-- dump date   	20140619_064906
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_005700810.1	KEGG: dde:Dde_0031 chromosome segregation ATPase
YP_005700811.1	KEGG: dde:Dde_0030 hypothetical protein
YP_005700812.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dde:Dde_0029 chromosome segregation DNA-binding protein; SMART: ParB domain protein nuclease
YP_005700813.1	PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7-phosphate 1-kinase
YP_005700814.1	PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: dsa:Desal_0011 hypothetical protein
YP_005700815.1	PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dde:Dde_0017 sun protein
YP_005700816.1	PFAM: protein of unknown function DUF116; KEGG: drt:Dret_0017 protein of unknown function DUF116
YP_005700817.1	KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein
YP_005700818.1	KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_005700819.1	KEGG: dde:Dde_0012 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein
YP_005700820.1	TIGRFAM: histidyl-tRNA synthetase; KEGG: dde:Dde_0011 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein
YP_005700821.1	PFAM: Methyltransferase type 11; KEGG: dde:Dde_0009 hypothetical protein
YP_005700822.1	TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: dsa:Desal_0813 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein
YP_005700823.1	TIGRFAM: dihydroxy-acid dehydratase; KEGG: dde:Dde_0116 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase
YP_005700824.1	PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX
YP_005700825.1	TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; SMART: AAA ATPase
YP_005700826.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: amu:Amuc_0864 sulfatase
YP_005700827.1	PFAM: diacylglycerol kinase; KEGG: vsa:VSAL_I0531 diacylglycerol kinase
YP_005700828.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dds:Ddes_0203 YbaK/prolyl-tRNA synthetase associated region
YP_005700829.1	KEGG: bgl:bglu_2g21630 propionate catabolism operon regulatory protein
YP_005700830.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: dde:Dde_0113 ribonucleotide-diphosphate reductase subunit alpha; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein
YP_005700831.1	KEGG: dde:Dde_0109 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005700832.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0110 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein
YP_005700833.1	KEGG: dde:Dde_0111 zinc resistance-associated protein
YP_005700834.1	PFAM: permease; KEGG: dde:Dde_0132 permease, putative
YP_005700835.1	KEGG: dds:Ddes_0311 hypothetical protein
YP_005700836.1	PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_0107 putative lipoprotein
YP_005700837.1	SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: dde:Dde_0106 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein
YP_005700838.1	KEGG: dma:DMR_35470 hypothetical protein
YP_005700839.1	KEGG: dde:Dde_0104 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp
YP_005700841.1	PFAM: Peptidase M23; KEGG: dds:Ddes_0002 peptidase M23
YP_005700842.1	KEGG: dde:Dde_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase
YP_005700843.1	SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain
YP_005700844.1	TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; KEGG: dds:Ddes_0005 DNA gyrase, B subunit; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein
YP_005700845.1	SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: dds:Ddes_0006 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller
YP_005700846.1	KEGG: dds:Ddes_0007 putative lipoprotein
YP_005700847.1	PFAM: UspA domain-containing protein; KEGG: dde:Dde_0098 universal stress protein
YP_005700848.1	KEGG: dde:Dde_0099 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type
YP_005700849.1	KEGG: dat:HRM2_48190 putative TRAP-type C4-dicarboxylate transport system, large permease component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005700850.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dal:Dalk_0472 tripartite ATP-independent periplasmic transporter DctQ component
YP_005700851.1	KEGG: dal:Dalk_0473 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7
YP_005700852.1	KEGG: dde:Dde_3779 MerR family transcriptional regulator
YP_005700853.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3782 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein
YP_005700854.1	KEGG: dma:DMR_20740 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein
YP_005700855.1	KEGG: dde:Dde_3768 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase
YP_005700856.1	KEGG: dde:Dde_2734 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005700857.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3337 nigerythrin
YP_005700858.1	KEGG: cyp:PCC8801_2037 hypothetical protein
YP_005700859.1	TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; KEGG: cwo:Cwoe_0137 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein
YP_005700860.1	KEGG: dsa:Desal_1571 hypothetical protein
YP_005700861.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dsa:Desal_2892 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005700862.1	KEGG: sdn:Sden_0155 hypothetical protein
YP_005700863.1	KEGG: dde:Dde_1483 hypothetical protein
YP_005700864.1	KEGG: asa:ASA_3792 chaperone CsaA; TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain-containing protein
YP_005700865.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_0092 hydantoinase/oxoprolinase family protein
YP_005700866.1	KEGG: dde:Dde_0093 hypothetical protein
YP_005700867.1	KEGG: dde:Dde_0157 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH
YP_005700868.1	PFAM: AzlC family protein; KEGG: dde:Dde_0158 AzlC family protein
YP_005700869.1	PFAM: branched-chain amino acid transport; KEGG: lhk:LHK_03139 branched-chain amino acid transport
YP_005700870.1	PFAM: isochorismatase hydrolase; KEGG: ppd:Ppro_2976 isochorismatase hydrolase
YP_005700871.1	PFAM: DSBA oxidoreductase; KEGG: dde:Dde_0163 DsbA-like thioredoxin domain-containing protein
YP_005700872.1	KEGG: dde:Dde_3664 hypothetical protein
YP_005700873.1	KEGG: drt:Dret_2390 putative zinc resistance-associated protein precursor
YP_005700874.1	PFAM: protein of unknown function DUF523; KEGG: dsa:Desal_0784 protein of unknown function DUF523
YP_005700875.1	KEGG: dde:Dde_3661 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase
YP_005700876.1	KEGG: dsa:Desal_1072 transcriptional regulator, TraR/DksA family
YP_005700877.1	KEGG: gym:GYMC10_2690 hypothetical protein
YP_005700878.1	KEGG: dde:Dde_3580 peptidoglycan-binding LysM; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM
YP_005700879.1	KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding
YP_005700880.1	KEGG: dde:Dde_3582 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3
YP_005700881.1	manually curated; TIGRFAM: flagellar biosynthetic protein FliP; KEGG: lip:LI0639 flagellar biosynthesis protein FliP; PFAM: type III secretion system inner membrane P protein
YP_005700882.1	TIGRFAM: flagellar biosynthetic protein FliO; KEGG: dds:Ddes_0376 flagellar biosynthesis protein FliO
YP_005700883.1	KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein
YP_005700884.1	PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_3586 flagellar protein FliL
YP_005700885.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB
YP_005700886.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein
YP_005700887.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA
YP_005700888.1	PFAM: alanine racemase domain protein; KEGG: dde:Dde_3590 hypothetical protein
YP_005700889.1	KEGG: dds:Ddes_0371 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein
YP_005700890.1	KEGG: dds:Ddes_2081 sulphate transporter; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS
YP_005700891.1	PFAM: dihydrouridine synthase DuS; KEGG: dde:Dde_0389 dihydrouridine synthase family protein
YP_005700892.1	TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: dde:Dde_0390 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein
YP_005700893.1	KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver
YP_005700894.1	PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator
YP_005700895.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tbd:Tbd_2532 secretion protein HlyD
YP_005700896.1	PFAM: acriflavin resistance protein; KEGG: lhk:LHK_02826 probable transmembrane drug efflux protein
YP_005700897.1	KEGG: cvi:CV_0435 multidrug efflux membrane permease; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_005700898.1	KEGG: dma:DMR_28420 efflux system protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein
YP_005700899.1	KEGG: lhk:LHK_02931 OprM; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein
YP_005700900.1	KEGG: pmy:Pmen_1814 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_005700901.1	KEGG: dsa:Desal_3410 hypothetical protein
YP_005700902.1	KEGG: dma:DMR_43820 hypothetical protein
YP_005700903.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: tai:Taci_1657 CMP/dCMP deaminase zinc-binding protein
YP_005700904.1	manually curated; KEGG: ecb:100065359 similar to ceroid-lipofuscinosis, neuronal 6, late infantile, variant
YP_005700905.1	KEGG: dde:Dde_3625 hypothetical protein
YP_005700906.1	KEGG: dde:Dde_3624 hypothetical protein
YP_005700907.1	PFAM: metallophosphoesterase; KEGG: dde:Dde_3623 Ser/Thr protein phosphatase family protein
YP_005700908.1	KEGG: dde:Dde_3621 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein
YP_005700909.1	KEGG: dde:Dde_3694 glucose-1-phosphate cytidylyl-transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase
YP_005700910.1	KEGG: dds:Ddes_0876 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005700911.1	KEGG: dds:Ddes_0875 polysaccharide biosynthesis domain-containing protein
YP_005700912.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dds:Ddes_2174 DegT/DnrJ/EryC1/StrS aminotransferase
YP_005700913.1	PFAM: glycosyl transferase family 2; KEGG: dds:Ddes_2171 glycosyl transferase family 2
YP_005700914.1	KEGG: dde:Dde_0097 hypothetical protein
YP_005700915.1	KEGG: rce:RC1_2569 hypothetical protein
YP_005700916.1	PFAM: zinc/iron permease; KEGG: aco:Amico_0219 zinc/iron permease
YP_005700917.1	KEGG: dde:Dde_0240 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like
YP_005700918.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: dde:Dde_0239 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein
YP_005700919.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0236 hypothetical protein
YP_005700920.1	PFAM: protein of unknown function DUF309; KEGG: dma:DMR_33670 hypothetical protein
YP_005700921.1	TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: dde:Dde_0076 translation initiation factor 2B subunit I; PFAM: initiation factor 2B related
YP_005700922.1	KEGG: dde:Dde_0079 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_005700923.1	PFAM: protein of unknown function DUF997; KEGG: dde:Dde_3322 membrane protein-like
YP_005700924.1	KEGG: dde:Dde_3321 sodium/panthothenate symporter; TIGRFAM: sodium/pantothenate symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter
YP_005700925.1	PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0374 hypothetical protein
YP_005700926.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: nhl:Nhal_1333 NAD-dependent epimerase/dehydratase
YP_005700927.1	KEGG: cyh:Cyan8802_0670 protein of unknown function DUF88
YP_005700928.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005700929.1	KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein; PFAM: glycosyl transferase group 1; PHP domain protein; SMART: phosphoesterase PHP domain protein
YP_005700930.1	KEGG: dde:Dde_1752 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005700931.1	PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_3673 polyamine ABC transporter, periplasmic polyamine-binding protein
YP_005700932.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0831 spermidine/putrescine ABC transporter membrane protein
YP_005700933.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0830 ABC-type spermidine/putrescine transport system, permease component I
YP_005700934.1	TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: dde:Dde_3670 putrescine/spermidine ABC transporter ATPase protein; SMART: AAA ATPase
YP_005700935.1	KEGG: sfu:Sfum_3705 TonB protein; TIGRFAM: TonB family protein; PFAM: TonB domain
YP_005700936.1	PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: hch:HCH_02841 TonB-dependent receptor family protein
YP_005700937.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dae:Dtox_0549 methyltransferase type 11
YP_005700938.1	PFAM: periplasmic solute binding protein; KEGG: dau:Daud_1151 periplasmic solute binding protein
YP_005700939.1	KEGG: dau:Daud_1150 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005700940.1	PFAM: ABC-3 protein; KEGG: dau:Daud_1149 ABC-3 protein
YP_005700941.1	KEGG: dde:Dde_0166 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005700942.1	KEGG: dde:Dde_0167 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005700943.1	KEGG: dde:Dde_0168 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor
YP_005700944.1	KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005700945.1	KEGG: dma:DMR_16180 NtrC family two-component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005700946.1	KEGG: dde:Dde_0178 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005700947.1	PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dde:Dde_0179 deoxyribodipyrimidine photo-lyase type II
YP_005700948.1	KEGG: dde:Dde_3567 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase
YP_005700949.1	TIGRFAM: ATP phosphoribosyltransferase; KEGG: dde:Dde_3566 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain
YP_005700950.1	KEGG: dde:Dde_3564 shikimate dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase
YP_005700951.1	PFAM: polysaccharide deacetylase; KEGG: gsu:GSU0659 polysaccharide deacetylase domain-containing protein
YP_005700952.1	PFAM: glycosyl transferase family 2; KEGG: dsa:Desal_0966 glycosyl transferase family 2
YP_005700953.1	KEGG: tye:THEYE_A0124 acetoacetate metabolism regulatory protein AtoC; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005700954.1	KEGG: glo:Glov_1152 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein
YP_005700955.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: glo:Glov_1153 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_005700956.1	KEGG: drm:Dred_1860 UspA domain-containing protein
YP_005700958.1	PFAM: Uncharacterised protein family UPF0324; KEGG: drm:Dred_1861 hypothetical protein
YP_005700960.1	PFAM: secretion protein HlyD family protein; KEGG: vap:Vapar_1741 secretion protein HlyD family protein
YP_005700961.1	KEGG: slt:Slit_2512 ABC transporter related protein; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase
YP_005700962.1	PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter
YP_005700963.1	PFAM: protein of unknown function UPF0118; KEGG: lip:LI0472 permease
YP_005700964.1	TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; KEGG: putative PAS/PAC sensor protein; SMART: metal-dependent phosphohydrolase HD region; PAS domain containing protein; PAC repeat-containing protein
YP_005700965.1	KEGG: hmo:HM1_1613 phosphoglycolate phosphatase, putative; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_005700966.1	PFAM: protein of unknown function DUF81; KEGG: dma:DMR_16160 hypothetical membrane protein
YP_005700967.1	KEGG: sfu:Sfum_0645 hypothetical protein
YP_005700968.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3612 glycosyl transferase, group 2 family protein
YP_005700969.1	PFAM: PP-loop domain protein; KEGG: dds:Ddes_2277 PP-loop domain protein
YP_005700970.1	KEGG: dds:Ddes_0034 hypothetical protein
YP_005700972.1	KEGG: dde:Dde_3609 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005700973.1	KEGG: dol:Dole_1356 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005700974.1	KEGG: dal:Dalk_2251 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005700975.1	PFAM: peptidase M50; KEGG: dde:Dde_3608 M50 family peptidase
YP_005700976.1	TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: dde:Dde_3607 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib
YP_005700977.1	PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3606 hypothetical protein
YP_005700978.1	KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase
YP_005700979.1	KEGG: sfu:Sfum_0648 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005700980.1	KEGG: dds:Ddes_1638 hypothetical protein
YP_005700981.1	KEGG: dma:DMR_42260 hypothetical protein
YP_005700982.1	KEGG: sfu:Sfum_0627 putative lipoprotein
YP_005700983.1	PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 hypothetical protein
YP_005700984.1	KEGG: sfu:Sfum_0625 hypothetical protein
YP_005700985.1	KEGG: dds:Ddes_1643 sigma 54 interacting domain protein; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase
YP_005700986.1	KEGG: dds:Ddes_1644 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region
YP_005700987.1	KEGG: dde:Dde_3573 hypothetical protein
YP_005700988.1	PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein
YP_005700989.1	PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD
YP_005700990.1	TIGRFAM: thiamine-monophosphate kinase; KEGG: dsa:Desal_2336 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_005700991.1	PFAM: class II aldolase/adducin family protein; Uncharacterised protein family UPF0066; KEGG: dde:Dde_3569 hypothetical protein
YP_005700992.1	PFAM: thioesterase superfamily protein; KEGG: dba:Dbac_1797 thioesterase superfamily protein
YP_005700993.1	SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: dde:Dde_0335 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein
YP_005700994.1	KEGG: swi:Swit_2951 acyltransferase 3
YP_005700995.1	KEGG: dde:Dde_0334 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase
YP_005700996.1	KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein
YP_005700997.1	KEGG: dma:DMR_44310 hypothetical protein; manually curated; PFAM: Dihaem cytochrome c
YP_005700998.1	KEGG: drt:Dret_1021 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein
YP_005700999.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_0271 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase
YP_005701000.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_0272 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase
YP_005701001.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter, permease protein
YP_005701002.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter, permease protein
YP_005701003.1	PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein
YP_005701004.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: dsa:Desal_0932 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_005701005.1	PFAM: aminotransferase class I and II; KEGG: pde:Pden_0648 aminotransferase, class I and II
YP_005701006.1	KEGG: tye:THEYE_A1127 anaerobic dimethyl sulfoxide reductase chain B
YP_005701007.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dba:Dbac_2860 molybdopterin oxidoreductase
YP_005701008.1	PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dba:Dbac_1566 formylmethanofuran dehydrogenase subunit E region
YP_005701009.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfu:Sfum_0868 glycerophosphoryl diester phosphodiesterase
YP_005701010.1	KEGG: dds:Ddes_0168 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1
YP_005701011.1	PFAM: TOBE domain-containing protein; integrase family protein; KEGG: dba:Dbac_1580 TOBE domain protein
YP_005701012.1	KEGG: sfu:Sfum_3696 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701013.1	KEGG: dds:Ddes_0169 molybdate ABC transporter, inner membrane subunit; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005701014.1	PFAM: Radical SAM domain protein; KEGG: dsa:Desal_1058 radical SAM domain protein
YP_005701015.1	KEGG: dma:DMR_12590 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005701016.1	PFAM: protein of unknown function DUF169; KEGG: drt:Dret_2437 protein of unknown function DUF169
YP_005701017.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dhd:Dhaf_0017 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005701018.1	KEGG: bvi:Bcep1808_6854 hypothetical protein
YP_005701019.1	TIGRFAM: seryl-tRNA synthetase; KEGG: dde:Dde_0196 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like
YP_005701020.1	KEGG: dde:Dde_0197 hypothetical protein
YP_005701021.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0203 hypothetical protein
YP_005701022.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein
YP_005701023.1	PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 SecC motif-containing protein
YP_005701024.1	KEGG: dde:Dde_0206 hypothetical protein
YP_005701025.1	KEGG: sat:SYN_02957 hypothetical protein
YP_005701026.1	KEGG: dma:DMR_15800 putative sensor histidine kinase
YP_005701027.1	KEGG: dma:DMR_38730 putative phosphatase; PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain
YP_005701028.1	KEGG: acetylornithine and succinylornithine aminotransferase
YP_005701029.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase
YP_005701030.1	KEGG: dde:Dde_0603 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005701031.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005701032.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein
YP_005701033.1	KEGG: dds:Ddes_1653 hypothetical protein
YP_005701034.1	PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_03470 hypothetical protein
YP_005701035.1	KEGG: dde:Dde_3604 oxidoreductase; PFAM: FAD linked oxidase domain protein
YP_005701036.1	KEGG: rha:RHA1_ro02179 hypothetical protein
YP_005701037.1	KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; Protein of unknown function DUF1998; SMART: DEAD-like helicase ; helicase domain protein
YP_005701038.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_3024 acetyltransferase
YP_005701039.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein
YP_005701040.1	KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005701041.1	KEGG: dde:Dde_3713 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005701042.1	PFAM: UspA domain-containing protein; KEGG: dde:Dde_3712 universal stress protein
YP_005701043.1	KEGG: dde:Dde_3711 hypothetical protein
YP_005701044.1	KEGG: dde:Dde_3710 acidic cytochrome c3
YP_005701045.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin, 4Fe-4S, putative
YP_005701046.1	KEGG: dde:Dde_3708 hypothetical protein
YP_005701047.1	KEGG: dde:Dde_3707 hypothetical protein
YP_005701048.1	KEGG: dde:Dde_3719 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074
YP_005701049.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein
YP_005701050.1	KEGG: dde:Dde_3717 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein
YP_005701051.1	KEGG: dde:Dde_1011 hypothetical protein
YP_005701052.1	KEGG: rno:310460 Src homology 3 domain-containing guanine nucleotide exchange factor
YP_005701053.1	KEGG: dde:Dde_0268 hypothetical protein
YP_005701054.1	PFAM: polysaccharide deacetylase; KEGG: dds:Ddes_0123 polysaccharide deacetylase
YP_005701055.1	PFAM: protein of unknown function DUF302; KEGG: cai:Caci_8650 protein of unknown function DUF302
YP_005701056.1	KEGG: dsa:Desal_3579 hypothetical protein
YP_005701057.1	KEGG: cts:Ctha_2308 transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain
YP_005701058.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_3083 glyoxalase family protein
YP_005701059.1	KEGG: dde:Dde_2506 sulfate permease; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS
YP_005701060.1	PFAM: glycosyl transferase group 1; KEGG: azl:AZL_c02670 glycosyltransferase group 1 family protein
YP_005701061.1	TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; KEGG: lip:LI0512 sugar transferases involved in lipopolysaccharide synthesis; PFAM: sugar transferase
YP_005701062.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; helix-hairpin-helix motif; KEGG: dde:Dde_0212 A/G-specific DNA-adenine glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop
YP_005701063.1	KEGG: dde:Dde_0210 AhpF family protein/thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005701064.1	KEGG: dmo:Dmoj_GI11326 GI11326 gene product from transcript GI11326-RA
YP_005701065.1	KEGG: dde:Dde_0209 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_005701066.1	KEGG: dde:Dde_0332 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I
YP_005701067.1	KEGG: dde:Dde_0331 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein
YP_005701068.1	PFAM: Methyltransferase type 11; KEGG: bur:Bcep18194_A4893 hypothetical protein
YP_005701069.1	KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC
YP_005701070.1	KEGG: shw:Sputw3181_2461 putative lipoprotein
YP_005701071.1	KEGG: dba:Dbac_0792 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701072.1	PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein
YP_005701073.1	manually curated; KEGG: dal:Dalk_1586 transcriptional regulator, TraR/DksA family
YP_005701074.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein
YP_005701075.1	PFAM: amine oxidase; KEGG: dde:Dde_0216 UDP-galactopyranose mutase
YP_005701076.1	PFAM: peptidase M24; creatinase; KEGG: dde:Dde_0217 M24 family peptidase
YP_005701077.1	manually curated; KEGG: dde:Dde_0181 hypothetical protein
YP_005701078.1	KEGG: dde:Dde_0372 hypothetical protein
YP_005701079.1	PFAM: protein of unknown function DUF1508; KEGG: cbl:CLK_1115 hypothetical protein
YP_005701080.1	KEGG: dma:DMR_44720 anaerobic ribonucleoside-triphosphate reductase class III; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein
YP_005701081.1	manually curated; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein; PFAM: Radical SAM domain protein
YP_005701082.1	PFAM: CheC domain protein; KEGG: dde:Dde_0281 chemotaxis protein CheX, putative
YP_005701083.1	KEGG: dde:Dde_0282 TPR repeat-containing protein
YP_005701084.1	KEGG: dde:Dde_0283 hypothetical protein
YP_005701085.1	KEGG: dde:Dde_0286 ferredoxin II
YP_005701086.1	KEGG: lip:LI0584 hypothetical protein
YP_005701087.1	KEGG: dde:Dde_0298 flagella basal body rod domain-containing protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein
YP_005701088.1	PFAM: transmembrane pair domain-containing protein; KEGG: dde:Dde_0348 hypothetical protein
YP_005701089.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dde:Dde_0349 LysR family transcriptional regulator
YP_005701090.1	TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: dde:Dde_0350 ATPase FliI/YscN; SMART: AAA ATPase
YP_005701091.1	PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: dde:Dde_0351 flagellar assembly protein FliH, putative
YP_005701092.1	KEGG: dde:Dde_0352 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region
YP_005701093.1	KEGG: dde:Dde_0353 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein
YP_005701094.1	KEGG: dde:Dde_0354 flagellar hook-basal body complex protein (FliE); TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE
YP_005701095.1	KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein
YP_005701096.1	KEGG: lip:LI0860 flagellar basal body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein
YP_005701097.1	KEGG: dde:Dde_0357 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_005701098.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_0109 NAD-dependent epimerase/dehydratase
YP_005701099.1	KEGG: dde:Dde_0288 hypothetical protein
YP_005701100.1	KEGG: dde:Dde_0294 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor
YP_005701101.1	TIGRFAM: enolase; KEGG: dde:Dde_0295 phosphopyruvate hydratase; PFAM: Enolase-like
YP_005701102.1	KEGG: dde:Dde_0296 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_005701103.1	KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein
YP_005701104.1	KEGG: dde:Dde_0363 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_005701105.1	KEGG: dds:Ddes_0107 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; sugar transferase, PEP-CTERM system associated; PFAM: sugar transferase
YP_005701106.1	PFAM: glycosyl transferase group 1; KEGG: dds:Ddes_0108 glycosyl transferase group 1
YP_005701107.1	KEGG: dma:DMR_27280 response regulator receiver protein; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; SMART: response regulator receiver
YP_005701108.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; KEGG: dma:DMR_38800 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein
YP_005701109.1	KEGG: dma:DMR_20340 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_005701110.1	TIGRFAM: D-alanine/D-alanine ligase; KEGG: dde:Dde_0366 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein
YP_005701111.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase, putative
YP_005701112.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like
YP_005701113.1	KEGG: dds:Ddes_2311 hypothetical protein
YP_005701114.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dds:Ddes_2045 haloacid dehalogenase domain protein hydrolase
YP_005701115.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein
YP_005701116.1	KEGG: dds:Ddes_2046 transferase hexapeptide repeat containing protein
YP_005701117.1	KEGG: dde:Dde_3687 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_005701118.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_2048 NAD-dependent epimerase/dehydratase
YP_005701119.1	PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein
YP_005701120.1	KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005701121.1	PFAM: polysaccharide biosynthesis protein; KEGG: dds:Ddes_2111 polysaccharide biosynthesis protein
YP_005701122.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: dds:Ddes_0078 transferase hexapeptide repeat containing protein
YP_005701123.1	KEGG: dds:Ddes_1889 hypothetical protein
YP_005701124.1	KEGG: dds:Ddes_1890 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein
YP_005701125.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: dds:Ddes_2209 acylneuraminate cytidylyltransferase
YP_005701126.1	KEGG: dds:Ddes_2211 cytidine 5'monophosphate N-acetylneuraminic acid synthetase
YP_005701127.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dds:Ddes_2212 DegT/DnrJ/EryC1/StrS aminotransferase
YP_005701128.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dds:Ddes_2213 iron-containing alcohol dehydrogenase
YP_005701129.1	KEGG: pol:Bpro_0121 hypothetical protein
YP_005701130.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_0211 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein
YP_005701131.1	KEGG: dde:Dde_3701 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase
YP_005701132.1	KEGG: dde:Dde_3758 hypothetical protein
YP_005701133.1	KEGG: cpy:Cphy_1665 hypothetical protein
YP_005701134.1	PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein
YP_005701135.1	KEGG: dde:Dde_0398 acetolactate synthase catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein
YP_005701136.1	PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_0399 acetolactate synthase 1 regulatory subunit
YP_005701137.1	PFAM: aminotransferase class IV; KEGG: dde:Dde_3619 hypothetical protein
YP_005701138.1	PFAM: Chorismate binding-like; KEGG: dde:Dde_3618 aminodeoxychorismate synthase, subunit I
YP_005701139.1	PFAM: glutamine amidotransferase class-I; KEGG: dde:Dde_3617 aminodeoxychorismate synthase, glutamine amidotransferase subunit
YP_005701140.1	PFAM: protein of unknown function DUF152; KEGG: dde:Dde_3616 hypothetical protein
YP_005701141.1	KEGG: dma:DMR_23210 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase
YP_005701143.1	PFAM: metallophosphoesterase; KEGG: dds:Ddes_0792 metallophosphoesterase
YP_005701144.1	KEGG: dde:Dde_1011 hypothetical protein
YP_005701145.1	KEGG: dsa:Desal_0260 hypothetical protein
YP_005701146.1	SMART: CoA-binding domain protein; KEGG: dba:Dbac_3164 CoA-binding domain-containing protein
YP_005701147.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dba:Dbac_3081 indolepyruvate ferredoxin oxidoreductase
YP_005701148.1	PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rop:ROP_27680 putative Glu/Leu/Phe/Val dehydrogenase family protein
YP_005701149.1	KEGG: dsa:Desal_1364 hypothetical protein
YP_005701150.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsa:Desal_1363 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005701151.1	PFAM: glutaredoxin; KEGG: dsa:Desal_1362 thioredoxin domain protein
YP_005701152.1	PFAM: cyclic nucleotide-binding; KEGG: dsa:Desal_1361 transcriptional regulator, TrmB
YP_005701153.1	PFAM: sulfatase; KEGG: dsa:Desal_1360 sulfatase
YP_005701154.1	KEGG: dsa:Desal_1359 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like
YP_005701155.1	KEGG: dsa:Desal_2503 hypothetical protein
YP_005701156.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: dde:Dde_0187 flavoredoxin
YP_005701157.1	KEGG: dde:Dde_0186 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_005701158.1	KEGG: dde:Dde_0185 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005701159.1	KEGG: dde:Dde_0184 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701160.1	KEGG: dde:Dde_0183 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005701161.1	KEGG: dde:Dde_0182 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein
YP_005701162.1	PFAM: YaeQ family protein; KEGG: dde:Dde_0512 hypothetical protein
YP_005701163.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_0513 aminotransferase
YP_005701164.1	KEGG: dde:Dde_0514 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily
YP_005701165.1	KEGG: dma:DMR_02290 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005701166.1	PFAM: histidine triad (HIT) protein; KEGG: drt:Dret_2237 histidine triad (HIT) protein
YP_005701167.1	KEGG: dde:Dde_0517 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_005701168.1	KEGG: dde:Dde_0519 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein
YP_005701169.1	PFAM: pyruvate carboxyltransferase; Cache domain protein; KEGG: dde:Dde_0520 HMGL-like domain-containing protein
YP_005701170.1	KEGG: dde:Dde_0521 hypothetical protein
YP_005701171.1	KEGG: dde:Dde_0523 hypothetical protein
YP_005701172.1	KEGG: dde:Dde_0524 hypothetical protein
YP_005701173.1	TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region
YP_005701174.1	TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein
YP_005701175.1	PFAM: Dissimilatory sulfite reductase D; KEGG: dsa:Desal_0789 dissimilatory sulfite reductase D
YP_005701176.1	KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase
YP_005701177.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0530 hypothetical protein
YP_005701178.1	KEGG: nmi:NMO_1770 rare lipoprotein A family protein; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein
YP_005701179.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold-4 domain protein; KEGG: dde:Dde_0532 response regulator receiver/GGDEF/PAS/PAC domain-containing protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein
YP_005701180.1	KEGG: dde:Dde_0563 hypothetical protein
YP_005701181.1	KEGG: dde:Dde_0564 hypothetical protein
YP_005701182.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein
YP_005701183.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dde:Dde_0566 potassium uptake protein TrkA, putative
YP_005701184.1	KEGG: dde:Dde_0567 TrkH family potassium uptake protein; PFAM: cation transporter
YP_005701185.1	PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: dsa:Desal_0725 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
YP_005701186.1	KEGG: dde:Dde_0568 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein
YP_005701187.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005701188.1	KEGG: dds:Ddes_0901 arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_005701189.1	PFAM: Saccharopine dehydrogenase; KEGG: dba:Dbac_2320 saccharopine dehydrogenase
YP_005701190.1	KEGG: dde:Dde_0573 carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_005701191.1	KEGG: dsi:Dsim_GD13772 GD13772 gene product from transcript GD13772-RA
YP_005701192.1	KEGG: bid:Bind_2238 (glutamate--ammonia-ligase) adenylyltransferase
YP_005701193.1	KEGG: dde:Dde_0574 agmatinase, putative; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase
YP_005701194.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; PAS fold-4 domain protein; GGDEF domain containing protein; KEGG: slt:Slit_2517 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein
YP_005701195.1	PFAM: UspA domain-containing protein; KEGG: dde:Dde_0589 universal stress protein
YP_005701196.1	KEGG: dde:Dde_0590 cardiolipin synthetase 2; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase
YP_005701197.1	KEGG: dde:Dde_0591 hypothetical protein
YP_005701198.1	KEGG: mfe:Mefer_1074 chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter
YP_005701199.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: antibiotic biosynthesis monooxygenase
YP_005701201.1	KEGG: dma:DMR_02780 Ech hydrogenase subunit EchF
YP_005701202.1	PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dma:DMR_02770 Ech hydrogenase subunit EchE
YP_005701203.1	PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dma:DMR_02760 putative Ech hydrogenase subunit EchD
YP_005701204.1	PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dma:DMR_02750 Ech hydrogenase subunit EchC
YP_005701205.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dma:DMR_02740 Ech hydrogenase subunit EchB
YP_005701206.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: dma:DMR_02730 Ech hydrogenase subunit EchA
