vulgaris RCH1 12867646 YP_005701985.1 CDS Deval_1186 NC_017310.1 1384777 1385562 R KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit, putative; reductase, iron-sulfur binding subunit complement(1384777..1385562) Desulfovibrio vulgaris RCH1 12867647 YP_005701986.1 CDS Deval_1187 NC_017310.1 1385562 1385942 R KEGG: dde:Dde_2273 cytochrome c family protein; cytochrome c family protein complement(1385562..1385942) Desulfovibrio vulgaris RCH1 12867648 YP_005701987.1 CDS Deval_1188 NC_017310.1 1385945 1387555 R KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit, putative; reductase, iron-sulfur binding subunit complement(1385945..1387555) Desulfovibrio vulgaris RCH1 12867649 YP_005701988.1 CDS Deval_1189 NC_017310.1 1387565 1388569 R PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative; nitrate reductase subunit gamma complement(1387565..1388569) Desulfovibrio vulgaris RCH1 12867650 YP_005701989.1 CDS Deval_1190 NC_017310.1 1388604 1389131 R KEGG: dde:Dde_2270 hypothetical protein; hypothetical protein complement(1388604..1389131) Desulfovibrio vulgaris RCH1 12867651 YP_005701990.1 CDS Deval_1191 NC_017310.1 1389342 1390289 R KEGG: dds:Ddes_0453 hypothetical protein; hypothetical protein complement(1389342..1390289) Desulfovibrio vulgaris RCH1 12867652 YP_005701991.1 CDS Deval_1192 NC_017310.1 1390380 1391078 D PFAM: protein of unknown function DUF45; KEGG: dba:Dbac_0875 protein of unknown function DUF45; hypothetical protein 1390380..1391078 Desulfovibrio vulgaris RCH1 12867653 YP_005701992.1 CDS Deval_1193 NC_017310.1 1391230 1392513 R TIGRFAM: sulfate adenylyltransferase; KEGG: dde:Dde_2265 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; sulfate adenylyltransferase complement(1391230..1392513) Desulfovibrio vulgaris RCH1 12867654 YP_005701993.1 CDS Deval_1194 NC_017310.1 1393151 1393522 D KEGG: dde:Dde_2263 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; 30S ribosomal protein S12 1393151..1393522 Desulfovibrio vulgaris RCH1 12867655 YP_005701994.1 CDS Deval_1195 NC_017310.1 1393538 1394008 D KEGG: lip:LI0943 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; 30S ribosomal protein S7 1393538..1394008 Desulfovibrio vulgaris RCH1 12867656 YP_005701995.1 CDS Deval_1196 NC_017310.1 1394048 1396099 D TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; KEGG: dds:Ddes_2069 translation elongation factor G; SMART: elongation factor G domain IV; elongation factor G domain-containing protein; translation elongation factor G 1394048..1396099 Desulfovibrio vulgaris RCH1 12867657 YP_005701996.1 CDS Deval_1197 NC_017310.1 1396749 1397066 D KEGG: dde:Dde_2258 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; 30S ribosomal protein S10 1396749..1397066 Desulfovibrio vulgaris RCH1 12867658 YP_005701997.1 CDS Deval_1198 NC_017310.1 1397079 1397708 D KEGG: dde:Dde_2257 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; 50S ribosomal protein L3 1397079..1397708 Desulfovibrio vulgaris RCH1 12867659 YP_005701998.1 CDS Deval_1199 NC_017310.1 1397727 1398347 D PFAM: ribosomal protein L4/L1e; KEGG: dde:Dde_2256 50S ribosomal protein L4; 50S ribosomal protein L4 1397727..1398347 Desulfovibrio vulgaris RCH1 12867660 YP_005701999.1 CDS Deval_1200 NC_017310.1 1398361 1398651 D PFAM: Ribosomal protein L25/L23; KEGG: dde:Dde_2255 50S ribosomal protein L23; 50S ribosomal protein L25 1398361..1398651 Desulfovibrio vulgaris RCH1 12867661 YP_005702000.1 CDS Deval_1201 NC_017310.1 1398655 1399485 D KEGG: dde:Dde_2254 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; 50S ribosomal protein L2 1398655..1399485 Desulfovibrio vulgaris RCH1 12867662 YP_005702001.1 CDS Deval_1202 NC_017310.1 1399495 1399776 D KEGG: dds:Ddes_0664 ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; 30S ribosomal protein S19 1399495..1399776 Desulfovibrio vulgaris RCH1 12867663 YP_005702002.1 CDS Deval_1203 NC_017310.1 1399789 1400127 D KEGG: dds:Ddes_0665 ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; 50S ribosomal protein L22 1399789..1400127 Desulfovibrio vulgaris RCH1 12867664 YP_005702003.1 CDS Deval_1204 NC_017310.1 1400132 1400770 D TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: dde:Dde_2251 30S ribosomal protein S3; SMART: KH domain protein; 30S ribosomal protein S3 1400132..1400770 Desulfovibrio vulgaris RCH1 12867665 YP_005702004.1 CDS Deval_1205 NC_017310.1 1400773 1401186 D KEGG: dds:Ddes_0667 ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 1400773..1401186 Desulfovibrio vulgaris RCH1 12867666 YP_005702005.1 CDS Deval_1206 NC_017310.1 1401188 1401373 D KEGG: dde:Dde_2249 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; 50S ribosomal protein L29 1401188..1401373 Desulfovibrio vulgaris RCH1 12867667 YP_005702006.1 CDS Deval_1207 NC_017310.1 1401384 1401650 D KEGG: dds:Ddes_0669 ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; 30S ribosomal protein S17 1401384..1401650 Desulfovibrio vulgaris RCH1 12867668 YP_005702007.1 CDS Deval_1208 NC_017310.1 1401661 1402029 D KEGG: lip:LI0969 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; 50S ribosomal protein L14 1401661..1402029 Desulfovibrio vulgaris RCH1 12867669 YP_005702008.1 CDS Deval_1209 NC_017310.1 1402039 1402362 D TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dde:Dde_2246 50S ribosomal protein L24; SMART: KOW domain protein; 50S ribosomal protein L24 1402039..1402362 Desulfovibrio vulgaris RCH1 12867670 YP_005702009.1 CDS Deval_1210 NC_017310.1 1402374 1402913 D KEGG: dds:Ddes_0672 ribosomal protein L5; 50S ribosomal protein L5 1402374..1402913 Desulfovibrio vulgaris RCH1 12867671 YP_005702010.1 CDS Deval_1211 NC_017310.1 1402926 1403111 D PFAM: ribosomal protein S14; KEGG: dde:Dde_2244 30S ribosomal protein S14; 30S ribosomal protein S14 1402926..1403111 Desulfovibrio vulgaris RCH1 12867672 YP_005702011.1 CDS Deval_1212 NC_017310.1 1403130 1403510 D PFAM: ribosomal protein S8; KEGG: dds:Ddes_0674 ribosomal protein S8; 30S ribosomal protein S8 1403130..1403510 Desulfovibrio vulgaris RCH1 12867673 YP_005702012.1 CDS Deval_1213 NC_017310.1 1403523 1404062 D KEGG: dde:Dde_2242 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 1403523..1404062 Desulfovibrio vulgaris RCH1 12867674 YP_005702013.1 CDS Deval_1214 NC_017310.1 1404076 1404435 D KEGG: dds:Ddes_0676 ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 1404076..1404435 Desulfovibrio vulgaris RCH1 12867675 YP_005702014.1 CDS Deval_1215 NC_017310.1 1404455 1404946 D KEGG: dde:Dde_2240 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; 30S ribosomal protein S5 1404455..1404946 Desulfovibrio vulgaris RCH1 12867676 YP_005702015.1 CDS Deval_1216 NC_017310.1 1404956 1405126 D KEGG: dsa:Desal_1203 ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; 50S ribosomal protein L30 1404956..1405126 Desulfovibrio vulgaris RCH1 12867677 YP_005702016.1 CDS Deval_1217 NC_017310.1 1405126 1405572 D TIGRFAM: ribosomal protein L15; KEGG: dde:Dde_2238 50S ribosomal protein L15; 50S ribosomal protein L15 1405126..1405572 Desulfovibrio vulgaris RCH1 12867678 YP_005702017.1 CDS Deval_1218 NC_017310.1 1405576 1406889 D manually curated; TIGRFAM: preprotein translocase, SecY subunit; KEGG: dde:Dde_2237 preprotein translocase subunit SecY; PFAM: SecY protein; preprotein translocase subunit SecY 1405576..1406889 Desulfovibrio vulgaris RCH1 12867679 YP_005702018.1 CDS Deval_1219 NC_017310.1 1406891 1407670 D manually curated; TIGRFAM: methionine aminopeptidase, type I; KEGG: dde:Dde_2236 methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 1406891..1407670 Desulfovibrio vulgaris RCH1 12867680 YP_005702019.1 CDS Deval_1220 NC_017310.1 1407764 1407877 D KEGG: dds:Ddes_0682 ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; 50S ribosomal protein L36 1407764..1407877 Desulfovibrio vulgaris RCH1 12867681 YP_005702020.1 CDS Deval_1221 NC_017310.1 1407896 1408264 D KEGG: dde:Dde_2234 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13; 30S ribosomal protein S13 1407896..1408264 Desulfovibrio vulgaris RCH1 12867682 YP_005702021.1 CDS Deval_1222 NC_017310.1 1408413 1408802 D KEGG: dde:Dde_2233 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; 30S ribosomal protein S11 1408413..1408802 Desulfovibrio vulgaris RCH1 12867683 YP_005702022.1 CDS Deval_1223 NC_017310.1 1408818 1409444 D TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: dds:Ddes_0685 ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 1408818..1409444 Desulfovibrio vulgaris RCH1 12867684 YP_005702023.1 CDS Deval_1224 NC_017310.1 1409457 1410500 D TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: dde:Dde_2231 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 1409457..1410500 Desulfovibrio vulgaris RCH1 12867685 YP_005702024.1 CDS Deval_1225 NC_017310.1 1410490 1410891 D KEGG: dde:Dde_2230 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; 50S ribosomal protein L17 1410490..1410891 Desulfovibrio vulgaris RCH1 12867686 YP_005702025.1 CDS Deval_1226 NC_017310.1 1411033 1411959 D KEGG: dde:Dde_2226 LysR family transcriptional regulator; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR; LysR family transcriptional regulator 1411033..1411959 Desulfovibrio vulgaris RCH1 12867687 YP_005702026.1 CDS Deval_1227 NC_017310.1 1411949 1413004 D manually curated; KEGG: dsa:Desal_0640 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; Contains selenocysteine; selenide, water dikinase 1411949..1413004 Desulfovibrio vulgaris RCH1 12867688 YP_005702027.1 CDS Deval_1228 NC_017310.1 1413303 1414604 D KEGG: dde:Dde_2222 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type; trigger factor 1413303..1414604 Desulfovibrio vulgaris RCH1 12867690 YP_005702028.1 CDS Deval_1229 NC_017310.1 1414791 1415396 D TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: dde:Dde_2220 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 1414791..1415396 Desulfovibrio vulgaris RCH1 12867691 YP_005702029.1 CDS Deval_1230 NC_017310.1 1415407 1416660 D TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: dde:Dde_2219 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 1415407..1416660 Desulfovibrio vulgaris RCH1 12867692 YP_005702030.1 CDS Deval_1231 NC_017310.1 1416779 1419244 D SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: dde:Dde_2218 Lon-A peptidase; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATP-dependent protease La 1416779..1419244 Desulfovibrio vulgaris RCH1 12867693 YP_005702031.1 CDS Deval_1232 NC_017310.1 1419407 1419991 R KEGG: dds:Ddes_0947 hypothetical protein; hypothetical protein complement(1419407..1419991) Desulfovibrio vulgaris RCH1 12867694 YP_005702032.1 CDS Deval_1233 NC_017310.1 1420000 1420287 R KEGG: dds:Ddes_0948 hypothetical protein; hypothetical protein complement(1420000..1420287) Desulfovibrio vulgaris RCH1 12867695 YP_005702033.1 CDS Deval_1234 NC_017310.1 1420292 1421122 R KEGG: lip:LI0208 hypothetical protein; hypothetical protein complement(1420292..1421122) Desulfovibrio vulgaris RCH1 12867696 YP_005702034.1 CDS Deval_1235 NC_017310.1 1421284 1421778 R PFAM: ferric-uptake regulator; KEGG: dma:DMR_26810 Fur family transcriptional regulator; ferric uptake regulator family protein complement(1421284..1421778) Desulfovibrio vulgaris RCH1 12867697 YP_005702035.1 CDS Deval_1236 NC_017310.1 1421775 1422599 R PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein; ABC-3 protein complement(1421775..1422599) Desulfovibrio vulgaris RCH1 12867698 YP_005702036.1 CDS Deval_1237 NC_017310.1 1422601 1423407 R KEGG: dde:Dde_2209 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1422601..1423407) Desulfovibrio vulgaris RCH1 12867699 YP_005702037.1 CDS Deval_1238 NC_017310.1 1423410 1424417 R PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein; periplasmic solute binding protein complement(1423410..1424417) Desulfovibrio vulgaris RCH1 12867700 YP_005702038.1 CDS Deval_1239 NC_017310.1 1424748 1425839 D KEGG: dde:Dde_2207 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1424748..1425839 Desulfovibrio vulgaris RCH1 12867701 YP_005702039.1 CDS Deval_1240 NC_017310.1 1425839 1427563 D KEGG: dde:Dde_2206 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; prolyl-tRNA synthetase 1425839..1427563 Desulfovibrio vulgaris RCH1 12867702 YP_005702040.1 CDS Deval_1241 NC_017310.1 1427610 1429007 D KEGG: dde:Dde_2204 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1427610..1429007 Desulfovibrio vulgaris RCH1 12867703 YP_005702041.1 CDS Deval_1242 NC_017310.1 1429000 1429950 D PFAM: Peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase; peptidase M23 1429000..1429950 Desulfovibrio vulgaris RCH1 12867704 YP_005702042.1 CDS Deval_1243 NC_017310.1 1429962 1430207 D PFAM: Exonuclease VII small subunit; KEGG: dde:Dde_2202 exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit 1429962..1430207 Desulfovibrio vulgaris RCH1 12867705 YP_005702043.1 CDS Deval_1244 NC_017310.1 1430191 1431090 D KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; farnesyltranstransferase 1430191..1431090 Desulfovibrio vulgaris RCH1 12867706 YP_005702044.1 CDS Deval_1245 NC_017310.1 1431130 1433055 D KEGG: dde:Dde_2200 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein; deoxyxylulose-5-phosphate synthase 1431130..1433055 Desulfovibrio vulgaris RCH1 12867707 YP_005702045.1 CDS Deval_1246 NC_017310.1 1433298 1433918 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein complement(1433298..1433918) Desulfovibrio vulgaris RCH1 12867708 YP_005702046.1 CDS Deval_1247 NC_017310.1 1434030 1434419 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase, putative; 6-pyruvoyl-tetrahydropterin synthase complement(1434030..1434419) Desulfovibrio vulgaris RCH1 12867709 YP_005702047.1 CDS Deval_1248 NC_017310.1 1434421 1437915 R SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dde:Dde_2196 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III subunit alpha complement(1434421..1437915) Desulfovibrio vulgaris RCH1 12867710 YP_005702048.1 CDS Deval_1249 NC_017310.1 1438151 1438369 D hypothetical protein 1438151..1438369 Desulfovibrio vulgaris RCH1 12867711 YP_005702049.1 CDS Deval_1250 NC_017310.1 1438393 1438761 D KEGG: dde:Dde_2194 hypothetical protein; hypothetical protein 1438393..1438761 Desulfovibrio vulgaris RCH1 12867712 YP_005702050.1 CDS Deval_1251 NC_017310.1 1438754 1439572 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dds:Ddes_1232 metal dependent phosphohydrolase; metal-dependent phosphohydrolase HD sub domain-containing protein 1438754..1439572 Desulfovibrio vulgaris RCH1 12867713 YP_005702051.1 CDS Deval_1252 NC_017310.1 1439569 1440195 D PFAM: Methyltransferase type 11; KEGG: dde:Dde_2191 hypothetical protein; type 11 methyltransferase 1439569..1440195 Desulfovibrio vulgaris RCH1 12867714 YP_005702052.1 CDS Deval_1253 NC_017310.1 1440414 1441106 R KEGG: sfu:Sfum_3208 hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase complement(1440414..1441106) Desulfovibrio vulgaris RCH1 12867715 YP_005702053.1 CDS Deval_1254 NC_017310.1 1441103 1442263 R KEGG: dds:Ddes_1127 hypothetical protein; hypothetical protein complement(1441103..1442263) Desulfovibrio vulgaris RCH1 12867716 YP_005702054.1 CDS Deval_1255 NC_017310.1 1442361 1443356 D KEGG: dde:Dde_2187 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 1442361..1443356 Desulfovibrio vulgaris RCH1 12867717 YP_005702055.1 CDS Deval_1256 NC_017310.1 1443438 1444568 R TIGRFAM: lipid-A-disaccharide synthase; KEGG: dde:Dde_2185 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase complement(1443438..1444568) Desulfovibrio vulgaris RCH1 12867718 YP_005702056.1 CDS Deval_1257 NC_017310.1 1444570 1445538 R KEGG: dde:Dde_2184 hypothetical protein; hypothetical protein complement(1444570..1445538) Desulfovibrio vulgaris RCH1 12867719 YP_005702057.1 CDS Deval_1258 NC_017310.1 1445566 1446441 R TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2183 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(1445566..1446441) Desulfovibrio vulgaris RCH1 12867720 YP_005702058.1 CDS Deval_1259 NC_017310.1 1446438 1447460 R KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase complement(1446438..1447460) Desulfovibrio vulgaris RCH1 12867721 YP_005702059.1 CDS Deval_1260 NC_017310.1 1447648 1448496 D KEGG: dde:Dde_2181 heme-binding protein, putative; PFAM: anaerobic cobalt chelatase; Sirohydrochlorin cobaltochelatase 1447648..1448496 Desulfovibrio vulgaris RCH1 12867722 YP_005702060.1 CDS Deval_1261 NC_017310.1 1448657 1449562 D KEGG: dde:Dde_2178 putative lipoprotein; putative lipoprotein 1448657..1449562 Desulfovibrio vulgaris RCH1 12867723 YP_005702061.1 CDS Deval_1262 NC_017310.1 1449625 1449822 R manually curated; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; KEGG: dds:Ddes_1121 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit complement(1449625..1449822) Desulfovibrio vulgaris RCH1 12867724 YP_005702062.1 CDS Deval_1263 NC_017310.1 1449934 1451556 D KEGG: dde:Dde_2176 rhodanese-like protein; PFAM: Rhodanese domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 1449934..1451556 Desulfovibrio vulgaris RCH1 12867725 YP_005702063.1 CDS Deval_1264 NC_017310.1 1451553 1452002 D KEGG: dde:Dde_2175 hypothetical protein; hypothetical protein 1451553..1452002 Desulfovibrio vulgaris RCH1 12867726 YP_005702064.1 CDS Deval_1265 NC_017310.1 1452015 1452887 D KEGG: dde:Dde_2174 hypothetical protein; hypothetical protein 1452015..1452887 Desulfovibrio vulgaris RCH1 12867727 YP_005702065.1 CDS Deval_1266 NC_017310.1 1452898 1453572 D KEGG: dde:Dde_2173 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1452898..1453572 Desulfovibrio vulgaris RCH1 12867728 YP_005702066.1 CDS Deval_1267 NC_017310.1 1453677 1453979 D PFAM: protein of unknown function YGGT; KEGG: drt:Dret_1665 protein of unknown function YGGT; hypothetical protein 1453677..1453979 Desulfovibrio vulgaris RCH1 12867729 YP_005702067.1 CDS Deval_1268 NC_017310.1 1453988 1454497 D KEGG: dde:Dde_2171 cell-division initiation protein DivIVA; TIGRFAM: DivIVA domain; PFAM: DivIVA family protein; DivIVA domain-containing protein 1453988..1454497 Desulfovibrio vulgaris RCH1 12867730 YP_005702068.1 CDS Deval_1269 NC_017310.1 1454490 1454810 D PFAM: protein of unknown function DUF167; KEGG: drt:Dret_1664 protein of unknown function DUF167; hypothetical protein 1454490..1454810 Desulfovibrio vulgaris RCH1 12867731 YP_005702069.1 CDS Deval_1270 NC_017310.1 1454831 1455061 D KEGG: dds:Ddes_1902 hypothetical protein; hypothetical protein 1454831..1455061 Desulfovibrio vulgaris RCH1 12867732 YP_005702070.1 CDS Deval_1271 NC_017310.1 1455062 1456753 D KEGG: dde:Dde_2168 acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 1455062..1456753 Desulfovibrio vulgaris RCH1 12867733 YP_005702071.1 CDS Deval_1272 NC_017310.1 1456763 1457251 D KEGG: dde:Dde_2167 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase small subunit 1456763..1457251 Desulfovibrio vulgaris RCH1 12867734 YP_005702072.1 CDS Deval_1273 NC_017310.1 1457373 1458368 D TIGRFAM: ketol-acid reductoisomerase; KEGG: dde:Dde_2166 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase 1457373..1458368 Desulfovibrio vulgaris RCH1 12867735 YP_005702073.1 CDS Deval_1274 NC_017310.1 1458842 1459057 R KEGG: dde:Dde_2165 hypothetical protein; hypothetical protein complement(1458842..1459057) Desulfovibrio vulgaris RCH1 12867736 YP_005702074.1 CDS Deval_1275 NC_017310.1 1459118 1459441 R KEGG: dde:Dde_2018 HesB-like domain-containing protein; manually curated; PFAM: HesB/YadR/YfhF-family protein; Contains selenocysteine; HesB/YadR/YfhF-family protein complement(1459118..1459441) Desulfovibrio vulgaris RCH1 12867737 YP_005702075.1 CDS Deval_1276 NC_017310.1 1459531 1459833 R KEGG: dde:Dde_2018 HesB-like domain-containing protein; HesB-like domain-containing protein complement(1459531..1459833) Desulfovibrio vulgaris RCH1 12867738 YP_005702076.1 CDS Deval_1277 NC_017310.1 1459979 1460515 D PFAM: phosphoribosyltransferase; KEGG: dds:Ddes_0906 uracil phosphoribosyltransferase; phosphoribosyltransferase 1459979..1460515 Desulfovibrio vulgaris RCH1 12867739 YP_005702077.1 CDS Deval_1278 NC_017310.1 1460848 1462398 R KEGG: dds:Ddes_1045 hypothetical protein; hypothetical protein complement(1460848..1462398) Desulfovibrio vulgaris RCH1 12867740 YP_005702078.1 CDS Deval_1279 NC_017310.1 1462707 1464017 D PFAM: Protein of unknown function DUF2172, aminopeptidase-like; KEGG: gsu:GSU1966 hypothetical protein; hypothetical protein 1462707..1464017 Desulfovibrio vulgaris RCH1 12867741 YP_005702079.1 CDS Deval_1280 NC_017310.1 1464190 1464945 D PFAM: extracellular solute-binding protein family 3; KEGG: dsa:Desal_0670 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1464190..1464945 Desulfovibrio vulgaris RCH1 12867742 YP_005702080.1 CDS Deval_1281 NC_017310.1 1465182 1466315 R KEGG: dds:Ddes_1132 hypothetical protein; hypothetical protein complement(1465182..1466315) Desulfovibrio vulgaris RCH1 12867743 YP_005702081.1 CDS Deval_1282 NC_017310.1 1466500 1466967 R KEGG: aga:AgaP_AGAP010539 AGAP010539-PA; hypothetical protein complement(1466500..1466967) Desulfovibrio vulgaris RCH1 12867744 YP_005702082.1 CDS Deval_1283 NC_017310.1 1467189 1467674 R KEGG: dma:DMR_39120 hypothetical protein; hypothetical protein complement(1467189..1467674) Desulfovibrio vulgaris RCH1 12867745 YP_005702083.1 CDS Deval_1284 NC_017310.1 1467956 1468672 D PFAM: NLP/P60 protein; KEGG: dma:DMR_17960 NlpC/P60 family protein; NLP/P60 protein 1467956..1468672 Desulfovibrio vulgaris RCH1 12867746 YP_005702084.1 CDS Deval_1285 NC_017310.1 1468935 1469156 D TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator; phage/conjugal plasmid C-4 type zinc finger protein, TraR family 1468935..1469156 Desulfovibrio vulgaris RCH1 12867747 YP_005702085.1 CDS Deval_1286 NC_017310.1 1469605 1470144 R PFAM: Ferritin Dps family protein; KEGG: dba:Dbac_0293 ferritin Dps family protein; ferritin Dps family protein complement(1469605..1470144) Desulfovibrio vulgaris RCH1 12867748 YP_005702086.1 CDS Deval_1287 NC_017310.1 1470413 1470577 D KEGG: dma:DMR_01390 methyl-accepting chemotaxis protein; hypothetical protein 1470413..1470577 Desulfovibrio vulgaris RCH1 12867749 YP_005702087.1 CDS Deval_1288 NC_017310.1 1470540 1471382 R PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit; integrase catalytic subunit complement(1470540..1471382) Desulfovibrio vulgaris RCH1 12867750 YP_005702088.1 CDS Deval_1289 NC_017310.1 1471379 1471777 R KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1471379..1471777) Desulfovibrio vulgaris RCH1 12867751 YP_005702089.1 CDS Deval_1291 NC_017310.1 1472132 1472743 D PFAM: Protein of unkown function DUF1819 putative inner membrane; KEGG: cpb:Cphamn1_1682 hypothetical protein; hypothetical protein 1472132..1472743 Desulfovibrio vulgaris RCH1 12867753 YP_005702090.1 CDS Deval_1292 NC_017310.1 1472743 1473354 D PFAM: Domain of unknown function DUF1788; KEGG: cpb:Cphamn1_1681 hypothetical protein; hypothetical protein 1472743..1473354 Desulfovibrio vulgaris RCH1 12867754 YP_005702091.1 CDS Deval_1293 NC_017310.1 1473369 1476917 D KEGG: cpb:Cphamn1_1680 hypothetical protein; hypothetical protein 1473369..1476917 Desulfovibrio vulgaris RCH1 12867755 YP_005702092.1 CDS Deval_1294 NC_017310.1 1476914 1477978 D KEGG: cpb:Cphamn1_1679 hypothetical protein; hypothetical protein 1476914..1477978 Desulfovibrio vulgaris RCH1 12867756 YP_005702093.1 CDS Deval_1295 NC_017310.1 1477975 1478514 D KEGG: cpb:Cphamn1_1678 hypothetical protein; hypothetical protein 1477975..1478514 Desulfovibrio vulgaris RCH1 12867757 YP_005702094.1 CDS Deval_1296 NC_017310.1 1478519 1481995 D KEGG: cpb:Cphamn1_1677 hypothetical protein; hypothetical protein 1478519..1481995 Desulfovibrio vulgaris RCH1 12867758 YP_005702095.1 CDS Deval_1297 NC_017310.1 1481995 1482462 D KEGG: cpb:Cphamn1_2551 hypothetical protein; hypothetical protein 1481995..1482462 Desulfovibrio vulgaris RCH1 12867759 YP_005702096.1 CDS Deval_1298 NC_017310.1 1482459 1484957 D PFAM: PglZ domain protein; KEGG: cpb:Cphamn1_1676 PglZ domain protein; PglZ domain-containing protein 1482459..1484957 Desulfovibrio vulgaris RCH1 12867760 YP_005702097.1 CDS Deval_1299 NC_017310.1 1484972 1487041 D KEGG: cpb:Cphamn1_1675 hypothetical protein; hypothetical protein 1484972..1487041 Desulfovibrio vulgaris RCH1 12867761 YP_005702098.1 CDS Deval_1300 NC_017310.1 1487031 1487246 D KEGG: ctt:CtCNB1_2429 hypothetical protein; hypothetical protein 1487031..1487246 Desulfovibrio vulgaris RCH1 12867762 YP_005702099.1 CDS Deval_1301 NC_017310.1 1487287 1488528 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: acr:Acry_3487 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1487287..1488528 Desulfovibrio vulgaris RCH1 12867763 YP_005702100.1 CDS Deval_1303 NC_017310.1 1489638 1490813 D PFAM: flavodoxin/nitric oxide synthase; KEGG: dba:Dbac_1920 beta-lactamase domain protein; flavodoxin/nitric oxide synthase 1489638..1490813 Desulfovibrio vulgaris RCH1 12867765 YP_005702101.1 CDS Deval_1304 NC_017310.1 1490888 1492549 D KEGG: dba:Dbac_1919 hybrid cluster protein; TIGRFAM: hybrid cluster protein; PFAM: Prismane; hybrid cluster protein 1490888..1492549 Desulfovibrio vulgaris RCH1 12867766 YP_005702102.1 CDS Deval_1305 NC_017310.1 1492660 1492818 D KEGG: sfu:Sfum_2932 cytochrome b subunit of nitric oxide reductase; hypothetical protein 1492660..1492818 Desulfovibrio vulgaris RCH1 12867767 YP_005702103.1 CDS Deval_1306 NC_017310.1 1492987 1493253 D PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_2193 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1492987..1493253 Desulfovibrio vulgaris RCH1 12867768 YP_005702104.1 CDS Deval_1307 NC_017310.1 1493274 1494098 D KEGG: dba:Dbac_2192 integrase catalytic region; manually curated; PFAM: Integrase catalytic region; integrase catalytic subunit 1493274..1494098 Desulfovibrio vulgaris RCH1 12867769 YP_005702105.1 CDS Deval_1308 NC_017310.1 1494079 1494462 R KEGG: dde:Dde_3439 hypothetical protein; hypothetical protein complement(1494079..1494462) Desulfovibrio vulgaris RCH1 12867770 YP_005702106.1 CDS Deval_1309 NC_017310.1 1494823 1495239 D KEGG: dol:Dole_2932 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease 1494823..1495239 Desulfovibrio vulgaris RCH1 12867771 YP_005702107.1 CDS Deval_1310 NC_017310.1 1495350 1495505 D KEGG: dde:Dde_3728 hypothetical protein; hypothetical protein 1495350..1495505 Desulfovibrio vulgaris RCH1 12867772 YP_005702108.1 CDS Deval_1312 NC_017310.1 1495811 1496860 R PFAM: Integrase catalytic region; KEGG: glo:Glov_1005 integrase catalytic region; integrase catalytic subunit complement(1495811..1496860) Desulfovibrio vulgaris RCH1 12867774 YP_005702109.1 CDS Deval_1315 NC_017310.1 1499178 1500365 R PFAM: integrase family protein; KEGG: dde:Dde_3398 phage integrase family site specific recombinase; integrase family protein complement(1499178..1500365) Desulfovibrio vulgaris RCH1 12867777 YP_005702110.1 CDS Deval_1316 NC_017310.1 1500750 1501352 R KEGG: bta:539967 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae); hypothetical protein complement(1500750..1501352) Desulfovibrio vulgaris RCH1 12867778 YP_005702111.1 CDS Deval_1317 NC_017310.1 1501514 1503733 R PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb3535 sulfate permease and related transporters; sulfate transporter complement(1501514..1503733) Desulfovibrio vulgaris RCH1 12867779 YP_005702112.1 CDS Deval_1318 NC_017310.1 1504240 1505703 D KEGG: swo:Swol_1997 putative anti-sigma regulatory factor, serine/threonine protein kinase; hypothetical protein 1504240..1505703 Desulfovibrio vulgaris RCH1 12867780 YP_005702113.1 CDS Deval_1319 NC_017310.1 1505705 1506034 R PFAM: small multidrug resistance protein; KEGG: pph:Ppha_1102 small multidrug resistance protein; small multidrug resistance protein complement(1505705..1506034) Desulfovibrio vulgaris RCH1 12867781 YP_005702114.1 CDS Deval_1320 NC_017310.1 1506633 1506962 R KEGG: glo:Glov_0751 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist complement(1506633..1506962) Desulfovibrio vulgaris RCH1 12867782 YP_005702115.1 CDS Deval_1321 NC_017310.1 1507036 1507278 R KEGG: swo:Swol_1793 serine phosphatase RsbU regulator of sigma subunit-like protein; serine phosphatase RsbU regulator of sigma subunit-like protein complement(1507036..1507278) Desulfovibrio vulgaris RCH1 12867783 YP_005702116.1 CDS Deval_1322 NC_017310.1 1508255 1511008 D KEGG: dba:Dbac_3243 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; P-type HAD superfamily ATPase 1508255..1511008 Desulfovibrio vulgaris RCH1 12867784 YP_005702117.1 CDS Deval_1323 NC_017310.1 1511152 1511796 D PFAM: transferase hexapeptide repeat containing protein; KEGG: maq:Maqu_1388 hexapaptide repeat-containing transferase; transferase hexapeptide repeat containing protein 1511152..1511796 Desulfovibrio vulgaris RCH1 12867785 YP_005702118.1 CDS Deval_1324 NC_017310.1 1511999 1512994 R KEGG: sat:SYN_00464 putative cytoplasmic protein; putative cytoplasmic protein complement(1511999..1512994) Desulfovibrio vulgaris RCH1 12867786 YP_005702119.1 CDS Deval_1325 NC_017310.1 1513591 1514238 R KEGG: dds:Ddes_0600 hypothetical protein; hypothetical protein complement(1513591..1514238) Desulfovibrio vulgaris RCH1 12867788 YP_005702120.1 CDS Deval_1326 NC_017310.1 1514415 1515101 D PFAM: protein of unknown function DUF554; KEGG: dde:Dde_2488 hypothetical protein; hypothetical protein 1514415..1515101 Desulfovibrio vulgaris RCH1 12867789 YP_005702121.1 CDS Deval_1327 NC_017310.1 1515149 1518079 D KEGG: dde:Dde_2486 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; excinuclease ABC subunit A 1515149..1518079 Desulfovibrio vulgaris RCH1 12867790 YP_005702122.1 CDS Deval_1328 NC_017310.1 1518258 1518689 R KEGG: tau:Tola_1997 hypothetical protein; hypothetical protein complement(1518258..1518689) Desulfovibrio vulgaris RCH1 12867791 YP_005702123.1 CDS Deval_1329 NC_017310.1 1519090 1520346 D KEGG: dde:Dde_2484 hypothetical protein; hypothetical protein 1519090..1520346 Desulfovibrio vulgaris RCH1 12867792 YP_005702124.1 CDS Deval_1330 NC_017310.1 1520456 1521082 R TIGRFAM: peptide methionine sulfoxide reductase; KEGG: csa:Csal_1295 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(1520456..1521082) Desulfovibrio vulgaris RCH1 12867793 YP_005702125.1 CDS Deval_1331 NC_017310.1 1521210 1522433 R PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_2481 hypothetical protein; aminoglycoside phosphotransferase complement(1521210..1522433) Desulfovibrio vulgaris RCH1 12867794 YP_005702126.1 CDS Deval_1332 NC_017310.1 1522951 1524339 D KEGG: gme:Gmet_2573 ATP-dependent RNA helicase RhlE; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 1522951..1524339 Desulfovibrio vulgaris RCH1 12867795 YP_005702127.1 CDS Deval_1333 NC_017310.1 1524704 1525195 D PFAM: protein of unknown function DUF520; KEGG: dde:Dde_2479 putative nucleotide-binding protein; hypothetical protein 1524704..1525195 Desulfovibrio vulgaris RCH1 12867796 YP_005702128.1 CDS Deval_1334 NC_017310.1 1525673 1526065 R KEGG: dde:Dde_2478 hypothetical protein; hypothetical protein complement(1525673..1526065) Desulfovibrio vulgaris RCH1 12867797 YP_005702129.1 CDS Deval_1335 NC_017310.1 1526221 1528146 D KEGG: dde:Dde_2477 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1526221..1528146 Desulfovibrio vulgaris RCH1 12867798 YP_005702130.1 CDS Deval_1336 NC_017310.1 1528683 1530005 D PFAM: Na+/H+ antiporter NhaC-like; KEGG: dsa:Desal_2013 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC-like protein 1528683..1530005 Desulfovibrio vulgaris RCH1 12867799 YP_005702131.1 CDS Deval_1337 NC_017310.1 1530290 1530577 D PFAM: Chaperonin Cpn10; KEGG: dde:Dde_2474 co-chaperonin GroES; chaperonin Cpn10 1530290..1530577 Desulfovibrio vulgaris RCH1 12867800 YP_005702132.1 CDS Deval_1338 NC_017310.1 1530617 1532260 D KEGG: lip:LI0625 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; chaperonin GroEL 1530617..1532260 Desulfovibrio vulgaris RCH1 12867801 YP_005702133.1 CDS Deval_1339 NC_017310.1 1532455 1534203 D KEGG: dma:DMR_46100 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1532455..1534203 Desulfovibrio vulgaris RCH1 12867802 YP_005702134.1 CDS Deval_1340 NC_017310.1 1534275 1535378 R KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase; TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase family protein complement(1534275..1535378) Desulfovibrio vulgaris RCH1 12867803 YP_005702135.1 CDS Deval_1341 NC_017310.1 1535371 1536219 R KEGG: dde:Dde_2561 rhodanese-like protein; PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; Rhodanese domain-containing protein complement(1535371..1536219) Desulfovibrio vulgaris RCH1 12867804 YP_005702136.1 CDS Deval_1342 NC_017310.1 1536626 1537324 D KEGG: dde:Dde_0220 Sel1 repeat-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 1536626..1537324 Desulfovibrio vulgaris RCH1 12867805 YP_005702137.1 CDS Deval_1343 NC_017310.1 1537567 1537716 D KEGG: mho:MHO_0860 acyl carrier protein phosphodiesterase; hypothetical protein 1537567..1537716 Desulfovibrio vulgaris RCH1 12867806 YP_005702138.1 CDS Deval_1344 NC_017310.1 1537789 1538196 R manually curated; PFAM: response regulator receiver; KEGG: dde:Dde_0221 response regulator receiver domain-containing protein; SMART: response regulator receiver; response regulator receiver protein complement(1537789..1538196) Desulfovibrio vulgaris RCH1 12867807 YP_005702139.1 CDS Deval_1345 NC_017310.1 1538205 1538900 R PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein; hypothetical protein complement(1538205..1538900) Desulfovibrio vulgaris RCH1 12867808 YP_005702140.1 CDS Deval_1346 NC_017310.1 1538914 1540155 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1538914..1540155) Desulfovibrio vulgaris RCH1 12867809 YP_005702141.1 CDS Deval_1347 NC_017310.1 1540171 1540692 R KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator complement(1540171..1540692) Desulfovibrio vulgaris RCH1 12867810 YP_005702142.1 CDS Deval_1348 NC_017310.1 1541298 1541810 D KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator 1541298..1541810 Desulfovibrio vulgaris RCH1 12867811 YP_005702143.1 CDS Deval_1349 NC_017310.1 1541787 1542038 R KEGG: sco:SCO5011 integral membrane protein; hypothetical protein complement(1541787..1542038) Desulfovibrio vulgaris RCH1 12867812 YP_005702144.1 CDS Deval_1350 NC_017310.1 1542505 1544667 D KEGG: dde:Dde_1627 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 1542505..1544667 Desulfovibrio vulgaris RCH1 12867813 YP_005702145.1 CDS Deval_1351 NC_017310.1 1544676 1545179 D KEGG: dma:DMR_19080 chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein 1544676..1545179 Desulfovibrio vulgaris RCH1 12867814 YP_005702146.1 CDS Deval_1352 NC_017310.1 1545184 1547277 D KEGG: dma:DMR_19060 chemotaxis protein CheA; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein; CheA signal transduction histidine kinase 1545184..1547277 Desulfovibrio vulgaris RCH1 12867815 YP_005702147.1 CDS Deval_1353 NC_017310.1 1547499 1549892 R TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase complement(1547499..1549892) Desulfovibrio vulgaris RCH1 12867816 YP_005702148.1 CDS Deval_1354 NC_017310.1 1550216 1552888 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(1550216..1552888) Desulfovibrio vulgaris RCH1 12867817 YP_005702149.1 CDS Deval_1355 NC_017310.1 1552969 1554030 D PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1629 heptosyltransferase family protein; glycosyl transferase family protein 1552969..1554030 Desulfovibrio vulgaris RCH1 12867818 YP_005702150.1 CDS Deval_1356 NC_017310.1 1554172 1555005 R PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_1630 TPR repeat-containing protein; hypothetical protein complement(1554172..1555005) Desulfovibrio vulgaris RCH1 12867819 YP_005702151.1 CDS Deval_1357 NC_017310.1 1555002 1555706 R TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dds:Ddes_0440 cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1555002..1555706) Desulfovibrio vulgaris RCH1 12867820 YP_005702152.1 CDS Deval_1358 NC_017310.1 1555732 1556991 R KEGG: dde:Dde_1633 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase complement(1555732..1556991) Desulfovibrio vulgaris RCH1 12867821 YP_005702153.1 CDS Deval_1359 NC_017310.1 1557352 1558047 D KEGG: dde:Dde_1634 hypothetical protein; hypothetical protein 1557352..1558047 Desulfovibrio vulgaris RCH1 12867822 YP_005702154.1 CDS Deval_1360 NC_017310.1 1558096 1559946 D TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; KEGG: dds:Ddes_0443 indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; indolepyruvate ferredoxin oxidoreductase subunit alpha 1558096..1559946 Desulfovibrio vulgaris RCH1 12867823 YP_005702155.1 CDS Deval_1361 NC_017310.1 1559946 1560542 D PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dds:Ddes_0444 indolepyruvate ferredoxin oxidoreductase; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein 1559946..1560542 Desulfovibrio vulgaris RCH1 12867824 YP_005702156.1 CDS Deval_1362 NC_017310.1 1560546 1562135 D KEGG: dde:Dde_1635 Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; GAF domain protein; Fis family NifA subfamily transcriptional regulator 1560546..1562135 Desulfovibrio vulgaris RCH1 12867825 YP_005702157.1 CDS Deval_1363 NC_017310.1 1562400 1562690 R KEGG: dde:Dde_1636 hypothetical protein; hypothetical protein complement(1562400..1562690) Desulfovibrio vulgaris RCH1 12867826 YP_005702158.1 CDS Deval_1364 NC_017310.1 1562701 1563324 R PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_1637 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein complement(1562701..1563324) Desulfovibrio vulgaris RCH1 12867827 YP_005702159.1 CDS Deval_1365 NC_017310.1 1563321 1564151 R PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dde:Dde_1638 2-oxoglutarate ferredoxin oxidoreductase subunit beta; thiamine pyrophosphate TPP-binding domain-containing protein complement(1563321..1564151) Desulfovibrio vulgaris RCH1 12867828 YP_005702160.1 CDS Deval_1366 NC_017310.1 1564159 1565307 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1639 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(1564159..1565307) Desulfovibrio vulgaris RCH1 12867829 YP_005702161.1 CDS Deval_1367 NC_017310.1 1565309 1565581 R KEGG: drt:Dret_1403 4Fe-4S ferredoxin iron-sulfur binding domain protein; hypothetical protein complement(1565309..1565581) Desulfovibrio vulgaris RCH1 12867830 YP_005702162.1 CDS Deval_1368 NC_017310.1 1565854 1566087 R KEGG: dde:Dde_1642 hypothetical protein; hypothetical protein complement(1565854..1566087) Desulfovibrio vulgaris RCH1 12867831 YP_005702163.1 CDS Deval_1369 NC_017310.1 1566174 1568087 R KEGG: dde:Dde_1644 DegV family protein; TIGRFAM: degV family protein; PFAM: Dak phosphatase; DegV family protein; degV family protein complement(1566174..1568087) Desulfovibrio vulgaris RCH1 12867832 YP_005702164.1 CDS Deval_1370 NC_017310.1 1568352 1569119 D KEGG: dde:Dde_3732 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1568352..1569119 Desulfovibrio vulgaris RCH1 12867833 YP_005702165.1 CDS Deval_1371 NC_017310.1 1569155 1570705 D TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; KEGG: dba:Dbac_1438 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 1569155..1570705 Desulfovibrio vulgaris RCH1 12867834 YP_005702166.1 CDS Deval_1372 NC_017310.1 1570714 1571997 D TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; KEGG: drt:Dret_2101 glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; glycerol-3-phosphate dehydrogenase 1570714..1571997 Desulfovibrio vulgaris RCH1 12867835 YP_005702167.1 CDS Deval_1373 NC_017310.1 1572600 1573613 D KEGG: dde:Dde_3730 phosphonate-binding periplasmic protein; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; phosphonate ABC transporter periplasmic phosphonate-binding protein 1572600..1573613 Desulfovibrio vulgaris RCH1 12867836 YP_005702168.1 CDS Deval_1374 NC_017310.1 1573690 1574487 D TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dba:Dbac_0857 phosphonate ABC transporter, ATPase subunit; SMART: AAA ATPase; phosphonate ABC transporter ATP-binding protein 1573690..1574487 Desulfovibrio vulgaris RCH1 12867837 YP_005702169.1 CDS Deval_1375 NC_017310.1 1574484 1575272 D KEGG: dde:Dde_3725 phosphonate ABC transporter inner membrane protein; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane protein 1574484..1575272 Desulfovibrio vulgaris RCH1 12867838 YP_005702170.1 CDS Deval_1376 NC_017310.1 1575269 1576069 D KEGG: dde:Dde_3724 phosphonate ABC transporter permease; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane protein 1575269..1576069 Desulfovibrio vulgaris RCH1 12867839 YP_005702171.1 CDS Deval_1377 NC_017310.1 1576162 1576683 D KEGG: dba:Dbac_0225 intracellular protease, PfpI family; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein; Pfpi family intracellular protease 1576162..1576683 Desulfovibrio vulgaris RCH1 12867840 YP_005702172.1 CDS Deval_1378 NC_017310.1 1577204 1577875 R PFAM: adenylate kinase; KEGG: dde:Dde_2028 adenylate kinase; adenylate kinase complement(1577204..1577875) Desulfovibrio vulgaris RCH1 12867841 YP_005702173.1 CDS Deval_1379 NC_017310.1 1578359 1578802 R PFAM: NIL domain; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein; NIL domain-containing protein complement(1578359..1578802) Desulfovibrio vulgaris RCH1 12867842 YP_005702174.1 CDS Deval_1380 NC_017310.1 1578828 1579766 R TIGRFAM: tol-pal system protein YbgF; KEGG: lip:LI1053 hypothetical protein; tol-pal system protein YbgF complement(1578828..1579766) Desulfovibrio vulgaris RCH1 12867843 YP_005702175.1 CDS Deval_1381 NC_017310.1 1579801 1579998 R KEGG: dba:Dbac_0485 hypothetical protein; hypothetical protein complement(1579801..1579998) Desulfovibrio vulgaris RCH1 12867844 YP_005702176.1 CDS Deval_1382 NC_017310.1 1580001 1580498 R TIGRFAM: lipoprotein signal peptidase; KEGG: dds:Ddes_0386 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase complement(1580001..1580498) Desulfovibrio vulgaris RCH1 12867845 YP_005702177.1 CDS Deval_1383 NC_017310.1 1580562 1583378 R KEGG: dde:Dde_2142 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(1580562..1583378) Desulfovibrio vulgaris RCH1 12867846 YP_005702178.1 CDS Deval_1384 NC_017310.1 1583612 1584100 R KEGG: rxy:Rxyl_1674 hypothetical protein; manually curated; PFAM: AIG2 family protein; AIG2 family protein complement(1583612..1584100) Desulfovibrio vulgaris RCH1 12867847 YP_005702179.1 CDS Deval_1385 NC_017310.1 1584082 1584723 R PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase; G-D-S-L family lipolytic protein complement(1584082..1584723) Desulfovibrio vulgaris RCH1 12867848 YP_005702180.1 CDS Deval_1386 NC_017310.1 1584741 1584992 R KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone HypC/HupF complement(1584741..1584992) Desulfovibrio vulgaris RCH1 12867849 YP_005702181.1 CDS Deval_1387 NC_017310.1 1585004 1585621 R KEGG: dde:Dde_2139 hydrogenase expression/formation protein; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; hydrogenase expression/formation protein complement(1585004..1585621) Desulfovibrio vulgaris RCH1 12867850 YP_005702182.1 CDS Deval_1388 NC_017310.1 1585870 1587570 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1; nickel-dependent hydrogenase large subunit complement(1585870..1587570) Desulfovibrio vulgaris RCH1 12867851 YP_005702183.1 CDS Deval_1389 NC_017310.1 1587622 1588575 R TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA complement(1587622..1588575) Desulfovibrio vulgaris RCH1 12867852 YP_005702184.1 CDS Deval_1390 NC_017310.1 1588893 1589363 R KEGG: dde:Dde_2136 peptidase M52, hydrogen uptake protein; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; hydrogenase maturation protease complement(1588893..1589363) Desulfovibrio vulgaris RCH1 12867853 YP_005702185.1 CDS Deval_1391 NC_017310.1 1589632 1591164 R KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing; manually curated; PFAM: nickel-dependent hydrogenase large subunit; Contains selenocysteine; nickel-dependent hydrogenase large subunit complement(1589632..1591164) Desulfovibrio vulgaris RCH1 12867854 YP_005702186.1 CDS Deval_1392 NC_017310.1 1591198 1592151 R TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_2134 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA complement(1591198..1592151) Desulfovibrio vulgaris RCH1 12867855 YP_005702187.1 CDS Deval_1393 NC_017310.1 1592671 1594287 R KEGG: dde:Dde_2049 putative alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase complement(1592671..1594287) Desulfovibrio vulgaris RCH1 12867856 YP_005702188.1 CDS Deval_1394 NC_017310.1 1594302 1595528 R KEGG: dde:Dde_2048 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase complement(1594302..1595528) Desulfovibrio vulgaris RCH1 12867857 YP_005702189.1 CDS Deval_1395 NC_017310.1 1595587 1596075 R PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: dde:Dde_2047 hypothetical protein; hypothetical protein complement(1595587..1596075) Desulfovibrio vulgaris RCH1 12867858 YP_005702190.1 CDS Deval_1396 NC_017310.1 1596088 1596540 R KEGG: dde:Dde_2046 CBS; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; hypothetical protein complement(1596088..1596540) Desulfovibrio vulgaris RCH1 12867859 YP_005702191.1 CDS Deval_1397 NC_017310.1 1596533 1598257 R KEGG: dde:Dde_2045 hypothetical protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain-containing protein; protein of unknown function UPF0031; carbohydrate kinase complement(1596533..1598257) Desulfovibrio vulgaris RCH1 12867860 YP_005702192.1 CDS Deval_1398 NC_017310.1 1598379 1598753 R KEGG: dsa:Desal_1993 holo-acyl-carrier-protein synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase complement(1598379..1598753) Desulfovibrio vulgaris RCH1 12867861 YP_005702193.1 CDS Deval_1399 NC_017310.1 1598764 1599489 R TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: dde:Dde_2043 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ complement(1598764..1599489) Desulfovibrio vulgaris RCH1 12867862 YP_005702194.1 CDS Deval_1400 NC_017310.1 1599641 1600978 D TIGRFAM: nucleotide sugar dehydrogenase; KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1599641..1600978 Desulfovibrio vulgaris RCH1 12867863 YP_005702195.1 CDS Deval_1401 NC_017310.1 1601353 1601577 R KEGG: dde:Dde_2041 hypothetical protein; hypothetical protein complement(1601353..1601577) Desulfovibrio vulgaris RCH1 12867864 YP_005702196.1 CDS Deval_1402 NC_017310.1 1601802 1602278 D KEGG: dde:Dde_2040 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein 1601802..1602278 Desulfovibrio vulgaris RCH1 12867865 YP_005702197.1 CDS Deval_1403 NC_017310.1 1602360 1605839 D TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: dde:Dde_2039 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor 1602360..1605839 Desulfovibrio vulgaris RCH1 12867866 YP_005702198.1 CDS Deval_1404 NC_017310.1 1605850 1606836 D PFAM: SurA domain; KEGG: dde:Dde_2038 hypothetical protein; SurA domain-containing protein 1605850..1606836 Desulfovibrio vulgaris RCH1 12867867 YP_005702199.1 CDS Deval_1405 NC_017310.1 1606811 1607920 D PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dds:Ddes_0912 SurA domain protein; SurA domain-containing protein 1606811..1607920 Desulfovibrio vulgaris RCH1 12867868 YP_005702200.1 CDS Deval_1406 NC_017310.1 1608017 1608958 D KEGG: dds:Ddes_0913 hypothetical protein; hypothetical protein 1608017..1608958 Desulfovibrio vulgaris RCH1 12867869 YP_005702201.1 CDS Deval_1407 NC_017310.1 1608961 1609716 D KEGG: dde:Dde_2035 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; DNA repair protein RecO 1608961..1609716 Desulfovibrio vulgaris RCH1 12867870 YP_005702202.1 CDS Deval_1408 NC_017310.1 1609766 1610635 D TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: dde:Dde_2034 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha 1609766..1610635 Desulfovibrio vulgaris RCH1 12867871 YP_005702203.1 CDS Deval_1409 NC_017310.1 1610653 1612743 D TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: dde:Dde_2033 glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 1610653..1612743 Desulfovibrio vulgaris RCH1 12867872 YP_005702204.1 CDS Deval_1410 NC_017310.1 1612859 1613122 D KEGG: dde:Dde_2031 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; 30S ribosomal protein S20 1612859..1613122 Desulfovibrio vulgaris RCH1 12867873 YP_005702205.1 CDS Deval_1411 NC_017310.1 1613688 1614854 R PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein; major facilitator superfamily protein complement(1613688..1614854) Desulfovibrio vulgaris RCH1 12867874 YP_005702206.1 CDS Deval_1412 NC_017310.1 1615086 1615280 D KEGG: ame:408754 similar to TNF-receptor-associated factor 1 CG3048-PA, isoform A; hypothetical protein 1615086..1615280 Desulfovibrio vulgaris RCH1 12867875 YP_005702207.1 CDS Deval_1413 NC_017310.1 1615491 1617911 R KEGG: dde:Dde_2626 ATP-dependent protease, putative; ATP-dependent protease complement(1615491..1617911) Desulfovibrio vulgaris RCH1 12867876 YP_005702208.1 CDS Deval_1414 NC_017310.1 1618039 1618788 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 1618039..1618788 Desulfovibrio vulgaris RCH1 12867877 YP_005702209.1 CDS Deval_1415 NC_017310.1 1618785 1619519 D PFAM: Protein of unknown function DUF2064; KEGG: dde:Dde_2624 hypothetical protein; hypothetical protein 1618785..1619519 Desulfovibrio vulgaris RCH1 12867878 YP_005702210.1 CDS Deval_1416 NC_017310.1 1619862 1620809 R KEGG: dde:Dde_2621 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase complement(1619862..1620809) Desulfovibrio vulgaris RCH1 12867879 YP_005702211.1 CDS Deval_1417 NC_017310.1 1620846 1621070 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dds:Ddes_1286 regulatory protein, FmdB family; SMART: Putative regulatory protein FmdB; FmdB family regulatory protein complement(1620846..1621070) Desulfovibrio vulgaris RCH1 12867880 YP_005702212.1 CDS Deval_1418 NC_017310.1 1621124 1621750 R KEGG: dde:Dde_2619 phosphoheptose isomerase; phosphoheptose isomerase complement(1621124..1621750) Desulfovibrio vulgaris RCH1 12867881 YP_005702213.1 CDS Deval_1419 NC_017310.1 1621886 1622785 D PFAM: ATP-NAD/AcoX kinase; KEGG: dde:Dde_2618 NAD(+) kinase; ATP-NAD/AcoX kinase 1621886..1622785 Desulfovibrio vulgaris RCH1 12867882 YP_005702214.1 CDS Deval_1420 NC_017310.1 1622867 1624609 D KEGG: dde:Dde_2617 hypothetical protein; hypothetical protein 1622867..1624609 Desulfovibrio vulgaris RCH1 12867883 YP_005702215.1 CDS Deval_1421 NC_017310.1 1624631 1625308 D KEGG: dde:Dde_2616 hypothetical protein; hypothetical protein 1624631..1625308 Desulfovibrio vulgaris RCH1 12867884 YP_005702216.1 CDS Deval_1422 NC_017310.1 1625311 1626741 D KEGG: dde:Dde_2615 aspartyl/glutamyl-tRNA amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; glutamyl-tRNA(Gln) amidotransferase subunit B 1625311..1626741 Desulfovibrio vulgaris RCH1 12867885 YP_005702217.1 CDS Deval_1423 NC_017310.1 1627066 1629468 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: dde:Dde_1650 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1627066..1629468 Desulfovibrio vulgaris RCH1 12867886 YP_005702218.1 CDS Deval_1424 NC_017310.1 1629695 1630183 R PFAM: protein of unknown function UPF0054; KEGG: dsa:Desal_1783 protein of unknown function UPF0054; hypothetical protein complement(1629695..1630183) Desulfovibrio vulgaris RCH1 12867887 YP_005702219.1 CDS Deval_1425 NC_017310.1 1630180 1632663 R TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; KEGG: dde:Dde_1652 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; cyclic nucleotide-binding protein complement(1630180..1632663) Desulfovibrio vulgaris RCH1 12867888 YP_005702220.1 CDS Deval_1426 NC_017310.1 1632635 1633636 R PFAM: PhoH family protein; KEGG: dde:Dde_1653 PhoH family protein; PhoH family protein complement(1632635..1633636) Desulfovibrio vulgaris RCH1 12867889 YP_005702221.1 CDS Deval_1427 NC_017310.1 1633813 1634454 D KEGG: dde:Dde_1654 hypothetical protein; hypothetical protein 1633813..1634454 Desulfovibrio vulgaris RCH1 12867890 YP_005702222.1 CDS Deval_1428 NC_017310.1 1634780 1635949 D PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1634780..1635949 Desulfovibrio vulgaris RCH1 12867891 YP_005702223.1 CDS Deval_1429 NC_017310.1 1635961 1636983 D KEGG: aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; threonine aldolase 1635961..1636983 Desulfovibrio vulgaris RCH1 12867892 YP_005702224.1 CDS Deval_1430 NC_017310.1 1637182 1638282 R PFAM: polysaccharide deacetylase; KEGG: dde:Dde_1658 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(1637182..1638282) Desulfovibrio vulgaris RCH1 12867893 YP_005702225.1 CDS Deval_1431 NC_017310.1 1638425 1639375 D KEGG: dde:Dde_1659 heat shock protein DnaJ-like; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone DnaJ domain-containing protein 1638425..1639375 Desulfovibrio vulgaris RCH1 12867894 YP_005702226.1 CDS Deval_1432 NC_017310.1 1639408 1639725 D KEGG: dde:Dde_1660 DafA protein; DafA protein 1639408..1639725 Desulfovibrio vulgaris RCH1 12867895 YP_005702227.1 CDS Deval_1433 NC_017310.1 1639750 1642347 D TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: dde:Dde_1661 ATPase; SMART: AAA ATPase; ATP-dependent chaperone ClpB 1639750..1642347 Desulfovibrio vulgaris RCH1 12867896 YP_005702228.1 CDS Deval_1434 NC_017310.1 1642557 1643144 D KEGG: bav:BAV2564 peptidyl-prolyl cis-trans isomerase B; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; Peptidylprolyl isomerase 1642557..1643144 Desulfovibrio vulgaris RCH1 12867897 YP_005702229.1 CDS Deval_1435 NC_017310.1 1643660 1645066 D KEGG: dde:Dde_1663 aspartate ammonia-lyase; TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like; aspartate ammonia-lyase 1643660..1645066 Desulfovibrio vulgaris RCH1 12867898 YP_005702230.1 CDS Deval_1436 NC_017310.1 1645121 1645216 D hypothetical protein 1645121..1645216 Desulfovibrio vulgaris RCH1 12867899 YP_005702231.1 CDS Deval_1437 NC_017310.1 1645231 1646118 D PFAM: cyclase family protein; KEGG: dde:Dde_1664 cyclase, putative; cyclase family protein 1645231..1646118 Desulfovibrio vulgaris RCH1 12867900 YP_005702232.1 CDS Deval_1438 NC_017310.1 1646228 1648543 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(1646228..1648543) Desulfovibrio vulgaris RCH1 12867901 YP_005702233.1 CDS Deval_1439 NC_017310.1 1648916 1649794 R KEGG: dde:Dde_1797 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase complement(1648916..1649794) Desulfovibrio vulgaris RCH1 12867902 YP_005702234.1 CDS Deval_1440 NC_017310.1 1649850 1650698 R KEGG: dde:Dde_1798 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase complement(1649850..1650698) Desulfovibrio vulgaris RCH1 12867903 YP_005702235.1 CDS Deval_1441 NC_017310.1 1650724 1651425 R KEGG: dma:DMR_26140 hypothetical protein; hypothetical protein complement(1650724..1651425) Desulfovibrio vulgaris RCH1 12867904 YP_005702236.1 CDS Deval_1442 NC_017310.1 1651477 1651617 R KEGG: dma:DMR_26140 hypothetical protein; hypothetical protein complement(1651477..1651617) Desulfovibrio vulgaris RCH1 12867905 YP_005702237.1 CDS Deval_1443 NC_017310.1 1651604 1651885 R KEGG: dde:Dde_1799 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(1651604..1651885) Desulfovibrio vulgaris RCH1 12867906 YP_005702238.1 CDS Deval_1444 NC_017310.1 1651960 1652778 R KEGG: dde:Dde_1800 flagellar synthesis regulator FleN, putative; flagellar synthesis regulator FleN complement(1651960..1652778) Desulfovibrio vulgaris RCH1 12867907 YP_005702239.1 CDS Deval_1445 NC_017310.1 1652775 1653770 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dsa:Desal_1592 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase complement(1652775..1653770) Desulfovibrio vulgaris RCH1 12867908 YP_005702240.1 CDS Deval_1446 NC_017310.1 1653751 1654867 R manually curated; manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein complement(join(1653751..1654791,1654793..1654867)) Desulfovibrio vulgaris RCH1 12867909 YP_005702241.1 CDS Deval_1447 NC_017310.1 1654891 1656399 R KEGG: dma:DMR_26090 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(1654891..1656399) Desulfovibrio vulgaris RCH1 12867910 YP_005702242.1 CDS Deval_1448 NC_017310.1 1656865 1657401 D manually curated; PFAM: Excalibur domain protein; Cold-shock protein DNA-binding; KEGG: eba:ebA2865 cold shock family protein; SMART: Cold shock protein; excalibur domain-containing protein 1656865..1657401 Desulfovibrio vulgaris RCH1 12867911 YP_005702243.1 CDS Deval_1449 NC_017310.1 1657656 1659743 D KEGG: dsa:Desal_2891 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 1657656..1659743 Desulfovibrio vulgaris RCH1 12867912 YP_005702244.1 CDS Deval_1451 NC_017310.1 1661077 1661685 R KEGG: dde:Dde_1940 hypothetical protein; hypothetical protein complement(1661077..1661685) Desulfovibrio vulgaris RCH1 12867915 YP_005702245.1 CDS Deval_1452 NC_017310.1 1661846 1662142 D KEGG: cfa:489443 smoothelin-like 2; hypothetical protein 1661846..1662142 Desulfovibrio vulgaris RCH1 12867916 YP_005702246.1 CDS Deval_1453 NC_017310.1 1662324 1662935 R KEGG: sbp:Sbal223_0115 protein of unknown function DUF1311; hypothetical protein complement(1662324..1662935) Desulfovibrio vulgaris RCH1 12867917 YP_005702247.1 CDS Deval_1454 NC_017310.1 1663090 1664412 R PFAM: Peptidase M23; KEGG: dde:Dde_2079 M24/M37 family peptidase; peptidase M23 complement(1663090..1664412) Desulfovibrio vulgaris RCH1 12867918 YP_005702248.1 CDS Deval_1455 NC_017310.1 1664493 1664921 R KEGG: dde:Dde_2078 CBS; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; hypothetical protein complement(1664493..1664921) Desulfovibrio vulgaris RCH1 12867919 YP_005702249.1 CDS Deval_1456 NC_017310.1 1665116 1665778 D TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: dde:Dde_2077 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1665116..1665778 Desulfovibrio vulgaris RCH1 12867920 YP_005702250.1 CDS Deval_1457 NC_017310.1 1665782 1666375 D KEGG: dde:Dde_2076 hypothetical protein; hypothetical protein 1665782..1666375 Desulfovibrio vulgaris RCH1 12867921 YP_005702251.1 CDS Deval_1458 NC_017310.1 1666538 1667431 D PFAM: ATPase-like, ParA/MinD; KEGG: dde:Dde_2075 hypothetical protein; ParA/MinD-like ATPase 1666538..1667431 Desulfovibrio vulgaris RCH1 12867922 YP_005702252.1 CDS Deval_1459 NC_017310.1 1667550 1668107 D KEGG: dde:Dde_2074 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1667550..1668107 Desulfovibrio vulgaris RCH1 12867923 YP_005702253.1 CDS Deval_1460 NC_017310.1 1668137 1668409 D KEGG: dde:Dde_2073 hypothetical protein; hypothetical protein 1668137..1668409 Desulfovibrio vulgaris RCH1 12867924 YP_005702254.1 CDS Deval_1461 NC_017310.1 1668406 1668735 D PFAM: Septum formation initiator; KEGG: dde:Dde_2072 cell division protein FtsB; septum formation initiator 1668406..1668735 Desulfovibrio vulgaris RCH1 12867925 YP_005702255.1 CDS Deval_1462 NC_017310.1 1668719 1669672 D KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein; response regulator receiver/SARP domain-containing protein 1668719..1669672 Desulfovibrio vulgaris RCH1 12867926 YP_005702256.1 CDS Deval_1463 NC_017310.1 1669718 1670674 D KEGG: dds:Ddes_1196 hypothetical protein; hypothetical protein 1669718..1670674 Desulfovibrio vulgaris RCH1 12867927 YP_005702257.1 CDS Deval_1464 NC_017310.1 1670767 1671780 D PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: dde:Dde_2069 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase 1670767..1671780 Desulfovibrio vulgaris RCH1 12867928 YP_005702258.1 CDS Deval_1465 NC_017310.1 1671822 1672907 D TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: dde:Dde_2068 O-sialoglycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 1671822..1672907 Desulfovibrio vulgaris RCH1 12867929 YP_005702259.1 CDS Deval_1466 NC_017310.1 1673020 1673343 D KEGG: dde:Dde_2067 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; thioredoxin 1673020..1673343 Desulfovibrio vulgaris RCH1 12867930 YP_005702260.1 CDS Deval_1467 NC_017310.1 1673343 1674266 D KEGG: dde:Dde_2066 thioredoxin reductase (NADPH); TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 1673343..1674266 Desulfovibrio vulgaris RCH1 12867931 YP_005702261.1 CDS Deval_1468 NC_017310.1 1674259 1674990 D TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dde:Dde_2065 putative lipoprotein; outer membrane assembly lipoprotein YfiO 1674259..1674990 Desulfovibrio vulgaris RCH1 12867932 YP_005702262.1 CDS Deval_1469 NC_017310.1 1675091 1676242 R PFAM: Polynucleotide adenylyltransferase region; KEGG: dds:Ddes_1555 polynucleotide adenylyltransferase region; Polynucleotide adenylyltransferase region complement(1675091..1676242) Desulfovibrio vulgaris RCH1 12867933 YP_005702263.1 CDS Deval_1470 NC_017310.1 1676292 1677224 D KEGG: dde:Dde_2082 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin--acetyl-CoA-carboxylase ligase 1676292..1677224 Desulfovibrio vulgaris RCH1 12867934 YP_005702264.1 CDS Deval_1471 NC_017310.1 1677309 1681013 D KEGG: dde:Dde_2081 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; pyruvate carboxyltransferase; Conserved carboxylase region; biotin carboxylase domain protein; Carbamoyl-phosphate synthetase large chain domain protein; biotin/lipoyl attachment domain-containing protein; SMART: biotin carboxylase domain protein; carbamoyl-phosphate synthase subunit L 1677309..1681013 Desulfovibrio vulgaris RCH1 12867935 YP_005702265.1 CDS Deval_1472 NC_017310.1 1681157 1684732 D PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase; pyruvate phosphate dikinase PEP/pyruvate-binding protein 1681157..1684732 Desulfovibrio vulgaris RCH1 12867936 YP_005702266.1 CDS Deval_1473 NC_017310.1 1685527 1686354 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: lip:LI0941 Mg2+/Co2+ transporter; hypothetical protein complement(1685527..1686354) Desulfovibrio vulgaris RCH1 12867937 YP_005702267.1 CDS Deval_1474 NC_017310.1 1686449 1687513 R KEGG: dde:Dde_1808 hypothetical protein; hypothetical protein complement(1686449..1687513) Desulfovibrio vulgaris RCH1 12867938 YP_005702268.1 CDS Deval_1475 NC_017310.1 1687774 1689663 R KEGG: dde:Dde_1809 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; glucose inhibited division protein A complement(1687774..1689663) Desulfovibrio vulgaris RCH1 12867939 YP_005702269.1 CDS Deval_1476 NC_017310.1 1689666 1690889 R KEGG: dde:Dde_1810 diaminopimelate aminotransferase; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase complement(1689666..1690889) Desulfovibrio vulgaris RCH1 12867940 YP_005702270.1 CDS Deval_1477 NC_017310.1 1691017 1691289 R KEGG: dds:Ddes_1932 hypothetical protein; hypothetical protein complement(1691017..1691289) Desulfovibrio vulgaris RCH1 12867941 YP_005702271.1 CDS Deval_1478 NC_017310.1 1691429 1692757 R KEGG: dde:Dde_1812 atrazine chlorohydrolase; PFAM: amidohydrolase; S-adenosylhomocysteine deaminase complement(1691429..1692757) Desulfovibrio vulgaris RCH1 12867942 YP_005702272.1 CDS Deval_1479 NC_017310.1 1692910 1693704 D KEGG: drt:Dret_1708 putative carboxylesterase; putative carboxylesterase 1692910..1693704 Desulfovibrio vulgaris RCH1 12867943 YP_005702273.1 CDS Deval_1480 NC_017310.1 1693923 1695446 D KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase (NADPH) 1693923..1695446 Desulfovibrio vulgaris RCH1 12867944 YP_005702274.1 CDS Deval_1481 NC_017310.1 1695461 1696555 D PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit; glutamine amidotransferase 1695461..1696555 Desulfovibrio vulgaris RCH1 12867945 YP_005702275.1 CDS Deval_1482 NC_017310.1 1696558 1697313 D PFAM: glutamate synthase alpha subunit domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit; glutamate synthase alpha subunit domain-containing protein 1696558..1697313 Desulfovibrio vulgaris RCH1 12867946 YP_005702276.1 CDS Deval_1483 NC_017310.1 1697814 1698179 D KEGG: dde:Dde_1817 protein translocase subunit YajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase subunit YajC 1697814..1698179 Desulfovibrio vulgaris RCH1 12867947 YP_005702277.1 CDS Deval_1484 NC_017310.1 1698310 1699908 D KEGG: dde:Dde_1818 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecD 1698310..1699908 Desulfovibrio vulgaris RCH1 12867948 YP_005702278.1 CDS Deval_1485 NC_017310.1 1699921 1701009 D KEGG: dde:Dde_1819 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecF 1699921..1701009 Desulfovibrio vulgaris RCH1 12867949 YP_005702279.1 CDS Deval_1486 NC_017310.1 1701161 1701472 D PFAM: cytochrome c class I; KEGG: dde:Dde_1821 cytochrome c-553; cytochrome c class I 1701161..1701472 Desulfovibrio vulgaris RCH1 12867950 YP_005702280.1 CDS Deval_1487 NC_017310.1 1701914 1702669 D KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC; hypothetical protein 1701914..1702669 Desulfovibrio vulgaris RCH1 12867951 YP_005702281.1 CDS Deval_1488 NC_017310.1 1702693 1704318 D KEGG: dde:Dde_1823 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 1702693..1704318 Desulfovibrio vulgaris RCH1 12867952 YP_005702282.1 CDS Deval_1489 NC_017310.1 1704311 1704940 D PFAM: cytochrome c oxidase subunit III; KEGG: dba:Dbac_1540 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 1704311..1704940 Desulfovibrio vulgaris RCH1 12867953 YP_005702283.1 CDS Deval_1490 NC_017310.1 1704949 1705242 D TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase, subunit IV; caa(3)-type oxidase, subunit IV 1704949..1705242 Desulfovibrio vulgaris RCH1 12867954 YP_005702284.1 CDS Deval_1491 NC_017310.1 1705252 1706532 D KEGG: dde:Dde_1826 cytochrome c oxidase, subunit II, putative; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c oxidase subunit II 1705252..1706532 Desulfovibrio vulgaris RCH1 12867955 YP_005702285.1 CDS Deval_1492 NC_017310.1 1706576 1707439 D PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1827 protoheme IX farnesyltransferase, putative; UbiA prenyltransferase 1706576..1707439 Desulfovibrio vulgaris RCH1 12867956 YP_005702286.1 CDS Deval_1493 NC_017310.1 1707457 1707879 D KEGG: dde:Dde_1828 hypothetical protein; hypothetical protein 1707457..1707879 Desulfovibrio vulgaris RCH1 12867957 YP_005702287.1 CDS Deval_1494 NC_017310.1 1707990 1709576 R KEGG: dde:Dde_1829 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase complement(1707990..1709576) Desulfovibrio vulgaris RCH1 12867958 YP_005702288.1 CDS Deval_1495 NC_017310.1 1709589 1710665 R TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: dde:Dde_1830 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A complement(1709589..1710665) Desulfovibrio vulgaris RCH1 12867959 YP_005702289.1 CDS Deval_1496 NC_017310.1 1710662 1711549 R TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: dde:Dde_1831 nicotinate-nucleotide pyrophosphorylase [carboxylating]; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(1710662..1711549) Desulfovibrio vulgaris RCH1 12867960 YP_005702290.1 CDS Deval_1497 NC_017310.1 1711693 1713063 D KEGG: dde:Dde_1832 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; magnesium transporter 1711693..1713063 Desulfovibrio vulgaris RCH1 12867961 YP_005702291.1 CDS Deval_1498 NC_017310.1 1713299 1714762 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase complement(1713299..1714762) Desulfovibrio vulgaris RCH1 12867962 YP_005702292.1 CDS Deval_1499 NC_017310.1 1714932 1716761 D PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1714932..1716761 Desulfovibrio vulgaris RCH1 12867963 YP_005702293.1 CDS Deval_1500 NC_017310.1 1716761 1717849 D PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1836 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1716761..1717849 Desulfovibrio vulgaris RCH1 12867964 YP_005702294.1 CDS Deval_1501 NC_017310.1 1717880 1718740 R PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like; alpha/beta hydrolase fold protein complement(1717880..1718740) Desulfovibrio vulgaris RCH1 12867965 YP_005702295.1 CDS Deval_1502 NC_017310.1 1718968 1720137 D KEGG: dde:Dde_1838 hypothetical protein; hypothetical protein 1718968..1720137 Desulfovibrio vulgaris RCH1 12867966 YP_005702296.1 CDS Deval_1503 NC_017310.1 1720404 1721351 D KEGG: dde:Dde_2064 hypothetical protein; hypothetical protein 1720404..1721351 Desulfovibrio vulgaris RCH1 12867967 YP_005702297.1 CDS Deval_1504 NC_017310.1 1721344 1723392 D KEGG: dde:Dde_2063 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; translation elongation factor G 1721344..1723392 Desulfovibrio vulgaris RCH1 12867968 YP_005702298.1 CDS Deval_1505 NC_017310.1 1723399 1723914 D PFAM: Protein of unknown function DUF2062; KEGG: dde:Dde_2062 hypothetical protein; hypothetical protein 1723399..1723914 Desulfovibrio vulgaris RCH1 12867969 YP_005702299.1 CDS Deval_1506 NC_017310.1 1723904 1724806 D TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dde:Dde_2059 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase-like; dimethyladenosine transferase 1723904..1724806 Desulfovibrio vulgaris RCH1 12867970 YP_005702300.1 CDS Deval_1507 NC_017310.1 1725008 1725280 D KEGG: dde:Dde_2058 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1725008..1725280 Desulfovibrio vulgaris RCH1 12867971 YP_005702301.1 CDS Deval_1508 NC_017310.1 1725291 1725494 D KEGG: dde:Dde_2057 hypothetical protein; hypothetical protein 1725291..1725494 Desulfovibrio vulgaris RCH1 12867972 YP_005702302.1 CDS Deval_1509 NC_017310.1 1725611 1725814 D KEGG: dds:Ddes_1089 ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; 30S ribosomal protein S21 1725611..1725814 Desulfovibrio vulgaris RCH1 12867973 YP_005702303.1 CDS Deval_1510 NC_017310.1 1725930 1726379 D KEGG: dde:Dde_2055 GatB/YqeY family protein; GatB/YqeY family protein 1725930..1726379 Desulfovibrio vulgaris RCH1 12867974 YP_005702304.1 CDS Deval_1511 NC_017310.1 1726386 1728701 D KEGG: dde:Dde_2054 DNA mismatch repair protein MutS-like; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; Smr protein/MutS2 1726386..1728701 Desulfovibrio vulgaris RCH1 12867975 YP_005702305.1 CDS Deval_1512 NC_017310.1 1728734 1730452 D TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; KEGG: dde:Dde_2053 DNA primase; SMART: Toprim sub domain-containing protein; DNA primase 1728734..1730452 Desulfovibrio vulgaris RCH1 12867976 YP_005702306.1 CDS Deval_1513 NC_017310.1 1730445 1732217 D KEGG: dde:Dde_2052 sigma-70 factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; RpoD subfamily RNA polymerase sigma-70 subunit 1730445..1732217 Desulfovibrio vulgaris RCH1 12867977 YP_005702307.1 CDS Deval_1514 NC_017310.1 1732343 1733071 D KEGG: dma:DMR_22330 hypothetical protein; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease 1732343..1733071 Desulfovibrio vulgaris RCH1 12867978 YP_005702308.1 CDS Deval_1515 NC_017310.1 1733104 1734162 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2050 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1733104..1734162 Desulfovibrio vulgaris RCH1 12867979 YP_005702309.1 CDS Deval_1516 NC_017310.1 1734722 1735324 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein complement(1734722..1735324) Desulfovibrio vulgaris RCH1 12867980 YP_005702310.1 CDS Deval_1517 NC_017310.1 1735528 1736289 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1841 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR complement(1735528..1736289) Desulfovibrio vulgaris RCH1 12867981 YP_005702311.1 CDS Deval_1518 NC_017310.1 1736461 1737213 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1842 hypothetical protein; hypothetical protein 1736461..1737213 Desulfovibrio vulgaris RCH1 12867982 YP_005702312.1 CDS Deval_1519 NC_017310.1 1737206 1738633 D KEGG: dde:Dde_1843 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; iron-sulfur cluster binding protein 1737206..1738633 Desulfovibrio vulgaris RCH1 12867983 YP_005702313.1 CDS Deval_1520 NC_017310.1 1738626 1739291 D PFAM: protein of unknown function DUF162; KEGG: azl:AZL_e03870 hypothetical protein; hypothetical protein 1738626..1739291 Desulfovibrio vulgaris RCH1 12867984 YP_005702314.1 CDS Deval_1521 NC_017310.1 1739476 1739781 D KEGG: geo:Geob_3738 protein of unknown function DUF1653; manually curated; PFAM: protein of unknown function DUF1653; hypothetical protein 1739476..1739781 Desulfovibrio vulgaris RCH1 12867985 YP_005702315.1 CDS Deval_1522 NC_017310.1 1740097 1741542 D KEGG: dds:Ddes_1202 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1740097..1741542 Desulfovibrio vulgaris RCH1 12867986 YP_005702316.1 CDS Deval_1523 NC_017310.1 1741565 1742209 D KEGG: dma:DMR_00600 putative carbonic anhydrase; PFAM: carbonic anhydrase; carbonate dehydratase 1741565..1742209 Desulfovibrio vulgaris RCH1 12867987 YP_005702317.1 CDS Deval_1524 NC_017310.1 1742683 1743327 D KEGG: dal:Dalk_3412 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1742683..1743327 Desulfovibrio vulgaris RCH1 12867988 YP_005702318.1 CDS Deval_1525 NC_017310.1 1743590 1744471 R KEGG: dma:DMR_00060 hypothetical protein; hypothetical protein complement(1743590..1744471) Desulfovibrio vulgaris RCH1 12867989 YP_005702319.1 CDS Deval_1526 NC_017310.1 1744970 1746991 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: dat:HRM2_26590 GltD1; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1744970..1746991 Desulfovibrio vulgaris RCH1 12867990 YP_005702320.1 CDS Deval_1527 NC_017310.1 1747015 1748835 D KEGG: dat:HRM2_26580 HydA2; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit; hydrogenase, Fe-only 1747015..1748835 Desulfovibrio vulgaris RCH1 12867991 YP_005702321.1 CDS Deval_1528 NC_017310.1 1749088 1749459 R KEGG: dma:DMR_12950 Fe hydrogenase small subunit; PFAM: iron hydrogenase small subunit; ferredoxin hydrogenase complement(1749088..1749459) Desulfovibrio vulgaris RCH1 12867992 YP_005702322.1 CDS Deval_1529 NC_017310.1 1749471 1750736 R TIGRFAM: hydrogenase, Fe-only; KEGG: dma:DMR_12960 Fe hydrogenase large subunit; PFAM: hydrogenase large subunit domain protein; hydrogenase, Fe-only complement(1749471..1750736) Desulfovibrio vulgaris RCH1 12867993 YP_005702323.1 CDS Deval_1530 NC_017310.1 1750889 1752121 R KEGG: ppd:Ppro_1494 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; small GTP-binding protein complement(1750889..1752121) Desulfovibrio vulgaris RCH1 12867994 YP_005702324.1 CDS Deval_1531 NC_017310.1 1752126 1753085 R KEGG: dds:Ddes_1504 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin and thiamin synthesis associated; radical SAM protein complement(1752126..1753085) Desulfovibrio vulgaris RCH1 12867995 YP_005702325.1 CDS Deval_1532 NC_017310.1 1753091 1754503 R PFAM: fumarate lyase; Fumarase C-like; KEGG: ppd:Ppro_1493 aspartate ammonia-lyase; fumarate lyase complement(1753091..1754503) Desulfovibrio vulgaris RCH1 12867996 YP_005702326.1 CDS Deval_1533 NC_017310.1 1754490 1755884 R PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: dds:Ddes_1505 biotin and thiamin synthesis associated; biotin and thiamin synthesis associated protein complement(1754490..1755884) Desulfovibrio vulgaris RCH1 12867997 YP_005702327.1 CDS Deval_1534 NC_017310.1 1755912 1756181 R KEGG: tte:TTE1595 hypothetical protein; hypothetical protein complement(1755912..1756181) Desulfovibrio vulgaris RCH1 12867998 YP_005702328.1 CDS Deval_1535 NC_017310.1 1756975 1757433 R PFAM: protein of unknown function DUF307; KEGG: reu:Reut_B5323 hypothetical protein; hypothetical protein complement(1756975..1757433) Desulfovibrio vulgaris RCH1 12867999 YP_005702329.1 CDS Deval_1536 NC_017310.1 1757682 1758266 D PFAM: regulatory protein TetR; KEGG: rlt:Rleg2_6295 transcriptional regulator, TetR family; regulatory protein TetR 1757682..1758266 Desulfovibrio vulgaris RCH1 12868000 YP_005702330.1 CDS Deval_1537 NC_017310.1 1758371 1758463 D hypothetical protein 1758371..1758463 Desulfovibrio vulgaris RCH1 12868001 YP_005702331.1 CDS Deval_1538 NC_017310.1 1758794 1759273 D KEGG: dsa:Desal_2665 putative transcriptional regulator, ModE family; manually curated; PFAM: regulatory protein LysR; putative ModE family transcriptional regulator 1758794..1759273 Desulfovibrio vulgaris RCH1 12868002 YP_005702332.1 CDS Deval_1539 NC_017310.1 1759438 1760145 R KEGG: dds:Ddes_1303 hypothetical protein; hypothetical protein complement(1759438..1760145) Desulfovibrio vulgaris RCH1 12868003 YP_005702333.1 CDS Deval_1540 NC_017310.1 1760491 1761612 D PFAM: integrase family protein; KEGG: dol:Dole_2954 integrase family protein; integrase family protein 1760491..1761612 Desulfovibrio vulgaris RCH1 12868004 YP_005702334.1 CDS Deval_1541 NC_017310.1 1761584 1761847 R KEGG: sjp:SJA_P1-01890 putative phage transcriptional regulator AlpA; hypothetical protein complement(1761584..1761847) Desulfovibrio vulgaris RCH1 12868005 YP_005702335.1 CDS Deval_1542 NC_017310.1 1761989 1762231 R hypothetical protein complement(1761989..1762231) Desulfovibrio vulgaris RCH1 12868006 YP_005702336.1 CDS Deval_1543 NC_017310.1 1762242 1762484 R KEGG: kcr:Kcr_1527 DNA polymerase II large subunit; DNA polymerase II large subunit complement(1762242..1762484) Desulfovibrio vulgaris RCH1 12868007 YP_005702337.1 CDS Deval_1544 NC_017310.1 1762481 1762888 R PFAM: CI repressor; KEGG: dde:Dde_2949 DNA-binding protein, putative; CI repressor complement(1762481..1762888) Desulfovibrio vulgaris RCH1 12868008 YP_005702338.1 CDS Deval_1545 NC_017310.1 1762885 1762992 R hypothetical protein complement(1762885..1762992) Desulfovibrio vulgaris RCH1 12868009 YP_005702339.1 CDS Deval_1546 NC_017310.1 1762979 1763155 R hypothetical protein complement(1762979..1763155) Desulfovibrio vulgaris RCH1 12868010 YP_005702340.1 CDS Deval_1547 NC_017310.1 1763142 1763381 R KEGG: mkm:Mkms_5796 helicase domain-containing protein; hypothetical protein complement(1763142..1763381) Desulfovibrio vulgaris RCH1 12868011 YP_005702341.1 CDS Deval_1548 NC_017310.1 1763752 1764072 R KEGG: hypothetical protein; hypothetical protein complement(1763752..1764072) Desulfovibrio vulgaris RCH1 12868012 YP_005702342.1 CDS Deval_1549 NC_017310.1 1764101 1764976 R KEGG: bgl:bglu_1g23810 hypothetical protein; hypothetical protein complement(1764101..1764976) Desulfovibrio vulgaris RCH1 12868013 YP_005702343.1 CDS Deval_1550 NC_017310.1 1765105 1766871 R KEGG: sbn:Sbal195_0370 hypothetical protein; hypothetical protein complement(1765105..1766871) Desulfovibrio vulgaris RCH1 12868014 YP_005702344.1 CDS Deval_1551 NC_017310.1 1766858 1769803 R KEGG: bbt:BBta_1158 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase complement(1766858..1769803) Desulfovibrio vulgaris RCH1 12868015 YP_005702345.1 CDS Deval_1552 NC_017310.1 1769844 1770953 R KEGG: bbt:BBta_1159 putative 5-methylcytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase complement(1769844..1770953) Desulfovibrio vulgaris RCH1 12868016 YP_005702346.1 CDS Deval_1553 NC_017310.1 1771188 1771727 R KEGG: dsa:Desal_2151 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein complement(1771188..1771727) Desulfovibrio vulgaris RCH1 12868017 YP_005702347.1 CDS Deval_1554 NC_017310.1 1771794 1772036 D manually curated; PFAM: helix-turn-helix domain protein; KEGG: gka:GK0494 transcriptional repressor of PBSX genes; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1771794..1772036 Desulfovibrio vulgaris RCH1 12868018 YP_005702348.1 CDS Deval_1555 NC_017310.1 1772033 1772557 D KEGG: dsa:Desal_2384 hypothetical protein; hypothetical protein 1772033..1772557 Desulfovibrio vulgaris RCH1 12868019 YP_005702349.1 CDS Deval_1556 NC_017310.1 1772563 1772802 R TIGRFAM: prevent-host-death family protein; KEGG: azo:azo2023 hypothetical protein; prevent-host-death family protein complement(1772563..1772802) Desulfovibrio vulgaris RCH1 12868020 YP_005702350.1 CDS Deval_1557 NC_017310.1 1772891 1773229 R KEGG: hsa:100292623 hypothetical protein LOC100292623; hypothetical protein complement(1772891..1773229) Desulfovibrio vulgaris RCH1 12868021 YP_005702351.1 CDS Deval_1558 NC_017310.1 1773272 1774243 D KEGG: dsy:DSY2199 hypothetical protein; hypothetical protein 1773272..1774243 Desulfovibrio vulgaris RCH1 12868022 YP_005702352.1 CDS Deval_1559 NC_017310.1 1774240 1774641 D KEGG: nve:NEMVE_v1g206838 hypothetical protein; hypothetical protein 1774240..1774641 Desulfovibrio vulgaris RCH1 12868023 YP_005702353.1 CDS Deval_1560 NC_017310.1 1774656 1775702 R KEGG: ara:Arad_4108 hypothetical protein; hypothetical protein complement(1774656..1775702) Desulfovibrio vulgaris RCH1 12868024 YP_005702354.1 CDS Deval_1561 NC_017310.1 1775789 1776433 D PFAM: integrase family protein; KEGG: ctc:pE88_50 integrase/recombinase; integrase family protein 1775789..1776433 Desulfovibrio vulgaris RCH1 12868025 YP_005702355.1 CDS Deval_1562 NC_017310.1 1776411 1776608 D KEGG: bcv:Bcav_1256 DNA binding domain protein, excisionase family; excisionase family DNA binding domain-containing protein 1776411..1776608 Desulfovibrio vulgaris RCH1 12868026 YP_005702356.1 CDS Deval_1563 NC_017310.1 1776611 1776829 D KEGG: lxx:Lxx13200 acetolactate synthase 1 catalytic subunit; hypothetical protein 1776611..1776829 Desulfovibrio vulgaris RCH1 12868027 YP_005702357.1 CDS Deval_1564 NC_017310.1 1776936 1777130 R KEGG: mar:MAE_12670 hypothetical protein; hypothetical protein complement(1776936..1777130) Desulfovibrio vulgaris RCH1 12868028 YP_005702358.1 CDS Deval_1565 NC_017310.1 1777278 1781078 R KEGG: bpf:BpOF4_17205 hypothetical protein; hypothetical protein complement(1777278..1781078) Desulfovibrio vulgaris RCH1 12868029 YP_005702359.1 CDS Deval_1566 NC_017310.1 1781680 1781985 R TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mgm:Mmc1_2896 XRE family plasmid maintenance system antidote protein; SMART: helix-turn-helix domain protein; plasmid maintenance system antidote protein complement(1781680..1781985) Desulfovibrio vulgaris RCH1 12868030 YP_005702360.1 CDS Deval_1567 NC_017310.1 1781995 1782273 R PFAM: plasmid maintenance system killer; KEGG: mag:amb0661 plasmid maintenance system killer protein; plasmid maintenance system killer protein complement(1781995..1782273) Desulfovibrio vulgaris RCH1 12868031 YP_005702361.1 CDS Deval_1568 NC_017310.1 1782544 1782960 D KEGG: cro:ROD_26091 hypothetical protein; hypothetical protein 1782544..1782960 Desulfovibrio vulgaris RCH1 12868032 YP_005702362.1 CDS Deval_1569 NC_017310.1 1782960 1783310 D KEGG: plt:Plut_0821 hypothetical protein; hypothetical protein 1782960..1783310 Desulfovibrio vulgaris RCH1 12868033 YP_005702363.1 CDS Deval_1570 NC_017310.1 1783307 1783555 D KEGG: sme:SMc01942 urease accessory protein; urease accessory protein 1783307..1783555 Desulfovibrio vulgaris RCH1 12868034 YP_005702364.1 CDS Deval_1571 NC_017310.1 1783691 1784299 D KEGG: ajs:Ajs_0939 hypothetical protein; hypothetical protein 1783691..1784299 Desulfovibrio vulgaris RCH1 12868035 YP_005702365.1 CDS Deval_1572 NC_017310.1 1784286 1785890 D KEGG: dsa:Desal_2352 phage uncharacterized protein; phage protein 1784286..1785890 Desulfovibrio vulgaris RCH1 12868036 YP_005702366.1 CDS Deval_1573 NC_017310.1 1785887 1786441 D KEGG: dds:Ddes_0718 hypothetical protein; hypothetical protein 1785887..1786441 Desulfovibrio vulgaris RCH1 12868037 YP_005702367.1 CDS Deval_1574 NC_017310.1 1786438 1786791 D KEGG: ecg:E2348C_2756 hypothetical protein; hypothetical protein 1786438..1786791 Desulfovibrio vulgaris RCH1 12868038 YP_005702368.1 CDS Deval_1575 NC_017310.1 1786792 1788444 D KEGG: dde:Dde_2550 hypothetical protein; hypothetical protein 1786792..1788444 Desulfovibrio vulgaris RCH1 12868039 YP_005702369.1 CDS Deval_1576 NC_017310.1 1788444 1788776 D KEGG: dsa:Desal_1405 hypothetical protein; hypothetical protein 1788444..1788776 Desulfovibrio vulgaris RCH1 12868040 YP_005702370.1 CDS Deval_1577 NC_017310.1 1788773 1789612 D KEGG: dde:Dde_2548 hypothetical protein; hypothetical protein 1788773..1789612 Desulfovibrio vulgaris RCH1 12868041 YP_005702371.1 CDS Deval_1578 NC_017310.1 1789617 1790549 D KEGG: dde:Dde_2547 hypothetical protein; hypothetical protein 1789617..1790549 Desulfovibrio vulgaris RCH1 12868042 YP_005702372.1 CDS Deval_1579 NC_017310.1 1790606 1791007 D KEGG: ddr:Deide_02000 conserved hypothetical protein, precursor; hypothetical protein 1790606..1791007 Desulfovibrio vulgaris RCH1 12868043 YP_005702373.1 CDS Deval_1580 NC_017310.1 1791019 1791363 D KEGG: mxa:MXAN_3056 hypothetical protein; hypothetical protein 1791019..1791363 Desulfovibrio vulgaris RCH1 12868044 YP_005702374.1 CDS Deval_1581 NC_017310.1 1791405 1791992 D KEGG: dde:Dde_2546 hypothetical protein; hypothetical protein 1791405..1791992 Desulfovibrio vulgaris RCH1 12868045 YP_005702375.1 CDS Deval_1582 NC_017310.1 1792165 1794258 D KEGG: dde:Dde_2545 hypothetical protein; hypothetical protein 1792165..1794258 Desulfovibrio vulgaris RCH1 12868046 YP_005702376.1 CDS Deval_1583 NC_017310.1 1794267 1794902 D KEGG: dde:Dde_2543 hypothetical protein; hypothetical protein 1794267..1794902 Desulfovibrio vulgaris RCH1 12868047 YP_005702377.1 CDS Deval_1584 NC_017310.1 1795061 1796473 D KEGG: ade:Adeh_2705 response regulator receiver; hypothetical protein 1795061..1796473 Desulfovibrio vulgaris RCH1 12868048 YP_005702378.1 CDS Deval_1585 NC_017310.1 1797120 1797698 D KEGG: xca:xccb100_1252 hypothetical protein; hypothetical protein 1797120..1797698 Desulfovibrio vulgaris RCH1 12868049 YP_005702379.1 CDS Deval_1586 NC_017310.1 1797711 1799231 D KEGG: xca:xccb100_1251 type I site-specific DNA-methyltransferase catalytic subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; type I restriction-modification system, M subunit 1797711..1799231 Desulfovibrio vulgaris RCH1 12868050 YP_005702380.1 CDS Deval_1587 NC_017310.1 1799234 1800247 D KEGG: dap:Dacet_1979 hypothetical protein; hypothetical protein 1799234..1800247 Desulfovibrio vulgaris RCH1 12868051 YP_005702381.1 CDS Deval_1589 NC_017310.1 1800509 1801759 D PFAM: restriction modification system DNA specificity domain; KEGG: ypb:YPTS_4099 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 1800509..1801759 Desulfovibrio vulgaris RCH1 12868053 YP_005702382.1 CDS Deval_1590 NC_017310.1 1801786 1802013 D KEGG: tit:Thit_1410 protein of unknown function DUF2188; hypothetical protein 1801786..1802013 Desulfovibrio vulgaris RCH1 12868054 YP_005702383.1 CDS Deval_1591 NC_017310.1 1802192 1805491 D TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: xcb:XC_1204 HsdR protein; SMART: DEAD-like helicase; HsdR family type I site-specific deoxyribonuclease 1802192..1805491 Desulfovibrio vulgaris RCH1 12868055 YP_005702384.1 CDS Deval_1592 NC_017310.1 1805478 1806221 D PFAM: protein of unknown function DUF45; KEGG: ypb:YPTS_4096 hypothetical protein; hypothetical protein 1805478..1806221 Desulfovibrio vulgaris RCH1 12868056 YP_005702385.1 CDS Deval_1593 NC_017310.1 1806580 1807566 R KEGG: sse:Ssed_3640 hypothetical protein; hypothetical protein complement(1806580..1807566) Desulfovibrio vulgaris RCH1 12868057 YP_005702386.1 CDS Deval_1594 NC_017310.1 1807647 1808894 R PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: glo:Glov_0021 beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase complement(1807647..1808894) Desulfovibrio vulgaris RCH1 12868058 YP_005702387.1 CDS Deval_1595 NC_017310.1 1809674 1810132 D KEGG: npu:Npun_F5233 TatD-related deoxyribonuclease; hypothetical protein 1809674..1810132 Desulfovibrio vulgaris RCH1 12868059 YP_005702388.1 CDS Deval_1597 NC_017310.1 1810663 1811241 D manually curated; KEGG: apb:SAR116_2344 hypothetical protein; hypothetical protein 1810663..1811241 Desulfovibrio vulgaris RCH1 12868061 YP_005702389.1 CDS Deval_1598 NC_017310.1 1811244 1811612 D KEGG: apb:SAR116_2345 hypothetical protein; hypothetical protein 1811244..1811612 Desulfovibrio vulgaris RCH1 12868062 YP_005702390.1 CDS Deval_1599 NC_017310.1 1811605 1812114 D KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 1811605..1812114 Desulfovibrio vulgaris RCH1 12868063 YP_005702391.1 CDS Deval_1600 NC_017310.1 1812130 1812339 D TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator; phage/conjugal plasmid C-4 type zinc finger protein, TraR family 1812130..1812339 Desulfovibrio vulgaris RCH1 12868064 YP_005702392.1 CDS Deval_1601 NC_017310.1 1812603 1813607 D PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: dds:Ddes_1769 glutamyl-tRNA synthetase class Ic; glutamyl/glutaminyl-tRNA synthetase 1812603..1813607 Desulfovibrio vulgaris RCH1 12868066 YP_005702393.1 CDS Deval_1602 NC_017310.1 1813778 1814173 D KEGG: dps:DP2880 hypothetical protein; hypothetical protein 1813778..1814173 Desulfovibrio vulgaris RCH1 12868067 YP_005702394.1 CDS Deval_1603 NC_017310.1 1814473 1815048 R PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator; TetR family transcriptional regulator complement(1814473..1815048) Desulfovibrio vulgaris RCH1 12868068 YP_005702395.1 CDS Deval_1604 NC_017310.1 1815610 1816419 R KEGG: drt:Dret_1332 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1815610..1816419) Desulfovibrio vulgaris RCH1 12868069 YP_005702396.1 CDS Deval_1605 NC_017310.1 1816416 1817123 R KEGG: dde:Dde_1999 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(1816416..1817123) Desulfovibrio vulgaris RCH1 12868070 YP_005702397.1 CDS Deval_1606 NC_017310.1 1817120 1818355 R KEGG: dds:Ddes_1168 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; AAA ATPase complement(1817120..1818355) Desulfovibrio vulgaris RCH1 12868071 YP_005702398.1 CDS Deval_1607 NC_017310.1 1818352 1819101 R PFAM: protein of unknown function DUF558; KEGG: dde:Dde_1997 16S ribosomal RNA methyltransferase RsmE; hypothetical protein complement(1818352..1819101) Desulfovibrio vulgaris RCH1 12868072 YP_005702399.1 CDS Deval_1608 NC_017310.1 1819153 1820283 R KEGG: dde:Dde_1996 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; glycine cleavage system T protein complement(1819153..1820283) Desulfovibrio vulgaris RCH1 12868073 YP_005702400.1 CDS Deval_1609 NC_017310.1 1820280 1822016 R KEGG: dde:Dde_1995 hypothetical protein; hypothetical protein complement(1820280..1822016) Desulfovibrio vulgaris RCH1 12868074 YP_005702401.1 CDS Deval_1610 NC_017310.1 1822285 1823319 D KEGG: dds:Ddes_1171 putative GAF sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein; GAF domain-containing protein 1822285..1823319 Desulfovibrio vulgaris RCH1 12868075 YP_005702402.1 CDS Deval_1611 NC_017310.1 1823319 1824341 D KEGG: dde:Dde_1993 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein 1823319..1824341 Desulfovibrio vulgaris RCH1 12868076 YP_005702403.1 CDS Deval_1612 NC_017310.1 1824360 1825151 D PFAM: inositol monophosphatase; KEGG: dde:Dde_1992 inositol-1-monophosphatase; inositol monophosphatase 1824360..1825151 Desulfovibrio vulgaris RCH1 12868077 YP_005702404.1 CDS Deval_1613 NC_017310.1 1825109 1825645 R PFAM: NUDIX hydrolase; KEGG: dde:Dde_1991 isopentenyl-diphosphate delta-isomerase; NUDIX hydrolase complement(1825109..1825645) Desulfovibrio vulgaris RCH1 12868078 YP_005702405.1 CDS Deval_1614 NC_017310.1 1825668 1826162 D KEGG: dde:Dde_1990 SSU ribosomal protein S18P alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 1825668..1826162 Desulfovibrio vulgaris RCH1 12868079 YP_005702406.1 CDS Deval_1615 NC_017310.1 1826182 1826937 D TIGRFAM: triosephosphate isomerase; KEGG: dde:Dde_1989 triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1826182..1826937 Desulfovibrio vulgaris RCH1 12868080 YP_005702407.1 CDS Deval_1616 NC_017310.1 1826975 1827325 D KEGG: dds:Ddes_1177 preprotein translocase, SecG subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 1826975..1827325 Desulfovibrio vulgaris RCH1 12868081 YP_005702408.1 CDS Deval_1617 NC_017310.1 1827665 1827829 R KEGG: dsa:Desal_3111 hypothetical protein; hypothetical protein complement(1827665..1827829) Desulfovibrio vulgaris RCH1 12868083 YP_005702409.1 CDS Deval_1618 NC_017310.1 1827888 1828538 R PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dde:Dde_1980 transcriptional regulator, putative; putative phage repressor complement(1827888..1828538) Desulfovibrio vulgaris RCH1 12868084 YP_005702410.1 CDS Deval_1619 NC_017310.1 1829118 1830062 R PFAM: lipid A biosynthesis acyltransferase; KEGG: lip:LI0871 acyltransferase; lipid A biosynthesis acyltransferase complement(1829118..1830062) Desulfovibrio vulgaris RCH1 12868085 YP_005702411.1 CDS Deval_1620 NC_017310.1 1830059 1830685 R PFAM: protein of unknown function DUF374; KEGG: dde:Dde_1961 hypothetical protein; hypothetical protein complement(1830059..1830685) Desulfovibrio vulgaris RCH1 12868086 YP_005702412.1 CDS Deval_1621 NC_017310.1 1830682 1832487 R KEGG: dde:Dde_1960 lipid A export ATP-binding/permease protein MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; ABC transporter complement(1830682..1832487) Desulfovibrio vulgaris RCH1 12868087 YP_005702413.1 CDS Deval_1622 NC_017310.1 1832599 1833237 D TIGRFAM: selenium metabolism protein YedF; KEGG: dde:Dde_1959 hypothetical protein; selenium metabolism protein YedF 1832599..1833237 Desulfovibrio vulgaris RCH1 12868088 YP_005702414.1 CDS Deval_1623 NC_017310.1 1833234 1834112 D KEGG: dde:Dde_1958 pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 1833234..1834112 Desulfovibrio vulgaris RCH1 12868089 YP_005702415.1 CDS Deval_1624 NC_017310.1 1834292 1834969 R KEGG: dds:Ddes_1206 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(1834292..1834969) Desulfovibrio vulgaris RCH1 12868090 YP_005702416.1 CDS Deval_1625 NC_017310.1 1834987 1837317 R KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; cell division protein FtsK complement(1834987..1837317) Desulfovibrio vulgaris RCH1 12868091 YP_005702417.1 CDS Deval_1626 NC_017310.1 1837447 1838004 R KEGG: lip:LI0067 translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein; translation elongation factor P complement(1837447..1838004) Desulfovibrio vulgaris RCH1 12868092 YP_005702418.1 CDS Deval_1627 NC_017310.1 1838045 1838512 R KEGG: dde:Dde_1952 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase complement(1838045..1838512) Desulfovibrio vulgaris RCH1 12868093 YP_005702419.1 CDS Deval_1628 NC_017310.1 1838657 1839307 D KEGG: dde:Dde_1950 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis GTP-binding protein YsxC 1838657..1839307 Desulfovibrio vulgaris RCH1 12868094 YP_005702420.1 CDS Deval_1629 NC_017310.1 1839426 1840508 R PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative; YjgP/YjgQ family permease complement(1839426..1840508) Desulfovibrio vulgaris RCH1 12868095 YP_005702421.1 CDS Deval_1630 NC_017310.1 1840505 1841647 R PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative; YjgP/YjgQ family permease complement(1840505..1841647) Desulfovibrio vulgaris RCH1 12868096 YP_005702422.1 CDS Deval_1631 NC_017310.1 1841690 1841884 R KEGG: dds:Ddes_1419 hypothetical protein; hypothetical protein complement(1841690..1841884) Desulfovibrio vulgaris RCH1 12868097 YP_005702423.1 CDS Deval_1632 NC_017310.1 1842094 1842891 D KEGG: dsa:Desal_1889 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 1842094..1842891 Desulfovibrio vulgaris RCH1 12868098 YP_005702424.1 CDS Deval_1633 NC_017310.1 1843728 1844375 R KEGG: dsa:Desal_3009 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase complement(1843728..1844375) Desulfovibrio vulgaris RCH1 12868100 YP_005702425.1 CDS Deval_1634 NC_017310.1 1844633 1844932 R KEGG: dde:Dde_1968 TRASH; hypothetical protein complement(1844633..1844932) Desulfovibrio vulgaris RCH1 12868101 YP_005702426.1 CDS Deval_1635 NC_017310.1 1844957 1845382 R KEGG: dba:Dbac_1456 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1844957..1845382) Desulfovibrio vulgaris RCH1 12868102 YP_005702427.1 CDS Deval_1636 NC_017310.1 1845457 1846623 R KEGG: dde:Dde_1970 LL-diaminopimelate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: aminotransferase class I and II; LL-diaminopimelate aminotransferase complement(1845457..1846623) Desulfovibrio vulgaris RCH1 12868103 YP_005702428.1 CDS Deval_1637 NC_017310.1 1846816 1847781 D KEGG: dde:Dde_1971 tyrosine recombinase XerD subunit; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase XerD 1846816..1847781 Desulfovibrio vulgaris RCH1 12868104 YP_005702429.1 CDS Deval_1638 NC_017310.1 1847778 1850492 D PFAM: Polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_1972 CBS; Polynucleotide adenylyltransferase region 1847778..1850492 Desulfovibrio vulgaris RCH1 12868105 YP_005702430.1 CDS Deval_1639 NC_017310.1 1850579 1851079 D PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein; histidine triad (HIT) protein 1850579..1851079 Desulfovibrio vulgaris RCH1 12868106 YP_005702431.1 CDS Deval_1640 NC_017310.1 1851090 1851461 D KEGG: dde:Dde_1974 hypothetical protein; hypothetical protein 1851090..1851461 Desulfovibrio vulgaris RCH1 12868107 YP_005702432.1 CDS Deval_1641 NC_017310.1 1851476 1852600 D KEGG: dde:Dde_1975 hypothetical protein; hypothetical protein 1851476..1852600 Desulfovibrio vulgaris RCH1 12868108 YP_005702433.1 CDS Deval_1642 NC_017310.1 1852764 1855481 D TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; KEGG: dde:Dde_1976 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; DNA mismatch repair protein MutS 1852764..1855481 Desulfovibrio vulgaris RCH1 12868109 YP_005702434.1 CDS Deval_1643 NC_017310.1 1855465 1855905 D KEGG: dde:Dde_1977 putative lipoprotein; putative lipoprotein 1855465..1855905 Desulfovibrio vulgaris RCH1 12868110 YP_005702435.1 CDS Deval_1644 NC_017310.1 1855979 1857217 D KEGG: dde:Dde_1978 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 1855979..1857217 Desulfovibrio vulgaris RCH1 12868111 YP_005702436.1 CDS Deval_1645 NC_017310.1 1857443 1857886 R manually curated; PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dma:DMR_01870 putative arsenate reductase; SMART: Protein-tyrosine phosphatase, low molecular weight; protein-tyrosine phosphatase complement(1857443..1857886) Desulfovibrio vulgaris RCH1 12868112 YP_005702437.1 CDS Deval_1646 NC_017310.1 1858045 1858389 D manually curated; PFAM: regulatory protein ArsR; KEGG: dde:Dde_3721 ArsR family transcriptional regulator; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 1858045..1858389 Desulfovibrio vulgaris RCH1 12868113 YP_005702438.1 CDS Deval_1647 NC_017310.1 1858395 1859510 D PFAM: permease; KEGG: hha:Hhal_0589 permease; permease 1858395..1859510 Desulfovibrio vulgaris RCH1 12868114 YP_005702439.1 CDS Deval_1650 NC_017310.1 1860636 1860953 D KEGG: hypothetical protein; hypothetical protein 1860636..1860953 Desulfovibrio vulgaris RCH1 12868118 YP_005702440.1 CDS Deval_1651 NC_017310.1 1860993 1861295 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: dba:Dbac_2571 plasmid maintenance system antidote protein, XRE family; SMART: helix-turn-helix domain protein; plasmid maintenance system antidote protein 1860993..1861295 Desulfovibrio vulgaris RCH1 12868119 YP_005702441.1 CDS Deval_1652 NC_017310.1 1861316 1861639 R PFAM: Protein of unknown function DUF2590; KEGG: dds:Ddes_0254 hypothetical protein; hypothetical protein complement(1861316..1861639) Desulfovibrio vulgaris RCH1 12868120 YP_005702442.1 CDS Deval_1653 NC_017310.1 1861684 1861956 D PFAM: protein of unknown function DUF497; KEGG: dds:Ddes_0226 protein of unknown function DUF497; hypothetical protein 1861684..1861956 Desulfovibrio vulgaris RCH1 12868121 YP_005702443.1 CDS Deval_1654 NC_017310.1 1861934 1862176 D KEGG: dds:Ddes_0227 hypothetical protein; hypothetical protein 1861934..1862176 Desulfovibrio vulgaris RCH1 12868122 YP_005702444.1 CDS Deval_1655 NC_017310.1 1862272 1863204 R KEGG: vcj:VCD_002181 phage-related tail protein; hypothetical protein complement(1862272..1863204) Desulfovibrio vulgaris RCH1 12868123 YP_005702445.1 CDS Deval_1656 NC_017310.1 1863410 1864006 D PFAM: NADPH-dependent FMN reductase; KEGG: pin:Ping_0487 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1863410..1864006 Desulfovibrio vulgaris RCH1 12868124 YP_005702446.1 CDS Deval_1657 NC_017310.1 1864677 1865597 R KEGG: dde:Dde_1778 putative manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein; inorganic diphosphatase complement(1864677..1865597) Desulfovibrio vulgaris RCH1 12868125 YP_005702447.1 CDS Deval_1658 NC_017310.1 1865732 1866412 R KEGG: dde:Dde_1777 hypothetical protein; hypothetical protein complement(1865732..1866412) Desulfovibrio vulgaris RCH1 12868126 YP_005702448.1 CDS Deval_1659 NC_017310.1 1866429 1866890 R PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component; PTS system sorbose subfamily transporter subunit IIB complement(1866429..1866890) Desulfovibrio vulgaris RCH1 12868127 YP_005702449.1 CDS Deval_1660 NC_017310.1 1866892 1867329 R PFAM: PTS system fructose subfamily IIA component; KEGG: dde:Dde_1775 PTS system, IIA component; PTS system fructose subfamily transporter subunit IIA complement(1866892..1867329) Desulfovibrio vulgaris RCH1 12868128 YP_005702450.1 CDS Deval_1661 NC_017310.1 1867358 1868269 R KEGG: dde:Dde_1774 hypothetical protein; hypothetical protein complement(1867358..1868269) Desulfovibrio vulgaris RCH1 12868129 YP_005702451.1 CDS Deval_1662 NC_017310.1 1868278 1868727 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 putative PTS IIA-like nitrogen-regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN complement(1868278..1868727) Desulfovibrio vulgaris RCH1 12868130 YP_005702452.1 CDS Deval_1663 NC_017310.1 1868737 1869276 R KEGG: dde:Dde_1772 SSU ribosomal protein S30P / sigma 54 modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; ribosomal subunit interface protein complement(1868737..1869276) Desulfovibrio vulgaris RCH1 12868131 YP_005702453.1 CDS Deval_1664 NC_017310.1 1869335 1870765 R KEGG: dde:Dde_1771 sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; RNA polymerase sigma 54 subunit RpoN complement(1869335..1870765) Desulfovibrio vulgaris RCH1 12868132 YP_005702454.1 CDS Deval_1665 NC_017310.1 1870909 1871634 R KEGG: dde:Dde_1770 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1870909..1871634) Desulfovibrio vulgaris RCH1 12868133 YP_005702455.1 CDS Deval_1666 NC_017310.1 1871631 1872221 R PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein; OstA family protein complement(1871631..1872221) Desulfovibrio vulgaris RCH1 12868134 YP_005702456.1 CDS Deval_1667 NC_017310.1 1872231 1872875 R PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein; hypothetical protein complement(1872231..1872875) Desulfovibrio vulgaris RCH1 12868135 YP_005702457.1 CDS Deval_1668 NC_017310.1 1872872 1873399 R KEGG: dde:Dde_1767 phosphatase KdsC; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1872872..1873399) Desulfovibrio vulgaris RCH1 12868136 YP_005702458.1 CDS Deval_1669 NC_017310.1 1873389 1874210 R KEGG: dde:Dde_1766 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1873389..1874210) Desulfovibrio vulgaris RCH1 12868137 YP_005702459.1 CDS Deval_1670 NC_017310.1 1874280 1875923 R TIGRFAM: CTP synthase; KEGG: dde:Dde_1765 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CTP synthase complement(1874280..1875923) Desulfovibrio vulgaris RCH1 12868138 YP_005702460.1 CDS Deval_1671 NC_017310.1 1876180 1876989 D KEGG: dde:Dde_1764 phosphoribosylformylglycinamidine synthase I; Phosphoribosylformylglycinamidine synthase 1876180..1876989 Desulfovibrio vulgaris RCH1 12868139 YP_005702461.1 CDS Deval_1672 NC_017310.1 1877042 1877515 D KEGG: dde:Dde_1763 hypothetical protein; hypothetical protein 1877042..1877515 Desulfovibrio vulgaris RCH1 12868140 YP_005702462.1 CDS Deval_1673 NC_017310.1 1877661 1878083 D KEGG: dal:Dalk_4092 hypothetical protein; hypothetical protein 1877661..1878083 Desulfovibrio vulgaris RCH1 12868141 YP_005702463.1 CDS Deval_1674 NC_017310.1 1878185 1878427 R KEGG: dsa:Desal_2490 hypothetical protein; hypothetical protein complement(1878185..1878427) Desulfovibrio vulgaris RCH1 12868142 YP_005702464.1 CDS Deval_1675 NC_017310.1 1878432 1879967 R TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: dde:Dde_1757 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; phosphoglycerate mutase complement(1878432..1879967) Desulfovibrio vulgaris RCH1 12868143 YP_005702465.1 CDS Deval_1676 NC_017310.1 1879964 1880368 R KEGG: dde:Dde_1756 iojap-related protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein complement(1879964..1880368) Desulfovibrio vulgaris RCH1 12868144 YP_005702466.1 CDS Deval_1677 NC_017310.1 1880381 1880974 R PFAM: nitroreductase; KEGG: dds:Ddes_2259 nitroreductase; nitroreductase complement(1880381..1880974) Desulfovibrio vulgaris RCH1 12868145 YP_005702467.1 CDS Deval_1678 NC_017310.1 1881160 1882467 D KEGG: dde:Dde_2084 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; phenylacetate--CoA ligase 1881160..1882467 Desulfovibrio vulgaris RCH1 12868146 YP_005702468.1 CDS Deval_1679 NC_017310.1 1882879 1883409 R KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(1882879..1883409) Desulfovibrio vulgaris RCH1 12868147 YP_005702469.1 CDS Deval_1680 NC_017310.1 1883423 1884481 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2086 putative glutamate synthase subunit beta; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1883423..1884481) Desulfovibrio vulgaris RCH1 12868148 YP_005702470.1 CDS Deval_1681 NC_017310.1 1884703 1885134 D PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein; amino acid-binding ACT protein 1884703..1885134 Desulfovibrio vulgaris RCH1 12868149 YP_005702471.1 CDS Deval_1682 NC_017310.1 1885415 1887343 D PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2090 molybdopterin oxidoreductase domain-containing protein; molybdopterin oxidoreductase 1885415..1887343 Desulfovibrio vulgaris RCH1 12868150 YP_005702472.1 CDS Deval_1683 NC_017310.1 1887520 1889199 R TIGRFAM: NAD+ synthetase; KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase complement(1887520..1889199) Desulfovibrio vulgaris RCH1 12868151 YP_005702473.1 CDS Deval_1684 NC_017310.1 1889200 1889979 R TIGRFAM: dihydrodipicolinate reductase; KEGG: dde:Dde_2092 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(1889200..1889979) Desulfovibrio vulgaris RCH1 12868152 YP_005702474.1 CDS Deval_1685 NC_017310.1 1890141 1892597 R TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; KEGG: dde:Dde_2093 DNA ligase, NAD-dependent; SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; NAD-dependent DNA ligase complement(1890141..1892597) Desulfovibrio vulgaris RCH1 12868153 YP_005702475.1 CDS Deval_1686 NC_017310.1 1892594 1893340 R KEGG: dde:Dde_2094 hypothetical protein; hypothetical protein complement(1892594..1893340) Desulfovibrio vulgaris RCH1 12868154 YP_005702476.1 CDS Deval_1687 NC_017310.1 1893341 1894384 R PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein; TrkA-N domain-containing protein complement(1893341..1894384) Desulfovibrio vulgaris RCH1 12868155 YP_005702477.1 CDS Deval_1688 NC_017310.1 1894390 1896423 R TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: dde:Dde_2096 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein; excinuclease ABC subunit B complement(1894390..1896423) Desulfovibrio vulgaris RCH1 12868156 YP_005702478.1 CDS Deval_1689 NC_017310.1 1896516 1897001 D KEGG: dde:Dde_2097 hypothetical protein; hypothetical protein 1896516..1897001 Desulfovibrio vulgaris RCH1 12868157 YP_005702479.1 CDS Deval_1690 NC_017310.1 1897008 1897712 R TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: dde:Dde_2098 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase complement(1897008..1897712) Desulfovibrio vulgaris RCH1 12868158 YP_005702480.1 CDS Deval_1691 NC_017310.1 1897709 1900039 R TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: dde:Dde_2099 ATPase; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(1897709..1900039) Desulfovibrio vulgaris RCH1 12868159 YP_005702481.1 CDS Deval_1692 NC_017310.1 1900039 1900353 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dde:Dde_2100 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(1900039..1900353) Desulfovibrio vulgaris RCH1 12868160 YP_005702482.1 CDS Deval_1693 NC_017310.1 1900444 1901055 R PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase; adenylate cyclase complement(1900444..1901055) Desulfovibrio vulgaris RCH1 12868161 YP_005702483.1 CDS Deval_1694 NC_017310.1 1901094 1901468 D KEGG: dde:Dde_2102 camphor resistance protein CrcB; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein 1901094..1901468 Desulfovibrio vulgaris RCH1 12868162 YP_005702484.1 CDS Deval_1695 NC_017310.1 1901513 1901857 D PFAM: protein of unknown function DUF190; KEGG: dde:Dde_2103 hypothetical protein; hypothetical protein 1901513..1901857 Desulfovibrio vulgaris RCH1 12868163 YP_005702485.1 CDS Deval_1696 NC_017310.1 1902060 1902197 R hypothetical protein complement(1902060..1902197) Desulfovibrio vulgaris RCH1 12868164 YP_005702486.1 CDS Deval_1697 NC_017310.1 1902253 1902909 R KEGG: dma:DMR_21020 sulfite reductase; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite reductase (NAD(P)H) complement(1902253..1902909) Desulfovibrio vulgaris RCH1 12868165 YP_005702487.1 CDS Deval_1698 NC_017310.1 1902933 1904006 R PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_2104 response regulator receiver domain-containing protein; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase complement(1902933..1904006) Desulfovibrio vulgaris RCH1 12868166 YP_005702488.1 CDS Deval_1699 NC_017310.1 1904009 1904908 R PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_2105 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR complement(1904009..1904908) Desulfovibrio vulgaris RCH1 12868167 YP_005702489.1 CDS Deval_1700 NC_017310.1 1904908 1907034 R KEGG: dde:Dde_2106 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; CheA signal transduction histidine kinase complement(1904908..1907034) Desulfovibrio vulgaris RCH1 12868168 YP_005702490.1 CDS Deval_1701 NC_017310.1 1907102 1907464 R KEGG: dba:Dbac_1417 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(1907102..1907464) Desulfovibrio vulgaris RCH1 12868169 YP_005702491.1 CDS Deval_1702 NC_017310.1 1907491 1909233 R KEGG: dde:Dde_2108 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1907491..1909233) Desulfovibrio vulgaris RCH1 12868170 YP_005702492.1 CDS Deval_1703 NC_017310.1 1909550 1910920 R KEGG: dde:Dde_2110 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein RadA complement(1909550..1910920) Desulfovibrio vulgaris RCH1 12868171 YP_005702493.1 CDS Deval_1704 NC_017310.1 1910933 1911721 R TIGRFAM: MJ0042 family finger-like protein; KEGG: lip:LI0615 hypothetical protein; hypothetical protein complement(1910933..1911721) Desulfovibrio vulgaris RCH1 12868172 YP_005702494.1 CDS Deval_1705 NC_017310.1 1911752 1912282 R TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(1911752..1912282) Desulfovibrio vulgaris RCH1 12866287 YP_005702495.1 CDS Deval_1706 NC_017310.1 1912363 1912827 R PFAM: GCN5-related N-acetyltransferase; KEGG: dba:Dbac_1857 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1912363..1912827) Desulfovibrio vulgaris RCH1 12866288 YP_005702496.1 CDS Deval_1707 NC_017310.1 1912827 1913294 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2114 thioredoxin family protein; alkyl hydroperoxide reductase complement(1912827..1913294) Desulfovibrio vulgaris RCH1 12866289 YP_005702497.1 CDS Deval_1708 NC_017310.1 1913321 1915735 R PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent); homocysteine S-methyltransferase complement(1913321..1915735) Desulfovibrio vulgaris RCH1 12866290 YP_005702498.1 CDS Deval_1709 NC_017310.1 1915941 1917011 D KEGG: dde:Dde_2116 sigma 70 family protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; sigma-70 family RNA polymerase sigma factor 1915941..1917011 Desulfovibrio vulgaris RCH1 12866291 YP_005702499.1 CDS Deval_1710 NC_017310.1 1917026 1918714 D PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2117 TPR repeat-containing protein; hypothetical protein 1917026..1918714 Desulfovibrio vulgaris RCH1 12866292 YP_005702500.1 CDS Deval_1711 NC_017310.1 1918711 1919550 D KEGG: dds:Ddes_1445 hypothetical protein; hypothetical protein 1918711..1919550 Desulfovibrio vulgaris RCH1 12866293 YP_005702501.1 CDS Deval_1712 NC_017310.1 1919565 1919915 D KEGG: drt:Dret_0853 hypothetical protein; hypothetical protein 1919565..1919915 Desulfovibrio vulgaris RCH1 12866294 YP_005702502.1 CDS Deval_1713 NC_017310.1 1919929 1920372 D TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: dde:Dde_2120 ribose-5-phosphate isomerase; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 1919929..1920372 Desulfovibrio vulgaris RCH1 12866295 YP_005702503.1 CDS Deval_1714 NC_017310.1 1920389 1921846 D TIGRFAM: cysteinyl-tRNA synthetase; KEGG: dde:Dde_2121 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; cysteinyl-tRNA synthetase 1920389..1921846 Desulfovibrio vulgaris RCH1 12866296 YP_005702504.1 CDS Deval_1715 NC_017310.1 1921852 1923297 D KEGG: dde:Dde_2122 TPR repeat-containing protein; PFAM: peptidase M48 Ste24p; SMART: Tetratricopeptide repeat; peptidase M48 Ste24p 1921852..1923297 Desulfovibrio vulgaris RCH1 12866297 YP_005702505.1 CDS Deval_1716 NC_017310.1 1923273 1923422 R hypothetical protein complement(1923273..1923422) Desulfovibrio vulgaris RCH1 12866298 YP_005702506.1 CDS Deval_1717 NC_017310.1 1923459 1924004 D PFAM: 20S proteasome A and B subunits; KEGG: dde:Dde_2124 ATP-dependent protease peptidase subunit; 20S proteasome A and B subunits 1923459..1924004 Desulfovibrio vulgaris RCH1 12866299 YP_005702507.1 CDS Deval_1718 NC_017310.1 1924001 1924861 D KEGG: dde:Dde_2125 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1924001..1924861 Desulfovibrio vulgaris RCH1 12866300 YP_005702508.1 CDS Deval_1719 NC_017310.1 1924983 1925921 D TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: dde:Dde_2126 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 1924983..1925921 Desulfovibrio vulgaris RCH1 12866302 YP_005702509.1 CDS Deval_1720 NC_017310.1 1925971 1926543 D KEGG: dds:Ddes_1452 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 1925971..1926543 Desulfovibrio vulgaris RCH1 12866303 YP_005702510.1 CDS Deval_1721 NC_017310.1 1926658 1927263 D TIGRFAM: peptidyl-tRNA hydrolase; KEGG: dde:Dde_2128 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1926658..1927263 Desulfovibrio vulgaris RCH1 12866304 YP_005702511.1 CDS Deval_1722 NC_017310.1 1927378 1927893 D PFAM: transcription factor CarD; KEGG: dde:Dde_2129 CarD family transcriptional regulator; CarD family transcriptional regulator 1927378..1927893 Desulfovibrio vulgaris RCH1 12866305 YP_005702512.1 CDS Deval_1723 NC_017310.1 1928220 1929470 D TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: dde:Dde_2130 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase; transcription termination factor Rho 1928220..1929470 Desulfovibrio vulgaris RCH1 12866306 YP_005702513.1 CDS Deval_1724 NC_017310.1 1929925 1930779 R TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; KEGG: dde:Dde_1793 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta complement(1929925..1930779) Desulfovibrio vulgaris RCH1 12866307 YP_005702514.1 CDS Deval_1725 NC_017310.1 1930776 1932512 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(1930776..1932512) Desulfovibrio vulgaris RCH1 12866308 YP_005702515.1 CDS Deval_1726 NC_017310.1 1932585 1933094 R KEGG: dde:Dde_1791 ferritin; PFAM: Ferritin Dps family protein; ferroxidase complement(1932585..1933094) Desulfovibrio vulgaris RCH1 12866309 YP_005702516.1 CDS Deval_1727 NC_017310.1 1933258 1933470 D KEGG: dde:Dde_1790 hypothetical protein; hypothetical protein 1933258..1933470 Desulfovibrio vulgaris RCH1 12866310 YP_005702517.1 CDS Deval_1728 NC_017310.1 1933480 1934154 R PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dba:Dbac_0931 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase complement(1933480..1934154) Desulfovibrio vulgaris RCH1 12866311 YP_005702518.1 CDS Deval_1729 NC_017310.1 1934231 1934668 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sfu:Sfum_0223 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1934231..1934668 Desulfovibrio vulgaris RCH1 12866312 YP_005702519.1 CDS Deval_1730 NC_017310.1 1935133 1935483 D KEGG: cqu:CpipJ_CPIJ016529 beadex; hypothetical protein 1935133..1935483 Desulfovibrio vulgaris RCH1 12866316 YP_005702520.1 CDS Deval_1731 NC_017310.1 1935680 1938799 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; response regulator receiver; KEGG: dba:Dbac_1424 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor hybrid histidine kinase complement(1935680..1938799) Desulfovibrio vulgaris RCH1 12866317 YP_005702521.1 CDS Deval_1732 NC_017310.1 1939054 1941948 D KEGG: app:CAP2UW1_3853 metal dependent phosphohydrolase; PFAM: GAF domain protein; histidine kinase HAMP region domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1939054..1941948 Desulfovibrio vulgaris RCH1 12866318 YP_005702522.1 CDS Deval_1733 NC_017310.1 1942007 1942378 R PFAM: regulatory protein LysR; KEGG: dde:Dde_3521 Fis family transcriptional regulator; putative ModE family transcriptional regulator complement(1942007..1942378) Desulfovibrio vulgaris RCH1 12866319 YP_005702523.1 CDS Deval_1734 NC_017310.1 1942609 1943628 D PFAM: molybdopterin binding domain; KEGG: dde:Dde_3538 molybdenum cofactor cytidylyltransferase; molybdopterin binding domain-containing protein 1942609..1943628 Desulfovibrio vulgaris RCH1 12866320 YP_005702524.1 CDS Deval_1735 NC_017310.1 1943747 1946467 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; [2Fe-2S]-binding domain-containing protein; ferredoxin; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 1943747..1946467 Desulfovibrio vulgaris RCH1 12866321 YP_005702525.1 CDS Deval_1736 NC_017310.1 1946538 1948931 D PFAM: glucose-inhibited division protein A; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3540 aldehyde dehydrogenase, iron-sulfur subunit; glucose-inhibited division protein A 1946538..1948931 Desulfovibrio vulgaris RCH1 12866322 YP_005702526.1 CDS Deval_1737 NC_017310.1 1948928 1949143 D KEGG: dsa:Desal_0297 hypothetical protein; hypothetical protein 1948928..1949143 Desulfovibrio vulgaris RCH1 12866323 YP_005702527.1 CDS Deval_1738 NC_017310.1 1949140 1950045 D PFAM: Methyltransferase type 11; KEGG: dde:Dde_3542 ubiquinone/menaquinone biosynthesis methylase-like protein; type 11 methyltransferase 1949140..1950045 Desulfovibrio vulgaris RCH1 12866324 YP_005702528.1 CDS Deval_1739 NC_017310.1 1950050 1950502 D PFAM: C_GCAxxG_C_C family protein; KEGG: dde:Dde_3543 hypothetical protein; C_GCAxxG_C_C family protein 1950050..1950502 Desulfovibrio vulgaris RCH1 12866325 YP_005702529.1 CDS Deval_1740 NC_017310.1 1950502 1952133 D KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 1950502..1952133 Desulfovibrio vulgaris RCH1 12866326 YP_005702530.1 CDS Deval_1741 NC_017310.1 1952130 1953479 D KEGG: dde:Dde_3545 coenzyme F390 synthetase-like; manually curated; PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1952130..1953479 Desulfovibrio vulgaris RCH1 12866327 YP_005702531.1 CDS Deval_1742 NC_017310.1 1953497 1954627 D PFAM: protein of unknown function DUF182; KEGG: dde:Dde_3546 xanthine dehydrogenase accessory factor; hypothetical protein 1953497..1954627 Desulfovibrio vulgaris RCH1 12866328 YP_005702532.1 CDS Deval_1743 NC_017310.1 1954765 1956192 D KEGG: dde:Dde_3547 MobA-like protein-like; PFAM: metal-dependent phosphohydrolase HD sub domain; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1954765..1956192 Desulfovibrio vulgaris RCH1 12866329 YP_005702533.1 CDS Deval_1744 NC_017310.1 1956256 1956906 D PFAM: Phosphoglycerate mutase; KEGG: dde:Dde_3550 fructose-2 6-bisphosphatase-like protein; phosphoglycerate mutase 1956256..1956906 Desulfovibrio vulgaris RCH1 12866330 YP_005702534.1 CDS Deval_1745 NC_017310.1 1956988 1957740 R PFAM: Methyltransferase type 11; KEGG: mem:Memar_0889 methyltransferase type 11; type 11 methyltransferase complement(1956988..1957740) Desulfovibrio vulgaris RCH1 12866331 YP_005702535.1 CDS Deval_1746 NC_017310.1 1958040 1959254 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dba:Dbac_1993 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(1958040..1959254) Desulfovibrio vulgaris RCH1 12866332 YP_005702536.1 CDS Deval_1747 NC_017310.1 1959405 1961030 D PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; PAS fold-3 domain protein; KEGG: dba:Dbac_1994 putative PAS/PAC sensor protein; CI repressor 1959405..1961030 Desulfovibrio vulgaris RCH1 12866333 YP_005702537.1 CDS Deval_1748 NC_017310.1 1961312 1961428 D hypothetical protein 1961312..1961428 Desulfovibrio vulgaris RCH1 12866334 YP_005702538.1 CDS Deval_1749 NC_017310.1 1961425 1968741 D KEGG: azl:AZL_c04560 hemolysin-type calcium-binding region; hypothetical protein 1961425..1968741 Desulfovibrio vulgaris RCH1 12866335 YP_005702539.1 CDS Deval_1750 NC_017310.1 1968981 1971404 D PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 1968981..1971404 Desulfovibrio vulgaris RCH1 12866336 YP_005702540.1 CDS Deval_1751 NC_017310.1 1971709 1974252 R TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; helicase-associated domain protein; KEGG: mag:amb1260 HrpA-like helicase; SMART: helicase-associated domain protein; DEAD-like helicase ; helicase domain protein; ATP-dependent helicase HrpB complement(1971709..1974252) Desulfovibrio vulgaris RCH1 12866337 YP_005702541.1 CDS Deval_1752 NC_017310.1 1974461 1974688 D KEGG: putative signal peptide protein; hypothetical protein 1974461..1974688 Desulfovibrio vulgaris RCH1 12866338 YP_005702542.1 CDS Deval_1753 NC_017310.1 1974866 1975267 D KEGG: dwi:Dwil_GK21172 GK21172 gene product from transcript GK21172-RA; hypothetical protein 1974866..1975267 Desulfovibrio vulgaris RCH1 12866339 YP_005702543.1 CDS Deval_1754 NC_017310.1 1975373 1976227 D KEGG: azl:AZL_a03620 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; formyltetrahydrofolate deformylase 1975373..1976227 Desulfovibrio vulgaris RCH1 12866340 YP_005702544.1 CDS Deval_1755 NC_017310.1 1976419 1977402 D TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: dde:Dde_1796 fructose 1,6-bisphosphatase II; PFAM: GlpX family protein; fructose-1,6-bisphosphatase 1976419..1977402 Desulfovibrio vulgaris RCH1 12866341 YP_005702545.1 CDS Deval_1756 NC_017310.1 1977505 1978029 D KEGG: dde:Dde_1795 hypothetical protein; hypothetical protein 1977505..1978029 Desulfovibrio vulgaris RCH1 12866342 YP_005702546.1 CDS Deval_1757 NC_017310.1 1978293 1978859 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: dds:Ddes_2078 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(1978293..1978859) Desulfovibrio vulgaris RCH1 12866343 YP_005702547.1 CDS Deval_1758 NC_017310.1 1978989 1980119 R PFAM: Lytic transglycosylase catalytic; KEGG: dds:Ddes_2079 lytic transglycosylase catalytic; lytic transglycosylase complement(1978989..1980119) Desulfovibrio vulgaris RCH1 12866344 YP_005702548.1 CDS Deval_1759 NC_017310.1 1980250 1980771 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_3014 protein of unknown function DUF395 YeeE/YedE; hypothetical protein complement(1980250..1980771) Desulfovibrio vulgaris RCH1 12866345 YP_005702549.1 CDS Deval_1760 NC_017310.1 1980771 1981283 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pca:Pcar_2856 hypothetical protein; hypothetical protein complement(1980771..1981283) Desulfovibrio vulgaris RCH1 12866346 YP_005702550.1 CDS Deval_1761 NC_017310.1 1981433 1982362 R TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dde:Dde_1784 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1981433..1982362) Desulfovibrio vulgaris RCH1 12866347 YP_005702551.1 CDS Deval_1762 NC_017310.1 1982359 1982919 R TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dde:Dde_1783 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(1982359..1982919) Desulfovibrio vulgaris RCH1 12866348 YP_005702552.1 CDS Deval_1763 NC_017310.1 1982895 1983467 R KEGG: dde:Dde_1782 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein CHP00095; methyltransferase complement(1982895..1983467) Desulfovibrio vulgaris RCH1 12866349 YP_005702553.1 CDS Deval_1764 NC_017310.1 1983593 1985203 R PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase complement(1983593..1985203) Desulfovibrio vulgaris RCH1 12866350 YP_005702554.1 CDS Deval_1765 NC_017310.1 1985340 1985996 D PFAM: Conserved hypothetical protein CHP00730; KEGG: dde:Dde_1780 hypothetical protein; hypothetical protein 1985340..1985996 Desulfovibrio vulgaris RCH1 12866351 YP_005702555.1 CDS Deval_1766 NC_017310.1 1986058 1986702 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: lip:LI0343 cytosine/adenosine deaminases; CMP/dCMP deaminase zinc-binding protein 1986058..1986702 Desulfovibrio vulgaris RCH1 12866352 YP_005702556.1 CDS Deval_1767 NC_017310.1 1987316 1988509 D PFAM: integrase family protein; KEGG: drt:Dret_1610 integrase family protein; integrase family protein 1987316..1988509 Desulfovibrio vulgaris RCH1 12866354 YP_005702557.1 CDS Deval_1768 NC_017310.1 1988448 1988756 R PFAM: Prophage CP4-57 regulatory; KEGG: ddf:DEFDS_0278 transcriptional regulator; Prophage CP4-57 regulatory protein complement(1988448..1988756) Desulfovibrio vulgaris RCH1 12866355 YP_005702558.1 CDS Deval_1769 NC_017310.1 1989088 1990080 R KEGG: sus:Acid_0929 hypothetical protein; hypothetical protein complement(1989088..1990080) Desulfovibrio vulgaris RCH1 12866356 YP_005702559.1 CDS Deval_1770 NC_017310.1 1990100 1990996 R PFAM: protein of unknown function DUF1351; KEGG: cbb:CLD_2425 hypothetical protein; hypothetical protein complement(1990100..1990996) Desulfovibrio vulgaris RCH1 12866357 YP_005702560.1 CDS Deval_1771 NC_017310.1 1990999 1992027 R KEGG: gsu:GSU2152 hypothetical protein; hypothetical protein complement(1990999..1992027) Desulfovibrio vulgaris RCH1 12866358 YP_005702561.1 CDS Deval_1772 NC_017310.1 1992073 1992369 R KEGG: cef:CE2282 valyl-tRNA synthetase; hypothetical protein complement(1992073..1992369) Desulfovibrio vulgaris RCH1 12866359 YP_005702562.1 CDS Deval_1773 NC_017310.1 1992372 1992521 R hypothetical protein complement(1992372..1992521) Desulfovibrio vulgaris RCH1 12866360 YP_005702563.1 CDS Deval_1774 NC_017310.1 1993067 1994053 R KEGG: saf:SULAZ_1348 flagellum-specific ATP synthase; hypothetical protein complement(1993067..1994053) Desulfovibrio vulgaris RCH1 12866361 YP_005702564.1 CDS Deval_1775 NC_017310.1 1994111 1994764 R PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: dsa:Desal_3112 putative phage repressor; putative phage repressor complement(1994111..1994764) Desulfovibrio vulgaris RCH1 12866362 YP_005702565.1 CDS Deval_1776 NC_017310.1 1994821 1995111 D manually curated; PFAM: helix-turn-helix domain protein; KEGG: sto:ST2084 transcriptional regulator; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1994821..1995111 Desulfovibrio vulgaris RCH1 12866363 YP_005702566.1 CDS Deval_1777 NC_017310.1 1995322 1995735 D KEGG: dma:DMR_05660 hypothetical protein; hypothetical protein 1995322..1995735 Desulfovibrio vulgaris RCH1 12866364 YP_005702567.1 CDS Deval_1778 NC_017310.1 1995735 1996091 D KEGG: rci:RCIX1121 DNA polymerase II small subunit; hypothetical protein 1995735..1996091 Desulfovibrio vulgaris RCH1 12866365 YP_005702568.1 CDS Deval_1779 NC_017310.1 1996288 1997757 D KEGG: bte:BTH_II1364 DNA methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 1996288..1997757 Desulfovibrio vulgaris RCH1 12866366 YP_005702569.1 CDS Deval_1780 NC_017310.1 1998736 1999143 D KEGG: azl:AZL_c00010 hypothetical protein; hypothetical protein 1998736..1999143 Desulfovibrio vulgaris RCH1 12866367 YP_005702570.1 CDS Deval_1781 NC_017310.1 1999140 1999634 D KEGG: bmj:BMULJ_04647 bacteriophage protein; hypothetical protein 1999140..1999634 Desulfovibrio vulgaris RCH1 12866368 YP_005702571.1 CDS Deval_1782 NC_017310.1 1999621 1999881 D KEGG: cim:CIMG_05837 hypothetical protein; hypothetical protein 1999621..1999881 Desulfovibrio vulgaris RCH1 12866369 YP_005702572.1 CDS Deval_1783 NC_017310.1 2000223 2000786 D KEGG: ddf:DEFDS_0627 hypothetical protein; hypothetical protein 2000223..2000786 Desulfovibrio vulgaris RCH1 12866370 YP_005702573.1 CDS Deval_1784 NC_017310.1 2001332 2001739 D KEGG: mag:amb1193 hypothetical protein; hypothetical protein 2001332..2001739 Desulfovibrio vulgaris RCH1 12866371 YP_005702574.1 CDS Deval_1785 NC_017310.1 2001739 2002089 D KEGG: dds:Ddes_0722 hypothetical protein; hypothetical protein 2001739..2002089 Desulfovibrio vulgaris RCH1 12866372 YP_005702575.1 CDS Deval_1786 NC_017310.1 2002086 2002334 D KEGG: sme:SMc01942 urease accessory protein; hypothetical protein 2002086..2002334 Desulfovibrio vulgaris RCH1 12866373 YP_005702576.1 CDS Deval_1787 NC_017310.1 2002354 2002752 D KEGG: bpm:BURPS1710b_1677 GP70; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 2002354..2002752 Desulfovibrio vulgaris RCH1 12866374 YP_005702577.1 CDS Deval_1788 NC_017310.1 2002836 2003303 D KEGG: rsh:Rsph17029_0646 P27 family phage terminase small subunit; manually curated; TIGRFAM: phage terminase, small subunit, , P27 family; phage terminase, small subunit, , P27 family 2002836..2003303 Desulfovibrio vulgaris RCH1 12866375 YP_005702578.1 CDS Deval_1789 NC_017310.1 2003308 2005005 D PFAM: Terminase; KEGG: bph:Bphy_7140 terminase; terminase 2003308..2005005 Desulfovibrio vulgaris RCH1 12866376 YP_005702579.1 CDS Deval_1790 NC_017310.1 2005005 2006264 D KEGG: pmy:Pmen_3972 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; phage portal protein, HK97 family 2005005..2006264 Desulfovibrio vulgaris RCH1 12866377 YP_005702580.1 CDS Deval_1791 NC_017310.1 2006257 2006991 D PFAM: peptidase S14 ClpP; KEGG: lhk:LHK_01773 ATP-dependent Clp protease proteolytic subunit; peptidase S14 ClpP 2006257..2006991 Desulfovibrio vulgaris RCH1 12866378 YP_005702581.1 CDS Deval_1792 NC_017310.1 2006988 2007101 D hypothetical protein 2006988..2007101 Desulfovibrio vulgaris RCH1 12866379 YP_005702582.1 CDS Deval_1793 NC_017310.1 2007196 2008392 D TIGRFAM: phage major capsid protein, HK97 family; KEGG: mno:Mnod_7329 phage major capsid protein, HK97 family; phage major capsid protein, HK97 family 2007196..2008392 Desulfovibrio vulgaris RCH1 12866380 YP_005702583.1 CDS Deval_1794 NC_017310.1 2008438 2008707 D KEGG: uma:UM02528.1 hypothetical protein; hypothetical protein 2008438..2008707 Desulfovibrio vulgaris RCH1 12866381 YP_005702584.1 CDS Deval_1795 NC_017310.1 2008711 2009268 D KEGG: smd:Smed_1332 phiE125 gp8 hypothetical protein; hypothetical protein 2008711..2009268 Desulfovibrio vulgaris RCH1 12866382 YP_005702585.1 CDS Deval_1796 NC_017310.1 2009268 2009594 D TIGRFAM: phage head-tail adaptor; KEGG: aap:NT05HA_0498 phage head-tail adaptor, putative; phage head-tail adaptor 2009268..2009594 Desulfovibrio vulgaris RCH1 12866383 YP_005702586.1 CDS Deval_1797 NC_017310.1 2009587 2010084 D KEGG: nar:Saro_2417 beta-N-acetylhexosaminidase; hypothetical protein 2009587..2010084 Desulfovibrio vulgaris RCH1 12866384 YP_005702587.1 CDS Deval_1798 NC_017310.1 2010087 2010473 D PFAM: Protein of unknown function DUF3168; KEGG: cko:CKO_01026 D-cysteine desulfhydrase; hypothetical protein 2010087..2010473 Desulfovibrio vulgaris RCH1 12866385 YP_005702588.1 CDS Deval_1799 NC_017310.1 2010485 2011648 D KEGG: mno:Mnod_5059 hypothetical protein; hypothetical protein 2010485..2011648 Desulfovibrio vulgaris RCH1 12866386 YP_005702589.1 CDS Deval_1800 NC_017310.1 2011657 2012040 D KEGG: cbr:CBG07119 Hypothetical protein CBG07119; hypothetical protein 2011657..2012040 Desulfovibrio vulgaris RCH1 12866387 YP_005702590.1 CDS Deval_1801 NC_017310.1 2012202 2012384 D KEGG: ani:AN9354.2 hypothetical protein; hypothetical protein 2012202..2012384 Desulfovibrio vulgaris RCH1 12866388 YP_005702591.1 CDS Deval_1802 NC_017310.1 2012460 2012864 R PFAM: Uncharacterised protein family UPF0150; KEGG: dde:Dde_3760 hypothetical protein; hypothetical protein complement(2012460..2012864) Desulfovibrio vulgaris RCH1 12866389 YP_005702592.1 CDS Deval_1803 NC_017310.1 2012913 2013095 R PFAM: YcfA family protein; KEGG: YcfA family protein; hypothetical protein complement(2012913..2013095) Desulfovibrio vulgaris RCH1 12866390 YP_005702593.1 CDS Deval_1804 NC_017310.1 2013268 2016066 D TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein; phage tape measure protein 2013268..2016066 Desulfovibrio vulgaris RCH1 12866391 YP_005702594.1 CDS Deval_1805 NC_017310.1 2016069 2016419 D hypothetical protein 2016069..2016419 Desulfovibrio vulgaris RCH1 12866392 YP_005702595.1 CDS Deval_1806 NC_017310.1 2016423 2017328 D KEGG: protein of unknown function DUF58; hypothetical protein 2016423..2017328 Desulfovibrio vulgaris RCH1 12866393 YP_005702596.1 CDS Deval_1807 NC_017310.1 2017318 2017746 D KEGG: bvi:Bcep1808_3223 hypothetical protein; hypothetical protein 2017318..2017746 Desulfovibrio vulgaris RCH1 12866394 YP_005702597.1 CDS Deval_1808 NC_017310.1 2017733 2020480 D KEGG: bvi:Bcep1808_3222 hypothetical protein; hypothetical protein 2017733..2020480 Desulfovibrio vulgaris RCH1 12866395 YP_005702598.1 CDS Deval_1809 NC_017310.1 2020480 2021112 D KEGG: apb:SAR116_2344 hypothetical protein; hypothetical protein 2020480..2021112 Desulfovibrio vulgaris RCH1 12866396 YP_005702599.1 CDS Deval_1810 NC_017310.1 2021115 2021453 D KEGG: apb:SAR116_2345 hypothetical protein; hypothetical protein 2021115..2021453 Desulfovibrio vulgaris RCH1 12866397 YP_005702600.1 CDS Deval_1811 NC_017310.1 2021446 2021955 D KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 2021446..2021955 Desulfovibrio vulgaris RCH1 12866398 YP_005702601.1 CDS Deval_1812 NC_017310.1 2022588 2023088 D KEGG: dma:DMR_41750 putative nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease 2022588..2023088 Desulfovibrio vulgaris RCH1 12866399 YP_005702602.1 CDS Deval_1813 NC_017310.1 2023147 2023506 R KEGG: glo:Glov_1975 hypothetical protein; hypothetical protein complement(2023147..2023506) Desulfovibrio vulgaris RCH1 12866400 YP_005702603.1 CDS Deval_1814 NC_017310.1 2023547 2024554 R PFAM: Domain of unknown function DUF1848; KEGG: pdi:BDI_1313 hypothetical protein; hypothetical protein complement(2023547..2024554) Desulfovibrio vulgaris RCH1 12866401 YP_005702604.1 CDS Deval_1815 NC_017310.1 2024563 2025459 R KEGG: mac:MA0385 cobaltochelatase subunit CobN; hypothetical protein complement(2024563..2025459) Desulfovibrio vulgaris RCH1 12866402 YP_005702605.1 CDS Deval_1816 NC_017310.1 2025485 2026105 R KEGG: ecb:100064948 similar to T-complex protein 1; hypothetical protein complement(2025485..2026105) Desulfovibrio vulgaris RCH1 12866403 YP_005702606.1 CDS Deval_1817 NC_017310.1 2026977 2027654 R KEGG: dba:Dbac_2659 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU complement(2026977..2027654) Desulfovibrio vulgaris RCH1 12866404 YP_005702607.1 CDS Deval_1818 NC_017310.1 2028094 2028342 D KEGG: dde:Dde_2006 hypothetical protein; hypothetical protein 2028094..2028342 Desulfovibrio vulgaris RCH1 12866405 YP_005702608.1 CDS Deval_1819 NC_017310.1 2028664 2031111 R KEGG: dde:Dde_2007 ATP-dependent protease, putative; ATP-dependent protease complement(2028664..2031111) Desulfovibrio vulgaris RCH1 12866406 YP_005702609.1 CDS Deval_1820 NC_017310.1 2031126 2031554 R PFAM: heat shock protein Hsp20; KEGG: dde:Dde_2008 HSP20 family protein; heat shock protein Hsp20 complement(2031126..2031554) Desulfovibrio vulgaris RCH1 12866407 YP_005702610.1 CDS Deval_1821 NC_017310.1 2031627 2031911 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gur:Gura_0254 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2031627..2031911) Desulfovibrio vulgaris RCH1 12866408 YP_005702611.1 CDS Deval_1822 NC_017310.1 2032065 2033528 D PFAM: RNA binding S1 domain protein; KEGG: dds:Ddes_1207 RNA binding S1 domain protein; RNA binding S1 domain-containing protein 2032065..2033528 Desulfovibrio vulgaris RCH1 12866409 YP_005702612.1 CDS Deval_1823 NC_017310.1 2033689 2035137 D SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: dde:Dde_2013 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 2033689..2035137 Desulfovibrio vulgaris RCH1 12866410 YP_005702613.1 CDS Deval_1824 NC_017310.1 2035249 2036574 D TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: dde:Dde_2014 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU 2035249..2036574 Desulfovibrio vulgaris RCH1 12866411 YP_005702614.1 CDS Deval_1825 NC_017310.1 2036590 2037516 D TIGRFAM: acetylglutamate kinase; KEGG: dde:Dde_2015 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 2036590..2037516 Desulfovibrio vulgaris RCH1 12866412 YP_005702615.1 CDS Deval_1826 NC_017310.1 2037623 2038951 R KEGG: dde:Dde_2021 CgeB family protein; CgeB family protein complement(2037623..2038951) Desulfovibrio vulgaris RCH1 12866413 YP_005702616.1 CDS Deval_1827 NC_017310.1 2038995 2040230 R PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein; glycosyl transferase family protein complement(2038995..2040230) Desulfovibrio vulgaris RCH1 12866414 YP_005702617.1 CDS Deval_1828 NC_017310.1 2040353 2041030 D KEGG: dde:Dde_2023 precorrin-2 dehydrogenase; TIGRFAM: siroheme synthase; siroheme synthase 2040353..2041030 Desulfovibrio vulgaris RCH1 12866415 YP_005702618.1 CDS Deval_1829 NC_017310.1 2041017 2041847 D PFAM: cytochrome c assembly protein; KEGG: dde:Dde_2024 cytochrome c assembly protein, putative; cytochrome c assembly protein 2041017..2041847 Desulfovibrio vulgaris RCH1 12866416 YP_005702619.1 CDS Deval_1830 NC_017310.1 2041849 2043171 D KEGG: dde:Dde_2025 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 2041849..2043171 Desulfovibrio vulgaris RCH1 12866417 YP_005702620.1 CDS Deval_1831 NC_017310.1 2043189 2043524 D KEGG: dde:Dde_2026 hypothetical protein; hypothetical protein 2043189..2043524 Desulfovibrio vulgaris RCH1 12866418 YP_005702621.1 CDS Deval_1832 NC_017310.1 2043560 2044732 D KEGG: dde:Dde_2027 ketose-bisphosphate aldolase, class-II; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase 2043560..2044732 Desulfovibrio vulgaris RCH1 12866419 YP_005702622.1 CDS Deval_1833 NC_017310.1 2044995 2045741 D PFAM: Chemotaxis phosphatase CheZ; KEGG: dde:Dde_2148 chemotaxis protein CheZ, putative; Chemotaxis phosphatase CheZ 2044995..2045741 Desulfovibrio vulgaris RCH1 12866420 YP_005702623.1 CDS Deval_1834 NC_017310.1 2046042 2046971 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2151 thioredoxin reductase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2046042..2046971 Desulfovibrio vulgaris RCH1 12866421 YP_005702624.1 CDS Deval_1835 NC_017310.1 2047215 2048225 D PFAM: protein of unknown function DUF34; KEGG: dde:Dde_1729 hypothetical protein; hypothetical protein 2047215..2048225 Desulfovibrio vulgaris RCH1 12866423 YP_005702625.1 CDS Deval_1836 NC_017310.1 2048266 2049009 D PFAM: protein of unknown function DUF164; KEGG: dde:Dde_1728 hypothetical protein; hypothetical protein 2048266..2049009 Desulfovibrio vulgaris RCH1 12866424 YP_005702626.1 CDS Deval_1837 NC_017310.1 2049424 2050611 D KEGG: dde:Dde_1726 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2049424..2050611 Desulfovibrio vulgaris RCH1 12866426 YP_005702627.1 CDS Deval_1838 NC_017310.1 2050742 2052463 D PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2050742..2052463 Desulfovibrio vulgaris RCH1 12866427 YP_005702628.1 CDS Deval_1839 NC_017310.1 2052468 2052956 D KEGG: dsa:Desal_3347 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 2052468..2052956 Desulfovibrio vulgaris RCH1 12866428 YP_005702629.1 CDS Deval_1840 NC_017310.1 2052946 2054088 D KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase; PFAM: Stage II sporulation protein E; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; response regulator receiver modulated serine phosphatase 2052946..2054088 Desulfovibrio vulgaris RCH1 12866429 YP_005702630.1 CDS Deval_1841 NC_017310.1 2054085 2054528 D SMART: ATP-binding region ATPase domain protein; KEGG: dma:DMR_13680 hypothetical protein; ATP-binding region ATPase domain-containing protein 2054085..2054528 Desulfovibrio vulgaris RCH1 12866430 YP_005702631.1 CDS Deval_1842 NC_017310.1 2054486 2054830 D KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 2054486..2054830 Desulfovibrio vulgaris RCH1 12866431 YP_005702632.1 CDS Deval_1843 NC_017310.1 2054851 2055987 D PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein; hypothetical protein 2054851..2055987 Desulfovibrio vulgaris RCH1 12866432 YP_005702633.1 CDS Deval_1844 NC_017310.1 2055984 2057693 D KEGG: dde:Dde_1715 CgeB family protein; CgeB family protein 2055984..2057693 Desulfovibrio vulgaris RCH1 12866433 YP_005702634.1 CDS Deval_1845 NC_017310.1 2057690 2059093 D PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein; glycosyl transferase family protein 2057690..2059093 Desulfovibrio vulgaris RCH1 12866434 YP_005702635.1 CDS Deval_1846 NC_017310.1 2059236 2060831 D PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: dde:Dde_1713 hypothetical protein; flagellar hook-length control protein-like protein 2059236..2060831 Desulfovibrio vulgaris RCH1 12866435 YP_005702636.1 CDS Deval_1847 NC_017310.1 2060844 2061641 D PFAM: flagellar hook capping protein; KEGG: dde:Dde_1712 basal-body rod modification protein FlgD; flagellar hook capping protein 2060844..2061641 Desulfovibrio vulgaris RCH1 12866436 YP_005702637.1 CDS Deval_1848 NC_017310.1 2061699 2063393 D KEGG: dde:Dde_1711 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; flagellar hook-basal body protein 2061699..2063393 Desulfovibrio vulgaris RCH1 12866437 YP_005702638.1 CDS Deval_1849 NC_017310.1 2063861 2064235 R KEGG: dde:Dde_1710 hypothetical protein; hypothetical protein complement(2063861..2064235) Desulfovibrio vulgaris RCH1 12866438 YP_005702639.1 CDS Deval_1850 NC_017310.1 2064507 2065403 D PFAM: flagellin domain protein; KEGG: dde:Dde_1709 flagellin; flagellin domain-containing protein 2064507..2065403 Desulfovibrio vulgaris RCH1 12866439 YP_005702640.1 CDS Deval_1851 NC_017310.1 2065504 2066190 R SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: dde:Dde_1708 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III complement(2065504..2066190) Desulfovibrio vulgaris RCH1 12866440 YP_005702641.1 CDS Deval_1852 NC_017310.1 2066744 2067808 D PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein; DRTGG domain-containing protein 2066744..2067808 Desulfovibrio vulgaris RCH1 12866441 YP_005702642.1 CDS Deval_1853 NC_017310.1 2068305 2069489 D PFAM: major facilitator superfamily MFS_1; KEGG: lip:LI1013 major facilitator superfamily permease; major facilitator superfamily protein 2068305..2069489 Desulfovibrio vulgaris RCH1 12866442 YP_005702643.1 CDS Deval_1854 NC_017310.1 2069552 2069917 D KEGG: dde:Dde_1702 hypothetical protein; hypothetical protein 2069552..2069917 Desulfovibrio vulgaris RCH1 12866443 YP_005702644.1 CDS Deval_1855 NC_017310.1 2070153 2072747 D KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB; PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 2070153..2072747 Desulfovibrio vulgaris RCH1 12866444 YP_005702645.1 CDS Deval_1856 NC_017310.1 2072974 2075169 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1700 CheA signal transduction histidine kinase; sulfate transporter/antisigma-factor antagonist STAS complement(2072974..2075169) Desulfovibrio vulgaris RCH1 12866445 YP_005702646.1 CDS Deval_1857 NC_017310.1 2075363 2077969 D PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; peptidase M16 domain-containing protein 2075363..2077969 Desulfovibrio vulgaris RCH1 12866446 YP_005702647.1 CDS Deval_1858 NC_017310.1 2078383 2079483 D KEGG: dde:Dde_1698 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; GTP-binding protein YchF 2078383..2079483 Desulfovibrio vulgaris RCH1 12866447 YP_005702648.1 CDS Deval_1859 NC_017310.1 2079762 2081417 D KEGG: phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase, alpha-D-glucose phosphate-specific 2079762..2081417 Desulfovibrio vulgaris RCH1 12866448 YP_005702649.1 CDS Deval_1860 NC_017310.1 2081525 2081938 D KEGG: dde:Dde_1694 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2081525..2081938 Desulfovibrio vulgaris RCH1 12866449 YP_005702650.1 CDS Deval_1861 NC_017310.1 2082130 2082513 D KEGG: dde:Dde_1693 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; glycine cleavage system H protein 2082130..2082513 Desulfovibrio vulgaris RCH1 12866450 YP_005702651.1 CDS Deval_1862 NC_017310.1 2082528 2083859 D KEGG: dde:Dde_1692 glycine dehydrogenase subunit 1; PFAM: Glycine cleavage system P-protein-like; glycine dehydrogenase 2082528..2083859 Desulfovibrio vulgaris RCH1 12866451 YP_005702652.1 CDS Deval_1863 NC_017310.1 2083856 2085301 D KEGG: dde:Dde_1691 glycine dehydrogenase subunit 2; glycine dehydrogenase subunit 2 2083856..2085301 Desulfovibrio vulgaris RCH1 12866452 YP_005702653.1 CDS Deval_1864 NC_017310.1 2085291 2086661 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1690 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2085291..2086661 Desulfovibrio vulgaris RCH1 12866453 YP_005702654.1 CDS Deval_1865 NC_017310.1 2086803 2087837 D PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein; OmpA/MotB domain-containing protein 2086803..2087837 Desulfovibrio vulgaris RCH1 12866454 YP_005702655.1 CDS Deval_1866 NC_017310.1 2087902 2088363 D KEGG: dde:Dde_1688 hypothetical protein; hypothetical protein 2087902..2088363 Desulfovibrio vulgaris RCH1 12866455 YP_005702656.1 CDS Deval_1867 NC_017310.1 2088563 2088934 R PFAM: Hpt domain protein; KEGG: npu:Npun_R1685 multi-sensor hybrid histidine kinase; Hpt domain-containing protein complement(2088563..2088934) Desulfovibrio vulgaris RCH1 12866456 YP_005702657.1 CDS Deval_1868 NC_017310.1 2088995 2090374 R KEGG: dde:Dde_1685 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(2088995..2090374) Desulfovibrio vulgaris RCH1 12866457 YP_005702658.1 CDS Deval_1869 NC_017310.1 2090371 2092110 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(2090371..2092110) Desulfovibrio vulgaris RCH1 12866458 YP_005702659.1 CDS Deval_1870 NC_017310.1 2092557 2096141 R KEGG: dde:Dde_1682 hypothetical protein; hypothetical protein complement(2092557..2096141) Desulfovibrio vulgaris RCH1 12866459 YP_005702660.1 CDS Deval_1871 NC_017310.1 2096177 2099170 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: amr:AM1_4072 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2096177..2099170) Desulfovibrio vulgaris RCH1 12866460 YP_005702661.1 CDS Deval_1872 NC_017310.1 2099202 2100494 R KEGG: drt:Dret_1307 extracellular ligand-binding receptor; hypothetical protein complement(2099202..2100494) Desulfovibrio vulgaris RCH1 12866461 YP_005702662.1 CDS Deval_1873 NC_017310.1 2100608 2101588 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2100608..2101588 Desulfovibrio vulgaris RCH1 12866462 YP_005702663.1 CDS Deval_1874 NC_017310.1 2101910 2103199 R KEGG: dde:Dde_1680 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC complement(2101910..2103199) Desulfovibrio vulgaris RCH1 12866463 YP_005702664.1 CDS Deval_1875 NC_017310.1 2103550 2104545 D KEGG: dde:Dde_1679 hypothetical protein; hypothetical protein 2103550..2104545 Desulfovibrio vulgaris RCH1 12866464 YP_005702665.1 CDS Deval_1876 NC_017310.1 2104822 2105286 R KEGG: dde:Dde_1678 hypothetical protein; hypothetical protein complement(2104822..2105286) Desulfovibrio vulgaris RCH1 12866465 YP_005702666.1 CDS Deval_1877 NC_017310.1 2105304 2105627 R KEGG: dde:Dde_1677 hypothetical protein; hypothetical protein complement(2105304..2105627) Desulfovibrio vulgaris RCH1 12866466 YP_005702667.1 CDS Deval_1878 NC_017310.1 2105764 2107239 D KEGG: dde:Dde_1676 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2105764..2107239 Desulfovibrio vulgaris RCH1 12866467 YP_005702668.1 CDS Deval_1879 NC_017310.1 2107556 2108608 R TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: dde:Dde_1672 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase complement(2107556..2108608) Desulfovibrio vulgaris RCH1 12866468 YP_005702669.1 CDS Deval_1880 NC_017310.1 2108694 2109122 D KEGG: cqu:CpipJ_CPIJ000761 expanded; hypothetical protein 2108694..2109122 Desulfovibrio vulgaris RCH1 12866469 YP_005702670.1 CDS Deval_1881 NC_017310.1 2109085 2110212 D KEGG: dba:Dbac_0044 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2109085..2110212 Desulfovibrio vulgaris RCH1 12866470 YP_005702671.1 CDS Deval_1882 NC_017310.1 2110190 2110693 D PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dds:Ddes_1842 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 2110190..2110693 Desulfovibrio vulgaris RCH1 12866471 YP_005702672.1 CDS Deval_1883 NC_017310.1 2110698 2111693 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sdn:Sden_2565 DNA-binding transcriptional activator GcvA; LysR family transcriptional regulator complement(2110698..2111693) Desulfovibrio vulgaris RCH1 12866472 YP_005702673.1 CDS Deval_1884 NC_017310.1 2111846 2112811 D PFAM: Auxin Efflux Carrier; KEGG: dde:Dde_0880 hypothetical protein; auxin efflux carrier family protein 2111846..2112811 Desulfovibrio vulgaris RCH1 12866473 YP_005702674.1 CDS Deval_1885 NC_017310.1 2112977 2114914 R KEGG: dsa:Desal_0917 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer complement(2112977..2114914) Desulfovibrio vulgaris RCH1 12866474 YP_005702675.1 CDS Deval_1886 NC_017310.1 2114959 2115357 D KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2114959..2115357 Desulfovibrio vulgaris RCH1 12866475 YP_005702676.1 CDS Deval_1887 NC_017310.1 2115354 2116196 D PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit; integrase catalytic subunit 2115354..2116196 Desulfovibrio vulgaris RCH1 12866476 YP_005702677.1 CDS Deval_1888 NC_017310.1 2116159 2117001 R KEGG: dba:Dbac_1296 transcriptional regulator-like protein; transcriptional regulator-like protein complement(2116159..2117001) Desulfovibrio vulgaris RCH1 12866477 YP_005702678.1 CDS Deval_1889 NC_017310.1 2117482 2118195 D PFAM: ERF family protein; KEGG: lip:LI0182 putative recombination protein-phage associated; ERF family protein 2117482..2118195 Desulfovibrio vulgaris RCH1 12866478 YP_005702679.1 CDS Deval_1890 NC_017310.1 2118267 2119538 D KEGG: dde:Dde_3432 hypothetical protein; hypothetical protein 2118267..2119538 Desulfovibrio vulgaris RCH1 12866479 YP_005702680.1 CDS Deval_1891 NC_017310.1 2119541 2119906 D KEGG: lip:LI0184 hypothetical protein; hypothetical protein 2119541..2119906 Desulfovibrio vulgaris RCH1 12866480 YP_005702681.1 CDS Deval_1892 NC_017310.1 2119903 2120190 R KEGG: addiction module toxin, RelE/StbE family; manually curated; PFAM: plasmid stabilization system; plasmid stabilization system complement(2119903..2120190) Desulfovibrio vulgaris RCH1 12866481 YP_005702682.1 CDS Deval_1893 NC_017310.1 2120180 2120419 R KEGG: dze:Dd1591_2452 transcriptional regulator, CopG family; CopG family transcriptional regulator complement(2120180..2120419) Desulfovibrio vulgaris RCH1 12866482 YP_005702683.1 CDS Deval_1894 NC_017310.1 2120498 2121472 D KEGG: dde:Dde_3433 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase 2120498..2121472 Desulfovibrio vulgaris RCH1 12866483 YP_005702684.1 CDS Deval_1895 NC_017310.1 2121891 2122166 D KEGG: tps:THAPSDRAFT_11220 hypothetical protein; hypothetical protein 2121891..2122166 Desulfovibrio vulgaris RCH1 12866484 YP_005702685.1 CDS Deval_1896 NC_017310.1 2122176 2122463 D KEGG: tca:658043 similar to Aspartate aminotransferase, cytoplasmic (Transaminase A) (Glutamate oxaloacetate transaminase 1); hypothetical protein 2122176..2122463 Desulfovibrio vulgaris RCH1 12866485 YP_005702686.1 CDS Deval_1897 NC_017310.1 2122509 2123504 D KEGG: dde:Dde_2921 hypothetical protein; hypothetical protein 2122509..2123504 Desulfovibrio vulgaris RCH1 12866486 YP_005702687.1 CDS Deval_1898 NC_017310.1 2123566 2124312 D PFAM: filamentation induced by cAMP protein Fic; KEGG: dba:Dbac_1233 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2123566..2124312 Desulfovibrio vulgaris RCH1 12866487 YP_005702688.1 CDS Deval_1899 NC_017310.1 2124381 2125982 D KEGG: dde:Dde_2920 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; von Willebrand factor type A 2124381..2125982 Desulfovibrio vulgaris RCH1 12866488 YP_005702689.1 CDS Deval_1900 NC_017310.1 2126029 2126148 D hypothetical protein 2126029..2126148 Desulfovibrio vulgaris RCH1 12866489 YP_005702690.1 CDS Deval_1901 NC_017310.1 2126209 2126391 D hypothetical protein 2126209..2126391 Desulfovibrio vulgaris RCH1 12866490 YP_005702691.1 CDS Deval_1902 NC_017310.1 2126687 2129122 R SMART: AAA ATPase; KEGG: nhl:Nhal_1924 hypothetical protein; AAA ATPase complement(2126687..2129122) Desulfovibrio vulgaris RCH1 12866491 YP_005702692.1 CDS Deval_1903 NC_017310.1 2129389 2129691 R KEGG: sfu:Sfum_2425 hypothetical protein; hypothetical protein complement(2129389..2129691) Desulfovibrio vulgaris RCH1 12866492 YP_005702693.1 CDS Deval_1906 NC_017310.1 2131163 2132461 R KEGG: ter:Tery_0626 tetratricopeptide TPR_2; hypothetical protein complement(2131163..2132461) Desulfovibrio vulgaris RCH1 12866495 YP_005702694.1 CDS Deval_1907 NC_017310.1 2132861 2133583 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2132861..2133583 Desulfovibrio vulgaris RCH1 12866497 YP_005702695.1 CDS Deval_1908 NC_017310.1 2133813 2134493 D PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein; hypothetical protein 2133813..2134493 Desulfovibrio vulgaris RCH1 12866498 YP_005702696.1 CDS Deval_1909 NC_017310.1 2134663 2136654 R KEGG: dde:Dde_1594 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; methionyl-tRNA synthetase complement(2134663..2136654) Desulfovibrio vulgaris RCH1 12866499 YP_005702697.1 CDS Deval_1910 NC_017310.1 2136884 2138347 R PFAM: PSP1 domain protein; KEGG: dde:Dde_1593 hypothetical protein; PSP1 domain-containing protein complement(2136884..2138347) Desulfovibrio vulgaris RCH1 12866500 YP_005702698.1 CDS Deval_1911 NC_017310.1 2138496 2139116 D KEGG: dde:Dde_1591 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal dependent phosphohydrolase 2138496..2139116 Desulfovibrio vulgaris RCH1 12866501 YP_005702699.1 CDS Deval_1912 NC_017310.1 2139131 2140123 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1590 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2139131..2140123 Desulfovibrio vulgaris RCH1 12866502 YP_005702700.1 CDS Deval_1913 NC_017310.1 2140407 2141741 D PFAM: phosphofructokinase; KEGG: dde:Dde_1589 diphosphate--fructose-6-phosphate 1-phosphotransferase; phosphofructokinase 2140407..2141741 Desulfovibrio vulgaris RCH1 12866503 YP_005702701.1 CDS Deval_1914 NC_017310.1 2141756 2145214 D PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 2141756..2145214 Desulfovibrio vulgaris RCH1 12866504 YP_005702702.1 CDS Deval_1915 NC_017310.1 2145211 2148165 D KEGG: dde:Dde_1587 hypothetical protein; hypothetical protein 2145211..2148165 Desulfovibrio vulgaris RCH1 12866505 YP_005702703.1 CDS Deval_1916 NC_017310.1 2148277 2149398 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: dds:Ddes_0977 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase 2148277..2149398 Desulfovibrio vulgaris RCH1 12866506 YP_005702704.1 CDS Deval_1917 NC_017310.1 2149712 2151184 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1585 site-specific recombinase XerD-like; integrase family protein complement(2149712..2151184) Desulfovibrio vulgaris RCH1 12866507 YP_005702705.1 CDS Deval_1918 NC_017310.1 2151129 2152250 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase complement(2151129..2152250) Desulfovibrio vulgaris RCH1 12866508 YP_005702706.1 CDS Deval_1919 NC_017310.1 2152250 2153092 R PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 putative signal transduction protein; putative signal transduction protein complement(2152250..2153092) Desulfovibrio vulgaris RCH1 12866509 YP_005702707.1 CDS Deval_1920 NC_017310.1 2153146 2153478 R KEGG: dde:Dde_1582 hypothetical protein; hypothetical protein complement(2153146..2153478) Desulfovibrio vulgaris RCH1 12866510 YP_005702708.1 CDS Deval_1921 NC_017310.1 2153498 2155489 R KEGG: dds:Ddes_0966 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA complement(2153498..2155489) Desulfovibrio vulgaris RCH1 12866511 YP_005702709.1 CDS Deval_1922 NC_017310.1 2155498 2156271 R TIGRFAM: tol-pal system protein YbgF; KEGG: lip:LI0109 hypothetical protein; tol-pal system protein YbgF complement(2155498..2156271) Desulfovibrio vulgaris RCH1 12866512 YP_005702710.1 CDS Deval_1924 NC_017310.1 2157654 2160923 R KEGG: dds:Ddes_1383 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; CheA signal transduction histidine kinase complement(2157654..2160923) Desulfovibrio vulgaris RCH1 12866514 YP_005702711.1 CDS Deval_1925 NC_017310.1 2161019 2161387 R KEGG: dde:Dde_1576 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(2161019..2161387) Desulfovibrio vulgaris RCH1 12866515 YP_005702712.1 CDS Deval_1926 NC_017310.1 2161397 2162047 R KEGG: dde:Dde_1575 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein complement(2161397..2162047) Desulfovibrio vulgaris RCH1 12866516 YP_005702713.1 CDS Deval_1927 NC_017310.1 2162041 2162817 R KEGG: dde:Dde_1574 ParA family protein; ParA family protein complement(2162041..2162817) Desulfovibrio vulgaris RCH1 12866517 YP_005702714.1 CDS Deval_1928 NC_017310.1 2162868 2163743 R PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_1573 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR complement(2162868..2163743) Desulfovibrio vulgaris RCH1 12866518 YP_005702715.1 CDS Deval_1929 NC_017310.1 2163743 2165671 R PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: dde:Dde_1572 heat repeat-containing PBS lyase; PBS lyase HEAT domain-containing protein repeat-containing protein complement(2163743..2165671) Desulfovibrio vulgaris RCH1 12866519 YP_005702716.1 CDS Deval_1930 NC_017310.1 2165730 2166833 R PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_1571 response regulator receiver domain-containing protein; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase complement(2165730..2166833) Desulfovibrio vulgaris RCH1 12866520 YP_005702717.1 CDS Deval_1931 NC_017310.1 2167170 2169605 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: app:CAP2UW1_0158 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase complement(2167170..2169605) Desulfovibrio vulgaris RCH1 12866522 YP_005702718.1 CDS Deval_1932 NC_017310.1 2169890 2170027 D hypothetical protein 2169890..2170027 Desulfovibrio vulgaris RCH1 12866523 YP_005702719.1 CDS Deval_1933 NC_017310.1 2170097 2170435 D KEGG: dps:DP2299 hypothetical protein; hypothetical protein 2170097..2170435 Desulfovibrio vulgaris RCH1 12866524 YP_005702720.1 CDS Deval_1934 NC_017310.1 2171002 2171895 D PFAM: flagellin domain protein; KEGG: dde:Dde_1570 flagellin, putative; flagellin domain-containing protein 2171002..2171895 Desulfovibrio vulgaris RCH1 12866525 YP_005702721.1 CDS Deval_1935 NC_017310.1 2171978 2172094 R hypothetical protein complement(2171978..2172094) Desulfovibrio vulgaris RCH1 12866526 YP_005702722.1 CDS Deval_1936 NC_017310.1 2172094 2174247 R SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: dde:Dde_1569 metal dependent phosphohydrolase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein; (p)ppGpp synthetase I SpoT/RelA complement(2172094..2174247) Desulfovibrio vulgaris RCH1 12866527 YP_005702723.1 CDS Deval_1937 NC_017310.1 2174251 2175948 R PFAM: extracellular solute-binding protein family 5; KEGG: dma:DMR_35960 putative peptide ABC transporter substrate binding protein; family 5 extracellular solute-binding protein complement(2174251..2175948) Desulfovibrio vulgaris RCH1 12866528 YP_005702724.1 CDS Deval_1938 NC_017310.1 2176181 2179396 D KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SNF2-related protein 2176181..2179396 Desulfovibrio vulgaris RCH1 12866529 YP_005702725.1 CDS Deval_1939 NC_017310.1 2179651 2181093 R KEGG: cdf:CD3353 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; DeoR family transcriptional regulator complement(2179651..2181093) Desulfovibrio vulgaris RCH1 12866530 YP_005702726.1 CDS Deval_1940 NC_017310.1 2181224 2181901 D KEGG: cdl:CDR20291_3198 hypothetical protein; PFAM: B3/4 domain protein; SMART: B3/4 domain protein; B3/4 domain-containing protein 2181224..2181901 Desulfovibrio vulgaris RCH1 12866531 YP_005702727.1 CDS Deval_1941 NC_017310.1 2181898 2182818 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bha:BH0390 hypothetical protein; hypothetical protein 2181898..2182818 Desulfovibrio vulgaris RCH1 12866532 YP_005702728.1 CDS Deval_1942 NC_017310.1 2183089 2183925 D KEGG: dat:HRM2_21040 hypothetical protein; hypothetical protein 2183089..2183925 Desulfovibrio vulgaris RCH1 12866533 YP_005702729.1 CDS Deval_1943 NC_017310.1 2184060 2184740 R KEGG: dds:Ddes_0209 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2184060..2184740) Desulfovibrio vulgaris RCH1 12866534 YP_005702730.1 CDS Deval_1944 NC_017310.1 2185009 2185635 R KEGG: lip:LI0506 thiamine biosynthesis protein ThiF; TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; thiamine biosynthesis protein ThiF complement(2185009..2185635) Desulfovibrio vulgaris RCH1 12866535 YP_005702731.1 CDS Deval_1945 NC_017310.1 2185635 2186969 R TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; KEGG: dds:Ddes_2167 thiazole biosynthesis protein ThiH; SMART: biotin and thiamin synthesis associated; thiazole biosynthesis protein ThiH complement(2185635..2186969) Desulfovibrio vulgaris RCH1 12866536 YP_005702732.1 CDS Deval_1946 NC_017310.1 2186972 2187769 R PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase; thiazole biosynthesis family protein complement(2186972..2187769) Desulfovibrio vulgaris RCH1 12866537 YP_005702733.1 CDS Deval_1947 NC_017310.1 2187769 2187969 R KEGG: tro:trd_0402 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS complement(2187769..2187969) Desulfovibrio vulgaris RCH1 12866538 YP_005702734.1 CDS Deval_1948 NC_017310.1 2188857 2189528 D KEGG: dsa:Desal_2509 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; CarD family transcriptional regulator 2188857..2189528 Desulfovibrio vulgaris RCH1 12866539 YP_005702735.1 CDS Deval_1949 NC_017310.1 2189817 2191706 D TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: dds:Ddes_0382 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; carbon-monoxide dehydrogenase, catalytic subunit 2189817..2191706 Desulfovibrio vulgaris RCH1 12866540 YP_005702736.1 CDS Deval_1950 NC_017310.1 2191791 2192672 D KEGG: dde:Dde_3029 carbon monoxide dehydrogenase accessory protein CooC, putative; carbon monoxide dehydrogenase accessory protein CooC, putative 2191791..2192672 Desulfovibrio vulgaris RCH1 12866541 YP_005702737.1 CDS Deval_1951 NC_017310.1 2192813 2193229 R PFAM: UspA domain-containing protein; KEGG: dma:DMR_42220 putative universal stress protein; UspA domain-containing protein complement(2192813..2193229) Desulfovibrio vulgaris RCH1 12866542 YP_005702738.1 CDS Deval_1952 NC_017310.1 2193455 2198806 R PFAM: protein of unknown function DUF490; KEGG: mpo:Mpop_2889 protein of unknown function DUF490; hypothetical protein complement(2193455..2198806) Desulfovibrio vulgaris RCH1 12866543 YP_005702739.1 CDS Deval_1953 NC_017310.1 2198806 2201136 R PFAM: surface antigen (D15); KEGG: dds:Ddes_0465 surface antigen (D15); surface antigen (D15) complement(2198806..2201136) Desulfovibrio vulgaris RCH1 12866544 YP_005702740.1 CDS Deval_1954 NC_017310.1 2201411 2202274 R KEGG: dde:Dde_3201 iron-sulfur cluster-binding/ATPase domain-containing protein; iron-sulfur cluster-binding/ATPase domain-containing protein complement(2201411..2202274) Desulfovibrio vulgaris RCH1 12866545 YP_005702741.1 CDS Deval_1955 NC_017310.1 2202271 2203176 R KEGG: drt:Dret_0442 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase complement(2202271..2203176) Desulfovibrio vulgaris RCH1 12866546 YP_005702742.1 CDS Deval_1956 NC_017310.1 2203878 2205254 D TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dma:DMR_41220 fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 2203878..2205254 Desulfovibrio vulgaris RCH1 12866547 YP_005702743.1 CDS Deval_1957 NC_017310.1 2205612 2206022 D PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0622 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 2205612..2206022 Desulfovibrio vulgaris RCH1 12866548 YP_005702744.1 CDS Deval_1958 NC_017310.1 2206013 2206372 D PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0621 dinitrogenase iron-molybdenum cofactor biosynthesis protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 2206013..2206372 Desulfovibrio vulgaris RCH1 12866549 YP_005702745.1 CDS Deval_1959 NC_017310.1 2206369 2207832 D PFAM: ATPase-like, ParA/MinD; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0620 cobyrinic acid ac-diamide synthase; ParA/MinD-like ATPase 2206369..2207832 Desulfovibrio vulgaris RCH1 12866550 YP_005702746.1 CDS Deval_1960 NC_017310.1 2208181 2209818 R KEGG: dma:DMR_20020 L-lactate permease; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport complement(2208181..2209818) Desulfovibrio vulgaris RCH1 12866551 YP_005702747.1 CDS Deval_1961 NC_017310.1 2209975 2210877 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_2181 transcriptional regulatory protein; LysR family transcriptional regulator 2209975..2210877 Desulfovibrio vulgaris RCH1 12866552 YP_005702748.1 CDS Deval_1962 NC_017310.1 2211054 2211293 D manually curated; KEGG: slt:Slit_0012 multi-sensor signal transduction histidine kinase; hypothetical protein 2211054..2211293 Desulfovibrio vulgaris RCH1 12866553 YP_005702749.1 CDS Deval_1963 NC_017310.1 2211605 2212933 R PFAM: Xanthine/uracil/vitamin C permease; KEGG: chy:CHY_0697 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease complement(2211605..2212933) Desulfovibrio vulgaris RCH1 12866554 YP_005702750.1 CDS Deval_1964 NC_017310.1 2213568 2214956 D KEGG: dde:Dde_2355 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 2213568..2214956 Desulfovibrio vulgaris RCH1 12866555 YP_005702751.1 CDS Deval_1965 NC_017310.1 2215405 2215581 D PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative; Flp/Fap pilin component 2215405..2215581 Desulfovibrio vulgaris RCH1 12866556 YP_005702752.1 CDS Deval_1966 NC_017310.1 2215622 2215795 D PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative; Flp/Fap pilin component 2215622..2215795 Desulfovibrio vulgaris RCH1 12866557 YP_005702753.1 CDS Deval_1967 NC_017310.1 2216016 2216582 D PFAM: peptidase A24A prepilin type IV; KEGG: dde:Dde_2358 hypothetical protein; peptidase A24A prepilin type IV 2216016..2216582 Desulfovibrio vulgaris RCH1 12866558 YP_005702754.1 CDS Deval_1968 NC_017310.1 2216592 2217410 D KEGG: dde:Dde_2359 putative pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; Flp pilus assembly protein CpaB 2216592..2217410 Desulfovibrio vulgaris RCH1 12866559 YP_005702755.1 CDS Deval_1969 NC_017310.1 2217407 2218861 D PFAM: type II and III secretion system protein; transport-associated; KEGG: dde:Dde_2360 type II/III secretion system protein; type II and III secretion system protein 2217407..2218861 Desulfovibrio vulgaris RCH1 12866560 YP_005702756.1 CDS Deval_1970 NC_017310.1 2218871 2219275 D KEGG: dde:Dde_2361 hypothetical protein; hypothetical protein 2218871..2219275 Desulfovibrio vulgaris RCH1 12866561 YP_005702757.1 CDS Deval_1971 NC_017310.1 2219287 2220501 D KEGG: dde:Dde_2362 response regulator receiver domain-containing protein; response regulator receiver protein 2219287..2220501 Desulfovibrio vulgaris RCH1 12866562 YP_005702758.1 CDS Deval_1972 NC_017310.1 2220505 2222331 D PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein; type II secretion system protein E 2220505..2222331 Desulfovibrio vulgaris RCH1 12866563 YP_005702759.1 CDS Deval_1973 NC_017310.1 2222411 2223376 D PFAM: Type II secretion system F domain; KEGG: dde:Dde_2364 hypothetical protein; type II secretion system F domain-containing protein 2222411..2223376 Desulfovibrio vulgaris RCH1 12866564 YP_005702760.1 CDS Deval_1974 NC_017310.1 2223388 2224359 D PFAM: Type II secretion system F domain; KEGG: dde:Dde_2365 hypothetical protein; type II secretion system F domain-containing protein 2223388..2224359 Desulfovibrio vulgaris RCH1 12866565 YP_005702761.1 CDS Deval_1975 NC_017310.1 2224413 2225528 D KEGG: dde:Dde_2366 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 2224413..2225528 Desulfovibrio vulgaris RCH1 12866566 YP_005702762.1 CDS Deval_1976 NC_017310.1 2225717 2226106 D PFAM: TadE family protein; KEGG: dde:Dde_2367 hypothetical protein; TadE family protein 2225717..2226106 Desulfovibrio vulgaris RCH1 12866567 YP_005702763.1 CDS Deval_1977 NC_017310.1 2226057 2227379 D KEGG: dde:Dde_2368 von Willebrand factor, type A; PFAM: Protein of unknown function DUF2134, membrane; von Willebrand factor type A; SMART: von Willebrand factor type A; hypothetical protein 2226057..2227379 Desulfovibrio vulgaris RCH1 12866568 YP_005702764.1 CDS Deval_1978 NC_017310.1 2227395 2227889 D PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein; TadE family protein 2227395..2227889 Desulfovibrio vulgaris RCH1 12866569 YP_005702765.1 CDS Deval_1979 NC_017310.1 2228080 2230398 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: dde:Dde_2370 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; signal transduction histidine kinase, nitrogen specific, NtrB 2228080..2230398 Desulfovibrio vulgaris RCH1 12866570 YP_005702766.1 CDS Deval_1980 NC_017310.1 2230385 2231047 R KEGG: dma:DMR_15480 hypothetical protein; hypothetical protein complement(2230385..2231047) Desulfovibrio vulgaris RCH1 12866571 YP_005702767.1 CDS Deval_1981 NC_017310.1 2231350 2231823 D PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: dma:DMR_11960 hypothetical protein; nucleoside 2-deoxyribosyltransferase 2231350..2231823 Desulfovibrio vulgaris RCH1 12866572 YP_005702768.1 CDS Deval_1982 NC_017310.1 2232090 2232347 R KEGG: dsa:Desal_0415 hypothetical protein; hypothetical protein complement(2232090..2232347) Desulfovibrio vulgaris RCH1 12866573 YP_005702769.1 CDS Deval_1983 NC_017310.1 2232402 2234141 R PFAM: Uncharacterised protein family UPF0324; KEGG: dde:Dde_0876 hypothetical protein; hypothetical protein complement(2232402..2234141) Desulfovibrio vulgaris RCH1 12866574 YP_005702770.1 CDS Deval_1984 NC_017310.1 2234861 2235412 D KEGG: dba:Dbac_1599 hypothetical protein; hypothetical protein 2234861..2235412 Desulfovibrio vulgaris RCH1 12866575 YP_005702771.1 CDS Deval_1985 NC_017310.1 2235550 2236671 D PFAM: FxsA cytoplasmic membrane protein; KEGG: uma:UM02469.1 hypothetical protein; FxsA cytoplasmic membrane protein 2235550..2236671 Desulfovibrio vulgaris RCH1 12866576 YP_005702772.1 CDS Deval_1986 NC_017310.1 2236892 2238967 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-grasp domain protein; CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP-forming) alpha subunit / succinyl-CoA synthetase (ADP-forming) beta subunit; SMART: CoA-binding domain protein; succinyl-CoA synthetase subunit alpha complement(2236892..2238967) Desulfovibrio vulgaris RCH1 12866577 YP_005702773.1 CDS Deval_1987 NC_017310.1 2239058 2239711 R KEGG: dde:Dde_2335 hypothetical protein; hypothetical protein complement(2239058..2239711) Desulfovibrio vulgaris RCH1 12866578 YP_005702774.1 CDS Deval_1988 NC_017310.1 2239764 2241083 R PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein; histone deacetylase superfamily protein complement(2239764..2241083) Desulfovibrio vulgaris RCH1 12866579 YP_005702775.1 CDS Deval_1989 NC_017310.1 