-- dump date 20140619_064906 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_005700810.1 387151874 12868741 291..1079 1 NC_017310.1 KEGG: dde:Dde_0031 chromosome segregation ATPase; chromosome segregation ATPase 1079 12868741 Deval_0001 Desulfovibrio vulgaris RCH1 chromosome segregation ATPase YP_005700810.1 291 D 573059 CDS YP_005700811.1 387151875 12868743 complement(1084..1503) 1 NC_017310.1 KEGG: dde:Dde_0030 hypothetical protein; hypothetical protein 1503 12868743 Deval_0002 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700811.1 1084 R 573059 CDS YP_005700812.1 387151876 12868745 1580..2494 1 NC_017310.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dde:Dde_0029 chromosome segregation DNA-binding protein; SMART: ParB domain protein nuclease; parB-like partition protein 2494 12868745 Deval_0003 Desulfovibrio vulgaris RCH1 parB-like partition protein YP_005700812.1 1580 D 573059 CDS YP_005700813.1 387151877 12868747 2505..3530 1 NC_017310.1 PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7-phosphate 1-kinase; PfkB domain-containing protein 3530 12868747 Deval_0004 Desulfovibrio vulgaris RCH1 PfkB domain-containing protein YP_005700813.1 2505 D 573059 CDS YP_005700814.1 387151878 12868749 3612..3992 1 NC_017310.1 PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: dsa:Desal_0011 hypothetical protein; DnaJ-like, subfamily C, containing protein 3992 12868749 Deval_0005 Desulfovibrio vulgaris RCH1 DnaJ-like, subfamily C, containing protein YP_005700814.1 3612 D 573059 CDS YP_005700815.1 387151879 12868779 complement(4089..5612) 1 NC_017310.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dde:Dde_0017 sun protein; Fmu (Sun) domain-containing protein 5612 12868779 Deval_0006 Desulfovibrio vulgaris RCH1 Fmu (Sun) domain-containing protein YP_005700815.1 4089 R 573059 CDS YP_005700816.1 387151880 12867436 complement(5844..6767) 1 NC_017310.1 PFAM: protein of unknown function DUF116; KEGG: drt:Dret_0017 protein of unknown function DUF116; hypothetical protein 6767 12867436 Deval_0007 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700816.1 5844 R 573059 CDS YP_005700817.1 387151881 12867446 complement(6888..7880) 1 NC_017310.1 KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 7880 12867446 Deval_0008 Desulfovibrio vulgaris RCH1 methionyl-tRNA formyltransferase YP_005700817.1 6888 R 573059 CDS YP_005700818.1 387151882 12868677 complement(7853..8368) 1 NC_017310.1 KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 8368 12868677 Deval_0009 Desulfovibrio vulgaris RCH1 peptide deformylase YP_005700818.1 7853 R 573059 CDS YP_005700819.1 387151883 12866935 complement(8671..10503) 1 NC_017310.1 KEGG: dde:Dde_0012 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; aspartyl-tRNA synthetase 10503 12866935 Deval_0010 Desulfovibrio vulgaris RCH1 aspartyl-tRNA synthetase YP_005700819.1 8671 R 573059 CDS YP_005700820.1 387151884 12866936 complement(10522..11775) 1 NC_017310.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: dde:Dde_0011 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 11775 12866936 Deval_0011 Desulfovibrio vulgaris RCH1 histidyl-tRNA synthetase YP_005700820.1 10522 R 573059 CDS YP_005700821.1 387151885 12866937 complement(11896..12684) 1 NC_017310.1 PFAM: Methyltransferase type 11; KEGG: dde:Dde_0009 hypothetical protein; type 11 methyltransferase 12684 12866937 Deval_0012 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005700821.1 11896 R 573059 CDS YP_005700822.1 387151886 12866938 complement(13191..15548) 1 NC_017310.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: dsa:Desal_0813 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 15548 12866938 Deval_0013 Desulfovibrio vulgaris RCH1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_005700822.1 13191 R 573059 CDS YP_005700823.1 387151887 12866939 complement(16085..17749) 1 NC_017310.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: dde:Dde_0116 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 17749 12866939 Deval_0014 Desulfovibrio vulgaris RCH1 dihydroxy-acid dehydratase YP_005700823.1 16085 R 573059 CDS YP_005700824.1 387151888 12866940 complement(17781..18656) 1 NC_017310.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX; hypothetical protein 18656 12866940 Deval_0015 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700824.1 17781 R 573059 CDS YP_005700825.1 387151889 12866941 complement(18656..19372) 1 NC_017310.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; SMART: AAA ATPase; cell division ATP-binding protein FtsE 19372 12866941 Deval_0016 Desulfovibrio vulgaris RCH1 cell division ATP-binding protein FtsE YP_005700825.1 18656 R 573059 CDS YP_005700826.1 387151890 12866942 complement(19572..21152) 1 NC_017310.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: amu:Amuc_0864 sulfatase; sulfatase 21152 12866942 Deval_0017 Desulfovibrio vulgaris RCH1 sulfatase YP_005700826.1 19572 R 573059 CDS YP_005700827.1 387151891 12866943 complement(21152..21526) 1 NC_017310.1 PFAM: diacylglycerol kinase; KEGG: vsa:VSAL_I0531 diacylglycerol kinase; diacylglycerol kinase 21526 12866943 Deval_0018 Desulfovibrio vulgaris RCH1 diacylglycerol kinase YP_005700827.1 21152 R 573059 CDS YP_005700828.1 387151892 12866944 complement(21629..22090) 1 NC_017310.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dds:Ddes_0203 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 22090 12866944 Deval_0019 Desulfovibrio vulgaris RCH1 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_005700828.1 21629 R 573059 CDS YP_005700829.1 387151893 12866945 22392..22622 1 NC_017310.1 KEGG: bgl:bglu_2g21630 propionate catabolism operon regulatory protein; hypothetical protein 22622 12866945 Deval_0020 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700829.1 22392 D 573059 CDS YP_005700830.1 387151894 12866946 complement(22571..24835) 1 NC_017310.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: dde:Dde_0113 ribonucleotide-diphosphate reductase subunit alpha; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase 24835 12866946 Deval_0021 Desulfovibrio vulgaris RCH1 ribonucleoside-diphosphate reductase YP_005700830.1 22571 R 573059 CDS YP_005700831.1 387151895 12866947 complement(25444..26823) 1 NC_017310.1 KEGG: dde:Dde_0109 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 26823 12866947 Deval_0022 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005700831.1 25444 R 573059 CDS YP_005700832.1 387151896 12866948 complement(26825..28864) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0110 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 28864 12866948 Deval_0023 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_005700832.1 26825 R 573059 CDS YP_005700833.1 387151897 12866949 29456..29977 1 NC_017310.1 KEGG: dde:Dde_0111 zinc resistance-associated protein; zinc resistance-associated protein 29977 12866949 Deval_0024 Desulfovibrio vulgaris RCH1 zinc resistance-associated protein YP_005700833.1 29456 D 573059 CDS YP_005700834.1 387151898 12866950 complement(30542..31897) 1 NC_017310.1 PFAM: permease; KEGG: dde:Dde_0132 permease, putative; permease 31897 12866950 Deval_0025 Desulfovibrio vulgaris RCH1 permease YP_005700834.1 30542 R 573059 CDS YP_005700835.1 387151899 12866951 complement(32596..33609) 1 NC_017310.1 KEGG: dds:Ddes_0311 hypothetical protein; hypothetical protein 33609 12866951 Deval_0026 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700835.1 32596 R 573059 CDS YP_005700836.1 387151900 12866952 complement(33777..34631) 1 NC_017310.1 PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_0107 putative lipoprotein; peptidase M48 Ste24p 34631 12866952 Deval_0027 Desulfovibrio vulgaris RCH1 peptidase M48 Ste24p YP_005700836.1 33777 R 573059 CDS YP_005700837.1 387151901 12866953 34737..37019 1 NC_017310.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: dde:Dde_0106 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase I 37019 12866953 Deval_0028 Desulfovibrio vulgaris RCH1 DNA topoisomerase I YP_005700837.1 34737 D 573059 CDS YP_005700838.1 387151902 12866954 complement(37255..38109) 1 NC_017310.1 KEGG: dma:DMR_35470 hypothetical protein; hypothetical protein 38109 12866954 Deval_0029 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700838.1 37255 R 573059 CDS YP_005700839.1 387151903 12866955 38568..39911 1 NC_017310.1 KEGG: dde:Dde_0104 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type I 39911 12866955 Deval_0030 Desulfovibrio vulgaris RCH1 glutamine synthetase, type I YP_005700839.1 38568 D 573059 CDS YP_005700840.1 387151904 12866956 complement(40298..40438) 1 NC_017310.1 hypothetical protein 40438 12866956 Deval_0031 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700840.1 40298 R 573059 CDS YP_005700841.1 387151905 12866957 complement(40498..41808) 1 NC_017310.1 PFAM: Peptidase M23; KEGG: dds:Ddes_0002 peptidase M23; peptidase M23 41808 12866957 Deval_0032 Desulfovibrio vulgaris RCH1 peptidase M23 YP_005700841.1 40498 R 573059 CDS YP_005700842.1 387151906 12866958 42103..43416 1 NC_017310.1 KEGG: dde:Dde_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator DnaA domain-containing protein 43416 12866958 Deval_0033 Desulfovibrio vulgaris RCH1 chromosomal replication initiator DnaA domain-containing protein YP_005700842.1 42103 D 573059 CDS YP_005700843.1 387151907 12866959 43562..44716 1 NC_017310.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 44716 12866959 Deval_0034 Desulfovibrio vulgaris RCH1 DNA polymerase III subunit beta YP_005700843.1 43562 D 573059 CDS YP_005700844.1 387151908 12866960 44718..47114 1 NC_017310.1 TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; KEGG: dds:Ddes_0005 DNA gyrase, B subunit; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 47114 12866960 Deval_0035 Desulfovibrio vulgaris RCH1 DNA gyrase subunit B YP_005700844.1 44718 D 573059 CDS YP_005700845.1 387151909 12866961 47271..49784 1 NC_017310.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: dds:Ddes_0006 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 49784 12866961 Deval_0036 Desulfovibrio vulgaris RCH1 DNA gyrase subunit A YP_005700845.1 47271 D 573059 CDS YP_005700846.1 387151910 12866962 49787..50572 1 NC_017310.1 KEGG: dds:Ddes_0007 putative lipoprotein; putative lipoprotein 50572 12866962 Deval_0037 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005700846.1 49787 D 573059 CDS YP_005700847.1 387151911 12866963 complement(50865..51470) 1 NC_017310.1 PFAM: UspA domain-containing protein; KEGG: dde:Dde_0098 universal stress protein; UspA domain-containing protein 51470 12866963 Deval_0038 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005700847.1 50865 R 573059 CDS YP_005700848.1 387151912 12866964 complement(51504..52889) 1 NC_017310.1 KEGG: dde:Dde_0099 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; asparaginyl-tRNA synthetase 52889 12866964 Deval_0039 Desulfovibrio vulgaris RCH1 asparaginyl-tRNA synthetase YP_005700848.1 51504 R 573059 CDS YP_005700849.1 387151913 12866965 complement(53633..54913) 1 NC_017310.1 KEGG: dat:HRM2_48190 putative TRAP-type C4-dicarboxylate transport system, large permease component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 54913 12866965 Deval_0040 Desulfovibrio vulgaris RCH1 TRAP dicarboxylate transporter subunit DctM YP_005700849.1 53633 R 573059 CDS YP_005700850.1 387151914 12866966 complement(54910..55476) 1 NC_017310.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dal:Dalk_0472 tripartite ATP-independent periplasmic transporter DctQ component; tripartite AtP-independent periplasmic transporter subunit DctQ 55476 12866966 Deval_0041 Desulfovibrio vulgaris RCH1 tripartite AtP-independent periplasmic transporter subunit DctQ YP_005700850.1 54910 R 573059 CDS YP_005700851.1 387151915 12866967 complement(55538..56563) 1 NC_017310.1 KEGG: dal:Dalk_0473 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP 56563 12866967 Deval_0042 Desulfovibrio vulgaris RCH1 TRAP dicarboxylate transporter subunit DctP YP_005700851.1 55538 R 573059 CDS YP_005700852.1 387151916 12866968 57051..58253 1 NC_017310.1 KEGG: dde:Dde_3779 MerR family transcriptional regulator; MerR family transcriptional regulator 58253 12866968 Deval_0043 Desulfovibrio vulgaris RCH1 MerR family transcriptional regulator YP_005700852.1 57051 D 573059 CDS YP_005700853.1 387151917 12866969 58414..60222 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3782 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; multi-sensor signal transduction histidine kinase 60222 12866969 Deval_0044 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005700853.1 58414 D 573059 CDS YP_005700854.1 387151918 12866970 complement(60422..60640) 1 NC_017310.1 KEGG: dma:DMR_20740 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor IF-1 60640 12866970 Deval_0045 Desulfovibrio vulgaris RCH1 translation initiation factor IF-1 YP_005700854.1 60422 R 573059 CDS YP_005700855.1 387151919 12866971 complement(60756..61547) 1 NC_017310.1 KEGG: dde:Dde_3768 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 61547 12866971 Deval_0046 Desulfovibrio vulgaris RCH1 prolipoprotein diacylglyceryl transferase YP_005700855.1 60756 R 573059 CDS YP_005700856.1 387151920 12866973 62088..64337 1 NC_017310.1 KEGG: dde:Dde_2734 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 64337 12866973 Deval_0047 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005700856.1 62088 D 573059 CDS YP_005700857.1 387151921 12866974 complement(64454..65062) 1 NC_017310.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3337 nigerythrin; rubrerythrin 65062 12866974 Deval_0048 Desulfovibrio vulgaris RCH1 rubrerythrin YP_005700857.1 64454 R 573059 CDS YP_005700858.1 387151922 12866975 complement(65564..66541) 1 NC_017310.1 KEGG: cyp:PCC8801_2037 hypothetical protein; hypothetical protein 66541 12866975 Deval_0049 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700858.1 65564 R 573059 CDS YP_005700859.1 387151923 12866976 complement(66809..69259) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; KEGG: cwo:Cwoe_0137 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; diguanylate cyclase/phosphodiesterase with extracellular sensor 69259 12866976 Deval_0050 Desulfovibrio vulgaris RCH1 diguanylate cyclase/phosphodiesterase with extracellular sensor YP_005700859.1 66809 R 573059 CDS YP_005700860.1 387151924 12866977 69420..69590 1 NC_017310.1 KEGG: dsa:Desal_1571 hypothetical protein; hypothetical protein 69590 12866977 Deval_0051 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700860.1 69420 D 573059 CDS YP_005700861.1 387151925 12866978 complement(69666..71825) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dsa:Desal_2892 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 71825 12866978 Deval_0052 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_005700861.1 69666 R 573059 CDS YP_005700862.1 387151926 12866980 72439..73011 1 NC_017310.1 KEGG: sdn:Sden_0155 hypothetical protein; hypothetical protein 73011 12866980 Deval_0053 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700862.1 72439 D 573059 CDS YP_005700863.1 387151927 12866981 complement(73230..74654) 1 NC_017310.1 KEGG: dde:Dde_1483 hypothetical protein; hypothetical protein 74654 12866981 Deval_0054 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700863.1 73230 R 573059 CDS YP_005700864.1 387151928 12866982 75184..75561 1 NC_017310.1 KEGG: asa:ASA_3792 chaperone CsaA; TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain-containing protein; export-related chaperone CsaA 75561 12866982 Deval_0055 Desulfovibrio vulgaris RCH1 export-related chaperone CsaA YP_005700864.1 75184 D 573059 CDS YP_005700865.1 387151929 12866983 75938..77650 1 NC_017310.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_0092 hydantoinase/oxoprolinase family protein; hydantoinase/oxoprolinase 77650 12866983 Deval_0056 Desulfovibrio vulgaris RCH1 hydantoinase/oxoprolinase YP_005700865.1 75938 D 573059 CDS YP_005700866.1 387151930 12866984 77724..78128 1 NC_017310.1 KEGG: dde:Dde_0093 hypothetical protein; hypothetical protein 78128 12866984 Deval_0057 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700866.1 77724 D 573059 CDS YP_005700867.1 387151931 12866985 complement(78434..79936) 1 NC_017310.1 KEGG: dde:Dde_0157 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; DeoR family transcriptional regulator 79936 12866985 Deval_0058 Desulfovibrio vulgaris RCH1 DeoR family transcriptional regulator YP_005700867.1 78434 R 573059 CDS YP_005700868.1 387151932 12866986 80120..81124 1 NC_017310.1 PFAM: AzlC family protein; KEGG: dde:Dde_0158 AzlC family protein; AzlC family protein 81124 12866986 Deval_0059 Desulfovibrio vulgaris RCH1 AzlC family protein YP_005700868.1 80120 D 573059 CDS YP_005700869.1 387151933 12866987 81114..81449 1 NC_017310.1 PFAM: branched-chain amino acid transport; KEGG: lhk:LHK_03139 branched-chain amino acid transport; branched-chain amino acid transport 81449 12866987 Deval_0060 Desulfovibrio vulgaris RCH1 branched-chain amino acid transport YP_005700869.1 81114 D 573059 CDS YP_005700870.1 387151934 12866988 81716..82330 1 NC_017310.1 PFAM: isochorismatase hydrolase; KEGG: ppd:Ppro_2976 isochorismatase hydrolase; isochorismatase hydrolase 82330 12866988 Deval_0061 Desulfovibrio vulgaris RCH1 isochorismatase hydrolase YP_005700870.1 81716 D 573059 CDS YP_005700871.1 387151935 12866989 82478..83263 1 NC_017310.1 PFAM: DSBA oxidoreductase; KEGG: dde:Dde_0163 DsbA-like thioredoxin domain-containing protein; DSBA oxidoreductase 83263 12866989 Deval_0062 Desulfovibrio vulgaris RCH1 DSBA oxidoreductase YP_005700871.1 82478 D 573059 CDS YP_005700872.1 387151936 12866990 complement(83652..83825) 1 NC_017310.1 KEGG: dde:Dde_3664 hypothetical protein; hypothetical protein 83825 12866990 Deval_0063 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700872.1 83652 R 573059 CDS YP_005700873.1 387151937 12866991 complement(84239..84694) 1 NC_017310.1 KEGG: drt:Dret_2390 putative zinc resistance-associated protein precursor; hypothetical protein 84694 12866991 Deval_0064 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700873.1 84239 R 573059 CDS YP_005700874.1 387151938 12866992 complement(84877..85293) 1 NC_017310.1 PFAM: protein of unknown function DUF523; KEGG: dsa:Desal_0784 protein of unknown function DUF523; hypothetical protein 85293 12866992 Deval_0065 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700874.1 84877 R 573059 CDS YP_005700875.1 387151939 12866993 complement(85631..87481) 1 NC_017310.1 KEGG: dde:Dde_3661 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 87481 12866993 Deval_0066 Desulfovibrio vulgaris RCH1 phospholipid/glycerol acyltransferase YP_005700875.1 85631 R 573059 CDS YP_005700876.1 387151940 12866994 87855..88223 1 NC_017310.1 KEGG: dsa:Desal_1072 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 88223 12866994 Deval_0067 Desulfovibrio vulgaris RCH1 TraR/DksA family transcriptional regulator YP_005700876.1 87855 D 573059 CDS YP_005700877.1 387151941 12866995 88406..89017 1 NC_017310.1 KEGG: gym:GYMC10_2690 hypothetical protein; hypothetical protein 89017 12866995 Deval_0068 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700877.1 88406 D 573059 CDS YP_005700878.1 387151942 12866996 complement(89210..90973) 1 NC_017310.1 KEGG: dde:Dde_3580 peptidoglycan-binding LysM; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; lytic transglycosylase 90973 12866996 Deval_0069 Desulfovibrio vulgaris RCH1 lytic transglycosylase YP_005700878.1 89210 R 573059 CDS YP_005700879.1 387151943 12866997 91116..92267 1 NC_017310.1 KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; TrmH family RNA methyltransferase 92267 12866997 Deval_0070 Desulfovibrio vulgaris RCH1 TrmH family RNA methyltransferase YP_005700879.1 91116 D 573059 CDS YP_005700880.1 387151944 12866998 complement(92507..92776) 1 NC_017310.1 KEGG: dde:Dde_3582 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; flagellar biosynthetic protein FliQ 92776 12866998 Deval_0071 Desulfovibrio vulgaris RCH1 flagellar biosynthetic protein FliQ YP_005700880.1 92507 R 573059 CDS YP_005700881.1 387151945 12866999 complement(92793..93491) 1 NC_017310.1 manually curated; TIGRFAM: flagellar biosynthetic protein FliP; KEGG: lip:LI0639 flagellar biosynthesis protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 93491 12866999 Deval_0072 Desulfovibrio vulgaris RCH1 flagellar biosynthetic protein FliP YP_005700881.1 92793 R 573059 CDS YP_005700882.1 387151946 12867000 complement(93529..94038) 1 NC_017310.1 TIGRFAM: flagellar biosynthetic protein FliO; KEGG: dds:Ddes_0376 flagellar biosynthesis protein FliO; flagellar biosynthetic protein FliO 94038 12867000 Deval_0073 Desulfovibrio vulgaris RCH1 flagellar biosynthetic protein FliO YP_005700882.1 93529 R 573059 CDS YP_005700883.1 387151947 12867001 complement(94043..94555) 1 NC_017310.1 KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliN 94555 12867001 Deval_0074 Desulfovibrio vulgaris RCH1 flagellar motor switch protein FliN YP_005700883.1 94043 R 573059 CDS YP_005700884.1 387151948 12867002 complement(94581..95090) 1 NC_017310.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_3586 flagellar protein FliL; flagellar basal body-associated protein FliL 95090 12867002 Deval_0075 Desulfovibrio vulgaris RCH1 flagellar basal body-associated protein FliL YP_005700884.1 94581 R 573059 CDS YP_005700885.1 387151949 12867003 complement(95117..95857) 1 NC_017310.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB; OmpA/MotB domain-containing protein 95857 12867003 Deval_0076 Desulfovibrio vulgaris RCH1 OmpA/MotB domain-containing protein YP_005700885.1 95117 R 573059 CDS YP_005700886.1 387151950 12867004 complement(95854..96948) 1 NC_017310.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein; OmpA/MotB domain-containing protein 96948 12867004 Deval_0077 Desulfovibrio vulgaris RCH1 OmpA/MotB domain-containing protein YP_005700886.1 95854 R 573059 CDS YP_005700887.1 387151951 12867005 complement(96960..97718) 1 NC_017310.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel 97718 12867005 Deval_0078 Desulfovibrio vulgaris RCH1 MotA/TolQ/ExbB proton channel YP_005700887.1 96960 R 573059 CDS YP_005700888.1 387151952 12867006 complement(97994..98725) 1 NC_017310.1 PFAM: alanine racemase domain protein; KEGG: dde:Dde_3590 hypothetical protein; alanine racemase 98725 12867006 Deval_0079 Desulfovibrio vulgaris RCH1 alanine racemase YP_005700888.1 97994 R 573059 CDS YP_005700889.1 387151953 12867007 complement(98800..99726) 1 NC_017310.1 KEGG: dds:Ddes_0371 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; GTP-binding protein Era 99726 12867007 Deval_0080 Desulfovibrio vulgaris RCH1 GTP-binding protein Era YP_005700889.1 98800 R 573059 CDS YP_005700890.1 387151954 12867008 99994..102030 1 NC_017310.1 KEGG: dds:Ddes_2081 sulphate transporter; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter 102030 12867008 Deval_0081 Desulfovibrio vulgaris RCH1 sulfate transporter YP_005700890.1 99994 D 573059 CDS YP_005700891.1 387151955 12867009 102394..103719 1 NC_017310.1 PFAM: dihydrouridine synthase DuS; KEGG: dde:Dde_0389 dihydrouridine synthase family protein; dihydrouridine synthase DuS 103719 12867009 Deval_0082 Desulfovibrio vulgaris RCH1 dihydrouridine synthase DuS YP_005700891.1 102394 D 573059 CDS YP_005700892.1 387151956 12867010 103716..104588 1 NC_017310.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: dde:Dde_0390 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 104588 12867010 Deval_0083 Desulfovibrio vulgaris RCH1 hydroxymethylbutenyl pyrophosphate reductase YP_005700892.1 103716 D 573059 CDS YP_005700893.1 387151957 12867011 104629..105582 1 NC_017310.1 KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; response regulator receiver modulated CheW protein 105582 12867011 Deval_0084 Desulfovibrio vulgaris RCH1 response regulator receiver modulated CheW protein YP_005700893.1 104629 D 573059 CDS YP_005700894.1 387151958 12867012 105842..106483 1 NC_017310.1 PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator; Transcriptional regulator TetR 106483 12867012 Deval_0085 Desulfovibrio vulgaris RCH1 Transcriptional regulator TetR YP_005700894.1 105842 D 573059 CDS YP_005700895.1 387151959 12867013 106480..107631 1 NC_017310.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tbd:Tbd_2532 secretion protein HlyD; RND family efflux transporter MFP subunit 107631 12867013 Deval_0086 Desulfovibrio vulgaris RCH1 RND family efflux transporter MFP subunit YP_005700895.1 106480 D 573059 CDS YP_005700896.1 387151960 12867014 107628..111338 1 NC_017310.1 PFAM: acriflavin resistance protein; KEGG: lhk:LHK_02826 probable transmembrane drug efflux protein; acriflavin resistance protein 111338 12867014 Deval_0087 Desulfovibrio vulgaris RCH1 acriflavin resistance protein YP_005700896.1 107628 D 573059 CDS YP_005700897.1 387151961 12867015 111493..112677 1 NC_017310.1 KEGG: cvi:CV_0435 multidrug efflux membrane permease; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 112677 12867015 Deval_0088 Desulfovibrio vulgaris RCH1 RND family efflux transporter MFP subunit YP_005700897.1 111493 D 573059 CDS YP_005700898.1 387151962 12867016 112693..115833 1 NC_017310.1 KEGG: dma:DMR_28420 efflux system protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 115833 12867016 Deval_0089 Desulfovibrio vulgaris RCH1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_005700898.1 112693 D 573059 CDS YP_005700899.1 387151963 12867017 115830..117344 1 NC_017310.1 KEGG: lhk:LHK_02931 OprM; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 117344 12867017 Deval_0090 Desulfovibrio vulgaris RCH1 NodT family RND efflux system outer membrane lipoprotein YP_005700899.1 115830 D 573059 CDS YP_005700900.1 387151964 12867018 117347..117814 1 NC_017310.1 KEGG: pmy:Pmen_1814 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 117814 12867018 Deval_0091 Desulfovibrio vulgaris RCH1 MarR family transcriptional regulator YP_005700900.1 117347 D 573059 CDS YP_005700901.1 387151965 12867019 117903..118811 1 NC_017310.1 KEGG: dsa:Desal_3410 hypothetical protein; hypothetical protein 118811 12867019 Deval_0092 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700901.1 117903 D 573059 CDS YP_005700902.1 387151966 12867020 119063..119860 1 NC_017310.1 KEGG: dma:DMR_43820 hypothetical protein; hypothetical protein 119860 12867020 Deval_0093 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700902.1 119063 D 573059 CDS YP_005700903.1 387151967 12867021 120075..120644 1 NC_017310.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: tai:Taci_1657 CMP/dCMP deaminase zinc-binding protein; CMP/dCMP deaminase zinc-binding protein 120644 12867021 Deval_0094 Desulfovibrio vulgaris RCH1 CMP/dCMP deaminase zinc-binding protein YP_005700903.1 120075 D 573059 CDS YP_005700904.1 387151968 12867022 complement(120815..121123) 1 NC_017310.1 manually curated; KEGG: ecb:100065359 similar to ceroid-lipofuscinosis, neuronal 6, late infantile, variant; hypothetical protein 121123 12867022 Deval_0095 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700904.1 120815 R 573059 CDS YP_005700905.1 387151969 12867023 complement(121500..123035) 1 NC_017310.1 KEGG: dde:Dde_3625 hypothetical protein; hypothetical protein 123035 12867023 Deval_0096 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700905.1 121500 R 573059 CDS YP_005700906.1 387151970 12867024 complement(123216..127619) 1 NC_017310.1 KEGG: dde:Dde_3624 hypothetical protein; hypothetical protein 127619 12867024 Deval_0097 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700906.1 123216 R 573059 CDS YP_005700907.1 387151971 12867025 complement(127619..128974) 1 NC_017310.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_3623 Ser/Thr protein phosphatase family protein; metallophosphoesterase 128974 12867025 Deval_0098 Desulfovibrio vulgaris RCH1 metallophosphoesterase YP_005700907.1 127619 R 573059 CDS YP_005700908.1 387151972 12867026 129492..130652 1 NC_017310.1 KEGG: dde:Dde_3621 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 130652 12867026 Deval_0099 Desulfovibrio vulgaris RCH1 DNA-directed DNA polymerase YP_005700908.1 129492 D 573059 CDS YP_005700909.1 387151973 12867027 131058..131837 1 NC_017310.1 KEGG: dde:Dde_3694 glucose-1-phosphate cytidylyl-transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase 131837 12867027 Deval_0100 Desulfovibrio vulgaris RCH1 glucose-1-phosphate cytidylyltransferase YP_005700909.1 131058 D 573059 CDS YP_005700910.1 387151974 12867028 131847..132953 1 NC_017310.1 KEGG: dds:Ddes_0876 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; CDP-glucose 4,6-dehydratase 132953 12867028 Deval_0101 Desulfovibrio vulgaris RCH1 CDP-glucose 4,6-dehydratase YP_005700910.1 131847 D 573059 CDS YP_005700911.1 387151975 12867029 132941..133384 1 NC_017310.1 KEGG: dds:Ddes_0875 polysaccharide biosynthesis domain-containing protein; polysaccharide biosynthesis domain-containing protein 133384 12867029 Deval_0102 Desulfovibrio vulgaris RCH1 polysaccharide biosynthesis domain-containing protein YP_005700911.1 132941 D 573059 CDS YP_005700912.1 387151976 12867030 133718..134851 1 NC_017310.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dds:Ddes_2174 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 134851 12867030 Deval_0103 Desulfovibrio vulgaris RCH1 DegT/DnrJ/EryC1/StrS aminotransferase YP_005700912.1 133718 D 573059 CDS YP_005700913.1 387151977 12867031 134869..135906 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dds:Ddes_2171 glycosyl transferase family 2; family 2 glycosyl transferase 135906 12867031 Deval_0104 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005700913.1 134869 D 573059 CDS YP_005700914.1 387151978 12867032 136269..137351 1 NC_017310.1 KEGG: dde:Dde_0097 hypothetical protein; hypothetical protein 137351 12867032 Deval_0105 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700914.1 136269 D 573059 CDS YP_005700915.1 387151979 12867033 137398..137739 1 NC_017310.1 KEGG: rce:RC1_2569 hypothetical protein; hypothetical protein 137739 12867033 Deval_0106 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700915.1 137398 D 573059 CDS YP_005700916.1 387151980 12867034 138112..138915 1 NC_017310.1 PFAM: zinc/iron permease; KEGG: aco:Amico_0219 zinc/iron permease; zinc/iron permease 138915 12867034 Deval_0107 Desulfovibrio vulgaris RCH1 zinc/iron permease YP_005700916.1 138112 D 573059 CDS YP_005700917.1 387151981 12867035 138953..140359 1 NC_017310.1 KEGG: dde:Dde_0240 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; class II fumarate hydratase 140359 12867035 Deval_0108 Desulfovibrio vulgaris RCH1 class II fumarate hydratase YP_005700917.1 138953 D 573059 CDS YP_005700918.1 387151982 12867036 complement(140512..142242) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: dde:Dde_0239 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 142242 12867036 Deval_0109 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005700918.1 140512 R 573059 CDS YP_005700919.1 387151983 12867037 complement(142336..143928) 1 NC_017310.