YP_005701207.1	PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator
YP_005701208.1	KEGG: dds:Ddes_0900 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_005701209.1	PFAM: acriflavin resistance protein; KEGG: gur:Gura_2371 acriflavin resistance protein
YP_005701210.1	PFAM: YCII-related; KEGG: dma:DMR_24110 hypothetical protein
YP_005701211.1	KEGG: tai:Taci_0502 protein of unknown function DUF1063
YP_005701212.1	TIGRFAM: adenine deaminase; KEGG: amt:Amet_4567 adenine deaminase; PFAM: amidohydrolase
YP_005701213.1	KEGG: dba:Dbac_2706 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc
YP_005701214.1	KEGG: afw:Anae109_4029 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_005701215.1	KEGG: afw:Anae109_0817 CBS domain-containing protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; SMART: CBS domain containing protein
YP_005701216.1	KEGG: dba:Dbac_1022 cyclic nucleotide-binding protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein
YP_005701217.1	KEGG: dba:Dbac_1021 SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter
YP_005701218.1	PFAM: protein of unknown function DUF485; KEGG: dma:DMR_19740 hypothetical membrane protein
YP_005701219.1	KEGG: dds:Ddes_0412 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005701220.1	TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; ATP-binding region ATPase domain protein; response regulator receiver; MCP methyltransferase CheR-type; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_36600 putative chemotaxis CheB/CheR fusion protein; SMART: MCP methyltransferase CheR-type; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein
YP_005701221.1	KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase
YP_005701222.1	PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; KEGG: dde:Dde_3504 chloride channel family protein
YP_005701223.1	PFAM: methyltransferase small; KEGG: drt:Dret_0713 methyltransferase small
YP_005701224.1	PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD
YP_005701225.1	KEGG: dde:Dde_3498 hypothetical protein
YP_005701226.1	KEGG: dde:Dde_3496 hypothetical protein
YP_005701227.1	PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein
YP_005701228.1	KEGG: pth:PTH_0666 signaling protein; PFAM: EAL domain protein; SMART: EAL domain protein
YP_005701230.1	TIGRFAM: predicted phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: dde:Dde_3489 fructose-bisphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_005701231.1	PFAM: 3-dehydroquinate synthase; KEGG: dde:Dde_3488 3-dehydroquinate synthase
YP_005701232.1	KEGG: dde:Dde_3487 prephenate dehydratase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein
YP_005701233.1	TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: dde:Dde_3486 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YP_005701234.1	PFAM: Prephenate dehydrogenase; KEGG: dde:Dde_3485 prephenate dehydrogenase
YP_005701235.1	KEGG: dde:Dde_3484 anthranilate synthase, component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein
YP_005701236.1	KEGG: dds:Ddes_1591 anthranilate phosphoribosyltransferase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I
YP_005701237.1	TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like
YP_005701238.1	KEGG: amu:Amuc_1533 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase
YP_005701239.1	KEGG: dma:DMR_05270 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
YP_005701240.1	KEGG: dds:Ddes_1588 tryptophan synthase, beta subunit; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_005701241.1	TIGRFAM: tryptophan synthase, alpha subunit; KEGG: dde:Dde_3478 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain
YP_005701242.1	PFAM: Integrase catalytic region; KEGG: glo:Glov_1005 integrase catalytic region
YP_005701243.1	KEGG: dde:Dde_3476 isocitrate dehydrogenase (NADP); PFAM: isocitrate/isopropylmalate dehydrogenase
YP_005701244.1	PFAM: metallophosphoesterase; KEGG: dde:Dde_3469 serine/threonine protein phosphatase family protein
YP_005701245.1	KEGG: dde:Dde_3468 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain
YP_005701246.1	PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein
YP_005701247.1	KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6-epimerase precursor; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_005701248.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3465 putative PAS/PAC sensor protein; SMART: response regulator receiver; PAS domain containing protein
YP_005701249.1	KEGG: dde:Dde_3464 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein
YP_005701250.1	KEGG: dsa:Desal_0914 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701251.1	PFAM: Conserved hypothetical protein CHP00245; KEGG: dde:Dde_3461 hypothetical protein
YP_005701252.1	KEGG: dde:Dde_3460 hypothetical protein
YP_005701253.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_005701254.1	TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain
YP_005701255.1	KEGG: dde:Dde_3457 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase
YP_005701256.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_3456 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_005701257.1	TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: dma:DMR_05160 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region
YP_005701258.1	PFAM: Domain of unknown function DUF1844; KEGG: dde:Dde_3453 hypothetical protein
YP_005701259.1	PFAM: aminotransferase class V; KEGG: dde:Dde_3452 aminotransferase, class V
YP_005701260.1	KEGG: dde:Dde_3451 SAM-dependent methyltransferase
YP_005701261.1	TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; KEGG: dde:Dde_3450 DNA polymerase I; SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2
YP_005701262.1	KEGG: dde:Dde_3449 hypothetical protein
YP_005701263.1	KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein, putative
YP_005701264.1	PFAM: protein of unknown function UPF0047; KEGG: dsa:Desal_0262 protein of unknown function UPF0047
YP_005701265.1	TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3
YP_005701266.1	KEGG: dds:Ddes_0053 hypothetical protein
YP_005701267.1	manually curated; KEGG: dde:Dde_3169 hypothetical protein
YP_005701268.1	SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein
YP_005701269.1	KEGG: dds:Ddes_0055 ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15
YP_005701270.1	KEGG: dde:Dde_3165 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein
YP_005701271.1	PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein
YP_005701272.1	PFAM: protein of unknown function DUF503; KEGG: dde:Dde_3163 hypothetical protein
YP_005701273.1	KEGG: dds:Ddes_0059 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein
YP_005701274.1	PFAM: protein of unknown function DUF448; KEGG: drt:Dret_0496 protein of unknown function DUF448
YP_005701275.1	KEGG: dde:Dde_3161 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein
YP_005701276.1	PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein
YP_005701277.1	KEGG: dde:Dde_3159 flagellar basal-body rod protein, putative; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein
YP_005701278.1	KEGG: dde:Dde_3158 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein
YP_005701279.1	TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: dds:Ddes_0393 flagella basal body P-ring formation protein FlgA
YP_005701280.1	PFAM: flagellar L-ring protein; KEGG: dde:Dde_3156 flagellar basal body L-ring protein
YP_005701281.1	PFAM: flagellar P-ring protein; KEGG: dds:Ddes_2004 flagellar P-ring protein
YP_005701282.1	PFAM: Peptidase M23; Flagellar protein FlgJ-like; KEGG: dde:Dde_3154 membrane proteins, metalloendopeptidase-like
YP_005701283.1	PFAM: FlgN family protein; KEGG: lip:LI0746 hypothetical protein
YP_005701284.1	KEGG: dde:Dde_3152 flagellar hook-associated protein; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein
YP_005701285.1	KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein
YP_005701286.1	KEGG: dde:Dde_3150 carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator
YP_005701287.1	PFAM: protein of unknown function DUF180; KEGG: dde:Dde_3149 flagellar assembly protein FliW
YP_005701288.1	KEGG: dde:Dde_0638 putative anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein
YP_005701289.1	KEGG: dde:Dde_0639 hypothetical protein
YP_005701290.1	KEGG: dal:Dalk_1623 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_005701291.1	PFAM: major facilitator superfamily MFS_1; KEGG: dma:DMR_05200 putative drug resistance transporter
YP_005701292.1	KEGG: dde:Dde_0640 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein
YP_005701293.1	PFAM: phosphatidylglycerophosphatase A; KEGG: dde:Dde_0641 phosphatidylglycerophosphatase
YP_005701294.1	KEGG: dde:Dde_0647 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074
YP_005701295.1	KEGG: drt:Dret_0869 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005701296.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6
YP_005701297.1	KEGG: dde:Dde_0649 hmc operon protein 5
YP_005701298.1	KEGG: dde:Dde_0650 hmc operon protein 4
YP_005701299.1	PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3
YP_005701300.1	KEGG: dde:Dde_0652 hypothetical protein
YP_005701301.1	PFAM: Cytochrome c, class III, conserved region; cytochrome c class I; KEGG: dde:Dde_0653 high-molecular-weight cytochrome c
YP_005701302.1	PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: dde:Dde_0655 AP endonuclease
YP_005701303.1	KEGG: drt:Dret_0970 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005701304.1	KEGG: dma:DMR_33170 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005701305.1	PFAM: UspA domain-containing protein; KEGG: dma:DMR_33160 putative universal stress protein
YP_005701306.1	PFAM: Uncharacterised protein family UPF0324; KEGG: dma:DMR_33150 hypothetical membrane protein
YP_005701307.1	KEGG: dds:Ddes_0931 hypothetical protein
YP_005701308.1	KEGG: dds:Ddes_0932 hypothetical protein
YP_005701309.1	PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein
YP_005701310.1	PFAM: inner-membrane translocator; KEGG: dba:Dbac_2501 inner-membrane translocator
YP_005701311.1	PFAM: inner-membrane translocator; KEGG: dba:Dbac_2500 inner-membrane translocator
YP_005701312.1	KEGG: dsa:Desal_1549 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701313.1	KEGG: dde:Dde_0608 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701314.1	PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3057 glycosyl transferase family protein
YP_005701315.1	KEGG: cpb:Cphamn1_2145 NAD-dependent epimerase/dehydratase; manually curated; PFAM: NAD-dependent epimerase/dehydratase
YP_005701316.1	PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_3289 transposase IS3/IS911 family protein
YP_005701317.1	manually curated; KEGG: cli:Clim_1959 hypothetical protein
YP_005701318.1	manually curated; KEGG: cyn:Cyan7425_3799 methyltransferase type 11
YP_005701319.1	PFAM: glycosyl transferase group 1; KEGG: dap:Dacet_1892 glycosyl transferase group 1
YP_005701320.1	PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_2193 transposase IS3/IS911 family protein
YP_005701321.1	KEGG: dba:Dbac_2192 integrase catalytic region; manually curated; PFAM: Integrase catalytic region
YP_005701322.1	KEGG: glo:Glov_1005 integrase catalytic region
YP_005701323.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: dds:Ddes_0156 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_005701324.1	KEGG: dds:Ddes_0158 putative phytochrome sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein
YP_005701325.1	PFAM: Integral membrane protein TerC; KEGG: sat:SYN_01926 tellurium resistance protein
YP_005701326.1	TIGRFAM: tRNA 2-selenouridine synthase; PFAM: Rhodanese domain protein; KEGG: sli:Slin_4991 tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein
YP_005701327.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; amino acid-binding ACT domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_1552 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein
YP_005701328.1	TIGRFAM: alanine dehydrogenase; KEGG: dde:Dde_1553 L-alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein
YP_005701329.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein
YP_005701330.1	PFAM: CreA family protein; KEGG: app:CAP2UW1_0671 CreA family protein
YP_005701331.1	KEGG: tai:Taci_1481 hypothetical protein
YP_005701332.1	KEGG: dds:Ddes_1270 hypothetical protein
YP_005701333.1	TIGRFAM: methionine-R-sulfoxide reductase; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B
YP_005701334.1	PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE, putative
YP_005701335.1	PFAM: formate dehydrogenase subunit FdhD; KEGG: dde:Dde_0707 formate dehydrogenase accessory protein FdhD, putative
YP_005701336.1	KEGG: dde:Dde_0708 molybdopterin-guanine dinucleotide biosynthesis protein A, putative
YP_005701337.1	TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; SMART: Elongator protein 3/MiaB/NifB
YP_005701338.1	KEGG: dsa:Desal_1123 anti-sigma-factor antagonist; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005701339.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005701340.1	PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0712 putative lipoprotein
YP_005701341.1	KEGG: dde:Dde_0714 transposase, putative
YP_005701342.1	KEGG: dat:HRM2_13300 hypothetical protein
YP_005701343.1	KEGG: dde:Dde_0814 hypothetical protein
YP_005701344.1	PFAM: molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: dde:Dde_0716 formate dehydrogenase
YP_005701345.1	TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: dde:Dde_0717 formate dehydrogenase, alpha subunit, anaerobic; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region
YP_005701346.1	KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative
YP_005701347.1	PFAM: Fe-S cluster domain protein; KEGG: dde:Dde_0719 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein
YP_005701348.1	KEGG: dde:Dde_0490 hypothetical protein
YP_005701349.1	KEGG: dsa:Desal_0892 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer
YP_005701350.1	KEGG: dsa:Desal_3034 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein
YP_005701351.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dsa:Desal_2540 lysine exporter protein (LysE/YggA)
YP_005701352.1	KEGG: dal:Dalk_5021 chromosome replication initiation inhibitor protein; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR
YP_005701353.1	KEGG: dde:Dde_2602 hypothetical protein
YP_005701354.1	KEGG: dma:DMR_32980 sensory transduction protein LytR; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver
YP_005701355.1	KEGG: dma:DMR_32990 sensor protein LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein
YP_005701356.1	PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A, putative
YP_005701357.1	PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A, putative
YP_005701358.1	KEGG: chl:Chy400_1816 L-lactate dehydrogenase; TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase
YP_005701359.1	PFAM: thioesterase superfamily protein; KEGG: alv:Alvin_0253 thioesterase superfamily protein
YP_005701360.1	PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein
YP_005701361.1	KEGG: bvu:BVU_0460 hypothetical protein
YP_005701362.1	KEGG: dde:Dde_3135 ArsR family transcriptional regulator; PFAM: Methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR
YP_005701363.1	TIGRFAM: adenosylhomocysteinase; KEGG: dde:Dde_3134 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding
YP_005701364.1	KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005701365.1	PFAM: protein of unknown function DUF330; KEGG: dsh:Dshi_2047 hypothetical protein
YP_005701366.1	PFAM: Mammalian cell entry related domain protein; KEGG: pla:Plav_2514 hypothetical protein
YP_005701367.1	KEGG: rce:RC1_1442 D-methionine transport ATP-binding protein MetN; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701368.1	PFAM: protein of unknown function DUF140; KEGG: azl:AZL_e01940 ABC transport system permease protein
YP_005701369.1	KEGG: dds:Ddes_0085 hypothetical protein
YP_005701370.1	KEGG: eba:ebA5995 membrane-associated Zn-dependent protease
YP_005701371.1	KEGG: dsa:Desal_1330 hypothetical protein
YP_005701372.1	KEGG: dsa:Desal_1331 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase
YP_005701373.1	KEGG: dsa:Desal_1392 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP
YP_005701374.1	KEGG: dds:Ddes_0084 putative two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase
YP_005701375.1	KEGG: dds:Ddes_0083 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005701376.1	KEGG: dds:Ddes_0082 NapC/NirT cytochrome c family protein; TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein
YP_005701377.1	KEGG: dba:Dbac_2097 nitrite reductase (cytochrome; ammonia-forming); PFAM: cytochrome c552
YP_005701378.1	KEGG: dde:Dde_3130 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein
YP_005701379.1	KEGG: dde:Dde_3129 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase
YP_005701380.1	KEGG: dde:Dde_3128 butyrate kinase; TIGRFAM: butyrate kinase; PFAM: acetate and butyrate kinase
YP_005701381.1	PFAM: regulatory protein TetR; KEGG: dde:Dde_3127 TetR family transcriptional regulator
YP_005701382.1	KEGG: dde:Dde_3125 hypothetical protein
YP_005701383.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: mba:Mbar_A1827 hypothetical protein
YP_005701384.1	TIGRFAM: penicillin-binding protein, 1A family; KEGG: dde:Dde_3124 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase
YP_005701385.1	KEGG: dde:Dde_3123 hypothetical protein
YP_005701386.1	KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein
YP_005701387.1	KEGG: zmn:Za10_1095 beta-lactamase
YP_005701388.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_06018 response regulator; SMART: GGDEF domain containing protein; response regulator receiver
YP_005701389.1	PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_3119 hypothetical protein
YP_005701390.1	KEGG: dde:Dde_3117 hypothetical protein
YP_005701391.1	PFAM: OmpA/MotB domain protein; KEGG: dsa:Desal_3352 OmpA/MotB domain protein
YP_005701392.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1717 chemotaxis protein PomA
YP_005701393.1	PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein
YP_005701394.1	PFAM: alpha/beta hydrolase fold; KEGG: bch:Bcen2424_5998 alpha/beta hydrolase fold
YP_005701395.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein, putative
YP_005701396.1	KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005701397.1	KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_005701398.1	PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative
YP_005701399.1	KEGG: dde:Dde_3105 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701400.1	PFAM: transport system permease protein; KEGG: dde:Dde_3104 iron compound ABC transporter, permease protein
YP_005701401.1	KEGG: dba:Dbac_1710 anaerobic cobalt chelatase; PFAM: anaerobic cobalt chelatase
YP_005701402.1	KEGG: dde:Dde_3102 hypothetical protein
YP_005701403.1	KEGG: lip:LI1117 chemotaxis signal transduction protein; PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein
YP_005701404.1	KEGG: dde:Dde_3097 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: AAA ATPase; response regulator receiver
YP_005701405.1	PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase
YP_005701406.1	KEGG: dde:Dde_3094 phosphoesterase PHP-like; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein
YP_005701407.1	PFAM: protein of unknown function DUF343; KEGG: dba:Dbac_3220 protein of unknown function DUF343
YP_005701408.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3092 HSP20 family protein
YP_005701409.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3091 HSP20 family protein
YP_005701410.1	KEGG: dds:Ddes_1303 hypothetical protein
YP_005701411.1	KEGG: dds:Ddes_1746 phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase
YP_005701412.1	PFAM: dihydrouridine synthase DuS; KEGG: dde:Dde_3089 dihydrouridine synthase family protein
YP_005701413.1	KEGG: ssc:100154622 similar to synapse defective 1, Rho GTPase, homolog 2
YP_005701414.1	KEGG: dde:Dde_3081 serine O-acetyltransferase
YP_005701415.1	KEGG: dde:Dde_3080 cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_005701416.1	TIGRFAM: cysteine desulfurase NifS; KEGG: dde:Dde_3079 cysteine desulfurase; PFAM: aminotransferase class V
YP_005701417.1	KEGG: dde:Dde_3078 Fe-S cluster assembly protein NifU; TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein
YP_005701418.1	KEGG: dde:Dde_3077 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_005701419.1	KEGG: dma:DMR_44230 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_005701420.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_005701421.1	KEGG: azl:AZL_f01770 hypothetical protein
YP_005701422.1	PFAM: O-antigen polymerase; KEGG: dba:Dbac_3295 O-antigen polymerase
YP_005701423.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1218 hypothetical protein
YP_005701424.1	KEGG: sgr:SGR_3147 hypothetical protein
YP_005701425.1	KEGG: dde:Dde_3071 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005701426.1	KEGG: dde:Dde_3070 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor
YP_005701427.1	KEGG: dde:Dde_3069 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005701428.1	manually curated; KEGG: dds:Ddes_0869 membrane-bound lytic murein transglycosylase B-like protein
YP_005701429.1	KEGG: dde:Dde_2952 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005701430.1	KEGG: dde:Dde_2951 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005701431.1	KEGG: dsa:Desal_1726 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein
YP_005701432.1	PFAM: CI repressor; Peptidase S24/S26A/S26B, conserved region; KEGG: dde:Dde_2949 DNA-binding protein, putative
YP_005701433.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: lip:LI0676 membrane protease subunits, stomatin/prohibitin homologs; SMART: band 7 protein
YP_005701434.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: lip:LI0675 membrane protease subunits, stomatin/prohibitin homologs; SMART: band 7 protein
YP_005701435.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: dde:Dde_2945 phosphomannomutase
YP_005701436.1	KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein
YP_005701437.1	PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2943 aldehyde:ferredoxin oxidoreductase, tungsten-containing, putative; SMART: Aldehyde ferredoxin oxidoreductase
YP_005701438.1	KEGG: dde:Dde_2942 hypothetical protein
YP_005701439.1	PFAM: ribonuclease H; KEGG: dde:Dde_2941 ribonuclease H
YP_005701440.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein
YP_005701441.1	KEGG: dds:Ddes_0036 nucleoside recognition domain protein
YP_005701442.1	KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative
YP_005701443.1	KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative
YP_005701444.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative
YP_005701445.1	KEGG: dde:Dde_2932 hypothetical protein
YP_005701446.1	TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase
YP_005701447.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: dde:Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_005701448.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: dsa:Desal_1903 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005701449.1	TIGRFAM: malate synthase G; KEGG: dma:DMR_26930 malate synthase; PFAM: Malate synthase family protein
YP_005701450.1	KEGG: dde:Dde_2858 cytochrome c family protein
YP_005701451.1	TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein LepA domain protein; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; KEGG: dds:Ddes_2193 GTP-binding protein LepA; SMART: elongation factor G domain-containing protein
YP_005701452.1	TIGRFAM: signal peptidase I; KEGG: dds:Ddes_0282 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region
YP_005701453.1	KEGG: app:CAP2UW1_3687 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_005701454.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dar:Daro_3390 tripartite ATP-independent periplasmic transporter DctQ
YP_005701455.1	KEGG: tmz:Tmz1t_0498 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7
YP_005701456.1	TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: lip:LI0751 Mg chelatase-related protein; SMART: AAA ATPase
YP_005701457.1	KEGG: dde:Dde_2770 hypothetical protein
YP_005701458.1	PFAM: Extracellular ligand-binding receptor; KEGG: dds:Ddes_0472 extracellular ligand-binding receptor
YP_005701459.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter, permease protein
YP_005701460.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter, permease protein
YP_005701461.1	KEGG: dde:Dde_0261 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701462.1	KEGG: dde:Dde_0262 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701463.1	KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein
YP_005701464.1	PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit
YP_005701465.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3113 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005701466.1	KEGG: dba:Dbac_0491 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver
YP_005701467.1	TIGRFAM: phosphoribosylglycinamide formyltransferase 2; KEGG: azo:azo1269 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
YP_005701468.1	KEGG: dde:Dde_2852 amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter
YP_005701469.1	KEGG: srm:SRM_01746 hypothetical protein
YP_005701470.1	TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: dde:Dde_2844 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase
YP_005701471.1	PFAM: Conserved hypothetical protein CHP02117; KEGG: fba:FIC_01478 hypothetical protein
YP_005701472.1	KEGG: dde:Dde_2843 hypothetical protein
YP_005701473.1	PFAM: Domain of unknown function DUF1848; KEGG: dde:Dde_2841 hypothetical protein
YP_005701474.1	KEGG: dde:Dde_2840 hypothetical protein
YP_005701475.1	KEGG: dds:Ddes_2073 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase
YP_005701476.1	KEGG: dsa:Desal_1295 hypothetical protein
YP_005701477.1	KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4
YP_005701478.1	PFAM: MOSC domain containing protein; KEGG: dde:Dde_2836 MOSC domain-containing protein
YP_005701479.1	KEGG: dds:Ddes_2208 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein
YP_005701480.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2832 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005701481.1	PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_01770 putative ABC transporter substrate binding protein
YP_005701482.1	PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein
YP_005701483.1	PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_2829 hypothetical protein
YP_005701484.1	KEGG: lip:LI0565 hypothetical protein
YP_005701485.1	PFAM: UspA domain-containing protein; KEGG: dde:Dde_2827 hypothetical protein
YP_005701486.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2826 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005701487.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_2825 Fis family transcriptional regulator; SMART: response regulator receiver; PAS domain containing protein; AAA ATPase
YP_005701488.1	PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0234 ABC transporter, periplasmic substrate-binding protein
YP_005701489.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0233 ABC transporter, permease protein
YP_005701490.1	KEGG: dma:DMR_12530 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701491.1	KEGG: dde:Dde_2823 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase
YP_005701492.1	KEGG: dde:Dde_2822 response regulator receiver domain-containing protein; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver
YP_005701493.1	KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005701494.1	KEGG: dde:Dde_2765 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005701495.1	KEGG: dde:Dde_2764 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_005701496.1	KEGG: dde:Dde_2763 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701497.1	KEGG: dde:Dde_2762 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_005701498.1	KEGG: dde:Dde_2717 TPR repeat-containing protein
YP_005701499.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2760 hypothetical protein
YP_005701500.1	KEGG: dde:Dde_2759 hypothetical protein
YP_005701501.1	PFAM: peptidase M29 aminopeptidase II; KEGG: dde:Dde_2758 M29 family peptidase
YP_005701502.1	KEGG: dde:Dde_2755 TPR repeat-containing protein
YP_005701503.1	KEGG: dds:Ddes_2306 putative lipoprotein
YP_005701504.1	PFAM: transcription activator effector binding; KEGG: dde:Dde_2753 hypothetical protein
YP_005701505.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dsa:Desal_0110 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005701506.1	KEGG: dde:Dde_2752 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_005701507.1	KEGG: saz:Sama_0423 putative mitomycin resistance protein
YP_005701508.1	KEGG: dde:Dde_2751 glycerate 2-kinase; PFAM: MOFRL domain protein
YP_005701509.1	PFAM: transport-associated; KEGG: dds:Ddes_1844 transport-associated
YP_005701510.1	PFAM: aminotransferase class V; KEGG: dde:Dde_2744 aminotransferase, class V
YP_005701511.1	TIGRFAM: glutamate racemase; KEGG: dde:Dde_2743 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_005701512.1	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2742 pyridoxamine kinase
YP_005701513.1	PFAM: protein of unknown function DUF81; KEGG: protein of unknown function DUF81
YP_005701514.1	PFAM: TOBE domain-containing protein; integrase family protein; KEGG: dma:DMR_06550 putative molybdenum-pterin binding protein
YP_005701515.1	KEGG: dde:Dde_1143 hypothetical protein
YP_005701516.1	KEGG: dde:Dde_1145 hypothetical protein
YP_005701517.1	KEGG: dde:Dde_0984 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like
YP_005701518.1	TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: dde:Dde_0985 F0F1 ATP synthase subunit beta; SMART: AAA ATPase
YP_005701519.1	KEGG: dde:Dde_0986 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit
YP_005701520.1	KEGG: dde:Dde_0987 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein
YP_005701521.1	KEGG: dde:Dde_0988 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit
YP_005701522.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0989 ATP synthase F0, B subunit
YP_005701523.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0990 ATP synthase F0, B' subunit, putative
YP_005701524.1	PFAM: protein of unknown function DUF583; KEGG: dsa:Desal_3460 protein of unknown function DUF583
YP_005701525.1	KEGG: dde:Dde_0992 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein
YP_005701526.1	TIGRFAM: penicillin-binding protein 2; KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain
YP_005701527.1	KEGG: dds:Ddes_0162 hypothetical protein
YP_005701528.1	KEGG: lip:LI0393 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC
YP_005701529.1	KEGG: dds:Ddes_0164 cell shape determining protein, MreB/Mrl family; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl
YP_005701530.1	TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: dde:Dde_0997 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB
YP_005701531.1	KEGG: dma:DMR_04660 putative methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding
YP_005701532.1	KEGG: dde:Dde_1000 hypothetical protein
YP_005701533.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1006 enoyl-[acyl-carrier-protein] reductase [NADH]
YP_005701534.1	TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dde:Dde_1007 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase
YP_005701535.1	TIGRFAM: histidinol dehydrogenase; KEGG: dde:Dde_1008 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase
YP_005701536.1	KEGG: dde:Dde_1011 hypothetical protein
YP_005701537.1	KEGG: dde:Dde_1010 hypothetical protein
YP_005701538.1	TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; helix-hairpin-helix motif; KEGG: dde:Dde_1014 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1
YP_005701539.1	KEGG: pfl:PFL_3537 sensory box histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005701540.1	KEGG: dde:Dde_1016 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005701541.1	KEGG: dde:Dde_1017 hypothetical protein
YP_005701542.1	KEGG: dde:Dde_1018 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005701543.1	TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dde:Dde_1019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_005701544.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; KEGG: dde:Dde_1020 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase
YP_005701545.1	KEGG: dde:Dde_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit
YP_005701546.1	KEGG: dde:Dde_1022 hypothetical protein
YP_005701547.1	KEGG: dde:Dde_1023 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70
YP_005701548.1	PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE
YP_005701549.1	KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like
YP_005701550.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_1027 bacterioferritin comigratory protein, putative
YP_005701551.1	PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein
YP_005701552.1	KEGG: dde:Dde_1030 cobyric acid synthase; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase
YP_005701553.1	KEGG: hsl:OE4693R hypothetical protein
YP_005701554.1	KEGG: dds:Ddes_2030 spermine synthase
YP_005701555.1	PFAM: NADPH-dependent FMN reductase; KEGG: dba:Dbac_0455 NADPH-dependent FMN reductase
YP_005701556.1	KEGG: dal:Dalk_0240 hypothetical protein
YP_005701557.1	KEGG: drt:Dret_1156 OmpA/MotB domain protein
YP_005701558.1	TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: dde:Dde_1081 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ
YP_005701559.1	KEGG: dds:Ddes_1709 preprotein translocase, SecA subunit; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; SEC-C motif domain protein
YP_005701560.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative
YP_005701561.1	KEGG: dde:Dde_1087 glycolate oxidase, subunit GlcD, putative; PFAM: FAD linked oxidase domain protein
YP_005701562.1	KEGG: dde:Dde_1088 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein
YP_005701563.1	KEGG: dde:Dde_1089 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region
YP_005701564.1	KEGG: dde:Dde_1090 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr
YP_005701565.1	PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dde:Dde_1091 PTS system, IID component, putative
YP_005701566.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_1092 hypothetical protein
YP_005701567.1	PFAM: Uncharacterised protein family UPF0102; KEGG: dds:Ddes_1792 protein of unknown function UPF0102
YP_005701568.1	KEGG: dde:Dde_1094 ribonuclease HII; PFAM: ribonuclease HII/HIII
YP_005701569.1	KEGG: dds:Ddes_1790 ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19
YP_005701570.1	TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase
YP_005701571.1	KEGG: dde:Dde_1097 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein
YP_005701572.1	KEGG: dde:Dde_1098 hypothetical protein
YP_005701573.1	KEGG: dde:Dde_1099 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16
YP_005701574.1	TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dds:Ddes_1804 signal recognition particle protein; SMART: AAA ATPase
YP_005701575.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_1103 aspartate aminotransferase
YP_005701576.1	KEGG: dsa:Desal_0226 hypothetical protein
YP_005701577.1	PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like
YP_005701578.1	TIGRFAM: adenylylsulfate reductase, beta subunit; KEGG: dma:DMR_05390 adenylylsulphate reductase alpha subunit
YP_005701579.1	KEGG: dde:Dde_1110 adenylylsulfate reductase subunit alpha; TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_005701580.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dde:Dde_1111 heterodisulfide reductase, putative
YP_005701581.1	PFAM: methyl-viologen-reducing hydrogenase delta subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit, putative
YP_005701582.1	KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit, putative
YP_005701583.1	KEGG: dde:Dde_1114 hypothetical protein
YP_005701584.1	KEGG: pmy:Pmen_3734 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_005701585.1	PFAM: protein of unknown function UPF0027; KEGG: pmx:PERMA_0847 GP160
YP_005701586.1	KEGG: dde:Dde_2578 AsnC family transcriptional regulator
YP_005701587.1	KEGG: dba:Dbac_2393 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005701588.1	KEGG: dde:Dde_2576 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase
YP_005701589.1	KEGG: dde:Dde_2575 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005701590.1	KEGG: dde:Dde_2573 putative lipoprotein
YP_005701591.1	KEGG: dde:Dde_1115 hypothetical protein
YP_005701592.1	KEGG: dds:Ddes_0595 hypothetical protein
YP_005701593.1	KEGG: dde:Dde_1117 hypothetical protein
YP_005701594.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein
YP_005701595.1	KEGG: dde:Dde_1119 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS
YP_005701596.1	PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2, putative
YP_005701597.1	PFAM: peptidase M22 glycoprotease; KEGG: dds:Ddes_0514 peptidase M22 glycoprotease
YP_005701598.1	TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_1122 peptidase RseP; SMART: PDZ/DHR/GLGF domain protein
YP_005701599.1	TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dde:Dde_1123 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein
YP_005701600.1	PFAM: Pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase, putative
YP_005701601.1	PFAM: phosphatidate cytidylyltransferase; KEGG: dde:Dde_1125 phosphatidate cytidylyltransferase
YP_005701602.1	TIGRFAM: undecaprenyl diphosphate synthase; KEGG: dma:DMR_37900 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_005701603.1	KEGG: dds:Ddes_0519 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor
YP_005701604.1	KEGG: dde:Dde_1129 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase
YP_005701605.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1130 glycosyl transferase, group 2 family protein
YP_005701606.1	KEGG: lip:LI0378 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein
YP_005701607.1	KEGG: dds:Ddes_0346 ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2
YP_005701608.1	KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase
YP_005701609.1	PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1137 metallo-beta-lactamase family protein
YP_005701610.1	KEGG: ppw:PputW619_3452 TraR/DksA family transcriptional regulator
YP_005701611.1	KEGG: mla:Mlab_0696 hypothetical protein
YP_005701612.1	KEGG: dde:Dde_2741 elongation factor G; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein
YP_005701613.1	KEGG: dde:Dde_2740 hypothetical protein
YP_005701614.1	PFAM: glutaredoxin; KEGG: dde:Dde_2739 hypothetical protein
YP_005701615.1	KEGG: dde:Dde_2738 hypothetical protein
YP_005701616.1	KEGG: tgo:TGME49_090660 polypyrimidine track-binding protein, putative
YP_005701617.1	PFAM: amidohydrolase 2; KEGG: dde:Dde_2736 amidohydrolase family protein
YP_005701618.1	KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase; manually curated; PFAM: thioesterase superfamily protein
YP_005701619.1	KEGG: dde:Dde_2733 transglycosylase, putative; manually curated; PFAM: MltA domain protein; 3D domain-containing protein
YP_005701620.1	SMART: response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein; manually curated; KEGG: ppd:Ppro_3010 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; response regulator receiver; PAS fold domain protein; ATP-binding region ATPase domain protein
YP_005701621.1	KEGG: dde:Dde_2732 phosphoglycerate mutase; PFAM: metalloenzyme domain protein
YP_005701622.1	PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: dde:Dde_2731 homoserine dehydrogenase
YP_005701623.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase
YP_005701624.1	KEGG: dde:Dde_2728 shikimate kinase II; PFAM: shikimate kinase
YP_005701625.1	KEGG: dde:Dde_2727 universal stress protein; manually curated; PFAM: UspA domain-containing protein
YP_005701626.1	TIGRFAM: chorismate synthase; KEGG: dde:Dde_2726 chorismate synthase; PFAM: chorismate synthase
YP_005701627.1	TIGRFAM: helicase, RecD/TraA family; KEGG: dde:Dde_2725 helicase RecD/TraA; SMART: AAA ATPase
YP_005701628.1	PFAM: NLP/P60 protein; KEGG: dds:Ddes_1599 NLP/P60 protein
YP_005701629.1	TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_2722 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB
YP_005701630.1	PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; KEGG: dde:Dde_2721 hypothetical protein
YP_005701631.1	PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein
YP_005701632.1	SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: dde:Dde_2719 guanylate kinase; PFAM: guanylate kinase
YP_005701633.1	TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: dde:Dde_2718 orotidine-5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase
YP_005701634.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2717 TPR repeat-containing protein
YP_005701635.1	KEGG: dde:Dde_2716 putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region
YP_005701636.1	KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1
YP_005701637.1	KEGG: dde:Dde_2714 lipoyl synthase; PFAM: Radical SAM domain protein; manually curated; TIGRFAM: lipoic acid synthetase; SMART: Elongator protein 3/MiaB/NifB
YP_005701638.1	TIGRFAM: lipoate-protein ligase B; KEGG: dde:Dde_2713 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase
YP_005701639.1	PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein
YP_005701640.1	KEGG: dde:Dde_2711 iron-sulfur cluster-binding protein, putative
YP_005701641.1	KEGG: dde:Dde_2710 hypothetical protein
YP_005701642.1	KEGG: dde:Dde_2708 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein
YP_005701643.1	TIGRFAM: tRNA pseudouridine synthase A; KEGG: dde:Dde_2707 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain
YP_005701644.1	KEGG: dde:Dde_2706 hypothetical protein
YP_005701645.1	TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 putative flagellar FliJ protein
YP_005701646.1	PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dde:Dde_2704 cobalamin-5'-phosphate synthase
YP_005701647.1	PFAM: protein of unknown function DUF62; KEGG: dsa:Desal_3688 protein of unknown function DUF62
YP_005701648.1	PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; KEGG: dde:Dde_2702 redox-sensing transcriptional repressor REX
YP_005701649.1	KEGG: dde:Dde_2701 ATP synthase F0, C subunit; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit
YP_005701650.1	KEGG: dde:Dde_2700 ATP synthase F0, A subunit; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit
YP_005701651.1	KEGG: dde:Dde_2699 hypothetical protein; manually curated; PFAM: ATP synthase I chain
YP_005701652.1	KEGG: dde:Dde_2698 ATP synthase protein I
YP_005701653.1	KEGG: geo:Geob_0985 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_005701654.1	KEGG: dsa:Desal_0603 cytochrome c family protein
YP_005701655.1	PFAM: Endoribonuclease L-PSP; KEGG: cbl:CLK_1449 endoribonuclease L-PSP family protein
YP_005701656.1	KEGG: dde:Dde_2695 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM
YP_005701657.1	KEGG: dde:Dde_2693 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase
YP_005701658.1	KEGG: dde:Dde_2692 50S ribosomal protein L21P; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21
YP_005701659.1	KEGG: dde:Dde_2691 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27
YP_005701660.1	KEGG: dds:Ddes_2248 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related
YP_005701661.1	TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: dde:Dde_2689 gamma-glutamyl kinase; SMART: PUA domain containing protein
YP_005701662.1	KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_005701663.1	KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_005701664.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; KEGG: cyn:Cyan7425_3275 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: response regulator receiver; PAS domain containing protein
YP_005701665.1	KEGG: olu:OSTLU_40934 predicted protein
YP_005701666.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein
YP_005701667.1	TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_2684 excisionase/Xis, DNA-binding
YP_005701668.1	KEGG: dds:Ddes_0042 hypothetical protein
YP_005701669.1	KEGG: dde:Dde_2682 isoamylase protein-like
YP_005701670.1	KEGG: dde:Dde_2681 hypothetical protein
YP_005701671.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005701672.1	PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: dde:Dde_2677 PreP peptidase
YP_005701673.1	PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein
YP_005701674.1	PFAM: Uncharacterised protein family UPF0324; KEGG: dde:Dde_0876 hypothetical protein
YP_005701675.1	KEGG: dsa:Desal_0415 hypothetical protein
YP_005701676.1	KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005701677.1	KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005701678.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1146 hypothetical protein
YP_005701679.1	KEGG: dma:DMR_05070 hypothetical protein
YP_005701680.1	PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dsa:Desal_2344 hypothetical protein
YP_005701681.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dde:Dde_0230 molybdopterin molybdochelatase; SMART: molybdopterin binding domain
YP_005701682.1	PFAM: metallophosphoesterase; KEGG: dde:Dde_0229 hypothetical protein
YP_005701683.1	SMART: RNA-binding S4 domain protein; TIGRFAM: tyrosyl-tRNA synthetase; KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein
YP_005701684.1	PFAM: Organic solvent tolerance protein; OstA family protein; KEGG: dde:Dde_1413 organic solvent tolerance protein, putative
YP_005701685.1	TIGRFAM: alanine racemase; KEGG: dba:Dbac_0425 alanine racemase; PFAM: alanine racemase domain protein
YP_005701686.1	KEGG: dde:Dde_1412 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like
YP_005701687.1	KEGG: dds:Ddes_2023 ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18
YP_005701688.1	KEGG: dds:Ddes_2022 ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like
YP_005701689.1	manually curated; TIGRFAM: replicative DNA helicase; KEGG: dde:Dde_1409 primary replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein
YP_005701690.1	KEGG: dde:Dde_0225 hypothetical protein
YP_005701691.1	TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: dds:Ddes_0653 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase
YP_005701692.1	PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD)
YP_005701693.1	KEGG: dde:Dde_1384 hypothetical protein
YP_005701694.1	KEGG: dba:Dbac_1818 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor
YP_005701695.1	KEGG: dde:Dde_1386 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005701696.1	KEGG: dde:Dde_1387 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701697.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dde:Dde_1388 amino acid transporter LysE
YP_005701698.1	KEGG: dde:Dde_1389 hypothetical protein
YP_005701699.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dds:Ddes_0652 molybdenum cofactor synthesis domain protein; SMART: molybdopterin binding domain
YP_005701700.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1391 metal dependent phosphohydrolase
YP_005701701.1	KEGG: dde:Dde_1392 4-hydroxybenzoate octaprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase
YP_005701702.1	KEGG: dde:Dde_1393 hypothetical protein
YP_005701703.1	PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein
YP_005701704.1	KEGG: dde:Dde_2384 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005701705.1	KEGG: dde:Dde_2382 hypothetical protein
YP_005701706.1	KEGG: dma:DMR_43860 putative ABC transporter substrate binding protein precursor
YP_005701707.1	TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: dde:Dde_1178 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase
YP_005701708.1	KEGG: dde:Dde_1179 DAK2 domain-containing protein; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase
YP_005701709.1	KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; PEP-utilising protein mobile region
YP_005701710.1	KEGG: dma:DMR_17210 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein
YP_005701711.1	PFAM: protein of unknown function DUF151; KEGG: dde:Dde_2379 hypothetical protein
YP_005701712.1	TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_2378 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB
YP_005701713.1	KEGG: dde:Dde_2377 hypothetical protein
YP_005701714.1	KEGG: dde:Dde_2375 heavy metal-binding domain-containing protein
YP_005701715.1	KEGG: dde:Dde_1489 carbohydrate kinase; PFAM: PfkB domain protein
YP_005701716.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: rru:Rru_A1673 CutA1 divalent ion tolerance protein
YP_005701717.1	SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop
YP_005701718.1	KEGG: dde:Dde_1492 hypothetical protein
YP_005701719.1	KEGG: dde:Dde_1493 response regulator receiver (CheY-like) modulated CheW protein; PFAM: response regulator receiver; CheW domain protein; SMART: response regulator receiver; CheW domain protein
YP_005701720.1	KEGG: dde:Dde_2399 hypothetical protein
YP_005701721.1	KEGG: dds:Ddes_1403 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB
YP_005701722.1	KEGG: dde:Dde_1169 peptidase C56, PfpI; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein
YP_005701723.1	KEGG: dds:Ddes_2009 hypothetical protein
YP_005701724.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dde:Dde_2525 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_005701725.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein
YP_005701726.1	KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like; PFAM: cytochrome c biogenesis protein transmembrane region
YP_005701727.1	PFAM: peptidase M24; KEGG: dde:Dde_1305 M24 family peptidase
YP_005701728.1	SMART: CoA-binding domain protein; KEGG: dde:Dde_1304 coenzyme A binding protein
YP_005701729.1	PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_1303 hypothetical protein
YP_005701730.1	KEGG: dde:Dde_1302 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein
YP_005701731.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2856 hypothetical protein
YP_005701732.1	KEGG: lip:LI0103 hypothetical protein
YP_005701733.1	PFAM: membrane-bound metal-dependent hydrolase; KEGG: dde:Dde_1443 hypothetical protein
YP_005701734.1	KEGG: glo:Glov_3081 adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis protein
YP_005701735.1	KEGG: dba:Dbac_0437 hypothetical protein
YP_005701736.1	KEGG: mbr:MONBRDRAFT_5414 hypothetical protein
YP_005701737.1	TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: pfo:Pfl01_1463 VCBS; SMART: von Willebrand factor type A
YP_005701738.1	KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein
YP_005701739.1	TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dde:Dde_1418 ATPase; SMART: AAA ATPase
YP_005701740.1	KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein
YP_005701741.1	KEGG: dde:Dde_1420 hypothetical protein
YP_005701742.1	TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; SMART: PAS domain containing protein
YP_005701743.1	PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein
YP_005701744.1	KEGG: dde:Dde_1445 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701745.1	PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein
YP_005701746.1	SMART: RNA-binding S4 domain protein; TIGRFAM: pseudouridine synthase, RluA family; dephospho-CoA kinase; KEGG: dde:Dde_1447 pseudouridine synthase, RluD; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; Dephospho-CoA kinase
YP_005701747.1	KEGG: dde:Dde_1448 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_005701748.1	KEGG: dde:Dde_1449 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease
YP_005701749.1	KEGG: dma:DMR_13260 hypothetical membrane protein
YP_005701750.1	TIGRFAM: cytidylate kinase; KEGG: dds:Ddes_0760 cytidylate kinase; PFAM: cytidylate kinase region; shikimate kinase
YP_005701751.1	KEGG: dde:Dde_1453 histidinol phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II
YP_005701752.1	PFAM: UspA domain-containing protein; KEGG: dds:Ddes_0762 UspA domain protein
YP_005701753.1	KEGG: dde:Dde_1455 hypothetical protein
YP_005701754.1	PFAM: CinA domain protein; KEGG: cvi:CV_2370 CinA-related protein
YP_005701755.1	KEGG: dsa:Desal_2044 hypothetical protein
YP_005701756.1	KEGG: dde:Dde_1461 glucokinase; PFAM: Glucokinase
YP_005701757.1	PFAM: SNARE associated Golgi protein; KEGG: amc:MADE_01787 mercuric reductase (Hg(II) reductase)
YP_005701758.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1463 mercuric reductase, putative
YP_005701759.1	TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: dde:Dde_1465 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein
YP_005701760.1	KEGG: dde:Dde_1466 putative lipoprotein
YP_005701761.1	KEGG: dde:Dde_1467 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase
YP_005701762.1	KEGG: dds:Ddes_1808 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase
YP_005701763.1	KEGG: dde:Dde_1469 twin-arginine translocation protein TatB; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106
YP_005701764.1	KEGG: dds:Ddes_1806 GMP synthase, large subunit; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I
YP_005701765.1	SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: dds:Ddes_1805 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein
YP_005701766.1	KEGG: dde:Dde_1473 TPR repeat-containing protein
YP_005701767.1	KEGG: dba:Dbac_2504 hypothetical protein
YP_005701768.1	PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC
YP_005701769.1	PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dde:Dde_1475 cytochrome c-type biogenesis protein CcmB
YP_005701770.1	KEGG: dde:Dde_1476 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701771.1	PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF
YP_005701772.1	KEGG: dde:Dde_1478 cytochrome c-type biogenesis protein CcmE
YP_005701773.1	PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dde:Dde_1479 CBS
YP_005701774.1	TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dde:Dde_1481 HAD family hydrolase
YP_005701775.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1482 heptosyltransferase family protein
YP_005701776.1	KEGG: dde:Dde_1193 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701777.1	KEGG: dsa:Desal_3207 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein
YP_005701778.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dba:Dbac_3138 cobalamin (vitamin B12) biosynthesis CbiM protein
YP_005701779.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_1401 L-threonine O-3-phosphate decarboxylase
YP_005701780.1	PFAM: glycosyl transferase group 1; KEGG: lip:LI0444 glycosyltransferase
YP_005701781.1	PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase
YP_005701782.1	PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dde:Dde_1404 NCAIR mutase (PurE)-related proteins-like
YP_005701783.1	KEGG: dde:Dde_1405 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: AAA ATPase; response regulator receiver
YP_005701784.1	KEGG: dde:Dde_1406 aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain-containing protein
YP_005701785.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein
YP_005701786.1	KEGG: dsa:Desal_2452 xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_005701787.1	PFAM: basic membrane lipoprotein; KEGG: dde:Dde_1507 Bmp family membrane protein
YP_005701788.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_1508 branched-chain amino acid ABC transporter, permease protein
YP_005701789.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_1509 branched chain amino acid ABC transporter, permease protein
YP_005701790.1	KEGG: dde:Dde_1510 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701791.1	KEGG: dde:Dde_2401 hypothetical protein
YP_005701792.1	KEGG: dma:DMR_22260 hypothetical protein
YP_005701793.1	KEGG: dde:Dde_2398 hypothetical protein
YP_005701794.1	KEGG: dds:Ddes_1970 ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34
YP_005701795.1	manually curated; TIGRFAM: ribonuclease P protein component; KEGG: dde:Dde_2396 ribonuclease P protein component; PFAM: ribonuclease P protein
YP_005701796.1	PFAM: protein of unknown function DUF37; KEGG: dds:Ddes_1968 protein of unknown function DUF37
YP_005701797.1	KEGG: dde:Dde_2394 protein translocase subunit YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60 kDa inner membrane insertion protein
YP_005701798.1	KEGG: dde:Dde_2393 single-stranded nucleic acid binding R3H; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein
YP_005701799.1	KEGG: dde:Dde_2392 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related
YP_005701800.1	PFAM: nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like
YP_005701801.1	KEGG: dde:Dde_2389 iron-sulfur cluster-binding protein
YP_005701802.1	KEGG: dde:Dde_2388 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease
YP_005701803.1	KEGG: dde:Dde_2387 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver
YP_005701804.1	TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dde:Dde_2386 phosphate transporter ATP-binding protein; SMART: AAA ATPase
YP_005701805.1	KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein
YP_005701806.1	KEGG: dsa:Desal_3085 hypothetical protein
YP_005701807.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: dds:Ddes_1963 protein of unknown function UPF0052 and CofD
YP_005701808.1	KEGG: dde:Dde_2374 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1
YP_005701809.1	TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: dde:Dde_2373 recombinase A; SMART: AAA ATPase
YP_005701810.1	PFAM: Thiamine biosynthesis protein-like; protein of unknown function DUF814; KEGG: dde:Dde_2372 hypothetical protein
YP_005701811.1	PFAM: sodium:neurotransmitter symporter; KEGG: dde:Dde_2371 sodium-dependent symporter family protein
YP_005701812.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_2471 HAD family hydrolase
YP_005701813.1	KEGG: dde:Dde_2530 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase
YP_005701814.1	TIGRFAM: argininosuccinate synthase; KEGG: dde:Dde_2531 argininosuccinate synthase; PFAM: argininosuccinate synthase
YP_005701815.1	TIGRFAM: ornithine carbamoyltransferase; KEGG: dde:Dde_2532 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain
YP_005701816.1	PFAM: ApbE family lipoprotein; KEGG: dde:Dde_2535 hypothetical protein
YP_005701817.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dma:DMR_29400 hypothetical protein
YP_005701818.1	manually curated; KEGG: bcm:Bcenmc03_0187 hypothetical protein
YP_005701819.1	KEGG: dds:Ddes_0258 hypothetical protein
YP_005701820.1	KEGG: dde:Dde_3393 tail fiber protein, putative
YP_005701821.1	KEGG: dde:Dde_3392 hypothetical protein
YP_005701822.1	KEGG: isc:IscW_ISCW004690 hypothetical protein
YP_005701823.1	PFAM: Baseplate J family protein; KEGG: dde:Dde_3391 baseplate assembly protein, putative
YP_005701824.1	KEGG: gem:GM21_3653 baseplate assembly protein, putative
YP_005701825.1	KEGG: dde:Dde_3389 baseplate assembly protein, putative
YP_005701826.1	KEGG: dde:Dde_3388 hypothetical protein
YP_005701827.1	KEGG: dde:Dde_3387 hypothetical protein
YP_005701828.1	KEGG: rce:RC1_1127 phage tail tape measure protein, TP901 family, core region; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region
YP_005701829.1	KEGG: zro:ZYRO0B03740g hypothetical protein
YP_005701830.1	KEGG: rpi:Rpic_0439 ATPase
YP_005701831.1	KEGG: gem:GM21_3661 hypothetical protein
YP_005701832.1	KEGG: gem:GM21_3662 hypothetical protein
YP_005701833.1	KEGG: gem:GM21_3663 hypothetical protein
YP_005701834.1	KEGG: dde:Dde_3380 hypothetical protein
YP_005701835.1	TIGRFAM: phage virion morphogenesis protein; KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein
YP_005701836.1	PFAM: protein of unknown function DUF1320; KEGG: dde:Dde_3378 hypothetical protein
YP_005701837.1	KEGG: dap:Dacet_2234 hypothetical protein
YP_005701838.1	KEGG: dap:Dacet_2233 hypothetical protein
YP_005701839.1	KEGG: dde:Dde_3375 hypothetical protein
YP_005701840.1	KEGG: dde:Dde_3374 phage putative head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7
YP_005701841.1	PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein
YP_005701842.1	KEGG: hypothetical protein
YP_005701843.1	KEGG: dde:Dde_3372 portal protein, putative
YP_005701844.1	KEGG: dde:Dde_3371 hypothetical protein
YP_005701845.1	KEGG: sma:SAV_3771 hypothetical protein
YP_005701846.1	KEGG: gem:GM21_3675 hypothetical protein
YP_005701847.1	KEGG: spo:SPCC895.05 formin For3
YP_005701848.1	KEGG: met:M446_6666 peptidase C14 caspase catalytic subunit P20
YP_005701849.1	PFAM: Lytic transglycosylase catalytic; KEGG: lip:LIC036 putative lytic murein transglycosylase precursor
YP_005701850.1	KEGG: bbr:BB3639 phage-related membrane protein
YP_005701851.1	KEGG: dde:Dde_3360 DNA-binding protein
YP_005701852.1	KEGG: dde:Dde_3359 hypothetical protein
YP_005701853.1	KEGG: dde:Dde_3358 hypothetical protein
YP_005701854.1	KEGG: dde:Dde_3357 hypothetical protein
YP_005701855.1	KEGG: eli:ELI_12475 integration host factor beta-subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_005701856.1	KEGG: tcu:Tcur_3108 NAD+ synthetase
YP_005701857.1	KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative
YP_005701859.1	KEGG: dma:DMR_14510 hypothetical protein
YP_005701860.1	SMART: AAA ATPase; KEGG: dma:DMR_14500 hypothetical protein
YP_005701861.1	PFAM: Transposase-like Mu ; Integrase catalytic region; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative
YP_005701862.1	KEGG: mmi:MMAR_2197 secreted protein
YP_005701863.1	KEGG: dde:Dde_3348 hypothetical protein
YP_005701864.1	KEGG: dde:Dde_3347 hypothetical protein
YP_005701865.1	PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dds:Ddes_0819 putative phage repressor
YP_005701866.1	PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: dat:HRM2_29880 AlgI2
YP_005701867.1	KEGG: sli:Slin_5462 hypothetical protein
YP_005701868.1	manually curated; KEGG: ypn:YPN_0261 hypothetical protein
YP_005701869.1	PFAM: protein of unknown function DUF1555; KEGG: ppd:Ppro_2434 hypothetical protein
YP_005701870.1	KEGG: two component, sigma54 specific, transcriptional regulator, fis   family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005701871.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; KEGG: rpa:RPA1249 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein
YP_005701872.1	PFAM: Urea transporter; KEGG: har:HEAR1518 putative UreA transporter
YP_005701873.1	KEGG: dat:HRM2_02720 hypothetical protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB
YP_005701875.1	PFAM: major facilitator superfamily MFS_1; KEGG: bpf:BpOF4_00490 hypothetical protein
YP_005701876.1	KEGG: hpa:HPAG1_1180 formamidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_005701877.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0642 NADH dehydrogenase
YP_005701878.1	KEGG: vvi:100255033 hypothetical protein LOC100255033
YP_005701879.1	KEGG: stp:Strop_0250 hypothetical protein
YP_005701880.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold domain protein; KEGG: dsa:Desal_1013 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005701881.1	KEGG: dde:Dde_2470 hypothetical protein
YP_005701882.1	KEGG: dde:Dde_2468 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein
YP_005701883.1	KEGG: dds:Ddes_1272 hypothetical protein
YP_005701884.1	manually curated; KEGG: dde:Dde_2463 hypothetical protein
YP_005701885.1	KEGG: dde:Dde_2462 hypothetical protein
YP_005701886.1	KEGG: dde:Dde_2461 hypothetical protein
YP_005701887.1	PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2460 aldehyde:ferredoxin oxidoreductase, tungsten-containing; SMART: Aldehyde ferredoxin oxidoreductase
YP_005701888.1	PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein
YP_005701889.1	TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2457 metal dependent phosphohydrolase; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region
YP_005701890.1	SMART: PAS domain containing protein; KEGG: dde:Dde_2456 putative PAS/PAC sensor protein
YP_005701891.1	KEGG: dde:Dde_2455 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region
YP_005701892.1	PFAM: Colicin V production protein; KEGG: dde:Dde_2454 colicin V production family protein
YP_005701893.1	KEGG: dde:Dde_2453 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase
YP_005701894.1	KEGG: dde:Dde_2452 hypothetical protein
YP_005701895.1	KEGG: dde:Dde_2449 hypothetical protein
YP_005701896.1	PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein
YP_005701897.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; GAF domain protein; KEGG: dde:Dde_2447 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; GAF domain protein
YP_005701898.1	SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: dde:Dde_2444 Lon-A peptidase; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein
YP_005701899.1	PFAM: acylphosphatase; KEGG: srm:SRM_02285 acylphosphatase
YP_005701900.1	KEGG: dde:Dde_2442 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC
YP_005701901.1	PFAM: DNA polymerase III delta; KEGG: dde:Dde_2441 hypothetical protein
YP_005701902.1	KEGG: lip:LI0151 hypothetical protein
YP_005701903.1	KEGG: dde:Dde_2439 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase
YP_005701904.1	KEGG: dde:Dde_2438 transcription antitermination factor NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44
YP_005701905.1	KEGG: dde:Dde_2437 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase
YP_005701906.1	KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II
YP_005701907.1	TIGRFAM: riboflavin synthase, alpha subunit; KEGG: dde:Dde_2435 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein
YP_005701908.1	KEGG: dde:Dde_2434 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding
YP_005701909.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_2433 cytidine/deoxycytidylate deaminase family protein
YP_005701910.1	KEGG: dde:Dde_2432 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase
YP_005701911.1	KEGG: dde:Dde_2431 3-oxoacyl-[acyl-carrier-protein] synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase
YP_005701912.1	KEGG: dde:Dde_2430 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding
YP_005701913.1	KEGG: dde:Dde_2429 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR
YP_005701914.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: dde:Dde_2428 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_005701915.1	KEGG: dde:Dde_2427 putative glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein
YP_005701916.1	KEGG: dds:Ddes_1611 ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein
YP_005701917.1	PFAM: protein of unknown function DUF177; KEGG: dde:Dde_2426 hypothetical protein
YP_005701918.1	KEGG: dde:Dde_2425 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28
YP_005701919.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: dde:Dde_2422 FxsA protein
YP_005701920.1	PFAM: Rhomboid family protein; KEGG: dde:Dde_2421 rhomboid family protein
YP_005701921.1	PFAM: glycosyl transferase family 39; KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein
YP_005701922.1	KEGG: dde:Dde_2419 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related
YP_005701923.1	KEGG: dde:Dde_2418 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE
YP_005701924.1	PFAM: protein of unknown function DUF77; KEGG: drt:Dret_0429 protein of unknown function DUF77
YP_005701925.1	KEGG: dde:Dde_2414 hypothetical protein
YP_005701926.1	PFAM: nitroreductase; KEGG: dde:Dde_2413 nitroreductase family protein
YP_005701927.1	KEGG: dde:Dde_2410 hypothetical protein
YP_005701928.1	PFAM: protein of unknown function DUF181; KEGG: dde:Dde_2408 hypothetical protein
YP_005701929.1	SMART: AP endonuclease family 2; TIGRFAM: apurinic endonuclease Apn1; KEGG: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain-containing protein TIM barrel
YP_005701930.1	KEGG: dde:Dde_2314 hypothetical protein
YP_005701931.1	PFAM: Redoxin domain protein; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin)
YP_005701932.1	KEGG: dde:Dde_2311 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter
YP_005701933.1	PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_005701934.1	PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; KEGG: dde:Dde_2309 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_005701935.1	PFAM: protein of unknown function DUF81; KEGG: dsa:Desal_0709 protein of unknown function DUF81
YP_005701936.1	KEGG: pno:SNOG_08802 hypothetical protein
YP_005701937.1	KEGG: dde:Dde_2308 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701938.1	KEGG: dde:Dde_2307 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005701939.1	KEGG: dde:Dde_2306 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor
YP_005701940.1	PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein
YP_005701941.1	KEGG: dde:Dde_2304 hypothetical protein
YP_005701942.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: dps:DP0971 hypothetical protein
YP_005701943.1	PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like
YP_005701944.1	PFAM: toluene tolerance family protein; KEGG: dds:Ddes_0533 toluene tolerance family protein
YP_005701945.1	PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein
YP_005701946.1	KEGG: dde:Dde_2298 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005701947.1	PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein
YP_005701948.1	PFAM: Sporulation domain-containing protein; KEGG: dsa:Desal_3691 sporulation domain protein
YP_005701949.1	TIGRFAM: arginyl-tRNA synthetase; KEGG: dde:Dde_2295 arginyl-tRNA synthetase
YP_005701950.1	KEGG: dde:Dde_2294 [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase
YP_005701951.1	PFAM: glucose inhibited division protein; KEGG: dsa:Desal_3719 methyltransferase GidB
YP_005701952.1	KEGG: dde:Dde_2292 hypothetical protein
YP_005701953.1	PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: dds:Ddes_0746 oligosaccharyl transferase STT3 subunit
YP_005701954.1	PFAM: protein of unknown function DUF163; KEGG: dde:Dde_2291 hypothetical protein
YP_005701955.1	KEGG: dde:Dde_2289 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain
YP_005701956.1	PFAM: glycosyl transferase family 9; KEGG: drt:Dret_0811 glycosyl transferase family 9
YP_005701957.1	KEGG: dds:Ddes_2020 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein
YP_005701958.1	PFAM: glutamine synthetase catalytic region; KEGG: dma:DMR_10730 glutamine synthetase type III
YP_005701959.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation
YP_005701960.1	PFAM: tail X family protein; KEGG: drt:Dret_1995 peptidoglycan-binding lysin domain protein
YP_005701961.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dma:DMR_06690 twitching mobility protein; SMART: AAA ATPase
YP_005701962.1	KEGG: drt:Dret_2409 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV
YP_005701963.1	PFAM: Lytic transglycosylase catalytic; KEGG: drt:Dret_1919 lytic transglycosylase catalytic
YP_005701964.1	KEGG: mgr:MGG_12677 hypothetical protein
YP_005701965.1	KEGG: dal:Dalk_4828 hypothetical protein
YP_005701966.1	KEGG: dal:Dalk_4827 hypothetical protein
YP_005701967.1	KEGG: dal:Dalk_4826 hypothetical protein
YP_005701968.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dma:DMR_29520 putative twitching mobility protein; SMART: AAA ATPase
YP_005701969.1	KEGG: dal:Dalk_4820 hypothetical protein
YP_005701970.1	PFAM: Type II secretion system F domain; KEGG: drt:Dret_1997 type II secretion system F domain protein
YP_005701971.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: drt:Dret_1996 type II secretion system protein E
YP_005701972.1	PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dal:Dalk_4815 type II and III secretion system protein
YP_005701973.1	KEGG: dma:DMR_06730 hypothetical protein
YP_005701974.1	KEGG: drt:Dret_1992 hypothetical protein
YP_005701975.1	KEGG: dma:DMR_06710 hypothetical protein
YP_005701976.1	SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: dde:Dde_1513 FtsH peptidase; PFAM: peptidase M41; AAA ATPase central domain protein
YP_005701977.1	TIGRFAM: dihydropteroate synthase; KEGG: dde:Dde_1514 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_005701978.1	PFAM: protein of unknown function DUF147; KEGG: dde:Dde_1515 hypothetical protein
YP_005701979.1	PFAM: YbbR family protein; KEGG: dde:Dde_1516 hypothetical protein
YP_005701980.1	KEGG: dde:Dde_1517 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase
YP_005701981.1	KEGG: dde:Dde_1518 UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase
YP_005701982.1	TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: dde:Dde_1519 replication restart DNA helicase PriA; SMART: helicase domain protein; DEAD-like helicase
YP_005701983.1	KEGG: dde:Dde_1521 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005701984.1	PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit, putative
YP_005701985.1	KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit, putative
YP_005701986.1	KEGG: dde:Dde_2273 cytochrome c family protein
YP_005701987.1	KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit, putative
YP_005701988.1	PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative
YP_005701989.1	KEGG: dde:Dde_2270 hypothetical protein
YP_005701990.1	KEGG: dds:Ddes_0453 hypothetical protein
YP_005701991.1	PFAM: protein of unknown function DUF45; KEGG: dba:Dbac_0875 protein of unknown function DUF45
YP_005701992.1	TIGRFAM: sulfate adenylyltransferase; KEGG: dde:Dde_2265 sulfate adenylyltransferase; PFAM: ATP-sulfurylase
YP_005701993.1	KEGG: dde:Dde_2263 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23
YP_005701994.1	KEGG: lip:LI0943 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7
YP_005701995.1	TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; KEGG: dds:Ddes_2069 translation elongation factor G; SMART: elongation factor G domain IV; elongation factor G domain-containing protein
YP_005701996.1	KEGG: dde:Dde_2258 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10
YP_005701997.1	KEGG: dde:Dde_2257 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3
YP_005701998.1	PFAM: ribosomal protein L4/L1e; KEGG: dde:Dde_2256 50S ribosomal protein L4
YP_005701999.1	PFAM: Ribosomal protein L25/L23; KEGG: dde:Dde_2255 50S ribosomal protein L23
YP_005702000.1	KEGG: dde:Dde_2254 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2
YP_005702001.1	KEGG: dds:Ddes_0664 ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15
YP_005702002.1	KEGG: dds:Ddes_0665 ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17
YP_005702003.1	TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: dde:Dde_2251 30S ribosomal protein S3; SMART: KH domain protein
YP_005702004.1	KEGG: dds:Ddes_0667 ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16
YP_005702005.1	KEGG: dde:Dde_2249 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29