2241237 2241911 R TIGRFAM: thymidylate kinase; KEGG: dde:Dde_2338 thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase complement(2241237..2241911) Desulfovibrio vulgaris RCH1 12866580 YP_005702776.1 CDS Deval_1990 NC_017310.1 2241887 2242924 R TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_2339 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(2241887..2242924) Desulfovibrio vulgaris RCH1 12866581 YP_005702777.1 CDS Deval_1991 NC_017310.1 2242969 2243814 D KEGG: dde:Dde_2340 exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 2242969..2243814 Desulfovibrio vulgaris RCH1 12866582 YP_005702778.1 CDS Deval_1992 NC_017310.1 2244263 2245186 D TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 2244263..2245186 Desulfovibrio vulgaris RCH1 12866583 YP_005702779.1 CDS Deval_1993 NC_017310.1 2245210 2246211 D TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I 2245210..2246211 Desulfovibrio vulgaris RCH1 12866584 YP_005702780.1 CDS Deval_1994 NC_017310.1 2246536 2247186 R PFAM: chloramphenicol acetyltransferase; KEGG: dma:DMR_43300 putative chloramphenicol acetyltransferase; chloramphenicol acetyltransferase complement(2246536..2247186) Desulfovibrio vulgaris RCH1 12866585 YP_005702781.1 CDS Deval_1995 NC_017310.1 2247196 2247315 R hypothetical protein complement(2247196..2247315) Desulfovibrio vulgaris RCH1 12866586 YP_005702782.1 CDS Deval_1996 NC_017310.1 2247547 2249055 R KEGG: dsa:Desal_0783 serine dehydratase alpha chain; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine ammonia-lyase complement(2247547..2249055) Desulfovibrio vulgaris RCH1 12866587 YP_005702783.1 CDS Deval_1997 NC_017310.1 2249530 2250924 D PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: dma:DMR_39890 hypothetical protein; hypothetical protein 2249530..2250924 Desulfovibrio vulgaris RCH1 12866588 YP_005702784.1 CDS Deval_1998 NC_017310.1 2251039 2252778 R PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: dde:Dde_2344 hypothetical protein; fibronectin-binding A domain-containing protein complement(2251039..2252778) Desulfovibrio vulgaris RCH1 12866589 YP_005702785.1 CDS Deval_1999 NC_017310.1 2252798 2253160 R TIGRFAM: RNA polymerase-binding protein DksA; KEGG: dde:Dde_2345 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator complement(2252798..2253160) Desulfovibrio vulgaris RCH1 12866590 YP_005702786.1 CDS Deval_2000 NC_017310.1 2253607 2253738 D hypothetical protein 2253607..2253738 Desulfovibrio vulgaris RCH1 12866591 YP_005702787.1 CDS Deval_2001 NC_017310.1 2254349 2254708 R KEGG: rbi:RB2501_03715 molybdopterin oxidoreductase, iron-sulfur binding subunit; hypothetical protein complement(2254349..2254708) Desulfovibrio vulgaris RCH1 12866596 YP_005702788.1 CDS Deval_2002 NC_017310.1 2254718 2255734 R KEGG: bgl:bglu_4p0110 YadA C-terminal domain protein; hypothetical protein complement(2254718..2255734) Desulfovibrio vulgaris RCH1 12866597 YP_005702789.1 CDS Deval_2003 NC_017310.1 2255736 2259776 R KEGG: bra:BRADO3646 tail fiber protein; hypothetical protein complement(2255736..2259776) Desulfovibrio vulgaris RCH1 12866598 YP_005702790.1 CDS Deval_2004 NC_017310.1 2259766 2260191 R PFAM: NLP/P60 protein; KEGG: bra:BRADO3645 tail assembly protein homolog; NLP/P60 protein complement(2259766..2260191) Desulfovibrio vulgaris RCH1 12866599 YP_005702791.1 CDS Deval_2005 NC_017310.1 2260191 2260700 R PFAM: Domain of unknown function DUF1833; KEGG: bra:BRADO3644 hypothetical protein; hypothetical protein complement(2260191..2260700) Desulfovibrio vulgaris RCH1 12866600 YP_005702792.1 CDS Deval_2006 NC_017310.1 2260697 2261062 R KEGG: xau:Xaut_3718 hypothetical protein; hypothetical protein complement(2260697..2261062) Desulfovibrio vulgaris RCH1 12866601 YP_005702793.1 CDS Deval_2007 NC_017310.1 2261062 2263983 R KEGG: hth:HTH_0891 phage tail tape measure protein; hypothetical protein complement(2261062..2263983) Desulfovibrio vulgaris RCH1 12866602 YP_005702794.1 CDS Deval_2009 NC_017310.1 2264282 2264632 R KEGG: pfo:Pfl01_1886 heat shock protein HSP70; hypothetical protein complement(2264282..2264632) Desulfovibrio vulgaris RCH1 12866604 YP_005702795.1 CDS Deval_2010 NC_017310.1 2264641 2265585 R KEGG: rsq:Rsph17025_3706 hypothetical protein; hypothetical protein complement(2264641..2265585) Desulfovibrio vulgaris RCH1 12866605 YP_005702796.1 CDS Deval_2011 NC_017310.1 2265603 2266070 R KEGG: pmf:P9303_01621 glutathione peroxidase; hypothetical protein complement(2265603..2266070) Desulfovibrio vulgaris RCH1 12866606 YP_005702797.1 CDS Deval_2012 NC_017310.1 2266067 2266777 R KEGG: aav:Aave_3619 extracellular solute-binding protein; hypothetical protein complement(2266067..2266777) Desulfovibrio vulgaris RCH1 12866607 YP_005702798.1 CDS Deval_2013 NC_017310.1 2266777 2267127 R KEGG: bbr:BB2632 3-hydroxyisobutyrate dehydrogenase; hypothetical protein complement(2266777..2267127) Desulfovibrio vulgaris RCH1 12866608 YP_005702799.1 CDS Deval_2014 NC_017310.1 2267127 2267291 R KEGG: saq:Sare_4128 peptidase M16 domain-containing protein; peptidase M16 domain-containing protein complement(2267127..2267291) Desulfovibrio vulgaris RCH1 12866609 YP_005702800.1 CDS Deval_2015 NC_017310.1 2267284 2267694 R KEGG: cme:CMT185C probable MAP kinase kinase kinase (MAP3K); hypothetical protein complement(2267284..2267694) Desulfovibrio vulgaris RCH1 12866610 YP_005702801.1 CDS Deval_2016 NC_017310.1 2267691 2267840 R KEGG: dsa:Desal_2965 hypothetical protein; hypothetical protein complement(2267691..2267840) Desulfovibrio vulgaris RCH1 12866611 YP_005702802.1 CDS Deval_2017 NC_017310.1 2267837 2268352 R PFAM: Lytic transglycosylase catalytic; KEGG: dma:DMR_25140 hypothetical protein; lytic transglycosylase complement(2267837..2268352) Desulfovibrio vulgaris RCH1 12866612 YP_005702803.1 CDS Deval_2018 NC_017310.1 2268360 2268815 R KEGG: dma:DMR_25100 hypothetical membrane protein; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; toxin secretion/phage lysis holin complement(2268360..2268815) Desulfovibrio vulgaris RCH1 12866613 YP_005702804.1 CDS Deval_2019 NC_017310.1 2268888 2269097 R KEGG: SH3 type 3 domain protein; hypothetical protein complement(2268888..2269097) Desulfovibrio vulgaris RCH1 12866614 YP_005702805.1 CDS Deval_2020 NC_017310.1 2269100 2270125 R KEGG: lhk:LHK_01651 putative capsid protein of prophage; hypothetical protein complement(2269100..2270125) Desulfovibrio vulgaris RCH1 12866615 YP_005702806.1 CDS Deval_2021 NC_017310.1 2270136 2270504 R KEGG: xal:XALc_0211 hypothetical phage-related protein; hypothetical protein complement(2270136..2270504) Desulfovibrio vulgaris RCH1 12866616 YP_005702807.1 CDS Deval_2022 NC_017310.1 2270508 2271785 R PFAM: peptidase S49; KEGG: rsh:Rsph17029_3360 peptidase S49; peptidase S49 complement(2270508..2271785) Desulfovibrio vulgaris RCH1 12866617 YP_005702808.1 CDS Deval_2023 NC_017310.1 2271745 2273298 R KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family complement(2271745..2273298) Desulfovibrio vulgaris RCH1 12866618 YP_005702809.1 CDS Deval_2024 NC_017310.1 2273298 2273519 R KEGG: str:Sterm_2513 hypothetical protein; hypothetical protein complement(2273298..2273519) Desulfovibrio vulgaris RCH1 12866619 YP_005702810.1 CDS Deval_2025 NC_017310.1 2273751 2274428 R KEGG: bcu:BCAH820_B0246 hypothetical protein; hypothetical protein complement(2273751..2274428) Desulfovibrio vulgaris RCH1 12866620 YP_005702811.1 CDS Deval_2026 NC_017310.1 2274482 2279269 R KEGG: bgl:bglu_1g24100 adenine specific DNA methyltransferase, putative; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; type III restriction protein res subunit complement(2274482..2279269) Desulfovibrio vulgaris RCH1 12866621 YP_005702812.1 CDS Deval_2028 NC_017310.1 2279875 2281248 R KEGG: pin:Ping_3110 hypothetical protein; hypothetical protein complement(2279875..2281248) Desulfovibrio vulgaris RCH1 12866623 YP_005702813.1 CDS Deval_2029 NC_017310.1 2281514 2282356 R PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit; integrase catalytic subunit complement(2281514..2282356) Desulfovibrio vulgaris RCH1 12866624 YP_005702814.1 CDS Deval_2031 NC_017310.1 2283138 2284016 D KEGG: mmw:Mmwyl1_2510 Rha family phage regulatory protein; TIGRFAM: phage regulatory protein, Rha family; PFAM: Phage regulatory protein, Rha-like; phage regulatory protein, Rha family 2283138..2284016 Desulfovibrio vulgaris RCH1 12866626 YP_005702815.1 CDS Deval_2032 NC_017310.1 2284406 2285137 D KEGG: bay:RBAM_006060 YdzE; hypothetical protein 2284406..2285137 Desulfovibrio vulgaris RCH1 12866627 YP_005702816.1 CDS Deval_2033 NC_017310.1 2285172 2285390 R KEGG: cai:Caci_8339 excision promoter, Xis; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory; excisionase family DNA binding domain-containing protein complement(2285172..2285390) Desulfovibrio vulgaris RCH1 12866628 YP_005702817.1 CDS Deval_2034 NC_017310.1 2285394 2287373 R PFAM: terminase GpA; KEGG: dsa:Desal_2143 terminase GpA; terminase GpA complement(2285394..2287373) Desulfovibrio vulgaris RCH1 12866629 YP_005702818.1 CDS Deval_2035 NC_017310.1 2287363 2288376 R KEGG: dsa:Desal_2144 hypothetical protein; hypothetical protein complement(2287363..2288376) Desulfovibrio vulgaris RCH1 12866630 YP_005702819.1 CDS Deval_2036 NC_017310.1 2288805 2289335 R KEGG: ace:Acel_0145 Rieske (2Fe-2S) domain-containing protein; hypothetical protein complement(2288805..2289335) Desulfovibrio vulgaris RCH1 12866631 YP_005702820.1 CDS Deval_2037 NC_017310.1 2289752 2292244 R KEGG: dsa:Desal_2146 phage/plasmid primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4 ; TOPRIM domain-containing protein; phage/plasmid primase, P4 family complement(2289752..2292244) Desulfovibrio vulgaris RCH1 12866632 YP_005702821.1 CDS Deval_2038 NC_017310.1 2292325 2292765 R KEGG: dde:Dde_1017 hypothetical protein; hypothetical protein complement(2292325..2292765) Desulfovibrio vulgaris RCH1 12866633 YP_005702822.1 CDS Deval_2039 NC_017310.1 2293111 2293404 D KEGG: npu:Npun_R3728 SpoIID/LytB domain-containing protein; hypothetical protein 2293111..2293404 Desulfovibrio vulgaris RCH1 12866634 YP_005702823.1 CDS Deval_2040 NC_017310.1 2293343 2293555 R KEGG: scl:sce6804 hypothetical protein; hypothetical protein complement(2293343..2293555) Desulfovibrio vulgaris RCH1 12866635 YP_005702824.1 CDS Deval_2041 NC_017310.1 2293870 2293974 D hypothetical protein 2293870..2293974 Desulfovibrio vulgaris RCH1 12866636 YP_005702825.1 CDS Deval_2042 NC_017310.1 2293967 2294122 D KEGG: tfu:Tfu_0403 hypothetical protein; hypothetical protein 2293967..2294122 Desulfovibrio vulgaris RCH1 12866637 YP_005702826.1 CDS Deval_2043 NC_017310.1 2294129 2294227 D hypothetical protein 2294129..2294227 Desulfovibrio vulgaris RCH1 12866638 YP_005702827.1 CDS Deval_2044 NC_017310.1 2294224 2294703 D KEGG: lbz:LbrM13_V2.1230 hypothetical protein; hypothetical protein 2294224..2294703 Desulfovibrio vulgaris RCH1 12866639 YP_005702828.1 CDS Deval_2045 NC_017310.1 2294750 2295439 D KEGG: dma:DMR_14730 hypothetical protein; hypothetical protein 2294750..2295439 Desulfovibrio vulgaris RCH1 12866640 YP_005702829.1 CDS Deval_2046 NC_017310.1 2295432 2295689 D KEGG: lma:LmjF23.0350 hypothetical protein; hypothetical protein 2295432..2295689 Desulfovibrio vulgaris RCH1 12866641 YP_005702830.1 CDS Deval_2047 NC_017310.1 2295997 2296284 D KEGG: oca:OCAR_7446 phage transcriptional regulator, AlpA; hypothetical protein 2295997..2296284 Desulfovibrio vulgaris RCH1 12866642 YP_005702831.1 CDS Deval_2048 NC_017310.1 2296285 2297364 R PFAM: integrase family protein; KEGG: dol:Dole_2954 integrase family protein; integrase family protein complement(2296285..2297364) Desulfovibrio vulgaris RCH1 12866643 YP_005702832.1 CDS Deval_2049 NC_017310.1 2297739 2297936 R KEGG: dma:DMR_03370 hypothetical protein; hypothetical protein complement(2297739..2297936) Desulfovibrio vulgaris RCH1 12866644 YP_005702833.1 CDS Deval_2050 NC_017310.1 2298335 2298715 D KEGG: ank:AnaeK_4404 hypothetical protein; hypothetical protein 2298335..2298715 Desulfovibrio vulgaris RCH1 12866645 YP_005702834.1 CDS Deval_2052 NC_017310.1 2299523 2300680 D PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_0050 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2299523..2300680 Desulfovibrio vulgaris RCH1 12866647 YP_005702835.1 CDS Deval_2053 NC_017310.1 2300991 2302508 R KEGG: dal:Dalk_0906 lytic transglycosylase catalytic; PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein complement(2300991..2302508) Desulfovibrio vulgaris RCH1 12866648 YP_005702836.1 CDS Deval_2054 NC_017310.1 2302833 2303207 D KEGG: dde:Dde_0809 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2302833..2303207 Desulfovibrio vulgaris RCH1 12866649 YP_005702837.1 CDS Deval_2055 NC_017310.1 2303317 2304705 D KEGG: cko:CKO_02849 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; tryptophanase 2303317..2304705 Desulfovibrio vulgaris RCH1 12866650 YP_005702838.1 CDS Deval_2056 NC_017310.1 2304876 2306153 D KEGG: yen:YE0649 tryptophan permease; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease; aromatic amino acid transporter 2304876..2306153 Desulfovibrio vulgaris RCH1 12866651 YP_005702839.1 CDS Deval_2057 NC_017310.1 2306459 2307130 R PFAM: YheO-like domain-containing protein; KEGG: dde:Dde_0810 hypothetical protein; YheO-like domain-containing protein complement(2306459..2307130) Desulfovibrio vulgaris RCH1 12866652 YP_005702840.1 CDS Deval_2058 NC_017310.1 2307842 2308564 D PFAM: methyltransferase small; KEGG: dds:Ddes_1002 methyltransferase small; methyltransferase small 2307842..2308564 Desulfovibrio vulgaris RCH1 12866654 YP_005702841.1 CDS Deval_2059 NC_017310.1 2308561 2310288 D PFAM: protein of unknown function DUF181; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dds:Ddes_1001 protein of unknown function DUF181; hypothetical protein 2308561..2310288 Desulfovibrio vulgaris RCH1 12866655 YP_005702842.1 CDS Deval_2060 NC_017310.1 2310435 2313053 R KEGG: dde:Dde_2351 hypothetical protein; hypothetical protein complement(2310435..2313053) Desulfovibrio vulgaris RCH1 12866656 YP_005702843.1 CDS Deval_2061 NC_017310.1 2313084 2313446 D KEGG: dde:Dde_2352 hypothetical protein; hypothetical protein 2313084..2313446 Desulfovibrio vulgaris RCH1 12866657 YP_005702844.1 CDS Deval_2062 NC_017310.1 2313791 2314492 D PFAM: nuclease (SNase domain-containing protein); KEGG: dde:Dde_2354 nuclease (SNase-like); nuclease 2313791..2314492 Desulfovibrio vulgaris RCH1 12866658 YP_005702845.1 CDS Deval_2063 NC_017310.1 2314897 2315166 D KEGG: drt:Dret_1753 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 2314897..2315166 Desulfovibrio vulgaris RCH1 12866659 YP_005702846.1 CDS Deval_2064 NC_017310.1 2315246 2315509 D KEGG: dsa:Desal_2394 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor IF-1 2315246..2315509 Desulfovibrio vulgaris RCH1 12866660 YP_005702847.1 CDS Deval_2065 NC_017310.1 2316044 2316550 R PFAM: GCN5-related N-acetyltransferase; KEGG: cpc:Cpar_2032 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2316044..2316550) Desulfovibrio vulgaris RCH1 12866661 YP_005702848.1 CDS Deval_2066 NC_017310.1 2316622 2317668 R PFAM: GTPase EngC; KEGG: dba:Dbac_0600 GTPase EngC; GTPase EngC complement(2316622..2317668) Desulfovibrio vulgaris RCH1 12866662 YP_005702849.1 CDS Deval_2067 NC_017310.1 2318043 2318312 D KEGG: cdf:CD3324 hypothetical protein; hypothetical protein 2318043..2318312 Desulfovibrio vulgaris RCH1 12866663 YP_005702850.1 CDS Deval_2068 NC_017310.1 2318503 2319033 R KEGG: dds:Ddes_0455 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein complement(2318503..2319033) Desulfovibrio vulgaris RCH1 12866664 YP_005702851.1 CDS Deval_2069 NC_017310.1 2319073 2319417 R KEGG: dds:Ddes_0456 hypothetical protein; hypothetical protein complement(2319073..2319417) Desulfovibrio vulgaris RCH1 12866665 YP_005702852.1 CDS Deval_2070 NC_017310.1 2319420 2320070 R KEGG: dde:Dde_1543 hypothetical protein; hypothetical protein complement(2319420..2320070) Desulfovibrio vulgaris RCH1 12866666 YP_005702853.1 CDS Deval_2071 NC_017310.1 2320089 2322344 R KEGG: dde:Dde_1542 acetyl-CoA carboxylase; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; Acetyl-CoA carboxylase complement(2320089..2322344) Desulfovibrio vulgaris RCH1 12866667 YP_005702854.1 CDS Deval_2072 NC_017310.1 2322418 2323833 R KEGG: dde:Dde_1541 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; pyruvate carboxylase complement(2322418..2323833) Desulfovibrio vulgaris RCH1 12866668 YP_005702855.1 CDS Deval_2073 NC_017310.1 2323814 2324257 R PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1540 hypothetical protein; type IV pilus assembly PilZ complement(2323814..2324257) Desulfovibrio vulgaris RCH1 12866669 YP_005702856.1 CDS Deval_2074 NC_017310.1 2324262 2324996 R PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein, putative; OmpA/MotB domain-containing protein complement(2324262..2324996) Desulfovibrio vulgaris RCH1 12866670 YP_005702857.1 CDS Deval_2075 NC_017310.1 2324980 2325741 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel complement(2324980..2325741) Desulfovibrio vulgaris RCH1 12866671 YP_005702858.1 CDS Deval_2076 NC_017310.1 2325857 2326681 D KEGG: dde:Dde_1537 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; purine nucleoside phosphorylase I 2325857..2326681 Desulfovibrio vulgaris RCH1 12866672 YP_005702859.1 CDS Deval_2077 NC_017310.1 2326777 2328726 D KEGG: lip:LI0145 GTP-binding protein LepA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein TypA 2326777..2328726 Desulfovibrio vulgaris RCH1 12866673 YP_005702860.1 CDS Deval_2078 NC_017310.1 2329162 2329530 D KEGG: dde:Dde_1532 hypothetical protein; hypothetical protein 2329162..2329530 Desulfovibrio vulgaris RCH1 12866674 YP_005702861.1 CDS Deval_2079 NC_017310.1 2329795 2330772 R PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1531 hypothetical protein; alpha/beta hydrolase fold protein complement(2329795..2330772) Desulfovibrio vulgaris RCH1 12866675 YP_005702862.1 CDS Deval_2080 NC_017310.1 2330957 2331097 D hypothetical protein 2330957..2331097 Desulfovibrio vulgaris RCH1 12866676 YP_005702863.1 CDS Deval_2081 NC_017310.1 2331117 2332286 D PFAM: HI0933 family protein; KEGG: dde:Dde_1530 hypothetical protein; hypothetical protein 2331117..2332286 Desulfovibrio vulgaris RCH1 12866677 YP_005702864.1 CDS Deval_2082 NC_017310.1 2332395 2332718 D Contains selenocysteine; manually curated; manually curated; KEGG: dma:DMR_38750 hypothetical protein; hypothetical protein 2332395..2332718 Desulfovibrio vulgaris RCH1 12866678 YP_005702865.1 CDS Deval_2083 NC_017310.1 2332777 2333739 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: dde:Dde_1529 adenosylcobinamide-phosphate synthase; cobalamin biosynthesis protein CbiB complement(2332777..2333739) Desulfovibrio vulgaris RCH1 12866679 YP_005702866.1 CDS Deval_2084 NC_017310.1 2333736 2334212 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1528 RNA methyltransferase; tRNA/rRNA methyltransferase SpoU complement(2333736..2334212) Desulfovibrio vulgaris RCH1 12866680 YP_005702867.1 CDS Deval_2085 NC_017310.1 2334458 2335903 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: cpc:Cpar_1998 glycoside hydrolase family 3 domain protein; glycoside hydrolase family protein complement(2334458..2335903) Desulfovibrio vulgaris RCH1 12866681 YP_005702868.1 CDS Deval_2086 NC_017310.1 2335903 2337555 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein; hydantoinase/oxoprolinase complement(2335903..2337555) Desulfovibrio vulgaris RCH1 12866682 YP_005702869.1 CDS Deval_2087 NC_017310.1 2337557 2338843 R TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: dde:Dde_2283 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(2337557..2338843) Desulfovibrio vulgaris RCH1 12866683 YP_005702870.1 CDS Deval_2088 NC_017310.1 2339048 2339995 R KEGG: dde:Dde_2284 asparaginase; PFAM: peptidase T2 asparaginase 2; asparaginase complement(2339048..2339995) Desulfovibrio vulgaris RCH1 12866684 YP_005702871.1 CDS Deval_2089 NC_017310.1 2340281 2342203 R TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: dde:Dde_2285 glycogen branching enzyme; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein complement(2340281..2342203) Desulfovibrio vulgaris RCH1 12866685 YP_005702872.1 CDS Deval_2090 NC_017310.1 2342200 2343669 R KEGG: dde:Dde_2286 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1; glycogen/starch synthase complement(2342200..2343669) Desulfovibrio vulgaris RCH1 12866686 YP_005702873.1 CDS Deval_2091 NC_017310.1 2343698 2344159 R PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein; NUDIX hydrolase complement(2343698..2344159) Desulfovibrio vulgaris RCH1 12866687 YP_005702874.1 CDS Deval_2092 NC_017310.1 2344908 2345144 R KEGG: dde:Dde_2315 hypothetical protein; hypothetical protein complement(2344908..2345144) Desulfovibrio vulgaris RCH1 12866688 YP_005702875.1 CDS Deval_2093 NC_017310.1 2345234 2347405 D KEGG: dde:Dde_2316 RNA-binding domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; Tex-like protein 2345234..2347405 Desulfovibrio vulgaris RCH1 12866689 YP_005702876.1 CDS Deval_2094 NC_017310.1 2347578 2348192 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; KEGG: cvi:CV_3739 peroxidase; alkyl hydroperoxide reductase complement(2347578..2348192) Desulfovibrio vulgaris RCH1 12866690 YP_005702877.1 CDS Deval_2095 NC_017310.1 2348473 2350128 R PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2317 AMP-binding protein; AMP-dependent synthetase and ligase complement(2348473..2350128) Desulfovibrio vulgaris RCH1 12866691 YP_005702878.1 CDS Deval_2096 NC_017310.1 2350461 2351021 R KEGG: dde:Dde_2318 transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; cupin complement(2350461..2351021) Desulfovibrio vulgaris RCH1 12866692 YP_005702879.1 CDS Deval_2097 NC_017310.1 2351238 2352752 R TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: dde:Dde_2320 DnaA family protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA complement(2351238..2352752) Desulfovibrio vulgaris RCH1 12866693 YP_005702880.1 CDS Deval_2098 NC_017310.1 2353033 2353770 R TIGRFAM: thymidylate synthase, flavin-dependent; KEGG: dde:Dde_2321 FAD-dependent thymidylate synthase; PFAM: thymidylate synthase complementing protein ThyX; thymidylate synthase, flavin-dependent complement(2353033..2353770) Desulfovibrio vulgaris RCH1 12866694 YP_005702881.1 CDS Deval_2099 NC_017310.1 2353788 2354750 R TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: dde:Dde_2322 Holliday junction DNA helicase RuvB; SMART: AAA ATPase; Holliday junction DNA helicase RuvB complement(2353788..2354750) Desulfovibrio vulgaris RCH1 12866695 YP_005702882.1 CDS Deval_2100 NC_017310.1 2354751 2355359 R KEGG: dde:Dde_2323 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; Holliday junction DNA helicase RuvA complement(2354751..2355359) Desulfovibrio vulgaris RCH1 12866696 YP_005702883.1 CDS Deval_2101 NC_017310.1 2355733 2356233 R TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: dde:Dde_2324 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC complement(2355733..2356233) Desulfovibrio vulgaris RCH1 12866697 YP_005702884.1 CDS Deval_2102 NC_017310.1 2356308 2357051 R PFAM: protein of unknown function DUF28; KEGG: dde:Dde_2325 hypothetical protein; hypothetical protein complement(2356308..2357051) Desulfovibrio vulgaris RCH1 12866698 YP_005702885.1 CDS Deval_2103 NC_017310.1 2357105 2357719 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dde:Dde_2326 ribosomal RNA large subunit methyltransferase J; ribosomal RNA methyltransferase RrmJ/FtsJ complement(2357105..2357719) Desulfovibrio vulgaris RCH1 12866699 YP_005702886.1 CDS Deval_2104 NC_017310.1 2357775 2359589 D KEGG: dde:Dde_2327 hypothetical protein; hypothetical protein 2357775..2359589 Desulfovibrio vulgaris RCH1 12866700 YP_005702887.1 CDS Deval_2105 NC_017310.1 2360217 2362154 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: ccv:CCV52592_1393 putative high-molecular-weight surface-exposed protein; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein complement(2360217..2362154) Desulfovibrio vulgaris RCH1 12866702 YP_005702888.1 CDS Deval_2106 NC_017310.1 2362651 2362944 R KEGG: dsa:Desal_3532 hypothetical protein; hypothetical protein complement(2362651..2362944) Desulfovibrio vulgaris RCH1 12866703 YP_005702889.1 CDS Deval_2107 NC_017310.1 2363246 2363398 R KEGG: dde:Dde_0689 hypothetical protein; hypothetical protein complement(2363246..2363398) Desulfovibrio vulgaris RCH1 12866704 YP_005702890.1 CDS Deval_2108 NC_017310.1 2363426 2363539 R KEGG: dsa:Desal_3531 hypothetical protein; hypothetical protein complement(2363426..2363539) Desulfovibrio vulgaris RCH1 12866705 YP_005702891.1 CDS Deval_2109 NC_017310.1 2363560 2364453 R TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: dsa:Desal_3529 glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family complement(2363560..2364453) Desulfovibrio vulgaris RCH1 12866706 YP_005702892.1 CDS Deval_2110 NC_017310.1 2364565 2367018 R PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dsa:Desal_3528 formate C-acetyltransferase; pyruvate formate-lyase PFL complement(2364565..2367018) Desulfovibrio vulgaris RCH1 12866707 YP_005702893.1 CDS Deval_2111 NC_017310.1 2367428 2368966 D KEGG: dsa:Desal_3527 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 2367428..2368966 Desulfovibrio vulgaris RCH1 12866708 YP_005702894.1 CDS Deval_2112 NC_017310.1 2369048 2369794 R PFAM: protein of unknown function DUF81; KEGG: dsa:Desal_3526 protein of unknown function DUF81; hypothetical protein complement(2369048..2369794) Desulfovibrio vulgaris RCH1 12866709 YP_005702895.1 CDS Deval_2113 NC_017310.1 2369775 2370386 R KEGG: dsa:Desal_3525 hypothetical protein; hypothetical protein complement(2369775..2370386) Desulfovibrio vulgaris RCH1 12866710 YP_005702896.1 CDS Deval_2114 NC_017310.1 2370450 2371301 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bpa:BPP1098 hypothetical protein; hypothetical protein complement(2370450..2371301) Desulfovibrio vulgaris RCH1 12866711 YP_005702897.1 CDS Deval_2115 NC_017310.1 2371790 2373298 D PFAM: amino acid permease-associated region; KEGG: dsa:Desal_3524 amino acid permease-associated region; amino acid permease 2371790..2373298 Desulfovibrio vulgaris RCH1 12866712 YP_005702898.1 CDS Deval_2116 NC_017310.1 2373454 2375682 R KEGG: dma:DMR_09210 putative two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor hybrid histidine kinase complement(2373454..2375682) Desulfovibrio vulgaris RCH1 12866713 YP_005702899.1 CDS Deval_2117 NC_017310.1 2375925 2377475 D KEGG: dsa:Desal_0583 hypothetical protein; hypothetical protein 2375925..2377475 Desulfovibrio vulgaris RCH1 12866714 YP_005702900.1 CDS Deval_2118 NC_017310.1 2377812 2378324 D KEGG: dde:Dde_1072 hypothetical protein; hypothetical protein 2377812..2378324 Desulfovibrio vulgaris RCH1 12866715 YP_005702901.1 CDS Deval_2119 NC_017310.1 2378747 2380258 R KEGG: dde:Dde_1074 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport complement(2378747..2380258) Desulfovibrio vulgaris RCH1 12866716 YP_005702902.1 CDS Deval_2120 NC_017310.1 2380669 2384571 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dds:Ddes_1880 NADH dehydrogenase (quinone); NADH/ubiquinone/plastoquinone 2380669..2384571 Desulfovibrio vulgaris RCH1 12866717 YP_005702903.1 CDS Deval_2121 NC_017310.1 2384575 2385540 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dds:Ddes_1881 respiratory-chain NADH dehydrogenase subunit 1; respiratory-chain NADH dehydrogenase subunit 1 2384575..2385540 Desulfovibrio vulgaris RCH1 12866718 YP_005702904.1 CDS Deval_2122 NC_017310.1 2385553 2385987 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dds:Ddes_1882 NADH ubiquinone oxidoreductase 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2385553..2385987 Desulfovibrio vulgaris RCH1 12866719 YP_005702905.1 CDS Deval_2123 NC_017310.1 2385989 2386624 D KEGG: dds:Ddes_1883 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2385989..2386624 Desulfovibrio vulgaris RCH1 12866720 YP_005702906.1 CDS Deval_2124 NC_017310.1 2386621 2387166 D PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dds:Ddes_1884 NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit 2386621..2387166 Desulfovibrio vulgaris RCH1 12866721 YP_005702907.1 CDS Deval_2125 NC_017310.1 2387163 2388263 D KEGG: chy:CHY_1827 carbon monoxide-induced hydrogenase, large subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (quinone) 2387163..2388263 Desulfovibrio vulgaris RCH1 12866722 YP_005702908.1 CDS Deval_2126 NC_017310.1 2388272 2388634 D KEGG: gbm:Gbem_0070 hydrogenase nickel insertion protein HypA; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; hydrogenase nickel incorporation protein HypA 2388272..2388634 Desulfovibrio vulgaris RCH1 12866723 YP_005702909.1 CDS Deval_2127 NC_017310.1 2388631 2389152 D KEGG: dds:Ddes_1887 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2388631..2389152 Desulfovibrio vulgaris RCH1 12866724 YP_005702910.1 CDS Deval_2128 NC_017310.1 2389349 2390428 R PFAM: Methicillin resistance protein; KEGG: dde:Dde_1247 femAB family protein; Methicillin resistance protein complement(2389349..2390428) Desulfovibrio vulgaris RCH1 12866725 YP_005702911.1 CDS Deval_2129 NC_017310.1 2390935 2393265 R KEGG: dma:DMR_16780 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(2390935..2393265) Desulfovibrio vulgaris RCH1 12866726 YP_005702912.1 CDS Deval_2130 NC_017310.1 2393693 2394439 D KEGG: dde:Dde_2516 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; monofunctional biosynthetic peptidoglycan transglycosylase 2393693..2394439 Desulfovibrio vulgaris RCH1 12866727 YP_005702913.1 CDS Deval_2131 NC_017310.1 2394652 2395509 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dsa:Desal_0674 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(2394652..2395509) Desulfovibrio vulgaris RCH1 12866728 YP_005702914.1 CDS Deval_2132 NC_017310.1 2395667 2396518 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2395667..2396518) Desulfovibrio vulgaris RCH1 12866729 YP_005702915.1 CDS Deval_2133 NC_017310.1 2396515 2397708 R TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; SMART: AAA ATPase; CBS domain containing protein; glycine betaine/L-proline ABC transporter ATPase complement(2396515..2397708) Desulfovibrio vulgaris RCH1 12866730 YP_005702916.1 CDS Deval_2134 NC_017310.1 2398162 2400180 D PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: lip:LI0773 Kef-type K+ transport systems, membrane components; sodium/hydrogen exchanger 2398162..2400180 Desulfovibrio vulgaris RCH1 12866731 YP_005702917.1 CDS Deval_2135 NC_017310.1 2400256 2401683 D KEGG: mgm:Mmc1_2003 Sel1 domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 2400256..2401683 Desulfovibrio vulgaris RCH1 12866732 YP_005702918.1 CDS Deval_2136 NC_017310.1 2402011 2402640 D PFAM: Putitive phosphate transport regulator; KEGG: dma:DMR_08640 hypothetical protein; Putative phosphate transport regulator 2402011..2402640 Desulfovibrio vulgaris RCH1 12866733 YP_005702919.1 CDS Deval_2137 NC_017310.1 2402633 2403643 D PFAM: phosphate transporter; KEGG: dds:Ddes_1960 phosphate transporter; phosphate transporter 2402633..2403643 Desulfovibrio vulgaris RCH1 12866734 YP_005702920.1 CDS Deval_2138 NC_017310.1 2403741 2403962 R TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dds:Ddes_1959 transcriptional regulator, TraR/DksA family; phage/conjugal plasmid C-4 type zinc finger protein, TraR family complement(2403741..2403962) Desulfovibrio vulgaris RCH1 12866735 YP_005702921.1 CDS Deval_2139 NC_017310.1 2403974 2404465 R PFAM: Conserved hypothetical protein CHP00022; KEGG: tdn:Suden_0251 hypothetical protein; hypothetical protein complement(2403974..2404465) Desulfovibrio vulgaris RCH1 12866736 YP_005702922.1 CDS Deval_2140 NC_017310.1 2404727 2406814 D KEGG: dsa:Desal_2891 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2404727..2406814 Desulfovibrio vulgaris RCH1 12866737 YP_005702923.1 CDS Deval_2141 NC_017310.1 2407043 2407789 D KEGG: dde:Dde_1331 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2407043..2407789 Desulfovibrio vulgaris RCH1 12866738 YP_005702924.1 CDS Deval_2142 NC_017310.1 2408157 2409416 D KEGG: plu:plu0967 insecticidal toxin complex protein TccC3; hypothetical protein 2408157..2409416 Desulfovibrio vulgaris RCH1 12866739 YP_005702925.1 CDS Deval_2143 NC_017310.1 2409450 2409917 D PFAM: Tir chaperone family protein; KEGG: pst:PSPTO_5353 type III chaperone protein ShcA; Tir chaperone family protein 2409450..2409917 Desulfovibrio vulgaris RCH1 12866740 YP_005702926.1 CDS Deval_2144 NC_017310.1 2410135 2410884 D KEGG: dds:Ddes_1131 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; 6-phosphogluconolactonase 2410135..2410884 Desulfovibrio vulgaris RCH1 12866741 YP_005702927.1 CDS Deval_2145 NC_017310.1 2411166 2411894 R PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: dde:Dde_1317 hypothetical protein; hypothetical protein complement(2411166..2411894) Desulfovibrio vulgaris RCH1 12866742 YP_005702928.1 CDS Deval_2146 NC_017310.1 2411977 2414565 D TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: dde:Dde_1318 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; DNA topoisomerase III 2411977..2414565 Desulfovibrio vulgaris RCH1 12866743 YP_005702929.1 CDS Deval_2147 NC_017310.1 2414855 2416624 D KEGG: dds:Ddes_0349 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2414855..2416624 Desulfovibrio vulgaris RCH1 12866744 YP_005702930.1 CDS Deval_2148 NC_017310.1 2417236 2417730 D PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin, putative; rubrerythrin 2417236..2417730 Desulfovibrio vulgaris RCH1 12866745 YP_005702931.1 CDS Deval_2149 NC_017310.1 2417907 2418512 D KEGG: dma:DMR_45900 OmpR family two-component response regulator; PFAM: transcriptional regulator domain-containing protein; SMART: transcriptional regulator domain-containing protein; putative winged helix family wo component transcriptional regulator 2417907..2418512 Desulfovibrio vulgaris RCH1 12866746 YP_005702932.1 CDS Deval_2150 NC_017310.1 2418496 2420376 D PFAM: Carboxylyase-related protein; KEGG: dde:Dde_1323 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; carboxylyase 2418496..2420376 Desulfovibrio vulgaris RCH1 12866747 YP_005702933.1 CDS Deval_2151 NC_017310.1 2420585 2420821 D KEGG: apt:APA01_23580 peroxiredoxin; hypothetical protein 2420585..2420821 Desulfovibrio vulgaris RCH1 12866748 YP_005702934.1 CDS Deval_2152 NC_017310.1 2420802 2422274 D KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase; PFAM: UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase 2420802..2422274 Desulfovibrio vulgaris RCH1 12866749 YP_005702935.1 CDS Deval_2153 NC_017310.1 2422524 2422946 D KEGG: dds:Ddes_0981 hypothetical protein; hypothetical protein 2422524..2422946 Desulfovibrio vulgaris RCH1 12866750 YP_005702936.1 CDS Deval_2154 NC_017310.1 2423159 2425876 R KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; copper ion binding protein; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating P-type ATPase complement(2423159..2425876) Desulfovibrio vulgaris RCH1 12866751 YP_005702937.1 CDS Deval_2155 NC_017310.1 2426056 2426346 D KEGG: dde:Dde_1312 mercuric transport protein periplasmic component; manually curated; PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2426056..2426346 Desulfovibrio vulgaris RCH1 12866752 YP_005702938.1 CDS Deval_2156 NC_017310.1 2426443 2427345 R KEGG: dde:Dde_1310 hypothetical protein; hypothetical protein complement(2426443..2427345) Desulfovibrio vulgaris RCH1 12866753 YP_005702939.1 CDS Deval_2157 NC_017310.1 2427627 2428157 D KEGG: single-stranded nucleic acid binding R3H domain protein; hypothetical protein 2427627..2428157 Desulfovibrio vulgaris RCH1 12866754 YP_005702940.1 CDS Deval_2158 NC_017310.1 2428206 2428688 D PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA, putative; hydrogenase nickel incorporation protein HypA 2428206..2428688 Desulfovibrio vulgaris RCH1 12866755 YP_005702941.1 CDS Deval_2159 NC_017310.1 2428699 2429373 D KEGG: dde:Dde_1307 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; hydrogenase nickel incorporation protein HypB 2428699..2429373 Desulfovibrio vulgaris RCH1 12866756 YP_005702942.1 CDS Deval_2160 NC_017310.1 2429370 2430251 D PFAM: ATPase-like, ParA/MinD; KEGG: dde:Dde_1306 hypothetical protein; ParA/MinD-like ATPase 2429370..2430251 Desulfovibrio vulgaris RCH1 12866757 YP_005702943.1 CDS Deval_2161 NC_017310.1 2430554 2431783 D KEGG: dde:Dde_1441 Smr protein/MutS2-like; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; Smr protein/MutS2 2430554..2431783 Desulfovibrio vulgaris RCH1 12866758 YP_005702944.1 CDS Deval_2162 NC_017310.1 2432114 2432911 R TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(2432114..2432911) Desulfovibrio vulgaris RCH1 12866759 YP_005702945.1 CDS Deval_2163 NC_017310.1 2432911 2433330 R PFAM: nucleoside diphosphate kinase; KEGG: dba:Dbac_2890 nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase complement(2432911..2433330) Desulfovibrio vulgaris RCH1 12866760 YP_005702946.1 CDS Deval_2164 NC_017310.1 2433882 2435432 R PFAM: protein of unknown function DUF610 YibQ; KEGG: dde:Dde_1438 hypothetical protein; hypothetical protein complement(2433882..2435432) Desulfovibrio vulgaris RCH1 12866761 YP_005702947.1 CDS Deval_2165 NC_017310.1 2435513 2436799 R TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: dds:Ddes_0896 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease complement(2435513..2436799) Desulfovibrio vulgaris RCH1 12866762 YP_005702948.1 CDS Deval_2166 NC_017310.1 2436832 2438019 R PFAM: Peptidase M23; KEGG: dde:Dde_1436 M24/M37 family peptidase; peptidase M23 complement(2436832..2438019) Desulfovibrio vulgaris RCH1 12866763 YP_005702949.1 CDS Deval_2167 NC_017310.1 2438013 2438693 R KEGG: dba:Dbac_2870 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; Helix-hairpin-helix DNA-binding class 1; HhH-GPD family protein complement(2438013..2438693) Desulfovibrio vulgaris RCH1 12866764 YP_005702950.1 CDS Deval_2168 NC_017310.1 2438943 2439794 R PFAM: ribosomal L11 methyltransferase; KEGG: dde:Dde_1432 50S ribosomal protein L11P methyltransferase; ribosomal L11 methyltransferase complement(2438943..2439794) Desulfovibrio vulgaris RCH1 12866765 YP_005702951.1 CDS Deval_2169 NC_017310.1 2439798 2440490 R KEGG: drt:Dret_2155 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(2439798..2440490) Desulfovibrio vulgaris RCH1 12866766 YP_005702952.1 CDS Deval_2170 NC_017310.1 2440501 2441202 R KEGG: dde:Dde_1430 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(2440501..2441202) Desulfovibrio vulgaris RCH1 12866767 YP_005702953.1 CDS Deval_2171 NC_017310.1 2441264 2442076 R KEGG: dde:Dde_1429 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein complement(2441264..2442076) Desulfovibrio vulgaris RCH1 12866768 YP_005702954.1 CDS Deval_2172 NC_017310.1 2442134 2442862 R KEGG: dde:Dde_1428 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2442134..2442862) Desulfovibrio vulgaris RCH1 12866769 YP_005702955.1 CDS Deval_2173 NC_017310.1 2443272 2443592 R KEGG: dde:Dde_1427 hypothetical protein; hypothetical protein complement(2443272..2443592) Desulfovibrio vulgaris RCH1 12866770 YP_005702956.1 CDS Deval_2174 NC_017310.1 2444052 2445251 R KEGG: dde:Dde_1426 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; acetylornithine and succinylornithine aminotransferase complement(2444052..2445251) Desulfovibrio vulgaris RCH1 12866771 YP_005702957.1 CDS Deval_2175 NC_017310.1 2445456 2445968 R TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: dde:Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(2445456..2445968) Desulfovibrio vulgaris RCH1 12866772 YP_005702958.1 CDS Deval_2176 NC_017310.1 2446151 2448718 D TIGRFAM: alpha-glucan phosphorylase; KEGG: dde:Dde_1424 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 2446151..2448718 Desulfovibrio vulgaris RCH1 12866773 YP_005702959.1 CDS Deval_2177 NC_017310.1 2449059 2450471 D TIGRFAM: gid protein; KEGG: dde:Dde_1422 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A; hypothetical protein 2449059..2450471 Desulfovibrio vulgaris RCH1 12866774 YP_005702960.1 CDS Deval_2178 NC_017310.1 2450544 2450912 D KEGG: rpe:RPE_4080 hypothetical protein; hypothetical protein 2450544..2450912 Desulfovibrio vulgaris RCH1 12866775 YP_005702961.1 CDS Deval_2179 NC_017310.1 2451013 2452650 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(2451013..2452650) Desulfovibrio vulgaris RCH1 12866776 YP_005702962.1 CDS Deval_2180 NC_017310.1 2452777 2454501 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1486 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2452777..2454501 Desulfovibrio vulgaris RCH1 12866777 YP_005702963.1 CDS Deval_2181 NC_017310.1 2454498 2455745 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1485 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2454498..2455745 Desulfovibrio vulgaris RCH1 12866778 YP_005702964.1 CDS Deval_2182 NC_017310.1 2456006 2456596 R KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)-methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA guanosine-2'-O-methyltransferase complement(2456006..2456596) Desulfovibrio vulgaris RCH1 12866779 YP_005702965.1 CDS Deval_2183 NC_017310.1 2456798 2458225 D KEGG: dde:Dde_1483 hypothetical protein; hypothetical protein 2456798..2458225 Desulfovibrio vulgaris RCH1 12866780 YP_005702966.1 CDS Deval_2184 NC_017310.1 2458521 2459630 R PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1400 putative signal transduction protein; metal dependent phosphohydrolase complement(2458521..2459630) Desulfovibrio vulgaris RCH1 12866781 YP_005702967.1 CDS Deval_2185 NC_017310.1 2460177 2461832 D KEGG: dde:Dde_1399 ATPase; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; Fis family sigma-54 specific transcriptional regulator 2460177..2461832 Desulfovibrio vulgaris RCH1 12866782 YP_005702968.1 CDS Deval_2186 NC_017310.1 2461936 2462742 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1381 ferric reductase-like; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2461936..2462742 Desulfovibrio vulgaris RCH1 12866783 YP_005702969.1 CDS Deval_2187 NC_017310.1 2462966 2463625 R KEGG: dde:Dde_1379 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2462966..2463625) Desulfovibrio vulgaris RCH1 12866784 YP_005702970.1 CDS Deval_2188 NC_017310.1 2463622 2464425 R KEGG: dde:Dde_1378 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; hydroxyethylthiazole kinase complement(2463622..2464425) Desulfovibrio vulgaris RCH1 12866785 YP_005702971.1 CDS Deval_2189 NC_017310.1 2464755 2465921 R PFAM: aminotransferase class I and II; KEGG: rci:RRC4 putative aminotransferase; putative GntR family transcriptional regulator complement(2464755..2465921) Desulfovibrio vulgaris RCH1 12866786 YP_005702972.1 CDS Deval_2190 NC_017310.1 2465956 2466792 R PFAM: protein of unknown function DUF1009; KEGG: dde:Dde_1375 hypothetical protein; hypothetical protein complement(2465956..2466792) Desulfovibrio vulgaris RCH1 12866787 YP_005702973.1 CDS Deval_2191 NC_017310.1 2466992 2467795 R KEGG: dde:Dde_1374 UDP-N-acetylglucosamine acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase complement(2466992..2467795) Desulfovibrio vulgaris RCH1 12866788 YP_005702974.1 CDS Deval_2192 NC_017310.1 2467795 2468259 R KEGG: dde:Dde_1373 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ complement(2467795..2468259) Desulfovibrio vulgaris RCH1 12866789 YP_005702975.1 CDS Deval_2193 NC_017310.1 2468259 2469293 R KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase complement(2468259..2469293) Desulfovibrio vulgaris RCH1 12866790 YP_005702976.1 CDS Deval_2194 NC_017310.1 2469304 2469831 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1371 outer membrane protein OmpH, putative; outer membrane chaperone Skp complement(2469304..2469831) Desulfovibrio vulgaris RCH1 12866791 YP_005702977.1 CDS Deval_2195 NC_017310.1 2469982 2471688 R KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin complement(2469982..2471688) Desulfovibrio vulgaris RCH1 12866792 YP_005702978.1 CDS Deval_2196 NC_017310.1 2472085 2474775 R KEGG: dde:Dde_1368 OMP85 family outer membrane protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; outer membrane protein assembly complex, YaeT protein complement(2472085..2474775) Desulfovibrio vulgaris RCH1 12866793 YP_005702979.1 CDS Deval_2197 NC_017310.1 2474756 2475457 R KEGG: dde:Dde_1367 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2474756..2475457) Desulfovibrio vulgaris RCH1 12866794 YP_005702980.1 CDS Deval_2198 NC_017310.1 2475454 2476689 R KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; lipoprotein releasing system transmembrane protein LolC/E family complement(2475454..2476689) Desulfovibrio vulgaris RCH1 12866795 YP_005702981.1 CDS Deval_2199 NC_017310.1 2476697 2478280 R KEGG: dde:Dde_1365 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; lysyl-tRNA synthetase complement(2476697..2478280) Desulfovibrio vulgaris RCH1 12866796 YP_005702982.1 CDS Deval_2200 NC_017310.1 2478970 2479827 D KEGG: dac:Daci_0117 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2478970..2479827 Desulfovibrio vulgaris RCH1 12866798 YP_005702983.1 CDS Deval_2201 NC_017310.1 2479952 2482969 D PFAM: peptidase M16 domain protein; KEGG: dde:Dde_0444 M16 family peptidase putative; peptidase M16 domain-containing protein 2479952..2482969 Desulfovibrio vulgaris RCH1 12866799 YP_005702984.1 CDS Deval_2202 NC_017310.1 2482966 2483871 D KEGG: rce:RC1_3838 ABC transporter, ATP binding protein, putative; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2482966..2483871 Desulfovibrio vulgaris RCH1 12866800 YP_005702985.1 CDS Deval_2203 NC_017310.1 2483889 2484557 D KEGG: rce:RC1_3837 hypothetical protein; hypothetical protein 2483889..2484557 Desulfovibrio vulgaris RCH1 12866801 YP_005702986.1 CDS Deval_2204 NC_017310.1 2484554 2485918 D KEGG: rce:RC1_3836 hypothetical protein; hypothetical protein 2484554..2485918 Desulfovibrio vulgaris RCH1 12866802 YP_005702987.1 CDS Deval_2205 NC_017310.1 2485951 2488578 D PFAM: TonB-dependent receptor plug; KEGG: sdl:Sdel_1224 TonB-dependent receptor; TonB-dependent receptor plug 2485951..2488578 Desulfovibrio vulgaris RCH1 12866803 YP_005702988.1 CDS Deval_2206 NC_017310.1 2488631 2490550 D PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0448 ABC transporter, periplasmic substrate-binding protein; family 5 extracellular solute-binding protein 2488631..2490550 Desulfovibrio vulgaris RCH1 12866804 YP_005702989.1 CDS Deval_2207 NC_017310.1 2490550 2491671 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0449 putative peptide transport system permease protein; binding-protein-dependent transport system inner membrane protein 2490550..2491671 Desulfovibrio vulgaris RCH1 12866805 YP_005702990.1 CDS Deval_2208 NC_017310.1 2491668 2492699 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_1540 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2491668..2492699 Desulfovibrio vulgaris RCH1 12866806 YP_005702991.1 CDS Deval_2209 NC_017310.1 2492705 2494483 D KEGG: dde:Dde_0451 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2492705..2494483 Desulfovibrio vulgaris RCH1 12866807 YP_005702992.1 CDS Deval_2210 NC_017310.1 2494487 2495440 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein; MotA/TolQ/ExbB proton channel 2494487..2495440 Desulfovibrio vulgaris RCH1 12866808 YP_005702993.1 CDS Deval_2211 NC_017310.1 2495424 2495837 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_3630 biopolymer ExbD/TolR family transporter; biopolymer transport protein ExbD/TolR 2495424..2495837 Desulfovibrio vulgaris RCH1 12866809 YP_005702994.1 CDS Deval_2212 NC_017310.1 2495834 2496742 D KEGG: dba:Dbac_3059 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain; TonB family protein 2495834..2496742 Desulfovibrio vulgaris RCH1 12866810 YP_005702995.1 CDS Deval_2213 NC_017310.1 2497579 2498031 D PFAM: Tir chaperone family protein; KEGG: hypothetical protein; Tir chaperone family protein 2497579..2498031 Desulfovibrio vulgaris RCH1 12866812 YP_005702996.1 CDS Deval_2214 NC_017310.1 2498144 2500240 D KEGG: xce:Xcel_1159 chromosome segregation protein SMC; hypothetical protein 2498144..2500240 Desulfovibrio vulgaris RCH1 12866813 YP_005702997.1 CDS Deval_2215 NC_017310.1 2500487 2501878 R KEGG: dma:DMR_02000 NtrC family two-component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(2500487..2501878) Desulfovibrio vulgaris RCH1 12866814 YP_005702998.1 CDS Deval_2216 NC_017310.1 2501884 2503140 R KEGG: dde:Dde_3535 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2501884..2503140) Desulfovibrio vulgaris RCH1 12866815 YP_005702999.1 CDS Deval_2217 NC_017310.1 2503142 2504284 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dma:DMR_02380 dehydrogenase; iron-containing alcohol dehydrogenase complement(2503142..2504284) Desulfovibrio vulgaris RCH1 12866816 YP_005703000.1 CDS Deval_2218 NC_017310.1 2504773 2505654 R KEGG: dma:DMR_01980 hypothetical protein; hypothetical protein complement(2504773..2505654) Desulfovibrio vulgaris RCH1 12866817 YP_005703001.1 CDS Deval_2219 NC_017310.1 2505723 2506214 R KEGG: dma:DMR_01970 hypothetical protein; hypothetical protein complement(2505723..2506214) Desulfovibrio vulgaris RCH1 12866818 YP_005703002.1 CDS Deval_2220 NC_017310.1 2506472 2507359 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; KEGG: dma:DMR_01960 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(2506472..2507359) Desulfovibrio vulgaris RCH1 12866819 YP_005703003.1 CDS Deval_2221 NC_017310.1 2507352 2508434 R KEGG: drt:Dret_2312 iron-sulfur binding protein; iron-sulfur binding protein complement(2507352..2508434) Desulfovibrio vulgaris RCH1 12866820 YP_005703004.1 CDS Deval_2222 NC_017310.1 2508431 2509915 R PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dds:Ddes_2101 methyl-viologen-reducing hydrogenase delta subunit; methyl-viologen-reducing hydrogenase delta subunit complement(2508431..2509915) Desulfovibrio vulgaris RCH1 12866821 YP_005703005.1 CDS Deval_2223 NC_017310.1 2509903 2511861 R PFAM: FAD dependent oxidoreductase; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A; FAD dependent oxidoreductase complement(2509903..2511861) Desulfovibrio vulgaris RCH1 12866822 YP_005703006.1 CDS Deval_2224 NC_017310.1 2511858 2512862 R KEGG: dba:Dbac_0849 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; CoB--CoM heterodisulfide reductase complement(2511858..2512862) Desulfovibrio vulgaris RCH1 12866823 YP_005703007.1 CDS Deval_2225 NC_017310.1 2512859 2513419 R KEGG: dma:DMR_01900 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C complement(2512859..2513419) Desulfovibrio vulgaris RCH1 12866824 YP_005703008.1 CDS Deval_2226 NC_017310.1 2513647 2514828 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dba:Dbac_3326 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(2513647..2514828) Desulfovibrio vulgaris RCH1 12866825 YP_005703009.1 CDS Deval_2227 NC_017310.1 2515413 2515913 R KEGG: dma:DMR_43050 hypothetical membrane protein; hypothetical protein complement(2515413..2515913) Desulfovibrio vulgaris RCH1 12866826 YP_005703010.1 CDS Deval_2228 NC_017310.1 2516268 2517059 R KEGG: hch:HCH_04173 amino acid ABC transporter periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein complement(2516268..2517059) Desulfovibrio vulgaris RCH1 12866827 YP_005703011.1 CDS Deval_2229 NC_017310.1 2517336 2518052 D KEGG: syn:slr1516 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; Superoxide dismutase 2517336..2518052 Desulfovibrio vulgaris RCH1 12866828 YP_005703012.1 CDS Deval_2230 NC_017310.1 2518236 2518652 D PFAM: EF-Hand, Calmodulin; KEGG: dde:Dde_1362 EF hand domain-containing protein; calmodulin 2518236..2518652 Desulfovibrio vulgaris RCH1 12866829 YP_005703013.1 CDS Deval_2231 NC_017310.1 2518994 2521921 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; GAF domain protein; KEGG: dde:Dde_1360 GAF sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(2518994..2521921) Desulfovibrio vulgaris RCH1 12866830 YP_005703014.1 CDS Deval_2232 NC_017310.1 2522115 2524157 D manually curated; PFAM: Radical SAM domain protein; Radical SAM domain protein; KEGG: dde:Dde_1359 elongator protein 3/MiaB/NifB; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2522115..2524157 Desulfovibrio vulgaris RCH1 12866831 YP_005703015.1 CDS Deval_2233 NC_017310.1 2524352 2526112 R KEGG: gau:GAU_0330 flagellar motor switch protein FliG; hypothetical protein complement(2524352..2526112) Desulfovibrio vulgaris RCH1 12866832 YP_005703016.1 CDS Deval_2234 NC_017310.1 2526465 2527892 D KEGG: dde:Dde_1358 hypothetical protein; hypothetical protein 2526465..2527892 Desulfovibrio vulgaris RCH1 12866833 YP_005703017.1 CDS Deval_2235 NC_017310.1 2528222 2528704 D PFAM: protein of unknown function DUF55; KEGG: lip:LI0511 hypothetical protein; hypothetical protein 2528222..2528704 Desulfovibrio vulgaris RCH1 12866834 YP_005703018.1 CDS Deval_2236 NC_017310.1 2528701 2528922 D PFAM: SlyX family protein; KEGG: dde:Dde_1356 SlyX protein; SlyX family protein 2528701..2528922 Desulfovibrio vulgaris RCH1 12866835 YP_005703019.1 CDS Deval_2237 NC_017310.1 2529358 2529777 R PFAM: VanZ family protein; KEGG: dma:DMR_06500 hypothetical membrane protein; VanZ family protein complement(2529358..2529777) Desulfovibrio vulgaris RCH1 12866836 YP_005703020.1 CDS Deval_2238 NC_017310.1 2530138 2530821 R KEGG: pol:Bpro_2041 rhodanese-like protein; manually curated; SMART: Rhodanese domain protein; Rhodanese domain-containing protein complement(2530138..2530821) Desulfovibrio vulgaris RCH1 12866837 YP_005703021.1 CDS Deval_2239 NC_017310.1 2530982 2531311 R KEGG: dde:Dde_1354 hypothetical protein; hypothetical protein complement(2530982..2531311) Desulfovibrio vulgaris RCH1 12866838 YP_005703022.1 CDS Deval_2240 NC_017310.1 2531445 2531642 R PFAM: 4-oxalocrotonate tautomerase; KEGG: afu:AF0669 4-oxalocrotonate tautomerase, putative; 4-oxalocrotonate tautomerase complement(2531445..2531642) Desulfovibrio vulgaris RCH1 12866839 YP_005703023.1 CDS Deval_2241 NC_017310.1 2531645 2532154 R PFAM: nitroreductase; KEGG: dsa:Desal_3763 nitroreductase; nitroreductase complement(2531645..2532154) Desulfovibrio vulgaris RCH1 12866840 YP_005703024.1 CDS Deval_2242 NC_017310.1 2532256 2532735 D PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator; HxlR family transcriptional regulator 2532256..2532735 Desulfovibrio vulgaris RCH1 12866841 YP_005703025.1 CDS Deval_2243 NC_017310.1 2533161 2534075 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: azl:AZL_024540 hypothetical protein; hypothetical protein complement(2533161..2534075) Desulfovibrio vulgaris RCH1 12866842 YP_005703026.1 CDS Deval_2244 NC_017310.1 2534168 2535070 R KEGG: dde:Dde_1350 RarD protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; RarD protein, DMT superfamily transporter complement(2534168..2535070) Desulfovibrio vulgaris RCH1 12866843 YP_005703027.1 CDS Deval_2245 NC_017310.1 2535311 2535865 R KEGG: dde:Dde_1349 hypothetical protein; hypothetical protein complement(2535311..2535865) Desulfovibrio vulgaris RCH1 12866844 YP_005703028.1 CDS Deval_2246 NC_017310.1 2535988 2536446 R KEGG: dde:Dde_1150 outer membrane lipoprotein-like; outer membrane lipoprotein-like protein complement(2535988..2536446) Desulfovibrio vulgaris RCH1 12866845 YP_005703029.1 CDS Deval_2247 NC_017310.1 2536780 2537046 R KEGG: dds:Ddes_2020 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein complement(2536780..2537046) Desulfovibrio vulgaris RCH1 12866846 YP_005703030.1 CDS Deval_2248 NC_017310.1 2537308 2541549 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dps:DP3110 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2537308..2541549 Desulfovibrio vulgaris RCH1 12866847 YP_005703031.1 CDS Deval_2249 NC_017310.1 2541888 2542397 R KEGG: dde:Dde_1345 hypothetical protein; hypothetical protein complement(2541888..2542397) Desulfovibrio vulgaris RCH1 12866848 YP_005703032.1 CDS Deval_2250 NC_017310.1 2542575 2543609 D PFAM: Mg2 transporter protein CorA family protein; KEGG: lip:LI0097 CorA, CorA-like Mg2+ transporter protein; Mg2 transporter protein CorA family protein 2542575..2543609 Desulfovibrio vulgaris RCH1 12866849 YP_005703033.1 CDS Deval_2251 NC_017310.1 2543915 2544547 D SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1504 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2543915..2544547 Desulfovibrio vulgaris RCH1 12866850 YP_005703034.1 CDS Deval_2252 NC_017310.1 2544625 2545845 R PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter, permease protein; hypothetical protein complement(2544625..2545845) Desulfovibrio vulgaris RCH1 12866851 YP_005703035.1 CDS Deval_2253 NC_017310.1 2545846 2547312 R PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transport system, permease component; hypothetical protein