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0236 hypothetical protein; NAD-dependent epimerase/dehydratase 143928 12867037 Deval_0110 Desulfovibrio vulgaris RCH1 NAD-dependent epimerase/dehydratase YP_005700919.1 142336 R 573059 CDS YP_005700920.1 387151984 12867038 144058..144477 1 NC_017310.1 PFAM: protein of unknown function DUF309; KEGG: dma:DMR_33670 hypothetical protein; hypothetical protein 144477 12867038 Deval_0111 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700920.1 144058 D 573059 CDS YP_005700921.1 387151985 12867039 complement(144549..145601) 1 NC_017310.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: dde:Dde_0076 translation initiation factor 2B subunit I; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 145601 12867039 Deval_0112 Desulfovibrio vulgaris RCH1 translation initiation factor, aIF-2BI family YP_005700921.1 144549 R 573059 CDS YP_005700922.1 387151986 12867040 146118..147362 1 NC_017310.1 KEGG: dde:Dde_0079 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 147362 12867040 Deval_0113 Desulfovibrio vulgaris RCH1 tryptophan synthase subunit beta YP_005700922.1 146118 D 573059 CDS YP_005700923.1 387151987 12867046 153855..154349 1 NC_017310.1 PFAM: protein of unknown function DUF997; KEGG: dde:Dde_3322 membrane protein-like; hypothetical protein 154349 12867046 Deval_0114 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700923.1 153855 D 573059 CDS YP_005700924.1 387151988 12867047 154346..155833 1 NC_017310.1 KEGG: dde:Dde_3321 sodium/panthothenate symporter; TIGRFAM: sodium/pantothenate symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; sodium/pantothenate symporter 155833 12867047 Deval_0115 Desulfovibrio vulgaris RCH1 sodium/pantothenate symporter YP_005700924.1 154346 D 573059 CDS YP_005700925.1 387151989 12867048 complement(155889..156692) 1 NC_017310.1 PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0374 hypothetical protein; family 3 extracellular solute-binding protein 156692 12867048 Deval_0116 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005700925.1 155889 R 573059 CDS YP_005700926.1 387151990 12867049 157269..158240 1 NC_017310.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: nhl:Nhal_1333 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 158240 12867049 Deval_0117 Desulfovibrio vulgaris RCH1 NAD-dependent epimerase/dehydratase YP_005700926.1 157269 D 573059 CDS YP_005700927.1 387151991 12867050 158293..159015 1 NC_017310.1 KEGG: cyh:Cyan8802_0670 protein of unknown function DUF88; hypothetical protein 159015 12867050 Deval_0118 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700927.1 158293 D 573059 CDS YP_005700928.1 387151992 12867051 complement(159072..162389) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 162389 12867051 Deval_0119 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_005700928.1 159072 R 573059 CDS YP_005700929.1 387151993 12867052 complement(162645..165095) 1 NC_017310.1 KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein; PFAM: glycosyl transferase group 1; PHP domain protein; SMART: phosphoesterase PHP domain protein; group 1 glycosyl transferase 165095 12867052 Deval_0120 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005700929.1 162645 R 573059 CDS YP_005700930.1 387151994 12867053 165327..167489 1 NC_017310.1 KEGG: dde:Dde_1752 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 167489 12867053 Deval_0121 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005700930.1 165327 D 573059 CDS YP_005700931.1 387151995 12867054 complement(167630..168667) 1 NC_017310.1 PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_3673 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 168667 12867054 Deval_0122 Desulfovibrio vulgaris RCH1 extracellular solute-binding protein YP_005700931.1 167630 R 573059 CDS YP_005700932.1 387151996 12867055 complement(168669..169442) 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0831 spermidine/putrescine ABC transporter membrane protein; binding-protein-dependent transport system inner membrane protein 169442 12867055 Deval_0123 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005700932.1 168669 R 573059 CDS YP_005700933.1 387151997 12867056 complement(169445..170332) 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0830 ABC-type spermidine/putrescine transport system, permease component I; binding-protein-dependent transport system inner membrane protein 170332 12867056 Deval_0124 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005700933.1 169445 R 573059 CDS YP_005700934.1 387151998 12867057 complement(170319..171425) 1 NC_017310.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: dde:Dde_3670 putrescine/spermidine ABC transporter ATPase protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 171425 12867057 Deval_0125 Desulfovibrio vulgaris RCH1 spermidine/putrescine ABC transporter ATPase YP_005700934.1 170319 R 573059 CDS YP_005700935.1 387151999 12867058 complement(171843..173135) 1 NC_017310.1 KEGG: sfu:Sfum_3705 TonB protein; TIGRFAM: TonB family protein; PFAM: TonB domain; TonB family protein 173135 12867058 Deval_0126 Desulfovibrio vulgaris RCH1 TonB family protein YP_005700935.1 171843 R 573059 CDS YP_005700936.1 387152000 12867059 173300..175249 1 NC_017310.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: hch:HCH_02841 TonB-dependent receptor family protein; TonB-dependent receptor plug 175249 12867059 Deval_0127 Desulfovibrio vulgaris RCH1 TonB-dependent receptor plug YP_005700936.1 173300 D 573059 CDS YP_005700937.1 387152001 12867060 175360..176886 1 NC_017310.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dae:Dtox_0549 methyltransferase type 11; type 11 methyltransferase 176886 12867060 Deval_0128 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005700937.1 175360 D 573059 CDS YP_005700938.1 387152002 12867061 177074..178066 1 NC_017310.1 PFAM: periplasmic solute binding protein; KEGG: dau:Daud_1151 periplasmic solute binding protein; periplasmic solute binding protein 178066 12867061 Deval_0129 Desulfovibrio vulgaris RCH1 periplasmic solute binding protein YP_005700938.1 177074 D 573059 CDS YP_005700939.1 387152003 12867062 178063..179040 1 NC_017310.1 KEGG: dau:Daud_1150 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 179040 12867062 Deval_0130 Desulfovibrio vulgaris RCH1 ABC transporter YP_005700939.1 178063 D 573059 CDS YP_005700940.1 387152004 12867063 179049..179885 1 NC_017310.1 PFAM: ABC-3 protein; KEGG: dau:Daud_1149 ABC-3 protein; ABC-3 protein 179885 12867063 Deval_0131 Desulfovibrio vulgaris RCH1 ABC-3 protein YP_005700940.1 179049 D 573059 CDS YP_005700941.1 387152005 12867064 complement(180129..180863) 1 NC_017310.1 KEGG: dde:Dde_0166 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 180863 12867064 Deval_0132 Desulfovibrio vulgaris RCH1 ABC transporter YP_005700941.1 180129 R 573059 CDS YP_005700942.1 387152006 12867065 complement(180937..181608) 1 NC_017310.1 KEGG: dde:Dde_0167 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 181608 12867065 Deval_0133 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005700942.1 180937 R 573059 CDS YP_005700943.1 387152007 12867066 complement(181723..182472) 1 NC_017310.1 KEGG: dde:Dde_0168 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein 182472 12867066 Deval_0134 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005700943.1 181723 R 573059 CDS YP_005700944.1 387152008 12867067 183534..184640 1 NC_017310.1 KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 184640 12867067 Deval_0135 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005700944.1 183534 D 573059 CDS YP_005700945.1 387152009 12867068 184625..186055 1 NC_017310.1 KEGG: dma:DMR_16180 NtrC family two-component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 186055 12867068 Deval_0136 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005700945.1 184625 D 573059 CDS YP_005700946.1 387152010 12867069 186189..186995 1 NC_017310.1 KEGG: dde:Dde_0178 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 186995 12867069 Deval_0137 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005700946.1 186189 D 573059 CDS YP_005700947.1 387152011 12867070 186992..188428 1 NC_017310.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dde:Dde_0179 deoxyribodipyrimidine photo-lyase type II; DNA photolyase FAD-binding protein 188428 12867070 Deval_0138 Desulfovibrio vulgaris RCH1 DNA photolyase FAD-binding protein YP_005700947.1 186992 D 573059 CDS YP_005700948.1 387152012 12867071 189070..189450 1 NC_017310.1 KEGG: dde:Dde_3567 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 189450 12867071 Deval_0139 Desulfovibrio vulgaris RCH1 phosphoribosyl-AMP cyclohydrolase YP_005700948.1 189070 D 573059 CDS YP_005700949.1 387152013 12867072 189447..190328 1 NC_017310.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: dde:Dde_3566 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase 190328 12867072 Deval_0140 Desulfovibrio vulgaris RCH1 ATP phosphoribosyltransferase YP_005700949.1 189447 D 573059 CDS YP_005700950.1 387152014 12867073 190428..191333 1 NC_017310.1 KEGG: dde:Dde_3564 shikimate dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; shikimate 5-dehydrogenase 191333 12867073 Deval_0141 Desulfovibrio vulgaris RCH1 shikimate 5-dehydrogenase YP_005700950.1 190428 D 573059 CDS YP_005700951.1 387152015 12867074 191672..192748 1 NC_017310.1 PFAM: polysaccharide deacetylase; KEGG: gsu:GSU0659 polysaccharide deacetylase domain-containing protein; polysaccharide deacetylase 192748 12867074 Deval_0142 Desulfovibrio vulgaris RCH1 polysaccharide deacetylase YP_005700951.1 191672 D 573059 CDS YP_005700952.1 387152016 12867075 complement(192796..193713) 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dsa:Desal_0966 glycosyl transferase family 2; family 2 glycosyl transferase 193713 12867075 Deval_0143 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005700952.1 192796 R 573059 CDS YP_005700953.1 387152017 12867076 complement(194000..195364) 1 NC_017310.1 KEGG: tye:THEYE_A0124 acetoacetate metabolism regulatory protein AtoC; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 195364 12867076 Deval_0144 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005700953.1 194000 R 573059 CDS YP_005700954.1 387152018 12867077 complement(195361..197025) 1 NC_017310.1 KEGG: glo:Glov_1152 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 197025 12867077 Deval_0145 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005700954.1 195361 R 573059 CDS YP_005700955.1 387152019 12867078 complement(197022..197960) 1 NC_017310.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: glo:Glov_1153 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 197960 12867078 Deval_0146 Desulfovibrio vulgaris RCH1 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_005700955.1 197022 R 573059 CDS YP_005700956.1 387152020 12867079 complement(198010..198453) 1 NC_017310.1 KEGG: drm:Dred_1860 UspA domain-containing protein; hypothetical protein 198453 12867079 Deval_0147 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700956.1 198010 R 573059 CDS YP_005700957.1 387152021 12867080 complement(198535..198633) 1 NC_017310.1 hypothetical protein 198633 12867080 Deval_0148 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700957.1 198535 R 573059 CDS YP_005700958.1 387152022 12867081 complement(198646..199728) 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0324; KEGG: drm:Dred_1861 hypothetical protein; hypothetical protein 199728 12867081 Deval_0149 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700958.1 198646 R 573059 CDS YP_005700959.1 387152023 12867082 complement(199795..199935) 1 NC_017310.1 hypothetical protein 199935 12867082 Deval_0150 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700959.1 199795 R 573059 CDS YP_005700960.1 387152024 12867083 200166..201299 1 NC_017310.1 PFAM: secretion protein HlyD family protein; KEGG: vap:Vapar_1741 secretion protein HlyD family protein; secretion protein HlyD family protein 201299 12867083 Deval_0151 Desulfovibrio vulgaris RCH1 secretion protein HlyD family protein YP_005700960.1 200166 D 573059 CDS YP_005700961.1 387152025 12867084 201296..204811 1 NC_017310.1 KEGG: slt:Slit_2512 ABC transporter related protein; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; ABC transporter 204811 12867084 Deval_0152 Desulfovibrio vulgaris RCH1 ABC transporter YP_005700961.1 201296 D 573059 CDS YP_005700962.1 387152026 12867085 204815..205927 1 NC_017310.1 PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter; ABC transporter 205927 12867085 Deval_0153 Desulfovibrio vulgaris RCH1 ABC transporter YP_005700962.1 204815 D 573059 CDS YP_005700963.1 387152027 12867086 complement(206143..207201) 1 NC_017310.1 PFAM: protein of unknown function UPF0118; KEGG: lip:LI0472 permease; hypothetical protein 207201 12867086 Deval_0154 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700963.1 206143 R 573059 CDS YP_005700964.1 387152028 12867087 207446..208804 1 NC_017310.1 TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; KEGG: putative PAS/PAC sensor protein; SMART: metal-dependent phosphohydrolase HD region; PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 208804 12867087 Deval_0155 Desulfovibrio vulgaris RCH1 putative PAS/PAC sensor protein YP_005700964.1 207446 D 573059 CDS YP_005700965.1 387152029 12867088 complement(208983..209645) 1 NC_017310.1 KEGG: hmo:HM1_1613 phosphoglycolate phosphatase, putative; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 209645 12867088 Deval_0156 Desulfovibrio vulgaris RCH1 HAD-superfamily hydrolase YP_005700965.1 208983 R 573059 CDS YP_005700966.1 387152030 12867089 210065..211312 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: dma:DMR_16160 hypothetical membrane protein; hypothetical protein 211312 12867089 Deval_0157 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700966.1 210065 D 573059 CDS YP_005700967.1 387152031 12867090 211314..212036 1 NC_017310.1 KEGG: sfu:Sfum_0645 hypothetical protein; hypothetical protein 212036 12867090 Deval_0158 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700967.1 211314 D 573059 CDS YP_005700968.1 387152032 12867091 complement(212397..213434) 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3612 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 213434 12867091 Deval_0159 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005700968.1 212397 R 573059 CDS YP_005700969.1 387152033 12867092 complement(213515..214426) 1 NC_017310.1 PFAM: PP-loop domain protein; KEGG: dds:Ddes_2277 PP-loop domain protein; PP-loop domain-containing protein 214426 12867092 Deval_0160 Desulfovibrio vulgaris RCH1 PP-loop domain-containing protein YP_005700969.1 213515 R 573059 CDS YP_005700970.1 387152034 12867093 complement(214591..214809) 1 NC_017310.1 KEGG: dds:Ddes_0034 hypothetical protein; hypothetical protein 214809 12867093 Deval_0161 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700970.1 214591 R 573059 CDS YP_005700971.1 387152035 12867094 complement(214863..214988) 1 NC_017310.1 hypothetical protein 214988 12867094 Deval_0162 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700971.1 214863 R 573059 CDS YP_005700972.1 387152036 12867095 215039..215419 1 NC_017310.1 KEGG: dde:Dde_3609 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 215419 12867095 Deval_0163 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005700972.1 215039 D 573059 CDS YP_005700973.1 387152037 12867096 215725..217437 1 NC_017310.1 KEGG: dol:Dole_1356 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 217437 12867096 Deval_0164 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005700973.1 215725 D 573059 CDS YP_005700974.1 387152038 12867097 217545..217958 1 NC_017310.1 KEGG: dal:Dalk_2251 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 217958 12867097 Deval_0165 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005700974.1 217545 D 573059 CDS YP_005700975.1 387152039 12867098 218288..218962 1 NC_017310.1 PFAM: peptidase M50; KEGG: dde:Dde_3608 M50 family peptidase; peptidase M50 218962 12867098 Deval_0166 Desulfovibrio vulgaris RCH1 peptidase M50 YP_005700975.1 218288 D 573059 CDS YP_005700976.1 387152040 12867099 218991..219980 1 NC_017310.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: dde:Dde_3607 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 219980 12867099 Deval_0167 Desulfovibrio vulgaris RCH1 tryptophanyl-tRNA synthetase YP_005700976.1 218991 D 573059 CDS YP_005700977.1 387152041 12867100 219992..220768 1 NC_017310.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3606 hypothetical protein; hypothetical protein 220768 12867100 Deval_0168 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700977.1 219992 D 573059 CDS YP_005700978.1 387152042 12867101 220994..221596 1 NC_017310.1 KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; rfaE bifunctional protein 221596 12867101 Deval_0169 Desulfovibrio vulgaris RCH1 rfaE bifunctional protein YP_005700978.1 220994 D 573059 CDS YP_005700979.1 387152043 12867102 complement(221982..222389) 1 NC_017310.1 KEGG: sfu:Sfum_0648 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 222389 12867102 Deval_0170 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005700979.1 221982 R 573059 CDS YP_005700980.1 387152044 12867103 complement(222533..223342) 1 NC_017310.1 KEGG: dds:Ddes_1638 hypothetical protein; hypothetical protein 223342 12867103 Deval_0171 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700980.1 222533 R 573059 CDS YP_005700981.1 387152045 12867104 complement(223339..223599) 1 NC_017310.1 KEGG: dma:DMR_42260 hypothetical protein; hypothetical protein 223599 12867104 Deval_0172 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700981.1 223339 R 573059 CDS YP_005700982.1 387152046 12867105 complement(223672..224283) 1 NC_017310.1 KEGG: sfu:Sfum_0627 putative lipoprotein; putative lipoprotein 224283 12867105 Deval_0173 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005700982.1 223672 R 573059 CDS YP_005700983.1 387152047 12867106 complement(224306..225358) 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 hypothetical protein; hypothetical protein 225358 12867106 Deval_0174 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700983.1 224306 R 573059 CDS YP_005700984.1 387152048 12867107 complement(225380..225676) 1 NC_017310.1 KEGG: sfu:Sfum_0625 hypothetical protein; hypothetical protein 225676 12867107 Deval_0175 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700984.1 225380 R 573059 CDS YP_005700985.1 387152049 12867108 225996..228869 1 NC_017310.1 KEGG: dds:Ddes_1643 sigma 54 interacting domain protein; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; sigma-54 interacting domain-containing protein 228869 12867108 Deval_0176 Desulfovibrio vulgaris RCH1 sigma-54 interacting domain-containing protein YP_005700985.1 225996 D 573059 CDS YP_005700986.1 387152050 12867109 228939..231500 1 NC_017310.1 KEGG: dds:Ddes_1644 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; pyruvate, water dikinase 231500 12867109 Deval_0177 Desulfovibrio vulgaris RCH1 pyruvate, water dikinase YP_005700986.1 228939 D 573059 CDS YP_005700987.1 387152051 12867111 complement(231957..232340) 1 NC_017310.1 KEGG: dde:Dde_3573 hypothetical protein; hypothetical protein 232340 12867111 Deval_0178 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700987.1 231957 R 573059 CDS YP_005700988.1 387152052 12867112 232808..234196 1 NC_017310.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein; type I phosphodiesterase/nucleotide pyrophosphatase 234196 12867112 Deval_0179 Desulfovibrio vulgaris RCH1 type I phosphodiesterase/nucleotide pyrophosphatase YP_005700988.1 232808 D 573059 CDS YP_005700989.1 387152053 12867113 234193..236352 1 NC_017310.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 236352 12867113 Deval_0180 Desulfovibrio vulgaris RCH1 UvrD/REP helicase YP_005700989.1 234193 D 573059 CDS YP_005700990.1 387152054 12867114 236349..237320 1 NC_017310.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: dsa:Desal_2336 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 237320 12867114 Deval_0181 Desulfovibrio vulgaris RCH1 thiamine-monophosphate kinase YP_005700990.1 236349 D 573059 CDS YP_005700991.1 387152055 12867115 237341..238339 1 NC_017310.1 PFAM: class II aldolase/adducin family protein; Uncharacterised protein family UPF0066; KEGG: dde:Dde_3569 hypothetical protein; class II aldolase/adducin family protein 238339 12867115 Deval_0182 Desulfovibrio vulgaris RCH1 class II aldolase/adducin family protein YP_005700991.1 237341 D 573059 CDS YP_005700992.1 387152056 12867116 complement(238553..239074) 1 NC_017310.1 PFAM: thioesterase superfamily protein; KEGG: dba:Dbac_1797 thioesterase superfamily protein; thioesterase superfamily protein 239074 12867116 Deval_0183 Desulfovibrio vulgaris RCH1 thioesterase superfamily protein YP_005700992.1 238553 R 573059 CDS YP_005700993.1 387152057 12867117 complement(239100..240095) 1 NC_017310.1 SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: dde:Dde_0335 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; KpsF/GutQ family protein 240095 12867117 Deval_0184 Desulfovibrio vulgaris RCH1 KpsF/GutQ family protein YP_005700993.1 239100 R 573059 CDS YP_005700994.1 387152058 12867118 complement(240092..240361) 1 NC_017310.1 KEGG: swi:Swit_2951 acyltransferase 3; hypothetical protein 240361 12867118 Deval_0185 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005700994.1 240092 R 573059 CDS YP_005700995.1 387152059 12867119 complement(240398..241786) 1 NC_017310.1 KEGG: dde:Dde_0334 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; amidophosphoribosyltransferase 241786 12867119 Deval_0186 Desulfovibrio vulgaris RCH1 amidophosphoribosyltransferase YP_005700995.1 240398 R 573059 CDS YP_005700996.1 387152060 12867120 complement(241814..245047) 1 NC_017310.1 KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; carbamoyl-phosphate synthase large subunit 245047 12867120 Deval_0187 Desulfovibrio vulgaris RCH1 carbamoyl-phosphate synthase large subunit YP_005700996.1 241814 R 573059 CDS YP_005700997.1 387152061 12867121 245486..246046 1 NC_017310.1 KEGG: dma:DMR_44310 hypothetical protein; manually curated; PFAM: Dihaem cytochrome c; Diheme cytochrome c 246046 12867121 Deval_0188 Desulfovibrio vulgaris RCH1 Diheme cytochrome c YP_005700997.1 245486 D 573059 CDS YP_005700998.1 387152062 12867122 246107..247018 1 NC_017310.1 KEGG: drt:Dret_1021 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 247018 12867122 Deval_0189 Desulfovibrio vulgaris RCH1 cation diffusion facilitator family transporter YP_005700998.1 246107 D 573059 CDS YP_005700999.1 387152063 12867123 complement(247303..248316) 1 NC_017310.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_0271 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 248316 12867123 Deval_0190 Desulfovibrio vulgaris RCH1 oligopeptide/dipeptide ABC transporter ATPase YP_005700999.1 247303 R 573059 CDS YP_005701000.1 387152064 12867124 complement(248327..249313) 1 NC_017310.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_0272 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 249313 12867124 Deval_0191 Desulfovibrio vulgaris RCH1 oligopeptide/dipeptide ABC transporter ATPase YP_005701000.1 248327 R 573059 CDS YP_005701001.1 387152065 12867125 complement(249316..250236) 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 250236 12867125 Deval_0192 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005701001.1 249316 R 573059 CDS YP_005701002.1 387152066 12867126 complement(250238..251215) 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 251215 12867126 Deval_0193 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005701002.1 250238 R 573059 CDS YP_005701003.1 387152067 12867127 complement(251385..252947) 1 NC_017310.1 PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein; family 5 extracellular solute-binding protein 252947 12867127 Deval_0194 Desulfovibrio vulgaris RCH1 family 5 extracellular solute-binding protein YP_005701003.1 251385 R 573059 CDS YP_005701004.1 387152068 12867128 253381..255450 1 NC_017310.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: dsa:Desal_0932 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 255450 12867128 Deval_0195 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005701004.1 253381 D 573059 CDS YP_005701005.1 387152069 12867129 complement(255679..256860) 1 NC_017310.1 PFAM: aminotransferase class I and II; KEGG: pde:Pden_0648 aminotransferase, class I and II; class I and II aminotransferase 256860 12867129 Deval_0196 Desulfovibrio vulgaris RCH1 class I and II aminotransferase YP_005701005.1 255679 R 573059 CDS YP_005701006.1 387152070 12867130 complement(257438..258439) 1 NC_017310.1 KEGG: tye:THEYE_A1127 anaerobic dimethyl sulfoxide reductase chain B; hypothetical protein 258439 12867130 Deval_0197 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701006.1 257438 R 573059 CDS YP_005701007.1 387152071 12867131 complement(258449..260545) 1 NC_017310.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dba:Dbac_2860 molybdopterin oxidoreductase; molybdopterin oxidoreductase 260545 12867131 Deval_0198 Desulfovibrio vulgaris RCH1 molybdopterin oxidoreductase YP_005701007.1 258449 R 573059 CDS YP_005701008.1 387152072 12867132 complement(261212..262843) 1 NC_017310.1 PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dba:Dbac_1566 formylmethanofuran dehydrogenase subunit E region; formylmethanofuran dehydrogenase subunit E 262843 12867132 Deval_0199 Desulfovibrio vulgaris RCH1 formylmethanofuran dehydrogenase subunit E YP_005701008.1 261212 R 573059 CDS YP_005701009.1 387152073 12867133 complement(263099..263998) 1 NC_017310.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfu:Sfum_0868 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 263998 12867133 Deval_0200 Desulfovibrio vulgaris RCH1 glycerophosphoryl diester phosphodiesterase YP_005701009.1 263099 R 573059 CDS YP_005701010.1 387152074 12867134 complement(264148..264957) 1 NC_017310.1 KEGG: dds:Ddes_0168 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein 264957 12867134 Deval_0201 Desulfovibrio vulgaris RCH1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_005701010.1 264148 R 573059 CDS YP_005701011.1 387152075 12867135 265162..266559 1 NC_017310.1 PFAM: TOBE domain-containing protein; integrase family protein; KEGG: dba:Dbac_1580 TOBE domain protein; TOBE domain-containing protein 266559 12867135 Deval_0202 Desulfovibrio vulgaris RCH1 TOBE domain-containing protein YP_005701011.1 265162 D 573059 CDS YP_005701012.1 387152076 12867136 complement(266546..267307) 1 NC_017310.1 KEGG: sfu:Sfum_3696 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 267307 12867136 Deval_0203 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701012.1 266546 R 573059 CDS YP_005701013.1 387152077 12867137 complement(267304..268005) 1 NC_017310.1 KEGG: dds:Ddes_0169 molybdate ABC transporter, inner membrane subunit; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit 268005 12867137 Deval_0204 Desulfovibrio vulgaris RCH1 molybdate ABC transporter inner membrane subunit YP_005701013.1 267304 R 573059 CDS YP_005701014.1 387152078 12867138 complement(268370..269293) 1 NC_017310.1 PFAM: Radical SAM domain protein; KEGG: dsa:Desal_1058 radical SAM domain protein; radical SAM protein 269293 12867138 Deval_0205 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005701014.1 268370 R 573059 CDS YP_005701015.1 387152079 12867139 complement(269461..271230) 1 NC_017310.1 KEGG: dma:DMR_12590 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 271230 12867139 Deval_0206 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005701015.1 269461 R 573059 CDS YP_005701016.1 387152080 12867140 271975..272754 1 NC_017310.1 PFAM: protein of unknown function DUF169; KEGG: drt:Dret_2437 protein of unknown function DUF169; hypothetical protein 272754 12867140 Deval_0207 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701016.1 271975 D 573059 CDS YP_005701017.1 387152081 12867141 complement(273176..274303) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dhd:Dhaf_0017 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 274303 12867141 Deval_0208 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005701017.1 273176 R 573059 CDS YP_005701018.1 387152082 12867142 complement(274477..274755) 1 NC_017310.1 KEGG: bvi:Bcep1808_6854 hypothetical protein; hypothetical protein 274755 12867142 Deval_0209 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701018.1 274477 R 573059 CDS YP_005701019.1 387152083 12867144 complement(275231..276505) 1 NC_017310.1 TIGRFAM: seryl-tRNA synthetase; KEGG: dde:Dde_0196 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 276505 12867144 Deval_0210 Desulfovibrio vulgaris RCH1 seryl-tRNA synthetase YP_005701019.1 275231 R 573059 CDS YP_005701020.1 387152084 12867145 complement(276610..276999) 1 NC_017310.1 KEGG: dde:Dde_0197 hypothetical protein; hypothetical protein 276999 12867145 Deval_0211 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701020.1 276610 R 573059 CDS YP_005701021.1 387152085 12867146 complement(277535..277942) 1 NC_017310.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0203 hypothetical protein; type IV pilus assembly PilZ 277942 12867146 Deval_0212 Desulfovibrio vulgaris RCH1 type IV pilus assembly PilZ YP_005701021.1 277535 R 573059 CDS YP_005701022.1 387152086 12867147 278118..278495 1 NC_017310.