YP_005702006.1	KEGG: dds:Ddes_0669 ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17
YP_005702007.1	KEGG: lip:LI0969 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e
YP_005702008.1	TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dde:Dde_2246 50S ribosomal protein L24; SMART: KOW domain protein
YP_005702009.1	KEGG: dds:Ddes_0672 ribosomal protein L5
YP_005702010.1	PFAM: ribosomal protein S14; KEGG: dde:Dde_2244 30S ribosomal protein S14
YP_005702011.1	PFAM: ribosomal protein S8; KEGG: dds:Ddes_0674 ribosomal protein S8
YP_005702012.1	KEGG: dde:Dde_2242 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain
YP_005702013.1	KEGG: dds:Ddes_0676 ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E
YP_005702014.1	KEGG: dde:Dde_2240 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein
YP_005702015.1	KEGG: dsa:Desal_1203 ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30
YP_005702016.1	TIGRFAM: ribosomal protein L15; KEGG: dde:Dde_2238 50S ribosomal protein L15
YP_005702017.1	manually curated; TIGRFAM: preprotein translocase, SecY subunit; KEGG: dde:Dde_2237 preprotein translocase subunit SecY; PFAM: SecY protein
YP_005702018.1	manually curated; TIGRFAM: methionine aminopeptidase, type I; KEGG: dde:Dde_2236 methionine aminopeptidase, type I; PFAM: peptidase M24
YP_005702019.1	KEGG: dds:Ddes_0682 ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36
YP_005702020.1	KEGG: dde:Dde_2234 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13
YP_005702021.1	KEGG: dde:Dde_2233 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11
YP_005702022.1	TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: dds:Ddes_0685 ribosomal protein S4; SMART: RNA-binding S4 domain protein
YP_005702023.1	TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: dde:Dde_2231 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type
YP_005702024.1	KEGG: dde:Dde_2230 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17
YP_005702025.1	KEGG: dde:Dde_2226 LysR family transcriptional regulator; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR
YP_005702026.1	manually curated; KEGG: dsa:Desal_0640 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; Contains selenocysteine
YP_005702027.1	KEGG: dde:Dde_2222 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type
YP_005702028.1	TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: dde:Dde_2220 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP
YP_005702029.1	TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: dde:Dde_2219 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase
YP_005702030.1	SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: dde:Dde_2218 Lon-A peptidase; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein
YP_005702031.1	KEGG: dds:Ddes_0947 hypothetical protein
YP_005702032.1	KEGG: dds:Ddes_0948 hypothetical protein
YP_005702033.1	KEGG: lip:LI0208 hypothetical protein
YP_005702034.1	PFAM: ferric-uptake regulator; KEGG: dma:DMR_26810 Fur family transcriptional regulator
YP_005702035.1	PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein
YP_005702036.1	KEGG: dde:Dde_2209 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005702037.1	PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein
YP_005702038.1	KEGG: dde:Dde_2207 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein
YP_005702039.1	KEGG: dde:Dde_2206 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein
YP_005702040.1	KEGG: dde:Dde_2204 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type
YP_005702041.1	PFAM: Peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase
YP_005702042.1	PFAM: Exonuclease VII small subunit; KEGG: dde:Dde_2202 exodeoxyribonuclease VII small subunit
YP_005702043.1	KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase
YP_005702044.1	KEGG: dde:Dde_2200 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein
YP_005702045.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins
YP_005702046.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase, putative
YP_005702047.1	SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dde:Dde_2196 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type
YP_005702049.1	KEGG: dde:Dde_2194 hypothetical protein
YP_005702050.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dds:Ddes_1232 metal dependent phosphohydrolase
YP_005702051.1	PFAM: Methyltransferase type 11; KEGG: dde:Dde_2191 hypothetical protein
YP_005702052.1	KEGG: sfu:Sfum_3208 hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_005702053.1	KEGG: dds:Ddes_1127 hypothetical protein
YP_005702054.1	KEGG: dde:Dde_2187 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_005702055.1	TIGRFAM: lipid-A-disaccharide synthase; KEGG: dde:Dde_2185 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19
YP_005702056.1	KEGG: dde:Dde_2184 hypothetical protein
YP_005702057.1	TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2183 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase
YP_005702058.1	KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_005702059.1	KEGG: dde:Dde_2181 heme-binding protein, putative; PFAM: anaerobic cobalt chelatase
YP_005702060.1	KEGG: dde:Dde_2178 putative lipoprotein
YP_005702061.1	manually curated; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; KEGG: dds:Ddes_1121 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106
YP_005702062.1	KEGG: dde:Dde_2176 rhodanese-like protein; PFAM: Rhodanese domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: Rhodanese domain protein
YP_005702063.1	KEGG: dde:Dde_2175 hypothetical protein
YP_005702064.1	KEGG: dde:Dde_2174 hypothetical protein
YP_005702065.1	KEGG: dde:Dde_2173 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_005702066.1	PFAM: protein of unknown function YGGT; KEGG: drt:Dret_1665 protein of unknown function YGGT
YP_005702067.1	KEGG: dde:Dde_2171 cell-division initiation protein DivIVA; TIGRFAM: DivIVA domain; PFAM: DivIVA family protein
YP_005702068.1	PFAM: protein of unknown function DUF167; KEGG: drt:Dret_1664 protein of unknown function DUF167
YP_005702069.1	KEGG: dds:Ddes_1902 hypothetical protein
YP_005702070.1	KEGG: dde:Dde_2168 acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein
YP_005702071.1	KEGG: dde:Dde_2167 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein
YP_005702072.1	TIGRFAM: ketol-acid reductoisomerase; KEGG: dde:Dde_2166 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase
YP_005702073.1	KEGG: dde:Dde_2165 hypothetical protein
YP_005702074.1	KEGG: dde:Dde_2018 HesB-like domain-containing protein; manually curated; PFAM: HesB/YadR/YfhF-family protein; Contains selenocysteine
YP_005702075.1	KEGG: dde:Dde_2018 HesB-like domain-containing protein
YP_005702076.1	PFAM: phosphoribosyltransferase; KEGG: dds:Ddes_0906 uracil phosphoribosyltransferase
YP_005702077.1	KEGG: dds:Ddes_1045 hypothetical protein
YP_005702078.1	PFAM: Protein of unknown function DUF2172, aminopeptidase-like; KEGG: gsu:GSU1966 hypothetical protein
YP_005702079.1	PFAM: extracellular solute-binding protein family 3; KEGG: dsa:Desal_0670 extracellular solute-binding protein family 3
YP_005702080.1	KEGG: dds:Ddes_1132 hypothetical protein
YP_005702081.1	KEGG: aga:AgaP_AGAP010539 AGAP010539-PA
YP_005702082.1	KEGG: dma:DMR_39120 hypothetical protein
YP_005702083.1	PFAM: NLP/P60 protein; KEGG: dma:DMR_17960 NlpC/P60 family protein
YP_005702084.1	TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator
YP_005702085.1	PFAM: Ferritin Dps family protein; KEGG: dba:Dbac_0293 ferritin Dps family protein
YP_005702086.1	KEGG: dma:DMR_01390 methyl-accepting chemotaxis protein
YP_005702087.1	PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit
YP_005702088.1	KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein
YP_005702089.1	PFAM: Protein of unkown function DUF1819 putative inner membrane; KEGG: cpb:Cphamn1_1682 hypothetical protein
YP_005702090.1	PFAM: Domain of unknown function DUF1788; KEGG: cpb:Cphamn1_1681 hypothetical protein
YP_005702091.1	KEGG: cpb:Cphamn1_1680 hypothetical protein
YP_005702092.1	KEGG: cpb:Cphamn1_1679 hypothetical protein
YP_005702093.1	KEGG: cpb:Cphamn1_1678 hypothetical protein
YP_005702094.1	KEGG: cpb:Cphamn1_1677 hypothetical protein
YP_005702095.1	KEGG: cpb:Cphamn1_2551 hypothetical protein
YP_005702096.1	PFAM: PglZ domain protein; KEGG: cpb:Cphamn1_1676 PglZ domain protein
YP_005702097.1	KEGG: cpb:Cphamn1_1675 hypothetical protein
YP_005702098.1	KEGG: ctt:CtCNB1_2429 hypothetical protein
YP_005702099.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: acr:Acry_3487 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_005702100.1	PFAM: flavodoxin/nitric oxide synthase; KEGG: dba:Dbac_1920 beta-lactamase domain protein
YP_005702101.1	KEGG: dba:Dbac_1919 hybrid cluster protein; TIGRFAM: hybrid cluster protein; PFAM: Prismane
YP_005702102.1	KEGG: sfu:Sfum_2932 cytochrome b subunit of nitric oxide reductase
YP_005702103.1	PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_2193 transposase IS3/IS911 family protein
YP_005702104.1	KEGG: dba:Dbac_2192 integrase catalytic region; manually curated; PFAM: Integrase catalytic region
YP_005702105.1	KEGG: dde:Dde_3439 hypothetical protein
YP_005702106.1	KEGG: dol:Dole_2932 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein)
YP_005702107.1	KEGG: dde:Dde_3728 hypothetical protein
YP_005702108.1	PFAM: Integrase catalytic region; KEGG: glo:Glov_1005 integrase catalytic region
YP_005702109.1	PFAM: integrase family protein; KEGG: dde:Dde_3398 phage integrase family site specific recombinase
YP_005702110.1	KEGG: bta:539967 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
YP_005702111.1	PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb3535 sulfate permease and related transporters
YP_005702112.1	KEGG: swo:Swol_1997 putative anti-sigma regulatory factor, serine/threonine protein kinase
YP_005702113.1	PFAM: small multidrug resistance protein; KEGG: pph:Ppha_1102 small multidrug resistance protein
YP_005702114.1	KEGG: glo:Glov_0751 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS
YP_005702115.1	KEGG: swo:Swol_1793 serine phosphatase RsbU regulator of sigma subunit-like protein
YP_005702116.1	KEGG: dba:Dbac_3243 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase
YP_005702117.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: maq:Maqu_1388 hexapaptide repeat-containing transferase
YP_005702118.1	KEGG: sat:SYN_00464 putative cytoplasmic protein
YP_005702119.1	KEGG: dds:Ddes_0600 hypothetical protein
YP_005702120.1	PFAM: protein of unknown function DUF554; KEGG: dde:Dde_2488 hypothetical protein
YP_005702121.1	KEGG: dde:Dde_2486 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related
YP_005702122.1	KEGG: tau:Tola_1997 hypothetical protein
YP_005702123.1	KEGG: dde:Dde_2484 hypothetical protein
YP_005702124.1	TIGRFAM: peptide methionine sulfoxide reductase; KEGG: csa:Csal_1295 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A
YP_005702125.1	PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_2481 hypothetical protein
YP_005702126.1	KEGG: gme:Gmet_2573 ATP-dependent RNA helicase RhlE; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_005702127.1	PFAM: protein of unknown function DUF520; KEGG: dde:Dde_2479 putative nucleotide-binding protein
YP_005702128.1	KEGG: dde:Dde_2478 hypothetical protein
YP_005702129.1	KEGG: dde:Dde_2477 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005702130.1	PFAM: Na+/H+ antiporter NhaC-like; KEGG: dsa:Desal_2013 Na+/H+ antiporter NhaC
YP_005702131.1	PFAM: Chaperonin Cpn10; KEGG: dde:Dde_2474 co-chaperonin GroES
YP_005702132.1	KEGG: lip:LI0625 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1
YP_005702133.1	KEGG: dma:DMR_46100 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_005702134.1	KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase; TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005702135.1	KEGG: dde:Dde_2561 rhodanese-like protein; PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein
YP_005702136.1	KEGG: dde:Dde_0220 Sel1 repeat-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein
YP_005702137.1	KEGG: mho:MHO_0860 acyl carrier protein phosphodiesterase
YP_005702138.1	manually curated; PFAM: response regulator receiver; KEGG: dde:Dde_0221 response regulator receiver domain-containing protein; SMART: response regulator receiver
YP_005702139.1	PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein
YP_005702140.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative
YP_005702141.1	KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074
YP_005702142.1	KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074
YP_005702143.1	KEGG: sco:SCO5011 integral membrane protein
YP_005702144.1	KEGG: dde:Dde_1627 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005702145.1	KEGG: dma:DMR_19080 chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein
YP_005702146.1	KEGG: dma:DMR_19060 chemotaxis protein CheA; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein
YP_005702147.1	TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein
YP_005702148.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005702149.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1629 heptosyltransferase family protein
YP_005702150.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_1630 TPR repeat-containing protein
YP_005702151.1	TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dds:Ddes_0440 cytidyltransferase-related domain protein; PFAM: cytidylyltransferase
YP_005702152.1	KEGG: dde:Dde_1633 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase
YP_005702153.1	KEGG: dde:Dde_1634 hypothetical protein
YP_005702154.1	TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; KEGG: dds:Ddes_0443 indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein
YP_005702155.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dds:Ddes_0444 indolepyruvate ferredoxin oxidoreductase
YP_005702156.1	KEGG: dde:Dde_1635 Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; GAF domain protein
YP_005702157.1	KEGG: dde:Dde_1636 hypothetical protein
YP_005702158.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_1637 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit
YP_005702159.1	PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dde:Dde_1638 2-oxoglutarate ferredoxin oxidoreductase subunit beta
YP_005702160.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1639 2-oxoglutarate ferredoxin oxidoreductase subunit alpha
YP_005702161.1	KEGG: drt:Dret_1403 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_005702162.1	KEGG: dde:Dde_1642 hypothetical protein
YP_005702163.1	KEGG: dde:Dde_1644 DegV family protein; TIGRFAM: degV family protein; PFAM: Dak phosphatase; DegV family protein
YP_005702164.1	KEGG: dde:Dde_3732 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_005702165.1	TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; KEGG: dba:Dbac_1438 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_005702166.1	TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; KEGG: drt:Dret_2101 glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_005702167.1	KEGG: dde:Dde_3730 phosphonate-binding periplasmic protein; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3
YP_005702168.1	TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dba:Dbac_0857 phosphonate ABC transporter, ATPase subunit; SMART: AAA ATPase
YP_005702169.1	KEGG: dde:Dde_3725 phosphonate ABC transporter inner membrane protein; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005702170.1	KEGG: dde:Dde_3724 phosphonate ABC transporter permease; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005702171.1	KEGG: dba:Dbac_0225 intracellular protease, PfpI family; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein
YP_005702172.1	PFAM: adenylate kinase; KEGG: dde:Dde_2028 adenylate kinase
YP_005702173.1	PFAM: NIL domain; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein
YP_005702174.1	TIGRFAM: tol-pal system protein YbgF; KEGG: lip:LI1053 hypothetical protein
YP_005702175.1	KEGG: dba:Dbac_0485 hypothetical protein
YP_005702176.1	TIGRFAM: lipoprotein signal peptidase; KEGG: dds:Ddes_0386 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II
YP_005702177.1	KEGG: dde:Dde_2142 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase
YP_005702178.1	KEGG: rxy:Rxyl_1674 hypothetical protein; manually curated; PFAM: AIG2 family protein
YP_005702179.1	PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase
YP_005702180.1	KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC)
YP_005702181.1	KEGG: dde:Dde_2139 hydrogenase expression/formation protein; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein
YP_005702182.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1
YP_005702183.1	TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_005702184.1	KEGG: dde:Dde_2136 peptidase M52, hydrogen uptake protein; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein
YP_005702185.1	KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing; manually curated; PFAM: nickel-dependent hydrogenase large subunit; Contains selenocysteine
YP_005702186.1	TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_2134 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_005702187.1	KEGG: dde:Dde_2049 putative alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein
YP_005702188.1	KEGG: dde:Dde_2048 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein
YP_005702189.1	PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: dde:Dde_2047 hypothetical protein
YP_005702190.1	KEGG: dde:Dde_2046 CBS; PFAM: CBS domain containing protein; SMART: CBS domain containing protein
YP_005702191.1	KEGG: dde:Dde_2045 hypothetical protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain-containing protein; protein of unknown function UPF0031
YP_005702192.1	KEGG: dsa:Desal_1993 holo-acyl-carrier-protein synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase
YP_005702193.1	TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: dde:Dde_2043 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ
YP_005702194.1	TIGRFAM: nucleotide sugar dehydrogenase; KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase
YP_005702195.1	KEGG: dde:Dde_2041 hypothetical protein
YP_005702196.1	KEGG: dde:Dde_2040 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein
YP_005702197.1	TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: dde:Dde_2039 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein
YP_005702198.1	PFAM: SurA domain; KEGG: dde:Dde_2038 hypothetical protein
YP_005702199.1	PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dds:Ddes_0912 SurA domain protein
YP_005702200.1	KEGG: dds:Ddes_0913 hypothetical protein
YP_005702201.1	KEGG: dde:Dde_2035 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO
YP_005702202.1	TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: dde:Dde_2034 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit
YP_005702203.1	TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: dde:Dde_2033 glycyl-tRNA synthetase, beta subunit
YP_005702204.1	KEGG: dde:Dde_2031 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20
YP_005702205.1	PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein
YP_005702206.1	KEGG: ame:408754 similar to TNF-receptor-associated factor 1 CG3048-PA, isoform A
YP_005702207.1	KEGG: dde:Dde_2626 ATP-dependent protease, putative
YP_005702208.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein
YP_005702209.1	PFAM: Protein of unknown function DUF2064; KEGG: dde:Dde_2624 hypothetical protein
YP_005702210.1	KEGG: dde:Dde_2621 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase
YP_005702211.1	TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dds:Ddes_1286 regulatory protein, FmdB family; SMART: Putative regulatory protein FmdB
YP_005702212.1	KEGG: dde:Dde_2619 phosphoheptose isomerase
YP_005702213.1	PFAM: ATP-NAD/AcoX kinase; KEGG: dde:Dde_2618 NAD(+) kinase
YP_005702214.1	KEGG: dde:Dde_2617 hypothetical protein
YP_005702215.1	KEGG: dde:Dde_2616 hypothetical protein
YP_005702216.1	KEGG: dde:Dde_2615 aspartyl/glutamyl-tRNA amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase
YP_005702217.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: dde:Dde_1650 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005702218.1	PFAM: protein of unknown function UPF0054; KEGG: dsa:Desal_1783 protein of unknown function UPF0054
YP_005702219.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; KEGG: dde:Dde_1652 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_005702220.1	PFAM: PhoH family protein; KEGG: dde:Dde_1653 PhoH family protein
YP_005702221.1	KEGG: dde:Dde_1654 hypothetical protein
YP_005702222.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein
YP_005702223.1	KEGG: aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_005702224.1	PFAM: polysaccharide deacetylase; KEGG: dde:Dde_1658 polysaccharide deacetylase family protein
YP_005702225.1	KEGG: dde:Dde_1659 heat shock protein DnaJ-like; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein
YP_005702226.1	KEGG: dde:Dde_1660 DafA protein
YP_005702227.1	TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: dde:Dde_1661 ATPase; SMART: AAA ATPase
YP_005702228.1	KEGG: bav:BAV2564 peptidyl-prolyl cis-trans isomerase B; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_005702229.1	KEGG: dde:Dde_1663 aspartate ammonia-lyase; TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like
YP_005702231.1	PFAM: cyclase family protein; KEGG: dde:Dde_1664 cyclase, putative
YP_005702232.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005702233.1	KEGG: dde:Dde_1797 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase
YP_005702234.1	KEGG: dde:Dde_1798 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase
YP_005702235.1	KEGG: dma:DMR_26140 hypothetical protein
YP_005702236.1	KEGG: dma:DMR_26140 hypothetical protein
YP_005702237.1	KEGG: dde:Dde_1799 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_005702238.1	KEGG: dde:Dde_1800 flagellar synthesis regulator FleN, putative
YP_005702239.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dsa:Desal_1592 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005702240.1	manually curated; manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein
YP_005702241.1	KEGG: dma:DMR_26090 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_005702242.1	manually curated; PFAM: Excalibur domain protein; Cold-shock protein DNA-binding; KEGG: eba:ebA2865 cold shock family protein; SMART: Cold shock protein
YP_005702243.1	KEGG: dsa:Desal_2891 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005702244.1	KEGG: dde:Dde_1940 hypothetical protein
YP_005702245.1	KEGG: cfa:489443 smoothelin-like 2
YP_005702246.1	KEGG: sbp:Sbal223_0115 protein of unknown function DUF1311
YP_005702247.1	PFAM: Peptidase M23; KEGG: dde:Dde_2079 M24/M37 family peptidase
YP_005702248.1	KEGG: dde:Dde_2078 CBS; PFAM: CBS domain containing protein; SMART: CBS domain containing protein
YP_005702249.1	TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: dde:Dde_2077 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_005702250.1	KEGG: dde:Dde_2076 hypothetical protein
YP_005702251.1	PFAM: ATPase-like, ParA/MinD; KEGG: dde:Dde_2075 hypothetical protein
YP_005702252.1	KEGG: dde:Dde_2074 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_005702253.1	KEGG: dde:Dde_2073 hypothetical protein
YP_005702254.1	PFAM: Septum formation initiator; KEGG: dde:Dde_2072 cell division protein FtsB
YP_005702255.1	KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein
YP_005702256.1	KEGG: dds:Ddes_1196 hypothetical protein
YP_005702257.1	PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: dde:Dde_2069 fructose-1,6-bisphosphatase
YP_005702258.1	TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: dde:Dde_2068 O-sialoglycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease
YP_005702259.1	KEGG: dde:Dde_2067 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein
YP_005702260.1	KEGG: dde:Dde_2066 thioredoxin reductase (NADPH); TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005702261.1	TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dde:Dde_2065 putative lipoprotein
YP_005702262.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: dds:Ddes_1555 polynucleotide adenylyltransferase region
YP_005702263.1	KEGG: dde:Dde_2082 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase
YP_005702264.1	KEGG: dde:Dde_2081 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; pyruvate carboxyltransferase; Conserved carboxylase region; biotin carboxylase domain protein; Carbamoyl-phosphate synthetase large chain domain protein; biotin/lipoyl attachment domain-containing protein; SMART: biotin carboxylase domain protein
YP_005702265.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase
YP_005702266.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: lip:LI0941 Mg2+/Co2+ transporter
YP_005702267.1	KEGG: dde:Dde_1808 hypothetical protein
YP_005702268.1	KEGG: dde:Dde_1809 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A
YP_005702269.1	KEGG: dde:Dde_1810 diaminopimelate aminotransferase; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_005702270.1	KEGG: dds:Ddes_1932 hypothetical protein
YP_005702271.1	KEGG: dde:Dde_1812 atrazine chlorohydrolase; PFAM: amidohydrolase
YP_005702272.1	KEGG: drt:Dret_1708 putative carboxylesterase
YP_005702273.1	KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit; PFAM: ferredoxin-dependent glutamate synthase
YP_005702274.1	PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit
YP_005702275.1	PFAM: glutamate synthase alpha subunit domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit
YP_005702276.1	KEGG: dde:Dde_1817 protein translocase subunit YajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein
YP_005702277.1	KEGG: dde:Dde_1818 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein
YP_005702278.1	KEGG: dde:Dde_1819 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein
YP_005702279.1	PFAM: cytochrome c class I; KEGG: dde:Dde_1821 cytochrome c-553
YP_005702280.1	KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC
YP_005702281.1	KEGG: dde:Dde_1823 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I
YP_005702282.1	PFAM: cytochrome c oxidase subunit III; KEGG: dba:Dbac_1540 cytochrome c oxidase subunit III
YP_005702283.1	TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase, subunit IV
YP_005702284.1	KEGG: dde:Dde_1826 cytochrome c oxidase, subunit II, putative; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II
YP_005702285.1	PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1827 protoheme IX farnesyltransferase, putative
YP_005702286.1	KEGG: dde:Dde_1828 hypothetical protein
YP_005702287.1	KEGG: dde:Dde_1829 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_005702288.1	TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: dde:Dde_1830 quinolinate synthetase; PFAM: Quinolinate synthetase A
YP_005702289.1	TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: dde:Dde_1831 nicotinate-nucleotide pyrophosphorylase [carboxylating]; PFAM: Quinolinate phosphoribosyl transferase
YP_005702290.1	KEGG: dde:Dde_1832 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region
YP_005702291.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005702292.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein
YP_005702293.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1836 glycosyl transferase, group 1 family protein
YP_005702294.1	PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like
YP_005702295.1	KEGG: dde:Dde_1838 hypothetical protein
YP_005702296.1	KEGG: dde:Dde_2064 hypothetical protein
YP_005702297.1	KEGG: dde:Dde_2063 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein
YP_005702298.1	PFAM: Protein of unknown function DUF2062; KEGG: dde:Dde_2062 hypothetical protein
YP_005702299.1	TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dde:Dde_2059 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase-like
YP_005702300.1	KEGG: dde:Dde_2058 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_005702301.1	KEGG: dde:Dde_2057 hypothetical protein
YP_005702302.1	KEGG: dds:Ddes_1089 ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21
YP_005702303.1	KEGG: dde:Dde_2055 GatB/YqeY family protein
YP_005702304.1	KEGG: dde:Dde_2054 DNA mismatch repair protein MutS-like; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2
YP_005702305.1	TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; KEGG: dde:Dde_2053 DNA primase; SMART: Toprim sub domain-containing protein
YP_005702306.1	KEGG: dde:Dde_2052 sigma-70 factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein
YP_005702307.1	KEGG: dma:DMR_22330 hypothetical protein; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein)
YP_005702308.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2050 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005702309.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins
YP_005702310.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1841 short chain dehydrogenase/reductase family oxidoreductase
YP_005702311.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1842 hypothetical protein
YP_005702312.1	KEGG: dde:Dde_1843 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162
YP_005702313.1	PFAM: protein of unknown function DUF162; KEGG: azl:AZL_e03870 hypothetical protein
YP_005702314.1	KEGG: geo:Geob_3738 protein of unknown function DUF1653; manually curated; PFAM: protein of unknown function DUF1653
YP_005702315.1	KEGG: dds:Ddes_1202 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein
YP_005702316.1	KEGG: dma:DMR_00600 putative carbonic anhydrase; PFAM: carbonic anhydrase
YP_005702317.1	KEGG: dal:Dalk_3412 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase
YP_005702318.1	KEGG: dma:DMR_00060 hypothetical protein
YP_005702319.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: dat:HRM2_26590 GltD1
YP_005702320.1	KEGG: dat:HRM2_26580 HydA2; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit
YP_005702321.1	KEGG: dma:DMR_12950 Fe hydrogenase small subunit; PFAM: iron hydrogenase small subunit
YP_005702322.1	TIGRFAM: hydrogenase, Fe-only; KEGG: dma:DMR_12960 Fe hydrogenase large subunit; PFAM: hydrogenase large subunit domain protein
YP_005702323.1	KEGG: ppd:Ppro_1494 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related
YP_005702324.1	KEGG: dds:Ddes_1504 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin and thiamin synthesis associated
YP_005702325.1	PFAM: fumarate lyase; Fumarase C-like; KEGG: ppd:Ppro_1493 aspartate ammonia-lyase
YP_005702326.1	PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: dds:Ddes_1505 biotin and thiamin synthesis associated
YP_005702327.1	KEGG: tte:TTE1595 hypothetical protein
YP_005702328.1	PFAM: protein of unknown function DUF307; KEGG: reu:Reut_B5323 hypothetical protein
YP_005702329.1	PFAM: regulatory protein TetR; KEGG: rlt:Rleg2_6295 transcriptional regulator, TetR family
YP_005702331.1	KEGG: dsa:Desal_2665 putative transcriptional regulator, ModE family; manually curated; PFAM: regulatory protein LysR
YP_005702332.1	KEGG: dds:Ddes_1303 hypothetical protein
YP_005702333.1	PFAM: integrase family protein; KEGG: dol:Dole_2954 integrase family protein
YP_005702334.1	KEGG: sjp:SJA_P1-01890 putative phage transcriptional regulator AlpA
YP_005702336.1	KEGG: kcr:Kcr_1527 DNA polymerase II large subunit
YP_005702337.1	PFAM: CI repressor; KEGG: dde:Dde_2949 DNA-binding protein, putative
YP_005702340.1	KEGG: mkm:Mkms_5796 helicase domain-containing protein
YP_005702341.1	KEGG: hypothetical protein
YP_005702342.1	KEGG: bgl:bglu_1g23810 hypothetical protein
YP_005702343.1	KEGG: sbn:Sbal195_0370 hypothetical protein
YP_005702344.1	KEGG: bbt:BBta_1158 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_005702345.1	KEGG: bbt:BBta_1159 putative 5-methylcytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase
YP_005702346.1	KEGG: dsa:Desal_2151 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_005702347.1	manually curated; PFAM: helix-turn-helix domain protein; KEGG: gka:GK0494 transcriptional repressor of PBSX genes; SMART: helix-turn-helix domain protein
YP_005702348.1	KEGG: dsa:Desal_2384 hypothetical protein
YP_005702349.1	TIGRFAM: prevent-host-death family protein; KEGG: azo:azo2023 hypothetical protein
YP_005702350.1	KEGG: hsa:100292623 hypothetical protein LOC100292623
YP_005702351.1	KEGG: dsy:DSY2199 hypothetical protein
YP_005702352.1	KEGG: nve:NEMVE_v1g206838 hypothetical protein
YP_005702353.1	KEGG: ara:Arad_4108 hypothetical protein
YP_005702354.1	PFAM: integrase family protein; KEGG: ctc:pE88_50 integrase/recombinase
YP_005702355.1	KEGG: bcv:Bcav_1256 DNA binding domain protein, excisionase family
YP_005702356.1	KEGG: lxx:Lxx13200 acetolactate synthase 1 catalytic subunit
YP_005702357.1	KEGG: mar:MAE_12670 hypothetical protein
YP_005702358.1	KEGG: bpf:BpOF4_17205 hypothetical protein
YP_005702359.1	TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mgm:Mmc1_2896 XRE family plasmid maintenance system antidote protein; SMART: helix-turn-helix domain protein
YP_005702360.1	PFAM: plasmid maintenance system killer; KEGG: mag:amb0661 plasmid maintenance system killer protein
YP_005702361.1	KEGG: cro:ROD_26091 hypothetical protein
YP_005702362.1	KEGG: plt:Plut_0821 hypothetical protein
YP_005702363.1	KEGG: sme:SMc01942 urease accessory protein
YP_005702364.1	KEGG: ajs:Ajs_0939 hypothetical protein
YP_005702365.1	KEGG: dsa:Desal_2352 phage uncharacterized protein
YP_005702366.1	KEGG: dds:Ddes_0718 hypothetical protein
YP_005702367.1	KEGG: ecg:E2348C_2756 hypothetical protein
YP_005702368.1	KEGG: dde:Dde_2550 hypothetical protein
YP_005702369.1	KEGG: dsa:Desal_1405 hypothetical protein
YP_005702370.1	KEGG: dde:Dde_2548 hypothetical protein
YP_005702371.1	KEGG: dde:Dde_2547 hypothetical protein
YP_005702372.1	KEGG: ddr:Deide_02000 conserved hypothetical protein, precursor
YP_005702373.1	KEGG: mxa:MXAN_3056 hypothetical protein
YP_005702374.1	KEGG: dde:Dde_2546 hypothetical protein
YP_005702375.1	KEGG: dde:Dde_2545 hypothetical protein
YP_005702376.1	KEGG: dde:Dde_2543 hypothetical protein
YP_005702377.1	KEGG: ade:Adeh_2705 response regulator receiver
YP_005702378.1	KEGG: xca:xccb100_1252 hypothetical protein
YP_005702379.1	KEGG: xca:xccb100_1251 type I site-specific DNA-methyltransferase catalytic subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase
YP_005702380.1	KEGG: dap:Dacet_1979 hypothetical protein
YP_005702381.1	PFAM: restriction modification system DNA specificity domain; KEGG: ypb:YPTS_4099 restriction modification system DNA specificity subunit
YP_005702382.1	KEGG: tit:Thit_1410 protein of unknown function DUF2188
YP_005702383.1	TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: xcb:XC_1204 HsdR protein; SMART: DEAD-like helicase
YP_005702384.1	PFAM: protein of unknown function DUF45; KEGG: ypb:YPTS_4096 hypothetical protein
YP_005702385.1	KEGG: sse:Ssed_3640 hypothetical protein
YP_005702386.1	PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: glo:Glov_0021 beta-lactamase domain protein
YP_005702387.1	KEGG: npu:Npun_F5233 TatD-related deoxyribonuclease
YP_005702388.1	manually curated; KEGG: apb:SAR116_2344 hypothetical protein
YP_005702389.1	KEGG: apb:SAR116_2345 hypothetical protein
YP_005702390.1	KEGG: dds:Ddes_0258 hypothetical protein
YP_005702391.1	TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator
YP_005702392.1	PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: dds:Ddes_1769 glutamyl-tRNA synthetase class Ic
YP_005702393.1	KEGG: dps:DP2880 hypothetical protein
YP_005702394.1	PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator
YP_005702395.1	KEGG: drt:Dret_1332 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase
YP_005702396.1	KEGG: dde:Dde_1999 glycosyl transferase, group 2 family protein
YP_005702397.1	KEGG: dds:Ddes_1168 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_005702398.1	PFAM: protein of unknown function DUF558; KEGG: dde:Dde_1997 16S ribosomal RNA methyltransferase RsmE
YP_005702399.1	KEGG: dde:Dde_1996 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel
YP_005702400.1	KEGG: dde:Dde_1995 hypothetical protein
YP_005702401.1	KEGG: dds:Ddes_1171 putative GAF sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein
YP_005702402.1	KEGG: dde:Dde_1993 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl
YP_005702403.1	PFAM: inositol monophosphatase; KEGG: dde:Dde_1992 inositol-1-monophosphatase
YP_005702404.1	PFAM: NUDIX hydrolase; KEGG: dde:Dde_1991 isopentenyl-diphosphate delta-isomerase
YP_005702405.1	KEGG: dde:Dde_1990 SSU ribosomal protein S18P alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase
YP_005702406.1	TIGRFAM: triosephosphate isomerase; KEGG: dde:Dde_1989 triosephosphate isomerase; PFAM: triosephosphate isomerase
YP_005702407.1	KEGG: dds:Ddes_1177 preprotein translocase, SecG subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit
YP_005702408.1	KEGG: dsa:Desal_3111 hypothetical protein
YP_005702409.1	PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dde:Dde_1980 transcriptional regulator, putative
YP_005702410.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: lip:LI0871 acyltransferase
YP_005702411.1	PFAM: protein of unknown function DUF374; KEGG: dde:Dde_1961 hypothetical protein
YP_005702412.1	KEGG: dde:Dde_1960 lipid A export ATP-binding/permease protein MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase
YP_005702413.1	TIGRFAM: selenium metabolism protein YedF; KEGG: dde:Dde_1959 hypothetical protein
YP_005702414.1	KEGG: dde:Dde_1958 pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein
YP_005702415.1	KEGG: dds:Ddes_1206 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA
YP_005702416.1	KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase
YP_005702417.1	KEGG: lip:LI0067 translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein
YP_005702418.1	KEGG: dde:Dde_1952 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II
YP_005702419.1	KEGG: dde:Dde_1950 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related
YP_005702420.1	PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative
YP_005702421.1	PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative
YP_005702422.1	KEGG: dds:Ddes_1419 hypothetical protein
YP_005702423.1	KEGG: dsa:Desal_1889 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA
YP_005702424.1	KEGG: dsa:Desal_3009 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_005702425.1	KEGG: dde:Dde_1968 TRASH
YP_005702426.1	KEGG: dba:Dbac_1456 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK
YP_005702427.1	KEGG: dde:Dde_1970 LL-diaminopimelate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: aminotransferase class I and II
YP_005702428.1	KEGG: dde:Dde_1971 tyrosine recombinase XerD subunit; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein
YP_005702429.1	PFAM: Polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_1972 CBS
YP_005702430.1	PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein
YP_005702431.1	KEGG: dde:Dde_1974 hypothetical protein
YP_005702432.1	KEGG: dde:Dde_1975 hypothetical protein
YP_005702433.1	TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; KEGG: dde:Dde_1976 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein
YP_005702434.1	KEGG: dde:Dde_1977 putative lipoprotein
YP_005702435.1	KEGG: dde:Dde_1978 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_005702436.1	manually curated; PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dma:DMR_01870 putative arsenate reductase; SMART: Protein-tyrosine phosphatase, low molecular weight
YP_005702437.1	manually curated; PFAM: regulatory protein ArsR; KEGG: dde:Dde_3721 ArsR family transcriptional regulator; SMART: regulatory protein ArsR
YP_005702438.1	PFAM: permease; KEGG: hha:Hhal_0589 permease
YP_005702439.1	KEGG: hypothetical protein
YP_005702440.1	TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: dba:Dbac_2571 plasmid maintenance system antidote protein, XRE family; SMART: helix-turn-helix domain protein
YP_005702441.1	PFAM: Protein of unknown function DUF2590; KEGG: dds:Ddes_0254 hypothetical protein
YP_005702442.1	PFAM: protein of unknown function DUF497; KEGG: dds:Ddes_0226 protein of unknown function DUF497
YP_005702443.1	KEGG: dds:Ddes_0227 hypothetical protein
YP_005702444.1	KEGG: vcj:VCD_002181 phage-related tail protein
YP_005702445.1	PFAM: NADPH-dependent FMN reductase; KEGG: pin:Ping_0487 NADPH-dependent FMN reductase
YP_005702446.1	KEGG: dde:Dde_1778 putative manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein
YP_005702447.1	KEGG: dde:Dde_1777 hypothetical protein
YP_005702448.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component
YP_005702449.1	PFAM: PTS system fructose subfamily IIA component; KEGG: dde:Dde_1775 PTS system, IIA component
YP_005702450.1	KEGG: dde:Dde_1774 hypothetical protein
YP_005702451.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 putative PTS IIA-like nitrogen-regulatory protein PtsN
YP_005702452.1	KEGG: dde:Dde_1772 SSU ribosomal protein S30P / sigma 54 modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA
YP_005702453.1	KEGG: dde:Dde_1771 sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor
YP_005702454.1	KEGG: dde:Dde_1770 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005702455.1	PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein
YP_005702456.1	PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein
YP_005702457.1	KEGG: dde:Dde_1767 phosphatase KdsC; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase type 3
YP_005702458.1	KEGG: dde:Dde_1766 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA
YP_005702459.1	TIGRFAM: CTP synthase; KEGG: dde:Dde_1765 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I
YP_005702460.1	KEGG: dde:Dde_1764 phosphoribosylformylglycinamidine synthase I
YP_005702461.1	KEGG: dde:Dde_1763 hypothetical protein
YP_005702462.1	KEGG: dal:Dalk_4092 hypothetical protein
YP_005702463.1	KEGG: dsa:Desal_2490 hypothetical protein
YP_005702464.1	TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: dde:Dde_1757 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein
YP_005702465.1	KEGG: dde:Dde_1756 iojap-related protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein
YP_005702466.1	PFAM: nitroreductase; KEGG: dds:Ddes_2259 nitroreductase
YP_005702467.1	KEGG: dde:Dde_2084 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase
YP_005702468.1	KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein
YP_005702469.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2086 putative glutamate synthase subunit beta
YP_005702470.1	PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein
YP_005702471.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2090 molybdopterin oxidoreductase domain-containing protein
YP_005702472.1	TIGRFAM: NAD+ synthetase; KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_005702473.1	TIGRFAM: dihydrodipicolinate reductase; KEGG: dde:Dde_2092 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase
YP_005702474.1	TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; KEGG: dde:Dde_2093 DNA ligase, NAD-dependent; SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein
YP_005702475.1	KEGG: dde:Dde_2094 hypothetical protein
YP_005702476.1	PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein
YP_005702477.1	TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: dde:Dde_2096 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein
YP_005702478.1	KEGG: dde:Dde_2097 hypothetical protein
YP_005702479.1	TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: dde:Dde_2098 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase
YP_005702480.1	TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: dde:Dde_2099 ATPase; SMART: AAA ATPase
YP_005702481.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dde:Dde_2100 ATP-dependent Clp protease adaptor protein ClpS
YP_005702482.1	PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase
YP_005702483.1	KEGG: dde:Dde_2102 camphor resistance protein CrcB; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein
YP_005702484.1	PFAM: protein of unknown function DUF190; KEGG: dde:Dde_2103 hypothetical protein
YP_005702486.1	KEGG: dma:DMR_21020 sulfite reductase; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein
YP_005702487.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_2104 response regulator receiver domain-containing protein; SMART: response regulator receiver
YP_005702488.1	PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_2105 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type
YP_005702489.1	KEGG: dde:Dde_2106 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein
YP_005702490.1	KEGG: dba:Dbac_1417 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005702491.1	KEGG: dde:Dde_2108 methyl-accepting chemotaxis sensory transducer
YP_005702492.1	KEGG: dde:Dde_2110 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase
YP_005702493.1	TIGRFAM: MJ0042 family finger-like protein; KEGG: lip:LI0615 hypothetical protein
YP_005702494.1	TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_005702495.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dba:Dbac_1857 GCN5-related N-acetyltransferase
YP_005702496.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2114 thioredoxin family protein
YP_005702497.1	PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent)
YP_005702498.1	KEGG: dde:Dde_2116 sigma 70 family protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein
YP_005702499.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2117 TPR repeat-containing protein
YP_005702500.1	KEGG: dds:Ddes_1445 hypothetical protein
YP_005702501.1	KEGG: drt:Dret_0853 hypothetical protein
YP_005702502.1	TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: dde:Dde_2120 ribose-5-phosphate isomerase; PFAM: Ribose/galactose isomerase
YP_005702503.1	TIGRFAM: cysteinyl-tRNA synthetase; KEGG: dde:Dde_2121 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR
YP_005702504.1	KEGG: dde:Dde_2122 TPR repeat-containing protein; PFAM: peptidase M48 Ste24p; SMART: Tetratricopeptide repeat
YP_005702506.1	PFAM: 20S proteasome A and B subunits; KEGG: dde:Dde_2124 ATP-dependent protease peptidase subunit
YP_005702507.1	KEGG: dde:Dde_2125 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein
YP_005702508.1	TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: dde:Dde_2126 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_005702509.1	KEGG: dds:Ddes_1452 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like
YP_005702510.1	TIGRFAM: peptidyl-tRNA hydrolase; KEGG: dde:Dde_2128 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase
YP_005702511.1	PFAM: transcription factor CarD; KEGG: dde:Dde_2129 CarD family transcriptional regulator
YP_005702512.1	TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: dde:Dde_2130 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase
YP_005702513.1	TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; KEGG: dde:Dde_1793 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein
YP_005702514.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, alpha subunit
YP_005702515.1	KEGG: dde:Dde_1791 ferritin; PFAM: Ferritin Dps family protein
YP_005702516.1	KEGG: dde:Dde_1790 hypothetical protein
YP_005702517.1	PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dba:Dbac_0931 phosphoadenosine phosphosulfate reductase
YP_005702518.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sfu:Sfum_0223 pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_005702519.1	KEGG: cqu:CpipJ_CPIJ016529 beadex
YP_005702520.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; response regulator receiver; KEGG: dba:Dbac_1424 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005702521.1	KEGG: app:CAP2UW1_3853 metal dependent phosphohydrolase; PFAM: GAF domain protein; histidine kinase HAMP region domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_005702522.1	PFAM: regulatory protein LysR; KEGG: dde:Dde_3521 Fis family transcriptional regulator
YP_005702523.1	PFAM: molybdopterin binding domain; KEGG: dde:Dde_3538 molybdenum cofactor cytidylyltransferase
YP_005702524.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; [2Fe-2S]-binding domain-containing protein; ferredoxin; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein
YP_005702525.1	PFAM: glucose-inhibited division protein A; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3540 aldehyde dehydrogenase, iron-sulfur subunit
YP_005702526.1	KEGG: dsa:Desal_0297 hypothetical protein
YP_005702527.1	PFAM: Methyltransferase type 11; KEGG: dde:Dde_3542 ubiquinone/menaquinone biosynthesis methylase-like protein
YP_005702528.1	PFAM: C_GCAxxG_C_C family protein; KEGG: dde:Dde_3543 hypothetical protein
YP_005702529.1	KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005702530.1	KEGG: dde:Dde_3545 coenzyme F390 synthetase-like; manually curated; PFAM: AMP-dependent synthetase and ligase
YP_005702531.1	PFAM: protein of unknown function DUF182; KEGG: dde:Dde_3546 xanthine dehydrogenase accessory factor
YP_005702532.1	KEGG: dde:Dde_3547 MobA-like protein-like; PFAM: metal-dependent phosphohydrolase HD sub domain; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SMART: metal-dependent phosphohydrolase HD region
YP_005702533.1	PFAM: Phosphoglycerate mutase; KEGG: dde:Dde_3550 fructose-2 6-bisphosphatase-like protein
YP_005702534.1	PFAM: Methyltransferase type 11; KEGG: mem:Memar_0889 methyltransferase type 11
YP_005702535.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dba:Dbac_1993 membrane protein involved in aromatic hydrocarbon degradation
YP_005702536.1	PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; PAS fold-3 domain protein; KEGG: dba:Dbac_1994 putative PAS/PAC sensor protein
YP_005702538.1	KEGG: azl:AZL_c04560 hemolysin-type calcium-binding region
YP_005702539.1	PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 small-conductance mechanosensitive channel
YP_005702540.1	TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; helicase-associated domain protein; KEGG: mag:amb1260 HrpA-like helicase; SMART: helicase-associated domain protein; DEAD-like helicase ; helicase domain protein
YP_005702541.1	KEGG: putative signal peptide protein
YP_005702542.1	KEGG: dwi:Dwil_GK21172 GK21172 gene product from transcript GK21172-RA
YP_005702543.1	KEGG: azl:AZL_a03620 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein
YP_005702544.1	TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: dde:Dde_1796 fructose 1,6-bisphosphatase II; PFAM: GlpX family protein
YP_005702545.1	KEGG: dde:Dde_1795 hypothetical protein
YP_005702546.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: dds:Ddes_2078 outer membrane chaperone Skp (OmpH)
YP_005702547.1	PFAM: Lytic transglycosylase catalytic; KEGG: dds:Ddes_2079 lytic transglycosylase catalytic
YP_005702548.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_3014 protein of unknown function DUF395 YeeE/YedE
YP_005702549.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pca:Pcar_2856 hypothetical protein
YP_005702550.1	TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dde:Dde_1784 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_005702551.1	TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dde:Dde_1783 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase
YP_005702552.1	KEGG: dde:Dde_1782 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein CHP00095
YP_005702553.1	PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein
YP_005702554.1	PFAM: Conserved hypothetical protein CHP00730; KEGG: dde:Dde_1780 hypothetical protein
YP_005702555.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: lip:LI0343 cytosine/adenosine deaminases
YP_005702556.1	PFAM: integrase family protein; KEGG: drt:Dret_1610 integrase family protein
YP_005702557.1	PFAM: Prophage CP4-57 regulatory; KEGG: ddf:DEFDS_0278 transcriptional regulator
YP_005702558.1	KEGG: sus:Acid_0929 hypothetical protein
YP_005702559.1	PFAM: protein of unknown function DUF1351; KEGG: cbb:CLD_2425 hypothetical protein
YP_005702560.1	KEGG: gsu:GSU2152 hypothetical protein
YP_005702561.1	KEGG: cef:CE2282 valyl-tRNA synthetase
YP_005702563.1	KEGG: saf:SULAZ_1348 flagellum-specific ATP synthase
YP_005702564.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: dsa:Desal_3112 putative phage repressor
YP_005702565.1	manually curated; PFAM: helix-turn-helix domain protein; KEGG: sto:ST2084 transcriptional regulator; SMART: helix-turn-helix domain protein
YP_005702566.1	KEGG: dma:DMR_05660 hypothetical protein
YP_005702567.1	KEGG: rci:RCIX1121 DNA polymerase II small subunit
YP_005702568.1	KEGG: bte:BTH_II1364 DNA methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase
YP_005702569.1	KEGG: azl:AZL_c00010 hypothetical protein
YP_005702570.1	KEGG: bmj:BMULJ_04647 bacteriophage protein
YP_005702571.1	KEGG: cim:CIMG_05837 hypothetical protein
YP_005702572.1	KEGG: ddf:DEFDS_0627 hypothetical protein
YP_005702573.1	KEGG: mag:amb1193 hypothetical protein
YP_005702574.1	KEGG: dds:Ddes_0722 hypothetical protein
YP_005702575.1	KEGG: sme:SMc01942 urease accessory protein
YP_005702576.1	KEGG: bpm:BURPS1710b_1677 GP70; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_005702577.1	KEGG: rsh:Rsph17029_0646 P27 family phage terminase small subunit; manually curated; TIGRFAM: phage terminase, small subunit, , P27 family
YP_005702578.1	PFAM: Terminase; KEGG: bph:Bphy_7140 terminase
YP_005702579.1	KEGG: pmy:Pmen_3972 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein
YP_005702580.1	PFAM: peptidase S14 ClpP; KEGG: lhk:LHK_01773 ATP-dependent Clp protease proteolytic subunit
YP_005702582.1	TIGRFAM: phage major capsid protein, HK97 family; KEGG: mno:Mnod_7329 phage major capsid protein, HK97 family
YP_005702583.1	KEGG: uma:UM02528.1 hypothetical protein
YP_005702584.1	KEGG: smd:Smed_1332 phiE125 gp8 hypothetical protein
YP_005702585.1	TIGRFAM: phage head-tail adaptor; KEGG: aap:NT05HA_0498 phage head-tail adaptor, putative
YP_005702586.1	KEGG: nar:Saro_2417 beta-N-acetylhexosaminidase
YP_005702587.1	PFAM: Protein of unknown function DUF3168; KEGG: cko:CKO_01026 D-cysteine desulfhydrase
YP_005702588.1	KEGG: mno:Mnod_5059 hypothetical protein
YP_005702589.1	KEGG: cbr:CBG07119 Hypothetical protein CBG07119
YP_005702590.1	KEGG: ani:AN9354.2 hypothetical protein
YP_005702591.1	PFAM: Uncharacterised protein family UPF0150; KEGG: dde:Dde_3760 hypothetical protein
YP_005702592.1	PFAM: YcfA family protein; KEGG: YcfA family protein
YP_005702593.1	TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein
YP_005702595.1	KEGG: protein of unknown function DUF58
YP_005702596.1	KEGG: bvi:Bcep1808_3223 hypothetical protein
YP_005702597.1	KEGG: bvi:Bcep1808_3222 hypothetical protein
YP_005702598.1	KEGG: apb:SAR116_2344 hypothetical protein
YP_005702599.1	KEGG: apb:SAR116_2345 hypothetical protein
YP_005702600.1	KEGG: dds:Ddes_0258 hypothetical protein
YP_005702601.1	KEGG: dma:DMR_41750 putative nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein)
YP_005702602.1	KEGG: glo:Glov_1975 hypothetical protein
YP_005702603.1	PFAM: Domain of unknown function DUF1848; KEGG: pdi:BDI_1313 hypothetical protein
YP_005702604.1	KEGG: mac:MA0385 cobaltochelatase subunit CobN
YP_005702605.1	KEGG: ecb:100064948 similar to T-complex protein 1
YP_005702606.1	KEGG: dba:Dbac_2659 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein
YP_005702607.1	KEGG: dde:Dde_2006 hypothetical protein
YP_005702608.1	KEGG: dde:Dde_2007 ATP-dependent protease, putative
YP_005702609.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_2008 HSP20 family protein
YP_005702610.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gur:Gura_0254 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_005702611.1	PFAM: RNA binding S1 domain protein; KEGG: dds:Ddes_1207 RNA binding S1 domain protein
YP_005702612.1	SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: dde:Dde_2013 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein
YP_005702613.1	TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: dde:Dde_2014 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase
YP_005702614.1	TIGRFAM: acetylglutamate kinase; KEGG: dde:Dde_2015 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase
YP_005702615.1	KEGG: dde:Dde_2021 CgeB family protein
YP_005702616.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein
YP_005702617.1	KEGG: dde:Dde_2023 precorrin-2 dehydrogenase; TIGRFAM: siroheme synthase
YP_005702618.1	PFAM: cytochrome c assembly protein; KEGG: dde:Dde_2024 cytochrome c assembly protein, putative
YP_005702619.1	KEGG: dde:Dde_2025 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like
YP_005702620.1	KEGG: dde:Dde_2026 hypothetical protein
YP_005702621.1	KEGG: dde:Dde_2027 ketose-bisphosphate aldolase, class-II; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein
YP_005702622.1	PFAM: Chemotaxis phosphatase CheZ; KEGG: dde:Dde_2148 chemotaxis protein CheZ, putative
YP_005702623.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2151 thioredoxin reductase, putative
YP_005702624.1	PFAM: protein of unknown function DUF34; KEGG: dde:Dde_1729 hypothetical protein
YP_005702625.1	PFAM: protein of unknown function DUF164; KEGG: dde:Dde_1728 hypothetical protein
YP_005702626.1	KEGG: dde:Dde_1726 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_005702627.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase
YP_005702628.1	KEGG: dsa:Desal_3347 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_005702629.1	KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase; PFAM: Stage II sporulation protein E; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver
YP_005702630.1	SMART: ATP-binding region ATPase domain protein; KEGG: dma:DMR_13680 hypothetical protein
YP_005702631.1	KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS
YP_005702632.1	PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein
YP_005702633.1	KEGG: dde:Dde_1715 CgeB family protein
YP_005702634.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein
YP_005702635.1	PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: dde:Dde_1713 hypothetical protein
YP_005702636.1	PFAM: flagellar hook capping protein; KEGG: dde:Dde_1712 basal-body rod modification protein FlgD
YP_005702637.1	KEGG: dde:Dde_1711 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein
YP_005702638.1	KEGG: dde:Dde_1710 hypothetical protein
YP_005702639.1	PFAM: flagellin domain protein; KEGG: dde:Dde_1709 flagellin
YP_005702640.1	SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: dde:Dde_1708 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein
YP_005702641.1	PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein
YP_005702642.1	PFAM: major facilitator superfamily MFS_1; KEGG: lip:LI1013 major facilitator superfamily permease
YP_005702643.1	KEGG: dde:Dde_1702 hypothetical protein
YP_005702644.1	KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB; PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005702645.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1700 CheA signal transduction histidine kinase
YP_005702646.1	PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase
YP_005702647.1	KEGG: dde:Dde_1698 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related
YP_005702648.1	KEGG: phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase
YP_005702649.1	KEGG: dde:Dde_1694 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005702650.1	KEGG: dde:Dde_1693 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein
YP_005702651.1	KEGG: dde:Dde_1692 glycine dehydrogenase subunit 1; PFAM: Glycine cleavage system P-protein-like
YP_005702652.1	KEGG: dde:Dde_1691 glycine dehydrogenase subunit 2
YP_005702653.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1690 dihydrolipoamide dehydrogenase
YP_005702654.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein
YP_005702655.1	KEGG: dde:Dde_1688 hypothetical protein
YP_005702656.1	PFAM: Hpt domain protein; KEGG: npu:Npun_R1685 multi-sensor hybrid histidine kinase
YP_005702657.1	KEGG: dde:Dde_1685 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005702658.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005702659.1	KEGG: dde:Dde_1682 hypothetical protein
YP_005702660.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: amr:AM1_4072 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005702661.1	KEGG: drt:Dret_1307 extracellular ligand-binding receptor
YP_005702662.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein
YP_005702663.1	KEGG: dde:Dde_1680 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC
YP_005702664.1	KEGG: dde:Dde_1679 hypothetical protein
YP_005702665.1	KEGG: dde:Dde_1678 hypothetical protein
YP_005702666.1	KEGG: dde:Dde_1677 hypothetical protein
YP_005702667.1	KEGG: dde:Dde_1676 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005702668.1	TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: dde:Dde_1672 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_005702669.1	KEGG: cqu:CpipJ_CPIJ000761 expanded
YP_005702670.1	KEGG: dba:Dbac_0044 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005702671.1	PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dds:Ddes_1842 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_005702672.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sdn:Sden_2565 DNA-binding transcriptional activator GcvA
YP_005702673.1	PFAM: Auxin Efflux Carrier; KEGG: dde:Dde_0880 hypothetical protein
YP_005702674.1	KEGG: dsa:Desal_0917 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005702675.1	KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein
YP_005702676.1	PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit
YP_005702677.1	KEGG: dba:Dbac_1296 transcriptional regulator-like protein
YP_005702678.1	PFAM: ERF family protein; KEGG: lip:LI0182 putative recombination protein-phage associated
YP_005702679.1	KEGG: dde:Dde_3432 hypothetical protein
YP_005702680.1	KEGG: lip:LI0184 hypothetical protein
YP_005702681.1	KEGG: addiction module toxin, RelE/StbE family; manually curated; PFAM: plasmid stabilization system
YP_005702682.1	KEGG: dze:Dd1591_2452 transcriptional regulator, CopG family
YP_005702683.1	KEGG: dde:Dde_3433 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_005702684.1	KEGG: tps:THAPSDRAFT_11220 hypothetical protein
YP_005702685.1	KEGG: tca:658043 similar to Aspartate aminotransferase, cytoplasmic (Transaminase A) (Glutamate oxaloacetate transaminase 1)
YP_005702686.1	KEGG: dde:Dde_2921 hypothetical protein
YP_005702687.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: dba:Dbac_1233 filamentation induced by cAMP protein Fic
YP_005702688.1	KEGG: dde:Dde_2920 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A
YP_005702691.1	SMART: AAA ATPase; KEGG: nhl:Nhal_1924 hypothetical protein
YP_005702692.1	KEGG: sfu:Sfum_2425 hypothetical protein
YP_005702693.1	KEGG: ter:Tery_0626 tetratricopeptide TPR_2
YP_005702694.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein
YP_005702695.1	PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein
YP_005702696.1	KEGG: dde:Dde_1594 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein
YP_005702697.1	PFAM: PSP1 domain protein; KEGG: dde:Dde_1593 hypothetical protein
YP_005702698.1	KEGG: dde:Dde_1591 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain
YP_005702699.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1590 glycosyl transferase, group 2 family protein
YP_005702700.1	PFAM: phosphofructokinase; KEGG: dde:Dde_1589 diphosphate--fructose-6-phosphate 1-phosphotransferase
YP_005702701.1	PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD
YP_005702702.1	KEGG: dde:Dde_1587 hypothetical protein
YP_005702703.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: dds:Ddes_0977 2-nitropropane dioxygenase NPD
YP_005702704.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1585 site-specific recombinase XerD-like
YP_005702705.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005702706.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 putative signal transduction protein
YP_005702707.1	KEGG: dde:Dde_1582 hypothetical protein
YP_005702708.1	KEGG: dds:Ddes_0966 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein
YP_005702709.1	TIGRFAM: tol-pal system protein YbgF; KEGG: lip:LI0109 hypothetical protein
YP_005702710.1	KEGG: dds:Ddes_1383 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein
YP_005702711.1	KEGG: dde:Dde_1576 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005702712.1	KEGG: dde:Dde_1575 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein
YP_005702713.1	KEGG: dde:Dde_1574 ParA family protein
YP_005702714.1	PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_1573 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type
YP_005702715.1	PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: dde:Dde_1572 heat repeat-containing PBS lyase
YP_005702716.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_1571 response regulator receiver domain-containing protein; SMART: response regulator receiver
YP_005702717.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: app:CAP2UW1_0158 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein
YP_005702719.1	KEGG: dps:DP2299 hypothetical protein
YP_005702720.1	PFAM: flagellin domain protein; KEGG: dde:Dde_1570 flagellin, putative
YP_005702722.1	SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: dde:Dde_1569 metal dependent phosphohydrolase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein
YP_005702723.1	PFAM: extracellular solute-binding protein family 5; KEGG: dma:DMR_35960 putative peptide ABC transporter substrate binding protein
YP_005702724.1	KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_005702725.1	KEGG: cdf:CD3353 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH
YP_005702726.1	KEGG: cdl:CDR20291_3198 hypothetical protein; PFAM: B3/4 domain protein; SMART: B3/4 domain protein
YP_005702727.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: bha:BH0390 hypothetical protein
YP_005702728.1	KEGG: dat:HRM2_21040 hypothetical protein
YP_005702729.1	KEGG: dds:Ddes_0209 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_005702730.1	KEGG: lip:LI0506 thiamine biosynthesis protein ThiF; TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein
YP_005702731.1	TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; KEGG: dds:Ddes_2167 thiazole biosynthesis protein ThiH; SMART: biotin and thiamin synthesis associated
YP_005702732.1	PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase
YP_005702733.1	KEGG: tro:trd_0402 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein
YP_005702734.1	KEGG: dsa:Desal_2509 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp
YP_005702735.1	TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: dds:Ddes_0382 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane
YP_005702736.1	KEGG: dde:Dde_3029 carbon monoxide dehydrogenase accessory protein CooC, putative
YP_005702737.1	PFAM: UspA domain-containing protein; KEGG: dma:DMR_42220 putative universal stress protein
YP_005702738.1	PFAM: protein of unknown function DUF490; KEGG: mpo:Mpop_2889 protein of unknown function DUF490
YP_005702739.1	PFAM: surface antigen (D15); KEGG: dds:Ddes_0465 surface antigen (D15)
YP_005702740.1	KEGG: dde:Dde_3201 iron-sulfur cluster-binding/ATPase domain-containing protein
YP_005702741.1	KEGG: drt:Dret_0442 cobyrinic acid ac-diamide synthase
YP_005702742.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dma:DMR_41220 fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein
YP_005702743.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0622 hypothetical protein
YP_005702744.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0621 dinitrogenase iron-molybdenum cofactor biosynthesis protein
YP_005702745.1	PFAM: ATPase-like, ParA/MinD; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0620 cobyrinic acid ac-diamide synthase
YP_005702746.1	KEGG: dma:DMR_20020 L-lactate permease; TIGRFAM: L-lactate transport; PFAM: L-lactate permease
YP_005702747.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_2181 transcriptional regulatory protein
YP_005702748.1	manually curated; KEGG: slt:Slit_0012 multi-sensor signal transduction histidine kinase
YP_005702749.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: chy:CHY_0697 xanthine/uracil permease family protein
YP_005702750.1	KEGG: dde:Dde_2355 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005702751.1	PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative
YP_005702752.1	PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative
YP_005702753.1	PFAM: peptidase A24A prepilin type IV; KEGG: dde:Dde_2358 hypothetical protein
YP_005702754.1	KEGG: dde:Dde_2359 putative pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein
YP_005702755.1	PFAM: type II and III secretion system protein; transport-associated; KEGG: dde:Dde_2360 type II/III secretion system protein
YP_005702756.1	KEGG: dde:Dde_2361 hypothetical protein
YP_005702757.1	KEGG: dde:Dde_2362 response regulator receiver domain-containing protein
YP_005702758.1	PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein
YP_005702759.1	PFAM: Type II secretion system F domain; KEGG: dde:Dde_2364 hypothetical protein
YP_005702760.1	PFAM: Type II secretion system F domain; KEGG: dde:Dde_2365 hypothetical protein
YP_005702761.1	KEGG: dde:Dde_2366 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_005702762.1	PFAM: TadE family protein; KEGG: dde:Dde_2367 hypothetical protein
YP_005702763.1	KEGG: dde:Dde_2368 von Willebrand factor, type A; PFAM: Protein of unknown function DUF2134, membrane; von Willebrand factor type A; SMART: von Willebrand factor type A
YP_005702764.1	PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein
YP_005702765.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: dde:Dde_2370 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver
YP_005702766.1	KEGG: dma:DMR_15480 hypothetical protein
YP_005702767.1	PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: dma:DMR_11960 hypothetical protein
YP_005702768.1	KEGG: dsa:Desal_0415 hypothetical protein
YP_005702769.1	PFAM: Uncharacterised protein family UPF0324; KEGG: dde:Dde_0876 hypothetical protein
YP_005702770.1	KEGG: dba:Dbac_1599 hypothetical protein
YP_005702771.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: uma:UM02469.1 hypothetical protein
YP_005702772.1	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-grasp domain protein; CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP-forming) alpha subunit / succinyl-CoA synthetase (ADP-forming) beta subunit; SMART: CoA-binding domain protein
YP_005702773.1	KEGG: dde:Dde_2335 hypothetical protein
YP_005702774.1	PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein
YP_005702775.1	TIGRFAM: thymidylate kinase; KEGG: dde:Dde_2338 thymidylate kinase; PFAM: thymidylate kinase
YP_005702776.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_2339 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_005702777.1	KEGG: dde:Dde_2340 exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE
YP_005702778.1	TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II
YP_005702779.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_005702780.1	PFAM: chloramphenicol acetyltransferase; KEGG: dma:DMR_43300 putative chloramphenicol acetyltransferase
YP_005702782.1	KEGG: dsa:Desal_0783 serine dehydratase alpha chain; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain
YP_005702783.1	PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: dma:DMR_39890 hypothetical protein
YP_005702784.1	PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: dde:Dde_2344 hypothetical protein
YP_005702785.1	TIGRFAM: RNA polymerase-binding protein DksA; KEGG: dde:Dde_2345 TraR/DksA family transcriptional regulator
YP_005702787.1	KEGG: rbi:RB2501_03715 molybdopterin oxidoreductase, iron-sulfur binding subunit
YP_005702788.1	KEGG: bgl:bglu_4p0110 YadA C-terminal domain protein
YP_005702789.1	KEGG: bra:BRADO3646 tail fiber protein
YP_005702790.1	PFAM: NLP/P60 protein; KEGG: bra:BRADO3645 tail assembly protein homolog
YP_005702791.1	PFAM: Domain of unknown function DUF1833; KEGG: bra:BRADO3644 hypothetical protein
YP_005702792.1	KEGG: xau:Xaut_3718 hypothetical protein
YP_005702793.1	KEGG: hth:HTH_0891 phage tail tape measure protein
YP_005702794.1	KEGG: pfo:Pfl01_1886 heat shock protein HSP70
YP_005702795.1	KEGG: rsq:Rsph17025_3706 hypothetical protein
YP_005702796.1	KEGG: pmf:P9303_01621 glutathione peroxidase
YP_005702797.1	KEGG: aav:Aave_3619 extracellular solute-binding protein
YP_005702798.1	KEGG: bbr:BB2632 3-hydroxyisobutyrate dehydrogenase
YP_005702799.1	KEGG: saq:Sare_4128 peptidase M16 domain-containing protein
YP_005702800.1	KEGG: cme:CMT185C probable MAP kinase kinase kinase (MAP3K)
YP_005702801.1	KEGG: dsa:Desal_2965 hypothetical protein
YP_005702802.1	PFAM: Lytic transglycosylase catalytic; KEGG: dma:DMR_25140 hypothetical protein
YP_005702803.1	KEGG: dma:DMR_25100 hypothetical membrane protein; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis
YP_005702804.1	KEGG: SH3 type 3 domain protein
YP_005702805.1	KEGG: lhk:LHK_01651 putative capsid protein of prophage
YP_005702806.1	KEGG: xal:XALc_0211 hypothetical phage-related protein
YP_005702807.1	PFAM: peptidase S49; KEGG: rsh:Rsph17029_3360 peptidase S49
YP_005702808.1	KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda
YP_005702809.1	KEGG: str:Sterm_2513 hypothetical protein
YP_005702810.1	KEGG: bcu:BCAH820_B0246 hypothetical protein
YP_005702811.1	KEGG: bgl:bglu_1g24100 adenine specific DNA methyltransferase, putative; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_005702812.1	KEGG: pin:Ping_3110 hypothetical protein
YP_005702813.1	PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit
YP_005702814.1	KEGG: mmw:Mmwyl1_2510 Rha family phage regulatory protein; TIGRFAM: phage regulatory protein, Rha family; PFAM: Phage regulatory protein, Rha-like
YP_005702815.1	KEGG: bay:RBAM_006060 YdzE
YP_005702816.1	KEGG: cai:Caci_8339 excision promoter, Xis; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory
YP_005702817.1	PFAM: terminase GpA; KEGG: dsa:Desal_2143 terminase GpA
YP_005702818.1	KEGG: dsa:Desal_2144 hypothetical protein
YP_005702819.1	KEGG: ace:Acel_0145 Rieske (2Fe-2S) domain-containing protein
YP_005702820.1	KEGG: dsa:Desal_2146 phage/plasmid primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4 ; TOPRIM domain-containing protein
YP_005702821.1	KEGG: dde:Dde_1017 hypothetical protein
YP_005702822.1	KEGG: npu:Npun_R3728 SpoIID/LytB domain-containing protein
YP_005702823.1	KEGG: scl:sce6804 hypothetical protein
YP_005702825.1	KEGG: tfu:Tfu_0403 hypothetical protein
YP_005702827.1	KEGG: lbz:LbrM13_V2.1230 hypothetical protein
YP_005702828.1	KEGG: dma:DMR_14730 hypothetical protein
YP_005702829.1	KEGG: lma:LmjF23.0350 hypothetical protein