complement(2545846..2547312) Desulfovibrio vulgaris RCH1 12866852 YP_005703036.1 CDS Deval_2254 NC_017310.1 2547309 2548208 R KEGG: dde:Dde_1339 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2547309..2548208) Desulfovibrio vulgaris RCH1 12866853 YP_005703037.1 CDS Deval_2255 NC_017310.1 2548205 2549440 R KEGG: dde:Dde_1340 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(2548205..2549440) Desulfovibrio vulgaris RCH1 12866854 YP_005703038.1 CDS Deval_2256 NC_017310.1 2549912 2550820 R KEGG: dde:Dde_1342 hypothetical protein; hypothetical protein complement(2549912..2550820) Desulfovibrio vulgaris RCH1 12866855 YP_005703039.1 CDS Deval_2257 NC_017310.1 2551025 2551435 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1343 HSP20 family protein; heat shock protein Hsp20 2551025..2551435 Desulfovibrio vulgaris RCH1 12866856 YP_005703040.1 CDS Deval_2258 NC_017310.1 2551496 2551849 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1344 HSP20 family protein; heat shock protein Hsp20 2551496..2551849 Desulfovibrio vulgaris RCH1 12866857 YP_005703041.1 CDS Deval_2259 NC_017310.1 2552075 2552701 R PFAM: Uncharacterised conserved protein UCP020606; KEGG: dde:Dde_1503 hypothetical protein; hypothetical protein complement(2552075..2552701) Desulfovibrio vulgaris RCH1 12866858 YP_005703042.1 CDS Deval_2260 NC_017310.1 2552882 2553775 R PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin; flagellin domain-containing protein complement(2552882..2553775) Desulfovibrio vulgaris RCH1 12866859 YP_005703043.1 CDS Deval_2261 NC_017310.1 2554034 2554957 D TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: dde:Dde_1500 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2554034..2554957 Desulfovibrio vulgaris RCH1 12866860 YP_005703044.1 CDS Deval_2262 NC_017310.1 2555076 2555651 R KEGG: dds:Ddes_2285 hypothetical protein; hypothetical protein complement(2555076..2555651) Desulfovibrio vulgaris RCH1 12866861 YP_005703045.1 CDS Deval_2263 NC_017310.1 2555824 2556675 D KEGG: dde:Dde_1498 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 2555824..2556675 Desulfovibrio vulgaris RCH1 12866862 YP_005703046.1 CDS Deval_2264 NC_017310.1 2556727 2557902 D TIGRFAM: S-adenosylmethionine synthetase; KEGG: dde:Dde_1496 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 2556727..2557902 Desulfovibrio vulgaris RCH1 12866863 YP_005703047.1 CDS Deval_2265 NC_017310.1 2558073 2558279 D PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dba:Dbac_2259 twin-arginine translocation protein, TatA/E family subunit; sec-independent translocation protein mttA/Hcf106 2558073..2558279 Desulfovibrio vulgaris RCH1 12866864 YP_005703048.1 CDS Deval_2266 NC_017310.1 2558576 2560288 R KEGG: dba:Dbac_1045 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport complement(2558576..2560288) Desulfovibrio vulgaris RCH1 12866865 YP_005703049.1 CDS Deval_2267 NC_017310.1 2560897 2561196 R KEGG: swd:Swoo_3198 enoyl-CoA hydratase/isomerase; hypothetical protein complement(2560897..2561196) Desulfovibrio vulgaris RCH1 12866866 YP_005703050.1 CDS Deval_2268 NC_017310.1 2561418 2562368 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_0779 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2561418..2562368 Desulfovibrio vulgaris RCH1 12866867 YP_005703051.1 CDS Deval_2269 NC_017310.1 2568389 2569003 D KEGG: dde:Dde_2591 hypothetical protein; hypothetical protein 2568389..2569003 Desulfovibrio vulgaris RCH1 12866874 YP_005703052.1 CDS Deval_2270 NC_017310.1 2569168 2569698 D KEGG: dde:Dde_2592 hypothetical protein; hypothetical protein 2569168..2569698 Desulfovibrio vulgaris RCH1 12866875 YP_005703053.1 CDS Deval_2271 NC_017310.1 2569710 2570729 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2569710..2570729 Desulfovibrio vulgaris RCH1 12866876 YP_005703054.1 CDS Deval_2272 NC_017310.1 2570726 2571628 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2570726..2571628 Desulfovibrio vulgaris RCH1 12866877 YP_005703055.1 CDS Deval_2273 NC_017310.1 2572070 2573689 D PFAM: SMC domain protein; KEGG: dde:Dde_2596 DNA repair protein RecN; SMC domain-containing protein 2572070..2573689 Desulfovibrio vulgaris RCH1 12866878 YP_005703056.1 CDS Deval_2274 NC_017310.1 2573692 2575275 D KEGG: dde:Dde_2597 hypothetical protein; hypothetical protein 2573692..2575275 Desulfovibrio vulgaris RCH1 12866879 YP_005703057.1 CDS Deval_2275 NC_017310.1 2575599 2576468 D KEGG: pesticin domain protein; hypothetical protein 2575599..2576468 Desulfovibrio vulgaris RCH1 12866880 YP_005703058.1 CDS Deval_2276 NC_017310.1 2576829 2579489 R TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; KEGG: dde:Dde_2598 ribonuclease R; SMART: Cold shock protein; ribonuclease R complement(2576829..2579489) Desulfovibrio vulgaris RCH1 12866881 YP_005703059.1 CDS Deval_2277 NC_017310.1 2579519 2580583 R TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: dde:Dde_2600 lipid-A-disaccharide synthase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(2579519..2580583) Desulfovibrio vulgaris RCH1 12866882 YP_005703060.1 CDS Deval_2278 NC_017310.1 2580750 2581451 R PFAM: protein of unknown function UPF0005; KEGG: dma:DMR_44900 hypothetical membrane protein; hypothetical protein complement(2580750..2581451) Desulfovibrio vulgaris RCH1 12866883 YP_005703061.1 CDS Deval_2279 NC_017310.1 2581946 2583244 D manually curated; KEGG: dal:Dalk_2776 protein of unknown function DUF224 cysteine-rich region domain protein; manually curated; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; Contains selenocysteine; hypothetical protein 2581946..2583244 Desulfovibrio vulgaris RCH1 12866884 YP_005703062.1 CDS Deval_2280 NC_017310.1 2583550 2585889 D PFAM: glycoside hydrolase family 57; KEGG: dde:Dde_2603 hypothetical protein; glycoside hydrolase family protein 2583550..2585889 Desulfovibrio vulgaris RCH1 12866885 YP_005703063.1 CDS Deval_2281 NC_017310.1 2586186 2586668 R KEGG: dde:Dde_1063 hypothetical protein; hypothetical protein complement(2586186..2586668) Desulfovibrio vulgaris RCH1 12866886 YP_005703064.1 CDS Deval_2282 NC_017310.1 2586929 2587771 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_3636 ferredoxin-NADP(+) reductase subunit alpha; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2586929..2587771 Desulfovibrio vulgaris RCH1 12866887 YP_005703065.1 CDS Deval_2283 NC_017310.1 2587764 2589194 D KEGG: dde:Dde_3635 putative oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase (NADPH), homotetrameric 2587764..2589194 Desulfovibrio vulgaris RCH1 12866888 YP_005703066.1 CDS Deval_2284 NC_017310.1 2589436 2590248 D KEGG: dde:Dde_1062 phosphate binding protein; TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; phosphate binding protein 2589436..2590248 Desulfovibrio vulgaris RCH1 12866889 YP_005703067.1 CDS Deval_2285 NC_017310.1 2590328 2591221 D KEGG: dde:Dde_1061 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2590328..2591221 Desulfovibrio vulgaris RCH1 12866890 YP_005703068.1 CDS Deval_2286 NC_017310.1 2591308 2592237 D KEGG: dde:Dde_1060 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2591308..2592237 Desulfovibrio vulgaris RCH1 12866891 YP_005703069.1 CDS Deval_2287 NC_017310.1 2592692 2593405 R KEGG: dat:HRM2_47150 FdhB8; Formate dehydrogenase subunit beta complement(2592692..2593405) Desulfovibrio vulgaris RCH1 12866892 YP_005703070.1 CDS Deval_2288 NC_017310.1 2593585 2596596 R manually curated; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; manually curated; Contains selenocysteine; KEGG: dba:Dbac_0971 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(2593585..2596596) Desulfovibrio vulgaris RCH1 12866893 YP_005703071.1 CDS Deval_2289 NC_017310.1 2596613 2598358 R PFAM: Cytochrome c, class III, conserved region; KEGG: drt:Dret_0454 cytochrome c family protein; cytochrome c, class III, conserved region complement(2596613..2598358) Desulfovibrio vulgaris RCH1 12866894 YP_005703072.1 CDS Deval_2290 NC_017310.1 2598385 2599677 R KEGG: drt:Dret_0454 cytochrome c family protein; cytochrome c family protein complement(2598385..2599677) Desulfovibrio vulgaris RCH1 12866895 YP_005703073.1 CDS Deval_2291 NC_017310.1 2599681 2600745 R KEGG: drt:Dret_0453 hypothetical protein; hypothetical protein complement(2599681..2600745) Desulfovibrio vulgaris RCH1 12866896 YP_005703074.1 CDS Deval_2292 NC_017310.1 2601140 2601685 R PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_2652 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2601140..2601685) Desulfovibrio vulgaris RCH1 12866897 YP_005703075.1 CDS Deval_2293 NC_017310.1 2601734 2602921 R KEGG: dds:Ddes_2080 hypothetical protein; hypothetical protein complement(2601734..2602921) Desulfovibrio vulgaris RCH1 12866898 YP_005703076.1 CDS Deval_2294 NC_017310.1 2603667 2603957 D PFAM: Late competence development protein ComFB; KEGG: dde:Dde_1058 hypothetical protein; late competence development protein ComFB 2603667..2603957 Desulfovibrio vulgaris RCH1 12866899 YP_005703077.1 CDS Deval_2295 NC_017310.1 2604528 2605352 D KEGG: dde:Dde_1057 histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; HisJ family histidinol phosphate phosphatase 2604528..2605352 Desulfovibrio vulgaris RCH1 12866900 YP_005703078.1 CDS Deval_2296 NC_017310.1 2605358 2607256 D KEGG: dde:Dde_1055 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2605358..2607256 Desulfovibrio vulgaris RCH1 12866901 YP_005703079.1 CDS Deval_2297 NC_017310.1 2607342 2608268 D KEGG: dde:Dde_1054 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 2607342..2608268 Desulfovibrio vulgaris RCH1 12866902 YP_005703080.1 CDS Deval_2298 NC_017310.1 2608778 2609764 D KEGG: dba:Dbac_0599 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2608778..2609764 Desulfovibrio vulgaris RCH1 12866903 YP_005703081.1 CDS Deval_2299 NC_017310.1 2609951 2610811 D PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_1051 HtpX-2 peptidase; peptidase M48 Ste24p 2609951..2610811 Desulfovibrio vulgaris RCH1 12866904 YP_005703082.1 CDS Deval_2300 NC_017310.1 2610886 2611419 D PFAM: thioesterase superfamily protein; KEGG: dde:Dde_1049 phenylacetic acid degradation-related protein; thioesterase superfamily protein 2610886..2611419 Desulfovibrio vulgaris RCH1 12866905 YP_005703083.1 CDS Deval_2301 NC_017310.1 2611449 2611901 D KEGG: dds:Ddes_2053 hypothetical protein; hypothetical protein 2611449..2611901 Desulfovibrio vulgaris RCH1 12866906 YP_005703084.1 CDS Deval_2302 NC_017310.1 2612137 2612871 R KEGG: lip:LI1049 hypothetical protein; hypothetical protein complement(2612137..2612871) Desulfovibrio vulgaris RCH1 12866907 YP_005703085.1 CDS Deval_2303 NC_017310.1 2612896 2613150 R KEGG: rpe:RPE_2486 hypothetical protein; hypothetical protein complement(2612896..2613150) Desulfovibrio vulgaris RCH1 12866908 YP_005703086.1 CDS Deval_2304 NC_017310.1 2613418 2614767 R KEGG: dde:Dde_1047 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ complement(2613418..2614767) Desulfovibrio vulgaris RCH1 12866909 YP_005703087.1 CDS Deval_2305 NC_017310.1 2614817 2616043 R KEGG: dde:Dde_1046 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; cell division protein FtsA complement(2614817..2616043) Desulfovibrio vulgaris RCH1 12866910 YP_005703088.1 CDS Deval_2306 NC_017310.1 2616074 2616910 R PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dds:Ddes_1116 polypeptide-transport-associated domain protein FtsQ-type; polypeptide-transport-associated domain-containing protein FtsQ-type complement(2616074..2616910) Desulfovibrio vulgaris RCH1 12866911 YP_005703089.1 CDS Deval_2307 NC_017310.1 2616901 2617791 R TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dde:Dde_1044 UDP-N-acetylmuramate dehydrogenase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2616901..2617791) Desulfovibrio vulgaris RCH1 12866912 YP_005703090.1 CDS Deval_2308 NC_017310.1 2617793 2619157 R KEGG: dde:Dde_1043 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; UDP-N-acetylmuramate--L-alanine ligase complement(2617793..2619157) Desulfovibrio vulgaris RCH1 12866913 YP_005703091.1 CDS Deval_2309 NC_017310.1 2619168 2620265 R KEGG: dde:Dde_1042 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase complement(2619168..2620265) Desulfovibrio vulgaris RCH1 12866914 YP_005703092.1 CDS Deval_2310 NC_017310.1 2620269 2621411 R KEGG: dds:Ddes_1112 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; cell division protein FtsW complement(2620269..2621411) Desulfovibrio vulgaris RCH1 12866915 YP_005703093.1 CDS Deval_2311 NC_017310.1 2621408 2622709 R KEGG: dds:Ddes_1111 UDP-N-acetylmuramoylalanine/D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(2621408..2622709) Desulfovibrio vulgaris RCH1 12866916 YP_005703094.1 CDS Deval_2312 NC_017310.1 2622725 2623801 R KEGG: dde:Dde_1039 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2622725..2623801) Desulfovibrio vulgaris RCH1 12866917 YP_005703095.1 CDS Deval_2313 NC_017310.1 2623791 2625227 R KEGG: dde:Dde_1038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase complement(2623791..2625227) Desulfovibrio vulgaris RCH1 12866918 YP_005703096.1 CDS Deval_2314 NC_017310.1 2625218 2626678 R KEGG: dde:Dde_1037 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramyl tripeptide synthetase complement(2625218..2626678) Desulfovibrio vulgaris RCH1 12866919 YP_005703097.1 CDS Deval_2315 NC_017310.1 2626675 2628747 R KEGG: dds:Ddes_1107 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; peptidoglycan glycosyltransferase complement(2626675..2628747) Desulfovibrio vulgaris RCH1 12866920 YP_005703098.1 CDS Deval_2316 NC_017310.1 2628762 2629049 R KEGG: dde:Dde_1035 hypothetical protein; hypothetical protein complement(2628762..2629049) Desulfovibrio vulgaris RCH1 12866921 YP_005703099.1 CDS Deval_2317 NC_017310.1 2629052 2630023 R KEGG: dds:Ddes_1105 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW complement(2629052..2630023) Desulfovibrio vulgaris RCH1 12866922 YP_005703100.1 CDS Deval_2318 NC_017310.1 2630037 2630486 R KEGG: dde:Dde_1033 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain; MraZ protein complement(2630037..2630486) Desulfovibrio vulgaris RCH1 12866923 YP_005703101.1 CDS Deval_2319 NC_017310.1 2630640 2632049 D TIGRFAM: pyruvate kinase; KEGG: dde:Dde_1032 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2630640..2632049 Desulfovibrio vulgaris RCH1 12866924 YP_005703102.1 CDS Deval_2320 NC_017310.1 2632052 2633107 D KEGG: dde:Dde_1031 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2632052..2633107 Desulfovibrio vulgaris RCH1 12866925 YP_005703103.1 CDS Deval_2321 NC_017310.1 2633327 2633812 R PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein; hypothetical protein complement(2633327..2633812) Desulfovibrio vulgaris RCH1 12866926 YP_005703104.1 CDS Deval_2322 NC_017310.1 2634174 2635415 R KEGG: dde:Dde_2605 hypothetical protein; hypothetical protein complement(2634174..2635415) Desulfovibrio vulgaris RCH1 12866927 YP_005703105.1 CDS Deval_2323 NC_017310.1 2635613 2636047 D KEGG: dde:Dde_2607 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; 50S ribosomal protein L13 2635613..2636047 Desulfovibrio vulgaris RCH1 12866928 YP_005703106.1 CDS Deval_2324 NC_017310.1 2636066 2636458 D PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9; 30S ribosomal protein S9 2636066..2636458 Desulfovibrio vulgaris RCH1 12866929 YP_005703107.1 CDS Deval_2325 NC_017310.1 2636455 2636655 R KEGG: dre:570287 si:dkeyp-122a9.3; hypothetical protein complement(2636455..2636655) Desulfovibrio vulgaris RCH1 12866930 YP_005703108.1 CDS Deval_2326 NC_017310.1 2637013 2637552 D PFAM: shikimate kinase; KEGG: dde:Dde_2609 shikimate kinase; shikimate kinase 2637013..2637552 Desulfovibrio vulgaris RCH1 12866931 YP_005703109.1 CDS Deval_2327 NC_017310.1 2637545 2638147 D KEGG: dde:Dde_2610 hypothetical protein; hypothetical protein 2637545..2638147 Desulfovibrio vulgaris RCH1 12866932 YP_005703110.1 CDS Deval_2328 NC_017310.1 2638177 2638653 D KEGG: dsa:Desal_1060 putative lipoprotein; putative lipoprotein 2638177..2638653 Desulfovibrio vulgaris RCH1 12866933 YP_005703111.1 CDS Deval_2329 NC_017310.1 2639173 2639586 D PFAM: Cytochrome c, class III, conserved region; KEGG: dde:Dde_3754 cytochrome c3, putative; cytochrome c, class III, conserved region 2639173..2639586 Desulfovibrio vulgaris RCH1 12866934 YP_005703112.1 CDS Deval_2330 NC_017310.1 2639583 2640557 D TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_3755 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 2639583..2640557 Desulfovibrio vulgaris RCH1 12868173 YP_005703113.1 CDS Deval_2331 NC_017310.1 2640570 2642219 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2; nickel-dependent hydrogenase large subunit 2640570..2642219 Desulfovibrio vulgaris RCH1 12868174 YP_005703114.1 CDS Deval_2332 NC_017310.1 2642362 2642760 R PFAM: ROSMUCR transcriptional regulator; KEGG: lip:LI0064 transcriptional regulator; MucR family transcriptional regulator complement(2642362..2642760) Desulfovibrio vulgaris RCH1 12868175 YP_005703115.1 CDS Deval_2333 NC_017310.1 2643113 2644294 R KEGG: dde:Dde_2630 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; phosphoglycerate kinase complement(2643113..2644294) Desulfovibrio vulgaris RCH1 12868176 YP_005703116.1 CDS Deval_2334 NC_017310.1 2644431 2646425 R KEGG: dde:Dde_2631 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; transketolase complement(2644431..2646425) Desulfovibrio vulgaris RCH1 12868177 YP_005703117.1 CDS Deval_2335 NC_017310.1 2646516 2647184 R TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(2646516..2647184) Desulfovibrio vulgaris RCH1 12868178 YP_005703118.1 CDS Deval_2336 NC_017310.1 2647232 2647615 R KEGG: dde:Dde_2633 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator complement(2647232..2647615) Desulfovibrio vulgaris RCH1 12868179 YP_005703119.1 CDS Deval_2337 NC_017310.1 2647640 2650036 R KEGG: dde:Dde_2634 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta complement(2647640..2650036) Desulfovibrio vulgaris RCH1 12868180 YP_005703120.1 CDS Deval_2338 NC_017310.1 2650216 2651253 R KEGG: dde:Dde_2635 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha complement(2650216..2651253) Desulfovibrio vulgaris RCH1 12868181 YP_005703121.1 CDS Deval_2339 NC_017310.1 2651425 2651778 R KEGG: dde:Dde_2636 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; 50S ribosomal protein L20 complement(2651425..2651778) Desulfovibrio vulgaris RCH1 12868182 YP_005703122.1 CDS Deval_2340 NC_017310.1 2651861 2652058 R KEGG: dde:Dde_2637 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; 50S ribosomal protein L35 complement(2651861..2652058) Desulfovibrio vulgaris RCH1 12868183 YP_005703123.1 CDS Deval_2341 NC_017310.1 2652228 2652758 R KEGG: dds:Ddes_0489 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; translation initiation factor IF-3 complement(2652228..2652758) Desulfovibrio vulgaris RCH1 12868184 YP_005703124.1 CDS Deval_2342 NC_017310.1 2652766 2654700 R KEGG: dde:Dde_2639 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein; threonyl-tRNA synthetase complement(2652766..2654700) Desulfovibrio vulgaris RCH1 12868185 YP_005703125.1 CDS Deval_2343 NC_017310.1 2655013 2656155 R PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dds:Ddes_0545 2-hydroxyglutaryl-CoA dehydratase D-component; 2-hydroxyglutaryl-CoA dehydratase subunit D complement(2655013..2656155) Desulfovibrio vulgaris RCH1 12868187 YP_005703126.1 CDS Deval_2344 NC_017310.1 2656163 2656972 R TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: dds:Ddes_0546 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA-substrate-specific enzyme activase complement(2656163..2656972) Desulfovibrio vulgaris RCH1 12868188 YP_005703127.1 CDS Deval_2345 NC_017310.1 2657385 2659085 D KEGG: dde:Dde_2641 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane; hybrid cluster protein 2657385..2659085 Desulfovibrio vulgaris RCH1 12868189 YP_005703128.1 CDS Deval_2346 NC_017310.1 2659144 2659959 D KEGG: dde:Dde_2642 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2659144..2659959 Desulfovibrio vulgaris RCH1 12868190 YP_005703129.1 CDS Deval_2347 NC_017310.1 2660427 2661587 D PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_1164 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2660427..2661587 Desulfovibrio vulgaris RCH1 12868191 YP_005703130.1 CDS Deval_2348 NC_017310.1 2661571 2663193 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dsa:Desal_2536 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2661571..2663193 Desulfovibrio vulgaris RCH1 12868192 YP_005703131.1 CDS Deval_2349 NC_017310.1 2663499 2664185 R KEGG: dde:Dde_2644 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; CarD family transcriptional regulator complement(2663499..2664185) Desulfovibrio vulgaris RCH1 12868193 YP_005703132.1 CDS Deval_2350 NC_017310.1 2664189 2664818 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bam:Bamb_0105 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) complement(2664189..2664818) Desulfovibrio vulgaris RCH1 12868194 YP_005703133.1 CDS Deval_2351 NC_017310.1 2665073 2665348 D KEGG: dde:Dde_2645 hypothetical protein; hypothetical protein 2665073..2665348 Desulfovibrio vulgaris RCH1 12868195 YP_005703134.1 CDS Deval_2352 NC_017310.1 2665608 2666912 R KEGG: metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(2665608..2666912) Desulfovibrio vulgaris RCH1 12868196 YP_005703135.1 CDS Deval_2353 NC_017310.1 2667180 2668571 R KEGG: dde:Dde_2648 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase complement(2667180..2668571) Desulfovibrio vulgaris RCH1 12868197 YP_005703136.1 CDS Deval_2354 NC_017310.1 2668745 2668972 R PFAM: nitrogen-fixing NifU domain protein; KEGG: drt:Dret_1408 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein complement(2668745..2668972) Desulfovibrio vulgaris RCH1 12868198 YP_005703137.1 CDS Deval_2355 NC_017310.1 2669093 2669977 R KEGG: dde:Dde_2650 hypothetical protein; hypothetical protein complement(2669093..2669977) Desulfovibrio vulgaris RCH1 12868199 YP_005703138.1 CDS Deval_2356 NC_017310.1 2669964 2671385 R KEGG: dde:Dde_2651 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein complement(2669964..2671385) Desulfovibrio vulgaris RCH1 12868200 YP_005703139.1 CDS Deval_2357 NC_017310.1 2671532 2671900 D KEGG: dde:Dde_2652 hypothetical protein; hypothetical protein 2671532..2671900 Desulfovibrio vulgaris RCH1 12868201 YP_005703140.1 CDS Deval_2358 NC_017310.1 2672188 2673180 R TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2654 biotin--acetyl-CoA-carboxylase ligase; SMART: regulatory protein ArsR; biotin--acetyl-CoA-carboxylase ligase complement(2672188..2673180) Desulfovibrio vulgaris RCH1 12868202 YP_005703141.1 CDS Deval_2359 NC_017310.1 2673263 2674348 D SMART: Elongator protein 3/MiaB/NifB; biotin and thiamin synthesis associated; TIGRFAM: biotin synthase; KEGG: dde:Dde_2655 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; biotin synthase 2673263..2674348 Desulfovibrio vulgaris RCH1 12868203 YP_005703142.1 CDS Deval_2360 NC_017310.1 2674345 2675973 D KEGG: dde:Dde_2656 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2674345..2675973 Desulfovibrio vulgaris RCH1 12868204 YP_005703143.1 CDS Deval_2361 NC_017310.1 2675970 2676356 D KEGG: sfu:Sfum_3718 hypothetical protein; hypothetical protein 2675970..2676356 Desulfovibrio vulgaris RCH1 12868205 YP_005703144.1 CDS Deval_2362 NC_017310.1 2676353 2677381 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 2676353..2677381 Desulfovibrio vulgaris RCH1 12868206 YP_005703145.1 CDS Deval_2363 NC_017310.1 2677481 2677888 D KEGG: dde:Dde_2659 acyl carrier protein, putative; acyl carrier protein 2677481..2677888 Desulfovibrio vulgaris RCH1 12868207 YP_005703146.1 CDS Deval_2364 NC_017310.1 2678166 2679614 D PFAM: Beta-ketoacyl synthase; KEGG: dde:Dde_2660 beta-ketoacyl synthase, putative; Beta-ketoacyl synthase 2678166..2679614 Desulfovibrio vulgaris RCH1 12868208 YP_005703147.1 CDS Deval_2365 NC_017310.1 2679614 2680207 D KEGG: sfu:Sfum_3713 hypothetical protein; hypothetical protein 2679614..2680207 Desulfovibrio vulgaris RCH1 12868209 YP_005703148.1 CDS Deval_2366 NC_017310.1 2680180 2681454 D KEGG: dde:Dde_2662 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 2680180..2681454 Desulfovibrio vulgaris RCH1 12868210 YP_005703149.1 CDS Deval_2367 NC_017310.1 2681436 2682176 D KEGG: dde:Dde_2663 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; dethiobiotin synthase 2681436..2682176 Desulfovibrio vulgaris RCH1 12868211 YP_005703150.1 CDS Deval_2368 NC_017310.1 2682332 2683597 R KEGG: dde:Dde_2664 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase complement(2682332..2683597) Desulfovibrio vulgaris RCH1 12868212 YP_005703151.1 CDS Deval_2369 NC_017310.1 2683597 2684301 R KEGG: dde:Dde_2665 hypothetical protein; transcriptional regulator TrmB complement(2683597..2684301) Desulfovibrio vulgaris RCH1 12868213 YP_005703152.1 CDS Deval_2370 NC_017310.1 2684901 2686139 D KEGG: dde:Dde_2667 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2684901..2686139 Desulfovibrio vulgaris RCH1 12868214 YP_005703153.1 CDS Deval_2371 NC_017310.1 2686209 2686634 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2686209..2686634 Desulfovibrio vulgaris RCH1 12868215 YP_005703154.1 CDS Deval_2372 NC_017310.1 2686734 2688386 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; Cache domain protein; KEGG: dde:Dde_0886 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase complement(2686734..2688386) Desulfovibrio vulgaris RCH1 12868216 YP_005703155.1 CDS Deval_2373 NC_017310.1 2688524 2690722 R KEGG: dde:Dde_2669 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein; ferrous iron transport protein B complement(2688524..2690722) Desulfovibrio vulgaris RCH1 12868217 YP_005703156.1 CDS Deval_2374 NC_017310.1 2690719 2690979 R PFAM: FeoA family protein; KEGG: dde:Dde_2670 ferrous iron transport protein A, putative; FeoA family protein complement(2690719..2690979) Desulfovibrio vulgaris RCH1 12868218 YP_005703157.1 CDS Deval_2375 NC_017310.1 2691060 2691215 R KEGG: dde:Dde_2672 hypothetical protein; hypothetical protein complement(2691060..2691215) Desulfovibrio vulgaris RCH1 12868219 YP_005703158.1 CDS Deval_2376 NC_017310.1 2691247 2691483 R PFAM: FeoA family protein; KEGG: dde:Dde_2673 ferrous ion transport protein, putative; FeoA family protein complement(2691247..2691483) Desulfovibrio vulgaris RCH1 12868220 YP_005703159.1 CDS Deval_2377 NC_017310.1 2691720 2692820 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1186 M20/M25/M40 family peptidase; peptidase M20 2691720..2692820 Desulfovibrio vulgaris RCH1 12868221 YP_005703160.1 CDS Deval_2378 NC_017310.1 2692817 2693782 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2692817..2693782 Desulfovibrio vulgaris RCH1 12868222 YP_005703161.1 CDS Deval_2379 NC_017310.1 2693877 2694527 D KEGG: dde:Dde_2674 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family two component transcriptional regulator 2693877..2694527 Desulfovibrio vulgaris RCH1 12868223 YP_005703162.1 CDS Deval_2380 NC_017310.1 2694854 2695543 D KEGG: tbd:Tbd_0987 multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver; response regulator receiver and Hpt phospho transfer protein 2694854..2695543 Desulfovibrio vulgaris RCH1 12868225 YP_005703163.1 CDS Deval_2381 NC_017310.1 2701866 2702495 D KEGG: dde:Dde_1288 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 2701866..2702495 Desulfovibrio vulgaris RCH1 12868231 YP_005703164.1 CDS Deval_2382 NC_017310.1 2702626 2706657 D KEGG: dds:Ddes_2361 ATP-binding region ATPase domain protein; PFAM: response regulator receiver; Diverse 7TM receptor extracellular region 2; SMART: response regulator receiver; ATP-binding region ATPase domain protein; multi-sensor hybrid histidine kinase 2702626..2706657 Desulfovibrio vulgaris RCH1 12868232 YP_005703165.1 CDS Deval_2383 NC_017310.1 2706654 2707094 D KEGG: cwo:Cwoe_5732 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2706654..2707094 Desulfovibrio vulgaris RCH1 12868233 YP_005703166.1 CDS Deval_2384 NC_017310.1 2707167 2707754 D PFAM: regulatory protein TetR; KEGG: dde:Dde_1283 TetR family transcriptional regulator; TetR family transcriptional regulator 2707167..2707754 Desulfovibrio vulgaris RCH1 12868234 YP_005703167.1 CDS Deval_2385 NC_017310.1 2707987 2708493 D KEGG: dde:Dde_2160 hypothetical protein; hypothetical protein 2707987..2708493 Desulfovibrio vulgaris RCH1 12868235 YP_005703168.1 CDS Deval_2386 NC_017310.1 2708955 2709887 D PFAM: Mg2 transporter protein CorA family protein; KEGG: dba:Dbac_0023 Mg2 transporter protein CorA family protein; Mg2 transporter protein CorA family protein 2708955..2709887 Desulfovibrio vulgaris RCH1 12868236 YP_005703169.1 CDS Deval_2387 NC_017310.1 2710126 2712006 D KEGG: dma:DMR_37860 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2710126..2712006 Desulfovibrio vulgaris RCH1 12868237 YP_005703170.1 CDS Deval_2388 NC_017310.1 2712305 2713987 R KEGG: dde:Dde_1281 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2712305..2713987) Desulfovibrio vulgaris RCH1 12868238 YP_005703171.1 CDS Deval_2389 NC_017310.1 2714179 2715564 R KEGG: dma:DMR_45890 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase complement(2714179..2715564) Desulfovibrio vulgaris RCH1 12868239 YP_005703172.1 CDS Deval_2390 NC_017310.1 2715533 2716213 R KEGG: rce:RC1_0686 two-component transcriptional regulator, putative; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator complement(2715533..2716213) Desulfovibrio vulgaris RCH1 12868240 YP_005703173.1 CDS Deval_2391 NC_017310.1 2716542 2718107 D PFAM: protein of unknown function DUF438; Domain of unknown function DUF1858; Hemerythrin HHE cation binding domain protein; KEGG: dds:Ddes_1165 protein of unknown function DUF438; hypothetical protein 2716542..2718107 Desulfovibrio vulgaris RCH1 12868241 YP_005703174.1 CDS Deval_2392 NC_017310.1 2718253 2718762 R KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein complement(2718253..2718762) Desulfovibrio vulgaris RCH1 12868242 YP_005703175.1 CDS Deval_2393 NC_017310.1 2718755 2719093 R KEGG: apb:SAR116_2345 hypothetical protein; hypothetical protein complement(2718755..2719093) Desulfovibrio vulgaris RCH1 12868243 YP_005703176.1 CDS Deval_2394 NC_017310.1 2719096 2720148 R KEGG: dde:Dde_1065 hypothetical protein; hypothetical protein complement(2719096..2720148) Desulfovibrio vulgaris RCH1 12868244 YP_005703177.1 CDS Deval_2395 NC_017310.1 2720264 2720737 R KEGG: dde:Dde_2543 hypothetical protein; hypothetical protein complement(2720264..2720737) Desulfovibrio vulgaris RCH1 12868245 YP_005703178.1 CDS Deval_2396 NC_017310.1 2720683 2721258 R KEGG: ecv:APECO1_4050 hypothetical protein; hypothetical protein complement(2720683..2721258) Desulfovibrio vulgaris RCH1 12868246 YP_005703179.1 CDS Deval_2398 NC_017310.1 2723354 2723908 R KEGG: dde:Dde_2546 hypothetical protein; hypothetical protein complement(2723354..2723908) Desulfovibrio vulgaris RCH1 12868248 YP_005703180.1 CDS Deval_2399 NC_017310.1 2723898 2724341 R KEGG: lif:LinJ29.0910 U3 small nucleolar ribonucleoprotein protein MPP10; hypothetical protein complement(2723898..2724341) Desulfovibrio vulgaris RCH1 12868249 YP_005703181.1 CDS Deval_2400 NC_017310.1 2724482 2724883 R KEGG: vap:Vapar_4258 histidine kinase; hypothetical protein complement(2724482..2724883) Desulfovibrio vulgaris RCH1 12868250 YP_005703182.1 CDS Deval_2401 NC_017310.1 2724910 2725824 R KEGG: dde:Dde_2547 hypothetical protein; hypothetical protein complement(2724910..2725824) Desulfovibrio vulgaris RCH1 12868251 YP_005703183.1 CDS Deval_2402 NC_017310.1 2725836 2726588 R KEGG: dde:Dde_2548 hypothetical protein; hypothetical protein complement(2725836..2726588) Desulfovibrio vulgaris RCH1 12868252 YP_005703184.1 CDS Deval_2403 NC_017310.1 2726581 2726988 R KEGG: dde:Dde_2549 hypothetical protein; hypothetical protein complement(2726581..2726988) Desulfovibrio vulgaris RCH1 12868253 YP_005703185.1 CDS Deval_2404 NC_017310.1 2726978 2728687 R KEGG: dde:Dde_2550 hypothetical protein; hypothetical protein complement(2726978..2728687) Desulfovibrio vulgaris RCH1 12868254 YP_005703186.1 CDS Deval_2405 NC_017310.1 2728687 2728905 R KEGG: dde:Dde_2551 hypothetical protein; hypothetical protein complement(2728687..2728905) Desulfovibrio vulgaris RCH1 12868255 YP_005703187.1 CDS Deval_2406 NC_017310.1 2729571 2730197 D KEGG: dma:DMR_15690 hypothetical protein; hypothetical protein 2729571..2730197 Desulfovibrio vulgaris RCH1 12868256 YP_005703188.1 CDS Deval_2407 NC_017310.1 2730213 2731058 D KEGG: lip:LI0482 flagellar motor protein MotA; flagellar motor protein MotA 2730213..2731058 Desulfovibrio vulgaris RCH1 12868257 YP_005703189.1 CDS Deval_2408 NC_017310.1 2731085 2731816 D PFAM: OmpA/MotB domain protein; KEGG: dds:Ddes_2180 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2731085..2731816 Desulfovibrio vulgaris RCH1 12868258 YP_005703190.1 CDS Deval_2409 NC_017310.1 2731850 2732608 R KEGG: dde:Dde_2557 hypothetical protein; hypothetical protein complement(2731850..2732608) Desulfovibrio vulgaris RCH1 12868259 YP_005703191.1 CDS Deval_2410 NC_017310.1 2732601 2734160 R KEGG: dde:Dde_2556 phage uncharacterized protein-like; phage protein complement(2732601..2734160) Desulfovibrio vulgaris RCH1 12868260 YP_005703192.1 CDS Deval_2411 NC_017310.1 2734696 2735085 D KEGG: saf:SULAZ_0562 hypothetical membrane protein; hypothetical protein 2734696..2735085 Desulfovibrio vulgaris RCH1 12868261 YP_005703193.1 CDS Deval_2412 NC_017310.1 2735132 2735698 D KEGG: tye:THEYE_A0371 peptidase, C39 family; hypothetical protein 2735132..2735698 Desulfovibrio vulgaris RCH1 12868262 YP_005703194.1 CDS Deval_2413 NC_017310.1 2735911 2736390 D PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: tye:THEYE_A0702 tetratricopeptide repeat domain protein; hypothetical protein 2735911..2736390 Desulfovibrio vulgaris RCH1 12868263 YP_005703195.1 CDS Deval_2414 NC_017310.1 2736993 2737841 D KEGG: alv:Alvin_1375 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2736993..2737841 Desulfovibrio vulgaris RCH1 12868264 YP_005703196.1 CDS Deval_2415 NC_017310.1 2737859 2740861 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: dba:Dbac_1409 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; multi-sensor hybrid histidine kinase 2737859..2740861 Desulfovibrio vulgaris RCH1 12868265 YP_005703197.1 CDS Deval_2416 NC_017310.1 2741233 2742453 D PFAM: sodium/calcium exchanger membrane region; KEGG: dds:Ddes_0594 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region 2741233..2742453 Desulfovibrio vulgaris RCH1 12868266 YP_005703198.1 CDS Deval_2417 NC_017310.1 2742786 2743514 D KEGG: dds:Ddes_0593 hypothetical protein; hypothetical protein 2742786..2743514 Desulfovibrio vulgaris RCH1 12868267 YP_005703199.1 CDS Deval_2418 NC_017310.1 2743543 2744775 D KEGG: dds:Ddes_1988 hypothetical protein; hypothetical protein 2743543..2744775 Desulfovibrio vulgaris RCH1 12868268 YP_005703200.1 CDS Deval_2419 NC_017310.1 2745058 2745870 D KEGG: dds:Ddes_1989 hypothetical protein; hypothetical protein 2745058..2745870 Desulfovibrio vulgaris RCH1 12868269 YP_005703201.1 CDS Deval_2420 NC_017310.1 2746366 2746713 D KEGG: mgr:MGG_03960 hypothetical protein; hypothetical protein 2746366..2746713 Desulfovibrio vulgaris RCH1 12868270 YP_005703202.1 CDS Deval_2421 NC_017310.1 2746710 2747345 D PFAM: Terminase small subunit; KEGG: dde:Dde_2568 hypothetical protein; terminase small subunit 2746710..2747345 Desulfovibrio vulgaris RCH1 12868271 YP_005703203.1 CDS Deval_2422 NC_017310.1 2747533 2747739 D KEGG: dde:Dde_2564 hypothetical protein; hypothetical protein 2747533..2747739 Desulfovibrio vulgaris RCH1 12868272 YP_005703204.1 CDS Deval_2423 NC_017310.1 2747782 2748159 R KEGG: rso:RSp0313 multidrug efflux system protein; hypothetical protein complement(2747782..2748159) Desulfovibrio vulgaris RCH1 12868273 YP_005703205.1 CDS Deval_2424 NC_017310.1 2748171 2748749 R KEGG: dde:Dde_1168 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein complement(2748171..2748749) Desulfovibrio vulgaris RCH1 12868274 YP_005703206.1 CDS Deval_2425 NC_017310.1 2748787 2749338 D manually curated; KEGG: dde:Dde_2572 hypothetical protein; hypothetical protein 2748787..2749338 Desulfovibrio vulgaris RCH1 12868275 YP_005703207.1 CDS Deval_2426 NC_017310.1 2749427 2750302 D KEGG: scl:sce5864 hypothetical protein; hypothetical protein 2749427..2750302 Desulfovibrio vulgaris RCH1 12868276 YP_005703208.1 CDS Deval_2427 NC_017310.1 2750543 2750839 R KEGG: dde:Dde_1153 hypothetical protein; hypothetical protein complement(2750543..2750839) Desulfovibrio vulgaris RCH1 12868277 YP_005703209.1 CDS Deval_2428 NC_017310.1 2750866 2751237 R KEGG: cre:CHLREDRAFT_179319 hypothetical protein; hypothetical protein complement(2750866..2751237) Desulfovibrio vulgaris RCH1 12868278 YP_005703210.1 CDS Deval_2429 NC_017310.1 2751303 2751740 R KEGG: dde:Dde_1156 hypothetical protein; hypothetical protein complement(2751303..2751740) Desulfovibrio vulgaris RCH1 12868279 YP_005703211.1 CDS Deval_2430 NC_017310.1 2751863 2752006 D hypothetical protein 2751863..2752006 Desulfovibrio vulgaris RCH1 12868280 YP_005703212.1 CDS Deval_2431 NC_017310.1 2752131 2752865 D PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: dde:Dde_1158 transcriptional regulator, putative; putative phage repressor 2752131..2752865 Desulfovibrio vulgaris RCH1 12868281 YP_005703213.1 CDS Deval_2432 NC_017310.1 2752944 2753153 D KEGG: api:100167325 similar to Rapgap1 CG34374-PD; hypothetical protein 2752944..2753153 Desulfovibrio vulgaris RCH1 12868282 YP_005703214.1 CDS Deval_2433 NC_017310.1 2753341 2754474 D PFAM: glycosyl transferase group 1; KEGG: drt:Dret_0291 glycosyl transferase group 1; group 1 glycosyl transferase 2753341..2754474 Desulfovibrio vulgaris RCH1 12868283 YP_005703215.1 CDS Deval_2434 NC_017310.1 2754597 2755766 R KEGG: bgl:bglu_2g20040 MFS efflux pump, membrane fusion protein, EmrA subfamily protein; hypothetical protein complement(2754597..2755766) Desulfovibrio vulgaris RCH1 12868284 YP_005703216.1 CDS Deval_2435 NC_017310.1 2755829 2757454 R KEGG: gem:GM21_2693 histidine kinase; PFAM: Cache type 2 domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; PAS domain containing protein; putative PAS/PAC sensor protein complement(2755829..2757454) Desulfovibrio vulgaris RCH1 12868285 YP_005703217.1 CDS Deval_2436 NC_017310.1 2757620 2758708 R KEGG: dde:Dde_2853 hypothetical protein; hypothetical protein complement(2757620..2758708) Desulfovibrio vulgaris RCH1 12868286 YP_005703218.1 CDS Deval_2437 NC_017310.1 2758931 2759233 D KEGG: dde:Dde_1149 hypothetical protein; hypothetical protein 2758931..2759233 Desulfovibrio vulgaris RCH1 12868287 YP_005703219.1 CDS Deval_2438 NC_017310.1 2759586 2760326 D KEGG: dds:Ddes_0999 putative lipoprotein; hypothetical protein 2759586..2760326 Desulfovibrio vulgaris RCH1 12868288 YP_005703220.1 CDS Deval_2439 NC_017310.1 2760348 2761082 D KEGG: dds:Ddes_0999 putative lipoprotein; putative lipoprotein 2760348..2761082 Desulfovibrio vulgaris RCH1 12868289 YP_005703221.1 CDS Deval_2440 NC_017310.1 2761148 2761591 D PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: dba:Dbac_3447 threonyl/alanyl tRNA synthetase SAD; threonyl/alanyl tRNA synthetase SAD 2761148..2761591 Desulfovibrio vulgaris RCH1 12868290 YP_005703222.1 CDS Deval_2441 NC_017310.1 2761772 2763685 D PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; KEGG: dde:Dde_1147 heat shock protein 90; Heat shock protein Hsp90-like protein 2761772..2763685 Desulfovibrio vulgaris RCH1 12868291 YP_005703223.1 CDS Deval_2442 NC_017310.1 2764084 2764755 R KEGG: dsa:Desal_1386 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(2764084..2764755) Desulfovibrio vulgaris RCH1 12868292 YP_005703224.1 CDS Deval_2443 NC_017310.1 2764899 2766299 R PFAM: Na+/H+ antiporter NhaC-like; KEGG: dde:Dde_2580 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC-like protein complement(2764899..2766299) Desulfovibrio vulgaris RCH1 12868293 YP_005703225.1 CDS Deval_2444 NC_017310.1 2766362 2767360 R KEGG: dsa:Desal_1391 pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; D-cysteine desulfhydrase family pyridoxal phosphate-dependent protein complement(2766362..2767360) Desulfovibrio vulgaris RCH1 12868294 YP_005703226.1 CDS Deval_2445 NC_017310.1 2767410 2767799 R KEGG: dde:Dde_2582 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP complement(2767410..2767799) Desulfovibrio vulgaris RCH1 12868295 YP_005703227.1 CDS Deval_2446 NC_017310.1 2768829 2769380 R KEGG: dsa:Desal_1854 hypothetical protein; hypothetical protein complement(2768829..2769380) Desulfovibrio vulgaris RCH1 12868296 YP_005703228.1 CDS Deval_2447 NC_017310.1 2769956 2770537 R KEGG: dsa:Desal_1854 hypothetical protein; hypothetical protein complement(2769956..2770537) Desulfovibrio vulgaris RCH1 12868297 YP_005703229.1 CDS Deval_2448 NC_017310.1 2771494 2772819 D KEGG: dds:Ddes_0284 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; serine-type D-Ala-D-Ala carboxypeptidase 2771494..2772819 Desulfovibrio vulgaris RCH1 12868298 YP_005703230.1 CDS Deval_2449 NC_017310.1 2773177 2773539 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mxa:MXAN_6868 putative 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl-tetrahydropterin synthase complement(2773177..2773539) Desulfovibrio vulgaris RCH1 12868299 YP_005703231.1 CDS Deval_2450 NC_017310.1 2773802 2774452 R PFAM: Radical SAM domain protein; KEGG: xau:Xaut_3190 hypothetical protein; radical SAM protein complement(2773802..2774452) Desulfovibrio vulgaris RCH1 12868300 YP_005703232.1 CDS Deval_2451 NC_017310.1 2774449 2775177 R KEGG: gdj:Gdia_3394 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like; exsB protein complement(2774449..2775177) Desulfovibrio vulgaris RCH1 12868301 YP_005703233.1 CDS Deval_2452 NC_017310.1 2775555 2777120 D KEGG: pna:Pnap_4517 bilirubin oxidase; bilirubin oxidase 2775555..2777120 Desulfovibrio vulgaris RCH1 12868302 YP_005703234.1 CDS Deval_2453 NC_017310.1 2777294 2778031 D PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein; family 3 extracellular solute-binding protein 2777294..2778031 Desulfovibrio vulgaris RCH1 12868303 YP_005703235.1 CDS Deval_2454 NC_017310.1 2778056 2778532 R KEGG: dma:DMR_36210 hypothetical protein; hypothetical protein complement(2778056..2778532) Desulfovibrio vulgaris RCH1 12868304 YP_005703236.1 CDS Deval_2455 NC_017310.1 2778535 2779401 R KEGG: dds:Ddes_0784 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2778535..2779401) Desulfovibrio vulgaris RCH1 12868305 YP_005703237.1 CDS Deval_2456 NC_017310.1 2779433 2780356 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0783 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2779433..2780356) Desulfovibrio vulgaris RCH1 12868306 YP_005703238.1 CDS Deval_2457 NC_017310.1 2780353 2781225 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0782 phosphate transporter permease PstC; binding-protein-dependent transport system inner membrane protein complement(2780353..2781225) Desulfovibrio vulgaris RCH1 12868307 YP_005703239.1 CDS Deval_2458 NC_017310.1 2781225 2782103 R TIGRFAM: phosphate binding protein; KEGG: dds:Ddes_0781 phosphate binding protein; phosphate binding protein complement(2781225..2782103) Desulfovibrio vulgaris RCH1 12868308 YP_005703240.1 CDS Deval_2459 NC_017310.1 2782549 2783916 D KEGG: dde:Dde_0981 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; UDP-N-acetylglucosamine pyrophosphorylase 2782549..2783916 Desulfovibrio vulgaris RCH1 12868309 YP_005703241.1 CDS Deval_2460 NC_017310.1 2783948 2784184 D KEGG: dde:Dde_0980 hypothetical protein; hypothetical protein 2783948..2784184 Desulfovibrio vulgaris RCH1 12868310 YP_005703242.1 CDS Deval_2461 NC_017310.1 2784204 2784467 D KEGG: dde:Dde_0979 hypothetical protein; hypothetical protein 2784204..2784467 Desulfovibrio vulgaris RCH1 12868311 YP_005703243.1 CDS Deval_2462 NC_017310.1 2784859 2786418 D TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; KEGG: dde:Dde_0978 phosphodiesterase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; metal dependent phosphohydrolase 2784859..2786418 Desulfovibrio vulgaris RCH1 12868313 YP_005703244.1 CDS Deval_2463 NC_017310.1 2786516 2787139 D PFAM: Uncharacterised protein family UPF0126; KEGG: gsu:GSU1208 hypothetical protein; hypothetical protein 2786516..2787139 Desulfovibrio vulgaris RCH1 12868314 YP_005703245.1 CDS Deval_2464 NC_017310.1 2787126 2787716 D KEGG: bfu:BC1G_11953 hypothetical protein; hypothetical protein 2787126..2787716 Desulfovibrio vulgaris RCH1 12868315 YP_005703246.1 CDS Deval_2465 NC_017310.1 2787695 2788864 D PFAM: FAD dependent oxidoreductase; KEGG: tpe:Tpen_1127 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2787695..2788864 Desulfovibrio vulgaris RCH1 12868316 YP_005703247.1 CDS Deval_2466 NC_017310.1 2788866 2789585 D KEGG: bfa:Bfae_21340 succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2788866..2789585 Desulfovibrio vulgaris RCH1 12868317 YP_005703248.1 CDS Deval_2467 NC_017310.1 2789807 2790559 R KEGG: dde:Dde_0977 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; LuxR family two component transcriptional regulator complement(2789807..2790559) Desulfovibrio vulgaris RCH1 12868318 YP_005703249.1 CDS Deval_2468 NC_017310.1 2790741 2791007 D KEGG: dde:Dde_0976 hypothetical protein; hypothetical protein 2790741..2791007 Desulfovibrio vulgaris RCH1 12868319 YP_005703250.1 CDS Deval_2469 NC_017310.1 2791135 2792598 D KEGG: dma:DMR_28620 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; response regulator receiver sensor signal transduction histidine kinase 2791135..2792598 Desulfovibrio vulgaris RCH1 12868320 YP_005703251.1 CDS Deval_2470 NC_017310.1 2792595 2793797 D PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA-specific-like; pseudouridine synthase 2792595..2793797 Desulfovibrio vulgaris RCH1 12868321 YP_005703252.1 CDS Deval_2471 NC_017310.1 2793811 2796828 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_34360 putative two-component hybrid sensor and regulator; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein; GAF domain protein; multi-sensor hybrid histidine kinase complement(2793811..2796828) Desulfovibrio vulgaris RCH1 12868322 YP_005703253.1 CDS Deval_2472 NC_017310.1 2797167 2797613 D KEGG: dde:Dde_3667 flavodoxin, short chain; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; flavodoxin 2797167..2797613 Desulfovibrio vulgaris RCH1 12868323 YP_005703254.1 CDS Deval_2473 NC_017310.1 2797614 2797772 R hypothetical protein complement(2797614..2797772) Desulfovibrio vulgaris RCH1 12868324 YP_005703255.1 CDS Deval_2474 NC_017310.1 2797735 2797917 R hypothetical protein complement(2797735..2797917) Desulfovibrio vulgaris RCH1 12868325 YP_005703256.1 CDS Deval_2475 NC_017310.1 2798350 2798991 R PFAM: SNARE associated Golgi protein; KEGG: dds:Ddes_1987 SNARE associated Golgi protein; hypothetical protein complement(2798350..2798991) Desulfovibrio vulgaris RCH1 12868326 YP_005703257.1 CDS Deval_2476 NC_017310.1 2799458 2799631 D KEGG: rec:RHECIAT_CH0003295 hypothetical protein; hypothetical protein 2799458..2799631 Desulfovibrio vulgaris RCH1 12868327 YP_005703258.1 CDS Deval_2477 NC_017310.1 2799776 2801326 D KEGG: L-lactate permease family protein, putative; L-lactate permease family protein, putative 2799776..2801326 Desulfovibrio vulgaris RCH1 12868328 YP_005703259.1 CDS Deval_2478 NC_017310.1 2801475 2802155 R PFAM: type IV pilus assembly PilZ; KEGG: dma:DMR_17480 hypothetical protein; type IV pilus assembly PilZ complement(2801475..2802155) Desulfovibrio vulgaris RCH1 12868329 YP_005703260.1 CDS Deval_2479 NC_017310.1 2802723 2803505 R PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dds:Ddes_0819 putative phage repressor; putative phage repressor complement(2802723..2803505) Desulfovibrio vulgaris RCH1 12868330 YP_005703261.1 CDS Deval_2480 NC_017310.1 2803764 2804222 D KEGG: dde:Dde_3347 hypothetical protein; hypothetical protein 2803764..2804222 Desulfovibrio vulgaris RCH1 12868331 YP_005703262.1 CDS Deval_2481 NC_017310.1 2804197 2804439 D KEGG: dde:Dde_3348 hypothetical protein; hypothetical protein 2804197..2804439 Desulfovibrio vulgaris RCH1 12868332 YP_005703263.1 CDS Deval_2482 NC_017310.1 2804457 2806652 D PFAM: Transposase-like Mu ; Integrase catalytic region; MuA-transposase/repressor protein CI DNA-binding; KEGG: slt:Slit_0191 transposase-like Mu; transposase-like Mu 2804457..2806652 Desulfovibrio vulgaris RCH1 12868333 YP_005703264.1 CDS Deval_2483 NC_017310.1 2806661 2807446 D KEGG: slt:Slit_0192 bacteriophage DNA transposition B protein; bacteriophage DNA transposition B protein 2806661..2807446 Desulfovibrio vulgaris RCH1 12868334 YP_005703265.1 CDS Deval_2484 NC_017310.1 2807449 2808036 D KEGG: slt:Slit_0193 hypothetical protein; hypothetical protein 2807449..2808036 Desulfovibrio vulgaris RCH1 12868335 YP_005703266.1 CDS Deval_2485 NC_017310.1 2808029 2808358 D KEGG: slt:Slit_0194 regulatory protein, LacI; regulatory protein, LacI 2808029..2808358 Desulfovibrio vulgaris RCH1 12868336 YP_005703267.1 CDS Deval_2486 NC_017310.1 2808361 2808843 D KEGG: art:Arth_4449 heavy metal translocating P-type ATPase; hypothetical protein 2808361..2808843 Desulfovibrio vulgaris RCH1 12868337 YP_005703268.1 CDS Deval_2487 NC_017310.1 2808853 2809089 D KEGG: rfr:Rfer_1869 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator 2808853..2809089 Desulfovibrio vulgaris RCH1 12868338 YP_005703269.1 CDS Deval_2488 NC_017310.1 2809175 2809414 D KEGG: dsy:DSY2191 hypothetical protein; hypothetical protein 2809175..2809414 Desulfovibrio vulgaris RCH1 12868339 YP_005703270.1 CDS Deval_2489 NC_017310.1 2809496 2809930 D KEGG: dde:Dde_3357 hypothetical protein; hypothetical protein 2809496..2809930 Desulfovibrio vulgaris RCH1 12868340 YP_005703271.1 CDS Deval_2490 NC_017310.1 2809939 2810355 D KEGG: pag:PLES_15631 hypothetical protein; hypothetical protein 2809939..2810355 Desulfovibrio vulgaris RCH1 12868341 YP_005703272.1 CDS Deval_2491 NC_017310.1 2810364 2810840 D PFAM: Mor transcription activator domain protein; KEGG: lhk:LHK_01158 putative bacteriophage DNA transposition protein B; Mor transcription activator domain-containing protein 2810364..2810840 Desulfovibrio vulgaris RCH1 12868342 YP_005703273.1 CDS Deval_2492 NC_017310.1 2810853 2811191 D KEGG: slt:Slit_0215 hypothetical protein; hypothetical protein 2810853..2811191 Desulfovibrio vulgaris RCH1 12868343 YP_005703274.1 CDS Deval_2493 NC_017310.1 2811304 2811666 D KEGG: bcj:BCAS0534 holin; Lipoprotein, putative 2811304..2811666 Desulfovibrio vulgaris RCH1 12868344 YP_005703275.1 CDS Deval_2494 NC_017310.1 2811666 2812313 D PFAM: Lytic transglycosylase catalytic; KEGG: lip:LIC036 putative lytic murein transglycosylase precursor; lytic transglycosylase 2811666..2812313 Desulfovibrio vulgaris RCH1 12868345 YP_005703276.1 CDS Deval_2495 NC_017310.1 2812306 2812725 D KEGG: hip:CGSHiEE_01085 cell envelope integrity inner membrane protein TolA; hypothetical protein 2812306..2812725 Desulfovibrio vulgaris RCH1 12868346 YP_005703277.1 CDS Deval_2496 NC_017310.1 2812679 2812972 D KEGG: dra:DR_A0292 hypothetical protein; hypothetical protein 2812679..2812972 Desulfovibrio vulgaris RCH1 12868347 YP_005703278.1 CDS Deval_2497 NC_017310.1 2812976 2813257 D KEGG: lhk:LHK_01154 hypothetical protein; hypothetical protein 2812976..2813257 Desulfovibrio vulgaris RCH1 12868348 YP_005703279.1 CDS Deval_2498 NC_017310.1 2813244 2813459 D KEGG: bvi:Bcep1808_1310 hypothetical protein; hypothetical protein 2813244..2813459 Desulfovibrio vulgaris RCH1 12868349 YP_005703280.1 CDS Deval_2499 NC_017310.1 2813461 2813979 D PFAM: protein of unknown function DUF1804; KEGG: slt:Slit_0222 protein of unknown function DUF1804; hypothetical protein 2813461..2813979 Desulfovibrio vulgaris RCH1 12868350 YP_005703281.1 CDS Deval_2500 NC_017310.1 2813976 2815652 D TIGRFAM: phage uncharacterized protein; KEGG: pag:PLES_15721 phage uncharacterized protein; phage protein 2813976..2815652 Desulfovibrio vulgaris RCH1 12868351 YP_005703282.1 CDS Deval_2501 NC_017310.1 2815639 2817357 D PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein; hypothetical protein 2815639..2817357 Desulfovibrio vulgaris RCH1 12868352 YP_005703283.1 CDS Deval_2502 NC_017310.1 2817360 2818610 D KEGG: bcj:BCAS0526 phage Mu F virion morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; phage head morphogenesis protein 2817360..2818610 Desulfovibrio vulgaris RCH1 12868353 YP_005703284.1 CDS Deval_2503 NC_017310.1 2818775 2819263 D TIGRFAM: phage virion morphogenesis protein; KEGG: tgr:Tgr7_0435 phage virion morphogenesis protein; phage virion morphogenesis protein 2818775..2819263 Desulfovibrio vulgaris RCH1 12868354 YP_005703285.1 CDS Deval_2504 NC_017310.1 2819970 2821151 D PFAM: Mu-like prophage I protein; KEGG: bvi:Bcep1808_1303 hypothetical protein; Mu-like prophage I protein 2819970..2821151 Desulfovibrio vulgaris RCH1 12868355 YP_005703286.1 CDS Deval_2505 NC_017310.1 2821152 2822081 D KEGG: lip:LIC067 hypothetical protein; hypothetical protein 2821152..2822081 Desulfovibrio vulgaris RCH1 12868356 YP_005703287.1 CDS Deval_2506 NC_017310.1 2822093 2822422 D KEGG: kra:Krad_1551 DNA-binding protein; hypothetical protein 2822093..2822422 Desulfovibrio vulgaris RCH1 12868357 YP_005703288.1 CDS Deval_2507 NC_017310.1 2822422 2822853 D PFAM: protein of unknown function DUF1320; KEGG: slt:Slit_0232 protein of unknown function DUF1320; hypothetical protein 2822422..2822853 Desulfovibrio vulgaris RCH1 12868358 YP_005703289.1 CDS Deval_2508 NC_017310.1 2822850 2823479 D PFAM: Domain of unknown function DUF1834; KEGG: slt:Slit_0233 domain of unknown function DUF1834; hypothetical protein 2822850..2823479 Desulfovibrio vulgaris RCH1 12868359 YP_005703290.1 CDS Deval_2509 NC_017310.1 2823482 2823667 D KEGG: hsm:HSM_0675 hypothetical protein; hypothetical protein 2823482..2823667 Desulfovibrio vulgaris RCH1 12868360 YP_005703291.1 CDS Deval_2510 NC_017310.1 2823654 2825075 D KEGG: lhk:LHK_01152 probable phage sheath protein; putative phage sheath protein 2823654..2825075 Desulfovibrio vulgaris RCH1 12868361 YP_005703292.1 CDS Deval_2511 NC_017310.1 2825154 2825981 D KEGG: vvu:VV1_0379 hypothetical protein; hypothetical protein 2825154..2825981 Desulfovibrio vulgaris RCH1 12868362 YP_005703293.1 CDS Deval_2512 NC_017310.1 2826117 2826491 D KEGG: lhk:LHK_01151 hypothetical protein; hypothetical protein 2826117..2826491 Desulfovibrio vulgaris RCH1 12868363 YP_005703294.1 CDS Deval_2513 NC_017310.1 2826689 2827018 D KEGG: lip:LIC072 hypothetical protein; hypothetical protein 2826689..2827018 Desulfovibrio vulgaris RCH1 12868364 YP_005703295.1 CDS Deval_2514 NC_017310.1 2827177 2829117 D PFAM: tail tape measure protein TP901 core region; KEGG: bvi:Bcep1808_1293 TP901 family phage tail tape measure protein; tail tape measure protein TP901 core region 2827177..2829117 Desulfovibrio vulgaris RCH1 12868365 YP_005703296.1 CDS Deval_2515 NC_017310.1 2829137 2830477 D PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein; DNA circulation family protein 2829137..2830477 Desulfovibrio vulgaris RCH1 12868366 YP_005703297.1 CDS Deval_2516 NC_017310.1 2830467 2831621 D KEGG: bbr:BB3615 putative phage tail protein; putative phage tail protein 2830467..2831621 Desulfovibrio vulgaris RCH1 12868367 YP_005703298.1 CDS Deval_2517 NC_017310.1 2831618 2832244 D KEGG: lhk:LHK_01147 probable bacteriophage base plate protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; phage baseplate assembly protein V 2831618..2832244 Desulfovibrio vulgaris RCH1 12868368 YP_005703299.1 CDS Deval_2518 NC_017310.1 2832705 2833061 D PFAM: GP46 family protein; KEGG: bbr:BB3613 hypothetical protein; GP46 family protein 2832705..2833061 Desulfovibrio vulgaris RCH1 12868369 YP_005703300.1 CDS Deval_2519 NC_017310.1 2833071 2834132 D PFAM: Baseplate J family protein; KEGG: lhk:LHK_01145 probable phage FluMu protein GP47; baseplate J family protein 2833071..2834132 Desulfovibrio vulgaris RCH1 12868370 YP_005703301.1 CDS Deval_2520 NC_017310.1 2834129 2834722 D KEGG: lip:LIC089 hypothetical protein; hypothetical protein 2834129..2834722 Desulfovibrio vulgaris RCH1 12868371 YP_005703302.1 CDS Deval_2521 NC_017310.1 2834806 2835696 D KEGG: ypb:YPTS_1377 tail collar domain-containing protein; tail collar domain-containing protein 2834806..2835696 Desulfovibrio vulgaris RCH1 12868372 YP_005703303.1 CDS Deval_2522 NC_017310.1 2835706 2836245 D KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 2835706..2836245 Desulfovibrio vulgaris RCH1 12868373 YP_005703304.1 CDS Deval_2523 NC_017310.1 2836546 2836746 D manually curated; KEGG: dde:Dde_3395 hypothetical protein; hypothetical protein 2836546..2836746 Desulfovibrio vulgaris RCH1 12868374 YP_005703305.1 CDS Deval_2524 NC_017310.1 2836719 2837468 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dma:DMR_29400 hypothetical protein; DNA methylase N-4/N-6 