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 278495 12867147 Deval_0213 Desulfovibrio vulgaris RCH1 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_005701022.1 278118 D 573059 CDS YP_005701023.1 387152087 12867148 278508..278996 1 NC_017310.1 PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 SecC motif-containing protein; SEC-C motif domain-containing protein 278996 12867148 Deval_0214 Desulfovibrio vulgaris RCH1 SEC-C motif domain-containing protein YP_005701023.1 278508 D 573059 CDS YP_005701024.1 387152088 12867149 279326..279979 1 NC_017310.1 KEGG: dde:Dde_0206 hypothetical protein; hypothetical protein 279979 12867149 Deval_0215 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701024.1 279326 D 573059 CDS YP_005701025.1 387152089 12867150 280009..280677 1 NC_017310.1 KEGG: sat:SYN_02957 hypothetical protein; hypothetical protein 280677 12867150 Deval_0216 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701025.1 280009 D 573059 CDS YP_005701026.1 387152090 12867151 complement(280737..281426) 1 NC_017310.1 KEGG: dma:DMR_15800 putative sensor histidine kinase; hypothetical protein 281426 12867151 Deval_0217 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701026.1 280737 R 573059 CDS YP_005701027.1 387152091 12867152 complement(281624..282733) 1 NC_017310.1 KEGG: dma:DMR_38730 putative phosphatase; PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; dual specificity protein phosphatase 282733 12867152 Deval_0218 Desulfovibrio vulgaris RCH1 dual specificity protein phosphatase YP_005701027.1 281624 R 573059 CDS YP_005701028.1 387152092 12867153 complement(282730..282912) 1 NC_017310.1 KEGG: acetylornithine and succinylornithine aminotransferase; hypothetical protein 282912 12867153 Deval_0219 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701028.1 282730 R 573059 CDS YP_005701029.1 387152093 12867154 complement(282912..285491) 1 NC_017310.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase; pyruvate phosphate dikinase PEP/pyruvate-binding protein 285491 12867154 Deval_0220 Desulfovibrio vulgaris RCH1 pyruvate phosphate dikinase PEP/pyruvate-binding protein YP_005701029.1 282912 R 573059 CDS YP_005701030.1 387152094 12867155 complement(285509..285868) 1 NC_017310.1 KEGG: dde:Dde_0603 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 285868 12867155 Deval_0221 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005701030.1 285509 R 573059 CDS YP_005701031.1 387152095 12867156 complement(285878..287986) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase 287986 12867156 Deval_0222 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701031.1 285878 R 573059 CDS YP_005701032.1 387152096 12867157 complement(287989..288951) 1 NC_017310.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 288951 12867157 Deval_0223 Desulfovibrio vulgaris RCH1 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_005701032.1 287989 R 573059 CDS YP_005701033.1 387152097 12867158 complement(289268..289855) 1 NC_017310.1 KEGG: dds:Ddes_1653 hypothetical protein; hypothetical protein 289855 12867158 Deval_0224 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701033.1 289268 R 573059 CDS YP_005701034.1 387152098 12867159 complement(289932..291077) 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_03470 hypothetical protein; hypothetical protein 291077 12867159 Deval_0225 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701034.1 289932 R 573059 CDS YP_005701035.1 387152099 12867160 complement(291587..294412) 1 NC_017310.1 KEGG: dde:Dde_3604 oxidoreductase; PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase 294412 12867160 Deval_0226 Desulfovibrio vulgaris RCH1 D-lactate dehydrogenase YP_005701035.1 291587 R 573059 CDS YP_005701036.1 387152100 12867161 294922..295476 1 NC_017310.1 KEGG: rha:RHA1_ro02179 hypothetical protein; hypothetical protein 295476 12867161 Deval_0227 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701036.1 294922 D 573059 CDS YP_005701037.1 387152101 12867162 complement(295586..298951) 1 NC_017310.1 KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; Protein of unknown function DUF1998; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 298951 12867162 Deval_0228 Desulfovibrio vulgaris RCH1 DEAD/DEAH box helicase YP_005701037.1 295586 R 573059 CDS YP_005701038.1 387152102 12867168 305388..305852 1 NC_017310.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_3024 acetyltransferase; N-acetyltransferase GCN5 305852 12867168 Deval_0229 Desulfovibrio vulgaris RCH1 N-acetyltransferase GCN5 YP_005701038.1 305388 D 573059 CDS YP_005701039.1 387152103 12867169 complement(306013..307986) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; multi-sensor signal transduction histidine kinase 307986 12867169 Deval_0230 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701039.1 306013 R 573059 CDS YP_005701040.1 387152104 12867170 complement(308247..308636) 1 NC_017310.1 KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 308636 12867170 Deval_0231 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005701040.1 308247 R 573059 CDS YP_005701041.1 387152105 12867171 complement(308654..309055) 1 NC_017310.1 KEGG: dde:Dde_3713 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 309055 12867171 Deval_0232 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005701041.1 308654 R 573059 CDS YP_005701042.1 387152106 12867172 complement(309075..310001) 1 NC_017310.1 PFAM: UspA domain-containing protein; KEGG: dde:Dde_3712 universal stress protein; UspA domain-containing protein 310001 12867172 Deval_0233 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005701042.1 309075 R 573059 CDS YP_005701043.1 387152107 12867173 complement(310005..310559) 1 NC_017310.1 KEGG: dde:Dde_3711 hypothetical protein; hypothetical protein 310559 12867173 Deval_0234 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701043.1 310005 R 573059 CDS YP_005701044.1 387152108 12867174 complement(310581..310961) 1 NC_017310.1 KEGG: dde:Dde_3710 acidic cytochrome c3; acidic cytochrome c3 310961 12867174 Deval_0235 Desulfovibrio vulgaris RCH1 acidic cytochrome c3 YP_005701044.1 310581 R 573059 CDS YP_005701045.1 387152109 12867175 complement(310987..312306) 1 NC_017310.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin, 4Fe-4S, putative; hypothetical protein 312306 12867175 Deval_0236 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701045.1 310987 R 573059 CDS YP_005701046.1 387152110 12867176 complement(312326..312985) 1 NC_017310.1 KEGG: dde:Dde_3708 hypothetical protein; hypothetical protein 312985 12867176 Deval_0237 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701046.1 312326 R 573059 CDS YP_005701047.1 387152111 12867177 complement(312994..314250) 1 NC_017310.1 KEGG: dde:Dde_3707 hypothetical protein; hypothetical protein 314250 12867177 Deval_0238 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701047.1 312994 R 573059 CDS YP_005701048.1 387152112 12867178 314792..315289 1 NC_017310.1 KEGG: dde:Dde_3719 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator 315289 12867178 Deval_0239 Desulfovibrio vulgaris RCH1 AsnC family transcriptional regulator YP_005701048.1 314792 D 573059 CDS YP_005701049.1 387152113 12867179 315529..317799 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 317799 12867179 Deval_0240 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701049.1 315529 D 573059 CDS YP_005701050.1 387152114 12867180 317796..319286 1 NC_017310.1 KEGG: dde:Dde_3717 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; response regulator receiver sensor signal transduction histidine kinase 319286 12867180 Deval_0241 Desulfovibrio vulgaris RCH1 response regulator receiver sensor signal transduction histidine kinase YP_005701050.1 317796 D 573059 CDS YP_005701051.1 387152115 12867181 319811..321232 1 NC_017310.1 KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 321232 12867181 Deval_0242 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701051.1 319811 D 573059 CDS YP_005701052.1 387152116 12867182 complement(321306..321500) 1 NC_017310.1 KEGG: rno:310460 Src homology 3 domain-containing guanine nucleotide exchange factor; guanine nucleotide exchange factor domain-containing protein 321500 12867182 Deval_0243 Desulfovibrio vulgaris RCH1 guanine nucleotide exchange factor domain-containing protein YP_005701052.1 321306 R 573059 CDS YP_005701053.1 387152117 12867183 complement(321544..321915) 1 NC_017310.1 KEGG: dde:Dde_0268 hypothetical protein; hypothetical protein 321915 12867183 Deval_0244 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701053.1 321544 R 573059 CDS YP_005701054.1 387152118 12867184 complement(322210..322905) 1 NC_017310.1 PFAM: polysaccharide deacetylase; KEGG: dds:Ddes_0123 polysaccharide deacetylase; polysaccharide deacetylase 322905 12867184 Deval_0245 Desulfovibrio vulgaris RCH1 polysaccharide deacetylase YP_005701054.1 322210 R 573059 CDS YP_005701055.1 387152119 12867188 complement(323970..324368) 1 NC_017310.1 PFAM: protein of unknown function DUF302; KEGG: cai:Caci_8650 protein of unknown function DUF302; hypothetical protein 324368 12867188 Deval_0246 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701055.1 323970 R 573059 CDS YP_005701056.1 387152120 12867189 324513..324746 1 NC_017310.1 KEGG: dsa:Desal_3579 hypothetical protein; hypothetical protein 324746 12867189 Deval_0247 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701056.1 324513 D 573059 CDS YP_005701057.1 387152121 12867190 324923..325903 1 NC_017310.1 KEGG: cts:Ctha_2308 transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 325903 12867190 Deval_0248 Desulfovibrio vulgaris RCH1 AraC family transcriptional regulator YP_005701057.1 324923 D 573059 CDS YP_005701058.1 387152122 12867191 complement(326197..326619) 1 NC_017310.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_3083 glyoxalase family protein; Glyoxalase/bleomycin resistance protein/dioxygenase 326619 12867191 Deval_0249 Desulfovibrio vulgaris RCH1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_005701058.1 326197 R 573059 CDS YP_005701059.1 387152123 12867192 326944..328650 1 NC_017310.1 KEGG: dde:Dde_2506 sulfate permease; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter 328650 12867192 Deval_0250 Desulfovibrio vulgaris RCH1 sulfate transporter YP_005701059.1 326944 D 573059 CDS YP_005701060.1 387152124 12867193 complement(328963..330102) 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: azl:AZL_c02670 glycosyltransferase group 1 family protein; group 1 glycosyl transferase 330102 12867193 Deval_0251 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005701060.1 328963 R 573059 CDS YP_005701061.1 387152125 12867194 complement(330207..331640) 1 NC_017310.1 TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; KEGG: lip:LI0512 sugar transferases involved in lipopolysaccharide synthesis; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 331640 12867194 Deval_0252 Desulfovibrio vulgaris RCH1 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_005701061.1 330207 R 573059 CDS YP_005701062.1 387152126 12867195 complement(331880..333058) 1 NC_017310.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; helix-hairpin-helix motif; KEGG: dde:Dde_0212 A/G-specific DNA-adenine glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase 333058 12867195 Deval_0253 Desulfovibrio vulgaris RCH1 A/G-specific adenine glycosylase YP_005701062.1 331880 R 573059 CDS YP_005701063.1 387152127 12867196 complement(333336..335075) 1 NC_017310.1 KEGG: dde:Dde_0210 AhpF family protein/thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 335075 12867196 Deval_0254 Desulfovibrio vulgaris RCH1 thioredoxin reductase YP_005701063.1 333336 R 573059 CDS YP_005701064.1 387152128 12867197 335113..335325 1 NC_017310.1 KEGG: dmo:Dmoj_GI11326 GI11326 gene product from transcript GI11326-RA; hypothetical protein 335325 12867197 Deval_0255 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701064.1 335113 D 573059 CDS YP_005701065.1 387152129 12867198 335337..335843 1 NC_017310.1 KEGG: dde:Dde_0209 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; Peptidylprolyl isomerase 335843 12867198 Deval_0256 Desulfovibrio vulgaris RCH1 Peptidylprolyl isomerase YP_005701065.1 335337 D 573059 CDS YP_005701066.1 387152130 12867199 336031..336672 1 NC_017310.1 KEGG: dde:Dde_0332 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 336672 12867199 Deval_0257 Desulfovibrio vulgaris RCH1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_005701066.1 336031 D 573059 CDS YP_005701067.1 387152131 12867200 336662..337441 1 NC_017310.1 KEGG: dde:Dde_0331 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; Imidazole glycerol phosphate synthase cyclase subunit 337441 12867200 Deval_0258 Desulfovibrio vulgaris RCH1 Imidazole glycerol phosphate synthase cyclase subunit YP_005701067.1 336662 D 573059 CDS YP_005701068.1 387152132 12867201 337524..338294 1 NC_017310.1 PFAM: Methyltransferase type 11; KEGG: bur:Bcep18194_A4893 hypothetical protein; type 11 methyltransferase 338294 12867201 Deval_0259 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005701068.1 337524 D 573059 CDS YP_005701069.1 387152133 12867202 complement(338517..339143) 1 NC_017310.1 KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC; molybdenum cofactor biosynthesis protein C 339143 12867202 Deval_0260 Desulfovibrio vulgaris RCH1 molybdenum cofactor biosynthesis protein C YP_005701069.1 338517 R 573059 CDS YP_005701070.1 387152134 12867203 complement(339159..339767) 1 NC_017310.1 KEGG: shw:Sputw3181_2461 putative lipoprotein; hypothetical protein 339767 12867203 Deval_0261 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701070.1 339159 R 573059 CDS YP_005701071.1 387152135 12867204 complement(339792..340856) 1 NC_017310.1 KEGG: dba:Dbac_0792 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 340856 12867204 Deval_0262 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701071.1 339792 R 573059 CDS YP_005701072.1 387152136 12867205 complement(340841..341947) 1 NC_017310.1 PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein; aminoglycoside phosphotransferase 341947 12867205 Deval_0263 Desulfovibrio vulgaris RCH1 aminoglycoside phosphotransferase YP_005701072.1 340841 R 573059 CDS YP_005701073.1 387152137 12867206 342180..342674 1 NC_017310.1 manually curated; KEGG: dal:Dalk_1586 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 342674 12867206 Deval_0264 Desulfovibrio vulgaris RCH1 TraR/DksA family transcriptional regulator YP_005701073.1 342180 D 573059 CDS YP_005701074.1 387152138 12867207 343063..344892 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 344892 12867207 Deval_0265 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005701074.1 343063 D 573059 CDS YP_005701075.1 387152139 12867208 345049..346398 1 NC_017310.1 PFAM: amine oxidase; KEGG: dde:Dde_0216 UDP-galactopyranose mutase; amine oxidase 346398 12867208 Deval_0266 Desulfovibrio vulgaris RCH1 amine oxidase YP_005701075.1 345049 D 573059 CDS YP_005701076.1 387152140 12867209 346497..347567 1 NC_017310.1 PFAM: peptidase M24; creatinase; KEGG: dde:Dde_0217 M24 family peptidase; peptidase M24 347567 12867209 Deval_0267 Desulfovibrio vulgaris RCH1 peptidase M24 YP_005701076.1 346497 D 573059 CDS YP_005701077.1 387152141 12867210 348079..348402 1 NC_017310.1 manually curated; KEGG: dde:Dde_0181 hypothetical protein; hypothetical protein 348402 12867210 Deval_0268 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701077.1 348079 D 573059 CDS YP_005701078.1 387152142 12867211 349013..349798 1 NC_017310.1 KEGG: dde:Dde_0372 hypothetical protein; hypothetical protein 349798 12867211 Deval_0269 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701078.1 349013 D 573059 CDS YP_005701079.1 387152143 12867212 complement(349871..350029) 1 NC_017310.1 PFAM: protein of unknown function DUF1508; KEGG: cbl:CLK_1115 hypothetical protein; hypothetical protein 350029 12867212 Deval_0270 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701079.1 349871 R 573059 CDS YP_005701080.1 387152144 12867213 complement(350208..352253) 1 NC_017310.1 KEGG: dma:DMR_44720 anaerobic ribonucleoside-triphosphate reductase class III; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase 352253 12867213 Deval_0271 Desulfovibrio vulgaris RCH1 anaerobic ribonucleoside-triphosphate reductase YP_005701080.1 350208 R 573059 CDS YP_005701081.1 387152145 12867214 complement(352135..352872) 1 NC_017310.1 manually curated; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; anaerobic ribonucleoside-triphosphate reductase activating protein 352872 12867214 Deval_0272 Desulfovibrio vulgaris RCH1 anaerobic ribonucleoside-triphosphate reductase activating protein YP_005701081.1 352135 R 573059 CDS YP_005701082.1 387152146 12867215 complement(353407..353874) 1 NC_017310.1 PFAM: CheC domain protein; KEGG: dde:Dde_0281 chemotaxis protein CheX, putative; chemotaxis protein CheC 353874 12867215 Deval_0273 Desulfovibrio vulgaris RCH1 chemotaxis protein CheC YP_005701082.1 353407 R 573059 CDS YP_005701083.1 387152147 12867216 complement(354222..354539) 1 NC_017310.1 KEGG: dde:Dde_0282 TPR repeat-containing protein; hypothetical protein 354539 12867216 Deval_0274 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701083.1 354222 R 573059 CDS YP_005701084.1 387152148 12867217 complement(354570..354851) 1 NC_017310.1 KEGG: dde:Dde_0283 hypothetical protein; hypothetical protein 354851 12867217 Deval_0275 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701084.1 354570 R 573059 CDS YP_005701085.1 387152149 12867218 complement(354981..355175) 1 NC_017310.1 KEGG: dde:Dde_0286 ferredoxin II; ferredoxin II 355175 12867218 Deval_0276 Desulfovibrio vulgaris RCH1 ferredoxin II YP_005701085.1 354981 R 573059 CDS YP_005701086.1 387152150 12867219 355269..355886 1 NC_017310.1 KEGG: lip:LI0584 hypothetical protein; hypothetical protein 355886 12867219 Deval_0277 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701086.1 355269 D 573059 CDS YP_005701087.1 387152151 12867220 356007..357503 1 NC_017310.1 KEGG: dde:Dde_0298 flagella basal body rod domain-containing protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-basal body protein 357503 12867220 Deval_0278 Desulfovibrio vulgaris RCH1 flagellar hook-basal body protein YP_005701087.1 356007 D 573059 CDS YP_005701088.1 387152152 12867221 complement(357895..358329) 1 NC_017310.1 PFAM: transmembrane pair domain-containing protein; KEGG: dde:Dde_0348 hypothetical protein; transmembrane pair domain-containing protein 358329 12867221 Deval_0279 Desulfovibrio vulgaris RCH1 transmembrane pair domain-containing protein YP_005701088.1 357895 R 573059 CDS YP_005701089.1 387152153 12867222 358422..359342 1 NC_017310.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dde:Dde_0349 LysR family transcriptional regulator; LysR family transcriptional regulator 359342 12867222 Deval_0280 Desulfovibrio vulgaris RCH1 LysR family transcriptional regulator YP_005701089.1 358422 D 573059 CDS YP_005701090.1 387152154 12867223 complement(359478..360791) 1 NC_017310.1 TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: dde:Dde_0350 ATPase FliI/YscN; SMART: AAA ATPase; FliI/YscN family ATPase 360791 12867223 Deval_0281 Desulfovibrio vulgaris RCH1 FliI/YscN family ATPase YP_005701090.1 359478 R 573059 CDS YP_005701091.1 387152155 12867224 complement(360788..361540) 1 NC_017310.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: dde:Dde_0351 flagellar assembly protein FliH, putative; flagellar assembly protein FliH/type III secretion system HrpE 361540 12867224 Deval_0282 Desulfovibrio vulgaris RCH1 flagellar assembly protein FliH/type III secretion system HrpE YP_005701091.1 360788 R 573059 CDS YP_005701092.1 387152156 12867225 complement(361527..362543) 1 NC_017310.1 KEGG: dde:Dde_0352 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region; flagellar motor switch protein FliG 362543 12867225 Deval_0283 Desulfovibrio vulgaris RCH1 flagellar motor switch protein FliG YP_005701092.1 361527 R 573059 CDS YP_005701093.1 387152157 12867226 complement(362512..364128) 1 NC_017310.1 KEGG: dde:Dde_0353 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; flagellar M-ring protein FliF 364128 12867226 Deval_0284 Desulfovibrio vulgaris RCH1 flagellar M-ring protein FliF YP_005701093.1 362512 R 573059 CDS YP_005701094.1 387152158 12867227 complement(364180..364515) 1 NC_017310.1 KEGG: dde:Dde_0354 flagellar hook-basal body complex protein (FliE); TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 364515 12867227 Deval_0285 Desulfovibrio vulgaris RCH1 flagellar hook-basal body complex subunit FliE YP_005701094.1 364180 R 573059 CDS YP_005701095.1 387152159 12867228 complement(364530..364967) 1 NC_017310.1 KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgC 364967 12867228 Deval_0286 Desulfovibrio vulgaris RCH1 flagellar basal-body rod protein FlgC YP_005701095.1 364530 R 573059 CDS YP_005701096.1 387152160 12867229 complement(364967..365377) 1 NC_017310.1 KEGG: lip:LI0860 flagellar basal body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; flagellar basal-body rod protein FlgB 365377 12867229 Deval_0287 Desulfovibrio vulgaris RCH1 flagellar basal-body rod protein FlgB YP_005701096.1 364967 R 573059 CDS YP_005701097.1 387152161 12867230 366016..366579 1 NC_017310.1 KEGG: dde:Dde_0357 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 366579 12867230 Deval_0288 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701097.1 366016 D 573059 CDS YP_005701098.1 387152162 12867231 complement(367051..368076) 1 NC_017310.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_0109 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 368076 12867231 Deval_0289 Desulfovibrio vulgaris RCH1 NAD-dependent epimerase/dehydratase YP_005701098.1 367051 R 573059 CDS YP_005701099.1 387152163 12867232 complement(368208..368468) 1 NC_017310.1 KEGG: dde:Dde_0288 hypothetical protein; hypothetical protein 368468 12867232 Deval_0290 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701099.1 368208 R 573059 CDS YP_005701100.1 387152164 12867233 368785..369573 1 NC_017310.1 KEGG: dde:Dde_0294 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; transcriptional activator, Baf family 369573 12867233 Deval_0291 Desulfovibrio vulgaris RCH1 transcriptional activator, Baf family YP_005701100.1 368785 D 573059 CDS YP_005701101.1 387152165 12867234 369662..370975 1 NC_017310.1 TIGRFAM: enolase; KEGG: dde:Dde_0295 phosphopyruvate hydratase; PFAM: Enolase-like; enolase 370975 12867234 Deval_0292 Desulfovibrio vulgaris RCH1 enolase YP_005701101.1 369662 D 573059 CDS YP_005701102.1 387152166 12867235 371188..372048 1 NC_017310.1 KEGG: dde:Dde_0296 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase 372048 12867235 Deval_0293 Desulfovibrio vulgaris RCH1 methylenetetrahydrofolate dehydrogenase YP_005701102.1 371188 D 573059 CDS YP_005701103.1 387152167 12867236 372498..373595 1 NC_017310.1 KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD 373595 12867236 Deval_0294 Desulfovibrio vulgaris RCH1 hydrogenase expression/formation protein HypD YP_005701103.1 372498 D 573059 CDS YP_005701104.1 387152168 12867237 373602..374627 1 NC_017310.1 KEGG: dde:Dde_0363 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; hydrogenase expression/formation protein HypE 374627 12867237 Deval_0295 Desulfovibrio vulgaris RCH1 hydrogenase expression/formation protein HypE YP_005701104.1 373602 D 573059 CDS YP_005701105.1 387152169 12867238 complement(374783..376129) 1 NC_017310.1 KEGG: dds:Ddes_0107 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; sugar transferase, PEP-CTERM system associated; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 376129 12867238 Deval_0296 Desulfovibrio vulgaris RCH1 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_005701105.1 374783 R 573059 CDS YP_005701106.1 387152170 12867239 complement(376126..377271) 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dds:Ddes_0108 glycosyl transferase group 1; group 1 glycosyl transferase 377271 12867239 Deval_0297 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005701106.1 376126 R 573059 CDS YP_005701107.1 387152171 12867240 complement(377562..378800) 1 NC_017310.1 KEGG: dma:DMR_27280 response regulator receiver protein; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; SMART: response regulator receiver; putative signal transduction protein 378800 12867240 Deval_0298 Desulfovibrio vulgaris RCH1 putative signal transduction protein YP_005701107.1 377562 R 573059 CDS YP_005701108.1 387152172 12867241 complement(378800..381823) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; KEGG: dma:DMR_38800 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; multi-sensor signal transduction histidine kinase 381823 12867241 Deval_0299 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701108.1 378800 R 573059 CDS YP_005701109.1 387152173 12867242 381933..382589 1 NC_017310.1 KEGG: dma:DMR_20340 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 382589 12867242 Deval_0300 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005701109.1 381933 D 573059 CDS YP_005701110.1 387152174 12867243 382546..383457 1 NC_017310.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: dde:Dde_0366 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 383457 12867243 Deval_0301 Desulfovibrio vulgaris RCH1 D-alanine--D-alanine ligase YP_005701110.1 382546 D 573059 CDS YP_005701111.1 387152175 12867244 383543..385135 1 NC_017310.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase, putative; three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 385135 12867244 Deval_0302 Desulfovibrio vulgaris RCH1 three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_005701111.1 383543 D 573059 CDS YP_005701112.1 387152176 12867245 complement(385336..386676) 1 NC_017310.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like; DegT/DnrJ/EryC1/StrS aminotransferase 386676 12867245 Deval_0303 Desulfovibrio vulgaris RCH1 DegT/DnrJ/EryC1/StrS aminotransferase YP_005701112.1 385336 R 573059 CDS YP_005701113.1 387152177 12867246 complement(386673..388589) 1 NC_017310.1 KEGG: dds:Ddes_2311 hypothetical protein; hypothetical protein 388589 12867246 Deval_0304 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701113.1 386673 R 573059 CDS YP_005701114.1 387152178 12867247 complement(388663..389304) 1 NC_017310.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dds:Ddes_2045 haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase 389304 12867247 Deval_0305 Desulfovibrio vulgaris RCH1 haloacid dehalogenase domain-containing protein hydrolase YP_005701114.1 388663 R 573059 CDS YP_005701115.1 387152179 12867248 complement(389334..390239) 1 NC_017310.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 390239 12867248 Deval_0306 Desulfovibrio vulgaris RCH1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005701115.1 389334 R 573059 CDS YP_005701116.1 387152180 12867249 complement(390382..390975) 1 NC_017310.1 KEGG: dds:Ddes_2046 transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein 390975 12867249 Deval_0307 Desulfovibrio vulgaris RCH1 transferase hexapeptide repeat containing protein YP_005701116.1 390382 R 573059 CDS YP_005701117.1 387152181 12867250 complement(390985..391755) 1 NC_017310.1 KEGG: dde:Dde_3687 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-manno-octulosonate cytidylyltransferase 391755 12867250 Deval_0308 Desulfovibrio vulgaris RCH1 3-deoxy-manno-octulosonate cytidylyltransferase YP_005701117.1 390985 R 573059 CDS YP_005701118.1 387152182 12867251 complement(392068..392982) 1 NC_017310.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_2048 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 392982 12867251 Deval_0309 Desulfovibrio vulgaris RCH1 NAD-dependent epimerase/dehydratase YP_005701118.1 392068 R 573059 CDS YP_005701119.1 387152183 12867252 complement(392985..393767) 1 NC_017310.1 PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein; HpcH/HpaI aldolase 393767 12867252 Deval_0310 Desulfovibrio vulgaris RCH1 HpcH/HpaI aldolase YP_005701119.1 392985 R 573059 CDS YP_005701120.1 387152184 12867253 complement(394235..396049) 1 NC_017310.1 KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 396049 12867253 Deval_0311 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005701120.1 394235 R 573059 CDS YP_005701121.1 387152185 12867254 complement(396396..397934) 1 NC_017310.1 PFAM: polysaccharide biosynthesis protein; KEGG: dds:Ddes_2111 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 397934 12867254 Deval_0312 Desulfovibrio vulgaris RCH1 polysaccharide biosynthesis protein YP_005701121.1 396396 R 573059 CDS YP_005701122.1 387152186 12867255 complement(398230..398901) 1 NC_017310.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: dds:Ddes_0078 transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein 398901 12867255 Deval_0313 Desulfovibrio vulgaris RCH1 transferase hexapeptide repeat containing protein YP_005701122.1 398230 R 573059 CDS YP_005701123.1 387152187 12867256 complement(398920..400611) 1 NC_017310.1 KEGG: dds:Ddes_1889 hypothetical protein; hypothetical protein 400611 12867256 Deval_0314 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701123.1 398920 R 573059 CDS YP_005701124.1 387152188 12867257 complement(400664..401722) 1 NC_017310.1 KEGG: dds:Ddes_1890 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; N-acetylneuraminate synthase 401722 12867257 Deval_0315 Desulfovibrio vulgaris RCH1 N-acetylneuraminate synthase YP_005701124.1 400664 R 573059 CDS YP_005701125.1 387152189 12867258 complement(401759..402442) 1 NC_017310.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: dds:Ddes_2209 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 402442 12867258 Deval_0316 Desulfovibrio vulgaris RCH1 acylneuraminate cytidylyltransferase YP_005701125.1 401759 R 573059 CDS YP_005701126.1 387152190 12867259 complement(402439..404073) 1 NC_017310.1 KEGG: dds:Ddes_2211 cytidine 5'monophosphate N-acetylneuraminic acid synthetase; cytidine 5'monophosphate N-acetylneuraminic acid synthetase 404073 12867259 Deval_0317 Desulfovibrio vulgaris RCH1 cytidine 5'monophosphate N-acetylneuraminic acid synthetase YP_005701126.1 402439 R 573059 CDS YP_005701127.1 387152191 12867260 complement(404081..405262) 1 NC_017310.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dds:Ddes_2212 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 405262 12867260 Deval_0318 Desulfovibrio vulgaris RCH1 DegT/DnrJ/EryC1/StrS aminotransferase YP_005701127.1 404081 R 573059 CDS YP_005701128.1 387152192 12867261 complement(405396..406469) 1 NC_017310.