YP_005702830.1	KEGG: oca:OCAR_7446 phage transcriptional regulator, AlpA
YP_005702831.1	PFAM: integrase family protein; KEGG: dol:Dole_2954 integrase family protein
YP_005702832.1	KEGG: dma:DMR_03370 hypothetical protein
YP_005702833.1	KEGG: ank:AnaeK_4404 hypothetical protein
YP_005702834.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_0050 alcohol dehydrogenase, iron-containing
YP_005702835.1	KEGG: dal:Dalk_0906 lytic transglycosylase catalytic; PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; SMART: extracellular solute-binding protein family 3
YP_005702836.1	KEGG: dde:Dde_0809 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP
YP_005702837.1	KEGG: cko:CKO_02849 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_005702838.1	KEGG: yen:YE0649 tryptophan permease; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease
YP_005702839.1	PFAM: YheO-like domain-containing protein; KEGG: dde:Dde_0810 hypothetical protein
YP_005702840.1	PFAM: methyltransferase small; KEGG: dds:Ddes_1002 methyltransferase small
YP_005702841.1	PFAM: protein of unknown function DUF181; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dds:Ddes_1001 protein of unknown function DUF181
YP_005702842.1	KEGG: dde:Dde_2351 hypothetical protein
YP_005702843.1	KEGG: dde:Dde_2352 hypothetical protein
YP_005702844.1	PFAM: nuclease (SNase domain-containing protein); KEGG: dde:Dde_2354 nuclease (SNase-like)
YP_005702845.1	KEGG: drt:Dret_1753 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein
YP_005702846.1	KEGG: dsa:Desal_2394 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein
YP_005702847.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cpc:Cpar_2032 GCN5-related N-acetyltransferase
YP_005702848.1	PFAM: GTPase EngC; KEGG: dba:Dbac_0600 GTPase EngC
YP_005702849.1	KEGG: cdf:CD3324 hypothetical protein
YP_005702850.1	KEGG: dds:Ddes_0455 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n
YP_005702851.1	KEGG: dds:Ddes_0456 hypothetical protein
YP_005702852.1	KEGG: dde:Dde_1543 hypothetical protein
YP_005702853.1	KEGG: dde:Dde_1542 acetyl-CoA carboxylase; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region
YP_005702854.1	KEGG: dde:Dde_1541 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein
YP_005702855.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1540 hypothetical protein
YP_005702856.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein, putative
YP_005702857.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA
YP_005702858.1	KEGG: dde:Dde_1537 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1
YP_005702859.1	KEGG: lip:LI0145 GTP-binding protein LepA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein
YP_005702860.1	KEGG: dde:Dde_1532 hypothetical protein
YP_005702861.1	PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1531 hypothetical protein
YP_005702863.1	PFAM: HI0933 family protein; KEGG: dde:Dde_1530 hypothetical protein
YP_005702864.1	Contains selenocysteine; manually curated; manually curated; KEGG: dma:DMR_38750 hypothetical protein
YP_005702865.1	PFAM: cobalamin biosynthesis protein CbiB; KEGG: dde:Dde_1529 adenosylcobinamide-phosphate synthase
YP_005702866.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1528 RNA methyltransferase
YP_005702867.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: cpc:Cpar_1998 glycoside hydrolase family 3 domain protein
YP_005702868.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein
YP_005702869.1	TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: dde:Dde_2283 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_005702870.1	KEGG: dde:Dde_2284 asparaginase; PFAM: peptidase T2 asparaginase 2
YP_005702871.1	TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: dde:Dde_2285 glycogen branching enzyme; SMART: alpha amylase catalytic sub domain
YP_005702872.1	KEGG: dde:Dde_2286 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1
YP_005702873.1	PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein
YP_005702874.1	KEGG: dde:Dde_2315 hypothetical protein
YP_005702875.1	KEGG: dde:Dde_2316 RNA-binding domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold
YP_005702876.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; KEGG: cvi:CV_3739 peroxidase
YP_005702877.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2317 AMP-binding protein
YP_005702878.1	KEGG: dde:Dde_2318 transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_005702879.1	TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: dde:Dde_2320 DnaA family protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase
YP_005702880.1	TIGRFAM: thymidylate synthase, flavin-dependent; KEGG: dde:Dde_2321 FAD-dependent thymidylate synthase; PFAM: thymidylate synthase complementing protein ThyX
YP_005702881.1	TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: dde:Dde_2322 Holliday junction DNA helicase RuvB; SMART: AAA ATPase
YP_005702882.1	KEGG: dde:Dde_2323 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein
YP_005702883.1	TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: dde:Dde_2324 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC
YP_005702884.1	PFAM: protein of unknown function DUF28; KEGG: dde:Dde_2325 hypothetical protein
YP_005702885.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dde:Dde_2326 ribosomal RNA large subunit methyltransferase J
YP_005702886.1	KEGG: dde:Dde_2327 hypothetical protein
YP_005702887.1	TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: ccv:CCV52592_1393 putative high-molecular-weight surface-exposed protein; SMART: Autotransporter beta- domain protein
YP_005702888.1	KEGG: dsa:Desal_3532 hypothetical protein
YP_005702889.1	KEGG: dde:Dde_0689 hypothetical protein
YP_005702890.1	KEGG: dsa:Desal_3531 hypothetical protein
YP_005702891.1	TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: dsa:Desal_3529 glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein
YP_005702892.1	PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dsa:Desal_3528 formate C-acetyltransferase
YP_005702893.1	KEGG: dsa:Desal_3527 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein
YP_005702894.1	PFAM: protein of unknown function DUF81; KEGG: dsa:Desal_3526 protein of unknown function DUF81
YP_005702895.1	KEGG: dsa:Desal_3525 hypothetical protein
YP_005702896.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: bpa:BPP1098 hypothetical protein
YP_005702897.1	PFAM: amino acid permease-associated region; KEGG: dsa:Desal_3524 amino acid permease-associated region
YP_005702898.1	KEGG: dma:DMR_09210 putative two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005702899.1	KEGG: dsa:Desal_0583 hypothetical protein
YP_005702900.1	KEGG: dde:Dde_1072 hypothetical protein
YP_005702901.1	KEGG: dde:Dde_1074 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease
YP_005702902.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dds:Ddes_1880 NADH dehydrogenase (quinone)
YP_005702903.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dds:Ddes_1881 respiratory-chain NADH dehydrogenase subunit 1
YP_005702904.1	PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dds:Ddes_1882 NADH ubiquinone oxidoreductase 20 kDa subunit
YP_005702905.1	KEGG: dds:Ddes_1883 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_005702906.1	PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dds:Ddes_1884 NADH dehydrogenase (ubiquinone) 30 kDa subunit
YP_005702907.1	KEGG: chy:CHY_1827 carbon monoxide-induced hydrogenase, large subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa
YP_005702908.1	KEGG: gbm:Gbem_0070 hydrogenase nickel insertion protein HypA; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA
YP_005702909.1	KEGG: dds:Ddes_1887 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_005702910.1	PFAM: Methicillin resistance protein; KEGG: dde:Dde_1247 femAB family protein
YP_005702911.1	KEGG: dma:DMR_16780 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005702912.1	KEGG: dde:Dde_2516 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51
YP_005702913.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dsa:Desal_0674 substrate-binding region of ABC-type glycine betaine transport system
YP_005702914.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein
YP_005702915.1	TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; SMART: AAA ATPase; CBS domain containing protein
YP_005702916.1	PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: lip:LI0773 Kef-type K+ transport systems, membrane components
YP_005702917.1	KEGG: mgm:Mmc1_2003 Sel1 domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein
YP_005702918.1	PFAM: Putitive phosphate transport regulator; KEGG: dma:DMR_08640 hypothetical protein
YP_005702919.1	PFAM: phosphate transporter; KEGG: dds:Ddes_1960 phosphate transporter
YP_005702920.1	TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dds:Ddes_1959 transcriptional regulator, TraR/DksA family
YP_005702921.1	PFAM: Conserved hypothetical protein CHP00022; KEGG: tdn:Suden_0251 hypothetical protein
YP_005702922.1	KEGG: dsa:Desal_2891 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005702923.1	KEGG: dde:Dde_1331 metallo-beta-lactamase family protein
YP_005702924.1	KEGG: plu:plu0967 insecticidal toxin complex protein TccC3
YP_005702925.1	PFAM: Tir chaperone family protein; KEGG: pst:PSPTO_5353 type III chaperone protein ShcA
YP_005702926.1	KEGG: dds:Ddes_1131 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase
YP_005702927.1	PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: dde:Dde_1317 hypothetical protein
YP_005702928.1	TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: dde:Dde_1318 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein
YP_005702929.1	KEGG: dds:Ddes_0349 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_005702930.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin, putative
YP_005702931.1	KEGG: dma:DMR_45900 OmpR family two-component response regulator; PFAM: transcriptional regulator domain-containing protein; SMART: transcriptional regulator domain-containing protein
YP_005702932.1	PFAM: Carboxylyase-related protein; KEGG: dde:Dde_1323 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
YP_005702933.1	KEGG: apt:APA01_23580 peroxiredoxin
YP_005702934.1	KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase; PFAM: UTP--glucose-1-phosphate uridylyltransferase
YP_005702935.1	KEGG: dds:Ddes_0981 hypothetical protein
YP_005702936.1	KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; copper ion binding protein; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase
YP_005702937.1	KEGG: dde:Dde_1312 mercuric transport protein periplasmic component; manually curated; PFAM: Heavy metal transport/detoxification protein
YP_005702938.1	KEGG: dde:Dde_1310 hypothetical protein
YP_005702939.1	KEGG: single-stranded nucleic acid binding R3H domain protein
YP_005702940.1	PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA, putative
YP_005702941.1	KEGG: dde:Dde_1307 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K
YP_005702942.1	PFAM: ATPase-like, ParA/MinD; KEGG: dde:Dde_1306 hypothetical protein
YP_005702943.1	KEGG: dde:Dde_1441 Smr protein/MutS2-like; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2
YP_005702944.1	TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent
YP_005702945.1	PFAM: nucleoside diphosphate kinase; KEGG: dba:Dbac_2890 nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase
YP_005702946.1	PFAM: protein of unknown function DUF610 YibQ; KEGG: dde:Dde_1438 hypothetical protein
YP_005702947.1	TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: dds:Ddes_0896 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein
YP_005702948.1	PFAM: Peptidase M23; KEGG: dde:Dde_1436 M24/M37 family peptidase
YP_005702949.1	KEGG: dba:Dbac_2870 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; Helix-hairpin-helix DNA-binding class 1
YP_005702950.1	PFAM: ribosomal L11 methyltransferase; KEGG: dde:Dde_1432 50S ribosomal protein L11P methyltransferase
YP_005702951.1	KEGG: drt:Dret_2155 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005702952.1	KEGG: dde:Dde_1430 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005702953.1	KEGG: dde:Dde_1429 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_005702954.1	KEGG: dde:Dde_1428 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005702955.1	KEGG: dde:Dde_1427 hypothetical protein
YP_005702956.1	KEGG: dde:Dde_1426 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III
YP_005702957.1	TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: dde:Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase
YP_005702958.1	TIGRFAM: alpha-glucan phosphorylase; KEGG: dde:Dde_1424 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_005702959.1	TIGRFAM: gid protein; KEGG: dde:Dde_1422 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A
YP_005702960.1	KEGG: rpe:RPE_4080 hypothetical protein
YP_005702961.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein
YP_005702962.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1486 glycosyl transferase, group 2 family protein
YP_005702963.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1485 glycosyl transferase, group 2 family protein
YP_005702964.1	KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)-methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU)
YP_005702965.1	KEGG: dde:Dde_1483 hypothetical protein
YP_005702966.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1400 putative signal transduction protein
YP_005702967.1	KEGG: dde:Dde_1399 ATPase; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase
YP_005702968.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1381 ferric reductase-like
YP_005702969.1	KEGG: dde:Dde_1379 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_005702970.1	KEGG: dde:Dde_1378 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase
YP_005702971.1	PFAM: aminotransferase class I and II; KEGG: rci:RRC4 putative aminotransferase
YP_005702972.1	PFAM: protein of unknown function DUF1009; KEGG: dde:Dde_1375 hypothetical protein
YP_005702973.1	KEGG: dde:Dde_1374 UDP-N-acetylglucosamine acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
YP_005702974.1	KEGG: dde:Dde_1373 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
YP_005702975.1	KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein
YP_005702976.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1371 outer membrane protein OmpH, putative
YP_005702977.1	KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin
YP_005702978.1	KEGG: dde:Dde_1368 OMP85 family outer membrane protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein
YP_005702979.1	KEGG: dde:Dde_1367 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005702980.1	KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214
YP_005702981.1	KEGG: dde:Dde_1365 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type
YP_005702982.1	KEGG: dac:Daci_0117 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain
YP_005702983.1	PFAM: peptidase M16 domain protein; KEGG: dde:Dde_0444 M16 family peptidase putative
YP_005702984.1	KEGG: rce:RC1_3838 ABC transporter, ATP binding protein, putative; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005702985.1	KEGG: rce:RC1_3837 hypothetical protein
YP_005702986.1	KEGG: rce:RC1_3836 hypothetical protein
YP_005702987.1	PFAM: TonB-dependent receptor plug; KEGG: sdl:Sdel_1224 TonB-dependent receptor
YP_005702988.1	PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0448 ABC transporter, periplasmic substrate-binding protein
YP_005702989.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0449 putative peptide transport system permease protein
YP_005702990.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_1540 binding-protein-dependent transport systems inner membrane component
YP_005702991.1	KEGG: dde:Dde_0451 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005702992.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein
YP_005702993.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_3630 biopolymer ExbD/TolR family transporter
YP_005702994.1	KEGG: dba:Dbac_3059 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain
YP_005702995.1	PFAM: Tir chaperone family protein; KEGG: hypothetical protein
YP_005702996.1	KEGG: xce:Xcel_1159 chromosome segregation protein SMC
YP_005702997.1	KEGG: dma:DMR_02000 NtrC family two-component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005702998.1	KEGG: dde:Dde_3535 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005702999.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dma:DMR_02380 dehydrogenase
YP_005703000.1	KEGG: dma:DMR_01980 hypothetical protein
YP_005703001.1	KEGG: dma:DMR_01970 hypothetical protein
YP_005703002.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; KEGG: dma:DMR_01960 putative oxidoreductase
YP_005703003.1	KEGG: drt:Dret_2312 iron-sulfur binding protein
YP_005703004.1	PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dds:Ddes_2101 methyl-viologen-reducing hydrogenase delta subunit
YP_005703005.1	PFAM: FAD dependent oxidoreductase; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A
YP_005703006.1	KEGG: dba:Dbac_0849 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein
YP_005703007.1	KEGG: dma:DMR_01900 heterodisulfide reductase subunit C
YP_005703008.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dba:Dbac_3326 iron-containing alcohol dehydrogenase
YP_005703009.1	KEGG: dma:DMR_43050 hypothetical membrane protein
YP_005703010.1	KEGG: hch:HCH_04173 amino acid ABC transporter periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_005703011.1	KEGG: syn:slr1516 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like
YP_005703012.1	PFAM: EF-Hand, Calmodulin; KEGG: dde:Dde_1362 EF hand domain-containing protein
YP_005703013.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; GAF domain protein; KEGG: dde:Dde_1360 GAF sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005703014.1	manually curated; PFAM: Radical SAM domain protein; Radical SAM domain protein; KEGG: dde:Dde_1359 elongator protein 3/MiaB/NifB; SMART: Elongator protein 3/MiaB/NifB
YP_005703015.1	KEGG: gau:GAU_0330 flagellar motor switch protein FliG
YP_005703016.1	KEGG: dde:Dde_1358 hypothetical protein
YP_005703017.1	PFAM: protein of unknown function DUF55; KEGG: lip:LI0511 hypothetical protein
YP_005703018.1	PFAM: SlyX family protein; KEGG: dde:Dde_1356 SlyX protein
YP_005703019.1	PFAM: VanZ family protein; KEGG: dma:DMR_06500 hypothetical membrane protein
YP_005703020.1	KEGG: pol:Bpro_2041 rhodanese-like protein; manually curated; SMART: Rhodanese domain protein
YP_005703021.1	KEGG: dde:Dde_1354 hypothetical protein
YP_005703022.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: afu:AF0669 4-oxalocrotonate tautomerase, putative
YP_005703023.1	PFAM: nitroreductase; KEGG: dsa:Desal_3763 nitroreductase
YP_005703024.1	PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator
YP_005703025.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: azl:AZL_024540 hypothetical protein
YP_005703026.1	KEGG: dde:Dde_1350 RarD protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane
YP_005703027.1	KEGG: dde:Dde_1349 hypothetical protein
YP_005703028.1	KEGG: dde:Dde_1150 outer membrane lipoprotein-like
YP_005703029.1	KEGG: dds:Ddes_2020 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein
YP_005703030.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dps:DP3110 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_005703031.1	KEGG: dde:Dde_1345 hypothetical protein
YP_005703032.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: lip:LI0097 CorA, CorA-like Mg2+ transporter protein
YP_005703033.1	SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1504 metal dependent phosphohydrolase
YP_005703034.1	PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter, permease protein
YP_005703035.1	PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transport system, permease component
YP_005703036.1	KEGG: dde:Dde_1339 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703037.1	KEGG: dde:Dde_1340 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_005703038.1	KEGG: dde:Dde_1342 hypothetical protein
YP_005703039.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1343 HSP20 family protein
YP_005703040.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1344 HSP20 family protein
YP_005703041.1	PFAM: Uncharacterised conserved protein UCP020606; KEGG: dde:Dde_1503 hypothetical protein
YP_005703042.1	PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin
YP_005703043.1	TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: dde:Dde_1500 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase
YP_005703044.1	KEGG: dds:Ddes_2285 hypothetical protein
YP_005703045.1	KEGG: dde:Dde_1498 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase
YP_005703046.1	TIGRFAM: S-adenosylmethionine synthetase; KEGG: dde:Dde_1496 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase
YP_005703047.1	PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dba:Dbac_2259 twin-arginine translocation protein, TatA/E family subunit
YP_005703048.1	KEGG: dba:Dbac_1045 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease
YP_005703049.1	KEGG: swd:Swoo_3198 enoyl-CoA hydratase/isomerase
YP_005703050.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_0779 NAD-dependent epimerase/dehydratase
YP_005703051.1	KEGG: dde:Dde_2591 hypothetical protein
YP_005703052.1	KEGG: dde:Dde_2592 hypothetical protein
YP_005703053.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter, permease protein
YP_005703054.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter, permease protein
YP_005703055.1	PFAM: SMC domain protein; KEGG: dde:Dde_2596 DNA repair protein RecN
YP_005703056.1	KEGG: dde:Dde_2597 hypothetical protein
YP_005703057.1	KEGG: pesticin domain protein
YP_005703058.1	TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; KEGG: dde:Dde_2598 ribonuclease R; SMART: Cold shock protein
YP_005703059.1	TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: dde:Dde_2600 lipid-A-disaccharide synthase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase
YP_005703060.1	PFAM: protein of unknown function UPF0005; KEGG: dma:DMR_44900 hypothetical membrane protein
YP_005703061.1	manually curated; KEGG: dal:Dalk_2776 protein of unknown function DUF224 cysteine-rich region domain protein; manually curated; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; Contains selenocysteine
YP_005703062.1	PFAM: glycoside hydrolase family 57; KEGG: dde:Dde_2603 hypothetical protein
YP_005703063.1	KEGG: dde:Dde_1063 hypothetical protein
YP_005703064.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_3636 ferredoxin-NADP(+) reductase subunit alpha
YP_005703065.1	KEGG: dde:Dde_3635 putative oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_005703066.1	KEGG: dde:Dde_1062 phosphate binding protein; TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1
YP_005703067.1	KEGG: dde:Dde_1061 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005703068.1	KEGG: dde:Dde_1060 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component
YP_005703069.1	KEGG: dat:HRM2_47150 FdhB8
YP_005703070.1	manually curated; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; manually curated; Contains selenocysteine; KEGG: dba:Dbac_0971 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit
YP_005703071.1	PFAM: Cytochrome c, class III, conserved region; KEGG: drt:Dret_0454 cytochrome c family protein
YP_005703072.1	KEGG: drt:Dret_0454 cytochrome c family protein
YP_005703073.1	KEGG: drt:Dret_0453 hypothetical protein
YP_005703074.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_2652 GCN5-related N-acetyltransferase
YP_005703075.1	KEGG: dds:Ddes_2080 hypothetical protein
YP_005703076.1	PFAM: Late competence development protein ComFB; KEGG: dde:Dde_1058 hypothetical protein
YP_005703077.1	KEGG: dde:Dde_1057 histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein
YP_005703078.1	KEGG: dde:Dde_1055 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703079.1	KEGG: dde:Dde_1054 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
YP_005703080.1	KEGG: dba:Dbac_0599 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_005703081.1	PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_1051 HtpX-2 peptidase
YP_005703082.1	PFAM: thioesterase superfamily protein; KEGG: dde:Dde_1049 phenylacetic acid degradation-related protein
YP_005703083.1	KEGG: dds:Ddes_2053 hypothetical protein
YP_005703084.1	KEGG: lip:LI1049 hypothetical protein
YP_005703085.1	KEGG: rpe:RPE_2486 hypothetical protein
YP_005703086.1	KEGG: dde:Dde_1047 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain
YP_005703087.1	KEGG: dde:Dde_1046 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA
YP_005703088.1	PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dds:Ddes_1116 polypeptide-transport-associated domain protein FtsQ-type
YP_005703089.1	TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dde:Dde_1044 UDP-N-acetylmuramate dehydrogenase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein
YP_005703090.1	KEGG: dde:Dde_1043 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein
YP_005703091.1	KEGG: dde:Dde_1042 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28
YP_005703092.1	KEGG: dds:Ddes_1112 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein
YP_005703093.1	KEGG: dds:Ddes_1111 UDP-N-acetylmuramoylalanine/D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein
YP_005703094.1	KEGG: dde:Dde_1039 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site
YP_005703095.1	KEGG: dde:Dde_1038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein
YP_005703096.1	KEGG: dde:Dde_1037 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein
YP_005703097.1	KEGG: dds:Ddes_1107 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein
YP_005703098.1	KEGG: dde:Dde_1035 hypothetical protein
YP_005703099.1	KEGG: dds:Ddes_1105 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase
YP_005703100.1	KEGG: dde:Dde_1033 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain
YP_005703101.1	TIGRFAM: pyruvate kinase; KEGG: dde:Dde_1032 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta
YP_005703102.1	KEGG: dde:Dde_1031 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_005703103.1	PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein
YP_005703104.1	KEGG: dde:Dde_2605 hypothetical protein
YP_005703105.1	KEGG: dde:Dde_2607 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13
YP_005703106.1	PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9
YP_005703107.1	KEGG: dre:570287 si:dkeyp-122a9.3
YP_005703108.1	PFAM: shikimate kinase; KEGG: dde:Dde_2609 shikimate kinase
YP_005703109.1	KEGG: dde:Dde_2610 hypothetical protein
YP_005703110.1	KEGG: dsa:Desal_1060 putative lipoprotein
YP_005703111.1	PFAM: Cytochrome c, class III, conserved region; KEGG: dde:Dde_3754 cytochrome c3, putative
YP_005703112.1	TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_3755 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_005703113.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2
YP_005703114.1	PFAM: ROSMUCR transcriptional regulator; KEGG: lip:LI0064 transcriptional regulator
YP_005703115.1	KEGG: dde:Dde_2630 phosphoglycerate kinase; PFAM: phosphoglycerate kinase
YP_005703116.1	KEGG: dde:Dde_2631 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region
YP_005703117.1	TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase
YP_005703118.1	KEGG: dde:Dde_2633 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR
YP_005703119.1	KEGG: dde:Dde_2634 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit
YP_005703120.1	KEGG: dde:Dde_2635 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein
YP_005703121.1	KEGG: dde:Dde_2636 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20
YP_005703122.1	KEGG: dde:Dde_2637 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35
YP_005703123.1	KEGG: dds:Ddes_0489 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like
YP_005703124.1	KEGG: dde:Dde_2639 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein
YP_005703125.1	PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dds:Ddes_0545 2-hydroxyglutaryl-CoA dehydratase D-component
YP_005703126.1	TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: dds:Ddes_0546 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type
YP_005703127.1	KEGG: dde:Dde_2641 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane
YP_005703128.1	KEGG: dde:Dde_2642 iron-sulfur cluster-binding protein
YP_005703129.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_1164 alcohol dehydrogenase, iron-containing
YP_005703130.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dsa:Desal_2536 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005703131.1	KEGG: dde:Dde_2644 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp
YP_005703132.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bam:Bamb_0105 (acyl-carrier-protein) phosphodiesterase
YP_005703133.1	KEGG: dde:Dde_2645 hypothetical protein
YP_005703134.1	KEGG: metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_005703135.1	KEGG: dde:Dde_2648 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
YP_005703136.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: drt:Dret_1408 nitrogen-fixing NifU domain protein
YP_005703137.1	KEGG: dde:Dde_2650 hypothetical protein
YP_005703138.1	KEGG: dde:Dde_2651 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE
YP_005703139.1	KEGG: dde:Dde_2652 hypothetical protein
YP_005703140.1	TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2654 biotin--acetyl-CoA-carboxylase ligase; SMART: regulatory protein ArsR
YP_005703141.1	SMART: Elongator protein 3/MiaB/NifB; biotin and thiamin synthesis associated; TIGRFAM: biotin synthase; KEGG: dde:Dde_2655 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein
YP_005703142.1	KEGG: dde:Dde_2656 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III
YP_005703143.1	KEGG: sfu:Sfum_3718 hypothetical protein
YP_005703144.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase
YP_005703145.1	KEGG: dde:Dde_2659 acyl carrier protein, putative
YP_005703146.1	PFAM: Beta-ketoacyl synthase; KEGG: dde:Dde_2660 beta-ketoacyl synthase, putative
YP_005703147.1	KEGG: sfu:Sfum_3713 hypothetical protein
YP_005703148.1	KEGG: dde:Dde_2662 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II
YP_005703149.1	KEGG: dde:Dde_2663 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase
YP_005703150.1	KEGG: dde:Dde_2664 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_005703151.1	KEGG: dde:Dde_2665 hypothetical protein
YP_005703152.1	KEGG: dde:Dde_2667 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_005703153.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_005703154.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; Cache domain protein; KEGG: dde:Dde_0886 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005703155.1	KEGG: dde:Dde_2669 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein
YP_005703156.1	PFAM: FeoA family protein; KEGG: dde:Dde_2670 ferrous iron transport protein A, putative
YP_005703157.1	KEGG: dde:Dde_2672 hypothetical protein
YP_005703158.1	PFAM: FeoA family protein; KEGG: dde:Dde_2673 ferrous ion transport protein, putative
YP_005703159.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1186 M20/M25/M40 family peptidase
YP_005703160.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase
YP_005703161.1	KEGG: dde:Dde_2674 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR
YP_005703162.1	KEGG: tbd:Tbd_0987 multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver
YP_005703163.1	KEGG: dde:Dde_1288 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_005703164.1	KEGG: dds:Ddes_2361 ATP-binding region ATPase domain protein; PFAM: response regulator receiver; Diverse 7TM receptor extracellular region 2; SMART: response regulator receiver; ATP-binding region ATPase domain protein
YP_005703165.1	KEGG: cwo:Cwoe_5732 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005703166.1	PFAM: regulatory protein TetR; KEGG: dde:Dde_1283 TetR family transcriptional regulator
YP_005703167.1	KEGG: dde:Dde_2160 hypothetical protein
YP_005703168.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: dba:Dbac_0023 Mg2 transporter protein CorA family protein
YP_005703169.1	KEGG: dma:DMR_37860 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005703170.1	KEGG: dde:Dde_1281 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703171.1	KEGG: dma:DMR_45890 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein
YP_005703172.1	KEGG: rce:RC1_0686 two-component transcriptional regulator, putative; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver
YP_005703173.1	PFAM: protein of unknown function DUF438; Domain of unknown function DUF1858; Hemerythrin HHE cation binding domain protein; KEGG: dds:Ddes_1165 protein of unknown function DUF438
YP_005703174.1	KEGG: dds:Ddes_0258 hypothetical protein
YP_005703175.1	KEGG: apb:SAR116_2345 hypothetical protein
YP_005703176.1	KEGG: dde:Dde_1065 hypothetical protein
YP_005703177.1	KEGG: dde:Dde_2543 hypothetical protein
YP_005703178.1	KEGG: ecv:APECO1_4050 hypothetical protein
YP_005703179.1	KEGG: dde:Dde_2546 hypothetical protein
YP_005703180.1	KEGG: lif:LinJ29.0910 U3 small nucleolar ribonucleoprotein protein MPP10
YP_005703181.1	KEGG: vap:Vapar_4258 histidine kinase
YP_005703182.1	KEGG: dde:Dde_2547 hypothetical protein
YP_005703183.1	KEGG: dde:Dde_2548 hypothetical protein
YP_005703184.1	KEGG: dde:Dde_2549 hypothetical protein
YP_005703185.1	KEGG: dde:Dde_2550 hypothetical protein
YP_005703186.1	KEGG: dde:Dde_2551 hypothetical protein
YP_005703187.1	KEGG: dma:DMR_15690 hypothetical protein
YP_005703188.1	KEGG: lip:LI0482 flagellar motor protein MotA
YP_005703189.1	PFAM: OmpA/MotB domain protein; KEGG: dds:Ddes_2180 OmpA/MotB domain protein
YP_005703190.1	KEGG: dde:Dde_2557 hypothetical protein
YP_005703191.1	KEGG: dde:Dde_2556 phage uncharacterized protein-like
YP_005703192.1	KEGG: saf:SULAZ_0562 hypothetical membrane protein
YP_005703193.1	KEGG: tye:THEYE_A0371 peptidase, C39 family
YP_005703194.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: tye:THEYE_A0702 tetratricopeptide repeat domain protein
YP_005703195.1	KEGG: alv:Alvin_1375 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_005703196.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: dba:Dbac_1409 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_005703197.1	PFAM: sodium/calcium exchanger membrane region; KEGG: dds:Ddes_0594 sodium/calcium exchanger membrane region
YP_005703198.1	KEGG: dds:Ddes_0593 hypothetical protein
YP_005703199.1	KEGG: dds:Ddes_1988 hypothetical protein
YP_005703200.1	KEGG: dds:Ddes_1989 hypothetical protein
YP_005703201.1	KEGG: mgr:MGG_03960 hypothetical protein
YP_005703202.1	PFAM: Terminase small subunit; KEGG: dde:Dde_2568 hypothetical protein
YP_005703203.1	KEGG: dde:Dde_2564 hypothetical protein
YP_005703204.1	KEGG: rso:RSp0313 multidrug efflux system protein
YP_005703205.1	KEGG: dde:Dde_1168 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_005703206.1	manually curated; KEGG: dde:Dde_2572 hypothetical protein
YP_005703207.1	KEGG: scl:sce5864 hypothetical protein
YP_005703208.1	KEGG: dde:Dde_1153 hypothetical protein
YP_005703209.1	KEGG: cre:CHLREDRAFT_179319 hypothetical protein
YP_005703210.1	KEGG: dde:Dde_1156 hypothetical protein
YP_005703212.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: dde:Dde_1158 transcriptional regulator, putative
YP_005703213.1	KEGG: api:100167325 similar to Rapgap1 CG34374-PD
YP_005703214.1	PFAM: glycosyl transferase group 1; KEGG: drt:Dret_0291 glycosyl transferase group 1
YP_005703215.1	KEGG: bgl:bglu_2g20040 MFS efflux pump, membrane fusion protein, EmrA subfamily protein
YP_005703216.1	KEGG: gem:GM21_2693 histidine kinase; PFAM: Cache type 2 domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; PAS domain containing protein
YP_005703217.1	KEGG: dde:Dde_2853 hypothetical protein
YP_005703218.1	KEGG: dde:Dde_1149 hypothetical protein
YP_005703219.1	KEGG: dds:Ddes_0999 putative lipoprotein
YP_005703220.1	KEGG: dds:Ddes_0999 putative lipoprotein
YP_005703221.1	PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: dba:Dbac_3447 threonyl/alanyl tRNA synthetase SAD
YP_005703222.1	PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; KEGG: dde:Dde_1147 heat shock protein 90
YP_005703223.1	KEGG: dsa:Desal_1386 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH
YP_005703224.1	PFAM: Na+/H+ antiporter NhaC-like; KEGG: dde:Dde_2580 Na+/H+ antiporter family protein
YP_005703225.1	KEGG: dsa:Desal_1391 pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_005703226.1	KEGG: dde:Dde_2582 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP
YP_005703227.1	KEGG: dsa:Desal_1854 hypothetical protein
YP_005703228.1	KEGG: dsa:Desal_1854 hypothetical protein
YP_005703229.1	KEGG: dds:Ddes_0284 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
YP_005703230.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mxa:MXAN_6868 putative 6-pyruvoyl tetrahydrobiopterin synthase
YP_005703231.1	PFAM: Radical SAM domain protein; KEGG: xau:Xaut_3190 hypothetical protein
YP_005703232.1	KEGG: gdj:Gdia_3394 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like
YP_005703233.1	KEGG: pna:Pnap_4517 bilirubin oxidase
YP_005703234.1	PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein
YP_005703235.1	KEGG: dma:DMR_36210 hypothetical protein