domain-containing protein 2836719..2837468 Desulfovibrio vulgaris RCH1 12868375 YP_005703306.1 CDS Deval_2525 NC_017310.1 2838170 2839240 D PFAM: Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; KEGG: dds:Ddes_0938 domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; hypothetical protein 2838170..2839240 Desulfovibrio vulgaris RCH1 12868377 YP_005703307.1 CDS Deval_2526 NC_017310.1 2839351 2840649 D PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0972 phenylacetate-CoA ligase; AMP-dependent synthetase and ligase 2839351..2840649 Desulfovibrio vulgaris RCH1 12868378 YP_005703308.1 CDS Deval_2527 NC_017310.1 2840831 2841340 D PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein; hypothetical protein 2840831..2841340 Desulfovibrio vulgaris RCH1 12868379 YP_005703309.1 CDS Deval_2528 NC_017310.1 2841674 2842438 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_0974 RNA methyltransferase; tRNA/rRNA methyltransferase SpoU 2841674..2842438 Desulfovibrio vulgaris RCH1 12868380 YP_005703310.1 CDS Deval_2529 NC_017310.1 2842640 2845081 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; KEGG: dsa:Desal_1083 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2842640..2845081 Desulfovibrio vulgaris RCH1 12868381 YP_005703311.1 CDS Deval_2530 NC_017310.1 2845389 2848577 D PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dba:Dbac_1886 pyruvate phosphate dikinase PEP/pyruvate-binding; pyruvate phosphate dikinase PEP/pyruvate-binding protein 2845389..2848577 Desulfovibrio vulgaris RCH1 12868382 YP_005703312.1 CDS Deval_2531 NC_017310.1 2849055 2849780 R KEGG: dds:Ddes_2118 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2849055..2849780) Desulfovibrio vulgaris RCH1 12868383 YP_005703313.1 CDS Deval_2532 NC_017310.1 2849780 2850547 R KEGG: dsa:Desal_2946 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2849780..2850547) Desulfovibrio vulgaris RCH1 12868384 YP_005703314.1 CDS Deval_2533 NC_017310.1 2850557 2851633 R PFAM: inner-membrane translocator; KEGG: dsa:Desal_2945 inner-membrane translocator; inner-membrane translocator complement(2850557..2851633) Desulfovibrio vulgaris RCH1 12868385 YP_005703315.1 CDS Deval_2534 NC_017310.1 2851656 2852576 R PFAM: inner-membrane translocator; KEGG: dsa:Desal_2944 inner-membrane translocator; inner-membrane translocator complement(2851656..2852576) Desulfovibrio vulgaris RCH1 12868386 YP_005703316.1 CDS Deval_2535 NC_017310.1 2852686 2853843 R PFAM: Extracellular ligand-binding receptor; KEGG: dds:Ddes_2114 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2852686..2853843) Desulfovibrio vulgaris RCH1 12868387 YP_005703317.1 CDS Deval_2536 NC_017310.1 2854221 2855165 D KEGG: dba:Dbac_1615 hypothetical protein; hypothetical protein 2854221..2855165 Desulfovibrio vulgaris RCH1 12868388 YP_005703318.1 CDS Deval_2537 NC_017310.1 2855583 2858627 D KEGG: lip:LI0012 hypothetical protein; hypothetical protein 2855583..2858627 Desulfovibrio vulgaris RCH1 12868389 YP_005703319.1 CDS Deval_2538 NC_017310.1 2858759 2859547 R KEGG: dde:Dde_0801 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase complement(2858759..2859547) Desulfovibrio vulgaris RCH1 12868390 YP_005703320.1 CDS Deval_2539 NC_017310.1 2859550 2861421 R TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE complement(2859550..2861421) Desulfovibrio vulgaris RCH1 12868391 YP_005703321.1 CDS Deval_2540 NC_017310.1 2861629 2861901 D KEGG: gdi:GDI_3005 putative flavoproteins oxidoreductases; hypothetical protein 2861629..2861901 Desulfovibrio vulgaris RCH1 12868392 YP_005703322.1 CDS Deval_2541 NC_017310.1 2861868 2863037 R KEGG: dma:DMR_11840 putative cobalt-precorrin-6A synthase; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; cobalamin biosynthesis protein CbiD complement(2861868..2863037) Desulfovibrio vulgaris RCH1 12868393 YP_005703323.1 CDS Deval_2542 NC_017310.1 2863207 2863707 D PFAM: methylamine utilisation MauE; KEGG: dde:Dde_0805 hypothetical protein; methylamine utilization MauE 2863207..2863707 Desulfovibrio vulgaris RCH1 12868394 YP_005703324.1 CDS Deval_2543 NC_017310.1 2863718 2864239 D KEGG: dde:Dde_0806 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 2863718..2864239 Desulfovibrio vulgaris RCH1 12868395 YP_005703325.1 CDS Deval_2544 NC_017310.1 2864376 2865176 D KEGG: drt:Dret_1057 C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein; C_GCAxxG_C_C family protein 2864376..2865176 Desulfovibrio vulgaris RCH1 12868396 YP_005703326.1 CDS Deval_2545 NC_017310.1 2865442 2866419 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aeh:Mlg_2472 alcohol dehydrogenase; alcohol dehydrogenase complement(2865442..2866419) Desulfovibrio vulgaris RCH1 12868397 YP_005703327.1 CDS Deval_2546 NC_017310.1 2866696 2867538 R KEGG: dde:Dde_0799 hypothetical protein; hypothetical protein complement(2866696..2867538) Desulfovibrio vulgaris RCH1 12868398 YP_005703328.1 CDS Deval_2547 NC_017310.1 2867985 2869103 D PFAM: Radical SAM domain protein; KEGG: dde:Dde_0798 hypothetical protein; radical SAM protein 2867985..2869103 Desulfovibrio vulgaris RCH1 12868399 YP_005703329.1 CDS Deval_2548 NC_017310.1 2869100 2870227 D PFAM: Radical SAM domain protein; KEGG: dde:Dde_0797 hypothetical protein; radical SAM protein 2869100..2870227 Desulfovibrio vulgaris RCH1 12868400 YP_005703330.1 CDS Deval_2549 NC_017310.1 2870289 2871131 D PFAM: protein of unknown function DUF178; KEGG: dds:Ddes_1281 protein of unknown function DUF178; hypothetical protein 2870289..2871131 Desulfovibrio vulgaris RCH1 12868401 YP_005703331.1 CDS Deval_2551 NC_017310.1 2872239 2872421 R KEGG: cwo:Cwoe_0407 major facilitator superfamily MFS_1; hypothetical protein complement(2872239..2872421) Desulfovibrio vulgaris RCH1 12868403 YP_005703332.1 CDS Deval_2552 NC_017310.1 2872489 2873448 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0791 hypothetical protein; hypothetical protein complement(2872489..2873448) Desulfovibrio vulgaris RCH1 12868404 YP_005703333.1 CDS Deval_2553 NC_017310.1 2873617 2876043 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0788 TPR repeat-containing protein; SMART: Tetratricopeptide repeat; diguanylate cyclase complement(2873617..2876043) Desulfovibrio vulgaris RCH1 12868405 YP_005703334.1 CDS Deval_2554 NC_017310.1 2876332 2876850 D PFAM: nitroreductase; KEGG: drt:Dret_2187 nitroreductase; nitroreductase 2876332..2876850 Desulfovibrio vulgaris RCH1 12868406 YP_005703335.1 CDS Deval_2555 NC_017310.1 2876850 2877476 D KEGG: dde:Dde_0786 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2876850..2877476 Desulfovibrio vulgaris RCH1 12868407 YP_005703336.1 CDS Deval_2556 NC_017310.1 2877564 2877731 D hypothetical protein 2877564..2877731 Desulfovibrio vulgaris RCH1 12868408 YP_005703337.1 CDS Deval_2557 NC_017310.1 2877728 2878342 D KEGG: dde:Dde_0785 iron-sulfur flavoprotein, putative; iron-sulfur flavoprotein 2877728..2878342 Desulfovibrio vulgaris RCH1 12868409 YP_005703338.1 CDS Deval_2558 NC_017310.1 2878434 2879330 D PFAM: phosphoribosyltransferase; KEGG: lip:LI1111 amidophosphoribosyltransferases; phosphoribosyltransferase 2878434..2879330 Desulfovibrio vulgaris RCH1 12868410 YP_005703339.1 CDS Deval_2559 NC_017310.1 2879753 2880535 D PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dps:DP0758 hypothetical protein; nickel transport complex transmembrane protein NikM 2879753..2880535 Desulfovibrio vulgaris RCH1 12868411 YP_005703340.1 CDS Deval_2560 NC_017310.1 2880645 2881043 D KEGG: dde:Dde_0774 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2880645..2881043 Desulfovibrio vulgaris RCH1 12868412 YP_005703341.1 CDS Deval_2561 NC_017310.1 2881085 2882020 D PFAM: import inner membrane translocase subunit Tim44; KEGG: dds:Ddes_1736 import inner membrane translocase subunit Tim44; import inner membrane translocase subunit Tim44 2881085..2882020 Desulfovibrio vulgaris RCH1 12868413 YP_005703342.1 CDS Deval_2562 NC_017310.1 2882280 2883602 R PFAM: protein of unknown function DUF111; KEGG: dde:Dde_0766 hypothetical protein; hypothetical protein complement(2882280..2883602) Desulfovibrio vulgaris RCH1 12868414 YP_005703343.1 CDS Deval_2563 NC_017310.1 2883841 2884707 R PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dba:Dbac_2862 protein of unknown function DUF161; hypothetical protein complement(2883841..2884707) Desulfovibrio vulgaris RCH1 12868415 YP_005703344.1 CDS Deval_2564 NC_017310.1 2884834 2885517 D KEGG: dde:Dde_0765 CBS; PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; SMART: CBS domain containing protein; hypothetical protein 2884834..2885517 Desulfovibrio vulgaris RCH1 12868416 YP_005703345.1 CDS Deval_2565 NC_017310.1 2886594 2886911 D TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; KEGG: dds:Ddes_1917 sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; TusE/DsrC/DsvC family sulfur relay protein 2886594..2886911 Desulfovibrio vulgaris RCH1 12868417 YP_005703346.1 CDS Deval_2566 NC_017310.1 2887440 2887712 R KEGG: dde:Dde_0761 hypothetical protein; hypothetical protein complement(2887440..2887712) Desulfovibrio vulgaris RCH1 12868418 YP_005703347.1 CDS Deval_2567 NC_017310.1 2888095 2889480 R PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 putative ABC transporter solute-binding protein; extracellular solute-binding protein complement(2888095..2889480) Desulfovibrio vulgaris RCH1 12868419 YP_005703348.1 CDS Deval_2568 NC_017310.1 2889622 2890494 R PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dol:Dole_2543 hypothetical protein; hypothetical protein complement(2889622..2890494) Desulfovibrio vulgaris RCH1 12868420 YP_005703349.1 CDS Deval_2569 NC_017310.1 2890891 2891412 R KEGG: cms:CMS_0580 DeoR family transcriptional regulator; hypothetical protein complement(2890891..2891412) Desulfovibrio vulgaris RCH1 12868421 YP_005703350.1 CDS Deval_2570 NC_017310.1 2891689 2892489 R PFAM: protein of unknown function DUF81; KEGG: drt:Dret_0158 protein of unknown function DUF81; hypothetical protein complement(2891689..2892489) Desulfovibrio vulgaris RCH1 12868422 YP_005703351.1 CDS Deval_2571 NC_017310.1 2892496 2893521 R KEGG: dde:Dde_0750 FMN-dependent family dehydrogenase; manually curated; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase complement(2892496..2893521) Desulfovibrio vulgaris RCH1 12868423 YP_005703352.1 CDS Deval_2572 NC_017310.1 2893644 2894372 R KEGG: dde:Dde_0749 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH; GntR family transcriptional regulator complement(2893644..2894372) Desulfovibrio vulgaris RCH1 12868424 YP_005703353.1 CDS Deval_2573 NC_017310.1 2894613 2895071 R KEGG: dde:Dde_0748 hypothetical protein; hypothetical protein complement(2894613..2895071) Desulfovibrio vulgaris RCH1 12868425 YP_005703354.1 CDS Deval_2574 NC_017310.1 2895089 2895451 R KEGG: dde:Dde_0747 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator complement(2895089..2895451) Desulfovibrio vulgaris RCH1 12868426 YP_005703355.1 CDS Deval_2575 NC_017310.1 2895860 2896411 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: dde:Dde_0237 Gpr1/Fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 2895860..2896411 Desulfovibrio vulgaris RCH1 12868427 YP_005703356.1 CDS Deval_2576 NC_017310.1 2896984 2897763 D KEGG: dde:Dde_0580 cytochrome c family protein; cytochrome c family protein 2896984..2897763 Desulfovibrio vulgaris RCH1 12868428 YP_005703357.1 CDS Deval_2577 NC_017310.1 2897777 2898982 D KEGG: dds:Ddes_1238 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; respiratory-chain NADH dehydrogenase domain 51 kDa subunit 2897777..2898982 Desulfovibrio vulgaris RCH1 12868429 YP_005703358.1 CDS Deval_2578 NC_017310.1 2899120 2900076 D KEGG: dds:Ddes_1239 NQR2 and RnfD family protein; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; RnfABCDGE type electron transport complex subunit D 2899120..2900076 Desulfovibrio vulgaris RCH1 12868430 YP_005703359.1 CDS Deval_2579 NC_017310.1 2900079 2900654 D PFAM: FMN-binding domain protein; KEGG: dds:Ddes_1240 FMN-binding domain protein; FMN-binding domain-containing protein 2900079..2900654 Desulfovibrio vulgaris RCH1 12868431 YP_005703360.1 CDS Deval_2580 NC_017310.1 2900666 2901337 D KEGG: dde:Dde_0584 electron transport complex RsxE subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; RnfABCDGE type electron transport complex subunit E 2900666..2901337 Desulfovibrio vulgaris RCH1 12868432 YP_005703361.1 CDS Deval_2581 NC_017310.1 2901347 2901922 D KEGG: dds:Ddes_1242 electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; RnfABCDGE type electron transport complex subunit A 2901347..2901922 Desulfovibrio vulgaris RCH1 12868433 YP_005703362.1 CDS Deval_2582 NC_017310.1 2901992 2902879 D KEGG: dds:Ddes_1243 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; RnfABCDGE type electron transport complex subunit B 2901992..2902879 Desulfovibrio vulgaris RCH1 12868434 YP_005703363.1 CDS Deval_2583 NC_017310.1 2902876 2903886 D PFAM: ApbE family lipoprotein; KEGG: dde:Dde_0587 hypotehtical protein; ApbE family lipoprotein 2902876..2903886 Desulfovibrio vulgaris RCH1 12868435 YP_005703364.1 CDS Deval_2584 NC_017310.1 2903981 2904397 R KEGG: dma:DMR_28770 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator complement(2903981..2904397) Desulfovibrio vulgaris RCH1 12868436 YP_005703365.1 CDS Deval_2585 NC_017310.1 2904405 2906306 R KEGG: dma:DMR_28780 putative cation translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating P-type ATPase complement(2904405..2906306) Desulfovibrio vulgaris RCH1 12868437 YP_005703366.1 CDS Deval_2586 NC_017310.1 2906558 2907823 D PFAM: PAS fold-3 domain protein; KEGG: dde:Dde_1612 hypothetical protein; PAS fold-3 domain-containing protein 2906558..2907823 Desulfovibrio vulgaris RCH1 12868438 YP_005703367.1 CDS Deval_2587 NC_017310.1 2908071 2908766 D KEGG: dde:Dde_1614 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; regulatory protein GntR HTH 2908071..2908766 Desulfovibrio vulgaris RCH1 12868439 YP_005703368.1 CDS Deval_2588 NC_017310.1 2908756 2908977 D KEGG: dsa:Desal_0358 hypothetical protein; hypothetical protein 2908756..2908977 Desulfovibrio vulgaris RCH1 12868440 YP_005703369.1 CDS Deval_2589 NC_017310.1 2909046 2910455 D KEGG: dde:Dde_1615 hypothetical protein; hypothetical protein 2909046..2910455 Desulfovibrio vulgaris RCH1 12868441 YP_005703370.1 CDS Deval_2590 NC_017310.1 2910472 2911629 D KEGG: dde:Dde_1616 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2910472..2911629 Desulfovibrio vulgaris RCH1 12868442 YP_005703371.1 CDS Deval_2591 NC_017310.1 2911676 2913622 D KEGG: dde:Dde_1617 G3E family GTPase-like protein; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SMART: cobalamin synthesis CobW domain protein; cobalamin synthesis protein P47K 2911676..2913622 Desulfovibrio vulgaris RCH1 12868443 YP_005703372.1 CDS Deval_2592 NC_017310.1 2913609 2914358 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: drt:Dret_0916 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2913609..2914358 Desulfovibrio vulgaris RCH1 12868444 YP_005703373.1 CDS Deval_2593 NC_017310.1 2914342 2914788 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: drt:Dret_0915 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2914342..2914788 Desulfovibrio vulgaris RCH1 12868445 YP_005703374.1 CDS Deval_2594 NC_017310.1 2914785 2915294 D TIGRFAM: TonB family protein; KEGG: dsa:Desal_0352 TonB family protein; TonB family protein 2914785..2915294 Desulfovibrio vulgaris RCH1 12868446 YP_005703375.1 CDS Deval_2595 NC_017310.1 2915505 2915939 R PFAM: Cytochrome c, class III, conserved region; KEGG: dds:Ddes_0558 cytochrome c class III; cytochrome c, class III, conserved region complement(2915505..2915939) Desulfovibrio vulgaris RCH1 12868447 YP_005703376.1 CDS Deval_2596 NC_017310.1 2915954 2916901 R KEGG: dds:Ddes_0557 formate dehydrogenase accessory protein; formate dehydrogenase accessory protein complement(2915954..2916901) Desulfovibrio vulgaris RCH1 12868448 YP_005703377.1 CDS Deval_2597 NC_017310.1 2916975 2917634 R KEGG: dds:Ddes_0556 formate dehydrogenase, beta subunit, putative; formate dehydrogenase subunit beta complement(2916975..2917634) Desulfovibrio vulgaris RCH1 12868449 YP_005703378.1 CDS Deval_2598 NC_017310.1 2917686 2920724 R manually curated; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; manually curated; Contains selenocysteine; KEGG: dds:Ddes_0555 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(2917686..2920724) Desulfovibrio vulgaris RCH1 12868450 YP_005703379.1 CDS Deval_2599 NC_017310.1 2921517 2923145 R KEGG: gur:Gura_3497 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(2921517..2923145) Desulfovibrio vulgaris RCH1 12868451 YP_005703380.1 CDS Deval_2600 NC_017310.1 2923142 2926354 R KEGG: ccs:CCNA_00850 cation/multidrug efflux pump acrB2; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(2923142..2926354) Desulfovibrio vulgaris RCH1 12868452 YP_005703381.1 CDS Deval_2601 NC_017310.1 2926370 2927623 R KEGG: azo:azo0244 membrane fusion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(2926370..2927623) Desulfovibrio vulgaris RCH1 12868453 YP_005703382.1 CDS Deval_2602 NC_017310.1 2928080 2928688 D PFAM: regulatory protein TetR; KEGG: sjp:SJA_P1-01580 TetR-family transcriptional regulator; regulatory protein TetR 2928080..2928688 Desulfovibrio vulgaris RCH1 12868454 YP_005703383.1 CDS Deval_2603 NC_017310.1 2928876 2929712 R PFAM: amidohydrolase 2; KEGG: dde:Dde_1278 amidohydrolase family protein; amidohydrolase 2 complement(2928876..2929712) Desulfovibrio vulgaris RCH1 12868455 YP_005703384.1 CDS Deval_2604 NC_017310.1 2930398 2931408 D KEGG: dde:Dde_1275 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP 2930398..2931408 Desulfovibrio vulgaris RCH1 12868456 YP_005703385.1 CDS Deval_2605 NC_017310.1 2931489 2933393 D KEGG: dde:Dde_1274 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; TRAP dicarboxylate transporter subunit DctM 2931489..2933393 Desulfovibrio vulgaris RCH1 12868457 YP_005703386.1 CDS Deval_2606 NC_017310.1 2933499 2935985 D PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dde:Dde_1273 formate C-acetyltransferase; pyruvate formate-lyase PFL 2933499..2935985 Desulfovibrio vulgaris RCH1 12868458 YP_005703387.1 CDS Deval_2607 NC_017310.1 2936162 2937085 D TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: dde:Dde_1272 radical-activating enzyme; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family 2936162..2937085 Desulfovibrio vulgaris RCH1 12868459 YP_005703388.1 CDS Deval_2608 NC_017310.1 2937525 2938946 D TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_1270 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 2937525..2938946 Desulfovibrio vulgaris RCH1 12868460 YP_005703389.1 CDS Deval_2609 NC_017310.1 2939415 2940788 D PFAM: integrase family protein; KEGG: dma:DMR_24670 site-specific recombinase; integrase family protein 2939415..2940788 Desulfovibrio vulgaris RCH1 12868461 YP_005703390.1 CDS Deval_2610 NC_017310.1 2940790 2941032 R KEGG: sfu:Sfum_2425 hypothetical protein; hypothetical protein complement(2940790..2941032) Desulfovibrio vulgaris RCH1 12868462 YP_005703391.1 CDS Deval_2611 NC_017310.1 2941097 2941462 R KEGG: drt:Dret_0360 death-on-curing family protein; hypothetical protein complement(2941097..2941462) Desulfovibrio vulgaris RCH1 12868463 YP_005703392.1 CDS Deval_2612 NC_017310.1 2941547 2941759 R KEGG: hypothetical protein; hypothetical protein complement(2941547..2941759) Desulfovibrio vulgaris RCH1 12868464 YP_005703393.1 CDS Deval_2613 NC_017310.1 2941845 2942039 R hypothetical protein complement(2941845..2942039) Desulfovibrio vulgaris RCH1 12868465 YP_005703394.1 CDS Deval_2614 NC_017310.1 2942026 2942487 R KEGG: dsa:Desal_1649 transcriptional regulator CII, putative; transcriptional regulator CII, putative complement(2942026..2942487) Desulfovibrio vulgaris RCH1 12868466 YP_005703395.1 CDS Deval_2615 NC_017310.1 2942645 2942974 D KEGG: cfa:403809 ribosome binding protein 1 homolog 180kDa (dog); hypothetical protein 2942645..2942974 Desulfovibrio vulgaris RCH1 12868467 YP_005703396.1 CDS Deval_2616 NC_017310.1 2942964 2943302 R KEGG: ccs:CCNA_03084 hypothetical protein; hypothetical protein complement(2942964..2943302) Desulfovibrio vulgaris RCH1 12868468 YP_005703397.1 CDS Deval_2617 NC_017310.1 2943372 2943644 R SMART: helix-turn-helix domain protein; KEGG: dma:DMR_24900 hypothetical protein; helix-turn-helix domain-containing protein complement(2943372..2943644) Desulfovibrio vulgaris RCH1 12868469 YP_005703398.1 CDS Deval_2618 NC_017310.1 2943762 2944187 D KEGG: bqu:BQ09040 hypothetical protein; hypothetical protein 2943762..2944187 Desulfovibrio vulgaris RCH1 12868470 YP_005703399.1 CDS Deval_2619 NC_017310.1 2944300 2945373 D PFAM: protein of unknown function DUF450; KEGG: dsa:Desal_2153 protein of unknown function DUF450; hypothetical protein 2944300..2945373 Desulfovibrio vulgaris RCH1 12868471 YP_005703400.1 CDS Deval_2620 NC_017310.1 2945445 2946782 D SMART: metal-dependent phosphohydrolase HD region; KEGG: metal dependent phosphohydrolase; metal dependent phosphohydrolase 2945445..2946782 Desulfovibrio vulgaris RCH1 12868472 YP_005703401.1 CDS Deval_2621 NC_017310.1 2946783 2947307 D KEGG: geo:Geob_0580 hypothetical protein; hypothetical protein 2946783..2947307 Desulfovibrio vulgaris RCH1 12868473 YP_005703402.1 CDS Deval_2622 NC_017310.1 2947416 2948117 R KEGG: vcj:VCD_000855 hypothetical protein; hypothetical protein complement(2947416..2948117) Desulfovibrio vulgaris RCH1 12868474 YP_005703403.1 CDS Deval_2623 NC_017310.1 2948117 2949316 R KEGG: rsh:Rsph17029_3386 type II restriction endonuclease, putative; PFAM: Restriction endonuclease EcoRII; type II site-specific deoxyribonuclease complement(2948117..2949316) Desulfovibrio vulgaris RCH1 12868475 YP_005703404.1 CDS Deval_2624 NC_017310.1 2949456 2950532 D PFAM: C-5 cytosine-specific DNA methylase; manually curated; KEGG: mmr:Mmar10_3057 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 2949456..2950532 Desulfovibrio vulgaris RCH1 12868476 YP_005703405.1 CDS Deval_2625 NC_017310.1 2950968 2951831 D KEGG: sma:SAV_2155 3-hydroxyacyl-CoA dehydrogenase; hypothetical protein 2950968..2951831 Desulfovibrio vulgaris RCH1 12868477 YP_005703406.1 CDS Deval_2626 NC_017310.1 2951839 2952267 D PFAM: histidine triad (HIT) protein; KEGG: pca:Pcar_0296 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad (HIT) protein 2951839..2952267 Desulfovibrio vulgaris RCH1 12868478 YP_005703407.1 CDS Deval_2627 NC_017310.1 2952573 2952902 R manually curated; KEGG: dma:DMR_24910 hypothetical protein; hypothetical protein complement(2952573..2952902) Desulfovibrio vulgaris RCH1 12868479 YP_005703408.1 CDS Deval_2628 NC_017310.1 2952914 2953453 R KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein complement(2952914..2953453) Desulfovibrio vulgaris RCH1 12868480 YP_005703409.1 CDS Deval_2629 NC_017310.1 2953463 2954278 R KEGG: pfl:PFL_1226 tail fibre protein, putative; tail fiber protein complement(2953463..2954278) Desulfovibrio vulgaris RCH1 12868481 YP_005703410.1 CDS Deval_2630 NC_017310.1 2954271 2954897 R KEGG: bph:Bphy_1869 hypothetical protein; hypothetical protein complement(2954271..2954897) Desulfovibrio vulgaris RCH1 12868482 YP_005703411.1 CDS Deval_2631 NC_017310.1 2954906 2955967 R PFAM: Baseplate J family protein; KEGG: pol:Bpro_3733 baseplate J-like protein; baseplate J family protein complement(2954906..2955967) Desulfovibrio vulgaris RCH1 12868483 YP_005703412.1 CDS Deval_2632 NC_017310.1 2955976 2956452 R PFAM: GP46 family protein; KEGG: xbo:XBJ1_2641 Mu-like prophage FluMu protein; GP46 family protein complement(2955976..2956452) Desulfovibrio vulgaris RCH1 12868484 YP_005703413.1 CDS Deval_2633 NC_017310.1 2956454 2957092 R KEGG: pen:PSEEN4139 Mu-like phage assembly protein GP45; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; phage baseplate assembly protein V complement(2956454..2957092) Desulfovibrio vulgaris RCH1 12868485 YP_005703414.1 CDS Deval_2634 NC_017310.1 2957094 2958227 R KEGG: pca:Pcar_1817 Mu-like prophage tail protein gpP; Mu-like prophage tail protein gpP complement(2957094..2958227) Desulfovibrio vulgaris RCH1 12868486 YP_005703415.1 CDS Deval_2635 NC_017310.1 2958220 2958357 R hypothetical protein complement(2958220..2958357) Desulfovibrio vulgaris RCH1 12868487 YP_005703416.1 CDS Deval_2636 NC_017310.1 2958350 2959549 R PFAM: DNA circulation family protein; KEGG: pol:Bpro_3737 DNA circulation-like; DNA circulation family protein complement(2958350..2959549) Desulfovibrio vulgaris RCH1 12868488 YP_005703417.1 CDS Deval_2637 NC_017310.1 2959558 2961132 R KEGG: nis:NIS_0476 hypothetical protein; hypothetical protein complement(2959558..2961132) Desulfovibrio vulgaris RCH1 12868489 YP_005703418.1 CDS Deval_2638 NC_017310.1 2961248 2961508 R KEGG: bpt:Bpet4420 hypothetical protein; hypothetical protein complement(2961248..2961508) Desulfovibrio vulgaris RCH1 12868490 YP_005703419.1 CDS Deval_2639 NC_017310.1 2961508 2961873 R PFAM: Tail tube protein, bacteriophage; KEGG: bph:Bphy_1877 hypothetical protein; Tail tube protein, bacteriophage complement(2961508..2961873) Desulfovibrio vulgaris RCH1 12868491 YP_005703420.1 CDS Deval_2640 NC_017310.1 2961923 2963386 R KEGG: pol:Bpro_3741 bacteriophage Mu tail sheath; bacteriophage Mu tail sheath complement(2961923..2963386) Desulfovibrio vulgaris RCH1 12868492 YP_005703421.1 CDS Deval_2641 NC_017310.1 2963390 2963581 R KEGG: ecy:ECSE_2580 hypothetical protein; hypothetical protein complement(2963390..2963581) Desulfovibrio vulgaris RCH1 12868493 YP_005703422.1 CDS Deval_2642 NC_017310.1 2963565 2964122 R KEGG: ank:AnaeK_3110 hypothetical protein; hypothetical protein complement(2963565..2964122) Desulfovibrio vulgaris RCH1 12868494 YP_005703423.1 CDS Deval_2643 NC_017310.1 2964119 2964445 R KEGG: met:M446_3276 molybdenum cofactor synthesis domain-containing protein; hypothetical protein complement(2964119..2964445) Desulfovibrio vulgaris RCH1 12868495 YP_005703424.1 CDS Deval_2644 NC_017310.1 2964442 2965035 R KEGG: drm:Dred_1209 hypothetical protein; hypothetical protein complement(2964442..2965035) Desulfovibrio vulgaris RCH1 12868496 YP_005703425.1 CDS Deval_2645 NC_017310.1 2965038 2965205 R hypothetical protein complement(2965038..2965205) Desulfovibrio vulgaris RCH1 12868497 YP_005703426.1 CDS Deval_2646 NC_017310.1 2965198 2965608 R KEGG: hba:Hbal_0455 hypothetical protein; hypothetical protein complement(2965198..2965608) Desulfovibrio vulgaris RCH1 12868498 YP_005703427.1 CDS Deval_2647 NC_017310.1 2965626 2966195 R PFAM: protein of unknown function DUF847; Peptidoglycan binding domain; KEGG: dds:Ddes_0723 protein of unknown function DUF847; hypothetical protein complement(2965626..2966195) Desulfovibrio vulgaris RCH1 12868499 YP_005703428.1 CDS Deval_2648 NC_017310.1 2966195 2966683 R KEGG: dma:DMR_25100 hypothetical membrane protein; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; toxin secretion/phage lysis holin complement(2966195..2966683) Desulfovibrio vulgaris RCH1 12868500 YP_005703429.1 CDS Deval_2649 NC_017310.1 2966686 2967033 R KEGG: spu:581224 similar to mp86; hypothetical protein complement(2966686..2967033) Desulfovibrio vulgaris RCH1 12868501 YP_005703430.1 CDS Deval_2650 NC_017310.1 2967042 2968046 R KEGG: lhk:LHK_01651 putative capsid protein of prophage; hypothetical protein complement(2967042..2968046) Desulfovibrio vulgaris RCH1 12868502 YP_005703431.1 CDS Deval_2651 NC_017310.1 2968058 2968441 R KEGG: xal:XALc_0211 hypothetical phage-related protein; hypothetical protein complement(2968058..2968441) Desulfovibrio vulgaris RCH1 12868503 YP_005703432.1 CDS Deval_2652 NC_017310.1 2968451 2969770 R PFAM: peptidase S49; KEGG: lhk:LHK_01653 periplasmic serine proteases (ClpP class); peptidase S49 complement(2968451..2969770) Desulfovibrio vulgaris RCH1 12868504 YP_005703433.1 CDS Deval_2653 NC_017310.1 2969754 2971454 R KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family complement(2969754..2971454) Desulfovibrio vulgaris RCH1 12868505 YP_005703434.1 CDS Deval_2654 NC_017310.1 2971458 2971733 R KEGG: cbt:CLH_1728 hypothetical protein; hypothetical protein complement(2971458..2971733) Desulfovibrio vulgaris RCH1 12868506 YP_005703435.1 CDS Deval_2655 NC_017310.1 2971960 2972388 R KEGG: dma:DMR_14730 hypothetical protein; hypothetical protein complement(2971960..2972388) Desulfovibrio vulgaris RCH1 12868507 YP_005703436.1 CDS Deval_2656 NC_017310.1 2972381 2972599 R TIGRFAM: DNA binding domain protein, excisionase family; KEGG: aoe:Clos_0602 DNA binding domain-containing protein; excisionase family DNA binding domain-containing protein complement(2972381..2972599) Desulfovibrio vulgaris RCH1 12868508 YP_005703437.1 CDS Deval_2657 NC_017310.1 2972596 2974608 R PFAM: terminase GpA; KEGG: dsa:Desal_2143 terminase GpA; terminase GpA complement(2972596..2974608) Desulfovibrio vulgaris RCH1 12868509 YP_005703438.1 CDS Deval_2658 NC_017310.1 2974574 2975296 R KEGG: dps:DP1575 hypothetical protein; hypothetical protein complement(2974574..2975296) Desulfovibrio vulgaris RCH1 12868510 YP_005703439.1 CDS Deval_2659 NC_017310.1 2975289 2976647 R KEGG: rsh:Rsph17029_0653 nuclease; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; DNA methylase N-4/N-6 domain-containing protein complement(2975289..2976647) Desulfovibrio vulgaris RCH1 12868511 YP_005703440.1 CDS Deval_2660 NC_017310.1 2976774 2978330 R KEGG: dal:Dalk_0267 P4 alpha zinc-binding domain protein; PFAM: P4 alpha zinc-binding domain protein; DNA primase catalytic core domain; SMART: P4 alpha zinc-binding domain protein; P4 alpha zinc-binding domain-containing protein complement(2976774..2978330) Desulfovibrio vulgaris RCH1 12868512 YP_005703441.1 CDS Deval_2661 NC_017310.1 2978597 2980282 R KEGG: dma:DMR_41960 hypothetical protein; TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; phage/plasmid primase, P4 family complement(2978597..2980282) Desulfovibrio vulgaris RCH1 12868513 YP_005703442.1 CDS Deval_2662 NC_017310.1 2981351 2982847 D KEGG: dde:Dde_3058 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2981351..2982847 Desulfovibrio vulgaris RCH1 12868515 YP_005703443.1 CDS Deval_2663 NC_017310.1 2982959 2984428 D TIGRFAM: L-seryl-tRNA selenium transferase; KEGG: dde:Dde_3059 selenocysteine synthase; PFAM: Pyridoxal phosphate-dependent transferase; L-seryl-tRNA selenium transferase 2982959..2984428 Desulfovibrio vulgaris RCH1 12868516 YP_005703444.1 CDS Deval_2664 NC_017310.1 2984487 2985890 D PFAM: peptidase M18 aminopeptidase I; KEGG: dde:Dde_3061 putative aminopeptidase 1; peptidase M18 aminopeptidase I 2984487..2985890 Desulfovibrio vulgaris RCH1 12868517 YP_005703445.1 CDS Deval_2665 NC_017310.1 2986061 2987254 D PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3062 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2986061..2987254 Desulfovibrio vulgaris RCH1 12868518 YP_005703446.1 CDS Deval_2666 NC_017310.1 2987361 2988200 D KEGG: dsa:Desal_3271 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2987361..2988200 Desulfovibrio vulgaris RCH1 12868519 YP_005703447.1 CDS Deval_2667 NC_017310.1 2988451 2989419 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dsa:Desal_3273 protein of unknown function DUF6 transmembrane; hypothetical protein 2988451..2989419 Desulfovibrio vulgaris RCH1 12868520 YP_005703448.1 CDS Deval_2668 NC_017310.1 2989601 2990428 R KEGG: dde:Dde_2953 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(2989601..2990428) Desulfovibrio vulgaris RCH1 12868521 YP_005703449.1 CDS Deval_2669 NC_017310.1 2990425 2990973 R PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein; BioY protein complement(2990425..2990973) Desulfovibrio vulgaris RCH1 12868522 YP_005703450.1 CDS Deval_2670 NC_017310.1 2990992 2991870 D KEGG: dde:Dde_2955 hypothetical protein; hypothetical protein 2990992..2991870 Desulfovibrio vulgaris RCH1 12868523 YP_005703451.1 CDS Deval_2671 NC_017310.1 2991889 2992308 D PFAM: NikR nickel binding; KEGG: dde:Dde_2956 nickel responsive regulator; CopG family transcriptional regulator 2991889..2992308 Desulfovibrio vulgaris RCH1 12868524 YP_005703452.1 CDS Deval_2672 NC_017310.1 2992313 2993113 D KEGG: dde:Dde_2957 putative GTP cyclohydrolase; PFAM: protein of unknown function DUF198; GTP cyclohydrolase I 2992313..2993113 Desulfovibrio vulgaris RCH1 12868525 YP_005703453.1 CDS Deval_2673 NC_017310.1 2993161 2993538 D PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dma:DMR_31700 putative flagellar basal-body rod protein; hypothetical protein 2993161..2993538 Desulfovibrio vulgaris RCH1 12868526 YP_005703454.1 CDS Deval_2674 NC_017310.1 2993816 2994865 D KEGG: dde:Dde_2959 Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; Fis family sigma-54 specific transcriptional regulator 2993816..2994865 Desulfovibrio vulgaris RCH1 12868527 YP_005703455.1 CDS Deval_2675 NC_017310.1 2995195 2998407 D PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2960 TPR repeat-containing protein; hypothetical protein 2995195..2998407 Desulfovibrio vulgaris RCH1 12868528 YP_005703456.1 CDS Deval_2676 NC_017310.1 2998750 2999739 D PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein; hypothetical protein 2998750..2999739 Desulfovibrio vulgaris RCH1 12868529 YP_005703457.1 CDS Deval_2677 NC_017310.1 2999870 3000871 D KEGG: mma:MM_1125 hypothetical protein; hypothetical protein 2999870..3000871 Desulfovibrio vulgaris RCH1 12868530 YP_005703458.1 CDS Deval_2678 NC_017310.1 3001256 3002098 R KEGG: dde:Dde_2962 hypothetical protein; hypothetical protein complement(3001256..3002098) Desulfovibrio vulgaris RCH1 12868531 YP_005703459.1 CDS Deval_2679 NC_017310.1 3002314 3003513 D PFAM: amidohydrolase; KEGG: dde:Dde_2963 amidohydrolase family protein; amidohydrolase 3002314..3003513 Desulfovibrio vulgaris RCH1 12868532 YP_005703460.1 CDS Deval_2680 NC_017310.1 3003527 3004480 D TIGRFAM: aspartate carbamoyltransferase; KEGG: dds:Ddes_1871 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase 3003527..3004480 Desulfovibrio vulgaris RCH1 12868533 YP_005703461.1 CDS Deval_2681 NC_017310.1 3004480 3005748 D KEGG: dde:Dde_2965 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type 3004480..3005748 Desulfovibrio vulgaris RCH1 12868534 YP_005703462.1 CDS Deval_2682 NC_017310.1 3006066 3007394 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein; metal dependent phosphohydrolase 3006066..3007394 Desulfovibrio vulgaris RCH1 12868535 YP_005703463.1 CDS Deval_2683 NC_017310.1 3007868 3008962 D KEGG: dds:Ddes_0445 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical SAM enzyme, Cfr family 3007868..3008962 Desulfovibrio vulgaris RCH1 12868536 YP_005703464.1 CDS Deval_2684 NC_017310.1 3009256 3010434 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(3009256..3010434) Desulfovibrio vulgaris RCH1 12868537 YP_005703465.1 CDS Deval_2685 NC_017310.1 3010713 3012200 R KEGG: dma:DMR_28930 UmuC protein; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase complement(3010713..3012200) Desulfovibrio vulgaris RCH1 12868538 YP_005703466.1 CDS Deval_2686 NC_017310.1 3012311 3012916 R PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: syw:SYNW1044 putative SOS mutagenesis protein UmuD; Peptidase S24/S26A/S26B complement(3012311..3012916) Desulfovibrio vulgaris RCH1 12868539 YP_005703467.1 CDS Deval_2687 NC_017310.1 3013100 3013852 D KEGG: dde:Dde_2975 hypothetical protein; hypothetical protein 3013100..3013852 Desulfovibrio vulgaris RCH1 12868540 YP_005703468.1 CDS Deval_2688 NC_017310.1 3013956 3014369 D KEGG: dsa:Desal_3516 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 3013956..3014369 Desulfovibrio vulgaris RCH1 12868541 YP_005703469.1 CDS Deval_2689 NC_017310.1 3014382 3014987 D PFAM: protein of unknown function DUF204; KEGG: dde:Dde_2978 hypothetical protein; hypothetical protein 3014382..3014987 Desulfovibrio vulgaris RCH1 12868542 YP_005703470.1 CDS Deval_2690 NC_017310.1 3015188 3015949 R KEGG: dde:Dde_2981 hemolysin A; TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; hemolysin A complement(3015188..3015949) Desulfovibrio vulgaris RCH1 12868543 YP_005703471.1 CDS Deval_2691 NC_017310.1 3016151 3016366 D KEGG: dde:Dde_2982 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; 50S ribosomal protein L31 3016151..3016366 Desulfovibrio vulgaris RCH1 12868544 YP_005703472.1 CDS Deval_2692 NC_017310.1 3016481 3017488 D KEGG: dde:Dde_2983 putative lipoprotein; manually curated; PFAM: protein of unknown function DUF1385; hypothetical protein 3016481..3017488 Desulfovibrio vulgaris RCH1 12868545 YP_005703473.1 CDS Deval_2693 NC_017310.1 3017495 3018568 D KEGG: dde:Dde_2984 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 1 3017495..3018568 Desulfovibrio vulgaris RCH1 12868546 YP_005703474.1 CDS Deval_2694 NC_017310.1 3019268 3020155 D KEGG: dde:Dde_2985 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase 3019268..3020155 Desulfovibrio vulgaris RCH1 12868547 YP_005703475.1 CDS Deval_2695 NC_017310.1 3020363 3021289 D KEGG: dde:Dde_2986 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 3020363..3021289 Desulfovibrio vulgaris RCH1 12868548 YP_005703476.1 CDS Deval_2696 NC_017310.1 3022637 3023830 D KEGG: dde:Dde_2989 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; translation elongation factor Tu 3022637..3023830 Desulfovibrio vulgaris RCH1 12868553 YP_005703477.1 CDS Deval_2697 NC_017310.1 3023835 3023984 D KEGG: dds:Ddes_1629 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; 50S ribosomal protein L33 3023835..3023984 Desulfovibrio vulgaris RCH1 12868554 YP_005703478.1 CDS Deval_2698 NC_017310.1 3024110 3024361 D KEGG: dde:Dde_2990 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; Preprotein translocase subunit SecE 3024110..3024361 Desulfovibrio vulgaris RCH1 12868556 YP_005703479.1 CDS Deval_2699 NC_017310.1 3024373 3024924 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: dde:Dde_2991 transcription antitermination protein NusG; SMART: NGN domain-containing protein; KOW domain protein; NusG antitermination factor 3024373..3024924 Desulfovibrio vulgaris RCH1 12868557 YP_005703480.1 CDS Deval_2700 NC_017310.1 3024981 3025403 D TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: dds:Ddes_1632 ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 3024981..3025403 Desulfovibrio vulgaris RCH1 12868558 YP_005703481.1 CDS Deval_2701 NC_017310.1 3025513 3026220 D KEGG: dde:Dde_2993 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; 50S ribosomal protein L1 3025513..3026220 Desulfovibrio vulgaris RCH1 12868559 YP_005703482.1 CDS Deval_2702 NC_017310.1 3026389 3026910 D PFAM: ribosomal protein L10; KEGG: dde:Dde_2994 50S ribosomal protein L10; 50S ribosomal protein L10 3026389..3026910 Desulfovibrio vulgaris RCH1 12868560 YP_005703483.1 CDS Deval_2703 NC_017310.1 3026964 3027347 D KEGG: dds:Ddes_1635 ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 3026964..3027347 Desulfovibrio vulgaris RCH1 12868561 YP_005703484.1 CDS Deval_2704 NC_017310.1 3027813 3031931 D KEGG: dde:Dde_2997 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; DNA-directed RNA polymerase subunit beta 3027813..3031931 Desulfovibrio vulgaris RCH1 12868562 YP_005703485.1 CDS Deval_2705 NC_017310.1 3032039 3036196 D TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 3032039..3036196 Desulfovibrio vulgaris RCH1 12868563 YP_005703486.1 CDS Deval_2706 NC_017310.1 3036740 3037345 D KEGG: dde:Dde_2999 hypothetical protein; hypothetical protein 3036740..3037345 Desulfovibrio vulgaris RCH1 12868564 YP_005703487.1 CDS Deval_2707 NC_017310.1 3037359 3039560 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 3037359..3039560 Desulfovibrio vulgaris RCH1 12868565 YP_005703488.1 CDS Deval_2708 NC_017310.1 3039594 3040520 D PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_3001 hypothetical protein; hypothetical protein 3039594..3040520 Desulfovibrio vulgaris RCH1 12868566 YP_005703489.1 CDS Deval_2709 NC_017310.1 3040532 3041908 D TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; PAS fold-4 domain protein; KEGG: dde:Dde_3002 putative PAS/PAC sensor protein; SMART: response regulator receiver; PAS domain containing protein; metal-dependent phosphohydrolase HD region; putative PAS/PAC sensor protein 3040532..3041908 Desulfovibrio vulgaris RCH1 12868567 YP_005703490.1 CDS Deval_2710 NC_017310.1 3041912 3043330 D KEGG: dde:Dde_3003 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 3041912..3043330 Desulfovibrio vulgaris RCH1 12868568 YP_005703491.1 CDS Deval_2711 NC_017310.1 3043488 3044240 D TIGRFAM: phosphoglycerate mutase 1 family; KEGG: dde:Dde_3004 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3043488..3044240 Desulfovibrio vulgaris RCH1 12868569 YP_005703492.1 CDS Deval_2712 NC_017310.1 3044441 3045796 D PFAM: response regulator receiver; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein; response regulator receiver 3044441..3045796 Desulfovibrio vulgaris RCH1 12868570 YP_005703493.1 CDS Deval_2713 NC_017310.1 3046042 3047214 D PFAM: protein of unknown function DUF39; KEGG: dde:Dde_3007 hypothetical protein; hypothetical protein 3046042..3047214 Desulfovibrio vulgaris RCH1 12868571 YP_005703494.1 CDS Deval_2714 NC_017310.1 3047240 3048127 D KEGG: dde:Dde_3008 hypothetical protein; hypothetical protein 3047240..3048127 Desulfovibrio vulgaris RCH1 12868572 YP_005703495.1 CDS Deval_2715 NC_017310.1 3048414 3048524 D KEGG: dds:Ddes_0093 hypothetical protein; hypothetical protein 3048414..3048524 Desulfovibrio vulgaris RCH1 12868573 YP_005703496.1 CDS Deval_2716 NC_017310.1 3048656 3048955 D KEGG: drt:Dret_2465 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; FmdB family regulatory protein 3048656..3048955 Desulfovibrio vulgaris RCH1 12868574 YP_005703497.1 CDS Deval_2717 NC_017310.1 3049055 3050347 D KEGG: dde:Dde_3011 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; adenylosuccinate lyase 3049055..3050347 Desulfovibrio vulgaris RCH1 12868575 YP_005703498.1 CDS Deval_2718 NC_017310.1 3050359 3050919 D TIGRFAM: orotate phosphoribosyltransferase; KEGG: dds:Ddes_0096 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 3050359..3050919 Desulfovibrio vulgaris RCH1 12868576 YP_005703499.1 CDS Deval_2719 NC_017310.1 3050979 3052268 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 3050979..3052268 Desulfovibrio vulgaris RCH1 12868577 YP_005703500.1 CDS Deval_2720 NC_017310.1 3052265 3053164 D KEGG: lip:LI1000 hypothetical protein; hypothetical protein 3052265..3053164 Desulfovibrio vulgaris RCH1 12868578 YP_005703501.1 CDS Deval_2721 NC_017310.1 3053555 3053797 R KEGG: dde:Dde_3015 hypothetical protein; hypothetical protein complement(3053555..3053797) Desulfovibrio vulgaris RCH1 12868579 YP_005703502.1 CDS Deval_2722 NC_017310.1 3053881 3055950 R KEGG: dde:Dde_3016 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase complement(3053881..3055950) Desulfovibrio vulgaris RCH1 12868580 YP_005703503.1 CDS Deval_2723 NC_017310.1 3056620 3057468 D PFAM: flagellin domain protein; KEGG: dde:Dde_3018 flagellin N-terminal domain-containing protein; flagellin domain-containing protein 3056620..3057468 Desulfovibrio vulgaris RCH1 12868581 YP_005703504.1 CDS Deval_2724 NC_017310.1 3057672 3058025 D PFAM: protein of unknown function DUF486; KEGG: dds:Ddes_0627 protein of unknown function DUF486; hypothetical protein 3057672..3058025 Desulfovibrio vulgaris RCH1 12868582 YP_005703505.1 CDS Deval_2725 NC_017310.1 3058012 3059730 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dde:Dde_2518 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(3058012..3059730) Desulfovibrio vulgaris RCH1 12868583 YP_005703506.1 CDS Deval_2726 NC_017310.1 3059907 3061619 D KEGG: dds:Ddes_0267 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; glutaminyl-tRNA synthetase 3059907..3061619 Desulfovibrio vulgaris RCH1 12868584 YP_005703507.1 CDS Deval_2727 NC_017310.1 3061879 3062916 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dba:Dbac_0438 protein of unknown function DUF6 transmembrane; hypothetical protein complement(3061879..3062916) Desulfovibrio vulgaris RCH1 12868585 YP_005703508.1 CDS Deval_2728 NC_017310.1 3063242 3064804 D KEGG: dde:Dde_0621 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; DeoR family transcriptional regulator 3063242..3064804 Desulfovibrio vulgaris RCH1 12868586 YP_005703509.1 CDS Deval_2729 NC_017310.1 3065198 3066877 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Cache domain protein; KEGG: tcx:Tcr_1920 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 3065198..3066877 Desulfovibrio vulgaris RCH1 12868589 YP_005703510.1 CDS Deval_2730 NC_017310.1 3067297 3068334 R KEGG: dba:Dbac_2263 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; Fis family sigma-54 specific transcriptional regulator complement(3067297..3068334) Desulfovibrio vulgaris RCH1 12868590 YP_005703511.1 CDS Deval_2731 NC_017310.1 3068581 3069579 D PFAM: protein of unknown function DUF81; KEGG: dds:Ddes_0811 protein of unknown function DUF81; hypothetical protein 3068581..3069579 Desulfovibrio vulgaris RCH1 12868591 YP_005703512.1 CDS Deval_2732 NC_017310.1 3069592 3070008 D KEGG: dma:DMR_40110 hypothetical membrane protein; hypothetical protein 3069592..3070008 Desulfovibrio vulgaris RCH1 12868592 YP_005703513.1 CDS Deval_2733 NC_017310.1 3070096 3071520 D TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_0318 Fis family transcriptional regulator; SMART: AAA ATPase; PAS modulated Fis family sigma-54-specific transcriptional regulator 3070096..3071520 Desulfovibrio vulgaris RCH1 12868593 YP_005703514.1 CDS Deval_2734 NC_017310.1 3071524 3071871 D KEGG: dba:Dbac_2267 hypothetical protein; hypothetical protein 3071524..3071871 Desulfovibrio vulgaris RCH1 12868594 YP_005703515.1 CDS Deval_2735 NC_017310.1 3071868 3073601 D KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 3071868..3073601 Desulfovibrio vulgaris RCH1 12868595 YP_005703516.1 CDS Deval_2736 NC_017310.1 3073605 3073991 D KEGG: dma:DMR_40070 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3073605..3073991 Desulfovibrio vulgaris RCH1 12868596 YP_005703517.1 CDS Deval_2737 NC_017310.1 3073993 3074652 D KEGG: dds:Ddes_0815 hypothetical protein; hypothetical protein 3073993..3074652 Desulfovibrio vulgaris RCH1 12868597 YP_005703518.1 CDS Deval_2738 NC_017310.1 3074772 3075071 D KEGG: bmr:BMI_II773 phosphogluconate dehydratase; hypothetical protein 3074772..3075071 Desulfovibrio vulgaris RCH1 12868598 YP_005703519.1 CDS Deval_2739 NC_017310.1 3075270 3075725 D KEGG: dma:DMR_40050 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3075270..3075725 Desulfovibrio vulgaris RCH1 12868599 YP_005703520.1 CDS Deval_2740 NC_017310.1 3075739 3076863 D KEGG: dds:Ddes_0817 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; response regulator receiver sensor signal transduction histidine kinase 3075739..3076863 Desulfovibrio vulgaris RCH1 12868600 YP_005703521.1 CDS Deval_2741 NC_017310.1 3076959 3078155 R KEGG: dsa:Desal_1453 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; response regulator receiver sensor signal transduction histidine kinase complement(3076959..3078155) Desulfovibrio vulgaris RCH1 12868601 YP_005703522.1 CDS Deval_2742 NC_017310.1 3078404 3080389 R KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase complement(3078404..3080389) Desulfovibrio vulgaris RCH1 12868602 YP_005703523.1 CDS Deval_2743 NC_017310.1 3080614 3083310 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dde:Dde_3208 acetyltransferase; N-acetyltransferase GCN5 3080614..3083310 Desulfovibrio vulgaris RCH1 12868603 YP_005703524.1 CDS Deval_2744 NC_017310.1 3083652 3084491 R PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein; glycosyl transferase family protein complement(3083652..3084491) Desulfovibrio vulgaris RCH1 12868604 YP_005703525.1 CDS Deval_2745 NC_017310.1 3084717 3085268 R PFAM: CheD family protein; KEGG: dde:Dde_3212 CheD, stimulates methylation of MCP proteins; protein CheD complement(3084717..3085268) Desulfovibrio vulgaris RCH1 12868605 YP_005703526.1 CDS Deval_2746 NC_017310.1 3085350 3085625 R KEGG: dde:Dde_3213 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(3085350..3085625) Desulfovibrio vulgaris RCH1 12868606 YP_005703527.1 CDS Deval_2747 NC_017310.1 3085706 3085885 R hypothetical protein complement(3085706..3085885) Desulfovibrio vulgaris RCH1 12868607 YP_005703528.1 CDS Deval_2748 NC_017310.1 3085891 3086931 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0082 hypothetical protein; membrane-bound metal-dependent hydrolase complement(3085891..3086931) Desulfovibrio vulgaris RCH1 12868608 YP_005703529.1 CDS Deval_2749 NC_017310.1 3087145 3088257 R PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: dde:Dde_3214 hypothetical protein; hypothetical protein complement(3087145..3088257) Desulfovibrio vulgaris RCH1 12868609 YP_005703530.1 CDS Deval_2750 NC_017310.1 3088595 3089227 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU0572 HAD family hydrolase; haloacid dehalogenase domain-containing protein hydrolase 3088595..3089227 Desulfovibrio vulgaris RCH1 12868610 YP_005703531.1 CDS Deval_2751 NC_017310.1 3089337 3089990 D TIGRFAM: phosphatidylserine decarboxylase related protein; KEGG: dde:Dde_3216 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase 3089337..3089990 Desulfovibrio vulgaris RCH1 12868611 YP_005703532.1 CDS Deval_2752 NC_017310.1 3090053 3090802 D KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 3090053..3090802 Desulfovibrio vulgaris RCH1 12868612 YP_005703533.1 CDS Deval_2753 NC_017310.1 3090979 3092508 D KEGG: dde:Dde_3218 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase 3090979..3092508 Desulfovibrio vulgaris RCH1 12868613 YP_005703534.1 CDS Deval_2754 NC_017310.1 3092510 3093769 D KEGG: dde:Dde_3219 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase large subunit 3092510..3093769 Desulfovibrio vulgaris RCH1 12868614 YP_005703535.1 CDS Deval_2755 NC_017310.1 3093787 3094290 D KEGG: dde:Dde_3220 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 3093787..3094290 Desulfovibrio vulgaris RCH1 12868615 YP_005703536.1 CDS Deval_2756 NC_017310.1 3094293 3095300 D PFAM: protein of unknown function DUF89; KEGG: dde:Dde_3221 hypothetical protein; hypothetical protein 3094293..3095300 Desulfovibrio vulgaris RCH1 12868616 YP_005703537.1 CDS Deval_2757 NC_017310.1 3095330 3096403 D TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: dde:Dde_3222 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3095330..3096403 Desulfovibrio vulgaris RCH1 12868617 YP_005703538.1 CDS Deval_2758 NC_017310.1 3097012 3097434 R KEGG: dde:Dde_3224 phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain protein; phage shock protein C complement(3097012..3097434) Desulfovibrio vulgaris RCH1 12868618 YP_005703539.1 CDS Deval_2759 NC_017310.1 3097431 3097730 R TIGRFAM: phage shock protein B; KEGG: dde:Dde_3225 hypothetical protein; phage shock protein B complement(3097431..3097730) Desulfovibrio vulgaris RCH1 12868619 YP_005703540.1 CDS Deval_2760 NC_017310.1 3097809 3098540 R KEGG: dde:Dde_3226 phage shock protein A; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; phage shock protein A, PspA complement(3097809..3098540) Desulfovibrio vulgaris RCH1 12868620 YP_005703541.1 CDS Deval_2761 NC_017310.1 3098640 3099785 D TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; KEGG: dde:Dde_3227 Fis family transcriptional regulator; SMART: AAA ATPase; sigma-54 interacting domain-containing protein 3098640..3099785 Desulfovibrio vulgaris RCH1 12868621 YP_005703542.1 CDS Deval_2762 NC_017310.1 3099815 3101767 D KEGG: dde:Dde_3228 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdenum cofactor synthesis domain-containing protein 3099815..3101767 Desulfovibrio vulgaris RCH1 12868622 YP_005703543.1 CDS Deval_2763 NC_017310.1 3102146 3103018 D KEGG: dma:DMR_39560 hypothetical protein; hypothetical protein 3102146..3103018 Desulfovibrio vulgaris RCH1 12868623 YP_005703544.1 CDS Deval_2764 NC_017310.1 3103039 3104655 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3103039..3104655 Desulfovibrio vulgaris RCH1 12868624 YP_005703545.1 CDS Deval_2765 NC_017310.1 3104666 3107341 D PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431 putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; family 2 glycosyl transferase 3104666..3107341 Desulfovibrio vulgaris RCH1 12868625 YP_005703546.1 CDS Deval_2766 NC_017310.1 3107338 3108366 D PFAM: glycosyl transferase family 2; KEGG: gem:GM21_3823 glycosyl transferase family 2; family 2 glycosyl transferase 3107338..3108366 Desulfovibrio vulgaris RCH1 12868626 YP_005703547.1 CDS Deval_2767 NC_017310.1 3108637 3109800 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0428 glycosyltransferase-like protein; group 1 glycosyl transferase complement(3108637..3109800) Desulfovibrio vulgaris RCH1 12868627 YP_005703548.1 CDS Deval_2768 NC_017310.1 3109955 3110878 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0427 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase complement(3109955..3110878) Desulfovibrio vulgaris RCH1 12868628 YP_005703549.1 CDS Deval_2769 NC_017310.1 3110880 3111656 R KEGG: dde:Dde_0428 glycosyltransferase-like protein; glycosyltransferase-like protein complement(3110880..3111656) Desulfovibrio vulgaris RCH1 12868629 YP_005703550.1 CDS Deval_2770 NC_017310.1 3111686 3113056 R KEGG: gem:GM21_2601 hypothetical protein; hypothetical protein complement(3111686..3113056) Desulfovibrio vulgaris RCH1 12868630 YP_005703551.1 CDS Deval_2771 NC_017310.1 3113046 3113873 R PFAM: formyl transferase domain protein; KEGG: tro:trd_0824 methionyl-tRNA formyltransferase; formyl transferase domain-containing protein complement(3113046..3113873) Desulfovibrio vulgaris RCH1 12868631 YP_005703552.1 CDS Deval_2772 NC_017310.1 3114038 3115228 R KEGG: mag:amb0692 hypothetical protein; hypothetical protein complement(3114038..3115228) Desulfovibrio vulgaris RCH1 12868632 YP_005703553.1 CDS Deval_2773 NC_017310.1 3115225 3116022 R PFAM: protein of unknown function DUF692; KEGG: fre:Franean1_4348 hypothetical protein; hypothetical protein complement(3115225..3116022) Desulfovibrio vulgaris RCH1 12868633 YP_005703554.1 CDS Deval_2774 NC_017310.1 3116019 3117152 R PFAM: Methyltransferase type 11; KEGG: shl:Shal_1398 methyltransferase type 12; type 11 methyltransferase complement(3116019..3117152) Desulfovibrio vulgaris RCH1 12868634 YP_005703555.1 CDS Deval_2775 NC_017310.1 3117223 3118335 R PFAM: Radical SAM domain protein; KEGG: dsa:Desal_1058 radical SAM domain protein; radical SAM protein complement(3117223..3118335) Desulfovibrio vulgaris RCH1 12868635 YP_005703556.1 CDS Deval_2776 NC_017310.1 3118664 3120388 D PFAM: Radical SAM domain protein; KEGG: dsa:Desal_0562 radical SAM domain protein; radical SAM protein 3118664..3120388 Desulfovibrio vulgaris RCH1 12868636 YP_005703557.1 CDS Deval_2777 NC_017310.1 3120399 3121433 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cwo:Cwoe_1546 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 3120399..3121433 Desulfovibrio vulgaris RCH1 12868637 YP_005703558.1 CDS Deval_2778 NC_017310.1 3121444 3122805 D PFAM: acylneuraminate cytidylyltransferase; Methyltransferase type 12; KEGG: dma:DMR_40450 acylneuraminate cytidylyltransferase family protein; acylneuraminate cytidylyltransferase 3121444..3122805 Desulfovibrio vulgaris RCH1 12868638 YP_005703559.1 CDS Deval_2779 NC_017310.1 3122808 3124031 D KEGG: ele:Elen_2416 hypothetical protein; hypothetical protein 3122808..3124031 Desulfovibrio vulgaris RCH1 12868639 YP_005703560.1 CDS Deval_2780 NC_017310.1 3124028 3125104 D PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: mag:amb0080 sialic acid synthase; N-acetylneuraminic acid synthase domain-containing protein 3124028..3125104 Desulfovibrio vulgaris RCH1 12868640 YP_005703561.1 CDS Deval_2781 NC_017310.1 3125101 3126084 D PFAM: Radical SAM domain protein; KEGG: mno:Mnod_3289 radical SAM domain protein; radical SAM protein 3125101..3126084 Desulfovibrio vulgaris RCH1 12868641 YP_005703562.1 CDS Deval_2782 NC_017310.1 3126094 3127272 D KEGG: bsu:BSU37890 putative glutamine-dependent sugar transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 3126094..3127272 Desulfovibrio vulgaris RCH1 12868642 YP_005703563.1 CDS Deval_2783 NC_017310.1 3127277 3128071 D PFAM: WbqC-like family protein; KEGG: dma:DMR_40380 hypothetical protein; WbqC-like family protein 3127277..3128071 Desulfovibrio vulgaris RCH1 12868643 YP_005703564.1 CDS Deval_2784 NC_017310.1 3128100 3129971 D KEGG: xop:PXO_03686 glutamate-ammonia-ligase adenylyltransferase; hypothetical protein 3128100..3129971 Desulfovibrio vulgaris RCH1 12868644 YP_005703565.1 CDS Deval_2785 NC_017310.1 3130024 3131730 D PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2892 glycosyl transferase family protein; family 2 glycosyl transferase 3130024..3131730 Desulfovibrio vulgaris RCH1 12868645 YP_005703566.1 CDS Deval_2786 NC_017310.1 3131718 3133811 D KEGG: dma:DMR_00560 