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dds:Ddes_2213 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 406469 12867261 Deval_0319 Desulfovibrio vulgaris RCH1 iron-containing alcohol dehydrogenase YP_005701128.1 405396 R 573059 CDS YP_005701129.1 387152193 12867262 407065..407970 1 NC_017310.1 KEGG: pol:Bpro_0121 hypothetical protein; hypothetical protein 407970 12867262 Deval_0320 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701129.1 407065 D 573059 CDS YP_005701130.1 387152194 12867263 complement(408094..409917) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_0211 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 409917 12867263 Deval_0321 Desulfovibrio vulgaris RCH1 PAS/PAC sensor-containing diguanylate cyclase YP_005701130.1 408094 R 573059 CDS YP_005701131.1 387152195 12867264 410038..410613 1 NC_017310.1 KEGG: dde:Dde_3701 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 410613 12867264 Deval_0322 Desulfovibrio vulgaris RCH1 DNA-3-methyladenine glycosylase I YP_005701131.1 410038 D 573059 CDS YP_005701132.1 387152196 12867265 410667..411542 1 NC_017310.1 KEGG: dde:Dde_3758 hypothetical protein; hypothetical protein 411542 12867265 Deval_0323 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701132.1 410667 D 573059 CDS YP_005701133.1 387152197 12867267 411908..412651 1 NC_017310.1 KEGG: cpy:Cphy_1665 hypothetical protein; hypothetical protein 412651 12867267 Deval_0324 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701133.1 411908 D 573059 CDS YP_005701134.1 387152198 12867268 412934..413260 1 NC_017310.1 PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein; HesB/YadR/YfhF-family protein 413260 12867268 Deval_0325 Desulfovibrio vulgaris RCH1 HesB/YadR/YfhF-family protein YP_005701134.1 412934 D 573059 CDS YP_005701135.1 387152199 12867269 413956..415647 1 NC_017310.1 KEGG: dde:Dde_0398 acetolactate synthase catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 415647 12867269 Deval_0326 Desulfovibrio vulgaris RCH1 acetolactate synthase large subunit YP_005701135.1 413956 D 573059 CDS YP_005701136.1 387152200 12867270 415628..415975 1 NC_017310.1 PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_0399 acetolactate synthase 1 regulatory subunit; amino acid-binding ACT protein 415975 12867270 Deval_0327 Desulfovibrio vulgaris RCH1 amino acid-binding ACT protein YP_005701136.1 415628 D 573059 CDS YP_005701137.1 387152201 12867271 complement(416026..416805) 1 NC_017310.1 PFAM: aminotransferase class IV; KEGG: dde:Dde_3619 hypothetical protein; class IV aminotransferase 416805 12867271 Deval_0328 Desulfovibrio vulgaris RCH1 class IV aminotransferase YP_005701137.1 416026 R 573059 CDS YP_005701138.1 387152202 12867272 complement(416802..418373) 1 NC_017310.1 PFAM: Chorismate binding-like; KEGG: dde:Dde_3618 aminodeoxychorismate synthase, subunit I; chorismate-binding protein 418373 12867272 Deval_0329 Desulfovibrio vulgaris RCH1 chorismate-binding protein YP_005701138.1 416802 R 573059 CDS YP_005701139.1 387152203 12867273 complement(418345..418899) 1 NC_017310.1 PFAM: glutamine amidotransferase class-I; KEGG: dde:Dde_3617 aminodeoxychorismate synthase, glutamine amidotransferase subunit; glutamine amidotransferase 418899 12867273 Deval_0330 Desulfovibrio vulgaris RCH1 glutamine amidotransferase YP_005701139.1 418345 R 573059 CDS YP_005701140.1 387152204 12867274 complement(418896..419651) 1 NC_017310.1 PFAM: protein of unknown function DUF152; KEGG: dde:Dde_3616 hypothetical protein; hypothetical protein 419651 12867274 Deval_0331 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701140.1 418896 R 573059 CDS YP_005701141.1 387152205 12867275 complement(419642..420232) 1 NC_017310.1 KEGG: dma:DMR_23210 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 420232 12867275 Deval_0332 Desulfovibrio vulgaris RCH1 5-formyltetrahydrofolate cyclo-ligase YP_005701141.1 419642 R 573059 CDS YP_005701142.1 387152206 12867276 420463..420663 1 NC_017310.1 hypothetical protein 420663 12867276 Deval_0333 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701142.1 420463 D 573059 CDS YP_005701143.1 387152207 12867277 420814..421494 1 NC_017310.1 PFAM: metallophosphoesterase; KEGG: dds:Ddes_0792 metallophosphoesterase; metallophosphoesterase 421494 12867277 Deval_0334 Desulfovibrio vulgaris RCH1 metallophosphoesterase YP_005701143.1 420814 D 573059 CDS YP_005701144.1 387152208 12867279 422977..424401 1 NC_017310.1 KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 424401 12867279 Deval_0335 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701144.1 422977 D 573059 CDS YP_005701145.1 387152209 12867280 complement(424701..425393) 1 NC_017310.1 KEGG: dsa:Desal_0260 hypothetical protein; hypothetical protein 425393 12867280 Deval_0336 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701145.1 424701 R 573059 CDS YP_005701146.1 387152210 12867281 complement(425451..427862) 1 NC_017310.1 SMART: CoA-binding domain protein; KEGG: dba:Dbac_3164 CoA-binding domain-containing protein; CoA-binding protein 427862 12867281 Deval_0337 Desulfovibrio vulgaris RCH1 CoA-binding protein YP_005701146.1 425451 R 573059 CDS YP_005701147.1 387152211 12867282 complement(427968..430466) 1 NC_017310.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dba:Dbac_3081 indolepyruvate ferredoxin oxidoreductase; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein 430466 12867282 Deval_0338 Desulfovibrio vulgaris RCH1 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein YP_005701147.1 427968 R 573059 CDS YP_005701148.1 387152212 12867283 complement(430551..431780) 1 NC_017310.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rop:ROP_27680 putative Glu/Leu/Phe/Val dehydrogenase family protein; Glu/Leu/Phe/Val dehydrogenase 431780 12867283 Deval_0339 Desulfovibrio vulgaris RCH1 Glu/Leu/Phe/Val dehydrogenase YP_005701148.1 430551 R 573059 CDS YP_005701149.1 387152213 12867284 complement(431802..432068) 1 NC_017310.1 KEGG: dsa:Desal_1364 hypothetical protein; hypothetical protein 432068 12867284 Deval_0340 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701149.1 431802 R 573059 CDS YP_005701150.1 387152214 12867285 complement(432072..432989) 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsa:Desal_1363 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 432989 12867285 Deval_0341 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005701150.1 432072 R 573059 CDS YP_005701151.1 387152215 12867286 complement(433008..433322) 1 NC_017310.1 PFAM: glutaredoxin; KEGG: dsa:Desal_1362 thioredoxin domain protein; glutaredoxin 433322 12867286 Deval_0342 Desulfovibrio vulgaris RCH1 glutaredoxin YP_005701151.1 433008 R 573059 CDS YP_005701152.1 387152216 12867287 complement(433345..434022) 1 NC_017310.1 PFAM: cyclic nucleotide-binding; KEGG: dsa:Desal_1361 transcriptional regulator, TrmB; CarD family transcriptional regulator 434022 12867287 Deval_0343 Desulfovibrio vulgaris RCH1 CarD family transcriptional regulator YP_005701152.1 433345 R 573059 CDS YP_005701153.1 387152217 12867288 complement(434066..435628) 1 NC_017310.1 PFAM: sulfatase; KEGG: dsa:Desal_1360 sulfatase; sulfatase 435628 12867288 Deval_0344 Desulfovibrio vulgaris RCH1 sulfatase YP_005701153.1 434066 R 573059 CDS YP_005701154.1 387152218 12867289 complement(435676..437067) 1 NC_017310.1 KEGG: dsa:Desal_1359 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; Na+/H+ antiporter NhaC 437067 12867289 Deval_0345 Desulfovibrio vulgaris RCH1 Na+/H+ antiporter NhaC YP_005701154.1 435676 R 573059 CDS YP_005701155.1 387152219 12867290 437629..438018 1 NC_017310.1 KEGG: dsa:Desal_2503 hypothetical protein; hypothetical protein 438018 12867290 Deval_0346 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701155.1 437629 D 573059 CDS YP_005701156.1 387152220 12867291 complement(438377..438949) 1 NC_017310.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: dde:Dde_0187 flavoredoxin; flavin reductase domain-containing FMN-binding protein 438949 12867291 Deval_0347 Desulfovibrio vulgaris RCH1 flavin reductase domain-containing FMN-binding protein YP_005701156.1 438377 R 573059 CDS YP_005701157.1 387152221 12867292 439193..439942 1 NC_017310.1 KEGG: dde:Dde_0186 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 439942 12867292 Deval_0348 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005701157.1 439193 D 573059 CDS YP_005701158.1 387152222 12867293 440084..440761 1 NC_017310.1 KEGG: dde:Dde_0185 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 440761 12867293 Deval_0349 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005701158.1 440084 D 573059 CDS YP_005701159.1 387152223 12867294 440770..441537 1 NC_017310.1 KEGG: dde:Dde_0184 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 441537 12867294 Deval_0350 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701159.1 440770 D 573059 CDS YP_005701160.1 387152224 12867295 441537..442211 1 NC_017310.1 KEGG: dde:Dde_0183 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 442211 12867295 Deval_0351 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005701160.1 441537 D 573059 CDS YP_005701161.1 387152225 12867296 442237..443619 1 NC_017310.1 KEGG: dde:Dde_0182 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase 443619 12867296 Deval_0352 Desulfovibrio vulgaris RCH1 D-lactate dehydrogenase YP_005701161.1 442237 D 573059 CDS YP_005701162.1 387152226 12867297 complement(443680..444438) 1 NC_017310.1 PFAM: YaeQ family protein; KEGG: dde:Dde_0512 hypothetical protein; YaeQ family protein 444438 12867297 Deval_0353 Desulfovibrio vulgaris RCH1 YaeQ family protein YP_005701162.1 443680 R 573059 CDS YP_005701163.1 387152227 12867298 444876..446075 1 NC_017310.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_0513 aminotransferase; class I and II aminotransferase 446075 12867298 Deval_0354 Desulfovibrio vulgaris RCH1 class I and II aminotransferase YP_005701163.1 444876 D 573059 CDS YP_005701164.1 387152228 12867299 446329..447066 1 NC_017310.1 KEGG: dde:Dde_0514 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; uracil-DNA glycosylase 447066 12867299 Deval_0355 Desulfovibrio vulgaris RCH1 uracil-DNA glycosylase YP_005701164.1 446329 D 573059 CDS YP_005701165.1 387152229 12867300 complement(447306..448328) 1 NC_017310.1 KEGG: dma:DMR_02290 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 448328 12867300 Deval_0356 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005701165.1 447306 R 573059 CDS YP_005701166.1 387152230 12867301 448556..448975 1 NC_017310.1 PFAM: histidine triad (HIT) protein; KEGG: drt:Dret_2237 histidine triad (HIT) protein; histidine triad (HIT) protein 448975 12867301 Deval_0357 Desulfovibrio vulgaris RCH1 histidine triad (HIT) protein YP_005701166.1 448556 D 573059 CDS YP_005701167.1 387152231 12867302 449003..449290 1 NC_017310.1 KEGG: dde:Dde_0517 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 449290 12867302 Deval_0358 Desulfovibrio vulgaris RCH1 histone family protein DNA-binding protein YP_005701167.1 449003 D 573059 CDS YP_005701168.1 387152232 12867303 complement(449638..450369) 1 NC_017310.1 KEGG: dde:Dde_0519 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein; rare lipoprotein A 450369 12867303 Deval_0359 Desulfovibrio vulgaris RCH1 rare lipoprotein A YP_005701168.1 449638 R 573059 CDS YP_005701169.1 387152233 12867304 complement(450450..452276) 1 NC_017310.1 PFAM: pyruvate carboxyltransferase; Cache domain protein; KEGG: dde:Dde_0520 HMGL-like domain-containing protein; pyruvate carboxyltransferase 452276 12867304 Deval_0360 Desulfovibrio vulgaris RCH1 pyruvate carboxyltransferase YP_005701169.1 450450 R 573059 CDS YP_005701170.1 387152234 12867305 complement(452273..453061) 1 NC_017310.1 KEGG: dde:Dde_0521 hypothetical protein; hypothetical protein 453061 12867305 Deval_0361 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701170.1 452273 R 573059 CDS YP_005701171.1 387152235 12867306 complement(453146..453697) 1 NC_017310.1 KEGG: dde:Dde_0523 hypothetical protein; hypothetical protein 453697 12867306 Deval_0362 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701171.1 453146 R 573059 CDS YP_005701172.1 387152236 12867307 complement(453715..453981) 1 NC_017310.1 KEGG: dde:Dde_0524 hypothetical protein; hypothetical protein 453981 12867307 Deval_0363 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701172.1 453715 R 573059 CDS YP_005701173.1 387152237 12867308 454453..455766 1 NC_017310.1 TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit 455766 12867308 Deval_0364 Desulfovibrio vulgaris RCH1 sulfite reductase, dissimilatory-type alpha subunit YP_005701173.1 454453 D 573059 CDS YP_005701174.1 387152238 12867309 455785..456930 1 NC_017310.1 TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; sulfite reductase, dissimilatory-type beta subunit 456930 12867309 Deval_0365 Desulfovibrio vulgaris RCH1 sulfite reductase, dissimilatory-type beta subunit YP_005701174.1 455785 D 573059 CDS YP_005701175.1 387152239 12867310 456992..457228 1 NC_017310.1 PFAM: Dissimilatory sulfite reductase D; KEGG: dsa:Desal_0789 dissimilatory sulfite reductase D; dissimilatory sulfite reductase D 457228 12867310 Deval_0366 Desulfovibrio vulgaris RCH1 dissimilatory sulfite reductase D YP_005701175.1 456992 D 573059 CDS YP_005701176.1 387152240 12867311 457344..458750 1 NC_017310.1 KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid a,c-diamide synthase 458750 12867311 Deval_0367 Desulfovibrio vulgaris RCH1 cobyrinic acid a,c-diamide synthase YP_005701176.1 457344 D 573059 CDS YP_005701177.1 387152241 12867312 complement(459228..460097) 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0530 hypothetical protein; hypothetical protein 460097 12867312 Deval_0368 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701177.1 459228 R 573059 CDS YP_005701178.1 387152242 12867313 460335..460979 1 NC_017310.1 KEGG: nmi:NMO_1770 rare lipoprotein A family protein; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein; rare lipoprotein A 460979 12867313 Deval_0369 Desulfovibrio vulgaris RCH1 rare lipoprotein A YP_005701178.1 460335 D 573059 CDS YP_005701179.1 387152243 12867314 461070..463217 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold-4 domain protein; KEGG: dde:Dde_0532 response regulator receiver/GGDEF/PAS/PAC domain-containing protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 463217 12867314 Deval_0370 Desulfovibrio vulgaris RCH1 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_005701179.1 461070 D 573059 CDS YP_005701180.1 387152244 12867315 complement(463440..463790) 1 NC_017310.1 KEGG: dde:Dde_0563 hypothetical protein; hypothetical protein 463790 12867315 Deval_0371 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701180.1 463440 R 573059 CDS YP_005701181.1 387152245 12867316 complement(463796..464401) 1 NC_017310.1 KEGG: dde:Dde_0564 hypothetical protein; hypothetical protein 464401 12867316 Deval_0372 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701181.1 463796 R 573059 CDS YP_005701182.1 387152246 12867317 complement(464563..466236) 1 NC_017310.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein; glycosyl transferase family protein 466236 12867317 Deval_0373 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005701182.1 464563 R 573059 CDS YP_005701183.1 387152247 12867318 complement(466253..466918) 1 NC_017310.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dde:Dde_0566 potassium uptake protein TrkA, putative; TrkA-N domain-containing protein 466918 12867318 Deval_0374 Desulfovibrio vulgaris RCH1 TrkA-N domain-containing protein YP_005701183.1 466253 R 573059 CDS YP_005701184.1 387152248 12867319 complement(466976..468322) 1 NC_017310.1 KEGG: dde:Dde_0567 TrkH family potassium uptake protein; PFAM: cation transporter; H(+)-transporting two-sector ATPase 468322 12867319 Deval_0375 Desulfovibrio vulgaris RCH1 H(+)-transporting two-sector ATPase YP_005701184.1 466976 R 573059 CDS YP_005701185.1 387152249 12867320 468432..469751 1 NC_017310.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: dsa:Desal_0725 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malic protein NAD-binding protein 469751 12867320 Deval_0376 Desulfovibrio vulgaris RCH1 malic protein NAD-binding protein YP_005701185.1 468432 D 573059 CDS YP_005701186.1 387152250 12867321 469809..471332 1 NC_017310.1 KEGG: dde:Dde_0568 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; leucyl aminopeptidase 471332 12867321 Deval_0377 Desulfovibrio vulgaris RCH1 leucyl aminopeptidase YP_005701186.1 469809 D 573059 CDS YP_005701187.1 387152251 12867322 complement(471587..472705) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 472705 12867322 Deval_0378 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005701187.1 471587 R 573059 CDS YP_005701188.1 387152252 12867323 473282..475201 1 NC_017310.1 KEGG: dds:Ddes_0901 arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; arginine decarboxylase 475201 12867323 Deval_0379 Desulfovibrio vulgaris RCH1 arginine decarboxylase YP_005701188.1 473282 D 573059 CDS YP_005701189.1 387152253 12867324 475450..476640 1 NC_017310.1 PFAM: Saccharopine dehydrogenase; KEGG: dba:Dbac_2320 saccharopine dehydrogenase; saccharopine dehydrogenase 476640 12867324 Deval_0380 Desulfovibrio vulgaris RCH1 saccharopine dehydrogenase YP_005701189.1 475450 D 573059 CDS YP_005701190.1 387152254 12867325 476918..478090 1 NC_017310.1 KEGG: dde:Dde_0573 carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; carboxynorspermidine decarboxylase 478090 12867325 Deval_0381 Desulfovibrio vulgaris RCH1 carboxynorspermidine decarboxylase YP_005701190.1 476918 D 573059 CDS YP_005701191.1 387152255 12867326 478132..478293 1 NC_017310.1 KEGG: dsi:Dsim_GD13772 GD13772 gene product from transcript GD13772-RA; hypothetical protein 478293 12867326 Deval_0382 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701191.1 478132 D 573059 CDS YP_005701192.1 387152256 12867327 478357..478521 1 NC_017310.1 KEGG: bid:Bind_2238 (glutamate--ammonia-ligase) adenylyltransferase; hypothetical protein 478521 12867327 Deval_0383 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701192.1 478357 D 573059 CDS YP_005701193.1 387152257 12867328 478532..479404 1 NC_017310.1 KEGG: dde:Dde_0574 agmatinase, putative; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; agmatinase 479404 12867328 Deval_0384 Desulfovibrio vulgaris RCH1 agmatinase YP_005701193.1 478532 D 573059 CDS YP_005701194.1 387152258 12867329 complement(479712..482909) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; PAS fold-4 domain protein; GGDEF domain containing protein; KEGG: slt:Slit_2517 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 482909 12867329 Deval_0385 Desulfovibrio vulgaris RCH1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_005701194.1 479712 R 573059 CDS YP_005701195.1 387152259 12867330 483089..483508 1 NC_017310.1 PFAM: UspA domain-containing protein; KEGG: dde:Dde_0589 universal stress protein; UspA domain-containing protein 483508 12867330 Deval_0386 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005701195.1 483089 D 573059 CDS YP_005701196.1 387152260 12867331 483661..485106 1 NC_017310.1 KEGG: dde:Dde_0590 cardiolipin synthetase 2; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; phospholipase D/Transphosphatidylase 485106 12867331 Deval_0387 Desulfovibrio vulgaris RCH1 phospholipase D/Transphosphatidylase YP_005701196.1 483661 D 573059 CDS YP_005701197.1 387152261 12867332 485291..486181 1 NC_017310.1 KEGG: dde:Dde_0591 hypothetical protein; hypothetical protein 486181 12867332 Deval_0388 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701197.1 485291 D 573059 CDS YP_005701198.1 387152262 12867333 complement(486389..487741) 1 NC_017310.1 KEGG: mfe:Mefer_1074 chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate ion transporter family chromate transporter 487741 12867333 Deval_0389 Desulfovibrio vulgaris RCH1 chromate ion transporter family chromate transporter YP_005701198.1 486389 R 573059 CDS YP_005701199.1 387152263 12867334 488219..488539 1 NC_017310.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 488539 12867334 Deval_0390 Desulfovibrio vulgaris RCH1 antibiotic biosynthesis monooxygenase YP_005701199.1 488219 D 573059 CDS YP_005701200.1 387152264 12867335 complement(488611..488703) 1 NC_017310.1 hypothetical protein 488703 12867335 Deval_0391 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701200.1 488611 R 573059 CDS YP_005701201.1 387152265 12867336 complement(488933..489334) 1 NC_017310.1 KEGG: dma:DMR_02780 Ech hydrogenase subunit EchF; Ech hydrogenase subunit EchF 489334 12867336 Deval_0392 Desulfovibrio vulgaris RCH1 Ech hydrogenase subunit EchF YP_005701201.1 488933 R 573059 CDS YP_005701202.1 387152266 12867337 complement(489353..490429) 1 NC_017310.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dma:DMR_02770 Ech hydrogenase subunit EchE; NADH-ubiquinone oxidoreductase chain 49kDa 490429 12867337 Deval_0393 Desulfovibrio vulgaris RCH1 NADH-ubiquinone oxidoreductase chain 49kDa YP_005701202.1 489353 R 573059 CDS YP_005701203.1 387152267 12867338 complement(490442..490834) 1 NC_017310.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dma:DMR_02760 putative Ech hydrogenase subunit EchD; NADH dehydrogenase (ubiquinone) 30 kDa subunit 490834 12867338 Deval_0394 Desulfovibrio vulgaris RCH1 NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_005701203.1 490442 R 573059 CDS YP_005701204.1 387152268 12867339 complement(490870..491343) 1 NC_017310.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dma:DMR_02750 Ech hydrogenase subunit EchC; NADH ubiquinone oxidoreductase 20 kDa subunit 491343 12867339 Deval_0395 Desulfovibrio vulgaris RCH1 NADH ubiquinone oxidoreductase 20 kDa subunit YP_005701204.1 490870 R 573059 CDS YP_005701205.1 387152269 12867340 complement(491356..492204) 1 NC_017310.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dma:DMR_02740 Ech hydrogenase subunit EchB; respiratory-chain NADH dehydrogenase subunit 1 492204 12867340 Deval_0396 Desulfovibrio vulgaris RCH1 respiratory-chain NADH dehydrogenase subunit 1 YP_005701205.1 491356 R 573059 CDS YP_005701206.1 387152270 12867341 complement(492204..494150) 1 NC_017310.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: dma:DMR_02730 Ech hydrogenase subunit EchA; NADH/ubiquinone/plastoquinone 494150 12867341 Deval_0397 Desulfovibrio vulgaris RCH1 NADH/ubiquinone/plastoquinone YP_005701206.1 492204 R 573059 CDS YP_005701207.1 387152271 12867342 494461..495165 1 NC_017310.1 PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator; Transcriptional regulator TetR 495165 12867342 Deval_0398 Desulfovibrio vulgaris RCH1 Transcriptional regulator TetR YP_005701207.1 494461 D 573059 CDS YP_005701208.1 387152272 12867343 495395..496780 1 NC_017310.1 KEGG: dds:Ddes_0900 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 496780 12867343 Deval_0399 Desulfovibrio vulgaris RCH1 RND family efflux transporter MFP subunit YP_005701208.1 495395 D 573059 CDS YP_005701209.1 387152273 12867344 496777..499902 1 NC_017310.1 PFAM: acriflavin resistance protein; KEGG: gur:Gura_2371 acriflavin resistance protein; acriflavin resistance protein 499902 12867344 Deval_0400 Desulfovibrio vulgaris RCH1 acriflavin resistance protein YP_005701209.1 496777 D 573059 CDS YP_005701210.1 387152274 12867345 499937..500227 1 NC_017310.1 PFAM: YCII-related; KEGG: dma:DMR_24110 hypothetical protein; hypothetical protein 500227 12867345 Deval_0401 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701210.1 499937 D 573059 CDS YP_005701211.1 387152275 12867346 500696..502027 1 NC_017310.1 KEGG: tai:Taci_0502 protein of unknown function DUF1063; hypothetical protein 502027 12867346 Deval_0402 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701211.1 500696 D 573059 CDS YP_005701212.1 387152276 12867347 complement(502178..503905) 1 NC_017310.1 TIGRFAM: adenine deaminase; KEGG: amt:Amet_4567 adenine deaminase; PFAM: amidohydrolase; adenine deaminase 503905 12867347 Deval_0403 Desulfovibrio vulgaris RCH1 adenine deaminase YP_005701212.1 502178 R 573059 CDS YP_005701213.1 387152277 12867348 complement(504352..505548) 1 NC_017310.1 KEGG: dba:Dbac_2706 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; PhoH family protein 505548 12867348 Deval_0404 Desulfovibrio vulgaris RCH1 PhoH family protein YP_005701213.1 504352 R 573059 CDS YP_005701214.1 387152278 12867349 complement(505761..506516) 1 NC_017310.1 KEGG: afw:Anae109_4029 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; Exonuclease RNase T and DNA polymerase III 506516 12867349 Deval_0405 Desulfovibrio vulgaris RCH1 Exonuclease RNase T and DNA polymerase III YP_005701214.1 505761 R 573059 CDS YP_005701215.1 387152279 12867350 complement(506503..508725) 1 NC_017310.1 KEGG: afw:Anae109_0817 CBS domain-containing protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; SMART: CBS domain containing protein; putative signal transduction protein 508725 12867350 Deval_0406 Desulfovibrio vulgaris RCH1 putative signal transduction protein YP_005701215.1 506503 R 573059 CDS YP_005701216.1 387152280 12867351 complement(508734..510458) 1 NC_017310.1 KEGG: dba:Dbac_1022 cyclic nucleotide-binding protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; putative signal transduction protein 510458 12867351 Deval_0407 Desulfovibrio vulgaris RCH1 putative signal transduction protein YP_005701216.1 508734 R 573059 CDS YP_005701217.1 387152281 12867352 complement(510607..512154) 1 NC_017310.1 KEGG: dba:Dbac_1021 SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SSS sodium solute transporter superfamily protein 512154 12867352 Deval_0408 Desulfovibrio vulgaris RCH1 SSS sodium solute transporter superfamily protein YP_005701217.1 510607 R 573059 CDS YP_005701218.1 387152282 12867353 complement(512147..512464) 1 NC_017310.1 PFAM: protein of unknown function DUF485; KEGG: dma:DMR_19740 hypothetical membrane protein; hypothetical protein 512464 12867353 Deval_0409 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701218.1 512147 R 573059 CDS YP_005701219.1 387152283 12867354 512858..514003 1 NC_017310.1 KEGG: dds:Ddes_0412 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; GDP-mannose 4,6-dehydratase 514003 12867354 Deval_0410 Desulfovibrio vulgaris RCH1 GDP-mannose 4,6-dehydratase YP_005701219.1 512858 D 573059 CDS YP_005701220.1 387152284 12867355 complement(513991..518598) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; ATP-binding region ATPase domain protein; response regulator receiver; MCP methyltransferase CheR-type; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_36600 putative chemotaxis CheB/CheR fusion protein; SMART: MCP methyltransferase CheR-type; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; signal transduction histidine kinase with CheB and CheR activity 518598 12867355 Deval_0411 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase with CheB and CheR activity YP_005701220.1 513991 R 573059 CDS YP_005701221.1 387152285 12867357 519381..520325 1 NC_017310.1 KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF 520325 12867357 Deval_0412 Desulfovibrio vulgaris RCH1 riboflavin biosynthesis protein RibF YP_005701221.1 519381 D 573059 CDS YP_005701222.1 387152286 12867358 520330..522141 1 NC_017310.1 PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; KEGG: dde:Dde_3504 chloride channel family protein; Cl- channel voltage-gated family protein 522141 12867358 Deval_0413 Desulfovibrio vulgaris RCH1 Cl- channel voltage-gated family protein YP_005701222.1 520330 D 573059 CDS YP_005701223.1 387152287 12867359 complement(522281..523717) 1 NC_017310.1 PFAM: methyltransferase small; KEGG: drt:Dret_0713 methyltransferase small; methyltransferase small 523717 12867359 Deval_0414 Desulfovibrio vulgaris RCH1 methyltransferase small YP_005701223.1 522281 R 573059 CDS YP_005701224.1 387152288 12867360 523934..527317 1 NC_017310.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 527317 12867360 Deval_0415 Desulfovibrio vulgaris RCH1 UvrD/REP helicase YP_005701224.1 523934 D 573059 CDS YP_005701225.1 387152289 12867361 complement(527428..527577) 1 NC_017310.1 KEGG: dde:Dde_3498 hypothetical protein; hypothetical protein 527577 12867361 Deval_0416 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701225.1 527428 R 573059 CDS YP_005701226.1 387152290 12867362 527726..528493 1 NC_017310.1 KEGG: dde:Dde_3496 hypothetical protein; hypothetical protein 528493 12867362 Deval_0417 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701226.1 527726 D 573059 CDS YP_005701227.1 387152291 12867363 528515..529522 1 NC_017310.1 PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein; phosphoesterase RecJ domain-containing protein 529522 12867363 Deval_0418 Desulfovibrio vulgaris RCH1 phosphoesterase RecJ domain-containing protein YP_005701227.1 528515 D 573059 CDS YP_005701228.1 387152292 12867364 complement(529678..530928) 1 NC_017310.1 KEGG: pth:PTH_0666 signaling protein; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 530928 12867364 Deval_0419 Desulfovibrio vulgaris RCH1 diguanylate phosphodiesterase YP_005701228.1 529678 R 573059 CDS YP_005701229.1 387152293 12867365 531920..532021 1 NC_017310.1 hypothetical protein 532021 12867365 Deval_0420 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701229.1 531920 D 573059 CDS YP_005701230.1 387152294 12867366 532236..533036 1 NC_017310.1 TIGRFAM: predicted phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: dde:Dde_3489 fructose-bisphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase 533036 12867366 Deval_0421 Desulfovibrio vulgaris RCH1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_005701230.1 532236 D 573059 CDS YP_005701231.1 387152295 12867367 533045..534016 1 NC_017310.1 PFAM: 3-dehydroquinate synthase; KEGG: dde:Dde_3488 3-dehydroquinate synthase; 3-dehydroquinate synthase 534016 12867367 Deval_0422 Desulfovibrio vulgaris RCH1 3-dehydroquinate synthase YP_005701231.1 533045 D 573059 CDS YP_005701232.1 387152296 12867368 534019..535194 1 NC_017310.1 KEGG: dde:Dde_3487 prephenate dehydratase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; chorismate mutase 535194 12867368 Deval_0423 Desulfovibrio vulgaris RCH1 chorismate mutase YP_005701232.1 534019 D 573059 CDS YP_005701233.1 387152297 12868821 535194..536513 1 NC_017310.