YP_005703236.1	KEGG: dds:Ddes_0784 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703237.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0783 binding-protein-dependent transport systems inner membrane component
YP_005703238.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0782 phosphate transporter permease PstC
YP_005703239.1	TIGRFAM: phosphate binding protein; KEGG: dds:Ddes_0781 phosphate binding protein
YP_005703240.1	KEGG: dde:Dde_0981 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein
YP_005703241.1	KEGG: dde:Dde_0980 hypothetical protein
YP_005703242.1	KEGG: dde:Dde_0979 hypothetical protein
YP_005703243.1	TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; KEGG: dde:Dde_0978 phosphodiesterase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein
YP_005703244.1	PFAM: Uncharacterised protein family UPF0126; KEGG: gsu:GSU1208 hypothetical protein
YP_005703245.1	KEGG: bfu:BC1G_11953 hypothetical protein
YP_005703246.1	PFAM: FAD dependent oxidoreductase; KEGG: tpe:Tpen_1127 FAD dependent oxidoreductase
YP_005703247.1	KEGG: bfa:Bfae_21340 succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin
YP_005703248.1	KEGG: dde:Dde_0977 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver
YP_005703249.1	KEGG: dde:Dde_0976 hypothetical protein
YP_005703250.1	KEGG: dma:DMR_28620 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver
YP_005703251.1	PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA-specific-like
YP_005703252.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_34360 putative two-component hybrid sensor and regulator; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein; GAF domain protein
YP_005703253.1	KEGG: dde:Dde_3667 flavodoxin, short chain; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase
YP_005703256.1	PFAM: SNARE associated Golgi protein; KEGG: dds:Ddes_1987 SNARE associated Golgi protein
YP_005703257.1	KEGG: rec:RHECIAT_CH0003295 hypothetical protein
YP_005703258.1	KEGG: L-lactate permease family protein, putative
YP_005703259.1	PFAM: type IV pilus assembly PilZ; KEGG: dma:DMR_17480 hypothetical protein
YP_005703260.1	PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dds:Ddes_0819 putative phage repressor
YP_005703261.1	KEGG: dde:Dde_3347 hypothetical protein
YP_005703262.1	KEGG: dde:Dde_3348 hypothetical protein
YP_005703263.1	PFAM: Transposase-like Mu ; Integrase catalytic region; MuA-transposase/repressor protein CI DNA-binding; KEGG: slt:Slit_0191 transposase-like Mu
YP_005703264.1	KEGG: slt:Slit_0192 bacteriophage DNA transposition B protein
YP_005703265.1	KEGG: slt:Slit_0193 hypothetical protein
YP_005703266.1	KEGG: slt:Slit_0194 regulatory protein, LacI
YP_005703267.1	KEGG: art:Arth_4449 heavy metal translocating P-type ATPase
YP_005703268.1	KEGG: rfr:Rfer_1869 two component LuxR family transcriptional regulator
YP_005703269.1	KEGG: dsy:DSY2191 hypothetical protein
YP_005703270.1	KEGG: dde:Dde_3357 hypothetical protein
YP_005703271.1	KEGG: pag:PLES_15631 hypothetical protein
YP_005703272.1	PFAM: Mor transcription activator domain protein; KEGG: lhk:LHK_01158 putative bacteriophage DNA transposition protein B
YP_005703273.1	KEGG: slt:Slit_0215 hypothetical protein
YP_005703274.1	KEGG: bcj:BCAS0534 holin
YP_005703275.1	PFAM: Lytic transglycosylase catalytic; KEGG: lip:LIC036 putative lytic murein transglycosylase precursor
YP_005703276.1	KEGG: hip:CGSHiEE_01085 cell envelope integrity inner membrane protein TolA
YP_005703277.1	KEGG: dra:DR_A0292 hypothetical protein
YP_005703278.1	KEGG: lhk:LHK_01154 hypothetical protein
YP_005703279.1	KEGG: bvi:Bcep1808_1310 hypothetical protein
YP_005703280.1	PFAM: protein of unknown function DUF1804; KEGG: slt:Slit_0222 protein of unknown function DUF1804
YP_005703281.1	TIGRFAM: phage uncharacterized protein; KEGG: pag:PLES_15721 phage uncharacterized protein
YP_005703282.1	PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein
YP_005703283.1	KEGG: bcj:BCAS0526 phage Mu F virion morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7
YP_005703284.1	TIGRFAM: phage virion morphogenesis protein; KEGG: tgr:Tgr7_0435 phage virion morphogenesis protein
YP_005703285.1	PFAM: Mu-like prophage I protein; KEGG: bvi:Bcep1808_1303 hypothetical protein
YP_005703286.1	KEGG: lip:LIC067 hypothetical protein
YP_005703287.1	KEGG: kra:Krad_1551 DNA-binding protein
YP_005703288.1	PFAM: protein of unknown function DUF1320; KEGG: slt:Slit_0232 protein of unknown function DUF1320
YP_005703289.1	PFAM: Domain of unknown function DUF1834; KEGG: slt:Slit_0233 domain of unknown function DUF1834
YP_005703290.1	KEGG: hsm:HSM_0675 hypothetical protein
YP_005703291.1	KEGG: lhk:LHK_01152 probable phage sheath protein
YP_005703292.1	KEGG: vvu:VV1_0379 hypothetical protein
YP_005703293.1	KEGG: lhk:LHK_01151 hypothetical protein
YP_005703294.1	KEGG: lip:LIC072 hypothetical protein
YP_005703295.1	PFAM: tail tape measure protein TP901 core region; KEGG: bvi:Bcep1808_1293 TP901 family phage tail tape measure protein
YP_005703296.1	PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein
YP_005703297.1	KEGG: bbr:BB3615 putative phage tail protein
YP_005703298.1	KEGG: lhk:LHK_01147 probable bacteriophage base plate protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein
YP_005703299.1	PFAM: GP46 family protein; KEGG: bbr:BB3613 hypothetical protein
YP_005703300.1	PFAM: Baseplate J family protein; KEGG: lhk:LHK_01145 probable phage FluMu protein GP47
YP_005703301.1	KEGG: lip:LIC089 hypothetical protein
YP_005703302.1	KEGG: ypb:YPTS_1377 tail collar domain-containing protein
YP_005703303.1	KEGG: dds:Ddes_0258 hypothetical protein
YP_005703304.1	manually curated; KEGG: dde:Dde_3395 hypothetical protein
YP_005703305.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dma:DMR_29400 hypothetical protein
YP_005703306.1	PFAM: Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; KEGG: dds:Ddes_0938 domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme
YP_005703307.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0972 phenylacetate-CoA ligase
YP_005703308.1	PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein
YP_005703309.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_0974 RNA methyltransferase
YP_005703310.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; KEGG: dsa:Desal_1083 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005703311.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dba:Dbac_1886 pyruvate phosphate dikinase PEP/pyruvate-binding
YP_005703312.1	KEGG: dds:Ddes_2118 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703313.1	KEGG: dsa:Desal_2946 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703314.1	PFAM: inner-membrane translocator; KEGG: dsa:Desal_2945 inner-membrane translocator
YP_005703315.1	PFAM: inner-membrane translocator; KEGG: dsa:Desal_2944 inner-membrane translocator
YP_005703316.1	PFAM: Extracellular ligand-binding receptor; KEGG: dds:Ddes_2114 extracellular ligand-binding receptor
YP_005703317.1	KEGG: dba:Dbac_1615 hypothetical protein
YP_005703318.1	KEGG: lip:LI0012 hypothetical protein
YP_005703319.1	KEGG: dde:Dde_0801 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_005703320.1	TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_005703321.1	KEGG: gdi:GDI_3005 putative flavoproteins oxidoreductases
YP_005703322.1	KEGG: dma:DMR_11840 putative cobalt-precorrin-6A synthase; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein
YP_005703323.1	PFAM: methylamine utilisation MauE; KEGG: dde:Dde_0805 hypothetical protein
YP_005703324.1	KEGG: dde:Dde_0806 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein
YP_005703325.1	KEGG: drt:Dret_1057 C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein
YP_005703326.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aeh:Mlg_2472 alcohol dehydrogenase
YP_005703327.1	KEGG: dde:Dde_0799 hypothetical protein
YP_005703328.1	PFAM: Radical SAM domain protein; KEGG: dde:Dde_0798 hypothetical protein
YP_005703329.1	PFAM: Radical SAM domain protein; KEGG: dde:Dde_0797 hypothetical protein
YP_005703330.1	PFAM: protein of unknown function DUF178; KEGG: dds:Ddes_1281 protein of unknown function DUF178
YP_005703331.1	KEGG: cwo:Cwoe_0407 major facilitator superfamily MFS_1
YP_005703332.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0791 hypothetical protein
YP_005703333.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0788 TPR repeat-containing protein; SMART: Tetratricopeptide repeat
YP_005703334.1	PFAM: nitroreductase; KEGG: drt:Dret_2187 nitroreductase
YP_005703335.1	KEGG: dde:Dde_0786 metallo-beta-lactamase family protein
YP_005703337.1	KEGG: dde:Dde_0785 iron-sulfur flavoprotein, putative
YP_005703338.1	PFAM: phosphoribosyltransferase; KEGG: lip:LI1111 amidophosphoribosyltransferases
YP_005703339.1	PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dps:DP0758 hypothetical protein
YP_005703340.1	KEGG: dde:Dde_0774 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005703341.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: dds:Ddes_1736 import inner membrane translocase subunit Tim44
YP_005703342.1	PFAM: protein of unknown function DUF111; KEGG: dde:Dde_0766 hypothetical protein
YP_005703343.1	PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dba:Dbac_2862 protein of unknown function DUF161
YP_005703344.1	KEGG: dde:Dde_0765 CBS; PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; SMART: CBS domain containing protein
YP_005703345.1	TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; KEGG: dds:Ddes_1917 sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein
YP_005703346.1	KEGG: dde:Dde_0761 hypothetical protein
YP_005703347.1	PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 putative ABC transporter solute-binding protein
YP_005703348.1	PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dol:Dole_2543 hypothetical protein
YP_005703349.1	KEGG: cms:CMS_0580 DeoR family transcriptional regulator
YP_005703350.1	PFAM: protein of unknown function DUF81; KEGG: drt:Dret_0158 protein of unknown function DUF81
YP_005703351.1	KEGG: dde:Dde_0750 FMN-dependent family dehydrogenase; manually curated; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase
YP_005703352.1	KEGG: dde:Dde_0749 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH
YP_005703353.1	KEGG: dde:Dde_0748 hypothetical protein
YP_005703354.1	KEGG: dde:Dde_0747 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR
YP_005703355.1	PFAM: GPR1/FUN34/yaaH family protein; KEGG: dde:Dde_0237 Gpr1/Fun34/YaaH family protein
YP_005703356.1	KEGG: dde:Dde_0580 cytochrome c family protein
YP_005703357.1	KEGG: dds:Ddes_1238 respiratory-chain NADH dehydrogenase domain 51 kDa subunit
YP_005703358.1	KEGG: dds:Ddes_1239 NQR2 and RnfD family protein; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein
YP_005703359.1	PFAM: FMN-binding domain protein; KEGG: dds:Ddes_1240 FMN-binding domain protein
YP_005703360.1	KEGG: dde:Dde_0584 electron transport complex RsxE subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit
YP_005703361.1	KEGG: dds:Ddes_1242 electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit
YP_005703362.1	KEGG: dds:Ddes_1243 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein
YP_005703363.1	PFAM: ApbE family lipoprotein; KEGG: dde:Dde_0587 hypotehtical protein
YP_005703364.1	KEGG: dma:DMR_28770 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_005703365.1	KEGG: dma:DMR_28780 putative cation translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase
YP_005703366.1	PFAM: PAS fold-3 domain protein; KEGG: dde:Dde_1612 hypothetical protein
YP_005703367.1	KEGG: dde:Dde_1614 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH
YP_005703368.1	KEGG: dsa:Desal_0358 hypothetical protein
YP_005703369.1	KEGG: dde:Dde_1615 hypothetical protein
YP_005703370.1	KEGG: dde:Dde_1616 metallo-beta-lactamase family protein
YP_005703371.1	KEGG: dde:Dde_1617 G3E family GTPase-like protein; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SMART: cobalamin synthesis CobW domain protein
YP_005703372.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: drt:Dret_0916 MotA/TolQ/ExbB proton channel
YP_005703373.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: drt:Dret_0915 biopolymer transport protein ExbD/TolR
YP_005703374.1	TIGRFAM: TonB family protein; KEGG: dsa:Desal_0352 TonB family protein
YP_005703375.1	PFAM: Cytochrome c, class III, conserved region; KEGG: dds:Ddes_0558 cytochrome c class III
YP_005703376.1	KEGG: dds:Ddes_0557 formate dehydrogenase accessory protein
YP_005703377.1	KEGG: dds:Ddes_0556 formate dehydrogenase, beta subunit, putative
YP_005703378.1	manually curated; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; manually curated; Contains selenocysteine; KEGG: dds:Ddes_0555 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit
YP_005703379.1	KEGG: gur:Gura_3497 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein
YP_005703380.1	KEGG: ccs:CCNA_00850 cation/multidrug efflux pump acrB2; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein
YP_005703381.1	KEGG: azo:azo0244 membrane fusion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_005703382.1	PFAM: regulatory protein TetR; KEGG: sjp:SJA_P1-01580 TetR-family transcriptional regulator
YP_005703383.1	PFAM: amidohydrolase 2; KEGG: dde:Dde_1278 amidohydrolase family protein
YP_005703384.1	KEGG: dde:Dde_1275 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7
YP_005703385.1	KEGG: dde:Dde_1274 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component
YP_005703386.1	PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dde:Dde_1273 formate C-acetyltransferase
YP_005703387.1	TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: dde:Dde_1272 radical-activating enzyme; PFAM: Radical SAM domain protein
YP_005703388.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_1270 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein
YP_005703389.1	PFAM: integrase family protein; KEGG: dma:DMR_24670 site-specific recombinase
YP_005703390.1	KEGG: sfu:Sfum_2425 hypothetical protein
YP_005703391.1	KEGG: drt:Dret_0360 death-on-curing family protein
YP_005703392.1	KEGG: hypothetical protein
YP_005703394.1	KEGG: dsa:Desal_1649 transcriptional regulator CII, putative
YP_005703395.1	KEGG: cfa:403809 ribosome binding protein 1 homolog 180kDa (dog)
YP_005703396.1	KEGG: ccs:CCNA_03084 hypothetical protein
YP_005703397.1	SMART: helix-turn-helix domain protein; KEGG: dma:DMR_24900 hypothetical protein
YP_005703398.1	KEGG: bqu:BQ09040 hypothetical protein
YP_005703399.1	PFAM: protein of unknown function DUF450; KEGG: dsa:Desal_2153 protein of unknown function DUF450
YP_005703400.1	SMART: metal-dependent phosphohydrolase HD region; KEGG: metal dependent phosphohydrolase
YP_005703401.1	KEGG: geo:Geob_0580 hypothetical protein
YP_005703402.1	KEGG: vcj:VCD_000855 hypothetical protein
YP_005703403.1	KEGG: rsh:Rsph17029_3386 type II restriction endonuclease, putative; PFAM: Restriction endonuclease EcoRII
YP_005703404.1	PFAM: C-5 cytosine-specific DNA methylase; manually curated; KEGG: mmr:Mmar10_3057 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase
YP_005703405.1	KEGG: sma:SAV_2155 3-hydroxyacyl-CoA dehydrogenase
YP_005703406.1	PFAM: histidine triad (HIT) protein; KEGG: pca:Pcar_0296 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
YP_005703407.1	manually curated; KEGG: dma:DMR_24910 hypothetical protein
YP_005703408.1	KEGG: dds:Ddes_0258 hypothetical protein
YP_005703409.1	KEGG: pfl:PFL_1226 tail fibre protein, putative
YP_005703410.1	KEGG: bph:Bphy_1869 hypothetical protein
YP_005703411.1	PFAM: Baseplate J family protein; KEGG: pol:Bpro_3733 baseplate J-like protein
YP_005703412.1	PFAM: GP46 family protein; KEGG: xbo:XBJ1_2641 Mu-like prophage FluMu protein
YP_005703413.1	KEGG: pen:PSEEN4139 Mu-like phage assembly protein GP45; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein
YP_005703414.1	KEGG: pca:Pcar_1817 Mu-like prophage tail protein gpP
YP_005703416.1	PFAM: DNA circulation family protein; KEGG: pol:Bpro_3737 DNA circulation-like
YP_005703417.1	KEGG: nis:NIS_0476 hypothetical protein
YP_005703418.1	KEGG: bpt:Bpet4420 hypothetical protein
YP_005703419.1	PFAM: Tail tube protein, bacteriophage; KEGG: bph:Bphy_1877 hypothetical protein
YP_005703420.1	KEGG: pol:Bpro_3741 bacteriophage Mu tail sheath
YP_005703421.1	KEGG: ecy:ECSE_2580 hypothetical protein
YP_005703422.1	KEGG: ank:AnaeK_3110 hypothetical protein
YP_005703423.1	KEGG: met:M446_3276 molybdenum cofactor synthesis domain-containing protein
YP_005703424.1	KEGG: drm:Dred_1209 hypothetical protein
YP_005703426.1	KEGG: hba:Hbal_0455 hypothetical protein
YP_005703427.1	PFAM: protein of unknown function DUF847; Peptidoglycan binding domain; KEGG: dds:Ddes_0723 protein of unknown function DUF847
YP_005703428.1	KEGG: dma:DMR_25100 hypothetical membrane protein; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis
YP_005703429.1	KEGG: spu:581224 similar to mp86
YP_005703430.1	KEGG: lhk:LHK_01651 putative capsid protein of prophage
YP_005703431.1	KEGG: xal:XALc_0211 hypothetical phage-related protein
YP_005703432.1	PFAM: peptidase S49; KEGG: lhk:LHK_01653 periplasmic serine proteases (ClpP class)
YP_005703433.1	KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda
YP_005703434.1	KEGG: cbt:CLH_1728 hypothetical protein
YP_005703435.1	KEGG: dma:DMR_14730 hypothetical protein
YP_005703436.1	TIGRFAM: DNA binding domain protein, excisionase family; KEGG: aoe:Clos_0602 DNA binding domain-containing protein
YP_005703437.1	PFAM: terminase GpA; KEGG: dsa:Desal_2143 terminase GpA
YP_005703438.1	KEGG: dps:DP1575 hypothetical protein
YP_005703439.1	KEGG: rsh:Rsph17029_0653 nuclease; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease
YP_005703440.1	KEGG: dal:Dalk_0267 P4 alpha zinc-binding domain protein; PFAM: P4 alpha zinc-binding domain protein; DNA primase catalytic core domain; SMART: P4 alpha zinc-binding domain protein
YP_005703441.1	KEGG: dma:DMR_41960 hypothetical protein; TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4
YP_005703442.1	KEGG: dde:Dde_3058 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein
YP_005703443.1	TIGRFAM: L-seryl-tRNA selenium transferase; KEGG: dde:Dde_3059 selenocysteine synthase; PFAM: Pyridoxal phosphate-dependent transferase
YP_005703444.1	PFAM: peptidase M18 aminopeptidase I; KEGG: dde:Dde_3061 putative aminopeptidase 1
YP_005703445.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3062 alcohol dehydrogenase, iron-containing
YP_005703446.1	KEGG: dsa:Desal_3271 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain
YP_005703447.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dsa:Desal_3273 protein of unknown function DUF6 transmembrane
YP_005703448.1	KEGG: dde:Dde_2953 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703449.1	PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein
YP_005703450.1	KEGG: dde:Dde_2955 hypothetical protein
YP_005703451.1	PFAM: NikR nickel binding; KEGG: dde:Dde_2956 nickel responsive regulator
YP_005703452.1	KEGG: dde:Dde_2957 putative GTP cyclohydrolase; PFAM: protein of unknown function DUF198
YP_005703453.1	PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dma:DMR_31700 putative flagellar basal-body rod protein
YP_005703454.1	KEGG: dde:Dde_2959 Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase
YP_005703455.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2960 TPR repeat-containing protein
YP_005703456.1	PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein
YP_005703457.1	KEGG: mma:MM_1125 hypothetical protein
YP_005703458.1	KEGG: dde:Dde_2962 hypothetical protein
YP_005703459.1	PFAM: amidohydrolase; KEGG: dde:Dde_2963 amidohydrolase family protein
YP_005703460.1	TIGRFAM: aspartate carbamoyltransferase; KEGG: dds:Ddes_1871 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region
YP_005703461.1	KEGG: dde:Dde_2965 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase
YP_005703462.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein
YP_005703463.1	KEGG: dds:Ddes_0445 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein
YP_005703464.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing
YP_005703465.1	KEGG: dma:DMR_28930 UmuC protein; PFAM: UMUC domain protein DNA-repair protein
YP_005703466.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: syw:SYNW1044 putative SOS mutagenesis protein UmuD
YP_005703467.1	KEGG: dde:Dde_2975 hypothetical protein
YP_005703468.1	KEGG: dsa:Desal_3516 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_005703469.1	PFAM: protein of unknown function DUF204; KEGG: dde:Dde_2978 hypothetical protein
YP_005703470.1	KEGG: dde:Dde_2981 hemolysin A; TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein
YP_005703471.1	KEGG: dde:Dde_2982 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31
YP_005703472.1	KEGG: dde:Dde_2983 putative lipoprotein; manually curated; PFAM: protein of unknown function DUF1385
YP_005703473.1	KEGG: dde:Dde_2984 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein
YP_005703474.1	KEGG: dde:Dde_2985 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small
YP_005703475.1	KEGG: dde:Dde_2986 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase
YP_005703476.1	KEGG: dde:Dde_2989 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein
YP_005703477.1	KEGG: dds:Ddes_1629 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33
YP_005703478.1	KEGG: dde:Dde_2990 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein
YP_005703479.1	TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: dde:Dde_2991 transcription antitermination protein NusG; SMART: NGN domain-containing protein; KOW domain protein
YP_005703480.1	TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: dds:Ddes_1632 ribosomal protein L11; SMART: ribosomal protein L11
YP_005703481.1	KEGG: dde:Dde_2993 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1
YP_005703482.1	PFAM: ribosomal protein L10; KEGG: dde:Dde_2994 50S ribosomal protein L10
YP_005703483.1	KEGG: dds:Ddes_1635 ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12
YP_005703484.1	KEGG: dde:Dde_2997 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7
YP_005703485.1	TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; SMART: RNA polymerase I subunit A domain protein
YP_005703486.1	KEGG: dde:Dde_2999 hypothetical protein
YP_005703487.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein
YP_005703488.1	PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_3001 hypothetical protein
YP_005703489.1	TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; PAS fold-4 domain protein; KEGG: dde:Dde_3002 putative PAS/PAC sensor protein; SMART: response regulator receiver; PAS domain containing protein; metal-dependent phosphohydrolase HD region
YP_005703490.1	KEGG: dde:Dde_3003 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005703491.1	TIGRFAM: phosphoglycerate mutase 1 family; KEGG: dde:Dde_3004 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase
YP_005703492.1	PFAM: response regulator receiver; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein
YP_005703493.1	PFAM: protein of unknown function DUF39; KEGG: dde:Dde_3007 hypothetical protein
YP_005703494.1	KEGG: dde:Dde_3008 hypothetical protein
YP_005703495.1	KEGG: dds:Ddes_0093 hypothetical protein
YP_005703496.1	KEGG: drt:Dret_2465 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB
YP_005703497.1	KEGG: dde:Dde_3011 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like
YP_005703498.1	TIGRFAM: orotate phosphoribosyltransferase; KEGG: dds:Ddes_0096 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_005703499.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein
YP_005703500.1	KEGG: lip:LI1000 hypothetical protein
YP_005703501.1	KEGG: dde:Dde_3015 hypothetical protein
YP_005703502.1	KEGG: dde:Dde_3016 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein
YP_005703503.1	PFAM: flagellin domain protein; KEGG: dde:Dde_3018 flagellin N-terminal domain-containing protein
YP_005703504.1	PFAM: protein of unknown function DUF486; KEGG: dds:Ddes_0627 protein of unknown function DUF486
YP_005703505.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dde:Dde_2518 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein
YP_005703506.1	KEGG: dds:Ddes_0267 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain
YP_005703507.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dba:Dbac_0438 protein of unknown function DUF6 transmembrane
YP_005703508.1	KEGG: dde:Dde_0621 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH
YP_005703509.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Cache domain protein; KEGG: tcx:Tcr_1920 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005703510.1	KEGG: dba:Dbac_2263 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase
YP_005703511.1	PFAM: protein of unknown function DUF81; KEGG: dds:Ddes_0811 protein of unknown function DUF81
YP_005703512.1	KEGG: dma:DMR_40110 hypothetical membrane protein
YP_005703513.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_0318 Fis family transcriptional regulator; SMART: AAA ATPase
YP_005703514.1	KEGG: dba:Dbac_2267 hypothetical protein
YP_005703515.1	KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005703516.1	KEGG: dma:DMR_40070 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005703517.1	KEGG: dds:Ddes_0815 hypothetical protein
YP_005703518.1	KEGG: bmr:BMI_II773 phosphogluconate dehydratase
YP_005703519.1	KEGG: dma:DMR_40050 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005703520.1	KEGG: dds:Ddes_0817 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein
YP_005703521.1	KEGG: dsa:Desal_1453 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein
YP_005703522.1	KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase
YP_005703523.1	PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dde:Dde_3208 acetyltransferase
YP_005703524.1	PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein
YP_005703525.1	PFAM: CheD family protein; KEGG: dde:Dde_3212 CheD, stimulates methylation of MCP proteins
YP_005703526.1	KEGG: dde:Dde_3213 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_005703528.1	PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0082 hypothetical protein
YP_005703529.1	PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: dde:Dde_3214 hypothetical protein
YP_005703530.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU0572 HAD family hydrolase
YP_005703531.1	TIGRFAM: phosphatidylserine decarboxylase related protein; KEGG: dde:Dde_3216 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related
YP_005703532.1	KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_005703533.1	KEGG: dde:Dde_3218 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein
YP_005703534.1	KEGG: dde:Dde_3219 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PFAM: aconitate hydratase domain-containing protein
YP_005703535.1	KEGG: dde:Dde_3220 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein
YP_005703536.1	PFAM: protein of unknown function DUF89; KEGG: dde:Dde_3221 hypothetical protein
YP_005703537.1	TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: dde:Dde_3222 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_005703538.1	KEGG: dde:Dde_3224 phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain protein
YP_005703539.1	TIGRFAM: phage shock protein B; KEGG: dde:Dde_3225 hypothetical protein
YP_005703540.1	KEGG: dde:Dde_3226 phage shock protein A; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein
YP_005703541.1	TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; KEGG: dde:Dde_3227 Fis family transcriptional regulator; SMART: AAA ATPase
YP_005703542.1	KEGG: dde:Dde_3228 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV
YP_005703543.1	KEGG: dma:DMR_39560 hypothetical protein
YP_005703544.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein
YP_005703545.1	PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431 putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
YP_005703546.1	PFAM: glycosyl transferase family 2; KEGG: gem:GM21_3823 glycosyl transferase family 2
YP_005703547.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0428 glycosyltransferase-like protein
YP_005703548.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0427 NAD-dependent epimerase/dehydratase family protein
YP_005703549.1	KEGG: dde:Dde_0428 glycosyltransferase-like protein
YP_005703550.1	KEGG: gem:GM21_2601 hypothetical protein
YP_005703551.1	PFAM: formyl transferase domain protein; KEGG: tro:trd_0824 methionyl-tRNA formyltransferase
YP_005703552.1	KEGG: mag:amb0692 hypothetical protein
YP_005703553.1	PFAM: protein of unknown function DUF692; KEGG: fre:Franean1_4348 hypothetical protein
YP_005703554.1	PFAM: Methyltransferase type 11; KEGG: shl:Shal_1398 methyltransferase type 12
YP_005703555.1	PFAM: Radical SAM domain protein; KEGG: dsa:Desal_1058 radical SAM domain protein
YP_005703556.1	PFAM: Radical SAM domain protein; KEGG: dsa:Desal_0562 radical SAM domain protein
YP_005703557.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cwo:Cwoe_1546 DegT/DnrJ/EryC1/StrS aminotransferase
YP_005703558.1	PFAM: acylneuraminate cytidylyltransferase; Methyltransferase type 12; KEGG: dma:DMR_40450 acylneuraminate cytidylyltransferase family protein
YP_005703559.1	KEGG: ele:Elen_2416 hypothetical protein
YP_005703560.1	PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: mag:amb0080 sialic acid synthase
YP_005703561.1	PFAM: Radical SAM domain protein; KEGG: mno:Mnod_3289 radical SAM domain protein
YP_005703562.1	KEGG: bsu:BSU37890 putative glutamine-dependent sugar transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_005703563.1	PFAM: WbqC-like family protein; KEGG: dma:DMR_40380 hypothetical protein
YP_005703564.1	KEGG: xop:PXO_03686 glutamate-ammonia-ligase adenylyltransferase
YP_005703565.1	PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2892 glycosyl transferase family protein
YP_005703566.1	KEGG: dma:DMR_00560 asparagine synthetase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II
YP_005703567.1	PFAM: Methyltransferase type 11; KEGG: mag:amb3020 hypothetical protein
YP_005703568.1	KEGG: dma:DMR_p1_00150 hypothetical protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005703569.1	PFAM: Methyltransferase type 12; KEGG: ret:RHE_CH00772 putative methyltransferase protein
YP_005703570.1	KEGG: sti:Sthe_2856 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005703571.1	KEGG: gbm:Gbem_3304 Radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005703572.1	KEGG: dds:Ddes_0695 hypothetical protein
YP_005703573.1	KEGG: dde:Dde_3231 putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region
YP_005703574.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3233 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein
YP_005703575.1	KEGG: dde:Dde_3234 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase
YP_005703576.1	KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein
YP_005703577.1	KEGG: dba:Dbac_1045 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease
YP_005703578.1	PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_3239 glycolate oxidase, subunit GlcD
YP_005703579.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein
YP_005703580.1	KEGG: dde:Dde_3241 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein
YP_005703581.1	KEGG: dde:Dde_3242 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase
YP_005703582.1	PFAM: DRTGG domain protein; KEGG: dde:Dde_3243 hypothetical protein
YP_005703583.1	PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein
YP_005703584.1	PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein
YP_005703585.1	KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005703586.1	KEGG: dde:Dde_3247 hypothetical protein
YP_005703587.1	KEGG: dde:Dde_3248 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein
YP_005703588.1	PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein
YP_005703589.1	PFAM: cytochrome c class I; KEGG: dba:Dbac_1543 cytochrome c-553
YP_005703590.1	PFAM: protein of unknown function DUF903; KEGG: pmy:Pmen_2579 hypothetical protein
YP_005703591.1	KEGG: dde:Dde_0264 hypothetical protein
YP_005703592.1	KEGG: dde:Dde_0393 hypothetical protein
YP_005703593.1	KEGG: dde:Dde_0257 histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein
YP_005703594.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein
YP_005703595.1	PFAM: aminotransferase class IV; KEGG: dde:Dde_0255 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase
YP_005703596.1	TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding
YP_005703597.1	KEGG: dde:Dde_0253 hemerythrin; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein
YP_005703598.1	PFAM: protein of unknown function DUF606; KEGG: dde:Dde_0252 hypothetical protein
YP_005703599.1	PFAM: NUDIX hydrolase; KEGG: dde:Dde_0251 mutator MutT protein
YP_005703600.1	KEGG: dde:Dde_0250 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703601.1	PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dde:Dde_0539 protein-L-isoaspartate methyltransferase-like
YP_005703602.1	PFAM: Radical SAM domain protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein
YP_005703603.1	TIGRFAM: ribonuclease, Rne/Rng family; KEGG: dde:Dde_0537 ribonuclease E; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein
YP_005703604.1	PFAM: protein of unknown function DUF208; KEGG: dba:Dbac_3350 protein of unknown function DUF208
YP_005703605.1	TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: dds:Ddes_2205 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB
YP_005703606.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: mno:Mnod_4585 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver
YP_005703607.1	TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dde:Dde_0560 signal recognition particle-docking protein FtsY; SMART: AAA ATPase
YP_005703608.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein
YP_005703609.1	KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver
YP_005703610.1	manually curated; TIGRFAM: integral membrane protein MviN; KEGG: dde:Dde_0543 integral membrane protein MviN; PFAM: virulence factor MVIN family protein
YP_005703611.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dde:Dde_0550 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein
YP_005703612.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 AMP-binding domain protein
YP_005703613.1	KEGG: dde:Dde_0556 MerR family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_005703614.1	KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase
YP_005703615.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: tte:TTE1100 diguanylate cyclase/phosphodiesterase; SMART: GGDEF domain containing protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005703616.1	PFAM: aminodeoxychorismate lyase; KEGG: dds:Ddes_0030 aminodeoxychorismate lyase
YP_005703617.1	KEGG: dde:Dde_0314 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold
YP_005703618.1	PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0312 oxidoreductase
YP_005703619.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative
YP_005703620.1	KEGG: dde:Dde_0307 hypothetical protein
YP_005703621.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dsa:Desal_2414 protein of unknown function DUF6 transmembrane
YP_005703622.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_0306 hypothetical protein
YP_005703623.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dsa:Desal_0285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_005703624.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein
YP_005703625.1	PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator
YP_005703626.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein
YP_005703627.1	KEGG: dde:Dde_0347 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005703628.1	PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0346 MucR family transcriptional regulator
YP_005703629.1	KEGG: dde:Dde_0344 hypothetical protein
YP_005703630.1	KEGG: dde:Dde_0343 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase
YP_005703631.1	KEGG: dde:Dde_0342 precorrin-8X methylmutase; PFAM: Precorrin-8X methylmutase CbiC/CobH
YP_005703632.1	KEGG: dde:Dde_0341 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_005703633.1	KEGG: dds:Ddes_0363 hypothetical protein
YP_005703634.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 OMPP1/FadL/TodX family outer membrane protein
YP_005703635.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pzu:PHZ_c2608 L-aspartate oxidase
YP_005703636.1	KEGG: hch:HCH_03506 hypothetical protein
YP_005703637.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rubredoxin-type Fe(Cys)4 protein
YP_005703638.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dol:Dole_2647 rubrerythrin
YP_005703639.1	PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein
YP_005703641.1	PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein
YP_005703643.1	KEGG: dde:Dde_3629 TolQ protein; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel
YP_005703644.1	KEGG: dds:Ddes_0861 protein TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR
YP_005703645.1	TIGRFAM: protein TolA; TonB family protein; KEGG: dds:Ddes_0860 protein TolA
YP_005703646.1	TIGRFAM: TonB family protein; KEGG: dds:Ddes_0859 hypothetical protein
YP_005703647.1	manually curated; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like beta Propeller containing protein