asparagine synthetase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 3131718..3133811 Desulfovibrio vulgaris RCH1 12868646 YP_005703567.1 CDS Deval_2787 NC_017310.1 3133793 3134359 D PFAM: Methyltransferase type 11; KEGG: mag:amb3020 hypothetical protein; type 11 methyltransferase 3133793..3134359 Desulfovibrio vulgaris RCH1 12868647 YP_005703568.1 CDS Deval_2788 NC_017310.1 3134474 3135919 R KEGG: dma:DMR_p1_00150 hypothetical protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein complement(3134474..3135919) Desulfovibrio vulgaris RCH1 12868648 YP_005703569.1 CDS Deval_2789 NC_017310.1 3135951 3136982 R PFAM: Methyltransferase type 12; KEGG: ret:RHE_CH00772 putative methyltransferase protein; type 12 methyltransferase complement(3135951..3136982) Desulfovibrio vulgaris RCH1 12868649 YP_005703570.1 CDS Deval_2790 NC_017310.1 3136979 3138112 R KEGG: sti:Sthe_2856 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein complement(3136979..3138112) Desulfovibrio vulgaris RCH1 12868650 YP_005703571.1 CDS Deval_2791 NC_017310.1 3138194 3139651 R KEGG: gbm:Gbem_3304 Radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein complement(3138194..3139651) Desulfovibrio vulgaris RCH1 12868651 YP_005703572.1 CDS Deval_2792 NC_017310.1 3139687 3140055 R KEGG: dds:Ddes_0695 hypothetical protein; hypothetical protein complement(3139687..3140055) Desulfovibrio vulgaris RCH1 12868652 YP_005703573.1 CDS Deval_2793 NC_017310.1 3140223 3141254 R KEGG: dde:Dde_3231 putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(3140223..3141254) Desulfovibrio vulgaris RCH1 12868653 YP_005703574.1 CDS Deval_2794 NC_017310.1 3141655 3145074 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3233 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; multi-sensor hybrid histidine kinase 3141655..3145074 Desulfovibrio vulgaris RCH1 12868654 YP_005703575.1 CDS Deval_2795 NC_017310.1 3145071 3146495 D KEGG: dde:Dde_3234 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; putative two component, sigma54 specific, transcriptional regulator, Fis family 3145071..3146495 Desulfovibrio vulgaris RCH1 12868655 YP_005703576.1 CDS Deval_2796 NC_017310.1 3146905 3150552 D KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate ferredoxin/flavodoxin oxidoreductase 3146905..3150552 Desulfovibrio vulgaris RCH1 12868656 YP_005703577.1 CDS Deval_2797 NC_017310.1 3150658 3152370 D KEGG: dba:Dbac_1045 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 3150658..3152370 Desulfovibrio vulgaris RCH1 12868657 YP_005703578.1 CDS Deval_2798 NC_017310.1 3152545 3153930 D PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_3239 glycolate oxidase, subunit GlcD; FAD linked oxidase domain-containing protein 3152545..3153930 Desulfovibrio vulgaris RCH1 12868658 YP_005703579.1 CDS Deval_2799 NC_017310.1 3153935 3155230 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein; hypothetical protein 3153935..3155230 Desulfovibrio vulgaris RCH1 12868659 YP_005703580.1 CDS Deval_2800 NC_017310.1 3155354 3157468 D KEGG: dde:Dde_3241 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; phosphate acetyltransferase 3155354..3157468 Desulfovibrio vulgaris RCH1 12868660 YP_005703581.1 CDS Deval_2801 NC_017310.1 3157494 3158702 D KEGG: dde:Dde_3242 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 3157494..3158702 Desulfovibrio vulgaris RCH1 12868661 YP_005703582.1 CDS Deval_2802 NC_017310.1 3158802 3159893 D PFAM: DRTGG domain protein; KEGG: dde:Dde_3243 hypothetical protein; DRTGG domain-containing protein 3158802..3159893 Desulfovibrio vulgaris RCH1 12868662 YP_005703583.1 CDS Deval_2803 NC_017310.1 3159890 3160519 D PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein; hypothetical protein 3159890..3160519 Desulfovibrio vulgaris RCH1 12868663 YP_005703584.1 CDS Deval_2804 NC_017310.1 3160523 3162676 D PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein; hypothetical protein 3160523..3162676 Desulfovibrio vulgaris RCH1 12868664 YP_005703585.1 CDS Deval_2805 NC_017310.1 3162868 3164679 D KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 3162868..3164679 Desulfovibrio vulgaris RCH1 12868665 YP_005703586.1 CDS Deval_2806 NC_017310.1 3164862 3165968 R KEGG: dde:Dde_3247 hypothetical protein; hypothetical protein complement(3164862..3165968) Desulfovibrio vulgaris RCH1 12868666 YP_005703587.1 CDS Deval_2807 NC_017310.1 3165955 3166827 R KEGG: dde:Dde_3248 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain-containing protein complement(3165955..3166827) Desulfovibrio vulgaris RCH1 12868667 YP_005703588.1 CDS Deval_2808 NC_017310.1 3167281 3168270 R PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein complement(3167281..3168270) Desulfovibrio vulgaris RCH1 12868669 YP_005703589.1 CDS Deval_2809 NC_017310.1 3168361 3168651 D PFAM: cytochrome c class I; KEGG: dba:Dbac_1543 cytochrome c-553; cytochrome c class I 3168361..3168651 Desulfovibrio vulgaris RCH1 12868670 YP_005703590.1 CDS Deval_2810 NC_017310.1 3168691 3168927 D PFAM: protein of unknown function DUF903; KEGG: pmy:Pmen_2579 hypothetical protein; hypothetical protein 3168691..3168927 Desulfovibrio vulgaris RCH1 12868671 YP_005703591.1 CDS Deval_2811 NC_017310.1 3169156 3170187 D KEGG: dde:Dde_0264 hypothetical protein; hypothetical protein 3169156..3170187 Desulfovibrio vulgaris RCH1 12868672 YP_005703592.1 CDS Deval_2812 NC_017310.1 3170319 3171020 D KEGG: dde:Dde_0393 hypothetical protein; hypothetical protein 3170319..3171020 Desulfovibrio vulgaris RCH1 12868673 YP_005703593.1 CDS Deval_2813 NC_017310.1 3171487 3174348 D KEGG: dde:Dde_0257 histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS/PAC sensor hybrid histidine kinase 3171487..3174348 Desulfovibrio vulgaris RCH1 12868674 YP_005703594.1 CDS Deval_2814 NC_017310.1 3174565 3175671 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(3174565..3175671) Desulfovibrio vulgaris RCH1 12868675 YP_005703595.1 CDS Deval_2815 NC_017310.1 3176141 3177088 R PFAM: aminotransferase class IV; KEGG: dde:Dde_0255 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase; class IV aminotransferase complement(3176141..3177088) Desulfovibrio vulgaris RCH1 12868676 YP_005703596.1 CDS Deval_2816 NC_017310.1 3177347 3178396 R TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase complement(3177347..3178396) Desulfovibrio vulgaris RCH1 12868678 YP_005703597.1 CDS Deval_2817 NC_017310.1 3178443 3178856 R KEGG: dde:Dde_0253 hemerythrin; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin-like metal-binding protein complement(3178443..3178856) Desulfovibrio vulgaris RCH1 12868679 YP_005703598.1 CDS Deval_2818 NC_017310.1 3178980 3179414 R PFAM: protein of unknown function DUF606; KEGG: dde:Dde_0252 hypothetical protein; hypothetical protein complement(3178980..3179414) Desulfovibrio vulgaris RCH1 12868680 YP_005703599.1 CDS Deval_2819 NC_017310.1 3179636 3180025 R PFAM: NUDIX hydrolase; KEGG: dde:Dde_0251 mutator MutT protein; NUDIX hydrolase complement(3179636..3180025) Desulfovibrio vulgaris RCH1 12868681 YP_005703600.1 CDS Deval_2820 NC_017310.1 3180025 3182004 R KEGG: dde:Dde_0250 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(3180025..3182004) Desulfovibrio vulgaris RCH1 12868682 YP_005703601.1 CDS Deval_2821 NC_017310.1 3182239 3183132 R PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dde:Dde_0539 protein-L-isoaspartate methyltransferase-like; tRNA methyltransferase complex GCD14 subunit complement(3182239..3183132) Desulfovibrio vulgaris RCH1 12868683 YP_005703602.1 CDS Deval_2822 NC_017310.1 3183503 3184597 D PFAM: Radical SAM domain protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein; radical SAM protein 3183503..3184597 Desulfovibrio vulgaris RCH1 12868684 YP_005703603.1 CDS Deval_2823 NC_017310.1 3184643 3186112 D TIGRFAM: ribonuclease, Rne/Rng family; KEGG: dde:Dde_0537 ribonuclease E; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, Rne/Rng family 3184643..3186112 Desulfovibrio vulgaris RCH1 12868685 YP_005703604.1 CDS Deval_2824 NC_017310.1 3186115 3186768 D PFAM: protein of unknown function DUF208; KEGG: dba:Dbac_3350 protein of unknown function DUF208; hypothetical protein 3186115..3186768 Desulfovibrio vulgaris RCH1 12868686 YP_005703605.1 CDS Deval_2825 NC_017310.1 3186813 3188306 D TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: dds:Ddes_2205 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 3186813..3188306 Desulfovibrio vulgaris RCH1 12868687 YP_005703606.1 CDS Deval_2826 NC_017310.1 3188303 3191974 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: mno:Mnod_4585 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; multi-sensor hybrid histidine kinase 3188303..3191974 Desulfovibrio vulgaris RCH1 12868688 YP_005703607.1 CDS Deval_2827 NC_017310.1 3192159 3193625 R TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dde:Dde_0560 signal recognition particle-docking protein FtsY; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(3192159..3193625) Desulfovibrio vulgaris RCH1 12868689 YP_005703608.1 CDS Deval_2828 NC_017310.1 3193810 3196104 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein; signal transduction histidine kinase, nitrogen specific, NtrB 3193810..3196104 Desulfovibrio vulgaris RCH1 12868690 YP_005703609.1 CDS Deval_2829 NC_017310.1 3196460 3199702 R KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; multi-sensor hybrid histidine kinase complement(3196460..3199702) Desulfovibrio vulgaris RCH1 12868691 YP_005703610.1 CDS Deval_2830 NC_017310.1 3199824 3201512 R manually curated; TIGRFAM: integral membrane protein MviN; KEGG: dde:Dde_0543 integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein MviN complement(3199824..3201512) Desulfovibrio vulgaris RCH1 12868692 YP_005703611.1 CDS Deval_2831 NC_017310.1 3201854 3203608 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dde:Dde_0550 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3201854..3203608 Desulfovibrio vulgaris RCH1 12868693 YP_005703612.1 CDS Deval_2832 NC_017310.1 3203736 3205388 R PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 AMP-binding domain protein; AMP-dependent synthetase and ligase complement(3203736..3205388) Desulfovibrio vulgaris RCH1 12868694 YP_005703613.1 CDS Deval_2833 NC_017310.1 3205403 3205972 R KEGG: dde:Dde_0556 MerR family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; cupin complement(3205403..3205972) Desulfovibrio vulgaris RCH1 12868695 YP_005703614.1 CDS Deval_2834 NC_017310.1 3206136 3208586 D KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; (NiFe) hydrogenase maturation protein HypF 3206136..3208586 Desulfovibrio vulgaris RCH1 12868696 YP_005703615.1 CDS Deval_2835 NC_017310.1 3208816 3211299 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: tte:TTE1100 diguanylate cyclase/phosphodiesterase; SMART: GGDEF domain containing protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase 3208816..3211299 Desulfovibrio vulgaris RCH1 12868697 YP_005703616.1 CDS Deval_2836 NC_017310.1 3211717 3213039 R PFAM: aminodeoxychorismate lyase; KEGG: dds:Ddes_0030 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(3211717..3213039) Desulfovibrio vulgaris RCH1 12868698 YP_005703617.1 CDS Deval_2837 NC_017310.1 3213036 3213464 R KEGG: dde:Dde_0314 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; Holliday junction resolvase YqgF complement(3213036..3213464) Desulfovibrio vulgaris RCH1 12868699 YP_005703618.1 CDS Deval_2838 NC_017310.1 3213546 3217109 R PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0312 oxidoreductase; FAD linked oxidase domain-containing protein complement(3213546..3217109) Desulfovibrio vulgaris RCH1 12868700 YP_005703619.1 CDS Deval_2839 NC_017310.1 3217276 3219273 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein complement(3217276..3219273) Desulfovibrio vulgaris RCH1 12868701 YP_005703620.1 CDS Deval_2840 NC_017310.1 3219449 3220360 D KEGG: dde:Dde_0307 hypothetical protein; hypothetical protein 3219449..3220360 Desulfovibrio vulgaris RCH1 12868702 YP_005703621.1 CDS Deval_2841 NC_017310.1 3220671 3221558 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dsa:Desal_2414 protein of unknown function DUF6 transmembrane; hypothetical protein complement(3220671..3221558) Desulfovibrio vulgaris RCH1 12868703 YP_005703622.1 CDS Deval_2842 NC_017310.1 3222130 3222711 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_0306 hypothetical protein; alkyl hydroperoxide reductase 3222130..3222711 Desulfovibrio vulgaris RCH1 12868704 YP_005703623.1 CDS Deval_2843 NC_017310.1 3223253 3223900 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dsa:Desal_0285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 3223253..3223900 Desulfovibrio vulgaris RCH1 12868705 YP_005703624.1 CDS Deval_2844 NC_017310.1 3224647 3225249 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3224647..3225249 Desulfovibrio vulgaris RCH1 12868706 YP_005703625.1 CDS Deval_2845 NC_017310.1 3225511 3225909 D PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator; MucR family transcriptional regulator 3225511..3225909 Desulfovibrio vulgaris RCH1 12868707 YP_005703626.1 CDS Deval_2846 NC_017310.1 3226177 3227079 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein; hypothetical protein 3226177..3227079 Desulfovibrio vulgaris RCH1 12868708 YP_005703627.1 CDS Deval_2847 NC_017310.1 3227420 3229231 R KEGG: dde:Dde_0347 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer complement(3227420..3229231) Desulfovibrio vulgaris RCH1 12868709 YP_005703628.1 CDS Deval_2848 NC_017310.1 3229654 3230040 R PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0346 MucR family transcriptional regulator; MucR family transcriptional regulator complement(3229654..3230040) Desulfovibrio vulgaris RCH1 12868710 YP_005703629.1 CDS Deval_2849 NC_017310.1 3230212 3230457 D KEGG: dde:Dde_0344 hypothetical protein; hypothetical protein 3230212..3230457 Desulfovibrio vulgaris RCH1 12868711 YP_005703630.1 CDS Deval_2850 NC_017310.1 3230408 3232273 D KEGG: dde:Dde_0343 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid a,c-diamide synthase 3230408..3232273 Desulfovibrio vulgaris RCH1 12868712 YP_005703631.1 CDS Deval_2851 NC_017310.1 3232282 3232923 D KEGG: dde:Dde_0342 precorrin-8X methylmutase; PFAM: Precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase 3232282..3232923 Desulfovibrio vulgaris RCH1 12868713 YP_005703632.1 CDS Deval_2852 NC_017310.1 3233032 3234765 D KEGG: dde:Dde_0341 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 3233032..3234765 Desulfovibrio vulgaris RCH1 12868714 YP_005703633.1 CDS Deval_2853 NC_017310.1 3234755 3235240 D KEGG: dds:Ddes_0363 hypothetical protein; hypothetical protein 3234755..3235240 Desulfovibrio vulgaris RCH1 12868715 YP_005703634.1 CDS Deval_2854 NC_017310.1 3235725 3236930 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 OMPP1/FadL/TodX family outer membrane protein; aromatic hydrocarbon degradation membrane protein complement(3235725..3236930) Desulfovibrio vulgaris RCH1 12868716 YP_005703635.1 CDS Deval_2855 NC_017310.1 3237404 3238750 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pzu:PHZ_c2608 L-aspartate oxidase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3237404..3238750 Desulfovibrio vulgaris RCH1 12868717 YP_005703636.1 CDS Deval_2856 NC_017310.1 3238965 3239612 D KEGG: hch:HCH_03506 hypothetical protein; hypothetical protein 3238965..3239612 Desulfovibrio vulgaris RCH1 12868718 YP_005703637.1 CDS Deval_2857 NC_017310.1 3239656 3239883 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(3239656..3239883) Desulfovibrio vulgaris RCH1 12868719 YP_005703638.1 CDS Deval_2858 NC_017310.1 3239902 3240477 R PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dol:Dole_2647 rubrerythrin; rubrerythrin complement(3239902..3240477) Desulfovibrio vulgaris RCH1 12868720 YP_005703639.1 CDS Deval_2859 NC_017310.1 3240522 3240908 R PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein; ferric uptake regulator family protein complement(3240522..3240908) Desulfovibrio vulgaris RCH1 12868721 YP_005703640.1 CDS Deval_2860 NC_017310.1 3240938 3241165 R hypothetical protein complement(3240938..3241165) Desulfovibrio vulgaris RCH1 12868722 YP_005703641.1 CDS Deval_2861 NC_017310.1 3241234 3242553 R PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein; outer membrane efflux protein complement(3241234..3242553) Desulfovibrio vulgaris RCH1 12868723 YP_005703642.1 CDS Deval_2862 NC_017310.1 3242690 3242893 D hypothetical protein 3242690..3242893 Desulfovibrio vulgaris RCH1 12868724 YP_005703643.1 CDS Deval_2863 NC_017310.1 3242937 3243629 D KEGG: dde:Dde_3629 TolQ protein; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ 3242937..3243629 Desulfovibrio vulgaris RCH1 12868725 YP_005703644.1 CDS Deval_2864 NC_017310.1 3243639 3244058 D KEGG: dds:Ddes_0861 protein TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; protein TolR 3243639..3244058 Desulfovibrio vulgaris RCH1 12868726 YP_005703645.1 CDS Deval_2865 NC_017310.1 3244068 3245093 D TIGRFAM: protein TolA; TonB family protein; KEGG: dds:Ddes_0860 protein TolA; protein TolA 3244068..3245093 Desulfovibrio vulgaris RCH1 12868727 YP_005703646.1 CDS Deval_2866 NC_017310.1 3245121 3245786 D TIGRFAM: TonB family protein; KEGG: dds:Ddes_0859 hypothetical protein; TonB family protein 3245121..3245786 Desulfovibrio vulgaris RCH1 12868728 YP_005703647.1 CDS Deval_2867 NC_017310.1 3245896 3247233 D manually curated; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like beta Propeller containing protein; Tol-Pal system beta propeller repeat-containing protein TolB 3245896..3247233 Desulfovibrio vulgaris RCH1 12868729 YP_005703648.1 CDS Deval_2868 NC_017310.1 3247433 3247936 D KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein, putative; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 3247433..3247936 Desulfovibrio vulgaris RCH1 12868730 YP_005703649.1 CDS Deval_2869 NC_017310.1 3249176 3249310 D hypothetical protein 3249176..3249310 Desulfovibrio vulgaris RCH1 12868731 YP_005703650.1 CDS Deval_2870 NC_017310.1 3255799 3257640 R TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; Hemerythrin HHE cation binding domain protein; KEGG: kko:Kkor_1389 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase with hemerythrin-like metal-binding domain protein complement(3255799..3257640) Desulfovibrio vulgaris RCH1 12868737 YP_005703651.1 CDS Deval_2871 NC_017310.1 3258043 3259812 D PFAM: cytochrome c class I; KEGG: dde:Dde_0561 cytochrome c family protein; cytochrome c class I 3258043..3259812 Desulfovibrio vulgaris RCH1 12868738 YP_005703652.1 CDS Deval_2872 NC_017310.1 3259960 3261387 R KEGG: dsa:Desal_1359 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; Na+/H+ antiporter NhaC complement(3259960..3261387) Desulfovibrio vulgaris RCH1 12868739 YP_005703653.1 CDS Deval_2873 NC_017310.1 3261581 3261781 R KEGG: sfu:Sfum_2223 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(3261581..3261781) Desulfovibrio vulgaris RCH1 12868740 YP_005703654.1 CDS Deval_2874 NC_017310.1 3261821 3263542 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: mag:amb1056 putative oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(3261821..3263542) Desulfovibrio vulgaris RCH1 12868742 YP_005703655.1 CDS Deval_2875 NC_017310.1 3263789 3264598 R KEGG: dde:Dde_0463 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; CarD family transcriptional regulator complement(3263789..3264598) Desulfovibrio vulgaris RCH1 12868744 YP_005703656.1 CDS Deval_2876 NC_017310.1 3264646 3265449 R KEGG: dde:Dde_3645 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein complement(3264646..3265449) Desulfovibrio vulgaris RCH1 12868746 YP_005703657.1 CDS Deval_2877 NC_017310.1 3265500 3266627 R KEGG: dde:Dde_3646 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; carbamoyl-phosphate synthase small subunit complement(3265500..3266627) Desulfovibrio vulgaris RCH1 12868748 YP_005703658.1 CDS Deval_2878 NC_017310.1 3266624 3267382 R TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: dde:Dde_3647 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(3266624..3267382) Desulfovibrio vulgaris RCH1 12868750 YP_005703659.1 CDS Deval_2879 NC_017310.1 3267701 3269290 D KEGG: dde:Dde_3649 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; peptide chain release factor 3 3267701..3269290 Desulfovibrio vulgaris RCH1 12868751 YP_005703660.1 CDS Deval_2880 NC_017310.1 3269555 3270157 D KEGG: vvi:100265790 hypothetical protein LOC100265790; hypothetical protein 3269555..3270157 Desulfovibrio vulgaris RCH1 12868752 YP_005703661.1 CDS Deval_2881 NC_017310.1 3270285 3270590 R PFAM: Stress responsive alpha-beta barrel domain-containing protein; KEGG: dde:Dde_0194 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein complement(3270285..3270590) Desulfovibrio vulgaris RCH1 12868753 YP_005703662.1 CDS Deval_2882 NC_017310.1 3270771 3272465 D PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0193 AMP-binding enzyme family protein; AMP-dependent synthetase and ligase 3270771..3272465 Desulfovibrio vulgaris RCH1 12868754 YP_005703663.1 CDS Deval_2883 NC_017310.1 3272916 3274025 R PFAM: aminotransferase class V; KEGG: dat:HRM2_08190 aminotransferase, class V (putative purine catabolism protein PucG); class V aminotransferase complement(3272916..3274025) Desulfovibrio vulgaris RCH1 12868755 YP_005703664.1 CDS Deval_2884 NC_017310.1 3274345 3275082 R KEGG: dma:DMR_28350 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(3274345..3275082) Desulfovibrio vulgaris RCH1 12868756 YP_005703665.1 CDS Deval_2885 NC_017310.1 3275314 3275934 D PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ctt:CtCNB1_4571 heat shock protein; hypothetical protein 3275314..3275934 Desulfovibrio vulgaris RCH1 12868757 YP_005703666.1 CDS Deval_2886 NC_017310.1 3276457 3277053 D PFAM: Paraquat-inducible protein A; KEGG: dba:Dbac_0330 paraquat-inducible protein A; Paraquat-inducible protein A 3276457..3277053 Desulfovibrio vulgaris RCH1 12868758 YP_005703667.1 CDS Deval_2887 NC_017310.1 3277050 3277688 D PFAM: Paraquat-inducible protein A; KEGG: dba:Dbac_0329 paraquat-inducible protein A; Paraquat-inducible protein A 3277050..3277688 Desulfovibrio vulgaris RCH1 12868759 YP_005703668.1 CDS Deval_2888 NC_017310.1 3277678 3279309 D PFAM: Mammalian cell entry related domain protein; KEGG: dba:Dbac_0328 mammalian cell entry related domain protein; Mammalian cell entry related domain-containing protein 3277678..3279309 Desulfovibrio vulgaris RCH1 12868760 YP_005703669.1 CDS Deval_2889 NC_017310.1 3279299 3279916 D PFAM: protein of unknown function DUF330; KEGG: dba:Dbac_0327 protein of unknown function DUF330; hypothetical protein 3279299..3279916 Desulfovibrio vulgaris RCH1 12868761 YP_005703670.1 CDS Deval_2890 NC_017310.1 3280565 3281512 D PFAM: sugar-binding domain-containing protein; KEGG: dde:Dde_0407 transcriptional regulator, putative; DeoR family transcriptional regulator 3280565..3281512 Desulfovibrio vulgaris RCH1 12868762 YP_005703671.1 CDS Deval_2891 NC_017310.1 3281509 3283149 D KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 3281509..3283149 Desulfovibrio vulgaris RCH1 12868763 YP_005703672.1 CDS Deval_2892 NC_017310.1 3283257 3284012 D PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein; major intrinsic protein 3283257..3284012 Desulfovibrio vulgaris RCH1 12868764 YP_005703673.1 CDS Deval_2893 NC_017310.1 3284159 3285652 D KEGG: dma:DMR_27730 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; glycerol kinase 3284159..3285652 Desulfovibrio vulgaris RCH1 12868765 YP_005703674.1 CDS Deval_2894 NC_017310.1 3285915 3286523 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_1618 flavodoxin-like fold domain-containing protein; NAD(P)H dehydrogenase (quinone) complement(3285915..3286523) Desulfovibrio vulgaris RCH1 12868766 YP_005703675.1 CDS Deval_2895 NC_017310.1 3286579 3287235 R PFAM: nitroreductase; KEGG: dde:Dde_2199 nitroreductase family protein; nitroreductase complement(3286579..3287235) Desulfovibrio vulgaris RCH1 12868767 YP_005703676.1 CDS Deval_2896 NC_017310.1 3287863 3288639 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rru:Rru_A3017 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 3287863..3288639 Desulfovibrio vulgaris RCH1 12868768 YP_005703677.1 CDS Deval_2897 NC_017310.1 3289565 3290341 D KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 3289565..3290341 Desulfovibrio vulgaris RCH1 12868769 YP_005703678.1 CDS Deval_2898 NC_017310.1 3290756 3292369 R PFAM: polysaccharide export protein; KEGG: dds:Ddes_1826 polysaccharide export protein; polysaccharide export protein complement(3290756..3292369) Desulfovibrio vulgaris RCH1 12868771 YP_005703679.1 CDS Deval_2899 NC_017310.1 3292656 3293036 R KEGG: dds:Ddes_1825 putative lipoprotein; putative lipoprotein complement(3292656..3293036) Desulfovibrio vulgaris RCH1 12868772 YP_005703680.1 CDS Deval_2900 NC_017310.1 3293260 3294963 R TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_0659 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAC repeat-containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator complement(3293260..3294963) Desulfovibrio vulgaris RCH1 12868773 YP_005703681.1 CDS Deval_2901 NC_017310.1 3295265 3296854 D KEGG: dds:Ddes_0544 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 3295265..3296854 Desulfovibrio vulgaris RCH1 12868774 YP_005703682.1 CDS Deval_2902 NC_017310.1 3296884 3298512 D KEGG: drt:Dret_0167 cytochrome c family protein; cytochrome c family protein 3296884..3298512 Desulfovibrio vulgaris RCH1 12868775 YP_005703683.1 CDS Deval_2903 NC_017310.1 3298522 3299130 D KEGG: drt:Dret_0166 cytochrome b561; cytochrome b561 3298522..3299130 Desulfovibrio vulgaris RCH1 12868776 YP_005703684.1 CDS Deval_2904 NC_017310.1 3299682 3300230 R KEGG: mav:MAV_2777 acyl-CoA synthetase; hypothetical protein complement(3299682..3300230) Desulfovibrio vulgaris RCH1 12868777 YP_005703685.1 CDS Deval_2905 NC_017310.1 3300596 3301804 R PFAM: Phosphoglycerate mutase; 6-phosphofructo-2-kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase; phosphoglycerate mutase complement(3300596..3301804) Desulfovibrio vulgaris RCH1 12868778 YP_005703686.1 CDS Deval_2906 NC_017310.1 3302147 3303658 R TIGRFAM: 4-alpha-glucanotransferase; KEGG: dde:Dde_0510 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase complement(3302147..3303658) Desulfovibrio vulgaris RCH1 12868780 YP_005703687.1 CDS Deval_2907 NC_017310.1 3303867 3304757 R KEGG: dde:Dde_0508 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type complement(3303867..3304757) Desulfovibrio vulgaris RCH1 12868781 YP_005703688.1 CDS Deval_2908 NC_017310.1 3304741 3306474 R KEGG: dde:Dde_0507 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; 30S ribosomal protein S1 complement(3304741..3306474) Desulfovibrio vulgaris RCH1 12868782 YP_005703689.1 CDS Deval_2909 NC_017310.1 3306689 3307981 R TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_0506 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG complement(3306689..3307981) Desulfovibrio vulgaris RCH1 12868783 YP_005703690.1 CDS Deval_2910 NC_017310.1 3308060 3309721 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0505 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase 3308060..3309721 Desulfovibrio vulgaris RCH1 12868784 YP_005703691.1 CDS Deval_2911 NC_017310.1 3310273 3310896 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; KEGG: dde:Dde_0504 putative deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1 family protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 3310273..3310896 Desulfovibrio vulgaris RCH1 12868785 YP_005703692.1 CDS Deval_2912 NC_017310.1 3311372 3314263 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_0458 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 3311372..3314263 Desulfovibrio vulgaris RCH1 12868786 YP_005703693.1 CDS Deval_2913 NC_017310.1 3314326 3314637 D KEGG: rru:Rru_A1213 2-oxoglutarate dehydrogenase E1 component; hypothetical protein 3314326..3314637 Desulfovibrio vulgaris RCH1 12868787 YP_005703694.1 CDS Deval_2914 NC_017310.1 3314753 3316576 D KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; glucosamine/fructose-6-phosphate aminotransferase 3314753..3316576 Desulfovibrio vulgaris RCH1 12868788 YP_005703695.1 CDS Deval_2915 NC_017310.1 3316865 3318307 D KEGG: dsa:Desal_0972 hypothetical protein; hypothetical protein 3316865..3318307 Desulfovibrio vulgaris RCH1 12868789 YP_005703696.1 CDS Deval_2916 NC_017310.1 3318304 3319191 D PFAM: VacJ family lipoprotein; KEGG: dba:Dbac_2657 VacJ family lipoprotein; VacJ family lipoprotein 3318304..3319191 Desulfovibrio vulgaris RCH1 12868790 YP_005703697.1 CDS Deval_2917 NC_017310.1 3319312 3320304 R PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: dde:Dde_3178 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein complement(3319312..3320304) Desulfovibrio vulgaris RCH1 12868791 YP_005703698.1 CDS Deval_2918 NC_017310.1 3320596 3321645 D KEGG: lip:LI0076 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 3320596..3321645 Desulfovibrio vulgaris RCH1 12868792 YP_005703699.1 CDS Deval_2919 NC_017310.1 3321748 3323043 D PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 extracellular solute-binding protein; extracellular solute-binding protein 3321748..3323043 Desulfovibrio vulgaris RCH1 12868793 YP_005703700.1 CDS Deval_2920 NC_017310.1 3323117 3323998 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system; binding-protein-dependent transport system inner membrane protein 3323117..3323998 Desulfovibrio vulgaris RCH1 12868794 YP_005703701.1 CDS Deval_2921 NC_017310.1 3323995 3324828 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2657 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3323995..3324828 Desulfovibrio vulgaris RCH1 12868795 YP_005703702.1 CDS Deval_2922 NC_017310.1 3324835 3325695 D KEGG: dma:DMR_44460 hypothetical protein; hypothetical protein 3324835..3325695 Desulfovibrio vulgaris RCH1 12868796 YP_005703703.1 CDS Deval_2923 NC_017310.1 3325748 3326404 D KEGG: rru:Rru_A2969 alanyl-tRNA synthetase related protein; manually curated; SMART: Threonyl/alanyl tRNA synthetase SAD; threonyl/alanyl tRNA synthetase SAD 3325748..3326404 Desulfovibrio vulgaris RCH1 12868797 YP_005703704.1 CDS Deval_2924 NC_017310.1 3326498 3326980 D SMART: Transcription regulator AsnC-type; KEGG: dde:Dde_3179 AsnC family transcriptional regulator; AsnC family transcriptional regulator 3326498..3326980 Desulfovibrio vulgaris RCH1 12868798 YP_005703705.1 CDS Deval_2925 NC_017310.1 3327048 3328319 D KEGG: dde:Dde_3180 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; glutamate-1-semialdehyde-2,1-aminomutase 3327048..3328319 Desulfovibrio vulgaris RCH1 12868799 YP_005703706.1 CDS Deval_2926 NC_017310.1 3328440 3329636 D PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dma:DMR_02540 cobalamin biosynthesis protein CbiG; cobalamin (vitamin B12) biosynthesis protein CbiG 3328440..3329636 Desulfovibrio vulgaris RCH1 12868800 YP_005703707.1 CDS Deval_2927 NC_017310.1 3329929 3330783 D KEGG: dde:Dde_3181 precorrin-3 methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-3B C(17)-methyltransferase 3329929..3330783 Desulfovibrio vulgaris RCH1 12868801 YP_005703708.1 CDS Deval_2928 NC_017310.1 3331067 3331456 D PFAM: Cytochrome c, class III, conserved region; KEGG: dde:Dde_3182 cytochrome c3; cytochrome c, class III, conserved region 3331067..3331456 Desulfovibrio vulgaris RCH1 12868802 YP_005703709.1 CDS Deval_2929 NC_017310.1 3331634 3333649 D KEGG: dde:Dde_3183 hypothetical protein; hypothetical protein 3331634..3333649 Desulfovibrio vulgaris RCH1 12868803 YP_005703710.1 CDS Deval_2930 NC_017310.1 3333845 3334021 D KEGG: dde:Dde_3184 hypothetical protein; hypothetical protein 3333845..3334021 Desulfovibrio vulgaris RCH1 12868804 YP_005703711.1 CDS Deval_2931 NC_017310.1 3334018 3334794 D KEGG: dde:Dde_3185 demethylmenaquinone methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 3334018..3334794 Desulfovibrio vulgaris RCH1 12868805 YP_005703712.1 CDS Deval_2932 NC_017310.1 3335061 3335264 R PFAM: Protein of unknown function DUF2065; KEGG: dsa:Desal_0760 hypothetical protein; hypothetical protein complement(3335061..3335264) Desulfovibrio vulgaris RCH1 12868806 YP_005703713.1 CDS Deval_2933 NC_017310.1 3335398 3336720 D KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 3335398..3336720 Desulfovibrio vulgaris RCH1 12868807 YP_005703714.1 CDS Deval_2934 NC_017310.1 3336836 3336964 D KEGG: mlu:Mlut_05980 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 3336836..3336964 Desulfovibrio vulgaris RCH1 12868808 YP_005703715.1 CDS Deval_2935 NC_017310.1 3336961 3337671 D KEGG: dde:Dde_3188 hypothetical protein; TIGRFAM: futalosine nucleosidase; PFAM: purine or other phosphorylase family 1; futalosine nucleosidase 3336961..3337671 Desulfovibrio vulgaris RCH1 12868809 YP_005703716.1 CDS Deval_2936 NC_017310.1 3337692 3338657 D PFAM: Polyprenyl synthetase; KEGG: dde:Dde_3189 trans-hexaprenyltranstransferase; polyprenyl synthetase 3337692..3338657 Desulfovibrio vulgaris RCH1 12868810 YP_005703717.1 CDS Deval_2937 NC_017310.1 3338689 3341190 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; PAS fold domain protein; KEGG: dde:Dde_3190 diguanylate cyclase; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 3338689..3341190 Desulfovibrio vulgaris RCH1 12868811 YP_005703718.1 CDS Deval_2938 NC_017310.1 3341276 3344257 D KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; Phosphoribosylformylglycinamidine synthase 3341276..3344257 Desulfovibrio vulgaris RCH1 12868812 YP_005703719.1 CDS Deval_2939 NC_017310.1 3344719 3346728 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: dma:DMR_35850 methyl-accepting chemotaxis protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3344719..3346728 Desulfovibrio vulgaris RCH1 12868813 YP_005703720.1 CDS Deval_2940 NC_017310.1 3347069 3347449 D KEGG: dds:Ddes_2010 desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; desulfoferrodoxin 3347069..3347449 Desulfovibrio vulgaris RCH1 12868814 YP_005703721.1 CDS Deval_2941 NC_017310.1 3347466 3347624 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3194 rubredoxin; rubredoxin-type Fe(Cys)4 protein 3347466..3347624 Desulfovibrio vulgaris RCH1 12868815 YP_005703722.1 CDS Deval_2942 NC_017310.1 3347756 3348964 D PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase; flavodoxin/nitric oxide synthase 3347756..3348964 Desulfovibrio vulgaris RCH1 12868816 YP_005703723.1 CDS Deval_2943 NC_017310.1 3349292 3349978 R KEGG: dds:Ddes_0020 hypothetical protein; hypothetical protein complement(3349292..3349978) Desulfovibrio vulgaris RCH1 12868817 YP_005703724.1 CDS Deval_2944 NC_017310.1 3350188 3350475 D KEGG: dde:Dde_0125 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 3350188..3350475 Desulfovibrio vulgaris RCH1 12868818 YP_005703725.1 CDS Deval_2945 NC_017310.1 3350624 3351334 R PFAM: NLP/P60 protein; KEGG: dds:Ddes_0021 NLP/P60 protein; NLP/P60 protein complement(3350624..3351334) Desulfovibrio vulgaris RCH1 12868819 YP_005703726.1 CDS Deval_2946 NC_017310.1 3351406 3352701 R PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein; Fmu (Sun) domain-containing protein complement(3351406..3352701) Desulfovibrio vulgaris RCH1 12868820 YP_005703727.1 CDS Deval_2947 NC_017310.1 3352833 3354500 D KEGG: dde:Dde_0121 hypothetical protein; hypothetical protein 3352833..3354500 Desulfovibrio vulgaris RCH1 12867369 YP_005703728.1 CDS Deval_2948 NC_017310.1 3354578 3355750 D PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dds:Ddes_1476 pseudouridine synthase; pseudouridine synthase 3354578..3355750 Desulfovibrio vulgaris RCH1 12867370 YP_005703729.1 CDS Deval_2949 NC_017310.1 3355747 3356907 D PFAM: glycosyl transferase group 1; KEGG: dsa:Desal_2046 glycosyl transferase group 1; group 1 glycosyl transferase 3355747..3356907 Desulfovibrio vulgaris RCH1 12867371 YP_005703730.1 CDS Deval_2950 NC_017310.1 3357157 3358068 R TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding; excisionase family DNA binding domain-containing protein complement(3357157..3358068) Desulfovibrio vulgaris RCH1 12867372 YP_005703731.1 CDS Deval_2951 NC_017310.1 3358323 3359798 D KEGG: dde:Dde_0062 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; ribosome-associated GTPase EngA 3358323..3359798 Desulfovibrio vulgaris RCH1 12867373 YP_005703732.1 CDS Deval_2952 NC_017310.1 3359883 3361271 R KEGG: dds:Ddes_1878 putative lipoprotein; putative lipoprotein complement(3359883..3361271) Desulfovibrio vulgaris RCH1 12867374 YP_005703733.1 CDS Deval_2953 NC_017310.1 3361268 3362419 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: lip:LI0914 D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin complement(3361268..3362419) Desulfovibrio vulgaris RCH1 12867375 YP_005703734.1 CDS Deval_2954 NC_017310.1 3362700 3363623 D KEGG: dde:Dde_0065 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase 3362700..3363623 Desulfovibrio vulgaris RCH1 12867376 YP_005703735.1 CDS Deval_2955 NC_017310.1 3363778 3365628 D TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; KEGG: dde:Dde_0066 DNA polymerase III, tau subunit; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 3363778..3365628 Desulfovibrio vulgaris RCH1 12867377 YP_005703736.1 CDS Deval_2956 NC_017310.1 3365625 3365936 D PFAM: Uncharacterised protein family UPF0133; KEGG: dds:Ddes_2146 hypothetical protein; hypothetical protein 3365625..3365936 Desulfovibrio vulgaris RCH1 12867378 YP_005703737.1 CDS Deval_2957 NC_017310.1 3365947 3366552 D KEGG: dde:Dde_0068 DNA replication and repair protein RecR; TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; recombination protein RecR 3365947..3366552 Desulfovibrio vulgaris RCH1 12867379 YP_005703738.1 CDS Deval_2958 NC_017310.1 3366955 3368016 D KEGG: dde:Dde_0075 hypothetical protein; hypothetical protein 3366955..3368016 Desulfovibrio vulgaris RCH1 12867380 YP_005703739.1 CDS Deval_2959 NC_017310.1 3368254 3369090 D KEGG: dde:Dde_0074 TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 3368254..3369090 Desulfovibrio vulgaris RCH1 12867381 YP_005703740.1 CDS Deval_2960 NC_017310.1 3369405 3370367 R KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit, putative; DNA polymerase III subunit delta' complement(3369405..3370367) Desulfovibrio vulgaris RCH1 12867382 YP_005703741.1 CDS Deval_2961 NC_017310.1 3370374 3371654 R SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: dde:Dde_0176 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; adenylosuccinate synthetase complement(3370374..3371654) Desulfovibrio vulgaris RCH1 12867383 YP_005703742.1 CDS Deval_2962 NC_017310.1 3371897 3373342 D PFAM: Lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain-containing protein; lytic transglycosylase 3371897..3373342 Desulfovibrio vulgaris RCH1 12867384 YP_005703743.1 CDS Deval_2963 NC_017310.1 3373259 3373624 R KEGG: dma:DMR_03260 hypothetical protein; hypothetical protein complement(3373259..3373624) Desulfovibrio vulgaris RCH1 12867385 YP_005703744.1 CDS Deval_2964 NC_017310.1 3373897 3375177 D PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase 3373897..3375177 Desulfovibrio vulgaris RCH1 12867386 YP_005703745.1 CDS Deval_2965 NC_017310.1 3375186 3377282 D PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein; ribonuclease II 3375186..3377282 Desulfovibrio vulgaris RCH1 12867387 YP_005703746.1 CDS Deval_2966 NC_017310.1 3377304 3378287 D PFAM: protein of unknown function DUF205; KEGG: dde:Dde_0172 membrane protein; hypothetical protein 3377304..3378287 Desulfovibrio vulgaris RCH1 12867388 YP_005703747.1 CDS Deval_2967 NC_017310.1 3378420 3379868 D KEGG: dde:Dde_0171 L-threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 3378420..3379868 Desulfovibrio vulgaris RCH1 12867389 YP_005703748.1 CDS Deval_2968 NC_017310.1 3380841 3382550 D KEGG: dde:Dde_0374 rhodanese-like protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3380841..3382550 Desulfovibrio vulgaris RCH1 12867390 YP_005703749.1 CDS Deval_2969 NC_017310.1 3382937 3383155 D KEGG: ptr:460375 bassoon (presynaptic cytomatrix protein); hypothetical protein 3382937..3383155 Desulfovibrio vulgaris RCH1 12867391 YP_005703750.1 CDS Deval_2970 NC_017310.1 3383423 3386077 R KEGG: dds:Ddes_1565 pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; pyruvate, water dikinase complement(3383423..3386077) Desulfovibrio vulgaris RCH1 12867392 YP_005703751.1 CDS Deval_2971 NC_017310.1 3386094 3386459 R KEGG: dds:Ddes_1566 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(3386094..3386459) Desulfovibrio vulgaris RCH1 12867393 YP_005703752.1 CDS Deval_2972 NC_017310.1 3386477 3388174 R KEGG: dds:Ddes_1567 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; integral membrane sensor signal transduction histidine kinase complement(3386477..3388174) Desulfovibrio vulgaris RCH1 12867394 YP_005703753.1 CDS Deval_2973 NC_017310.1 3388860 3389288 R KEGG: drt:Dret_1987 hypothetical protein; hypothetical protein complement(3388860..3389288) Desulfovibrio vulgaris RCH1 12867395 YP_005703754.1 CDS Deval_2974 NC_017310.1 3389540 3390160 R PFAM: isochorismatase hydrolase; KEGG: gur:Gura_1197 isochorismatase hydrolase; isochorismatase hydrolase complement(3389540..3390160) Desulfovibrio vulgaris RCH1 12867396 YP_005703755.1 CDS Deval_2975 NC_017310.1 3390196 3391398 R KEGG: dsa:Desal_3086 hypothetical protein; hypothetical protein complement(3390196..3391398) Desulfovibrio vulgaris RCH1 12867397 YP_005703756.1 CDS Deval_2976 NC_017310.1 3391469 3392848 R KEGG: dds:Ddes_0853 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(3391469..3392848) Desulfovibrio vulgaris RCH1 12867398 YP_005703757.1 CDS Deval_2977 NC_017310.1 3392845 3394398 R KEGG: dds:Ddes_0852 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase complement(3392845..3394398) Desulfovibrio vulgaris RCH1 12867399 YP_005703758.1 CDS Deval_2978 NC_017310.1 3394399 3395742 R PFAM: phosphoglucose isomerase (PGI); KEGG: dde:Dde_3597 glucose-6-phosphate isomerase; phosphoglucose isomerase complement(3394399..3395742) Desulfovibrio vulgaris RCH1 12867400 YP_005703759.1 CDS Deval_2979 NC_017310.1 3395829 3397001 R PFAM: aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase; class I and II aminotransferase complement(3395829..3397001) Desulfovibrio vulgaris RCH1 12867401 YP_005703760.1 CDS Deval_2980 NC_017310.1 3397241 3397996 D KEGG: dde:Dde_3594 sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; sugar fermentation stimulation protein 3397241..3397996 Desulfovibrio vulgaris RCH1 12867402 YP_005703761.1 CDS Deval_2981 NC_017310.1 3398036 3398458 R KEGG: dde:Dde_0387 hypothetical protein; hypothetical protein complement(3398036..3398458) Desulfovibrio vulgaris RCH1 12867403 YP_005703762.1 CDS Deval_2982 NC_017310.1 3398469 3398798 R KEGG: dde:Dde_0386 hypothetical protein; hypothetical protein complement(3398469..3398798) Desulfovibrio vulgaris RCH1 12867404 YP_005703763.1 CDS Deval_2983 NC_017310.1 3398800 3399483 R PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_0385 flagellar basal body-associated protein, putative; flagellar basal body-associated protein FliL complement(3398800..3399483) Desulfovibrio vulgaris RCH1 12867405 YP_005703764.1 CDS Deval_2984 NC_017310.1 3399559 3399939 R KEGG: dde:Dde_0384 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(3399559..3399939) Desulfovibrio vulgaris RCH1 12867406 YP_005703765.1 CDS Deval_2985 NC_017310.1 3399962 3400759 R KEGG: dds:Ddes_0325 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; FliA/WhiG subfamily RNA polymerase sigma-28 subunit complement(3399962..3400759) Desulfovibrio vulgaris RCH1 12867407 YP_005703766.1 CDS Deval_2986 NC_017310.1 3400713 3401528 R KEGG: dde:Dde_0382 flagellar synthesis regulator FleN; flagellar synthesis regulator FleN complement(3400713..3401528) Desulfovibrio vulgaris RCH1 12867408 YP_005703767.1 CDS Deval_2987 NC_017310.1 3401540 3402637 R TIGRFAM: flagellar biosynthetic protein FlhF; KEGG: dds:Ddes_0327 GTP-binding signal recognition particle SRP54 G-domain protein; flagellar biosynthetic protein FlhF complement(3401540..3402637) Desulfovibrio vulgaris RCH1 12867409 YP_005703768.1 CDS Deval_2988 NC_017310.1 3402637 3404748 R KEGG: dde:Dde_0380 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; flagellar biosynthesis protein FlhA complement(3402637..3404748) Desulfovibrio vulgaris RCH1 12867410 YP_005703769.1 CDS Deval_2989 NC_017310.1 3404824 3405897 R KEGG: dde:Dde_0379 flagellar biosynthesis protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; flagellar biosynthetic protein FlhB complement(3404824..3405897) Desulfovibrio vulgaris RCH1 12867411 YP_005703770.1 CDS Deval_2990 NC_017310.1 3406022 3406813 R KEGG: dde:Dde_0378 flagellar biosynthetic protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; flagellar biosynthetic protein FliR complement(3406022..3406813) Desulfovibrio vulgaris RCH1 12867412 YP_005703771.1 CDS Deval_2991 NC_017310.1 3406918 3407520 D KEGG: dde:Dde_0377 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase 3406918..3407520 Desulfovibrio vulgaris RCH1 12867413 YP_005703772.1 CDS Deval_2992 NC_017310.1 3407886 3409529 D KEGG: dde:Dde_0376 GTP-binding protein HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; GTP-binding proten HflX 3407886..3409529 Desulfovibrio vulgaris RCH1 12867414 YP_005703773.1 CDS Deval_2993 NC_017310.1 3410007 3412670 R KEGG: dds:Ddes_1568 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; pyruvate, water dikinase complement(3410007..3412670) Desulfovibrio vulgaris RCH1 12867415 YP_005703774.1 CDS Deval_2994 NC_017310.1 3412708 3413112 R KEGG: dds:Ddes_0018 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(3412708..3413112) Desulfovibrio vulgaris RCH1 12867416 YP_005703775.1 CDS Deval_2995 NC_017310.1 3413337 3414002 R KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; phosphoesterase PA-phosphatase-like protein complement(3413337..3414002) Desulfovibrio vulgaris RCH1 12867417 YP_005703776.1 CDS Deval_2996 NC_017310.1 3414020 3414925 R PFAM: Peptidase M23; KEGG: dde:Dde_0243 M24/M37 family peptidase; peptidase M23 complement(3414020..3414925) Desulfovibrio vulgaris RCH1 12867418 YP_005703777.1 CDS Deval_2997 NC_017310.1 3415023 3415769 R PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein; PP-loop domain-containing protein complement(3415023..3415769) Desulfovibrio vulgaris RCH1 12867419 YP_005703778.1 CDS Deval_2998 NC_017310.1 3416172 3416405 D KEGG: dds:Ddes_2161 DNA-directed RNA polymerase, omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega 3416172..3416405 Desulfovibrio vulgaris RCH1 12867420 YP_005703779.1 CDS Deval_2999 NC_017310.1 3416418 3417548 D TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; KEGG: dde:Dde_0248 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ 3416418..3417548 Desulfovibrio vulgaris RCH1 12867421 YP_005703780.1 CDS Deval_3000 NC_017310.1 3417925 3418416 D KEGG: lip:LI0307 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; GreA/GreB family elongation factor 3417925..3418416 Desulfovibrio vulgaris RCH1 12867422 YP_005703781.1 CDS Deval_3001 NC_017310.1 3418933 3420558 D KEGG: sfu:Sfum_3923 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 3418933..3420558 Desulfovibrio vulgaris RCH1 12867423 YP_005703782.1 CDS Deval_3002 NC_017310.1 3420600 3421769 D KEGG: sfu:Sfum_3921 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3420600..3421769 Desulfovibrio vulgaris RCH1 12867424 YP_005703783.1 CDS Deval_3003 NC_017310.1 3421798 3424941 D KEGG: sfu:Sfum_3922 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3421798..3424941 Desulfovibrio vulgaris RCH1 12867425 YP_005703784.1 CDS Deval_3004 NC_017310.1 3424949 3425629 D KEGG: swd:Swoo_0689 hypothetical protein; hypothetical protein 3424949..3425629 Desulfovibrio vulgaris RCH1 12867426 YP_005703785.1 CDS Deval_3005 NC_017310.1 3426242 3426943 R KEGG: dde:Dde_3553 hypothetical protein; hypothetical protein complement(3426242..3426943) Desulfovibrio vulgaris RCH1 12867428 YP_005703786.1 CDS Deval_3006 NC_017310.1 3427294 3427833 R PFAM: HPP family protein; KEGG: dma:DMR_12600 hypothetical membrane protein; HPP family protein complement(3427294..3427833) Desulfovibrio vulgaris RCH1 12867429 YP_005703787.1 CDS Deval_3007 NC_017310.1 3428183 3429448 D PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase, putative; AMP-dependent synthetase and ligase 3428183..3429448 Desulfovibrio vulgaris RCH1 12867430 YP_005703788.1 CDS Deval_3008 NC_017310.1 3429439 3430803 D KEGG: dma:DMR_16980 hypothetical protein; PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein; hypothetical protein 3429439..3430803 Desulfovibrio vulgaris RCH1 12867431 YP_005703789.1 CDS Deval_3009 NC_017310.1 3430839 3431237 D PFAM: Uncharacterised protein family UPF0150; KEGG: ccs:CCNA_03289 hypothetical protein; hypothetical protein 3430839..3431237 Desulfovibrio vulgaris RCH1 12867432 YP_005703790.1 CDS Deval_3010 NC_017310.1 3431333 3432430 D TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; formamidopyrimidine-DNA glycosylase 3431333..3432430 Desulfovibrio vulgaris RCH1 12867433 YP_005703791.1 CDS Deval_3011 NC_017310.1 3432702 3435581 R TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dds:Ddes_1798 ComEC/Rec2-related protein; SMART: beta-lactamase domain protein; ComEC/Rec2-like protein complement(3432702..3435581) Desulfovibrio vulgaris RCH1 12867434 YP_005703792.1 CDS Deval_3012 NC_017310.1 3435760 3437013 R KEGG: dde:Dde_0546 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3435760..3437013) Desulfovibrio vulgaris RCH1 12867435 YP_005703793.1 CDS Deval_3014 NC_017310.1 3437965 3438738 D TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: dde:Dde_0551 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 3437965..3438738 Desulfovibrio vulgaris RCH1 12867439 YP_005703794.1 CDS Deval_3015 NC_017310.1 3439001 3439195 R KEGG: dde:Dde_0552 hypothetical protein; hypothetical protein complement(3439001..3439195) Desulfovibrio vulgaris RCH1 12867440 YP_005703795.1 CDS Deval_3016 NC_017310.1 3439460 3440110 D KEGG: dba:Dbac_3066 fumarate reductase respiratory complex transmembrane subunit; fumarate reductase respiratory complex transmembrane subunit 3439460..3440110 Desulfovibrio vulgaris RCH1 12867441 YP_005703796.1 CDS Deval_3017 NC_017310.1 3440120 3441958 D TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: dma:DMR_34280 fumarate reductase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 3440120..3441958 Desulfovibrio vulgaris RCH1 12867442 YP_005703797.1 CDS Deval_3018 NC_017310.1 3441961 3442704 D KEGG: dma:DMR_05780 fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 3441961..3442704 Desulfovibrio vulgaris RCH1 12867443 YP_005703798.1 CDS Deval_3019 NC_017310.1 3443090 3443929 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: dma:DMR_34300 L-tartrate dehydratase alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 3443090..3443929 Desulfovibrio vulgaris RCH1 12867444 YP_005703799.1 CDS Deval_3020 NC_017310.1 3443929 3444480 D KEGG: dma:DMR_34310 L-tartrate dehydratase beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 3443929..3444480 Desulfovibrio vulgaris RCH1 12867445 YP_005703800.1 CDS Deval_3021 NC_017310.1 3444744 3445556 R KEGG: dde:Dde_3063 hypothetical protein; hypothetical protein complement(3444744..3445556) Desulfovibrio vulgaris RCH1 12867447 YP_005703801.1 CDS Deval_3022 NC_017310.1 3445586 3446197 D KEGG: dde:Dde_1333 hypothetical protein; hypothetical protein 3445586..3446197 Desulfovibrio vulgaris RCH1 12867448 YP_005703802.1 CDS Deval_3023 NC_017310.1 3446278 3447540 D KEGG: dde:Dde_0554 hypothetical protein; hypothetical protein 3446278..3447540 Desulfovibrio vulgaris RCH1 12867449 YP_005703803.1 CDS Deval_3024 NC_017310.1 3447668 3450187 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dba:Dbac_1221 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 3447668..3450187 Desulfovibrio vulgaris RCH1 12867450 YP_005703804.1 CDS Deval_3025 NC_017310.1 3450448 3451473 R KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II complement(3450448..3451473) Desulfovibrio vulgaris RCH1 12867451 YP_005703805.1 CDS Deval_3026 NC_017310.1 3451519 3452820 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(3451519..3452820) Desulfovibrio vulgaris RCH1 12867452 YP_005703806.1 CDS Deval_3027 NC_017310.1 3453371 3453994 R KEGG: dde:Dde_3772 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein complement(3453371..3453994) Desulfovibrio vulgaris RCH1 12867453 YP_005703807.1 CDS Deval_3028 NC_017310.1 3453978 3454370 R KEGG: dde:Dde_3773 hypothetical protein; hypothetical protein complement(3453978..3454370) Desulfovibrio vulgaris RCH1 12867454 YP_005703808.1 CDS Deval_3029 NC_017310.1 3454370 3455038 R KEGG: dds:Ddes_0888 protein of unknown function UPF0153; hypothetical protein complement(3454370..3455038) Desulfovibrio vulgaris RCH1 12867455 YP_005703809.1 CDS Deval_3030 NC_017310.1 3455289 3455477 R KEGG: dde:Dde_3775 ferredoxin I; ferredoxin I complement(3455289..3455477) Desulfovibrio vulgaris RCH1 12867456 YP_005703810.1 CDS Deval_3031 NC_017310.1 3455659 3457011 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3776 PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF domain protein; HtrA2 peptidase complement(3455659..3457011) Desulfovibrio vulgaris RCH1 12867457 YP_005703811.1 CDS Deval_3032 NC_017310.1 3457357 3458430 D TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: dde:Dde_3777 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3457357..3458430 Desulfovibrio vulgaris RCH1 12867458 YP_005703812.1 CDS Deval_3033 NC_017310.1 3458567 3459553 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dma:DMR_44920 putative ABC transporter ATP-binding protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 3458567..3459553 Desulfovibrio vulgaris RCH1 12867459 YP_005703813.1 CDS Deval_3034 NC_017310.1 3459633 3460133 D KEGG: dde:Dde_0060 hypothetical protein; hypothetical protein 3459633..3460133 Desulfovibrio vulgaris RCH1 12867460 YP_005703814.1 CDS Deval_3035 NC_017310.1 3460371 3461270 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: dde:Dde_0059 ADP-ribosylglycohydrolase family protein; ADP-ribosylation/Crystallin J1 complement(3460371..3461270) Desulfovibrio vulgaris RCH1 12867461 YP_005703815.1 CDS Deval_3036 NC_017310.1 3461829 3462059 R KEGG: pno:SNOG_00683 hypothetical protein; hypothetical protein complement(3461829..3462059) Desulfovibrio vulgaris RCH1 12867462 YP_005703816.1 CDS Deval_3037 NC_017310.1 3462287 3462520 D KEGG: dde:Dde_0096 hypothetical protein; hypothetical protein 3462287..3462520 Desulfovibrio vulgaris RCH1 12867463 YP_005703817.1 CDS Deval_3038 NC_017310.1 3462681 3464312 R KEGG: dma:DMR_20020 L-lactate permease; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport complement(3462681..3464312) Desulfovibrio vulgaris RCH1 12867464 YP_005703818.1 CDS Deval_3039 NC_017310.1 3465075 3466760 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(3465075..3466760) Desulfovibrio vulgaris RCH1 12867465 YP_005703819.1 CDS Deval_3040 NC_017310.1 3467351 3468478 D KEGG: dma:DMR_46020 hypothetical protein; hypothetical protein 3467351..3468478 Desulfovibrio vulgaris RCH1 12867466 YP_005703820.1 CDS Deval_3041 NC_017310.1 3468442 3470076 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: dma:DMR_46030 glutamate synthase large subunit; ferredoxin-dependent glutamate synthase 3468442..3470076 Desulfovibrio vulgaris RCH1 12867467 YP_005703821.1 CDS Deval_3042 NC_017310.1 3470155 3472485 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase alpha subunit domain protein; KEGG: dma:DMR_46040 nucleotide-disulphide oxidoreductase family protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3470155..3472485 Desulfovibrio vulgaris RCH1 12867468 YP_005703822.1 CDS Deval_3043 NC_017310.1 3472893 3474536 D PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: hoh:Hoch_5290 thiamine pyrophosphate protein domain protein TPP-binding protein; thiamine pyrophosphate TPP-binding domain-containing protein 3472893..3474536 Desulfovibrio vulgaris RCH1 12867469 YP_005703823.1 CDS Deval_3044 NC_017310.1 3474554 3475948 D PFAM: Aldehyde Dehydrogenase; KEGG: cps:CPS_3359 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 3474554..3475948 Desulfovibrio vulgaris RCH1 12867470 YP_005703824.1 CDS Deval_3045 NC_017310.1 3476236 3476883 R KEGG: dde:Dde_1696 hemolysin III family channel protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; hemolysin III family channel protein complement(3476236..3476883) Desulfovibrio vulgaris RCH1 12867471 YP_005703825.1 CDS Deval_3046 NC_017310.1 3477074 3477601 D KEGG: dsa:Desal_3329 hypothetical protein; hypothetical protein 3477074..3477601 Desulfovibrio vulgaris RCH1 12867472 YP_005703826.1 CDS Deval_3047 NC_017310.1 3477629 3478888 R KEGG: dds:Ddes_1135 aromatic amino acid transporter; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease; aromatic amino acid transporter