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: dde:Dde_3486 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase 536513 12868821 Deval_0424 Desulfovibrio vulgaris RCH1 3-phosphoshikimate 1-carboxyvinyltransferase YP_005701233.1 535194 D 573059 CDS YP_005701234.1 387152298 12868822 536510..537286 1 NC_017310.1 PFAM: Prephenate dehydrogenase; KEGG: dde:Dde_3485 prephenate dehydrogenase; prephenate dehydrogenase 537286 12868822 Deval_0425 Desulfovibrio vulgaris RCH1 prephenate dehydrogenase YP_005701234.1 536510 D 573059 CDS YP_005701235.1 387152299 12868823 537418..539016 1 NC_017310.1 KEGG: dde:Dde_3484 anthranilate synthase, component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; anthranilate synthase 539016 12868823 Deval_0426 Desulfovibrio vulgaris RCH1 anthranilate synthase YP_005701235.1 537418 D 573059 CDS YP_005701236.1 387152300 12868824 538997..539626 1 NC_017310.1 KEGG: dds:Ddes_1591 anthranilate phosphoribosyltransferase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; glutamine amidotransferase of anthranilate synthase 539626 12868824 Deval_0427 Desulfovibrio vulgaris RCH1 glutamine amidotransferase of anthranilate synthase YP_005701236.1 538997 D 573059 CDS YP_005701237.1 387152301 12868825 539623..540621 1 NC_017310.1 TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 540621 12868825 Deval_0428 Desulfovibrio vulgaris RCH1 anthranilate phosphoribosyltransferase YP_005701237.1 539623 D 573059 CDS YP_005701238.1 387152302 12868826 540614..541387 1 NC_017310.1 KEGG: amu:Amuc_1533 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; indole-3-glycerol-phosphate synthase 541387 12868826 Deval_0429 Desulfovibrio vulgaris RCH1 indole-3-glycerol-phosphate synthase YP_005701238.1 540614 D 573059 CDS YP_005701239.1 387152303 12868827 541384..542289 1 NC_017310.1 KEGG: dma:DMR_05270 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 542289 12868827 Deval_0430 Desulfovibrio vulgaris RCH1 phosphoribosylanthranilate isomerase YP_005701239.1 541384 D 573059 CDS YP_005701240.1 387152304 12868828 542286..543473 1 NC_017310.1 KEGG: dds:Ddes_1588 tryptophan synthase, beta subunit; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; tryptophan synthase subunit beta 543473 12868828 Deval_0431 Desulfovibrio vulgaris RCH1 tryptophan synthase subunit beta YP_005701240.1 542286 D 573059 CDS YP_005701241.1 387152305 12868829 543470..544243 1 NC_017310.1 TIGRFAM: tryptophan synthase, alpha subunit; KEGG: dde:Dde_3478 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 544243 12868829 Deval_0432 Desulfovibrio vulgaris RCH1 tryptophan synthase subunit alpha YP_005701241.1 543470 D 573059 CDS YP_005701242.1 387152306 12868831 complement(545007..546056) 1 NC_017310.1 PFAM: Integrase catalytic region; KEGG: glo:Glov_1005 integrase catalytic region; integrase catalytic subunit 546056 12868831 Deval_0434 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005701242.1 545007 R 573059 CDS YP_005701243.1 387152307 12868832 546932..548074 1 NC_017310.1 KEGG: dde:Dde_3476 isocitrate dehydrogenase (NADP); PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 548074 12868832 Deval_0435 Desulfovibrio vulgaris RCH1 isocitrate dehydrogenase YP_005701243.1 546932 D 573059 CDS YP_005701244.1 387152308 12868833 548173..549036 1 NC_017310.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_3469 serine/threonine protein phosphatase family protein; metallophosphoesterase 549036 12868833 Deval_0436 Desulfovibrio vulgaris RCH1 metallophosphoesterase YP_005701244.1 548173 D 573059 CDS YP_005701245.1 387152309 12868834 549160..550659 1 NC_017310.1 KEGG: dde:Dde_3468 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; serine/threonine protein kinase 550659 12868834 Deval_0437 Desulfovibrio vulgaris RCH1 serine/threonine protein kinase YP_005701245.1 549160 D 573059 CDS YP_005701246.1 387152310 12868835 550712..551443 1 NC_017310.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein; hypothetical protein 551443 12868835 Deval_0438 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701246.1 550712 D 573059 CDS YP_005701247.1 387152311 12868836 551668..552639 1 NC_017310.1 KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6-epimerase precursor; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; ADP-L-glycero-D-manno-heptose-6-epimerase 552639 12868836 Deval_0439 Desulfovibrio vulgaris RCH1 ADP-L-glycero-D-manno-heptose-6-epimerase YP_005701247.1 551668 D 573059 CDS YP_005701248.1 387152312 12868837 complement(552760..554208) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3465 putative PAS/PAC sensor protein; SMART: response regulator receiver; PAS domain containing protein; multi-sensor signal transduction histidine kinase 554208 12868837 Deval_0440 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701248.1 552760 R 573059 CDS YP_005701249.1 387152313 12868838 complement(554508..556742) 1 NC_017310.1 KEGG: dde:Dde_3464 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; DNA mismatch repair protein MutL 556742 12868838 Deval_0441 Desulfovibrio vulgaris RCH1 DNA mismatch repair protein MutL YP_005701249.1 554508 R 573059 CDS YP_005701250.1 387152314 12868839 556945..557739 1 NC_017310.1 KEGG: dsa:Desal_0914 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 557739 12868839 Deval_0442 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701250.1 556945 D 573059 CDS YP_005701251.1 387152315 12868840 557736..558521 1 NC_017310.1 PFAM: Conserved hypothetical protein CHP00245; KEGG: dde:Dde_3461 hypothetical protein; hypothetical protein 558521 12868840 Deval_0443 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701251.1 557736 D 573059 CDS YP_005701252.1 387152316 12868841 558565..558894 1 NC_017310.1 KEGG: dde:Dde_3460 hypothetical protein; hypothetical protein 558894 12868841 Deval_0444 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701252.1 558565 D 573059 CDS YP_005701253.1 387152317 12868842 complement(559194..559694) 1 NC_017310.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 559694 12868842 Deval_0445 Desulfovibrio vulgaris RCH1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_005701253.1 559194 R 573059 CDS YP_005701254.1 387152318 12868843 complement(559708..560982) 1 NC_017310.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine--glycine ligase 560982 12868843 Deval_0446 Desulfovibrio vulgaris RCH1 phosphoribosylamine--glycine ligase YP_005701254.1 559708 R 573059 CDS YP_005701255.1 387152319 12868844 561150..562448 1 NC_017310.1 KEGG: dde:Dde_3457 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; phenylacetate--CoA ligase 562448 12868844 Deval_0447 Desulfovibrio vulgaris RCH1 phenylacetate--CoA ligase YP_005701255.1 561150 D 573059 CDS YP_005701256.1 387152320 12868846 564387..565592 1 NC_017310.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_3456 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 565592 12868846 Deval_0449 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005701256.1 564387 D 573059 CDS YP_005701257.1 387152321 12868847 complement(565828..566892) 1 NC_017310.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: dma:DMR_05160 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 566892 12868847 Deval_0450 Desulfovibrio vulgaris RCH1 N-acetyl-gamma-glutamyl-phosphate reductase YP_005701257.1 565828 R 573059 CDS YP_005701258.1 387152322 12868848 complement(566902..567210) 1 NC_017310.1 PFAM: Domain of unknown function DUF1844; KEGG: dde:Dde_3453 hypothetical protein; hypothetical protein 567210 12868848 Deval_0451 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701258.1 566902 R 573059 CDS YP_005701259.1 387152323 12868849 complement(567276..568445) 1 NC_017310.1 PFAM: aminotransferase class V; KEGG: dde:Dde_3452 aminotransferase, class V; class V aminotransferase 568445 12868849 Deval_0452 Desulfovibrio vulgaris RCH1 class V aminotransferase YP_005701259.1 567276 R 573059 CDS YP_005701260.1 387152324 12868850 complement(568456..569652) 1 NC_017310.1 KEGG: dde:Dde_3451 SAM-dependent methyltransferase; SAM-dependent methyltransferase 569652 12868850 Deval_0453 Desulfovibrio vulgaris RCH1 SAM-dependent methyltransferase YP_005701260.1 568456 R 573059 CDS YP_005701261.1 387152325 12868851 complement(569845..572892) 1 NC_017310.1 TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; KEGG: dde:Dde_3450 DNA polymerase I; SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; DNA polymerase I 572892 12868851 Deval_0454 Desulfovibrio vulgaris RCH1 DNA polymerase I YP_005701261.1 569845 R 573059 CDS YP_005701262.1 387152326 12868852 complement(572999..573247) 1 NC_017310.1 KEGG: dde:Dde_3449 hypothetical protein; hypothetical protein 573247 12868852 Deval_0455 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701262.1 572999 R 573059 CDS YP_005701263.1 387152327 12868853 complement(573326..574684) 1 NC_017310.1 KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein, putative; iron-sulfur cluster-binding protein, putative 574684 12868853 Deval_0456 Desulfovibrio vulgaris RCH1 iron-sulfur cluster-binding protein, putative YP_005701263.1 573326 R 573059 CDS YP_005701264.1 387152328 12868854 complement(575061..575456) 1 NC_017310.1 PFAM: protein of unknown function UPF0047; KEGG: dsa:Desal_0262 protein of unknown function UPF0047; hypothetical protein 575456 12868854 Deval_0457 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701264.1 575061 R 573059 CDS YP_005701265.1 387152329 12868855 575806..577734 1 NC_017310.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; selenocysteine-specific translation elongation factor 577734 12868855 Deval_0458 Desulfovibrio vulgaris RCH1 selenocysteine-specific translation elongation factor YP_005701265.1 575806 D 573059 CDS YP_005701266.1 387152330 12868856 complement(578079..578900) 1 NC_017310.1 KEGG: dds:Ddes_0053 hypothetical protein; hypothetical protein 578900 12868856 Deval_0459 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701266.1 578079 R 573059 CDS YP_005701267.1 387152331 12868857 complement(578936..579328) 1 NC_017310.1 manually curated; KEGG: dde:Dde_3169 hypothetical protein; hypothetical protein 579328 12868857 Deval_0460 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701267.1 578936 R 573059 CDS YP_005701268.1 387152332 12868858 complement(579529..581811) 1 NC_017310.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; polyribonucleotide nucleotidyltransferase 581811 12868858 Deval_0461 Desulfovibrio vulgaris RCH1 polyribonucleotide nucleotidyltransferase YP_005701268.1 579529 R 573059 CDS YP_005701269.1 387152333 12868859 complement(581983..582252) 1 NC_017310.1 KEGG: dds:Ddes_0055 ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; 30S ribosomal protein S15 582252 12868859 Deval_0462 Desulfovibrio vulgaris RCH1 30S ribosomal protein S15 YP_005701269.1 581983 R 573059 CDS YP_005701270.1 387152334 12868860 complement(582277..583203) 1 NC_017310.1 KEGG: dde:Dde_3165 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B 583203 12868860 Deval_0463 Desulfovibrio vulgaris RCH1 tRNA pseudouridine synthase B YP_005701270.1 582277 R 573059 CDS YP_005701271.1 387152335 12868861 complement(583196..584197) 1 NC_017310.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein; phosphoesterase RecJ domain-containing protein 584197 12868861 Deval_0464 Desulfovibrio vulgaris RCH1 phosphoesterase RecJ domain-containing protein YP_005701271.1 583196 R 573059 CDS YP_005701272.1 387152336 12868862 complement(584215..584505) 1 NC_017310.1 PFAM: protein of unknown function DUF503; KEGG: dde:Dde_3163 hypothetical protein; hypothetical protein 584505 12868862 Deval_0465 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701272.1 584215 R 573059 CDS YP_005701273.1 387152337 12868863 complement(584609..587848) 1 NC_017310.1 KEGG: dds:Ddes_0059 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; translation initiation factor IF-2 587848 12868863 Deval_0466 Desulfovibrio vulgaris RCH1 translation initiation factor IF-2 YP_005701273.1 584609 R 573059 CDS YP_005701274.1 387152338 12868864 complement(587852..588082) 1 NC_017310.1 PFAM: protein of unknown function DUF448; KEGG: drt:Dret_0496 protein of unknown function DUF448; hypothetical protein 588082 12868864 Deval_0467 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701274.1 587852 R 573059 CDS YP_005701275.1 387152339 12868865 complement(588086..589372) 1 NC_017310.1 KEGG: dde:Dde_3161 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; transcription termination factor NusA 589372 12868865 Deval_0468 Desulfovibrio vulgaris RCH1 transcription termination factor NusA YP_005701275.1 588086 R 573059 CDS YP_005701276.1 387152340 12868866 complement(589413..589931) 1 NC_017310.1 PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein; hypothetical protein 589931 12868866 Deval_0469 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701276.1 589413 R 573059 CDS YP_005701277.1 387152341 12868867 590273..591055 1 NC_017310.1 KEGG: dde:Dde_3159 flagellar basal-body rod protein, putative; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgF 591055 12868867 Deval_0470 Desulfovibrio vulgaris RCH1 flagellar basal-body rod protein FlgF YP_005701277.1 590273 D 573059 CDS YP_005701278.1 387152342 12868868 591112..591894 1 NC_017310.1 KEGG: dde:Dde_3158 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgG 591894 12868868 Deval_0471 Desulfovibrio vulgaris RCH1 flagellar basal-body rod protein FlgG YP_005701278.1 591112 D 573059 CDS YP_005701279.1 387152343 12868869 591902..592876 1 NC_017310.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: dds:Ddes_0393 flagella basal body P-ring formation protein FlgA; flagellar basal body P-ring formation protein FlgA 592876 12868869 Deval_0472 Desulfovibrio vulgaris RCH1 flagellar basal body P-ring formation protein FlgA YP_005701279.1 591902 D 573059 CDS YP_005701280.1 387152344 12868870 592895..593611 1 NC_017310.1 PFAM: flagellar L-ring protein; KEGG: dde:Dde_3156 flagellar basal body L-ring protein; flagellar L-ring protein 593611 12868870 Deval_0473 Desulfovibrio vulgaris RCH1 flagellar L-ring protein YP_005701280.1 592895 D 573059 CDS YP_005701281.1 387152345 12868871 593621..594757 1 NC_017310.1 PFAM: flagellar P-ring protein; KEGG: dds:Ddes_2004 flagellar P-ring protein; flagellar P-ring protein 594757 12868871 Deval_0474 Desulfovibrio vulgaris RCH1 flagellar P-ring protein YP_005701281.1 593621 D 573059 CDS YP_005701282.1 387152346 12868872 594759..596591 1 NC_017310.1 PFAM: Peptidase M23; Flagellar protein FlgJ-like; KEGG: dde:Dde_3154 membrane proteins, metalloendopeptidase-like; peptidase M23 596591 12868872 Deval_0475 Desulfovibrio vulgaris RCH1 peptidase M23 YP_005701282.1 594759 D 573059 CDS YP_005701283.1 387152347 12868873 596615..597079 1 NC_017310.1 PFAM: FlgN family protein; KEGG: lip:LI0746 hypothetical protein; FlgN family protein 597079 12868873 Deval_0476 Desulfovibrio vulgaris RCH1 FlgN family protein YP_005701283.1 596615 D 573059 CDS YP_005701284.1 387152348 12868874 597079..599175 1 NC_017310.1 KEGG: dde:Dde_3152 flagellar hook-associated protein; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-associated protein FlgK 599175 12868874 Deval_0477 Desulfovibrio vulgaris RCH1 flagellar hook-associated protein FlgK YP_005701284.1 597079 D 573059 CDS YP_005701285.1 387152349 12868875 599187..600758 1 NC_017310.1 KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; flagellar hook-associated protein 3 600758 12868875 Deval_0478 Desulfovibrio vulgaris RCH1 flagellar hook-associated protein 3 YP_005701285.1 599187 D 573059 CDS YP_005701286.1 387152350 12868876 600772..601008 1 NC_017310.1 KEGG: dde:Dde_3150 carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; carbon storage regulator CsrA 601008 12868876 Deval_0479 Desulfovibrio vulgaris RCH1 carbon storage regulator CsrA YP_005701286.1 600772 D 573059 CDS YP_005701287.1 387152351 12868877 600987..601508 1 NC_017310.1 PFAM: protein of unknown function DUF180; KEGG: dde:Dde_3149 flagellar assembly protein FliW; hypothetical protein 601508 12868877 Deval_0480 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701287.1 600987 D 573059 CDS YP_005701288.1 387152352 12868878 complement(601859..602173) 1 NC_017310.1 KEGG: dde:Dde_0638 putative anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein; anti-sigma-28 factor FlgM family protein 602173 12868878 Deval_0481 Desulfovibrio vulgaris RCH1 anti-sigma-28 factor FlgM family protein YP_005701288.1 601859 R 573059 CDS YP_005701289.1 387152353 12868879 complement(602199..602615) 1 NC_017310.1 KEGG: dde:Dde_0639 hypothetical protein; hypothetical protein 602615 12868879 Deval_0482 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701289.1 602199 R 573059 CDS YP_005701290.1 387152354 12868880 602833..603501 1 NC_017310.1 KEGG: dal:Dalk_1623 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 603501 12868880 Deval_0483 Desulfovibrio vulgaris RCH1 MarR family transcriptional regulator YP_005701290.1 602833 D 573059 CDS YP_005701291.1 387152355 12868881 603494..604897 1 NC_017310.1 PFAM: major facilitator superfamily MFS_1; KEGG: dma:DMR_05200 putative drug resistance transporter; major facilitator superfamily protein 604897 12868881 Deval_0484 Desulfovibrio vulgaris RCH1 major facilitator superfamily protein YP_005701291.1 603494 D 573059 CDS YP_005701292.1 387152356 12868882 604998..605630 1 NC_017310.1 KEGG: dde:Dde_0640 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 605630 12868882 Deval_0485 Desulfovibrio vulgaris RCH1 maf protein YP_005701292.1 604998 D 573059 CDS YP_005701293.1 387152357 12868883 605623..606102 1 NC_017310.1 PFAM: phosphatidylglycerophosphatase A; KEGG: dde:Dde_0641 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 606102 12868883 Deval_0486 Desulfovibrio vulgaris RCH1 phosphatidylglycerophosphatase A YP_005701293.1 605623 D 573059 CDS YP_005701294.1 387152358 12868884 complement(606203..606655) 1 NC_017310.1 KEGG: dde:Dde_0647 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator 606655 12868884 Deval_0487 Desulfovibrio vulgaris RCH1 AsnC family transcriptional regulator YP_005701294.1 606203 R 573059 CDS YP_005701295.1 387152359 12868885 complement(606659..607075) 1 NC_017310.1 KEGG: drt:Dret_0869 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 607075 12868885 Deval_0488 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005701295.1 606659 R 573059 CDS YP_005701296.1 387152360 12868886 complement(607168..608553) 1 NC_017310.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6; hypothetical protein 608553 12868886 Deval_0489 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701296.1 607168 R 573059 CDS YP_005701297.1 387152361 12868887 complement(608577..609257) 1 NC_017310.1 KEGG: dde:Dde_0649 hmc operon protein 5; hmc operon protein 5 609257 12868887 Deval_0490 Desulfovibrio vulgaris RCH1 hmc operon protein 5 YP_005701297.1 608577 R 573059 CDS YP_005701298.1 387152362 12868888 complement(609279..609422) 1 NC_017310.1 KEGG: dde:Dde_0650 hmc operon protein 4; hmc operon protein 4 609422 12868888 Deval_0491 Desulfovibrio vulgaris RCH1 hmc operon protein 4 YP_005701298.1 609279 R 573059 CDS YP_005701299.1 387152363 12868889 complement(609438..610604) 1 NC_017310.1 PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3; polysulfide reductase NrfD 610604 12868889 Deval_0492 Desulfovibrio vulgaris RCH1 polysulfide reductase NrfD YP_005701299.1 609438 R 573059 CDS YP_005701300.1 387152364 12868890 complement(610605..611717) 1 NC_017310.1 KEGG: dde:Dde_0652 hypothetical protein; hypothetical protein 611717 12868890 Deval_0493 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701300.1 610605 R 573059 CDS YP_005701301.1 387152365 12868891 complement(611736..613373) 1 NC_017310.1 PFAM: Cytochrome c, class III, conserved region; cytochrome c class I; KEGG: dde:Dde_0653 high-molecular-weight cytochrome c; cytochrome c, class III, conserved region 613373 12868891 Deval_0494 Desulfovibrio vulgaris RCH1 cytochrome c, class III, conserved region YP_005701301.1 611736 R 573059 CDS YP_005701302.1 387152366 12868892 613808..614596 1 NC_017310.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: dde:Dde_0655 AP endonuclease; xylose isomerase domain-containing protein 614596 12868892 Deval_0495 Desulfovibrio vulgaris RCH1 xylose isomerase domain-containing protein YP_005701302.1 613808 D 573059 CDS YP_005701303.1 387152367 12868893 complement(614614..616017) 1 NC_017310.1 KEGG: drt:Dret_0970 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 616017 12868893 Deval_0496 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005701303.1 614614 R 573059 CDS YP_005701304.1 387152368 12868894 complement(616001..618412) 1 NC_017310.1 KEGG: dma:DMR_33170 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 618412 12868894 Deval_0497 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701304.1 616001 R 573059 CDS YP_005701305.1 387152369 12868895 618710..619132 1 NC_017310.1 PFAM: UspA domain-containing protein; KEGG: dma:DMR_33160 putative universal stress protein; UspA domain-containing protein 619132 12868895 Deval_0498 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005701305.1 618710 D 573059 CDS YP_005701306.1 387152370 12868896 619154..620263 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0324; KEGG: dma:DMR_33150 hypothetical membrane protein; hypothetical protein 620263 12868896 Deval_0499 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701306.1 619154 D 573059 CDS YP_005701307.1 387152371 12868897 620286..620687 1 NC_017310.1 KEGG: dds:Ddes_0931 hypothetical protein; hypothetical protein 620687 12868897 Deval_0500 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701307.1 620286 D 573059 CDS YP_005701308.1 387152372 12868898 620687..621112 1 NC_017310.1 KEGG: dds:Ddes_0932 hypothetical protein; hypothetical protein 621112 12868898 Deval_0501 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701308.1 620687 D 573059 CDS YP_005701309.1 387152373 12868899 621561..622679 1 NC_017310.1 PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein; extracellular ligand-binding receptor 622679 12868899 Deval_0502 Desulfovibrio vulgaris RCH1 extracellular ligand-binding receptor YP_005701309.1 621561 D 573059 CDS YP_005701310.1 387152374 12868900 622783..623691 1 NC_017310.1 PFAM: inner-membrane translocator; KEGG: dba:Dbac_2501 inner-membrane translocator; inner-membrane translocator 623691 12868900 Deval_0503 Desulfovibrio vulgaris RCH1 inner-membrane translocator YP_005701310.1 622783 D 573059 CDS YP_005701311.1 387152375 12868901 623719..624942 1 NC_017310.1 PFAM: inner-membrane translocator; KEGG: dba:Dbac_2500 inner-membrane translocator; inner-membrane translocator 624942 12868901 Deval_0504 Desulfovibrio vulgaris RCH1 inner-membrane translocator YP_005701311.1 623719 D 573059 CDS YP_005701312.1 387152376 12868902 624942..625730 1 NC_017310.1 KEGG: dsa:Desal_1549 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 625730 12868902 Deval_0505 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701312.1 624942 D 573059 CDS YP_005701313.1 387152377 12868903 625723..626427 1 NC_017310.1 KEGG: dde:Dde_0608 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 626427 12868903 Deval_0506 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701313.1 625723 D 573059 CDS YP_005701314.1 387152378 12868904 626629..627594 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3057 glycosyl transferase family protein; family 2 glycosyl transferase 627594 12868904 Deval_0507 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005701314.1 626629 D 573059 CDS YP_005701315.1 387152379 12868905 627920..628858 1 NC_017310.1 KEGG: cpb:Cphamn1_2145 NAD-dependent epimerase/dehydratase; manually curated; PFAM: NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 628858 12868905 Deval_0508 Desulfovibrio vulgaris RCH1 NAD-dependent epimerase/dehydratase YP_005701315.1 627920 D 573059 CDS YP_005701316.1 387152380 12868906 629180..629443 1 NC_017310.1 PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_3289 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 629443 12868906 Deval_0509 Desulfovibrio vulgaris RCH1 transposase IS3/IS911 family protein YP_005701316.1 629180 D 573059 CDS YP_005701317.1 387152381 12868908 630292..631032 1 NC_017310.1 manually curated; KEGG: cli:Clim_1959 hypothetical protein; hypothetical protein 631032 12868908 Deval_0511 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701317.1 630292 D 573059 CDS YP_005701318.1 387152382 12868909 631118..631699 1 NC_017310.1 manually curated; KEGG: cyn:Cyan7425_3799 methyltransferase type 11; type 11 methyltransferase 631699 12868909 Deval_0512 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005701318.1 631118 D 573059 CDS YP_005701319.1 387152383 12868910 631677..632840 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dap:Dacet_1892 glycosyl transferase group 1; group 1 glycosyl transferase 632840 12868910 Deval_0513 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005701319.1 631677 D 573059 CDS YP_005701320.1 387152384 12868911 632953..633219 1 NC_017310.1 PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_2193 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 633219 12868911 Deval_0514 Desulfovibrio vulgaris RCH1 transposase IS3/IS911 family protein YP_005701320.1 632953 D 573059 CDS YP_005701321.1 387152385 12868912 633216..634064 1 NC_017310.1 KEGG: dba:Dbac_2192 integrase catalytic region; manually curated; PFAM: Integrase catalytic region; integrase catalytic subunit 634064 12868912 Deval_0515 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005701321.1 633216 D 573059 CDS YP_005701322.1 387152386 12868913 complement(634045..634440) 1 NC_017310.1 KEGG: glo:Glov_1005 integrase catalytic region; integrase catalytic subunit 634440 12868913 Deval_0516 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005701322.1 634045 R 573059 CDS YP_005701323.1 387152387 12868914 complement(634652..635668) 1 NC_017310.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: dds:Ddes_0156 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I 635668 12868914 Deval_0517 Desulfovibrio vulgaris RCH1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_005701323.1 634652 R 573059 CDS YP_005701324.1 387152388 12868915 complement(635688..636245) 1 NC_017310.1 KEGG: dds:Ddes_0158 putative phytochrome sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein; putative GAF sensor protein 636245 12868915 Deval_0518 Desulfovibrio vulgaris RCH1 putative GAF sensor protein YP_005701324.1 635688 R 573059 CDS YP_005701325.1 387152389 12868916 complement(636460..637539) 1 NC_017310.1 PFAM: Integral membrane protein TerC; KEGG: sat:SYN_01926 tellurium resistance protein; integral membrane protein TerC 637539 12868916 Deval_0519 Desulfovibrio vulgaris RCH1 integral membrane protein TerC YP_005701325.1 636460 R 573059 CDS YP_005701326.1 387152390 12868917 complement(637661..638701) 1 NC_017310.1 TIGRFAM: tRNA 2-selenouridine synthase; PFAM: Rhodanese domain protein; KEGG: sli:Slin_4991 tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; tRNA 2-selenouridine synthase 638701 12868917 Deval_0520 Desulfovibrio vulgaris RCH1 tRNA 2-selenouridine synthase YP_005701326.1 637661 R 573059 CDS YP_005701327.1 387152391 12868918 638980..640560 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; amino acid-binding ACT domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_1552 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 640560 12868918 Deval_0521 Desulfovibrio vulgaris RCH1 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_005701327.1 638980 D 573059 CDS YP_005701328.1 387152392 12868919 640939..642051 1 NC_017310.1 TIGRFAM: alanine dehydrogenase; KEGG: dde:Dde_1553 L-alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; alanine dehydrogenase 642051 12868919 Deval_0522 Desulfovibrio vulgaris RCH1 alanine dehydrogenase YP_005701328.1 640939 D 573059 CDS YP_005701329.1 387152393 12868920 642458..642796 1 NC_017310.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein; type IV pilus assembly PilZ 642796 12868920 Deval_0523 Desulfovibrio vulgaris RCH1 type IV pilus assembly PilZ YP_005701329.1 642458 D 573059 CDS YP_005701330.1 387152394 12868921 643229..643714 1 NC_017310.1 PFAM: CreA family protein; KEGG: app:CAP2UW1_0671 CreA family protein; CreA family protein 643714 12868921 Deval_0524 Desulfovibrio vulgaris RCH1 CreA family protein YP_005701330.1 643229 D 573059 CDS YP_005701331.1 387152395 12868922 643785..644543 1 NC_017310.1 KEGG: tai:Taci_1481 hypothetical protein; hypothetical protein 644543 12868922 Deval_0525 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701331.1 643785 D 573059 CDS YP_005701332.1 387152396 12868923 complement(644848..645129) 1 NC_017310.1 KEGG: dds:Ddes_1270 hypothetical protein; hypothetical protein 645129 12868923 Deval_0526 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701332.1 644848 R 573059 CDS YP_005701333.1 387152397 12868924 complement(645358..645921) 1 NC_017310.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 645921 12868924 Deval_0527 Desulfovibrio vulgaris RCH1 methionine-R-sulfoxide reductase YP_005701333.1 645358 R 573059 CDS YP_005701334.1 387152398 12868925 646156..647037 1 NC_017310.1 PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE, putative; formate dehydrogenase accessory protein 647037 12868925 Deval_0528 Desulfovibrio vulgaris RCH1 formate dehydrogenase accessory protein YP_005701334.1 646156 D 573059 CDS YP_005701335.1 387152399 12868926 647039..647827 1 NC_017310.1 PFAM: formate dehydrogenase subunit FdhD; KEGG: dde:Dde_0707 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase subunit FdhD 647827 12868926 Deval_0529 Desulfovibrio vulgaris RCH1 formate dehydrogenase subunit FdhD YP_005701335.1 647039 D 573059 CDS YP_005701336.1 387152400 12868927 647824..648492 1 NC_017310.1 KEGG: dde:Dde_0708 molybdopterin-guanine dinucleotide biosynthesis protein A, putative; molybdopterin-guanine dinucleotide biosynthesis protein A 648492 12868927 Deval_0530 Desulfovibrio vulgaris RCH1 molybdopterin-guanine dinucleotide biosynthesis protein A YP_005701336.1 647824 D 573059 CDS YP_005701337.1 387152401 12868928 648489..649514 1 NC_017310.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 649514 12868928 Deval_0531 Desulfovibrio vulgaris RCH1 molybdenum cofactor biosynthesis protein A YP_005701337.1 648489 D 573059 CDS YP_005701338.1 387152402 12868929 complement(649751..650452) 1 NC_017310.1 KEGG: dsa:Desal_1123 anti-sigma-factor antagonist; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 650452 12868929 Deval_0532 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005701338.1 649751 R 573059 CDS YP_005701339.1 387152403 12868930 complement(650488..652506) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase 652506 12868930 Deval_0533 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701339.1 650488 R 573059 CDS YP_005701340.1 387152404 12868931 complement(652503..653774) 1 NC_017310.1 PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0712 putative lipoprotein; extracellular ligand-binding receptor 653774 12868931 Deval_0534 Desulfovibrio vulgaris RCH1 extracellular ligand-binding receptor YP_005701340.1 652503 R 573059 CDS YP_005701341.1 387152405 12868932 653906..654778 1 NC_017310.1 KEGG: dde:Dde_0714 transposase, putative; transposase 654778 12868932 Deval_0535 Desulfovibrio vulgaris RCH1 transposase YP_005701341.1 653906 D 573059 CDS YP_005701342.1 387152406 12868933 complement(654941..657334) 1 NC_017310.1 KEGG: dat:HRM2_13300 hypothetical protein; hypothetical protein 657334 12868933 Deval_0536 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701342.1 654941 R 573059 CDS YP_005701343.1 387152407 12868934 657710..657934 1 NC_017310.1 KEGG: dde:Dde_0814 hypothetical protein; hypothetical protein 657934 12868934 Deval_0537 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701343.1 657710 D 573059 CDS YP_005701344.1 387152408 12868935 657952..658527 1 NC_017310.