YP_005703648.1	KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein, putative; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein
YP_005703650.1	TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; Hemerythrin HHE cation binding domain protein; KEGG: kko:Kkor_1389 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_005703651.1	PFAM: cytochrome c class I; KEGG: dde:Dde_0561 cytochrome c family protein
YP_005703652.1	KEGG: dsa:Desal_1359 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like
YP_005703653.1	KEGG: sfu:Sfum_2223 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_005703654.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: mag:amb1056 putative oxidoreductase
YP_005703655.1	KEGG: dde:Dde_0463 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding
YP_005703656.1	KEGG: dde:Dde_3645 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_005703657.1	KEGG: dde:Dde_3646 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I
YP_005703658.1	TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: dde:Dde_3647 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_005703659.1	KEGG: dde:Dde_3649 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein
YP_005703660.1	KEGG: vvi:100265790 hypothetical protein LOC100265790
YP_005703661.1	PFAM: Stress responsive alpha-beta barrel domain-containing protein; KEGG: dde:Dde_0194 hypothetical protein
YP_005703662.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0193 AMP-binding enzyme family protein
YP_005703663.1	PFAM: aminotransferase class V; KEGG: dat:HRM2_08190 aminotransferase, class V (putative purine catabolism protein PucG)
YP_005703664.1	KEGG: dma:DMR_28350 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_005703665.1	PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ctt:CtCNB1_4571 heat shock protein
YP_005703666.1	PFAM: Paraquat-inducible protein A; KEGG: dba:Dbac_0330 paraquat-inducible protein A
YP_005703667.1	PFAM: Paraquat-inducible protein A; KEGG: dba:Dbac_0329 paraquat-inducible protein A
YP_005703668.1	PFAM: Mammalian cell entry related domain protein; KEGG: dba:Dbac_0328 mammalian cell entry related domain protein
YP_005703669.1	PFAM: protein of unknown function DUF330; KEGG: dba:Dbac_0327 protein of unknown function DUF330
YP_005703670.1	PFAM: sugar-binding domain-containing protein; KEGG: dde:Dde_0407 transcriptional regulator, putative
YP_005703671.1	KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent; PFAM: FAD dependent oxidoreductase
YP_005703672.1	PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein
YP_005703673.1	KEGG: dma:DMR_27730 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like
YP_005703674.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_1618 flavodoxin-like fold domain-containing protein
YP_005703675.1	PFAM: nitroreductase; KEGG: dde:Dde_2199 nitroreductase family protein
YP_005703676.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rru:Rru_A3017 3-ketoacyl-(acyl-carrier-protein) reductase
YP_005703677.1	KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_005703678.1	PFAM: polysaccharide export protein; KEGG: dds:Ddes_1826 polysaccharide export protein
YP_005703679.1	KEGG: dds:Ddes_1825 putative lipoprotein
YP_005703680.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_0659 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAC repeat-containing protein
YP_005703681.1	KEGG: dds:Ddes_0544 iron-sulfur cluster-binding protein
YP_005703682.1	KEGG: drt:Dret_0167 cytochrome c family protein
YP_005703683.1	KEGG: drt:Dret_0166 cytochrome b561
YP_005703684.1	KEGG: mav:MAV_2777 acyl-CoA synthetase
YP_005703685.1	PFAM: Phosphoglycerate mutase; 6-phosphofructo-2-kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase
YP_005703686.1	TIGRFAM: 4-alpha-glucanotransferase; KEGG: dde:Dde_0510 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77
YP_005703687.1	KEGG: dde:Dde_0508 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49
YP_005703688.1	KEGG: dde:Dde_0507 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein
YP_005703689.1	TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_0506 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB
YP_005703690.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0505 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005703691.1	TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; KEGG: dde:Dde_0504 putative deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1 family protein
YP_005703692.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_0458 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_005703693.1	KEGG: rru:Rru_A1213 2-oxoglutarate dehydrogenase E1 component
YP_005703694.1	KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II
YP_005703695.1	KEGG: dsa:Desal_0972 hypothetical protein
YP_005703696.1	PFAM: VacJ family lipoprotein; KEGG: dba:Dbac_2657 VacJ family lipoprotein
YP_005703697.1	PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: dde:Dde_3178 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
YP_005703698.1	KEGG: lip:LI0076 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase
YP_005703699.1	PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 extracellular solute-binding protein
YP_005703700.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system
YP_005703701.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2657 binding-protein-dependent transport systems inner membrane component
YP_005703702.1	KEGG: dma:DMR_44460 hypothetical protein
YP_005703703.1	KEGG: rru:Rru_A2969 alanyl-tRNA synthetase related protein; manually curated; SMART: Threonyl/alanyl tRNA synthetase SAD
YP_005703704.1	SMART: Transcription regulator AsnC-type; KEGG: dde:Dde_3179 AsnC family transcriptional regulator
YP_005703705.1	KEGG: dde:Dde_3180 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III
YP_005703706.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dma:DMR_02540 cobalamin biosynthesis protein CbiG
YP_005703707.1	KEGG: dde:Dde_3181 precorrin-3 methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_005703708.1	PFAM: Cytochrome c, class III, conserved region; KEGG: dde:Dde_3182 cytochrome c3
YP_005703709.1	KEGG: dde:Dde_3183 hypothetical protein
YP_005703710.1	KEGG: dde:Dde_3184 hypothetical protein
YP_005703711.1	KEGG: dde:Dde_3185 demethylmenaquinone methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase
YP_005703712.1	PFAM: Protein of unknown function DUF2065; KEGG: dsa:Desal_0760 hypothetical protein
YP_005703713.1	KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase
YP_005703714.1	KEGG: mlu:Mlut_05980 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
YP_005703715.1	KEGG: dde:Dde_3188 hypothetical protein; TIGRFAM: futalosine nucleosidase; PFAM: purine or other phosphorylase family 1
YP_005703716.1	PFAM: Polyprenyl synthetase; KEGG: dde:Dde_3189 trans-hexaprenyltranstransferase
YP_005703717.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; PAS fold domain protein; KEGG: dde:Dde_3190 diguanylate cyclase; SMART: GGDEF domain containing protein; PAS domain containing protein
YP_005703718.1	KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein
YP_005703719.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: dma:DMR_35850 methyl-accepting chemotaxis protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005703720.1	KEGG: dds:Ddes_2010 desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein
YP_005703721.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3194 rubredoxin
YP_005703722.1	PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase
YP_005703723.1	KEGG: dds:Ddes_0020 hypothetical protein
YP_005703724.1	KEGG: dde:Dde_0125 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_005703725.1	PFAM: NLP/P60 protein; KEGG: dds:Ddes_0021 NLP/P60 protein
YP_005703726.1	PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein
YP_005703727.1	KEGG: dde:Dde_0121 hypothetical protein
YP_005703728.1	PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dds:Ddes_1476 pseudouridine synthase
YP_005703729.1	PFAM: glycosyl transferase group 1; KEGG: dsa:Desal_2046 glycosyl transferase group 1
YP_005703730.1	TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding
YP_005703731.1	KEGG: dde:Dde_0062 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related
YP_005703732.1	KEGG: dds:Ddes_1878 putative lipoprotein
YP_005703733.1	PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: lip:LI0914 D-alanyl-D-alanine carboxypeptidase
YP_005703734.1	KEGG: dde:Dde_0065 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV
YP_005703735.1	TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; KEGG: dde:Dde_0066 DNA polymerase III, tau subunit; SMART: AAA ATPase
YP_005703736.1	PFAM: Uncharacterised protein family UPF0133; KEGG: dds:Ddes_2146 hypothetical protein
YP_005703737.1	KEGG: dde:Dde_0068 DNA replication and repair protein RecR; TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR
YP_005703738.1	KEGG: dde:Dde_0075 hypothetical protein
YP_005703739.1	KEGG: dde:Dde_0074 TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease
YP_005703740.1	KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit, putative
YP_005703741.1	SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: dde:Dde_0176 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase
YP_005703742.1	PFAM: Lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain-containing protein
YP_005703743.1	KEGG: dma:DMR_03260 hypothetical protein
YP_005703744.1	PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region
YP_005703745.1	PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein
YP_005703746.1	PFAM: protein of unknown function DUF205; KEGG: dde:Dde_0172 membrane protein
YP_005703747.1	KEGG: dde:Dde_0171 L-threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_005703748.1	KEGG: dde:Dde_0374 rhodanese-like protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein
YP_005703749.1	KEGG: ptr:460375 bassoon (presynaptic cytomatrix protein)
YP_005703750.1	KEGG: dds:Ddes_1565 pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region
YP_005703751.1	KEGG: dds:Ddes_1566 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005703752.1	KEGG: dds:Ddes_1567 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein
YP_005703753.1	KEGG: drt:Dret_1987 hypothetical protein
YP_005703754.1	PFAM: isochorismatase hydrolase; KEGG: gur:Gura_1197 isochorismatase hydrolase
YP_005703755.1	KEGG: dsa:Desal_3086 hypothetical protein
YP_005703756.1	KEGG: dds:Ddes_0853 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005703757.1	KEGG: dds:Ddes_0852 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_005703758.1	PFAM: phosphoglucose isomerase (PGI); KEGG: dde:Dde_3597 glucose-6-phosphate isomerase
YP_005703759.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase
YP_005703760.1	KEGG: dde:Dde_3594 sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein
YP_005703761.1	KEGG: dde:Dde_0387 hypothetical protein
YP_005703762.1	KEGG: dde:Dde_0386 hypothetical protein
YP_005703763.1	PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_0385 flagellar basal body-associated protein, putative
YP_005703764.1	KEGG: dde:Dde_0384 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005703765.1	KEGG: dds:Ddes_0325 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein
YP_005703766.1	KEGG: dde:Dde_0382 flagellar synthesis regulator FleN
YP_005703767.1	TIGRFAM: flagellar biosynthetic protein FlhF; KEGG: dds:Ddes_0327 GTP-binding signal recognition particle SRP54 G-domain protein
YP_005703768.1	KEGG: dde:Dde_0380 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein
YP_005703769.1	KEGG: dde:Dde_0379 flagellar biosynthesis protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter
YP_005703770.1	KEGG: dde:Dde_0378 flagellar biosynthetic protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein
YP_005703771.1	KEGG: dde:Dde_0377 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region
YP_005703772.1	KEGG: dde:Dde_0376 GTP-binding protein HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related
YP_005703773.1	KEGG: dds:Ddes_1568 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region
YP_005703774.1	KEGG: dds:Ddes_0018 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005703775.1	KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related
YP_005703776.1	PFAM: Peptidase M23; KEGG: dde:Dde_0243 M24/M37 family peptidase
YP_005703777.1	PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein
YP_005703778.1	KEGG: dds:Ddes_2161 DNA-directed RNA polymerase, omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6
YP_005703779.1	TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; KEGG: dde:Dde_0248 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein
YP_005703780.1	KEGG: lip:LI0307 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein
YP_005703781.1	KEGG: sfu:Sfum_3923 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein
YP_005703782.1	KEGG: sfu:Sfum_3921 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_005703783.1	KEGG: sfu:Sfum_3922 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein
YP_005703784.1	KEGG: swd:Swoo_0689 hypothetical protein
YP_005703785.1	KEGG: dde:Dde_3553 hypothetical protein
YP_005703786.1	PFAM: HPP family protein; KEGG: dma:DMR_12600 hypothetical membrane protein
YP_005703787.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase, putative
YP_005703788.1	KEGG: dma:DMR_16980 hypothetical protein; PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein
YP_005703789.1	PFAM: Uncharacterised protein family UPF0150; KEGG: ccs:CCNA_03289 hypothetical protein
YP_005703790.1	TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein
YP_005703791.1	TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dds:Ddes_1798 ComEC/Rec2-related protein; SMART: beta-lactamase domain protein
YP_005703792.1	KEGG: dde:Dde_0546 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YP_005703793.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: dde:Dde_0551 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase
YP_005703794.1	KEGG: dde:Dde_0552 hypothetical protein
YP_005703795.1	KEGG: dba:Dbac_3066 fumarate reductase respiratory complex transmembrane subunit
YP_005703796.1	TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: dma:DMR_34280 fumarate reductase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_005703797.1	KEGG: dma:DMR_05780 fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_005703798.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: dma:DMR_34300 L-tartrate dehydratase alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region
YP_005703799.1	KEGG: dma:DMR_34310 L-tartrate dehydratase beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region
YP_005703800.1	KEGG: dde:Dde_3063 hypothetical protein
YP_005703801.1	KEGG: dde:Dde_1333 hypothetical protein
YP_005703802.1	KEGG: dde:Dde_0554 hypothetical protein
YP_005703803.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dba:Dbac_1221 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005703804.1	KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II
YP_005703805.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I
YP_005703806.1	KEGG: dde:Dde_3772 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_005703807.1	KEGG: dde:Dde_3773 hypothetical protein
YP_005703808.1	KEGG: dds:Ddes_0888 protein of unknown function UPF0153
YP_005703809.1	KEGG: dde:Dde_3775 ferredoxin I
YP_005703810.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3776 PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF domain protein
YP_005703811.1	TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: dde:Dde_3777 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
YP_005703812.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dma:DMR_44920 putative ABC transporter ATP-binding protein; SMART: AAA ATPase
YP_005703813.1	KEGG: dde:Dde_0060 hypothetical protein
YP_005703814.1	PFAM: ADP-ribosylation/Crystallin J1; KEGG: dde:Dde_0059 ADP-ribosylglycohydrolase family protein
YP_005703815.1	KEGG: pno:SNOG_00683 hypothetical protein
YP_005703816.1	KEGG: dde:Dde_0096 hypothetical protein
YP_005703817.1	KEGG: dma:DMR_20020 L-lactate permease; TIGRFAM: L-lactate transport; PFAM: L-lactate permease
YP_005703818.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein
YP_005703819.1	KEGG: dma:DMR_46020 hypothetical protein
YP_005703820.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: dma:DMR_46030 glutamate synthase large subunit
YP_005703821.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase alpha subunit domain protein; KEGG: dma:DMR_46040 nucleotide-disulphide oxidoreductase family protein
YP_005703822.1	PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: hoh:Hoch_5290 thiamine pyrophosphate protein domain protein TPP-binding protein
YP_005703823.1	PFAM: Aldehyde Dehydrogenase; KEGG: cps:CPS_3359 aldehyde dehydrogenase family protein
YP_005703824.1	KEGG: dde:Dde_1696 hemolysin III family channel protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein
YP_005703825.1	KEGG: dsa:Desal_3329 hypothetical protein
YP_005703826.1	KEGG: dds:Ddes_1135 aromatic amino acid transporter; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease
YP_005703827.1	KEGG: pag:PLES_47301 putative universal stress protein
YP_005703828.1	PFAM: protein of unknown function DUF81; KEGG: dba:Dbac_2673 protein of unknown function DUF81
YP_005703829.1	KEGG: dba:Dbac_2672 hypothetical protein
YP_005703830.1	KEGG: dba:Dbac_2670 hypothetical protein
YP_005703831.1	KEGG: dba:Dbac_2669 hypothetical protein
YP_005703832.1	KEGG: dba:Dbac_2668 response regulator receiver protein; PFAM: response regulator receiver; AAA ATPase central domain protein; SMART: response regulator receiver; AAA ATPase
YP_005703833.1	KEGG: dba:Dbac_2667 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein
YP_005703834.1	KEGG: dba:Dbac_2666 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005703835.1	KEGG: dde:Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein
YP_005703836.1	KEGG: dde:Dde_0151 metallo-beta-lactamase family protein
YP_005703837.1	PFAM: Excinuclease ABC C subunit domain protein; KEGG: pnu:Pnuc_0446 excinuclease ABC subunit C
YP_005703838.1	KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_005703839.1	KEGG: tmz:Tmz1t_4048 heavy metal sensor signal transduction histidine kinase
YP_005703840.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aac:Aaci_0821 transcriptional regulator, LysR family
YP_005703841.1	KEGG: tcr:506833.60 UV excision repair RAD23-like protein
YP_005703842.1	PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase
YP_005703843.1	PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_0057 dihydroorotate oxidase B, electron transfer subunit
YP_005703844.1	KEGG: dde:Dde_0056 dihydroorotate oxidase B, catalytic subunit; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase
YP_005703845.1	manually curated
YP_005703846.1	KEGG: dde:Dde_0054 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase
YP_005703847.1	KEGG: ypp:YPDSF_1002 phage-related membrane protein
YP_005703848.1	PFAM: Protein of unknown function DUF2318, membrane; KEGG: dma:DMR_19610 hypothetical protein
YP_005703849.1	PFAM: protein of unknown function DUF214; KEGG: dds:Ddes_2105 protein of unknown function DUF214
YP_005703850.1	KEGG: dds:Ddes_2106 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703851.1	PFAM: small multidrug resistance protein; KEGG: dde:Dde_2405 SMR family multidrug efflux pump
YP_005703852.1	PFAM: small multidrug resistance protein; KEGG: dds:Ddes_1812 small multidrug resistance protein
YP_005703853.1	manually curated; KEGG: blj:BLD_0467 superfamily II RNA helicase
YP_005703854.1	KEGG: dma:DMR_28320 hypothetical protein
YP_005703855.1	KEGG: dds:Ddes_1752 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase
YP_005703856.1	KEGG: eba:ebA616 hypothetical protein
YP_005703857.1	KEGG: mxa:MXAN_0172 sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_005703858.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: fjo:Fjoh_1970 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_005703859.1	PFAM: Osmosensitive K channel His kinase sensor; UspA domain-containing protein; KEGG: mxa:MXAN_0167 osmosensitive K+ channel histidine kinase sensor subunit
YP_005703860.1	TIGRFAM: potassium-transporting ATPase, C subunit; KEGG: mlo:mll3129 potassium-transporting atpase C chain, KdpC; PFAM: K transporting ATPase KdpC subunit
YP_005703861.1	KEGG: aba:Acid345_0511 potassium-translocating P-type ATPase, B subunit; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase
YP_005703862.1	TIGRFAM: potassium-transporting ATPase, A subunit; KEGG: mxa:MXAN_0164 potassium-transporting ATPase subunit A; PFAM: K transporting ATPase A subunit
YP_005703863.1	PFAM: TadE family protein; KEGG: dma:DMR_14170 hypothetical protein
YP_005703864.1	PFAM: TadE family protein; KEGG: xce:Xcel_1028 TadE family protein
YP_005703865.1	PFAM: Protein of unknown function DUF2134, membrane; KEGG: dma:DMR_14150 hypothetical protein
YP_005703866.1	KEGG: cyt:cce_1889 hypothetical protein
YP_005703867.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit
YP_005703868.1	PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative
YP_005703869.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_0044 2-ketoisovalerate ferredoxin reductase
YP_005703870.1	KEGG: dsa:Desal_3826 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_005703871.1	KEGG: dde:Dde_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein
YP_005703872.1	KEGG: lip:LI0583 hypothetical protein
YP_005703873.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: dde:Dde_0039 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein
YP_005703874.1	KEGG: dde:Dde_0038 hypothetical protein
YP_005703875.1	KEGG: dsa:Desal_3833 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein
YP_005703876.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0033 NAD-dependent epimerase/dehydratase family protein
YP_005703877.1	KEGG: pmx:PERMA_1597 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_005703878.1	PFAM: UspA domain-containing protein; KEGG: sse:Ssed_1391 universal stress protein, UspA
YP_005703879.1	PFAM: CBS domain containing protein; MgtE integral membrane region; KEGG: psl:Psta_1776 CBS domain containing protein
YP_005703880.1	KEGG: dsa:Desal_0437 nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB
YP_005703881.1	KEGG: dsa:Desal_0438 nitrogenase; PFAM: oxidoreductase/nitrogenase component 1
YP_005703882.1	KEGG: dma:DMR_17520 nitrogenase MoFe cofactor biosynthesis protein; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1
YP_005703883.1	KEGG: sfu:Sfum_1014 ferredoxin, 2fe-2s
YP_005703884.1	TIGRFAM: nitrogenase molybdenum-iron protein beta chain; KEGG: cph:Cpha266_0740 nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1
YP_005703885.1	KEGG: cpb:Cphamn1_1754 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1
YP_005703886.1	PFAM: nitrogen regulatory protein P-II; KEGG: plt:Plut_1530 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_005703887.1	PFAM: nitrogen regulatory protein P-II; KEGG: cts:Ctha_1034 nitrogen regulatory protein P-II
YP_005703888.1	TIGRFAM: nitrogenase iron protein; KEGG: dba:Dbac_0834 nitrogenase iron protein; PFAM: NifH/frxC-family protein
YP_005703889.1	PFAM: pyruvate carboxyltransferase; KEGG: dsa:Desal_0448 pyruvate carboxyltransferase
YP_005703890.1	KEGG: cfa:489657 spastic paraplegia 7 (pure and complicated autosomal recessive)
YP_005703891.1	KEGG: dma:DMR_14640 modification methylase
YP_005703892.1	KEGG: dma:DMR_14630 type II restriction enzyme; PFAM: restriction endonuclease XhoI
YP_005703893.1	KEGG: dde:Dde_0824 CAAX amino terminal protease family protein; TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein
YP_005703894.1	PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0825 hypothetical protein
YP_005703895.1	KEGG: dde:Dde_0826 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703896.1	PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative
YP_005703897.1	KEGG: dde:Dde_0820 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; response regulator receiver
YP_005703898.1	KEGG: afu:AF2138 phosphoserine phosphatase (SerB)
YP_005703899.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein
YP_005703900.1	PFAM: protein of unknown function DUF1555; KEGG: llk:LLKF_1729 cell surface protein with WxL domain
YP_005703901.1	PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein
YP_005703902.1	PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein
YP_005703903.1	KEGG: tgu:100220127 hypothetical protein LOC100220127
YP_005703904.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_0822 hypothetical protein
YP_005703905.1	KEGG: dde:Dde_0821 hypothetical protein
YP_005703906.1	KEGG: dde:Dde_0828 TPR repeat-containing protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein
YP_005703907.1	KEGG: gme:Gmet_2031 sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; sugar transferase, PEP-CTERM system associated; PFAM: sugar transferase
YP_005703908.1	KEGG: dde:Dde_0830 capsular polysaccharide transport protein; TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; Soluble ligand binding domain
YP_005703909.1	KEGG: dde:Dde_0831 chain length determinant family protein; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein
YP_005703910.1	KEGG: dde:Dde_0832 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family
YP_005703911.1	KEGG: dde:Dde_0833 ATPase; TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase
YP_005703912.1	TIGRFAM: PEP-CTERM system associated protein; KEGG: dde:Dde_0834 putative lipoprotein
YP_005703913.1	KEGG: dba:Dbac_2217 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase
YP_005703914.1	TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein
YP_005703915.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dba:Dbac_2215 DegT/DnrJ/EryC1/StrS aminotransferase
YP_005703916.1	PFAM: glycosyl transferase family 2; KEGG: dba:Dbac_2214 glycosyl transferase family 2
YP_005703917.1	KEGG: swi:Swit_2495 hypothetical protein
YP_005703918.1	PFAM: O-antigen polymerase; KEGG: dba:Dbac_2212 O-antigen polymerase
YP_005703919.1	PFAM: polysaccharide biosynthesis protein; KEGG: dba:Dbac_2211 polysaccharide biosynthesis protein
YP_005703920.1	PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2210 glycosyl transferase, group 1
YP_005703921.1	PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2209 glycosyl transferase group 1
YP_005703922.1	KEGG: dba:Dbac_2208 acetyltransferase
YP_005703924.1	KEGG: dba:Dbac_2207 transferase hexapeptide repeat containing protein
YP_005703925.1	PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2206 glycosyl transferase group 1
YP_005703926.1	KEGG: dde:Dde_0847 hypothetical protein; TIGRFAM: eight transmembrane protein EpsH; PFAM: Exosortase EpsH-related
YP_005703927.1	TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein
YP_005703928.1	TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: dde:Dde_0850 two component Fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase
YP_005703929.1	KEGG: dba:Dbac_2203 glycosyl hydrolase BNR repeat-containing protein
YP_005703930.1	KEGG: dba:Dbac_2200 ATP-grasp protein-like protein
YP_005703931.1	KEGG: pkaA; serine/threonine protein kinase
YP_005703932.1	PFAM: protein of unknown function DUF1624; KEGG: mex:Mext_1201 hypothetical protein
YP_005703933.1	PFAM: protein of unknown function DUF201; KEGG: dba:Dbac_2200 ATP-grasp protein-like protein
YP_005703934.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent
YP_005703935.1	PFAM: Methicillin resistance protein; KEGG: sfu:Sfum_0970 hypothetical protein
YP_005703936.1	KEGG: dba:Dbac_2205 coenzyme F390 synthetase-like protein
YP_005703937.1	TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein
YP_005703938.1	PFAM: Patatin; KEGG: dde:Dde_0819 alpha-beta hydrolase superfamily esterase
YP_005703939.1	KEGG: fps:FP1263 hypothetical protein
YP_005703940.1	KEGG: dma:DMR_26840 hypothetical membrane protein
YP_005703941.1	PFAM: Methyltransferase type 12; KEGG: lic:LIC11297 cyclopropane-fatty-acyl-phospholipid synthase/methyltransferase
YP_005703942.1	PFAM: GtrA family protein; glycosyl transferase family 2; KEGG: sus:Acid_0467 glycosyl transferase family protein
YP_005703943.1	PFAM: Methyltransferase type 11; KEGG: cmi:CMM_1603 putative pyruvyltransferase
YP_005703944.1	PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: sus:Acid_0615 glycosyl transferase family protein
YP_005703945.1	PFAM: glycosyl transferase group 1; KEGG: dma:DMR_14080 putative glycosyltransferase
YP_005703946.1	KEGG: cag:Cagg_1962 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II
YP_005703947.1	PFAM: sulfotransferase; KEGG: pmi:PMT9312_1164 sulfotransferase family protein
YP_005703948.1	KEGG: lic:LIC12165 putative molybdenum cofactor biosynthesis protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_005703949.1	KEGG: dma:DMR_26190 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_005703950.1	KEGG: rca:Rcas_3650 ABC-2 type transporter; manually curated; PFAM: ABC-2 type transporter
YP_005703952.1	TIGRFAM: adenylylsulfate kinase; KEGG: dsa:Desal_3653 adenylylsulfate kinase; PFAM: adenylylsulfate kinase
YP_005703953.1	PFAM: glycosyl transferase family 2; KEGG: dds:Ddes_0400 glycosyl transferase family 2
YP_005703954.1	PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: lip:LIC085 glycosyl transferase
YP_005703955.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lip:LIC001 integrase/recombinase
YP_005703956.1	KEGG: tko:TK0888 SpoVT/AbrB family transcription regulator
YP_005703957.1	SMART: AAA ATPase; KEGG: stm:STM4489 putative DNA helicases
YP_005703958.1	KEGG: dma:DMR_24840 response regulator receiver protein; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region
YP_005703959.1	KEGG: dma:DMR_24850 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_005703960.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dba:Dbac_0052 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_005703961.1	PFAM: protein of unknown function DUF534; KEGG: dma:DMR_24870 hypothetical protein
YP_005703962.1	PFAM: protein of unknown function DUF1555; KEGG: nmu:Nmul_A1415 hypothetical protein
YP_005703963.1	PFAM: protein of unknown function DUF554; KEGG: dsa:Desal_0492 protein of unknown function DUF554
YP_005703964.1	KEGG: dma:DMR_34220 catalase; PFAM: Catalase related subgroup; Catalase domain protein
YP_005703965.1	KEGG: dde:Dde_1347 hypothetical protein
YP_005703966.1	KEGG: dba:Dbac_2674 chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter
YP_005703967.1	PFAM: Chromate resistance exported protein; KEGG: dba:Dbac_2675 ChrB protein
YP_005703968.1	KEGG: dba:Dbac_2676 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein
YP_005703969.1	KEGG: dba:Dbac_2677 hypothetical protein
YP_005703970.1	PFAM: major facilitator superfamily MFS_1; KEGG: dma:DMR_37230 major facilitator superfamily protein
YP_005703971.1	PFAM: Radical SAM domain protein; KEGG: dsa:Desal_3155 radical SAM domain protein
YP_005703972.1	PFAM: 3-dehydroquinate synthase; KEGG: scl:sce5394 glycerol-1-phosphate dehydrogenase (NAD(P)(+))
YP_005703973.1	KEGG: lip:LI1150 putative regulator; PFAM: Stage II sporulation protein E; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein
YP_005703974.1	KEGG: bta:531974 neuron navigator 1
YP_005703975.1	KEGG: lip:LI1151 transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase
YP_005703976.1	KEGG: lip:LI0551 translocation protein in type III secretion; TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter
YP_005703977.1	KEGG: lip:LI0550 type III secretion component protein SctT; TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein
YP_005703978.1	KEGG: lip:LI0549 translocation protein in type III secretion; TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3
YP_005703979.1	KEGG: lip:LI0548 putative type III secretion pore protein; TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein
YP_005703980.1	KEGG: lip:LI0547 hypothetical protein
YP_005703981.1	KEGG: lip:LI1152 hypothetical protein
YP_005703982.1	TIGRFAM: type III secretion chaperone SycN; KEGG: lip:LI0546 hypothetical protein
YP_005703983.1	KEGG: lip:LI1153 putative outer protein N; TIGRFAM: type III secretion regulator YopN/LcrE/InvE/MxiC; type III secretion effector delivery regulator, TyeA family; PFAM: TyeA domain-containing protein; Hypersensitivity response secretion HrpJ domain protein
YP_005703984.1	KEGG: lip:LI0545 hypothetical protein
YP_005703985.1	KEGG: lip:LI1154 hypothetical protein
YP_005703986.1	KEGG: lip:LI1157 regulatory protein PcrH; TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3 repeat-containing protein
YP_005703987.1	KEGG: lip:LI1158 hypothetical protein
YP_005703988.1	PFAM: YopD family protein; KEGG: asa:ASA_P5G064 AopD protein
YP_005703989.1	PFAM: Tir chaperone family protein; KEGG: bpe:BP2236 hypothetical protein
YP_005703990.1	KEGG: lip:LI1160 putative type III secretion protein YscC; TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein
YP_005703991.1	TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 hypothetical protein
YP_005703992.1	KEGG: hch:HCH_05129 hypothetical protein
YP_005703993.1	KEGG: eok:G2583_4407 type III secretion apparatus needle protein; TIGRFAM: type III secretion system needle protein; PFAM: Type III secretion, needle-protein like
YP_005703994.1	KEGG: lip:LI0544 hypothetical protein
YP_005703995.1	KEGG: aoe:Clos_0100 triple helix repeat-containing collagen
YP_005703996.1	KEGG: lip:LI1163 putative type III secretion protein; TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein
YP_005703997.1	KEGG: lip:LI0542 hypothetical protein
YP_005703998.1	KEGG: lip:LI0541 type III secretion system protein; TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE
YP_005703999.1	TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: lip:LI0540 type III secretion system ATPase; SMART: AAA ATPase
YP_005704000.1	PFAM: type III secretion YscO fmaily protein; KEGG: lip:LI0539 hypothetical protein
YP_005704001.1	TIGRFAM: type III secretion system needle length determinant; KEGG: hch:HCH_05109 hypothetical protein
YP_005704002.1	KEGG: lip:LI1166 putative translocation protein in type III secretion; TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein
YP_005704003.1	KEGG: lip:LI0537 type III secretion system protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein
YP_005704004.1	KEGG: lip:LI1167 anti-anti-sigma factor; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS
YP_005704005.1	KEGG: lip:LI1168 sigma regulatory factor-histidine kinase
YP_005704006.1	PFAM: Lytic transglycosylase catalytic; KEGG: lip:LI1169 putative transglycosylase
YP_005704007.1	PFAM: Tir chaperone family protein; KEGG: eta:ETA_05380 potential ORFB-specific chaperone, encodes a homolog of virulence/avirulence effector proteins secreted via the type III pathway
YP_005704008.1	KEGG: ang:An07g05660 hypothetical protein
YP_005704009.1	TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; metal dependent phophohydrolase; PFAM: DEAD/DEAH box helicase domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: metal dependent phosphohydrolase; SMART: DEAD-like helicase ; metal-dependent phosphohydrolase HD region
YP_005704010.1	KEGG: avn:Avin_31620 CRISPR-associated protein Cas5d; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5
YP_005704011.1	KEGG: dma:DMR_14370 hypothetical protein; TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133
YP_005704012.1	KEGG: avn:Avin_31600 CRISPR-associated protein Csd2; TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801
YP_005704013.1	TIGRFAM: CRISPR-associated protein Cas4; KEGG: dma:DMR_14390 hypothetical protein
YP_005704014.1	KEGG: sat:SYN_02473 putative cytoplasmic protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48
YP_005704015.1	KEGG: dma:DMR_14410 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2
YP_005704016.1	PFAM: zinc/iron permease; KEGG: dma:DMR_11420 zinc transporter ZupT
YP_005704017.1	KEGG: geo:Geob_1277 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR
YP_005704018.1	KEGG: gur:Gura_0744 integral membrane sensor signal transduction histidine kinase; PFAM: Diverse 7TM receptor transmembrane region; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_005704019.1	KEGG: bav:BAV1572 autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; SMART: Autotransporter beta- domain protein
YP_005704020.1	TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; KEGG: dsa:Desal_0518 transcriptional regulator, NifA, fis family; SMART: GAF domain protein; AAA ATPase
YP_005704021.1	KEGG: met:M446_6067 hypothetical protein
YP_005704022.1	PFAM: Tir chaperone family protein; KEGG: mmi:MMAR_1484 PPE family protein
YP_005704023.1	KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component
YP_005704024.1	PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_03642 major facilitator superfamily protein
YP_005704025.1	KEGG: pin:Ping_3332 hypothetical protein
YP_005704026.1	KEGG: dsa:Desal_0904 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_005704027.1	KEGG: dba:Dbac_0227 transcriptional regulator, XRE family
YP_005704028.1	PFAM: HipA domain protein; KEGG: dba:Dbac_0226 HipA domain protein
YP_005704029.1	KEGG: dma:DMR_p1_00010 putative chromosome partitioning protein ParA
YP_005704030.1	KEGG: sce:YIR019C GPI-anchored cell surface glycoprotein (flocculin) required for pseudohyphal formation, invasive growth, flocculation, and biofilms; transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p)