complement(3477629..3478888) Desulfovibrio vulgaris RCH1 12867473 YP_005703827.1 CDS Deval_3048 NC_017310.1 3479133 3479951 R KEGG: pag:PLES_47301 putative universal stress protein; hypothetical protein complement(3479133..3479951) Desulfovibrio vulgaris RCH1 12867474 YP_005703828.1 CDS Deval_3049 NC_017310.1 3479902 3480972 R PFAM: protein of unknown function DUF81; KEGG: dba:Dbac_2673 protein of unknown function DUF81; hypothetical protein complement(3479902..3480972) Desulfovibrio vulgaris RCH1 12867475 YP_005703829.1 CDS Deval_3050 NC_017310.1 3480986 3481279 R KEGG: dba:Dbac_2672 hypothetical protein; hypothetical protein complement(3480986..3481279) Desulfovibrio vulgaris RCH1 12867476 YP_005703830.1 CDS Deval_3051 NC_017310.1 3481341 3481883 R KEGG: dba:Dbac_2670 hypothetical protein; hypothetical protein complement(3481341..3481883) Desulfovibrio vulgaris RCH1 12867477 YP_005703831.1 CDS Deval_3052 NC_017310.1 3481904 3482083 R KEGG: dba:Dbac_2669 hypothetical protein; hypothetical protein complement(3481904..3482083) Desulfovibrio vulgaris RCH1 12867478 YP_005703832.1 CDS Deval_3053 NC_017310.1 3482363 3484411 D KEGG: dba:Dbac_2668 response regulator receiver protein; PFAM: response regulator receiver; AAA ATPase central domain protein; SMART: response regulator receiver; AAA ATPase; response regulator receiver protein 3482363..3484411 Desulfovibrio vulgaris RCH1 12867479 YP_005703833.1 CDS Deval_3054 NC_017310.1 3484408 3485886 D KEGG: dba:Dbac_2667 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 3484408..3485886 Desulfovibrio vulgaris RCH1 12867480 YP_005703834.1 CDS Deval_3055 NC_017310.1 3485883 3487238 D KEGG: dba:Dbac_2666 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 3485883..3487238 Desulfovibrio vulgaris RCH1 12867481 YP_005703835.1 CDS Deval_3056 NC_017310.1 3487999 3488562 D KEGG: dde:Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3487999..3488562 Desulfovibrio vulgaris RCH1 12867483 YP_005703836.1 CDS Deval_3057 NC_017310.1 3488669 3489388 D KEGG: dde:Dde_0151 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 3488669..3489388 Desulfovibrio vulgaris RCH1 12867484 YP_005703837.1 CDS Deval_3058 NC_017310.1 3489420 3489752 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: pnu:Pnuc_0446 excinuclease ABC subunit C; Excinuclease ABC C subunit domain-containing protein 3489420..3489752 Desulfovibrio vulgaris RCH1 12867485 YP_005703838.1 CDS Deval_3059 NC_017310.1 3489740 3491338 D KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 3489740..3491338 Desulfovibrio vulgaris RCH1 12867486 YP_005703839.1 CDS Deval_3060 NC_017310.1 3491838 3492293 D KEGG: tmz:Tmz1t_4048 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 3491838..3492293 Desulfovibrio vulgaris RCH1 12867487 YP_005703840.1 CDS Deval_3061 NC_017310.1 3492324 3493214 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aac:Aaci_0821 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3492324..3493214) Desulfovibrio vulgaris RCH1 12867488 YP_005703841.1 CDS Deval_3062 NC_017310.1 3493314 3493556 D KEGG: tcr:506833.60 UV excision repair RAD23-like protein; hypothetical protein 3493314..3493556 Desulfovibrio vulgaris RCH1 12867489 YP_005703842.1 CDS Deval_3063 NC_017310.1 3493886 3495862 R PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase; peptidase U32 complement(3493886..3495862) Desulfovibrio vulgaris RCH1 12867490 YP_005703843.1 CDS Deval_3064 NC_017310.1 3496243 3497061 D PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_0057 dihydroorotate oxidase B, electron transfer subunit; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein 3496243..3497061 Desulfovibrio vulgaris RCH1 12867491 YP_005703844.1 CDS Deval_3065 NC_017310.1 3497070 3497993 D KEGG: dde:Dde_0056 dihydroorotate oxidase B, catalytic subunit; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; dihydroorotate dehydrogenase family protein 3497070..3497993 Desulfovibrio vulgaris RCH1 12867492 YP_005703845.1 CDS Deval_3066 NC_017310.1 3498177 3498347 R manually curated; hypothetical protein complement(3498177..3498347) Desulfovibrio vulgaris RCH1 12867493 YP_005703846.1 CDS Deval_3067 NC_017310.1 3498442 3501462 D KEGG: dde:Dde_0054 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 3498442..3501462 Desulfovibrio vulgaris RCH1 12867494 YP_005703847.1 CDS Deval_3068 NC_017310.1 3501721 3502137 R KEGG: ypp:YPDSF_1002 phage-related membrane protein; hypothetical protein complement(3501721..3502137) Desulfovibrio vulgaris RCH1 12867495 YP_005703848.1 CDS Deval_3069 NC_017310.1 3502371 3502829 D PFAM: Protein of unknown function DUF2318, membrane; KEGG: dma:DMR_19610 hypothetical protein; hypothetical protein 3502371..3502829 Desulfovibrio vulgaris RCH1 12867496 YP_005703849.1 CDS Deval_3070 NC_017310.1 3502826 3504292 D PFAM: protein of unknown function DUF214; KEGG: dds:Ddes_2105 protein of unknown function DUF214; hypothetical protein 3502826..3504292 Desulfovibrio vulgaris RCH1 12867497 YP_005703850.1 CDS Deval_3071 NC_017310.1 3504467 3505177 D KEGG: dds:Ddes_2106 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3504467..3505177 Desulfovibrio vulgaris RCH1 12867498 YP_005703851.1 CDS Deval_3072 NC_017310.1 3505569 3505901 R PFAM: small multidrug resistance protein; KEGG: dde:Dde_2405 SMR family multidrug efflux pump; small multidrug resistance protein complement(3505569..3505901) Desulfovibrio vulgaris RCH1 12867499 YP_005703852.1 CDS Deval_3073 NC_017310.1 3505898 3506281 R PFAM: small multidrug resistance protein; KEGG: dds:Ddes_1812 small multidrug resistance protein; small multidrug resistance protein complement(3505898..3506281) Desulfovibrio vulgaris RCH1 12867500 YP_005703853.1 CDS Deval_3074 NC_017310.1 3506603 3506932 R manually curated; KEGG: blj:BLD_0467 superfamily II RNA helicase; hypothetical protein complement(3506603..3506932) Desulfovibrio vulgaris RCH1 12867501 YP_005703854.1 CDS Deval_3075 NC_017310.1 3507110 3507385 D KEGG: dma:DMR_28320 hypothetical protein; hypothetical protein 3507110..3507385 Desulfovibrio vulgaris RCH1 12867502 YP_005703855.1 CDS Deval_3076 NC_017310.1 3507397 3509655 D KEGG: dds:Ddes_1752 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating P-type ATPase 3507397..3509655 Desulfovibrio vulgaris RCH1 12867503 YP_005703856.1 CDS Deval_3077 NC_017310.1 3509652 3510110 D KEGG: eba:ebA616 hypothetical protein; hypothetical protein 3509652..3510110 Desulfovibrio vulgaris RCH1 12867504 YP_005703857.1 CDS Deval_3078 NC_017310.1 3510403 3511752 R KEGG: mxa:MXAN_0172 sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator complement(3510403..3511752) Desulfovibrio vulgaris RCH1 12867505 YP_005703858.1 CDS Deval_3079 NC_017310.1 3511749 3513530 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: fjo:Fjoh_1970 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(3511749..3513530) Desulfovibrio vulgaris RCH1 12867506 YP_005703859.1 CDS Deval_3080 NC_017310.1 3513527 3514666 R PFAM: Osmosensitive K channel His kinase sensor; UspA domain-containing protein; KEGG: mxa:MXAN_0167 osmosensitive K+ channel histidine kinase sensor subunit; osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD complement(3513527..3514666) Desulfovibrio vulgaris RCH1 12867507 YP_005703860.1 CDS Deval_3081 NC_017310.1 3514748 3515305 R TIGRFAM: potassium-transporting ATPase, C subunit; KEGG: mlo:mll3129 potassium-transporting atpase C chain, KdpC; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C complement(3514748..3515305) Desulfovibrio vulgaris RCH1 12867508 YP_005703861.1 CDS Deval_3082 NC_017310.1 3515315 3517351 R KEGG: aba:Acid345_0511 potassium-translocating P-type ATPase, B subunit; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; K+-transporting ATPase subunit B complement(3515315..3517351) Desulfovibrio vulgaris RCH1 12867509 YP_005703862.1 CDS Deval_3083 NC_017310.1 3517368 3519077 R TIGRFAM: potassium-transporting ATPase, A subunit; KEGG: mxa:MXAN_0164 potassium-transporting ATPase subunit A; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A complement(3517368..3519077) Desulfovibrio vulgaris RCH1 12867510 YP_005703863.1 CDS Deval_3084 NC_017310.1 3519718 3520134 D PFAM: TadE family protein; KEGG: dma:DMR_14170 hypothetical protein; TadE family protein 3519718..3520134 Desulfovibrio vulgaris RCH1 12867511 YP_005703864.1 CDS Deval_3085 NC_017310.1 3520131 3520550 D PFAM: TadE family protein; KEGG: xce:Xcel_1028 TadE family protein; TadE family protein 3520131..3520550 Desulfovibrio vulgaris RCH1 12867512 YP_005703865.1 CDS Deval_3086 NC_017310.1 3520562 3521731 D PFAM: Protein of unknown function DUF2134, membrane; KEGG: dma:DMR_14150 hypothetical protein; hypothetical protein 3520562..3521731 Desulfovibrio vulgaris RCH1 12867513 YP_005703866.1 CDS Deval_3087 NC_017310.1 3521809 3522099 R KEGG: cyt:cce_1889 hypothetical protein; hypothetical protein complement(3521809..3522099) Desulfovibrio vulgaris RCH1 12867514 YP_005703867.1 CDS Deval_3088 NC_017310.1 3522412 3522960 R PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein complement(3522412..3522960) Desulfovibrio vulgaris RCH1 12867515 YP_005703868.1 CDS Deval_3089 NC_017310.1 3522960 3523742 R PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative; thiamine pyrophosphate TPP-binding domain-containing protein complement(3522960..3523742) Desulfovibrio vulgaris RCH1 12867516 YP_005703869.1 CDS Deval_3090 NC_017310.1 3523742 3524815 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_0044 2-ketoisovalerate ferredoxin reductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(3523742..3524815) Desulfovibrio vulgaris RCH1 12867517 YP_005703870.1 CDS Deval_3091 NC_017310.1 3524819 3525052 R KEGG: dsa:Desal_3826 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3524819..3525052) Desulfovibrio vulgaris RCH1 12867518 YP_005703871.1 CDS Deval_3092 NC_017310.1 3525416 3526531 R KEGG: dde:Dde_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase complement(3525416..3526531) Desulfovibrio vulgaris RCH1 12867519 YP_005703872.1 CDS Deval_3093 NC_017310.1 3526644 3527213 D KEGG: lip:LI0583 hypothetical protein; hypothetical protein 3526644..3527213 Desulfovibrio vulgaris RCH1 12867520 YP_005703873.1 CDS Deval_3094 NC_017310.1 3527213 3528427 D TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: dde:Dde_0039 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3527213..3528427 Desulfovibrio vulgaris RCH1 12867521 YP_005703874.1 CDS Deval_3095 NC_017310.1 3528409 3529326 D KEGG: dde:Dde_0038 hypothetical protein; hypothetical protein 3528409..3529326 Desulfovibrio vulgaris RCH1 12867522 YP_005703875.1 CDS Deval_3096 NC_017310.1 3529795 3530550 D KEGG: dsa:Desal_3833 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; hypothetical protein 3529795..3530550 Desulfovibrio vulgaris RCH1 12867523 YP_005703876.1 CDS Deval_3097 NC_017310.1 3530598 3531605 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0033 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 3530598..3531605 Desulfovibrio vulgaris RCH1 12867524 YP_005703877.1 CDS Deval_3098 NC_017311.1 46 399 D KEGG: pmx:PERMA_1597 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 46..399 Desulfovibrio vulgaris RCH1 12293039 YP_005703878.1 CDS Deval_3099 NC_017311.1 1054 1974 R PFAM: UspA domain-containing protein; KEGG: sse:Ssed_1391 universal stress protein, UspA; UspA domain-containing protein complement(1054..1974) Desulfovibrio vulgaris RCH1 12293040 YP_005703879.1 CDS Deval_3100 NC_017311.1 2012 3007 R PFAM: CBS domain containing protein; MgtE integral membrane region; KEGG: psl:Psta_1776 CBS domain containing protein; CBS domain containing protein complement(2012..3007) Desulfovibrio vulgaris RCH1 12293041 YP_005703880.1 CDS Deval_3101 NC_017311.1 3457 5001 R KEGG: dsa:Desal_0437 nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB; Radical SAM domain protein complement(3457..5001) Desulfovibrio vulgaris RCH1 12293042 YP_005703881.1 CDS Deval_3102 NC_017311.1 5014 6528 R KEGG: dsa:Desal_0438 nitrogenase; PFAM: oxidoreductase/nitrogenase component 1; Nitrogenase complement(5014..6528) Desulfovibrio vulgaris RCH1 12293043 YP_005703882.1 CDS Deval_3103 NC_017311.1 6515 8401 R KEGG: dma:DMR_17520 nitrogenase MoFe cofactor biosynthesis protein; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase MoFe cofactor biosynthesis protein NifE complement(6515..8401) Desulfovibrio vulgaris RCH1 12293044 YP_005703883.1 CDS Deval_3104 NC_017311.1 8864 9166 R KEGG: sfu:Sfum_1014 ferredoxin, 2fe-2s; ferredoxin, 2fe-2s complement(8864..9166) Desulfovibrio vulgaris RCH1 12293045 YP_005703884.1 CDS Deval_3105 NC_017311.1 9357 10742 R TIGRFAM: nitrogenase molybdenum-iron protein beta chain; KEGG: cph:Cpha266_0740 nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein beta chain complement(9357..10742) Desulfovibrio vulgaris RCH1 12293046 YP_005703885.1 CDS Deval_3106 NC_017311.1 10779 12407 R KEGG: cpb:Cphamn1_1754 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein alpha chain complement(10779..12407) Desulfovibrio vulgaris RCH1 12293047 YP_005703886.1 CDS Deval_3107 NC_017311.1 12419 12814 R PFAM: nitrogen regulatory protein P-II; KEGG: plt:Plut_1530 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II complement(12419..12814) Desulfovibrio vulgaris RCH1 12293048 YP_005703887.1 CDS Deval_3108 NC_017311.1 12824 13150 R PFAM: nitrogen regulatory protein P-II; KEGG: cts:Ctha_1034 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(12824..13150) Desulfovibrio vulgaris RCH1 12293049 YP_005703888.1 CDS Deval_3109 NC_017311.1 13433 14266 R TIGRFAM: nitrogenase iron protein; KEGG: dba:Dbac_0834 nitrogenase iron protein; PFAM: NifH/frxC-family protein; nitrogenase iron protein complement(13433..14266) Desulfovibrio vulgaris RCH1 12292894 YP_005703889.1 CDS Deval_3110 NC_017311.1 15090 16178 D PFAM: pyruvate carboxyltransferase; KEGG: dsa:Desal_0448 pyruvate carboxyltransferase; pyruvate carboxyltransferase 15090..16178 Desulfovibrio vulgaris RCH1 12292895 YP_005703890.1 CDS Deval_3111 NC_017311.1 16545 16763 R KEGG: cfa:489657 spastic paraplegia 7 (pure and complicated autosomal recessive); hypothetical protein complement(16545..16763) Desulfovibrio vulgaris RCH1 12292896 YP_005703891.1 CDS Deval_3112 NC_017311.1 17324 19000 D KEGG: dma:DMR_14640 modification methylase; modification methylase 17324..19000 Desulfovibrio vulgaris RCH1 12292897 YP_005703892.1 CDS Deval_3113 NC_017311.1 19000 19740 D KEGG: dma:DMR_14630 type II restriction enzyme; PFAM: restriction endonuclease XhoI; Type II site-specific deoxyribonuclease 19000..19740 Desulfovibrio vulgaris RCH1 12292898 YP_005703893.1 CDS Deval_3114 NC_017311.1 19895 20818 R KEGG: dde:Dde_0824 CAAX amino terminal protease family protein; TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein; CAAX prenyl protease-related protein complement(19895..20818) Desulfovibrio vulgaris RCH1 12292899 YP_005703894.1 CDS Deval_3115 NC_017311.1 21188 22249 R PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0825 hypothetical protein; secretion protein HlyD family protein complement(21188..22249) Desulfovibrio vulgaris RCH1 12292900 YP_005703895.1 CDS Deval_3116 NC_017311.1 22258 22944 R KEGG: dde:Dde_0826 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related protein complement(22258..22944) Desulfovibrio vulgaris RCH1 12292901 YP_005703896.1 CDS Deval_3117 NC_017311.1 23043 24173 R PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative; protein of unknown function DUF214 complement(23043..24173) Desulfovibrio vulgaris RCH1 12292902 YP_005703897.1 CDS Deval_3118 NC_017311.1 24245 25798 R KEGG: dde:Dde_0820 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; response regulator receiver; putative two component, sigma54 specific, transcriptional regulator, Fis family complement(24245..25798) Desulfovibrio vulgaris RCH1 12292903 YP_005703898.1 CDS Deval_3119 NC_017311.1 26144 26554 D KEGG: afu:AF2138 phosphoserine phosphatase (SerB); hypothetical protein 26144..26554 Desulfovibrio vulgaris RCH1 12292904 YP_005703899.1 CDS Deval_3120 NC_017311.1 26675 27034 R PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein; type IV pilus assembly PilZ complement(26675..27034) Desulfovibrio vulgaris RCH1 12292905 YP_005703900.1 CDS Deval_3121 NC_017311.1 27878 28579 D PFAM: protein of unknown function DUF1555; KEGG: llk:LLKF_1729 cell surface protein with WxL domain; protein of unknown function DUF1555 27878..28579 Desulfovibrio vulgaris RCH1 12292906 YP_005703901.1 CDS Deval_3122 NC_017311.1 29274 30140 R PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein; protein of unknown function DUF1555 complement(29274..30140) Desulfovibrio vulgaris RCH1 12292907 YP_005703902.1 CDS Deval_3123 NC_017311.1 30265 31125 R PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein; protein of unknown function DUF1555 complement(30265..31125) Desulfovibrio vulgaris RCH1 12292908 YP_005703903.1 CDS Deval_3124 NC_017311.1 31279 31545 R KEGG: tgu:100220127 hypothetical protein LOC100220127; hypothetical protein complement(31279..31545) Desulfovibrio vulgaris RCH1 12292909 YP_005703904.1 CDS Deval_3125 NC_017311.1 31811 34780 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_0822 hypothetical protein; UBA/THIF-type NAD/FAD binding protein complement(31811..34780) Desulfovibrio vulgaris RCH1 12292910 YP_005703905.1 CDS Deval_3126 NC_017311.1 35067 35630 D KEGG: dde:Dde_0821 hypothetical protein; hypothetical protein 35067..35630 Desulfovibrio vulgaris RCH1 12292911 YP_005703906.1 CDS Deval_3127 NC_017311.1 35883 38543 D KEGG: dde:Dde_0828 TPR repeat-containing protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; PEP-CTERM system TPR-repeat lipoprotein 35883..38543 Desulfovibrio vulgaris RCH1 12292912 YP_005703907.1 CDS Deval_3128 NC_017311.1 38555 40201 D KEGG: gme:Gmet_2031 sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; sugar transferase, PEP-CTERM system associated; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 38555..40201 Desulfovibrio vulgaris RCH1 12292913 YP_005703908.1 CDS Deval_3129 NC_017311.1 40201 41007 D KEGG: dde:Dde_0830 capsular polysaccharide transport protein; TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; Soluble ligand binding domain; polysaccharide export protein, PEP-CTERM sytem-associated 40201..41007 Desulfovibrio vulgaris RCH1 12292914 YP_005703909.1 CDS Deval_3130 NC_017311.1 41008 42510 D KEGG: dde:Dde_0831 chain length determinant family protein; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; polysaccharide chain length determinant protein, PEP-CTERM locus subfamily 41008..42510 Desulfovibrio vulgaris RCH1 12292915 YP_005703910.1 CDS Deval_3131 NC_017311.1 42521 43639 D KEGG: dde:Dde_0832 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; capsular exopolysaccharide family 42521..43639 Desulfovibrio vulgaris RCH1 12292916 YP_005703911.1 CDS Deval_3132 NC_017311.1 43651 44970 D KEGG: dde:Dde_0833 ATPase; TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; secretion ATPase, PEP-CTERM locus subfamily 43651..44970 Desulfovibrio vulgaris RCH1 12292917 YP_005703912.1 CDS Deval_3133 NC_017311.1 45147 46469 D TIGRFAM: PEP-CTERM system associated protein; KEGG: dde:Dde_0834 putative lipoprotein; PEP-CTERM system associated protein 45147..46469 Desulfovibrio vulgaris RCH1 12292918 YP_005703913.1 CDS Deval_3134 NC_017311.1 46522 47373 D KEGG: dba:Dbac_2217 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; polysaccharide deactylase family protein, PEP-CTERM locus subfamily 46522..47373 Desulfovibrio vulgaris RCH1 12292919 YP_005703914.1 CDS Deval_3135 NC_017311.1 47366 48412 D TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein; FemAB-related protein, PEP-CTERM system-associated 47366..48412 Desulfovibrio vulgaris RCH1 12292920 YP_005703915.1 CDS Deval_3136 NC_017311.1 48409 50025 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dba:Dbac_2215 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 48409..50025 Desulfovibrio vulgaris RCH1 12292921 YP_005703916.1 CDS Deval_3137 NC_017311.1 50022 51470 D PFAM: glycosyl transferase family 2; KEGG: dba:Dbac_2214 glycosyl transferase family 2; glycosyl transferase family 2 50022..51470 Desulfovibrio vulgaris RCH1 12292922 YP_005703917.1 CDS Deval_3138 NC_017311.1 51546 52862 D KEGG: swi:Swit_2495 hypothetical protein; hypothetical protein 51546..52862 Desulfovibrio vulgaris RCH1 12292923 YP_005703918.1 CDS Deval_3139 NC_017311.1 52917 54314 D PFAM: O-antigen polymerase; KEGG: dba:Dbac_2212 O-antigen polymerase; O-antigen polymerase 52917..54314 Desulfovibrio vulgaris RCH1 12292924 YP_005703919.1 CDS Deval_3140 NC_017311.1 54318 55787 D PFAM: polysaccharide biosynthesis protein; KEGG: dba:Dbac_2211 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 54318..55787 Desulfovibrio vulgaris RCH1 12292925 YP_005703920.1 CDS Deval_3141 NC_017311.1 55809 57059 D PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2210 glycosyl transferase, group 1; glycosyl transferase group 1 55809..57059 Desulfovibrio vulgaris RCH1 12292926 YP_005703921.1 CDS Deval_3142 NC_017311.1 57056 58444 D PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2209 glycosyl transferase group 1; glycosyl transferase group 1 57056..58444 Desulfovibrio vulgaris RCH1 12292927 YP_005703922.1 CDS Deval_3143 NC_017311.1 58389 59294 D KEGG: dba:Dbac_2208 acetyltransferase; acetyltransferase 58389..59294 Desulfovibrio vulgaris RCH1 12292928 YP_005703923.1 CDS Deval_3144 NC_017311.1 59393 59527 D hypothetical protein 59393..59527 Desulfovibrio vulgaris RCH1 12292929 YP_005703924.1 CDS Deval_3145 NC_017311.1 59524 60132 D KEGG: dba:Dbac_2207 transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein 59524..60132 Desulfovibrio vulgaris RCH1 12292930 YP_005703925.1 CDS Deval_3146 NC_017311.1 60129 61529 D PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2206 glycosyl transferase group 1; glycosyl transferase group 1 60129..61529 Desulfovibrio vulgaris RCH1 12292931 YP_005703926.1 CDS Deval_3147 NC_017311.1 61526 62479 D KEGG: dde:Dde_0847 hypothetical protein; TIGRFAM: eight transmembrane protein EpsH; PFAM: Exosortase EpsH-related; eight transmembrane protein EpsH 61526..62479 Desulfovibrio vulgaris RCH1 12292932 YP_005703927.1 CDS Deval_3148 NC_017311.1 62469 63089 D TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein; EpsI family protein 62469..63089 Desulfovibrio vulgaris RCH1 12292933 YP_005703928.1 CDS Deval_3149 NC_017311.1 63244 64674 D TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: dde:Dde_0850 two component Fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase; two component, sigma54 specific, transcriptional regulator, Fis family 63244..64674 Desulfovibrio vulgaris RCH1 12292934 YP_005703929.1 CDS Deval_3150 NC_017311.1 64742 67450 D KEGG: dba:Dbac_2203 glycosyl hydrolase BNR repeat-containing protein; glycosyl hydrolase BNR repeat-containing protein 64742..67450 Desulfovibrio vulgaris RCH1 12292935 YP_005703930.1 CDS Deval_3151 NC_017311.1 67498 68871 D KEGG: dba:Dbac_2200 ATP-grasp protein-like protein; hypothetical protein 67498..68871 Desulfovibrio vulgaris RCH1 12292936 YP_005703931.1 CDS Deval_3152 NC_017311.1 69010 70395 D KEGG: pkaA; serine/threonine protein kinase; hypothetical protein 69010..70395 Desulfovibrio vulgaris RCH1 12292937 YP_005703932.1 CDS Deval_3153 NC_017311.1 70392 71744 D PFAM: protein of unknown function DUF1624; KEGG: mex:Mext_1201 hypothetical protein; protein of unknown function DUF1624 70392..71744 Desulfovibrio vulgaris RCH1 12292938 YP_005703933.1 CDS Deval_3154 NC_017311.1 71741 73036 D PFAM: protein of unknown function DUF201; KEGG: dba:Dbac_2200 ATP-grasp protein-like protein; protein of unknown function DUF201 71741..73036 Desulfovibrio vulgaris RCH1 12292939 YP_005703934.1 CDS Deval_3155 NC_017311.1 73024 74649 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent; cyclic nucleotide-binding protein 73024..74649 Desulfovibrio vulgaris RCH1 12292940 YP_005703935.1 CDS Deval_3156 NC_017311.1 74646 75653 D PFAM: Methicillin resistance protein; KEGG: sfu:Sfum_0970 hypothetical protein; Methicillin resistance protein 74646..75653 Desulfovibrio vulgaris RCH1 12292941 YP_005703936.1 CDS Deval_3157 NC_017311.1 75721 77442 D KEGG: dba:Dbac_2205 coenzyme F390 synthetase-like protein; hypothetical protein 75721..77442 Desulfovibrio vulgaris RCH1 12292942 YP_005703937.1 CDS Deval_3158 NC_017311.1 77439 79475 D TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; multi-sensor signal transduction histidine kinase 77439..79475 Desulfovibrio vulgaris RCH1 12292943 YP_005703938.1 CDS Deval_3159 NC_017311.1 79929 81341 D PFAM: Patatin; KEGG: dde:Dde_0819 alpha-beta hydrolase superfamily esterase; Patatin 79929..81341 Desulfovibrio vulgaris RCH1 12292944 YP_005703939.1 CDS Deval_3160 NC_017311.1 81714 82838 R KEGG: fps:FP1263 hypothetical protein; hypothetical protein complement(81714..82838) Desulfovibrio vulgaris RCH1 12292945 YP_005703940.1 CDS Deval_3161 NC_017311.1 82890 84872 R KEGG: dma:DMR_26840 hypothetical membrane protein; hypothetical protein complement(82890..84872) Desulfovibrio vulgaris RCH1 12292946 YP_005703941.1 CDS Deval_3162 NC_017311.1 84916 85452 R PFAM: Methyltransferase type 12; KEGG: lic:LIC11297 cyclopropane-fatty-acyl-phospholipid synthase/methyltransferase; Methyltransferase type 12 complement(84916..85452) Desulfovibrio vulgaris RCH1 12292947 YP_005703942.1 CDS Deval_3163 NC_017311.1 85428 86651 R PFAM: GtrA family protein; glycosyl transferase family 2; KEGG: sus:Acid_0467 glycosyl transferase family protein; GtrA family protein complement(85428..86651) Desulfovibrio vulgaris RCH1 12292948 YP_005703943.1 CDS Deval_3164 NC_017311.1 86648 88579 R PFAM: Methyltransferase type 11; KEGG: cmi:CMM_1603 putative pyruvyltransferase; Methyltransferase type 11 complement(86648..88579) Desulfovibrio vulgaris RCH1 12292949 YP_005703944.1 CDS Deval_3165 NC_017311.1 88672 90828 R PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: sus:Acid_0615 glycosyl transferase family protein; glycosyl transferase family 2 complement(88672..90828) Desulfovibrio vulgaris RCH1 12292950 YP_005703945.1 CDS Deval_3166 NC_017311.1 90957 92294 R PFAM: glycosyl transferase group 1; KEGG: dma:DMR_14080 putative glycosyltransferase; glycosyl transferase group 1 complement(90957..92294) Desulfovibrio vulgaris RCH1 12292951 YP_005703946.1 CDS Deval_3167 NC_017311.1 92403 95072 R KEGG: cag:Cagg_1962 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase (glutamine-hydrolyzing) complement(92403..95072) Desulfovibrio vulgaris RCH1 12292952 YP_005703947.1 CDS Deval_3168 NC_017311.1 95163 95852 R PFAM: sulfotransferase; KEGG: pmi:PMT9312_1164 sulfotransferase family protein; sulfotransferase complement(95163..95852) Desulfovibrio vulgaris RCH1 12292953 YP_005703948.1 CDS Deval_3169 NC_017311.1 95940 97346 R KEGG: lic:LIC12165 putative molybdenum cofactor biosynthesis protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Radical SAM domain protein complement(95940..97346) Desulfovibrio vulgaris RCH1 12292954 YP_005703949.1 CDS Deval_3170 NC_017311.1 97361 98797 R KEGG: dma:DMR_26190 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related protein complement(97361..98797) Desulfovibrio vulgaris RCH1 12292955 YP_005703950.1 CDS Deval_3171 NC_017311.1 98787 99671 R KEGG: rca:Rcas_3650 ABC-2 type transporter; manually curated; PFAM: ABC-2 type transporter; ABC-2 type transporter complement(98787..99671) Desulfovibrio vulgaris RCH1 12292956 YP_005703951.1 CDS Deval_3172 NC_017311.1 99944 100081 D hypothetical protein 99944..100081 Desulfovibrio vulgaris RCH1 12292957 YP_005703952.1 CDS Deval_3173 NC_017311.1 100178 100825 D TIGRFAM: adenylylsulfate kinase; KEGG: dsa:Desal_3653 adenylylsulfate kinase; PFAM: adenylylsulfate kinase; adenylylsulfate kinase 100178..100825 Desulfovibrio vulgaris RCH1 12292958 YP_005703953.1 CDS Deval_3174 NC_017311.1 100923 101804 D PFAM: glycosyl transferase family 2; KEGG: dds:Ddes_0400 glycosyl transferase family 2; glycosyl transferase family 2 100923..101804 Desulfovibrio vulgaris RCH1 12292959 YP_005703954.1 CDS Deval_3175 NC_017311.1 101804 103918 D PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: lip:LIC085 glycosyl transferase; glycosyl transferase family 2 101804..103918 Desulfovibrio vulgaris RCH1 12292960 YP_005703955.1 CDS Deval_3176 NC_017311.1 104223 105254 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lip:LIC001 integrase/recombinase; integrase family protein complement(104223..105254) Desulfovibrio vulgaris RCH1 12292961 YP_005703956.1 CDS Deval_3177 NC_017311.1 105646 105858 D KEGG: tko:TK0888 SpoVT/AbrB family transcription regulator; SpoVT/AbrB family transcription regulator 105646..105858 Desulfovibrio vulgaris RCH1 12292962 YP_005703957.1 CDS Deval_3178 NC_017311.1 105913 109443 D SMART: AAA ATPase; KEGG: stm:STM4489 putative DNA helicases; AAA ATPase 105913..109443 Desulfovibrio vulgaris RCH1 12292963 YP_005703958.1 CDS Deval_3179 NC_017311.1 109555 110646 R KEGG: dma:DMR_24840 response regulator receiver protein; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; response regulator receiver modulated metal dependent phosphohydrolase complement(109555..110646) Desulfovibrio vulgaris RCH1 12292964 YP_005703959.1 CDS Deval_3180 NC_017311.1 110643 111035 R KEGG: dma:DMR_24850 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(110643..111035) Desulfovibrio vulgaris RCH1 12292965 YP_005703960.1 CDS Deval_3181 NC_017311.1 111032 114325 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dba:Dbac_0052 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(111032..114325) Desulfovibrio vulgaris RCH1 12292966 YP_005703961.1 CDS Deval_3182 NC_017311.1 114334 115584 R PFAM: protein of unknown function DUF534; KEGG: dma:DMR_24870 hypothetical protein; protein of unknown function DUF534 complement(114334..115584) Desulfovibrio vulgaris RCH1 12292967 YP_005703962.1 CDS Deval_3183 NC_017311.1 115846 116463 R PFAM: protein of unknown function DUF1555; KEGG: nmu:Nmul_A1415 hypothetical protein; protein of unknown function DUF1555 complement(115846..116463) Desulfovibrio vulgaris RCH1 12292968 YP_005703963.1 CDS Deval_3184 NC_017311.1 117043 117915 D PFAM: protein of unknown function DUF554; KEGG: dsa:Desal_0492 protein of unknown function DUF554; protein of unknown function DUF554 117043..117915 Desulfovibrio vulgaris RCH1 12292969 YP_005703964.1 CDS Deval_3185 NC_017311.1 118052 119509 D KEGG: dma:DMR_34220 catalase; PFAM: Catalase related subgroup; Catalase domain protein; Catalase 118052..119509 Desulfovibrio vulgaris RCH1 12292970 YP_005703965.1 CDS Deval_3186 NC_017311.1 119728 120207 R KEGG: dde:Dde_1347 hypothetical protein; hypothetical protein complement(119728..120207) Desulfovibrio vulgaris RCH1 12292971 YP_005703966.1 CDS Deval_3187 NC_017311.1 120396 121736 R KEGG: dba:Dbac_2674 chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter, chromate ion transporter (CHR) family complement(120396..121736) Desulfovibrio vulgaris RCH1 12292972 YP_005703967.1 CDS Deval_3188 NC_017311.1 121743 122747 R PFAM: Chromate resistance exported protein; KEGG: dba:Dbac_2675 ChrB protein; Chromate resistance exported protein complement(121743..122747) Desulfovibrio vulgaris RCH1 12292973 YP_005703968.1 CDS Deval_3189 NC_017311.1 122734 123045 R KEGG: dba:Dbac_2676 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain protein complement(122734..123045) Desulfovibrio vulgaris RCH1 12292974 YP_005703969.1 CDS Deval_3190 NC_017311.1 123109 123387 R KEGG: dba:Dbac_2677 hypothetical protein; hypothetical protein complement(123109..123387) Desulfovibrio vulgaris RCH1 12292975 YP_005703970.1 CDS Deval_3191 NC_017311.1 123720 124931 D PFAM: major facilitator superfamily MFS_1; KEGG: dma:DMR_37230 major facilitator superfamily protein; major facilitator superfamily MFS_1 123720..124931 Desulfovibrio vulgaris RCH1 12292976 YP_005703971.1 CDS Deval_3192 NC_017311.1 125264 126763 D PFAM: Radical SAM domain protein; KEGG: dsa:Desal_3155 radical SAM domain protein; Radical SAM domain protein 125264..126763 Desulfovibrio vulgaris RCH1 12292977 YP_005703972.1 CDS Deval_3193 NC_017311.1 126908 127957 R PFAM: 3-dehydroquinate synthase; KEGG: scl:sce5394 glycerol-1-phosphate dehydrogenase (NAD(P)(+)); 3-dehydroquinate synthase complement(126908..127957) Desulfovibrio vulgaris RCH1 12292978 YP_005703973.1 CDS Deval_3194 NC_017311.1 128127 130301 R KEGG: lip:LI1150 putative regulator; PFAM: Stage II sporulation protein E; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; protein serine/threonine phosphatase complement(128127..130301) Desulfovibrio vulgaris RCH1 12292979 YP_005703974.1 CDS Deval_3195 NC_017311.1 130298 130672 R KEGG: bta:531974 neuron navigator 1; neuron navigator 1 complement(130298..130672) Desulfovibrio vulgaris RCH1 12292980 YP_005703975.1 CDS Deval_3196 NC_017311.1 130669 132396 R KEGG: lip:LI1151 transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma54 specific transcriptional regulator, Fis family complement(130669..132396) Desulfovibrio vulgaris RCH1 12292981 YP_005703976.1 CDS Deval_3197 NC_017311.1 132444 133484 R KEGG: lip:LI0551 translocation protein in type III secretion; TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; type III secretion protein, YscU/HrpY family complement(132444..133484) Desulfovibrio vulgaris RCH1 12292982 YP_005703977.1 CDS Deval_3198 NC_017311.1 133481 134296 R KEGG: lip:LI0550 type III secretion component protein SctT; TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; type III secretion protein SpaR/YscT/HrcT complement(133481..134296) Desulfovibrio vulgaris RCH1 12292983 YP_005703978.1 CDS Deval_3199 NC_017311.1 134303 134563 R KEGG: lip:LI0549 translocation protein in type III secretion; TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; type III secretion protein, HrpO family complement(134303..134563) Desulfovibrio vulgaris RCH1 12292984 YP_005703979.1 CDS Deval_3200 NC_017311.1 134885 136978 R KEGG: lip:LI0548 putative type III secretion pore protein; TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; type III secretion protein, HrcV family complement(134885..136978) Desulfovibrio vulgaris RCH1 12292985 YP_005703980.1 CDS Deval_3201 NC_017311.1 136975 137334 R KEGG: lip:LI0547 hypothetical protein; hypothetical protein complement(136975..137334) Desulfovibrio vulgaris RCH1 12292986 YP_005703981.1 CDS Deval_3202 NC_017311.1 137337 137705 R KEGG: lip:LI1152 hypothetical protein; hypothetical protein complement(137337..137705) Desulfovibrio vulgaris RCH1 12292987 YP_005703982.1 CDS Deval_3203 NC_017311.1 137702 138076 R TIGRFAM: type III secretion chaperone SycN; KEGG: lip:LI0546 hypothetical protein; type III secretion chaperone SycN complement(137702..138076) Desulfovibrio vulgaris RCH1 12292988 YP_005703983.1 CDS Deval_3204 NC_017311.1 138079 139203 R KEGG: lip:LI1153 putative outer protein N; TIGRFAM: type III secretion regulator YopN/LcrE/InvE/MxiC; type III secretion effector delivery regulator, TyeA family; PFAM: TyeA domain-containing protein; Hypersensitivity response secretion HrpJ domain protein; type III secretion regulator YopN/LcrE/InvE/MxiC complement(138079..139203) Desulfovibrio vulgaris RCH1 12292989 YP_005703984.1 CDS Deval_3205 NC_017311.1 139910 140212 D KEGG: lip:LI0545 hypothetical protein; hypothetical protein 139910..140212 Desulfovibrio vulgaris RCH1 12292990 YP_005703985.1 CDS Deval_3206 NC_017311.1 140248 140757 D KEGG: lip:LI1154 hypothetical protein; hypothetical protein 140248..140757 Desulfovibrio vulgaris RCH1 12292991 YP_005703986.1 CDS Deval_3207 NC_017311.1 140766 141266 D KEGG: lip:LI1157 regulatory protein PcrH; TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3 repeat-containing protein; type III secretion low calcium response chaperone LcrH/SycD 140766..141266 Desulfovibrio vulgaris RCH1 12292992 YP_005703987.1 CDS Deval_3208 NC_017311.1 141263 142270 D KEGG: lip:LI1158 hypothetical protein; hypothetical protein 141263..142270 Desulfovibrio vulgaris RCH1 12292993 YP_005703988.1 CDS Deval_3209 NC_017311.1 142282 143115 D PFAM: YopD family protein; KEGG: asa:ASA_P5G064 AopD protein; YopD family protein 142282..143115 Desulfovibrio vulgaris RCH1 12292994 YP_005703989.1 CDS Deval_3210 NC_017311.1 143168 143623 D PFAM: Tir chaperone family protein; KEGG: bpe:BP2236 hypothetical protein; Tir chaperone family protein 143168..143623 Desulfovibrio vulgaris RCH1 12292995 YP_005703990.1 CDS Deval_3211 NC_017311.1 143710 145800 D KEGG: lip:LI1160 putative type III secretion protein YscC; TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; type III secretion outer membrane pore, YscC/HrcC family 143710..145800 Desulfovibrio vulgaris RCH1 12292996 YP_005703991.1 CDS Deval_3212 NC_017311.1 145797 147605 D TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 hypothetical protein; type III secretion apparatus protein, YscD/HrpQ family 145797..147605 Desulfovibrio vulgaris RCH1 12292997 YP_005703992.1 CDS Deval_3213 NC_017311.1 147598 147807 D KEGG: hch:HCH_05129 hypothetical protein; hypothetical protein 147598..147807 Desulfovibrio vulgaris RCH1 12292998 YP_005703993.1 CDS Deval_3214 NC_017311.1 147833 148084 D KEGG: eok:G2583_4407 type III secretion apparatus needle protein; TIGRFAM: type III secretion system needle protein; PFAM: Type III secretion, needle-protein like; type III secretion system needle protein 147833..148084 Desulfovibrio vulgaris RCH1 12292999 YP_005703994.1 CDS Deval_3215 NC_017311.1 148279 148644 D KEGG: lip:LI0544 hypothetical protein; hypothetical protein 148279..148644 Desulfovibrio vulgaris RCH1 12293000 YP_005703995.1 CDS Deval_3216 NC_017311.1 148687 149502 D KEGG: aoe:Clos_0100 triple helix repeat-containing collagen; hypothetical protein 148687..149502 Desulfovibrio vulgaris RCH1 12293001 YP_005703996.1 CDS Deval_3217 NC_017311.1 149527 150342 D KEGG: lip:LI1163 putative type III secretion protein; TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; type III secretion apparatus lipoprotein, YscJ/HrcJ family 149527..150342 Desulfovibrio vulgaris RCH1 12293002 YP_005703997.1 CDS Deval_3218 NC_017311.1 150349 151272 D KEGG: lip:LI0542 hypothetical protein; hypothetical protein 150349..151272 Desulfovibrio vulgaris RCH1 12293003 YP_005703998.1 CDS Deval_3219 NC_017311.1 151251 151868 D KEGG: lip:LI0541 type III secretion system protein; TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; type III secretion apparatus protein, HrpE/YscL family 151251..151868 Desulfovibrio vulgaris RCH1 12293004 YP_005703999.1 CDS Deval_3220 NC_017311.1 152196 153512 D TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: lip:LI0540 type III secretion system ATPase; SMART: AAA ATPase; type III secretion apparatus H+-transporting two-sector ATPase 152196..153512 Desulfovibrio vulgaris RCH1 12293005 YP_005704000.1 CDS Deval_3221 NC_017311.1 153516 154010 D PFAM: type III secretion YscO fmaily protein; KEGG: lip:LI0539 hypothetical protein; type III secretion YscO fmaily protein 153516..154010 Desulfovibrio vulgaris RCH1 12293006 YP_005704001.1 CDS Deval_3222 NC_017311.1 154041 154715 D TIGRFAM: type III secretion system needle length determinant; KEGG: hch:HCH_05109 hypothetical protein; type III secretion system needle length determinant 154041..154715 Desulfovibrio vulgaris RCH1 12293007 YP_005704002.1 CDS Deval_3223 NC_017311.1 154717 156171 D KEGG: lip:LI1166 putative translocation protein in type III secretion; TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; type III secretion system apparatus protein YscQ/HrcQ 154717..156171 Desulfovibrio vulgaris RCH1 12293008 YP_005704003.1 CDS Deval_3224 NC_017311.1 156168 156818 D KEGG: lip:LI0537 type III secretion system protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; Yop virulence translocation R 156168..156818 Desulfovibrio vulgaris RCH1 12293009 YP_005704004.1 CDS Deval_3225 NC_017311.1 156849 157184 D KEGG: lip:LI1167 anti-anti-sigma factor; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 156849..157184 Desulfovibrio vulgaris RCH1 12293010 YP_005704005.1 CDS Deval_3226 NC_017311.1 157200 157616 D KEGG: lip:LI1168 sigma regulatory factor-histidine kinase; sigma regulatory factor-histidine kinase 157200..157616 Desulfovibrio vulgaris RCH1 12293011 YP_005704006.1 CDS Deval_3227 NC_017311.1 157627 158979 D PFAM: Lytic transglycosylase catalytic; KEGG: lip:LI1169 putative transglycosylase; Lytic transglycosylase catalytic 157627..158979 Desulfovibrio vulgaris RCH1 12293012 YP_005704007.1 CDS Deval_3228 NC_017311.1 159353 159820 D PFAM: Tir chaperone family protein; KEGG: eta:ETA_05380 potential ORFB-specific chaperone, encodes a homolog of virulence/avirulence effector proteins secreted via the type III pathway; Tir chaperone family protein 159353..159820 Desulfovibrio vulgaris RCH1 12293013 YP_005704008.1 CDS Deval_3229 NC_017311.1 159880 162360 D KEGG: ang:An07g05660 hypothetical protein; hypothetical protein 159880..162360 Desulfovibrio vulgaris RCH1 12293014 YP_005704009.1 CDS Deval_3230 NC_017311.1 162682 164919 D TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; metal dependent phophohydrolase; PFAM: DEAD/DEAH box helicase domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: metal dependent phosphohydrolase; SMART: DEAD-like helicase ; metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 162682..164919 Desulfovibrio vulgaris RCH1 12293015 YP_005704010.1 CDS Deval_3231 NC_017311.1 164933 165616 D KEGG: avn:Avin_31620 CRISPR-associated protein Cas5d; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5; CRISPR-associated protein Cas5 family 164933..165616 Desulfovibrio vulgaris RCH1 12293016 YP_005704011.1 CDS Deval_3232 NC_017311.1 165613 167451 D KEGG: dma:DMR_14370 hypothetical protein; TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; CRISPR-associated protein, Csd1 family 165613..167451 Desulfovibrio vulgaris RCH1 12293017 YP_005704012.1 CDS Deval_3233 NC_017311.1 167454 168326 D KEGG: avn:Avin_31600 CRISPR-associated protein Csd2; TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; CRISPR-associated protein, Csd2 family 167454..168326 Desulfovibrio vulgaris RCH1 12293018 YP_005704013.1 CDS Deval_3234 NC_017311.1 168328 168966 D TIGRFAM: CRISPR-associated protein Cas4; KEGG: dma:DMR_14390 hypothetical protein; CRISPR-associated protein Cas4 168328..168966 Desulfovibrio vulgaris RCH1 12293019 YP_005704014.1 CDS Deval_3235 NC_017311.1 168950 169981 D KEGG: sat:SYN_02473 putative cytoplasmic protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; CRISPR-associated protein Cas1 168950..169981 Desulfovibrio vulgaris RCH1 12293020 YP_005704015.1 CDS Deval_3236 NC_017311.1 169986 170276 D KEGG: dma:DMR_14410 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; CRISPR-associated protein Cas2 169986..170276 Desulfovibrio vulgaris RCH1 12293021 YP_005704016.1 CDS Deval_3237 NC_017311.1 172385 173218 R PFAM: zinc/iron permease; KEGG: dma:DMR_11420 zinc transporter ZupT; zinc/iron permease complement(172385..173218) Desulfovibrio vulgaris RCH1 12293022 YP_005704017.1 CDS Deval_3238 NC_017311.1 173340 173987 R KEGG: geo:Geob_1277 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; two component transcriptional regulator, LuxR family complement(173340..173987) Desulfovibrio vulgaris RCH1 12293023 YP_005704018.1 CDS Deval_3239 NC_017311.1 173974 176022 R KEGG: gur:Gura_0744 integral membrane sensor signal transduction histidine kinase; PFAM: Diverse 7TM receptor transmembrane region; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; integral membrane sensor signal transduction histidine kinase complement(173974..176022) Desulfovibrio vulgaris RCH1 12293024 YP_005704019.1 CDS Deval_3240 NC_017311.1 176222 178387 R KEGG: bav:BAV1572 autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain protein complement(176222..178387) Desulfovibrio vulgaris RCH1 12293025 YP_005704020.1 CDS Deval_3242 NC_017311.1 179343 180890 R TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; KEGG: dsa:Desal_0518 transcriptional regulator, NifA, fis family; SMART: GAF domain protein; AAA ATPase; transcriptional regulator, NifA subfamily, Fis Family complement(179343..180890) Desulfovibrio vulgaris RCH1 12293027 YP_005704021.1 CDS Deval_3243 NC_017311.1 182106 185831 D KEGG: met:M446_6067 hypothetical protein; hypothetical protein 182106..185831 Desulfovibrio vulgaris RCH1 12293028 YP_005704022.1 CDS Deval_3244 NC_017311.1 185842 186312 D PFAM: Tir chaperone family protein; KEGG: mmi:MMAR_1484 PPE family protein; Tir chaperone family protein 185842..186312 Desulfovibrio vulgaris RCH1 12293029 YP_005704023.1 CDS Deval_3246 NC_017311.1 186891 188132 D KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component; ABC-type uncharacterized transport system, periplasmic component 186891..188132 Desulfovibrio vulgaris RCH1 12293031 YP_005704024.1 CDS Deval_3247 NC_017311.1 188119 191157 D PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_03642 major facilitator superfamily protein; major facilitator superfamily MFS_1 188119..191157 Desulfovibrio vulgaris RCH1 12293032 YP_005704025.1 CDS Deval_3248 NC_017311.1 191189 192976 D KEGG: pin:Ping_3332 hypothetical protein; hypothetical protein 191189..192976 Desulfovibrio vulgaris RCH1 12293033 YP_005704026.1 CDS Deval_3249 NC_017311.1 193169 193906 R KEGG: dsa:Desal_0904 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; extracellular solute-binding protein family 3 complement(193169..193906) Desulfovibrio vulgaris RCH1 12293034 YP_005704027.1 CDS Deval_3250 NC_017311.1 194418 194810 D KEGG: dba:Dbac_0227 transcriptional regulator, XRE family; transcriptional regulator, XRE family 194418..194810 Desulfovibrio vulgaris RCH1 12293035 YP_005704028.1 CDS Deval_3251 NC_017311.1 194800 196095 D PFAM: HipA domain protein; KEGG: dba:Dbac_0226 HipA domain protein; HipA domain protein 194800..196095 Desulfovibrio vulgaris RCH1 12293038 YP_005704029.1 CDS Deval_3252 NC_017311.1 197732 198550 D KEGG: dma:DMR_p1_00010 putative chromosome partitioning protein ParA; putative chromosome partitioning protein ParA 197732..198550 Desulfovibrio vulgaris RCH1 12293036 YP_005704030.1 CDS Deval_3253 NC_017311.1 198601 201996 D KEGG: sce:YIR019C GPI-anchored cell surface glycoprotein (flocculin) required for pseudohyphal formation, invasive growth, flocculation, and biofilms; transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p); hypothetical protein 198601..201996 Desulfovibrio vulgaris RCH1 12293037 Deval_R0001 tRNA Deval_R0001 NC_017310.1 61847 61922 D tRNA-Ala 61847..61922 Desulfovibrio vulgaris RCH1 12866972 Deval_R0002 tRNA Deval_R0002 NC_017310.1 71999 72074 D tRNA-Ala 71999..72074 Desulfovibrio vulgaris RCH1 12866979 Deval_R0004 tRNA Deval_R0004 NC_017310.1 149468 149544 D tRNA-Ile 149468..149544 Desulfovibrio vulgaris RCH1 12867042 Deval_R0005 tRNA Deval_R0005 NC_017310.1 149567 149642 D tRNA-Ala 149567..149642 Desulfovibrio vulgaris RCH1 12867043 Deval_R0008 tRNA Deval_R0008 NC_017310.1 231679 231765 R tRNA-Leu complement(231679..231765) Desulfovibrio vulgaris RCH1 12867110 Deval_R0009 tRNA Deval_R0009 NC_017310.1 275097 275172 R tRNA-Lys complement(275097..275172) Desulfovibrio vulgaris RCH1 12867143 Deval_R0011 tRNA Deval_R0011 NC_017310.1 301076 301152 D tRNA-Ile 301076..301152 Desulfovibrio vulgaris RCH1 12867164 Deval_R0012 tRNA Deval_R0012 NC_017310.1 301175 301250 D tRNA-Ala 301175..301250 Desulfovibrio vulgaris RCH1 12867165 Deval_R0015 tRNA Deval_R0015 NC_017310.1 323401 323476 D tRNA-Val 323401..323476 Desulfovibrio vulgaris RCH1 12867185 Deval_R0016 tRNA Deval_R0016 NC_017310.1 323480 323556 D tRNA-Asp 323480..323556 Desulfovibrio vulgaris RCH1 12867186 Deval_R0017 tRNA Deval_R0017 NC_017310.1 323628 323704 D tRNA-Asp 323628..323704 Desulfovibrio vulgaris RCH1 12867187 Deval_R0018 tRNA Deval_R0018 NC_017310.1 411618 411693 R tRNA-Thr complement(411618..411693) Desulfovibrio vulgaris RCH1 12867266 Deval_R0019 tRNA Deval_R0019 NC_017310.1 421638 421714 D tRNA-Met 421638..421714 Desulfovibrio vulgaris RCH1 12867278 Deval_R0020 tRNA Deval_R0020 NC_017310.1 518812 518898 R tRNA-Leu complement(518812..518898) Desulfovibrio vulgaris RCH1 12867356 Deval_R0021 tRNA Deval_R0021 NC_017310.1 677241 677317 R tRNA-Glu complement(677241..677317) Desulfovibrio vulgaris RCH1 12868951 Deval_R0022 tRNA Deval_R0022 NC_017310.1 713833 713909 D tRNA-Glu 713833..713909 Desulfovibrio vulgaris RCH1 12868983 Deval_R0023 tRNA Deval_R0023 NC_017310.1 780272 780363 D tRNA-Ser 780272..780363 Desulfovibrio vulgaris RCH1 12869042 Deval_R0025 tRNA Deval_R0025 NC_017310.1 883541 883632 R tRNA-Ser complement(883541..883632) Desulfovibrio vulgaris RCH1 12869130 Deval_R0026 tRNA Deval_R0026 NC_017310.1 915898 915992 R tRNA-Ser complement(915898..915992) Desulfovibrio vulgaris RCH1 12869156 Deval_R0027 tRNA Deval_R0027 NC_017310.1 1096871 1096946 R tRNA-Lys complement(1096871..1096946) Desulfovibrio vulgaris RCH1 12869325 Deval_R0028 tRNA Deval_R0028 NC_017310.1 1097138 1097213 R tRNA-Lys complement(1097138..1097213) Desulfovibrio vulgaris RCH1 12869326 Deval_R0029 tRNA Deval_R0029 NC_017310.1 1207408 1207483 D tRNA-Thr 1207408..1207483 Desulfovibrio vulgaris RCH1 12869418 Deval_R0030 tRNA Deval_R0030 NC_017310.1 1373025 1373114 R tRNA-Sec complement(1373025..1373114) Desulfovibrio vulgaris RCH1 12867637 Deval_R0031 tRNA Deval_R0031 NC_017310.1 1413140 1413224 D tRNA-Leu 1413140..1413224 Desulfovibrio vulgaris RCH1 12867689 Deval_R0032 tRNA Deval_R0032 NC_017310.1 1513439 1513525 R tRNA-Leu complement(1513439..1513525) Desulfovibrio vulgaris RCH1 12867787 Deval_R0034 tRNA Deval_R0034 NC_017310.1 1812438 1812514 R tRNA-Arg complement(1812438..1812514) Desulfovibrio vulgaris RCH1 12868065 Deval_R0035 tRNA Deval_R0035 NC_017310.1 1827338 1827424 D tRNA-Leu 1827338..1827424 Desulfovibrio vulgaris RCH1 12868082 Deval_R0036 tRNA Deval_R0036 NC_017310.1 1842989 1843065 D tRNA-Met 1842989..1843065 Desulfovibrio vulgaris RCH1 12868099 Deval_R0037 tRNA Deval_R0037 NC_017310.1 1859596 1859672 D tRNA-Pro 1859596..1859672 Desulfovibrio vulgaris RCH1 12868115 Deval_R0038 tRNA Deval_R0038 NC_017310.1 1924865 1924940 D tRNA-Gln 1924865..1924940 Desulfovibrio vulgaris RCH1 12866301 Deval_R0039 tRNA Deval_R0039 NC_017310.1 1934716 1934792 D tRNA-Arg 1934716..1934792 Desulfovibrio vulgaris RCH1 12866313 Deval_R0040 tRNA Deval_R0040 NC_017310.1 1934825 1934901 D tRNA-Arg 1934825..1934901 Desulfovibrio vulgaris RCH1 12866314 Deval_R0041 tRNA Deval_R0041 NC_017310.1 1934921 1934997 D tRNA-Arg 1934921..1934997 Desulfovibrio vulgaris RCH1 12866315 Deval_R0042 tRNA Deval_R0042 NC_017310.1 1987045 1987139 D tRNA-Ser 1987045..1987139 Desulfovibrio vulgaris RCH1 12866353 Deval_R0043 tRNA Deval_R0043 NC_017310.1 2047020 2047095 D tRNA-Met 2047020..2047095 Desulfovibrio vulgaris RCH1 12866422 Deval_R0045 tRNA Deval_R0045 NC_017310.1 2132682 2132758 R tRNA-Met complement(2132682..2132758) Desulfovibrio vulgaris RCH1 12866496 Deval_R0046 tRNA Deval_R0046 NC_017310.1 2167018 2167095 D tRNA-Pro 2167018..2167095 Desulfovibrio vulgaris RCH1 12866521 Deval_R0047 tRNA Deval_R0047 NC_017310.1 2253906 2253980 D tRNA-Gly 2253906..2253980 Desulfovibrio vulgaris RCH1 12866592 Deval_R0048 tRNA Deval_R0048 NC_017310.1 2253992 2254066 D tRNA-Cys 2253992..2254066 Desulfovibrio vulgaris RCH1 12866593 Deval_R0049 tRNA Deval_R0049 NC_017310.1 2254074 2254148 D tRNA-Gly 2254074..2254148 Desulfovibrio vulgaris RCH1 12866594 Deval_R0050 tRNA Deval_R0050 NC_017310.1 2254181 2254255 D tRNA-Gly 2254181..2254255 Desulfovibrio vulgaris RCH1 12866595 Deval_R0051 tRNA Deval_R0051 NC_017310.1 2307508 2307582 D tRNA-Gly 2307508..2307582 Desulfovibrio vulgaris RCH1 12866653 Deval_R0052 tRNA Deval_R0052 NC_017310.1 2359686 2359761 D tRNA-Ala 2359686..2359761 Desulfovibrio vulgaris RCH1 12866701 Deval_R0053 tRNA Deval_R0053 NC_017310.1 2478471 2478546 D tRNA-Asn 2478471..2478546 Desulfovibrio vulgaris RCH1 12866797 Deval_R0054 tRNA Deval_R0054 NC_017310.1 2497024 2497099 D tRNA-Asn 2497024..2497099 Desulfovibrio vulgaris RCH1 12866811 Deval_R0058 tRNA Deval_R0058 NC_017310.1 2566088 2566163 R tRNA-Ala complement(2566088..2566163) Desulfovibrio vulgaris RCH1 12866871 Deval_R0059 tRNA Deval_R0059 NC_017310.1 2566186 2566262 R tRNA-Ile complement(2566186..2566262) Desulfovibrio vulgaris RCH1 12866872 Deval_R0061 tRNA Deval_R0061 NC_017310.1 2654786 2654860 R tRNA-Val complement(2654786..2654860) Desulfovibrio vulgaris RCH1 12868186 Deval_R0062 tRNA Deval_R0062 NC_017310.1 2694659 2694745 R tRNA-Leu complement(2694659..2694745) Desulfovibrio vulgaris RCH1 12868224 Deval_R0065 tRNA Deval_R0065 NC_017310.1 2699487 2699562 R tRNA-Ala complement(2699487..2699562) Desulfovibrio vulgaris RCH1 12868228 Deval_R0066 tRNA Deval_R0066 NC_017310.1 2699585 2699661 R tRNA-Ile complement(2699585..2699661) Desulfovibrio vulgaris RCH1 12868229 Deval_R0069 tRNA Deval_R0069 NC_017310.1 2837752 2837838 R tRNA-Leu complement(2837752..2837838) Desulfovibrio vulgaris RCH1 12868376 Deval_R0070 tRNA Deval_R0070 NC_017310.1 2980790 2980866 R tRNA-Arg complement(2980790..2980866) Desulfovibrio vulgaris RCH1 12868514 Deval_R0071 tRNA Deval_R0071 NC_017310.1 3022171 3022246 D tRNA-Thr 3022171..3022246 Desulfovibrio vulgaris RCH1 12868549 Deval_R0072 tRNA Deval_R0072 NC_017310.1 3022253 3022338 D tRNA-Tyr 3022253..3022338 Desulfovibrio vulgaris RCH1 12868550 Deval_R0073 tRNA Deval_R0073 NC_017310.1 3022396 3022472 D tRNA-Gly 3022396..3022472 Desulfovibrio vulgaris RCH1 12868551 Deval_R0074 tRNA Deval_R0074 NC_017310.1 3022509 3022584 D tRNA-Thr 3022509..3022584 Desulfovibrio vulgaris RCH1 12868552 Deval_R0075 tRNA Deval_R0075 NC_017310.1 3024003 3024079 D tRNA-Trp 3024003..3024079 Desulfovibrio vulgaris RCH1 12868555 Deval_R0076 tRNA Deval_R0076 NC_017310.1 3064889 3064963 D tRNA-Gln 3064889..3064963 Desulfovibrio vulgaris RCH1 12868587 Deval_R0077 tRNA Deval_R0077 NC_017310.1 3064981 3065058 D tRNA-Glu 3064981..3065058 Desulfovibrio vulgaris RCH1 12868588 Deval_R0078 tRNA Deval_R0078 NC_017310.1 3166970 3167046 D tRNA-Pro 3166970..3167046 Desulfovibrio vulgaris RCH1 12868668 Deval_R0081 tRNA Deval_R0081 NC_017310.1 3253499 3253574 R tRNA-Ala complement(3253499..3253574) Desulfovibrio vulgaris RCH1 12868734 Deval_R0082 tRNA Deval_R0082 NC_017310.1 3253597 3253673 R tRNA-Ile complement(3253597..3253673) Desulfovibrio vulgaris RCH1 12868735 Deval_R0084 tRNA Deval_R0084 NC_017310.1 3290611 3290686 R tRNA-Val complement(3290611..3290686) Desulfovibrio vulgaris RCH1 12868770 Deval_R0085 tRNA Deval_R0085 NC_017310.1 3426037 3426112 R tRNA-Phe complement(3426037..3426112) Desulfovibrio vulgaris RCH1 12867427 Deval_R0086 tRNA Deval_R0086 NC_017310.1 3437105 3437180 D tRNA-His 3437105..3437180 Desulfovibrio vulgaris RCH1 12867437 Deval_R0087 tRNA Deval_R0087 NC_017310.1 3487679 3487755 R tRNA-Arg complement(3487679..3487755) Desulfovibrio vulgaris RCH1 12867482 Deval_R0003 rRNA Deval_R0003 NC_017310.1 147854 149390 D 16S ribosomal RNA 147854..149390 Desulfovibrio vulgaris RCH1 12867041 Deval_R0006 rRNA Deval_R0006 NC_017310.1 149793 152720 D 23S ribosomal RNA 149793..152720 Desulfovibrio vulgaris RCH1 12867044 Deval_R0007 rRNA Deval_R0007 NC_017310.1 152823 152937 D 5S ribosomal RNA 152823..152937 Desulfovibrio vulgaris RCH1 12867045 Deval_R0010 rRNA Deval_R0010 NC_017310.1 299462 300998 D 16S ribosomal RNA 299462..300998 Desulfovibrio vulgaris RCH1 12867163 Deval_R0013 rRNA Deval_R0013 NC_017310.1 301401 304329 D 23S ribosomal RNA 301401..304329 Desulfovibrio vulgaris RCH1 12867166 Deval_R0014 rRNA Deval_R0014 NC_017310.1 304432 304546 D 5S ribosomal RNA 304432..304546 Desulfovibrio vulgaris RCH1 12867167 Deval_R0055 rRNA Deval_R0055 NC_017310.1 2562632 2562746 R 5S ribosomal RNA complement(2562632..2562746) Desulfovibrio vulgaris RCH1 12866868 Deval_R0056 rRNA Deval_R0056 NC_017310.1 2562793 2562907 R 5S ribosomal RNA complement(2562793..2562907) Desulfovibrio vulgaris RCH1 12866869 Deval_R0057 rRNA Deval_R0057 NC_017310.1 2563010 2565937 R 23S ribosomal RNA complement(2563010..2565937) Desulfovibrio vulgaris RCH1 12866870 Deval_R0060 rRNA Deval_R0060 NC_017310.1 2566340 2567876 R 16S ribosomal RNA complement(2566340..2567876) Desulfovibrio vulgaris RCH1 12866873 Deval_R0063 rRNA Deval_R0063 NC_017310.1 2696192 2696306 R 5S ribosomal RNA complement(2696192..2696306) Desulfovibrio vulgaris RCH1 12868226 Deval_R0064 rRNA Deval_R0064 NC_017310.1 2696409 2699336 R 23S ribosomal RNA complement(2696409..2699336) Desulfovibrio vulgaris RCH1 12868227 Deval_R0067 rRNA Deval_R0067 NC_017310.1 2699739 2701275 R 16S ribosomal RNA complement(2699739..2701275) Desulfovibrio vulgaris RCH1 12868230 Deval_R0079 rRNA Deval_R0079 NC_017310.1 3250203 3250317 R 5S ribosomal RNA complement(3250203..3250317) Desulfovibrio vulgaris RCH1 12868732 Deval_R0080 rRNA Deval_R0080 NC_017310.1 3250420 3253348 R 23S ribosomal RNA complement(3250420..3253348) Desulfovibrio vulgaris RCH1 12868733 Deval_R0083 rRNA Deval_R0083 NC_017310.1 3253751 3255287 R 16S ribosomal RNA complement(3253751..3255287) Desulfovibrio vulgaris RCH1 12868736