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: dde:Dde_0716 formate dehydrogenase; molybdopterin oxidoreductase Fe4S4 region 658527 12868935 Deval_0538 Desulfovibrio vulgaris RCH1 molybdopterin oxidoreductase Fe4S4 region YP_005701344.1 657952 D 573059 CDS YP_005701345.1 387152409 12868936 658576..660969 1 NC_017310.1 TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: dde:Dde_0717 formate dehydrogenase, alpha subunit, anaerobic; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 660969 12868936 Deval_0539 Desulfovibrio vulgaris RCH1 formate dehydrogenase subunit alpha YP_005701345.1 658576 D 573059 CDS YP_005701346.1 387152410 12868937 660981..661691 1 NC_017310.1 KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative; formate dehydrogenase subunit beta 661691 12868937 Deval_0540 Desulfovibrio vulgaris RCH1 formate dehydrogenase subunit beta YP_005701346.1 660981 D 573059 CDS YP_005701347.1 387152411 12868938 662119..662895 1 NC_017310.1 PFAM: Fe-S cluster domain protein; KEGG: dde:Dde_0719 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Fe-S cluster domain-containing protein 662895 12868938 Deval_0541 Desulfovibrio vulgaris RCH1 Fe-S cluster domain-containing protein YP_005701347.1 662119 D 573059 CDS YP_005701348.1 387152412 12868939 663379..663687 1 NC_017310.1 KEGG: dde:Dde_0490 hypothetical protein; hypothetical protein 663687 12868939 Deval_0542 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701348.1 663379 D 573059 CDS YP_005701349.1 387152413 12868940 663871..665829 1 NC_017310.1 KEGG: dsa:Desal_0892 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 665829 12868940 Deval_0543 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005701349.1 663871 D 573059 CDS YP_005701350.1 387152414 12868941 665875..666396 1 NC_017310.1 KEGG: dsa:Desal_3034 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein 666396 12868941 Deval_0544 Desulfovibrio vulgaris RCH1 CheW protein YP_005701350.1 665875 D 573059 CDS YP_005701351.1 387152415 12868942 complement(666756..667376) 1 NC_017310.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dsa:Desal_2540 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 667376 12868942 Deval_0545 Desulfovibrio vulgaris RCH1 lysine exporter protein LysE/YggA YP_005701351.1 666756 R 573059 CDS YP_005701352.1 387152416 12868943 667474..668376 1 NC_017310.1 KEGG: dal:Dalk_5021 chromosome replication initiation inhibitor protein; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR family transcriptional regulator 668376 12868943 Deval_0546 Desulfovibrio vulgaris RCH1 LysR family transcriptional regulator YP_005701352.1 667474 D 573059 CDS YP_005701353.1 387152417 12868944 668530..668877 1 NC_017310.1 KEGG: dde:Dde_2602 hypothetical protein; hypothetical protein 668877 12868944 Deval_0547 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701353.1 668530 D 573059 CDS YP_005701354.1 387152418 12868945 669037..669810 1 NC_017310.1 KEGG: dma:DMR_32980 sensory transduction protein LytR; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; LytTR family two component transcriptional regulator 669810 12868945 Deval_0548 Desulfovibrio vulgaris RCH1 LytTR family two component transcriptional regulator YP_005701354.1 669037 D 573059 CDS YP_005701355.1 387152419 12868946 669909..671651 1 NC_017310.1 KEGG: dma:DMR_32990 sensor protein LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; signal transduction histidine kinase LytS 671651 12868946 Deval_0549 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase LytS YP_005701355.1 669909 D 573059 CDS YP_005701356.1 387152420 12868947 671855..673276 1 NC_017310.1 PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A, putative; carbon starvation protein CstA 673276 12868947 Deval_0550 Desulfovibrio vulgaris RCH1 carbon starvation protein CstA YP_005701356.1 671855 D 573059 CDS YP_005701357.1 387152421 12868948 673603..675024 1 NC_017310.1 PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A, putative; carbon starvation protein CstA 675024 12868948 Deval_0551 Desulfovibrio vulgaris RCH1 carbon starvation protein CstA YP_005701357.1 673603 D 573059 CDS YP_005701358.1 387152422 12868949 675322..676251 1 NC_017310.1 KEGG: chl:Chy400_1816 L-lactate dehydrogenase; TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; L-lactate dehydrogenase 676251 12868949 Deval_0552 Desulfovibrio vulgaris RCH1 L-lactate dehydrogenase YP_005701358.1 675322 D 573059 CDS YP_005701359.1 387152423 12868950 676663..677097 1 NC_017310.1 PFAM: thioesterase superfamily protein; KEGG: alv:Alvin_0253 thioesterase superfamily protein; thioesterase superfamily protein 677097 12868950 Deval_0553 Desulfovibrio vulgaris RCH1 thioesterase superfamily protein YP_005701359.1 676663 D 573059 CDS YP_005701360.1 387152424 12868952 complement(677406..677867) 1 NC_017310.1 PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein; hypothetical protein 677867 12868952 Deval_0554 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701360.1 677406 R 573059 CDS YP_005701361.1 387152425 12868953 complement(677997..678263) 1 NC_017310.1 KEGG: bvu:BVU_0460 hypothetical protein; hypothetical protein 678263 12868953 Deval_0555 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701361.1 677997 R 573059 CDS YP_005701362.1 387152426 12868954 678775..679698 1 NC_017310.1 KEGG: dde:Dde_3135 ArsR family transcriptional regulator; PFAM: Methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 679698 12868954 Deval_0556 Desulfovibrio vulgaris RCH1 ArsR family transcriptional regulator YP_005701362.1 678775 D 573059 CDS YP_005701363.1 387152427 12868955 679724..681163 1 NC_017310.1 TIGRFAM: adenosylhomocysteinase; KEGG: dde:Dde_3134 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 681163 12868955 Deval_0557 Desulfovibrio vulgaris RCH1 adenosylhomocysteinase YP_005701363.1 679724 D 573059 CDS YP_005701364.1 387152428 12868956 complement(681316..683349) 1 NC_017310.1 KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 683349 12868956 Deval_0558 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005701364.1 681316 R 573059 CDS YP_005701365.1 387152429 12868957 complement(683505..684140) 1 NC_017310.1 PFAM: protein of unknown function DUF330; KEGG: dsh:Dshi_2047 hypothetical protein; hypothetical protein 684140 12868957 Deval_0559 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701365.1 683505 R 573059 CDS YP_005701366.1 387152430 12868958 complement(684137..685057) 1 NC_017310.1 PFAM: Mammalian cell entry related domain protein; KEGG: pla:Plav_2514 hypothetical protein; Mammalian cell entry related domain-containing protein 685057 12868958 Deval_0560 Desulfovibrio vulgaris RCH1 Mammalian cell entry related domain-containing protein YP_005701366.1 684137 R 573059 CDS YP_005701367.1 387152431 12868959 complement(685082..685909) 1 NC_017310.1 KEGG: rce:RC1_1442 D-methionine transport ATP-binding protein MetN; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 685909 12868959 Deval_0561 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701367.1 685082 R 573059 CDS YP_005701368.1 387152432 12868960 complement(685925..687130) 1 NC_017310.1 PFAM: protein of unknown function DUF140; KEGG: azl:AZL_e01940 ABC transport system permease protein; hypothetical protein 687130 12868960 Deval_0562 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701368.1 685925 R 573059 CDS YP_005701369.1 387152433 12868961 complement(687614..687895) 1 NC_017310.1 KEGG: dds:Ddes_0085 hypothetical protein; hypothetical protein 687895 12868961 Deval_0563 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701369.1 687614 R 573059 CDS YP_005701370.1 387152434 12868962 complement(688075..688470) 1 NC_017310.1 KEGG: eba:ebA5995 membrane-associated Zn-dependent protease; hypothetical protein 688470 12868962 Deval_0564 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701370.1 688075 R 573059 CDS YP_005701371.1 387152435 12868963 complement(688460..688750) 1 NC_017310.1 KEGG: dsa:Desal_1330 hypothetical protein; hypothetical protein 688750 12868963 Deval_0565 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701371.1 688460 R 573059 CDS YP_005701372.1 387152436 12868964 complement(689035..690474) 1 NC_017310.1 KEGG: dsa:Desal_1331 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 690474 12868964 Deval_0566 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005701372.1 689035 R 573059 CDS YP_005701373.1 387152437 12868965 690590..690973 1 NC_017310.1 KEGG: dsa:Desal_1392 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 690973 12868965 Deval_0567 Desulfovibrio vulgaris RCH1 endoribonuclease L-PSP YP_005701373.1 690590 D 573059 CDS YP_005701374.1 387152438 12868966 complement(691260..692657) 1 NC_017310.1 KEGG: dds:Ddes_0084 putative two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; putative two component, sigma54 specific, transcriptional regulator, Fis family 692657 12868966 Deval_0568 Desulfovibrio vulgaris RCH1 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_005701374.1 691260 R 573059 CDS YP_005701375.1 387152439 12868967 complement(692796..695294) 1 NC_017310.1 KEGG: dds:Ddes_0083 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor hybrid histidine kinase 695294 12868967 Deval_0569 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005701375.1 692796 R 573059 CDS YP_005701376.1 387152440 12868968 695637..696116 1 NC_017310.1 KEGG: dds:Ddes_0082 NapC/NirT cytochrome c family protein; TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; cytochrome c nitrate reductase, small subunit 696116 12868968 Deval_0570 Desulfovibrio vulgaris RCH1 cytochrome c nitrate reductase, small subunit YP_005701376.1 695637 D 573059 CDS YP_005701377.1 387152441 12868969 696109..697683 1 NC_017310.1 KEGG: dba:Dbac_2097 nitrite reductase (cytochrome; ammonia-forming); PFAM: cytochrome c552; Nitrite reductase (cytochrome; ammonia-forming) 697683 12868969 Deval_0571 Desulfovibrio vulgaris RCH1 Nitrite reductase (cytochrome; ammonia-forming) YP_005701377.1 696109 D 573059 CDS YP_005701378.1 387152442 12868970 698116..698595 1 NC_017310.1 KEGG: dde:Dde_3130 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase small subunit 698595 12868970 Deval_0572 Desulfovibrio vulgaris RCH1 acetolactate synthase small subunit YP_005701378.1 698116 D 573059 CDS YP_005701379.1 387152443 12868971 698599..699630 1 NC_017310.1 KEGG: dde:Dde_3129 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; Phosphate butyryltransferase 699630 12868971 Deval_0573 Desulfovibrio vulgaris RCH1 Phosphate butyryltransferase YP_005701379.1 698599 D 573059 CDS YP_005701380.1 387152444 12868972 699627..700745 1 NC_017310.1 KEGG: dde:Dde_3128 butyrate kinase; TIGRFAM: butyrate kinase; PFAM: acetate and butyrate kinase; butyrate kinase 700745 12868972 Deval_0574 Desulfovibrio vulgaris RCH1 butyrate kinase YP_005701380.1 699627 D 573059 CDS YP_005701381.1 387152445 12868973 700888..701448 1 NC_017310.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_3127 TetR family transcriptional regulator; TetR family transcriptional regulator 701448 12868973 Deval_0575 Desulfovibrio vulgaris RCH1 TetR family transcriptional regulator YP_005701381.1 700888 D 573059 CDS YP_005701382.1 387152446 12868974 complement(701816..703381) 1 NC_017310.1 KEGG: dde:Dde_3125 hypothetical protein; hypothetical protein 703381 12868974 Deval_0576 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701382.1 701816 R 573059 CDS YP_005701383.1 387152447 12868975 complement(703628..704080) 1 NC_017310.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: mba:Mbar_A1827 hypothetical protein; cupin 704080 12868975 Deval_0577 Desulfovibrio vulgaris RCH1 cupin YP_005701383.1 703628 R 573059 CDS YP_005701384.1 387152448 12868976 complement(704245..706668) 1 NC_017310.1 TIGRFAM: penicillin-binding protein, 1A family; KEGG: dde:Dde_3124 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 706668 12868976 Deval_0578 Desulfovibrio vulgaris RCH1 penicillin-binding protein YP_005701384.1 704245 R 573059 CDS YP_005701385.1 387152449 12868977 complement(706680..707246) 1 NC_017310.1 KEGG: dde:Dde_3123 hypothetical protein; hypothetical protein 707246 12868977 Deval_0579 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701385.1 706680 R 573059 CDS YP_005701386.1 387152450 12868978 complement(707261..708847) 1 NC_017310.1 KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 708847 12868978 Deval_0580 Desulfovibrio vulgaris RCH1 dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_005701386.1 707261 R 573059 CDS YP_005701387.1 387152451 12868979 complement(709044..709283) 1 NC_017310.1 KEGG: zmn:Za10_1095 beta-lactamase; hypothetical protein 709283 12868979 Deval_0581 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701387.1 709044 R 573059 CDS YP_005701388.1 387152452 12868980 709364..710677 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: hch:HCH_06018 response regulator; SMART: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 710677 12868980 Deval_0582 Desulfovibrio vulgaris RCH1 response regulator receiver modulated diguanylate cyclase YP_005701388.1 709364 D 573059 CDS YP_005701389.1 387152453 12868981 710957..712345 1 NC_017310.1 PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_3119 hypothetical protein; FAD dependent oxidoreductase 712345 12868981 Deval_0583 Desulfovibrio vulgaris RCH1 FAD dependent oxidoreductase YP_005701389.1 710957 D 573059 CDS YP_005701390.1 387152454 12868982 complement(712478..713344) 1 NC_017310.1 KEGG: dde:Dde_3117 hypothetical protein; hypothetical protein 713344 12868982 Deval_0584 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701390.1 712478 R 573059 CDS YP_005701391.1 387152455 12868984 complement(714127..714900) 1 NC_017310.1 PFAM: OmpA/MotB domain protein; KEGG: dsa:Desal_3352 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 714900 12868984 Deval_0585 Desulfovibrio vulgaris RCH1 OmpA/MotB domain-containing protein YP_005701391.1 714127 R 573059 CDS YP_005701392.1 387152456 12868985 complement(714904..715656) 1 NC_017310.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1717 chemotaxis protein PomA; MotA/TolQ/ExbB proton channel 715656 12868985 Deval_0586 Desulfovibrio vulgaris RCH1 MotA/TolQ/ExbB proton channel YP_005701392.1 714904 R 573059 CDS YP_005701393.1 387152457 12868986 complement(715657..716805) 1 NC_017310.1 PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein; hypothetical protein 716805 12868986 Deval_0587 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701393.1 715657 R 573059 CDS YP_005701394.1 387152458 12868987 717205..718017 1 NC_017310.1 PFAM: alpha/beta hydrolase fold; KEGG: bch:Bcen2424_5998 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 718017 12868987 Deval_0588 Desulfovibrio vulgaris RCH1 alpha/beta hydrolase fold protein YP_005701394.1 717205 D 573059 CDS YP_005701395.1 387152459 12868988 718102..718941 1 NC_017310.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein, putative; UBA/THIF-type NAD/FAD binding protein 718941 12868988 Deval_0589 Desulfovibrio vulgaris RCH1 UBA/THIF-type NAD/FAD binding protein YP_005701395.1 718102 D 573059 CDS YP_005701396.1 387152460 12868989 719384..721423 1 NC_017310.1 KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 721423 12868989 Deval_0590 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005701396.1 719384 D 573059 CDS YP_005701397.1 387152461 12868990 complement(721633..722403) 1 NC_017310.1 KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-2 C(20)-methyltransferase 722403 12868990 Deval_0591 Desulfovibrio vulgaris RCH1 precorrin-2 C(20)-methyltransferase YP_005701397.1 721633 R 573059 CDS YP_005701398.1 387152462 12868991 complement(722405..723346) 1 NC_017310.1 PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative; periplasmic binding protein 723346 12868991 Deval_0592 Desulfovibrio vulgaris RCH1 periplasmic binding protein YP_005701398.1 722405 R 573059 CDS YP_005701399.1 387152463 12868992 complement(723297..724112) 1 NC_017310.1 KEGG: dde:Dde_3105 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 724112 12868992 Deval_0593 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701399.1 723297 R 573059 CDS YP_005701400.1 387152464 12868993 complement(724109..725164) 1 NC_017310.1 PFAM: transport system permease protein; KEGG: dde:Dde_3104 iron compound ABC transporter, permease protein; transport system permease 725164 12868993 Deval_0594 Desulfovibrio vulgaris RCH1 transport system permease YP_005701400.1 724109 R 573059 CDS YP_005701401.1 387152465 12868994 complement(725166..726059) 1 NC_017310.1 KEGG: dba:Dbac_1710 anaerobic cobalt chelatase; PFAM: anaerobic cobalt chelatase; Sirohydrochlorin cobaltochelatase 726059 12868994 Deval_0595 Desulfovibrio vulgaris RCH1 Sirohydrochlorin cobaltochelatase YP_005701401.1 725166 R 573059 CDS YP_005701402.1 387152466 12868995 complement(726686..727774) 1 NC_017310.1 KEGG: dde:Dde_3102 hypothetical protein; hypothetical protein 727774 12868995 Deval_0596 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701402.1 726686 R 573059 CDS YP_005701403.1 387152467 12868996 727914..728864 1 NC_017310.1 KEGG: lip:LI1117 chemotaxis signal transduction protein; PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein; response regulator receiver modulated CheW protein 728864 12868996 Deval_0597 Desulfovibrio vulgaris RCH1 response regulator receiver modulated CheW protein YP_005701403.1 727914 D 573059 CDS YP_005701404.1 387152468 12868997 complement(729475..731160) 1 NC_017310.1 KEGG: dde:Dde_3097 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: AAA ATPase; response regulator receiver; putative two component, sigma54 specific, transcriptional regulator, Fis family 731160 12868997 Deval_0598 Desulfovibrio vulgaris RCH1 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_005701404.1 729475 R 573059 CDS YP_005701405.1 387152469 12868998 complement(731181..732407) 1 NC_017310.1 PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase; peptidase U32 732407 12868998 Deval_0599 Desulfovibrio vulgaris RCH1 peptidase U32 YP_005701405.1 731181 R 573059 CDS YP_005701406.1 387152470 12868999 complement(732447..733313) 1 NC_017310.1 KEGG: dde:Dde_3094 phosphoesterase PHP-like; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; PHP domain-containing protein 733313 12868999 Deval_0600 Desulfovibrio vulgaris RCH1 PHP domain-containing protein YP_005701406.1 732447 R 573059 CDS YP_005701407.1 387152471 12869000 733452..733661 1 NC_017310.1 PFAM: protein of unknown function DUF343; KEGG: dba:Dbac_3220 protein of unknown function DUF343; hypothetical protein 733661 12869000 Deval_0601 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701407.1 733452 D 573059 CDS YP_005701408.1 387152472 12869001 733728..734141 1 NC_017310.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3092 HSP20 family protein; heat shock protein Hsp20 734141 12869001 Deval_0602 Desulfovibrio vulgaris RCH1 heat shock protein Hsp20 YP_005701408.1 733728 D 573059 CDS YP_005701409.1 387152473 12869002 734152..734613 1 NC_017310.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3091 HSP20 family protein; heat shock protein Hsp20 734613 12869002 Deval_0603 Desulfovibrio vulgaris RCH1 heat shock protein Hsp20 YP_005701409.1 734152 D 573059 CDS YP_005701410.1 387152474 12869003 complement(734872..735642) 1 NC_017310.1 KEGG: dds:Ddes_1303 hypothetical protein; hypothetical protein 735642 12869003 Deval_0604 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701410.1 734872 R 573059 CDS YP_005701411.1 387152475 12869004 735853..736419 1 NC_017310.1 KEGG: dds:Ddes_1746 phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; phosphodiesterase 736419 12869004 Deval_0605 Desulfovibrio vulgaris RCH1 phosphodiesterase YP_005701411.1 735853 D 573059 CDS YP_005701412.1 387152476 12869005 736433..737635 1 NC_017310.1 PFAM: dihydrouridine synthase DuS; KEGG: dde:Dde_3089 dihydrouridine synthase family protein; dihydrouridine synthase DuS 737635 12869005 Deval_0606 Desulfovibrio vulgaris RCH1 dihydrouridine synthase DuS YP_005701412.1 736433 D 573059 CDS YP_005701413.1 387152477 12869006 complement(737663..737824) 1 NC_017310.1 KEGG: ssc:100154622 similar to synapse defective 1, Rho GTPase, homolog 2; synapse defective 1, Rho GTPase-like protein 737824 12869006 Deval_0607 Desulfovibrio vulgaris RCH1 synapse defective 1, Rho GTPase-like protein YP_005701413.1 737663 R 573059 CDS YP_005701414.1 387152478 12869007 complement(737821..738792) 1 NC_017310.1 KEGG: dde:Dde_3081 serine O-acetyltransferase; Serine O-acetyltransferase 738792 12869007 Deval_0608 Desulfovibrio vulgaris RCH1 Serine O-acetyltransferase YP_005701414.1 737821 R 573059 CDS YP_005701415.1 387152479 12869008 complement(738960..739886) 1 NC_017310.1 KEGG: dde:Dde_3080 cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase 739886 12869008 Deval_0609 Desulfovibrio vulgaris RCH1 cysteine synthase YP_005701415.1 738960 R 573059 CDS YP_005701416.1 387152480 12869009 complement(740014..741198) 1 NC_017310.1 TIGRFAM: cysteine desulfurase NifS; KEGG: dde:Dde_3079 cysteine desulfurase; PFAM: aminotransferase class V; cysteine desulfurase NifS 741198 12869009 Deval_0610 Desulfovibrio vulgaris RCH1 cysteine desulfurase NifS YP_005701416.1 740014 R 573059 CDS YP_005701417.1 387152481 12869010 complement(741195..742040) 1 NC_017310.1 KEGG: dde:Dde_3078 Fe-S cluster assembly protein NifU; TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; Fe-S cluster assembly protein NifU 742040 12869010 Deval_0611 Desulfovibrio vulgaris RCH1 Fe-S cluster assembly protein NifU YP_005701417.1 741195 R 573059 CDS YP_005701418.1 387152482 12869011 complement(742137..743123) 1 NC_017310.1 KEGG: dde:Dde_3077 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 743123 12869011 Deval_0612 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005701418.1 742137 R 573059 CDS YP_005701419.1 387152483 12869012 complement(743249..744238) 1 NC_017310.1 KEGG: dma:DMR_44230 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 744238 12869012 Deval_0613 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005701419.1 743249 R 573059 CDS YP_005701420.1 387152484 12869013 744408..745994 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 745994 12869013 Deval_0614 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_005701420.1 744408 D 573059 CDS YP_005701421.1 387152485 12869014 746160..746930 1 NC_017310.1 KEGG: azl:AZL_f01770 hypothetical protein; hypothetical protein 746930 12869014 Deval_0615 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701421.1 746160 D 573059 CDS YP_005701422.1 387152486 12869015 747011..748222 1 NC_017310.1 PFAM: O-antigen polymerase; KEGG: dba:Dbac_3295 O-antigen polymerase; O-antigen polymerase 748222 12869015 Deval_0616 Desulfovibrio vulgaris RCH1 O-antigen polymerase YP_005701422.1 747011 D 573059 CDS YP_005701423.1 387152487 12869016 complement(748382..750019) 1 NC_017310.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1218 hypothetical protein; ferredoxin-dependent glutamate synthase 750019 12869016 Deval_0617 Desulfovibrio vulgaris RCH1 ferredoxin-dependent glutamate synthase YP_005701423.1 748382 R 573059 CDS YP_005701424.1 387152488 12869017 750539..750847 1 NC_017310.1 KEGG: sgr:SGR_3147 hypothetical protein; hypothetical protein 750847 12869017 Deval_0618 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701424.1 750539 D 573059 CDS YP_005701425.1 387152489 12869018 750875..751711 1 NC_017310.1 KEGG: dde:Dde_3071 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 751711 12869018 Deval_0619 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005701425.1 750875 D 573059 CDS YP_005701426.1 387152490 12869019 751741..752562 1 NC_017310.1 KEGG: dde:Dde_3070 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein 752562 12869019 Deval_0620 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005701426.1 751741 D 573059 CDS YP_005701427.1 387152491 12869020 752577..753521 1 NC_017310.1 KEGG: dde:Dde_3069 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 753521 12869020 Deval_0621 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005701427.1 752577 D 573059 CDS YP_005701428.1 387152492 12869021 complement(753803..754852) 1 NC_017310.1 manually curated; KEGG: dds:Ddes_0869 membrane-bound lytic murein transglycosylase B-like protein; membrane-bound lytic murein transglycosylase B-like protein 754852 12869021 Deval_0622 Desulfovibrio vulgaris RCH1 membrane-bound lytic murein transglycosylase B-like protein YP_005701428.1 753803 R 573059 CDS YP_005701429.1 387152493 12869022 complement(755206..756672) 1 NC_017310.1 KEGG: dde:Dde_2952 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 756672 12869022 Deval_0623 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005701429.1 755206 R 573059 CDS YP_005701430.1 387152494 12869023 complement(756660..758591) 1 NC_017310.1 KEGG: dde:Dde_2951 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 758591 12869023 Deval_0624 Desulfovibrio vulgaris RCH1 PAS/PAC sensor signal transduction histidine kinase YP_005701430.1 756660 R 573059 CDS YP_005701431.1 387152495 12869024 complement(758594..760597) 1 NC_017310.1 KEGG: dsa:Desal_1726 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase 760597 12869024 Deval_0625 Desulfovibrio vulgaris RCH1 histidine kinase YP_005701431.1 758594 R 573059 CDS YP_005701432.1 387152496 12869025 complement(760817..761515) 1 NC_017310.1 PFAM: CI repressor; Peptidase S24/S26A/S26B, conserved region; KEGG: dde:Dde_2949 DNA-binding protein, putative; CI repressor 761515 12869025 Deval_0626 Desulfovibrio vulgaris RCH1 CI repressor YP_005701432.1 760817 R 573059 CDS YP_005701433.1 387152497 12869026 complement(761844..762695) 1 NC_017310.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: lip:LI0676 membrane protease subunits, stomatin/prohibitin homologs; SMART: band 7 protein; HflC protein 762695 12869026 Deval_0627 Desulfovibrio vulgaris RCH1 HflC protein YP_005701433.1 761844 R 573059 CDS YP_005701434.1 387152498 12869027 complement(762697..763833) 1 NC_017310.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: lip:LI0675 membrane protease subunits, stomatin/prohibitin homologs; SMART: band 7 protein; HflK protein 763833 12869027 Deval_0628 Desulfovibrio vulgaris RCH1 HflK protein YP_005701434.1 762697 R 573059 CDS YP_005701435.1 387152499 12869028 763885..765246 1 NC_017310.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: dde:Dde_2945 phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 765246 12869028 Deval_0629 Desulfovibrio vulgaris RCH1 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_005701435.1 763885 D 573059 CDS YP_005701436.1 387152500 12869029 765306..765818 1 NC_017310.1 KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 765818 12869029 Deval_0630 Desulfovibrio vulgaris RCH1 iron-sulfur cluster-binding protein YP_005701436.1 765306 D 573059 CDS YP_005701437.1 387152501 12869030 765808..767571 1 NC_017310.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2943 aldehyde:ferredoxin oxidoreductase, tungsten-containing, putative; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 767571 12869030 Deval_0631 Desulfovibrio vulgaris RCH1 Aldehyde ferredoxin oxidoreductase YP_005701437.1 765808 D 573059 CDS YP_005701438.1 387152502 12869031 767572..768072 1 NC_017310.1 KEGG: dde:Dde_2942 hypothetical protein; hypothetical protein 768072 12869031 Deval_0632 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701438.1 767572 D 573059 CDS YP_005701439.1 387152503 12869032 768082..768552 1 NC_017310.1 PFAM: ribonuclease H; KEGG: dde:Dde_2941 ribonuclease H; ribonuclease H 768552 12869032 Deval_0633 Desulfovibrio vulgaris RCH1 ribonuclease H YP_005701439.1 768082 D 573059 CDS YP_005701440.1 387152504 12869033 768914..769585 1 NC_017310.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein; type IV pilus assembly PilZ 769585 12869033 Deval_0634 Desulfovibrio vulgaris RCH1 type IV pilus assembly PilZ YP_005701440.1 768914 D 573059 CDS YP_005701441.1 387152505 12869034 769600..770559 1 NC_017310.1 KEGG: dds:Ddes_0036 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 770559 12869034 Deval_0635 Desulfovibrio vulgaris RCH1 nucleoside recognition domain-containing protein YP_005701441.1 769600 D 573059 CDS YP_005701442.1 387152506 12869035 complement(771092..772351) 1 NC_017310.1 KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative; molybdopterin oxidoreductase, transmembrane subunit, putative 772351 12869035 Deval_0636 Desulfovibrio vulgaris RCH1 molybdopterin oxidoreductase, transmembrane subunit, putative YP_005701442.1 771092 R 573059 CDS YP_005701443.1 387152507 12869036 complement(772355..773122) 1 NC_017310.1 KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative; molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative 773122 12869036 Deval_0637 Desulfovibrio vulgaris RCH1 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative YP_005701443.1 772355 R 573059 CDS YP_005701444.1 387152508 12869037 complement(773135..775210) 1 NC_017310.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; molybdopterin oxidoreductase 775210 12869037 Deval_0638 Desulfovibrio vulgaris RCH1 molybdopterin oxidoreductase YP_005701444.1 773135 R 573059 CDS YP_005701445.1 387152509 12869038 complement(775226..775858) 1 NC_017310.1 KEGG: dde:Dde_2932 hypothetical protein; hypothetical protein 775858 12869038 Deval_0639 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701445.1 775226 R 573059 CDS YP_005701446.1 387152510 12869039 complement(776373..777791) 1 NC_017310.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 777791 12869039 Deval_0640 Desulfovibrio vulgaris RCH1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_005701446.1 776373 R 573059 CDS YP_005701447.1 387152511 12869040 complement(777788..778360) 1 NC_017310.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: dde:Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 778360 12869040 Deval_0641 Desulfovibrio vulgaris RCH1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_005701447.1 777788 R 573059 CDS YP_005701448.1 387152512 12869043 complement(780628..783084) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: dsa:Desal_1903 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 783084 12869043 Deval_0644 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_005701448.1 780628 R 573059 CDS YP_005701449.1 387152513 12869044 783326..785515 1 NC_017310.1 TIGRFAM: malate synthase G; KEGG: dma:DMR_26930 malate synthase; PFAM: Malate synthase family protein; malate synthase G 785515 12869044 Deval_0645 Desulfovibrio vulgaris RCH1 malate synthase G YP_005701449.1 783326 D 573059 CDS YP_005701450.1 387152514 12869046 786131..786577 1 NC_017310.1 KEGG: dde:Dde_2858 cytochrome c family protein; cytochrome c family protein 786577 12869046 Deval_0647 Desulfovibrio vulgaris RCH1 cytochrome c family protein YP_005701450.1 786131 D 573059 CDS YP_005701451.1 387152515 12869047 786737..788560 1 NC_017310.1 TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein LepA domain protein; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; KEGG: dds:Ddes_2193 GTP-binding protein LepA; SMART: elongation factor G domain-containing protein; GTP-binding protein LepA 788560 12869047 Deval_0648 Desulfovibrio vulgaris RCH1 GTP-binding protein LepA YP_005701451.1 786737 D 573059 CDS YP_005701452.1 387152516 12869048 788607..789206 1 NC_017310.1 TIGRFAM: signal peptidase I; KEGG: dds:Ddes_0282 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; signal peptidase I 789206 12869048 Deval_0649 Desulfovibrio vulgaris RCH1 signal peptidase I YP_005701452.1 788607 D 573059 CDS YP_005701453.1 387152517 12869049 complement(789656..790939) 1 NC_017310.1 KEGG: app:CAP2UW1_3687 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 790939 12869049 Deval_0650 Desulfovibrio vulgaris RCH1 TRAP dicarboxylate transporter subunit DctM YP_005701453.1 789656 R 573059 CDS YP_005701454.1 387152518 12869050 complement(790936..791406) 1 NC_017310.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dar:Daro_3390 tripartite ATP-independent periplasmic transporter DctQ; tripartite AtP-independent periplasmic transporter subunit DctQ 791406 12869050 Deval_0651 Desulfovibrio vulgaris RCH1 tripartite AtP-independent periplasmic transporter subunit DctQ YP_005701454.1 790936 R 573059 CDS YP_005701455.1 387152519 12869051 complement(791491..792507) 1 NC_017310.1 KEGG: tmz:Tmz1t_0498 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP 792507 12869051 Deval_0652 Desulfovibrio vulgaris RCH1 TRAP dicarboxylate transporter subunit DctP YP_005701455.1 791491 R 573059 CDS YP_005701456.1 387152520 12869052 793490..795154 1 NC_017310.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: lip:LI0751 Mg chelatase-related protein; SMART: AAA ATPase; Mg chelatase subunit ChlI 795154 12869052 Deval_0653 Desulfovibrio vulgaris RCH1 Mg chelatase subunit ChlI YP_005701456.1 793490 D 573059 CDS YP_005701457.1 387152521 12869053 795238..795879 1 NC_017310.1 KEGG: dde:Dde_2770 hypothetical protein; hypothetical protein 795879 12869053 Deval_0654 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701457.1 795238 D 573059 CDS YP_005701458.1 387152522 12869054 796246..797376 1 NC_017310.1 PFAM: Extracellular ligand-binding receptor; KEGG: dds:Ddes_0472 extracellular ligand-binding receptor; extracellular ligand-binding receptor 797376 12869054 Deval_0655 Desulfovibrio vulgaris RCH1 extracellular ligand-binding receptor YP_005701458.1 796246 D 573059 CDS YP_005701459.1 387152523 12869055 797454..798359 1 NC_017310.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 798359 12869055 Deval_0656 Desulfovibrio vulgaris RCH1 inner-membrane translocator YP_005701459.1 797454 D 573059 CDS YP_005701460.1 387152524 12869056 798356..799309 1 NC_017310.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 799309 12869056 Deval_0657 Desulfovibrio vulgaris RCH1 inner-membrane translocator YP_005701460.1 798356 D 573059 CDS YP_005701461.1 387152525 12869057 799306..800073 1 NC_017310.1 KEGG: dde:Dde_0261 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 800073 12869057 Deval_0658 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701461.1 799306 D 573059 CDS YP_005701462.1 387152526 12869058 800087..800803 1 NC_017310.1 KEGG: dde:Dde_0262 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 800803 12869058 Deval_0659 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701462.1 800087 D 573059 CDS YP_005701463.1 387152527 12869059 802626..803024 1 NC_017310.1 KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 803024 12869059 Deval_0661 Desulfovibrio vulgaris RCH1 transposase IS3/IS911 family protein YP_005701463.1 802626 D 573059 CDS YP_005701464.1 387152528 12869060 803021..803863 1 NC_017310.1 PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit; integrase catalytic subunit 803863 12869060 Deval_0662 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005701464.1 803021 D 573059 CDS YP_005701465.1 387152529 12869061 805210..808020 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3113 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 808020 12869061 Deval_0663 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701465.1 805210 D 573059 CDS YP_005701466.1 387152530 12869062 808007..809563 1 NC_017310.1 KEGG: dba:Dbac_0491 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver; response regulator receiver modulated metal dependent phosphohydrolase 809563 12869062 Deval_0664 Desulfovibrio vulgaris RCH1 response regulator receiver modulated metal dependent phosphohydrolase YP_005701466.1 808007 D 573059 CDS YP_005701467.1 387152531 12869063 809680..810861 1 NC_017310.1 TIGRFAM: phosphoribosylglycinamide formyltransferase 2; KEGG: azo:azo1269 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide formyltransferase 2 810861 12869063 Deval_0665 Desulfovibrio vulgaris RCH1 phosphoribosylglycinamide formyltransferase 2 YP_005701467.1 809680 D 573059 CDS YP_005701468.1 387152532 12869064 complement(811088..812629) 1 NC_017310.1 KEGG: dde:Dde_2852 amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; amino acid carrier protein 812629 12869064 Deval_0666 Desulfovibrio vulgaris RCH1 amino acid carrier protein YP_005701468.1 811088 R 573059 CDS YP_005701469.1 387152533 12869065 complement(812888..815035) 1 NC_017310.1 KEGG: srm:SRM_01746 hypothetical protein; hypothetical protein 815035 12869065 Deval_0667 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701469.1 812888 R 573059 CDS YP_005701470.1 387152534 12869066 complement(815503..816630) 1 NC_017310.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: dde:Dde_2844 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 816630 12869066 Deval_0668 Desulfovibrio vulgaris RCH1 queuine tRNA-ribosyltransferase YP_005701470.1 815503 R 573059 CDS YP_005701471.1 387152535 12869067 complement(816675..817349) 1 NC_017310.1 PFAM: Conserved hypothetical protein CHP02117; KEGG: fba:FIC_01478 hypothetical protein; hypothetical protein 817349 12869067 Deval_0669 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701471.1 816675 R 573059 CDS YP_005701472.1 387152536 12869068 817770..818225 1 NC_017310.1 KEGG: dde:Dde_2843 hypothetical protein; hypothetical protein 818225 12869068 Deval_0670 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701472.1 817770 D 573059 CDS YP_005701473.1 387152537 12869069 complement(818615..819580) 1 NC_017310.1 PFAM: Domain of unknown function DUF1848; KEGG: dde:Dde_2841 hypothetical protein; hypothetical protein 819580 12869069 Deval_0671 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701473.1 818615 R 573059 CDS YP_005701474.1 387152538 12869070 complement(819585..820946) 1 NC_017310.1 KEGG: dde:Dde_2840 hypothetical protein; hypothetical protein 820946 12869070 Deval_0672 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701474.1 819585 R 573059 CDS YP_005701475.1 387152539 12869071 821038..823692 1 NC_017310.1 KEGG: dds:Ddes_2073 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase 823692 12869071 Deval_0673 Desulfovibrio vulgaris RCH1 valyl-tRNA synthetase YP_005701475.1 821038 D 573059 CDS YP_005701476.1 387152540 12869072 823809..824297 1 NC_017310.1 KEGG: dsa:Desal_1295 hypothetical protein; hypothetical protein 824297 12869072 Deval_0674 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701476.1 823809 D 573059 CDS YP_005701477.1 387152541 12869073 824532..826043 1 NC_017310.1 KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; uroporphyrin-III C-methyltransferase 826043 12869073 Deval_0675 Desulfovibrio vulgaris RCH1 uroporphyrin-III C-methyltransferase YP_005701477.1 824532 D 573059 CDS YP_005701478.1 387152542 12869074 826751..827185 1 NC_017310.1 PFAM: MOSC domain containing protein; KEGG: dde:Dde_2836 MOSC domain-containing protein; MOSC domain-containing protein 827185 12869074 Deval_0676 Desulfovibrio vulgaris RCH1 MOSC domain-containing protein YP_005701478.1 826751 D 573059 CDS YP_005701479.1 387152543 12869075 827212..827889 1 NC_017310.1 KEGG: dds:Ddes_2208 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase 827889 12869075 Deval_0677 Desulfovibrio vulgaris RCH1 phosphoribosylglycinamide formyltransferase YP_005701479.1 827212 D 573059 CDS YP_005701480.1 387152544 12869076 complement(828142..830385) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2832 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 830385 12869076 Deval_0678 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_005701480.1 828142 R 573059 CDS YP_005701481.1 387152545 12869077 complement(830382..831503) 1 NC_017310.1 PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_01770 putative ABC transporter substrate binding protein; extracellular ligand-binding receptor 831503 12869077 Deval_0679 Desulfovibrio vulgaris RCH1 extracellular ligand-binding receptor YP_005701481.1 830382 R 573059 CDS YP_005701482.1 387152546 12869078 831630..832202 1 NC_017310.1 PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein; AMMECR1 domain-containing protein 832202 12869078 Deval_0680 Desulfovibrio vulgaris RCH1 AMMECR1 domain-containing protein YP_005701482.1 831630 D 573059 CDS YP_005701483.1 387152547 12869079 832479..833654 1 NC_017310.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_2829 hypothetical protein; major facilitator superfamily protein 833654 12869079 Deval_0681 Desulfovibrio vulgaris RCH1 major facilitator superfamily protein YP_005701483.1 832479 D 573059 CDS YP_005701484.1 387152548 12869080 833711..834187 1 NC_017310.1 KEGG: lip:LI0565 hypothetical protein; hypothetical protein 834187 12869080 Deval_0682 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701484.1 833711 D 573059 CDS YP_005701485.1 387152549 12869081 834195..835031 1 NC_017310.1 PFAM: UspA domain-containing protein; KEGG: dde:Dde_2827 hypothetical protein; UspA domain-containing protein 835031 12869081 Deval_0683 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005701485.1 834195 D 573059 CDS YP_005701486.1 387152550 12869082 835036..837033 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2826 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 837033 12869082 Deval_0684 Desulfovibrio vulgaris RCH1 PAS/PAC sensor signal transduction histidine kinase YP_005701486.1 835036 D 573059 CDS YP_005701487.1 387152551 12869083 837033..838742 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_2825 Fis family transcriptional regulator; SMART: response regulator receiver; PAS domain containing protein; AAA ATPase; PAS modulated Fis family sigma-54-specific transcriptional regulator 838742 12869083 Deval_0685 Desulfovibrio vulgaris RCH1 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_005701487.1 837033 D 573059 CDS YP_005701488.1 387152552 12869084 838975..839793 1 NC_017310.1 PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0234 ABC transporter, periplasmic substrate-binding protein; extracellular solute-binding protein 839793 12869084 Deval_0686 Desulfovibrio vulgaris RCH1 extracellular solute-binding protein YP_005701488.1 838975 D 573059 CDS YP_005701489.1 387152553 12869085 840255..840950 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0233 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 840950 12869085 Deval_0687 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005701489.1 840255 D 573059 CDS YP_005701490.1 387152554 12869086 840947..841585 1 NC_017310.1 KEGG: dma:DMR_12530 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 841585 12869086 Deval_0688 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701490.1 840947 D 573059 CDS YP_005701491.1 387152555 12869087 complement(841671..843617) 1 NC_017310.1 KEGG: dde:Dde_2823 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase 843617 12869087 Deval_0689 Desulfovibrio vulgaris RCH1 acetate/CoA ligase YP_005701491.1 841671 R 573059 CDS YP_005701492.1 387152556 12869088 complement(843667..844596) 1 NC_017310.1 KEGG: dde:Dde_2822 response regulator receiver domain-containing protein; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; LytTR family two component transcriptional regulator 844596 12869088 Deval_0690 Desulfovibrio vulgaris RCH1 LytTR family two component transcriptional regulator YP_005701492.1 843667 R 573059 CDS YP_005701493.1 387152557 12869089 complement(844887..846896) 1 NC_017310.1 KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 846896 12869089 Deval_0691 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005701493.1 844887 R 573059 CDS YP_005701494.1 387152558 12869090 complement(847292..849082) 1 NC_017310.1 KEGG: dde:Dde_2765 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 849082 12869090 Deval_0692 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005701494.1 847292 R 573059 CDS YP_005701495.1 387152559 12869091 complement(849171..849998) 1 NC_017310.1 KEGG: dde:Dde_2764 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 849998 12869091 Deval_0693 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005701495.1 849171 R 573059 CDS YP_005701496.1 387152560 12869092 complement(850096..850827) 1 NC_017310.1 KEGG: dde:Dde_2763 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 850827 12869092 Deval_0694 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701496.1 850096 R 573059 CDS YP_005701497.1 387152561 12869093 complement(851070..852437) 1 NC_017310.1 KEGG: dde:Dde_2762 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase 852437 12869093 Deval_0695 Desulfovibrio vulgaris RCH1 histidine kinase YP_005701497.1 851070 R 573059 CDS YP_005701498.1 387152562 12869094 852649..853362 1 NC_017310.1 KEGG: dde:Dde_2717 TPR repeat-containing protein; hypothetical protein 853362 12869094 Deval_0696 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701498.1 852649 D 573059 CDS YP_005701499.1 387152563 12869095 853362..853682 1 NC_017310.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2760 hypothetical protein; type IV pilus assembly PilZ 853682 12869095 Deval_0697 Desulfovibrio vulgaris RCH1 type IV pilus assembly PilZ YP_005701499.1 853362 D 573059 CDS YP_005701500.1 387152564 12869096 complement(853887..854204) 1 NC_017310.1 KEGG: dde:Dde_2759 hypothetical protein; hypothetical protein 854204 12869096 Deval_0698 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701500.1 853887 R 573059 CDS YP_005701501.1 387152565 12869097 complement(854314..855519) 1 NC_017310.1 PFAM: peptidase M29 aminopeptidase II; KEGG: dde:Dde_2758 M29 family peptidase; peptidase M29 aminopeptidase II 855519 12869097 Deval_0699 Desulfovibrio vulgaris RCH1 peptidase M29 aminopeptidase II YP_005701501.1 854314 R 573059 CDS YP_005701502.1 387152566 12869098 complement(855782..857059) 1 NC_017310.1 KEGG: dde:Dde_2755 TPR repeat-containing protein; hypothetical protein 857059 12869098 Deval_0700 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701502.1 855782 R 573059 CDS YP_005701503.1 387152567 12869099 complement(857063..857653) 1 NC_017310.1 KEGG: dds:Ddes_2306 putative lipoprotein; putative lipoprotein 857653 12869099 Deval_0701 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005701503.1 857063 R 573059 CDS YP_005701504.1 387152568 12869100 complement(857679..858149) 1 NC_017310.1 PFAM: transcription activator effector binding; KEGG: dde:Dde_2753 hypothetical protein; transcription activator effector binding protein 858149 12869100 Deval_0702 Desulfovibrio vulgaris RCH1 transcription activator effector binding protein YP_005701504.1 857679 R 573059 CDS YP_005701505.1 387152569 12869101 858247..859182 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dsa:Desal_0110 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 859182 12869101 Deval_0703 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005701505.1 858247 D 573059 CDS YP_005701506.1 387152570 12869102 859179..859577 1 NC_017310.1 KEGG: dde:Dde_2752 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 859577 12869102 Deval_0704 Desulfovibrio vulgaris RCH1 histone family protein DNA-binding protein YP_005701506.1 859179 D 573059 CDS YP_005701507.1 387152571 12869103 complement(859870..860136) 1 NC_017310.1 KEGG: saz:Sama_0423 putative mitomycin resistance protein; putative mitomycin resistance protein 860136 12869103 Deval_0705 Desulfovibrio vulgaris RCH1 putative mitomycin resistance protein YP_005701507.1 859870 R 573059 CDS YP_005701508.1 387152572 12869104 complement(860129..861493) 1 NC_017310.1 KEGG: dde:Dde_2751 glycerate 2-kinase; PFAM: MOFRL domain protein; hydroxypyruvate reductase 861493 12869104 Deval_0706 Desulfovibrio vulgaris RCH1 hydroxypyruvate reductase YP_005701508.1 860129 R 573059 CDS YP_005701509.1 387152573 12869105 861692..862222 1 NC_017310.1 PFAM: transport-associated; KEGG: dds:Ddes_1844 transport-associated; transport-associated protein 862222 12869105 Deval_0707 Desulfovibrio vulgaris RCH1 transport-associated protein YP_005701509.1 861692 D 573059 CDS YP_005701510.1 387152574 12869106 complement(862343..863449) 1 NC_017310.1 PFAM: aminotransferase class V; KEGG: dde:Dde_2744 aminotransferase, class V; class V aminotransferase 863449 12869106 Deval_0708 Desulfovibrio vulgaris RCH1 class V aminotransferase YP_005701510.1 862343 R 573059 CDS YP_005701511.1 387152575 12869107 complement(863538..864386) 1 NC_017310.1 TIGRFAM: glutamate racemase; KEGG: dde:Dde_2743 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 864386 12869107 Deval_0709 Desulfovibrio vulgaris RCH1 glutamate racemase YP_005701511.1 863538 R 573059 CDS YP_005701512.1 387152576 12869108 complement(864388..865299) 1 NC_017310.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2742 pyridoxamine kinase; Phosphomethylpyrimidine kinase type-1 865299 12869108 Deval_0710 Desulfovibrio vulgaris RCH1 Phosphomethylpyrimidine kinase type-1 YP_005701512.1 864388 R 573059 CDS YP_005701513.1 387152577 12869109 complement(865548..866498) 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: protein of unknown function DUF81; hypothetical protein 866498 12869109 Deval_0711 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701513.1 865548 R 573059 CDS YP_005701514.1 387152578 12869110 866653..867723 1 NC_017310.1 PFAM: TOBE domain-containing protein; integrase family protein; KEGG: dma:DMR_06550 putative molybdenum-pterin binding protein; TOBE domain-containing protein 867723 12869110 Deval_0712 Desulfovibrio vulgaris RCH1 TOBE domain-containing protein YP_005701514.1 866653 D 573059 CDS YP_005701515.1 387152579 12869111 complement(867965..868312) 1 NC_017310.1 KEGG: dde:Dde_1143 hypothetical protein; hypothetical protein 868312 12869111 Deval_0713 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701515.1 867965 R 573059 CDS YP_005701516.1 387152580 12869112 868588..868827 1 NC_017310.1 KEGG: dde:Dde_1145 hypothetical protein; hypothetical protein 868827 12869112 Deval_0714 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701516.1 868588 D 573059 CDS YP_005701517.1 387152581 12869113 complement(868954..869358) 1 NC_017310.1 KEGG: dde:Dde_0984 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; ATP synthase F1 subunit epsilon 869358 12869113 Deval_0715 Desulfovibrio vulgaris RCH1 ATP synthase F1 subunit epsilon YP_005701517.1 868954 R 573059 CDS YP_005701518.1 387152582 12869114 complement(869370..870782) 1 NC_017310.1 TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: dde:Dde_0985 F0F1 ATP synthase subunit beta; SMART: AAA ATPase; ATP synthase F1 subunit beta 870782 12869114 Deval_0716 Desulfovibrio vulgaris RCH1 ATP synthase F1 subunit beta YP_005701518.1 869370 R 573059 CDS YP_005701519.1 387152583 12869115 complement(870801..871676) 1 NC_017310.1 KEGG: dde:Dde_0986 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 871676 12869115 Deval_0717 Desulfovibrio vulgaris RCH1 ATP synthase F1 subunit gamma YP_005701519.1 870801 R 573059 CDS YP_005701520.1 387152584 12869116 complement(871693..873201) 1 NC_017310.1 KEGG: dde:Dde_0987 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha 873201 12869116 Deval_0718 Desulfovibrio vulgaris RCH1 ATP synthase F1 subunit alpha YP_005701520.1 871693 R 573059 CDS YP_005701521.1 387152585 12869117 complement(873206..873757) 1 NC_017310.1 KEGG: dde:Dde_0988 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; ATP synthase F1 subunit delta 873757 12869117 Deval_0719 Desulfovibrio vulgaris RCH1 ATP synthase F1 subunit delta YP_005701521.1 873206 R 573059 CDS YP_005701522.1 387152586 12869118 complement(873754..874320) 1 NC_017310.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0989 ATP synthase F0, B subunit; H+transporting two-sector ATPase subunit B/B' 874320 12869118 Deval_0720 Desulfovibrio vulgaris RCH1 H+transporting two-sector ATPase subunit B/B' YP_005701522.1 873754 R 573059 CDS YP_005701523.1 387152587 12869119 complement(874357..874773) 1 NC_017310.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0990 ATP synthase F0, B' subunit, putative; H+transporting two-sector ATPase subunit B/B' 874773 12869119 Deval_0721 Desulfovibrio vulgaris RCH1 H+transporting two-sector ATPase subunit B/B' YP_005701523.1 874357 R 573059 CDS YP_005701524.1 387152588 12869120 complement(875550..875897) 1 NC_017310.1 PFAM: protein of unknown function DUF583; KEGG: dsa:Desal_3460 protein of unknown function DUF583; hypothetical protein 875897 12869120 Deval_0722 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701524.1 875550 R 573059 CDS YP_005701525.1 387152589 12869121 complement(875935..877050) 1 NC_017310.1 KEGG: dde:Dde_0992 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein RodA 877050 12869121 Deval_0723 Desulfovibrio vulgaris RCH1 rod shape-determining protein RodA YP_005701525.1 875935 R 573059 CDS YP_005701526.1 387152590 12869122 complement(877047..878834) 1 NC_017310.1 TIGRFAM: penicillin-binding protein 2; KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 878834 12869122 Deval_0724 Desulfovibrio vulgaris RCH1 penicillin-binding protein 2 YP_005701526.1 877047 R 573059 CDS YP_005701527.1 387152591 12869123 complement(878818..879288) 1 NC_017310.1 KEGG: dds:Ddes_0162 hypothetical protein; hypothetical protein 879288 12869123 Deval_0725 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701527.1 878818 R 573059 CDS YP_005701528.1 387152592 12869124 complement(879295..880209) 1 NC_017310.1 KEGG: lip:LI0393 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; rod shape-determining protein MreC 880209 12869124 Deval_0726 Desulfovibrio vulgaris RCH1 rod shape-determining protein MreC YP_005701528.1 879295 R 573059 CDS YP_005701529.1 387152593 12869125 complement(880211..881251) 1 NC_017310.1 KEGG: dds:Ddes_0164 cell shape determining protein, MreB/Mrl family; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein 881251 12869125 Deval_0727 Desulfovibrio vulgaris RCH1 MreB/Mrl family cell shape determining protein YP_005701529.1 880211 R 573059 CDS YP_005701530.1 387152594 12869126 881326..882381 1 NC_017310.1 TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: dde:Dde_0997 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 882381 12869126 Deval_0728 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701530.1 881326 D 573059 CDS YP_005701531.1 387152595 12869127 882456..882941 1 NC_017310.1 KEGG: dma:DMR_04660 putative methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 882941 12869127 Deval_0729 Desulfovibrio vulgaris RCH1 methylated-DNA--protein-cysteine methyltransferase YP_005701531.1 882456 D 573059 CDS YP_005701532.1 387152596 12869128 882935..883267 1 NC_017310.1 KEGG: dde:Dde_1000 hypothetical protein; hypothetical protein 883267 12869128 Deval_0730 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701532.1 882935 D 573059 CDS YP_005701533.1 387152597 12869131 complement(883880..884644) 1 NC_017310.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1006 enoyl-[acyl-carrier-protein] reductase [NADH]; short-chain dehydrogenase/reductase SDR 884644 12869131 Deval_0731 Desulfovibrio vulgaris RCH1 short-chain dehydrogenase/reductase SDR YP_005701533.1 883880 R 573059 CDS YP_005701534.1 387152598 12869132 complement(884758..885654) 1 NC_017310.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dde:Dde_1007 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 885654 12869132 Deval_0732 Desulfovibrio vulgaris RCH1 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_005701534.1 884758 R 573059 CDS YP_005701535.1 387152599 12869133 complement(885671..886981) 1 NC_017310.1 TIGRFAM: histidinol dehydrogenase; KEGG: dde:Dde_1008 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase 886981 12869133 Deval_0733 Desulfovibrio vulgaris RCH1 histidinol dehydrogenase YP_005701535.1 885671 R 573059 CDS YP_005701536.1 387152600 12869134 complement(887110..888540) 1 NC_017310.1 KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 888540 12869134 Deval_0734 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701536.1 887110 R 573059 CDS YP_005701537.1 387152601 12869135 complement(888943..890343) 1 NC_017310.1 KEGG: dde:Dde_1010 hypothetical protein; hypothetical protein 890343 12869135 Deval_0735 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701537.1 888943 R 573059 CDS YP_005701538.1 387152602 12869136 890808..892874 1 NC_017310.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; helix-hairpin-helix motif; KEGG: dde:Dde_1014 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C 892874 12869136 Deval_0736 Desulfovibrio vulgaris RCH1 excinuclease ABC subunit C YP_005701538.1 890808 D 573059 CDS YP_005701539.1 387152603 12869137 893096..894361 1 NC_017310.1 KEGG: pfl:PFL_3537 sensory box histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase 894361 12869137 Deval_0737 Desulfovibrio vulgaris RCH1 histidine kinase YP_005701539.1 893096 D 573059 CDS YP_005701540.1 387152604 12869138 894346..895818 1 NC_017310.1 KEGG: dde:Dde_1016 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 895818 12869138 Deval_0738 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005701540.1 894346 D 573059 CDS YP_005701541.1 387152605 12869139 895986..896282 1 NC_017310.1 KEGG: dde:Dde_1017 hypothetical protein; hypothetical protein 896282 12869139 Deval_0739 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701541.1 895986 D 573059 CDS YP_005701542.1 387152606 12869140 896285..896689 1 NC_017310.1 KEGG: dde:Dde_1018 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 896689 12869140 Deval_0740 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005701542.1 896285 D 573059 CDS YP_005701543.1 387152607 12869141 complement(896959..897999) 1 NC_017310.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dde:Dde_1019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 897999 12869141 Deval_0741 Desulfovibrio vulgaris RCH1 tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase YP_005701543.1 896959 R 573059 CDS YP_005701544.1 387152608 12869142 complement(898014..899483) 1 NC_017310.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; KEGG: dde:Dde_1020 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 899483 12869142 Deval_0742 Desulfovibrio vulgaris RCH1 glutamyl-tRNA(Gln) amidotransferase subunit A YP_005701544.1 898014 R 573059 CDS YP_005701545.1 387152609 12869143 complement(899505..899789) 1 NC_017310.1 KEGG: dde:Dde_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 899789 12869143 Deval_0743 Desulfovibrio vulgaris RCH1 glutamyl-tRNA(Gln) amidotransferase subunit C YP_005701545.1 899505 R 573059 CDS YP_005701546.1 387152610 12869144 complement(899809..901764) 1 NC_017310.1 KEGG: dde:Dde_1022 hypothetical protein; hypothetical protein 901764 12869144 Deval_0744 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701546.1 899809 R 573059 CDS YP_005701547.1 387152611 12869145 complement(901929..903839) 1 NC_017310.1 KEGG: dde:Dde_1023 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 903839 12869145 Deval_0745 Desulfovibrio vulgaris RCH1 chaperone protein DnaK YP_005701547.1 901929 R 573059 CDS YP_005701548.1 387152612 12869146 complement(904058..904633) 1 NC_017310.1 PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE; GrpE protein HSP-70 cofactor 904633 12869146 Deval_0746 Desulfovibrio vulgaris RCH1 GrpE protein HSP-70 cofactor YP_005701548.1 904058 R 573059 CDS YP_005701549.1 387152613 12869147 complement(904899..905966) 1 NC_017310.1 KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like; heat-inducible transcription repressor HrcA 905966 12869147 Deval_0747 Desulfovibrio vulgaris RCH1 heat-inducible transcription repressor HrcA YP_005701549.1 904899 R 573059 CDS YP_005701550.1 387152614 12869148 complement(906099..906584) 1 NC_017310.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_1027 bacterioferritin comigratory protein, putative; alkyl hydroperoxide reductase 906584 12869148 Deval_0748 Desulfovibrio vulgaris RCH1 alkyl hydroperoxide reductase YP_005701550.1 906099 R 573059 CDS YP_005701551.1 387152615 12869149 complement(906769..908874) 1 NC_017310.1 PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein; AsmA family protein 908874 12869149 Deval_0749 Desulfovibrio vulgaris RCH1 AsmA family protein YP_005701551.1 906769 R 573059 CDS YP_005701552.1 387152616 12869150 909028..910659 1 NC_017310.1 KEGG: dde:Dde_1030 cobyric acid synthase; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyric acid synthase CobQ 910659 12869150 Deval_0750 Desulfovibrio vulgaris RCH1 cobyric acid synthase CobQ YP_005701552.1 909028 D 573059 CDS YP_005701553.1 387152617 12869151 complement(910722..911189) 1 NC_017310.1 KEGG: hsl:OE4693R hypothetical protein; hypothetical protein 911189 12869151 Deval_0751 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701553.1 910722 R 573059 CDS YP_005701554.1 387152618 12869152 911392..913140 1 NC_017310.1 KEGG: dds:Ddes_2030 spermine synthase; hypothetical protein 913140 12869152 Deval_0752 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701554.1 911392 D 573059 CDS YP_005701555.1 387152619 12869153 complement(913454..914071) 1 NC_017310.1 PFAM: NADPH-dependent FMN reductase; KEGG: dba:Dbac_0455 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 914071 12869153 Deval_0753 Desulfovibrio vulgaris RCH1 NADPH-dependent FMN reductase YP_005701555.1 913454 R 573059 CDS YP_005701556.1 387152620 12869154 complement(914475..915074) 1 NC_017310.1 KEGG: dal:Dalk_0240 hypothetical protein; hypothetical protein 915074 12869154 Deval_0754 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701556.1 914475 R 573059 CDS YP_005701557.1 387152621 12869155 complement(915086..915775) 1 NC_017310.1 KEGG: drt:Dret_1156 OmpA/MotB domain protein; hypothetical protein 915775 12869155 Deval_0755 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701557.1 915086 R 573059 CDS YP_005701558.1 387152622 12869157 complement(916149..917330) 1 NC_017310.1 TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: dde:Dde_1081 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 917330 12869157 Deval_0756 Desulfovibrio vulgaris RCH1 arginine biosynthesis bifunctional protein ArgJ YP_005701558.1 916149 R 573059 CDS YP_005701559.1 387152623 12869158 complement(917609..920110) 1 NC_017310.1 KEGG: dds:Ddes_1709 preprotein translocase, SecA subunit; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; SEC-C motif domain protein; Preprotein translocase subunit SecA 920110 12869158 Deval_0757 Desulfovibrio vulgaris RCH1 Preprotein translocase subunit SecA YP_005701559.1 917609 R 573059 CDS YP_005701560.1 387152624 12869159 complement(920273..921595) 1 NC_017310.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative; hypothetical protein 921595 12869159 Deval_0758 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701560.1 920273 R 573059 CDS YP_005701561.1 387152625 12869160 complement(921743..923158) 1 NC_017310.1 KEGG: dde:Dde_1087 glycolate oxidase, subunit GlcD, putative; PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase 923158 12869160 Deval_0759 Desulfovibrio vulgaris RCH1 D-lactate dehydrogenase YP_005701561.1 921743 R 573059 CDS YP_005701562.1 387152626 12869161 complement(923187..923651) 1 NC_017310.1 KEGG: dde:Dde_1088 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; SsrA-binding protein 923651 12869161 Deval_0760 Desulfovibrio vulgaris RCH1 SsrA-binding protein YP_005701562.1 923187 R 573059 CDS YP_005701563.1 387152627 12869162 complement(923663..925435) 1 NC_017310.1 KEGG: dde:Dde_1089 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; phosphoenolpyruvate-protein phosphotransferase 925435 12869162 Deval_0761 Desulfovibrio vulgaris RCH1 phosphoenolpyruvate-protein phosphotransferase YP_005701563.1 923663 R 573059 CDS YP_005701564.1 387152628 12869163 complement(925446..925739) 1 NC_017310.1 KEGG: dde:Dde_1090 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; phosphotransferase system, phosphocarrier protein HPr 925739 12869163 Deval_0762 Desulfovibrio vulgaris RCH1 phosphotransferase system, phosphocarrier protein HPr YP_005701564.1 925446 R 573059 CDS YP_005701565.1 387152629 12869164 complement(925767..926525) 1 NC_017310.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dde:Dde_1091 PTS system, IID component, putative; PTS system mannose/fructose/sorbose family transporter subunit IID 926525 12869164 Deval_0763 Desulfovibrio vulgaris RCH1 PTS system mannose/fructose/sorbose family transporter subunit IID YP_005701565.1 925767 R 573059 CDS YP_005701566.1 387152630 12869165 complement(926941..927768) 1 NC_017310.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_1092 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 927768 12869165 Deval_0764 Desulfovibrio vulgaris RCH1 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_005701566.1 926941 R 573059 CDS YP_005701567.1 387152631 12869166 complement(927710..928114) 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0102; KEGG: dds:Ddes_1792 protein of unknown function UPF0102; hypothetical protein 928114 12869166 Deval_0765 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701567.1 927710 R 573059 CDS YP_005701568.1 387152632 12869167 complement(928108..928770) 1 NC_017310.1 KEGG: dde:Dde_1094 ribonuclease HII; PFAM: ribonuclease HII/HIII; Ribonuclease H 928770 12869167 Deval_0766 Desulfovibrio vulgaris RCH1 Ribonuclease H YP_005701568.1 928108 R 573059 CDS YP_005701569.1 387152633 12869168 complement(929121..929468) 1 NC_017310.1 KEGG: dds:Ddes_1790 ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; 50S ribosomal protein L19 929468 12869168 Deval_0767 Desulfovibrio vulgaris RCH1 50S ribosomal protein L19 YP_005701569.1 929121 R 573059 CDS YP_005701570.1 387152634 12869169 complement(929522..930799) 1 NC_017310.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 930799 12869169 Deval_0768 Desulfovibrio vulgaris RCH1 tRNA (guanine-N1)-methyltransferase YP_005701570.1 929522 R 573059 CDS YP_005701571.1 387152635 12869170 complement(930814..931344) 1 NC_017310.1 KEGG: dde:Dde_1097 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; 16S rRNA processing protein RimM 931344 12869170 Deval_0769 Desulfovibrio vulgaris RCH1 16S rRNA processing protein RimM YP_005701571.1 930814 R 573059 CDS YP_005701572.1 387152636 12869171 complement(931368..931601) 1 NC_017310.1 KEGG: dde:Dde_1098 hypothetical protein; hypothetical protein 931601 12869171 Deval_0770 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701572.1 931368 R 573059 CDS YP_005701573.1 387152637 12869172 complement(931685..931924) 1 NC_017310.1 KEGG: dde:Dde_1099 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; 30S ribosomal protein S16 931924 12869172 Deval_0771 Desulfovibrio vulgaris RCH1 30S ribosomal protein S16 YP_005701573.1 931685 R 573059 CDS YP_005701574.1 387152638 12869173 complement(932003..933529) 1 NC_017310.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dds:Ddes_1804 signal recognition particle protein; SMART: AAA ATPase; signal recognition particle protein 933529 12869173 Deval_0772 Desulfovibrio vulgaris RCH1 signal recognition particle protein YP_005701574.1 932003 R 573059 CDS YP_005701575.1 387152639 12869174 complement(933758..934939) 1 NC_017310.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_1103 aspartate aminotransferase; class I and II aminotransferase 934939 12869174 Deval_0773 Desulfovibrio vulgaris RCH1 class I and II aminotransferase YP_005701575.1 933758 R 573059 CDS YP_005701576.1 387152640 12869175 complement(935048..935305) 1 NC_017310.1 KEGG: dsa:Desal_0226 hypothetical protein; hypothetical protein 935305 12869175 Deval_0774 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701576.1 935048 R 573059 CDS YP_005701577.1 387152641 12869176 complement(935268..936866) 1 NC_017310.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like; 3-phosphoshikimate 1- carboxyvinyltransferase 936866 12869176 Deval_0775 Desulfovibrio vulgaris RCH1 3-phosphoshikimate 1- carboxyvinyltransferase YP_005701577.1 935268 R 573059 CDS YP_005701578.1 387152642 12869177 937640..938143 1 NC_017310.1 TIGRFAM: adenylylsulfate reductase, beta subunit; KEGG: dma:DMR_05390 adenylylsulphate reductase alpha subunit; adenylylsulfate reductase subunit beta 938143 12869177 Deval_0776 Desulfovibrio vulgaris RCH1 adenylylsulfate reductase subunit beta YP_005701578.1 937640 D 573059 CDS YP_005701579.1 387152643 12869178 938185..940179 1 NC_017310.1 KEGG: dde:Dde_1110 adenylylsulfate reductase subunit alpha; TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; adenylylsulfate reductase subunit alpha 940179 12869178 Deval_0777 Desulfovibrio vulgaris RCH1 adenylylsulfate reductase subunit alpha YP_005701579.1 938185 D 573059 CDS YP_005701580.1 387152644 12869179 940325..941563 1 NC_017310.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dde:Dde_1111 heterodisulfide reductase, putative; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 941563 12869179 Deval_0778 Desulfovibrio vulgaris RCH1 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_005701580.1 940325 D 573059 CDS YP_005701581.1 387152645 12869180 941570..943846 1 NC_017310.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit 943846 12869180 Deval_0779 Desulfovibrio vulgaris RCH1 methyl-viologen-reducing hydrogenase delta subunit YP_005701581.1 941570 D 573059 CDS YP_005701582.1 387152646 12869181 943860..945014 1 NC_017310.1 KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit, putative; heterodisulfide reductase, transmembrane subunit 945014 12869181 Deval_0780 Desulfovibrio vulgaris RCH1 heterodisulfide reductase, transmembrane subunit YP_005701582.1 943860 D 573059 CDS YP_005701583.1 387152647 12869182 945104..945850 1 NC_017310.1 KEGG: dde:Dde_1114 hypothetical protein; hypothetical protein 945850 12869182 Deval_0781 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701583.1 945104 D 573059 CDS YP_005701584.1 387152648 12869183 946064..946861 1 NC_017310.1 KEGG: pmy:Pmen_3734 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 946861 12869183 Deval_0782 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005701584.1 946064 D 573059 CDS YP_005701585.1 387152649 12869184 complement(946917..948101) 1 NC_017310.1 PFAM: protein of unknown function UPF0027; KEGG: pmx:PERMA_0847 GP160; hypothetical protein 948101 12869184 Deval_0783 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701585.1 946917 R 573059 CDS YP_005701586.1 387152650 12869185 complement(948602..949132) 1 NC_017310.1 KEGG: dde:Dde_2578 AsnC family transcriptional regulator; AsnC family transcriptional regulator 949132 12869185 Deval_0784 Desulfovibrio vulgaris RCH1 AsnC family transcriptional regulator YP_005701586.1 948602 R 573059 CDS YP_005701587.1 387152651 12869186 complement(949142..950323) 1 NC_017310.1 KEGG: dba:Dbac_2393 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 950323 12869186 Deval_0785 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005701587.1 949142 R 573059 CDS YP_005701588.1 387152652 12869187 complement(950323..951315) 1 NC_017310.1 KEGG: dde:Dde_2576 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; porphobilinogen synthase 951315 12869187 Deval_0786 Desulfovibrio vulgaris RCH1 porphobilinogen synthase YP_005701588.1 950323 R 573059 CDS YP_005701589.1 387152653 12869188 complement(951325..952506) 1 NC_017310.1 KEGG: dde:Dde_2575 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 952506 12869188 Deval_0787 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005701589.1 951325 R 573059 CDS YP_005701590.1 387152654 12869189 complement(952822..953505) 1 NC_017310.1 KEGG: dde:Dde_2573 putative lipoprotein; putative lipoprotein 953505 12869189 Deval_0788 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005701590.1 952822 R 573059 CDS YP_005701591.1 387152655 12869190 complement(953590..953925) 1 NC_017310.1 KEGG: dde:Dde_1115 hypothetical protein; hypothetical protein 953925 12869190 Deval_0789 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701591.1 953590 R 573059 CDS YP_005701592.1 387152656 12869191 complement(953940..955220) 1 NC_017310.1 KEGG: dds:Ddes_0595 hypothetical protein; hypothetical protein 955220 12869191 Deval_0790 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701592.1 953940 R 573059 CDS YP_005701593.1 387152657 12869192 complement(955297..956883) 1 NC_017310.1 KEGG: dde:Dde_1117 hypothetical protein; hypothetical protein 956883 12869192 Deval_0791 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701593.1 955297 R 573059 CDS YP_005701594.1 387152658 12869193 complement(957054..958172) 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 958172 12869193 Deval_0792 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005701594.1 957054 R 573059 CDS YP_005701595.1 387152659 12869194 complement(958332..959237) 1 NC_017310.1 KEGG: dde:Dde_1119 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; flagellar protein FliS 959237 12869194 Deval_0793 Desulfovibrio vulgaris RCH1 flagellar protein FliS YP_005701595.1 958332 R 573059 CDS YP_005701596.1 387152660 12869195 complement(959248..960975) 1 NC_017310.1 PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2, putative; flagellar hook-associated 2 domain-containing protein 960975 12869195 Deval_0794 Desulfovibrio vulgaris RCH1 flagellar hook-associated 2 domain-containing protein YP_005701596.1 959248 R 573059 CDS YP_005701597.1 387152661 12869196 complement(961113..961898) 1 NC_017310.1 PFAM: peptidase M22 glycoprotease; KEGG: dds:Ddes_0514 peptidase M22 glycoprotease; peptidase M22 glycoprotease 961898 12869196 Deval_0795 Desulfovibrio vulgaris RCH1 peptidase M22 glycoprotease YP_005701597.1 961113 R 573059 CDS YP_005701598.1 387152662 12869197 complement(961895..962959) 1 NC_017310.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_1122 peptidase RseP; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 962959 12869197 Deval_0796 Desulfovibrio vulgaris RCH1 membrane-associated zinc metalloprotease YP_005701598.1 961895 R 573059 CDS YP_005701599.1 387152663 12869198 complement(962956..964182) 1 NC_017310.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dde:Dde_1123 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 964182 12869198 Deval_0797 Desulfovibrio vulgaris RCH1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005701599.1 962956 R 573059 CDS YP_005701600.1 387152664 12869199 complement(964179..965681) 1 NC_017310.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase, putative; pyridoxal-dependent decarboxylase 965681 12869199 Deval_0798 Desulfovibrio vulgaris RCH1 pyridoxal-dependent decarboxylase YP_005701600.1 964179 R 573059 CDS YP_005701601.1 387152665 12869200 complement(965681..966487) 1 NC_017310.1 PFAM: phosphatidate cytidylyltransferase; KEGG: dde:Dde_1125 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 966487 12869200 Deval_0799 Desulfovibrio vulgaris RCH1 phosphatidate cytidylyltransferase YP_005701601.1 965681 R 573059 CDS YP_005701602.1 387152666 12869201 complement(966484..967227) 1 NC_017310.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: dma:DMR_37900 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 967227 12869201 Deval_0800 Desulfovibrio vulgaris RCH1 undecaprenyl diphosphate synthase YP_005701602.1 966484 R 573059 CDS YP_005701603.1 387152667 12869202 complement(967345..967905) 1 NC_017310.1 KEGG: dds:Ddes_0519 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; ribosome recycling factor 967905 12869202 Deval_0801 Desulfovibrio vulgaris RCH1 ribosome recycling factor YP_005701603.1 967345 R 573059 CDS YP_005701604.1 387152668 12869203 complement(967909..968625) 1 NC_017310.1 KEGG: dde:Dde_1129 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 968625 12869203 Deval_0802 Desulfovibrio vulgaris RCH1 uridylate kinase YP_005701604.1 967909 R 573059 CDS YP_005701605.1 387152669 12869204 complement(968674..969441) 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1130 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 969441 12869204 Deval_0803 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005701605.1 968674 R 573059 CDS YP_005701606.1 387152670 12869205 complement(969704..970567) 1 NC_017310.1 KEGG: lip:LI0378 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; translation elongation factor Ts 970567 12869205 Deval_0804 Desulfovibrio vulgaris RCH1 translation elongation factor Ts YP_005701606.1 969704 R 573059 CDS YP_005701607.1 387152671 12869206 complement(970594..971358) 1 NC_017310.1 KEGG: dds:Ddes_0346 ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; 30S ribosomal protein S2 971358 12869206 Deval_0805 Desulfovibrio vulgaris RCH1 30S ribosomal protein S2 YP_005701607.1 970594 R 573059 CDS YP_005701608.1 387152672 12869207 complement(971705..972484) 1 NC_017310.1 KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 972484 12869207 Deval_0806 Desulfovibrio vulgaris RCH1 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_005701608.1 971705 R 573059 CDS YP_005701609.1 387152673 12869208 complement(972512..974176) 1 NC_017310.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1137 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase 974176 12869208 Deval_0807 Desulfovibrio vulgaris RCH1 RNA-metabolising metallo-beta-lactamase YP_005701609.1 972512 R 573059 CDS YP_005701610.1 387152674 12869209 complement(974649..975005) 1 NC_017310.1 KEGG: ppw:PputW619_3452 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 975005 12869209 Deval_0808 Desulfovibrio vulgaris RCH1 TraR/DksA family transcriptional regulator YP_005701610.1 974649 R 573059 CDS YP_005701611.1 387152675 12869210 complement(975256..975540) 1 NC_017310.1 KEGG: mla:Mlab_0696 hypothetical protein; hypothetical protein 975540 12869210 Deval_0809 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701611.1 975256 R 573059 CDS YP_005701612.1 387152676 12869211 complement(976035..978101) 1 NC_017310.1 KEGG: dde:Dde_2741 elongation factor G; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; small GTP-binding protein 978101 12869211 Deval_0810 Desulfovibrio vulgaris RCH1 small GTP-binding protein YP_005701612.1 976035 R 573059 CDS YP_005701613.1 387152677 12869212 978307..978771 1 NC_017310.1 KEGG: dde:Dde_2740 hypothetical protein; hypothetical protein 978771 12869212 Deval_0811 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701613.1 978307 D 573059 CDS YP_005701614.1 387152678 12869213 979045..979302 1 NC_017310.1 PFAM: glutaredoxin; KEGG: dde:Dde_2739 hypothetical protein; glutaredoxin 979302 12869213 Deval_0812 Desulfovibrio vulgaris RCH1 glutaredoxin YP_005701614.1 979045 D 573059 CDS YP_005701615.1 387152679 12869214 979299..979643 1 NC_017310.1 KEGG: dde:Dde_2738 hypothetical protein; hypothetical protein 979643 12869214 Deval_0813 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701615.1 979299 D 573059 CDS YP_005701616.1 387152680 12869215 complement(979870..980058) 1 NC_017310.1 KEGG: tgo:TGME49_090660 polypyrimidine track-binding protein, putative; polypyrimidine track-binding protein, putative 980058 12869215 Deval_0814 Desulfovibrio vulgaris RCH1 polypyrimidine track-binding protein, putative YP_005701616.1 979870 R 573059 CDS YP_005701617.1 387152681 12869216 complement(980085..980873) 1 NC_017310.1 PFAM: amidohydrolase 2; KEGG: dde:Dde_2736 amidohydrolase family protein; amidohydrolase 2 980873 12869216 Deval_0815 Desulfovibrio vulgaris RCH1 amidohydrolase 2 YP_005701617.1 980085 R 573059 CDS YP_005701618.1 387152682 12869217 complement(980924..981334) 1 NC_017310.1 KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase; manually curated; PFAM: thioesterase superfamily protein; thioesterase superfamily protein 981334 12869217 Deval_0816 Desulfovibrio vulgaris RCH1 thioesterase superfamily protein YP_005701618.1 980924 R 573059 CDS YP_005701619.1 387152683 12869218 981389..982663 1 NC_017310.1 KEGG: dde:Dde_2733 transglycosylase, putative; manually curated; PFAM: MltA domain protein; 3D domain-containing protein; MltA domain-containing protein 982663 12869218 Deval_0817 Desulfovibrio vulgaris RCH1 MltA domain-containing protein YP_005701619.1 981389 D 573059 CDS YP_005701620.1 387152684 12869219 982886..984466 1 NC_017310.1 SMART: response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein; manually curated; KEGG: ppd:Ppro_3010 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; response regulator receiver; PAS fold domain protein; ATP-binding region ATPase domain protein; signal transduction histidine kinase 984466 12869219 Deval_0818 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase YP_005701620.1 982886 D 573059 CDS YP_005701621.1 387152685 12869220 complement(984562..985698) 1 NC_017310.1 KEGG: dde:Dde_2732 phosphoglycerate mutase; PFAM: metalloenzyme domain protein; phosphoglycerate mutase 985698 12869220 Deval_0819 Desulfovibrio vulgaris RCH1 phosphoglycerate mutase YP_005701621.1 984562 R 573059 CDS YP_005701622.1 387152686 12869221 complement(985698..986972) 1 NC_017310.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: dde:Dde_2731 homoserine dehydrogenase; homoserine dehydrogenase 986972 12869221 Deval_0820 Desulfovibrio vulgaris RCH1 homoserine dehydrogenase YP_005701622.1 985698 R 573059 CDS YP_005701623.1 387152687 12869222 complement(986974..988167) 1 NC_017310.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase; class I and II aminotransferase 988167 12869222 Deval_0821 Desulfovibrio vulgaris RCH1 class I and II aminotransferase YP_005701623.1 986974 R 573059 CDS YP_005701624.1 387152688 12869223 988291..988818 1 NC_017310.1 KEGG: dde:Dde_2728 shikimate kinase II; PFAM: shikimate kinase; shikimate kinase 988818 12869223 Deval_0822 Desulfovibrio vulgaris RCH1 shikimate kinase YP_005701624.1 988291 D 573059 CDS YP_005701625.1 387152689 12869224 988907..989329 1 NC_017310.1 KEGG: dde:Dde_2727 universal stress protein; manually curated; PFAM: UspA domain-containing protein; UspA domain-containing protein 989329 12869224 Deval_0823 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005701625.1 988907 D 573059 CDS YP_005701626.1 387152690 12869225 989520..990584 1 NC_017310.1 TIGRFAM: chorismate synthase; KEGG: dde:Dde_2726 chorismate synthase; PFAM: chorismate synthase; chorismate synthase 990584 12869225 Deval_0824 Desulfovibrio vulgaris RCH1 chorismate synthase YP_005701626.1 989520 D 573059 CDS YP_005701627.1 387152691 12869226 990757..992985 1 NC_017310.1 TIGRFAM: helicase, RecD/TraA family; KEGG: dde:Dde_2725 helicase RecD/TraA; SMART: AAA ATPase; RecD/TraA family helicase 992985 12869226 Deval_0825 Desulfovibrio vulgaris RCH1 RecD/TraA family helicase YP_005701627.1 990757 D 573059 CDS YP_005701628.1 387152692 12869227 993010..994389 1 NC_017310.1 PFAM: NLP/P60 protein; KEGG: dds:Ddes_1599 NLP/P60 protein; NLP/P60 protein 994389 12869227 Deval_0826 Desulfovibrio vulgaris RCH1 NLP/P60 protein YP_005701628.1 993010 D 573059 CDS YP_005701629.1 387152693 12869228 994391..995767 1 NC_017310.1 TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_2722 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 995767 12869228 Deval_0827 Desulfovibrio vulgaris RCH1 MiaB family RNA modification protein YP_005701629.1 994391 D 573059 CDS YP_005701630.1 387152694 12869229 995852..996733 1 NC_017310.1 PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; KEGG: dde:Dde_2721 hypothetical protein; hypothetical protein 996733 12869229 Deval_0828 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701630.1 995852 D 573059 CDS YP_005701631.1 387152695 12869230 996730..996990 1 NC_017310.1 PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein; hypothetical protein 996990 12869230 Deval_0829 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701631.1 996730 D 573059 CDS YP_005701632.1 387152696 12869231 996990..997613 1 NC_017310.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: dde:Dde_2719 guanylate kinase; PFAM: guanylate kinase; guanylate kinase 997613 12869231 Deval_0830 Desulfovibrio vulgaris RCH1 guanylate kinase YP_005701632.1 996990 D 573059 CDS YP_005701633.1 387152697 12869232 997613..998320 1 NC_017310.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: dde:Dde_2718 orotidine-5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 998320 12869232 Deval_0831 Desulfovibrio vulgaris RCH1 orotidine 5'-phosphate decarboxylase YP_005701633.1 997613 D 573059 CDS YP_005701634.1 387152698 12869233 998453..999310 1 NC_017310.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2717 TPR repeat-containing protein; hypothetical protein 999310 12869233 Deval_0832 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701634.1 998453 D 573059 CDS YP_005701635.1 387152699 12869234 999315..1000172 1 NC_017310.1 KEGG: dde:Dde_2716 putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1000172 12869234 Deval_0833 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005701635.1 999315 D 573059 CDS YP_005701636.1 387152700 12869235 1000229..1001944 1 NC_017310.1 KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; single-stranded-DNA-specific exonuclease RecJ 1001944 12869235 Deval_0834 Desulfovibrio vulgaris RCH1 single-stranded-DNA-specific exonuclease RecJ YP_005701636.1 1000229 D 573059 CDS YP_005701637.1 387152701 12869236 complement(1002043..1002939) 1 NC_017310.1 KEGG: dde:Dde_2714 lipoyl synthase; PFAM: Radical SAM domain protein; manually curated; TIGRFAM: lipoic acid synthetase; SMART: Elongator protein 3/MiaB/NifB; lipoic acid synthetase 1002939 12869236 Deval_0835 Desulfovibrio vulgaris RCH1 lipoic acid synthetase YP_005701637.1 1002043 R 573059 CDS YP_005701638.1 387152702 12869237 complement(1002869..1003543) 1 NC_017310.1 TIGRFAM: lipoate-protein ligase B; KEGG: dde:Dde_2713 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 1003543 12869237 Deval_0836 Desulfovibrio vulgaris RCH1 lipoate-protein ligase B YP_005701638.1 1002869 R 573059 CDS YP_005701639.1 387152703 12869238 complement(1003512..1005404) 1 NC_017310.1 PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein; Ribosomal small subunit Rsm22 1005404 12869238 Deval_0837 Desulfovibrio vulgaris RCH1 Ribosomal small subunit Rsm22 YP_005701639.1 1003512 R 573059 CDS YP_005701640.1 387152704 12869239 complement(1005416..1007020) 1 NC_017310.1 KEGG: dde:Dde_2711 iron-sulfur cluster-binding protein, putative; iron-sulfur cluster-binding protein, putative 1007020 12869239 Deval_0838 Desulfovibrio vulgaris RCH1 iron-sulfur cluster-binding protein, putative YP_005701640.1 1005416 R 573059 CDS YP_005701641.1 387152705 12869240 1007162..1007608 1 NC_017310.1 KEGG: dde:Dde_2710 hypothetical protein; hypothetical protein 1007608 12869240 Deval_0839 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701641.1 1007162 D 573059 CDS YP_005701642.1 387152706 12869241 1007744..1008724 1 NC_017310.1 KEGG: dde:Dde_2708 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM 1008724 12869241 Deval_0840 Desulfovibrio vulgaris RCH1 flagellar motor switch protein FliM YP_005701642.1 1007744 D 573059 CDS YP_005701643.1 387152707 12869242 complement(1009324..1010217) 1 NC_017310.1 TIGRFAM: tRNA pseudouridine synthase A; KEGG: dde:Dde_2707 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A 1010217 12869242 Deval_0841 Desulfovibrio vulgaris RCH1 tRNA pseudouridine synthase A YP_005701643.1 1009324 R 573059 CDS YP_005701644.1 387152708 12869243 complement(1010219..1010920) 1 NC_017310.1 KEGG: dde:Dde_2706 hypothetical protein; hypothetical protein 1010920 12869243 Deval_0842 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701644.1 1010219 R 573059 CDS YP_005701645.1 387152709 12869244 complement(1010880..1011317) 1 NC_017310.1 TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 putative flagellar FliJ protein; flagellar export protein FliJ 1011317 12869244 Deval_0843 Desulfovibrio vulgaris RCH1 flagellar export protein FliJ YP_005701645.1 1010880 R 573059 CDS YP_005701646.1 387152710 12869245 complement(1011388..1012125) 1 NC_017310.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dde:Dde_2704 cobalamin-5'-phosphate synthase; cobalamin-5-phosphate synthase CobS 1012125 12869245 Deval_0844 Desulfovibrio vulgaris RCH1 cobalamin-5-phosphate synthase CobS YP_005701646.1 1011388 R 573059 CDS YP_005701647.1 387152711 12869246 complement(1012504..1013292) 1 NC_017310.1 PFAM: protein of unknown function DUF62; KEGG: dsa:Desal_3688 protein of unknown function DUF62; hypothetical protein 1013292 12869246 Deval_0845 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701647.1 1012504 R 573059 CDS YP_005701648.1 387152712 12869247 complement(1013326..1013970) 1 NC_017310.1 PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; KEGG: dde:Dde_2702 redox-sensing transcriptional repressor REX; CoA-binding protein 1013970 12869247 Deval_0846 Desulfovibrio vulgaris RCH1 CoA-binding protein YP_005701648.1 1013326 R 573059 CDS YP_005701649.1 387152713 12869248 complement(1014075..1014404) 1 NC_017310.1 KEGG: dde:Dde_2701 ATP synthase F0, C subunit; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; ATP synthase F0 subunit C 1014404 12869248 Deval_0847 Desulfovibrio vulgaris RCH1 ATP synthase F0 subunit C YP_005701649.1 1014075 R 573059 CDS YP_005701650.1 387152714 12869249 complement(1014459..1015160) 1 NC_017310.1 KEGG: dde:Dde_2700 ATP synthase F0, A subunit; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; ATP synthase F0 subunit A 1015160 12869249 Deval_0848 Desulfovibrio vulgaris RCH1 ATP synthase F0 subunit A YP_005701650.1 1014459 R 573059 CDS YP_005701651.1 387152715 12869250 complement(1015165..1015599) 1 NC_017310.1 KEGG: dde:Dde_2699 hypothetical protein; manually curated; PFAM: ATP synthase I chain; ATP synthase I chain 1015599 12869250 Deval_0849 Desulfovibrio vulgaris RCH1 ATP synthase I chain YP_005701651.1 1015165 R 573059 CDS YP_005701652.1 387152716 12869251 complement(1015568..1015846) 1 NC_017310.1 KEGG: dde:Dde_2698 ATP synthase protein I; ATP synthase protein I 1015846 12869251 Deval_0850 Desulfovibrio vulgaris RCH1 ATP synthase protein I YP_005701652.1 1015568 R 573059 CDS YP_005701653.1 387152717 12869252 1016034..1016501 1 NC_017310.1 KEGG: geo:Geob_0985 pyridoxamine 5'-phosphate oxidase-related FMN-binding; hypothetical protein 1016501 12869252 Deval_0851 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701653.1 1016034 D 573059 CDS YP_005701654.1 387152718 12869253 complement(1016544..1017026) 1 NC_017310.1 KEGG: dsa:Desal_0603 cytochrome c family protein; hypothetical protein 1017026 12869253 Deval_0852 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701654.1 1016544 R 573059 CDS YP_005701655.1 387152719 12869254 complement(1017583..1017981) 1 NC_017310.1 PFAM: Endoribonuclease L-PSP; KEGG: cbl:CLK_1449 endoribonuclease L-PSP family protein; endoribonuclease L-PSP 1017981 12869254 Deval_0853 Desulfovibrio vulgaris RCH1 endoribonuclease L-PSP YP_005701655.1 1017583 R 573059 CDS YP_005701656.1 387152720 12869255 complement(1018037..1019443) 1 NC_017310.1 KEGG: dde:Dde_2695 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; TrmA family RNA methyltransferase 1019443 12869255 Deval_0854 Desulfovibrio vulgaris RCH1 TrmA family RNA methyltransferase YP_005701656.1 1018037 R 573059 CDS YP_005701657.1 387152721 12869256 complement(1019886..1020794) 1 NC_017310.1 KEGG: dde:Dde_2693 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 1020794 12869256 Deval_0855 Desulfovibrio vulgaris RCH1 glucose-1-phosphate thymidylyltransferase YP_005701657.1 1019886 R 573059 CDS YP_005701658.1 387152722 12869257 1021372..1021680 1 NC_017310.1 KEGG: dde:Dde_2692 50S ribosomal protein L21P; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; 50S ribosomal protein L21 1021680 12869257 Deval_0856 Desulfovibrio vulgaris RCH1 50S ribosomal protein L21 YP_005701658.1 1021372 D 573059 CDS YP_005701659.1 387152723 12869258 1021701..1021964 1 NC_017310.1 KEGG: dde:Dde_2691 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; 50S ribosomal protein L27 1021964 12869258 Deval_0857 Desulfovibrio vulgaris RCH1 50S ribosomal protein L27 YP_005701659.1 1021701 D 573059 CDS YP_005701660.1 387152724 12869259 1022113..1023213 1 NC_017310.1 KEGG: dds:Ddes_2248 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP-binding protein Obg/CgtA 1023213 12869259 Deval_0858 Desulfovibrio vulgaris RCH1 GTP-binding protein Obg/CgtA YP_005701660.1 1022113 D 573059 CDS YP_005701661.1 387152725 12869260 1023231..1024373 1 NC_017310.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: dde:Dde_2689 gamma-glutamyl kinase; SMART: PUA domain containing protein; glutamate 5-kinase 1024373 12869260 Deval_0859 Desulfovibrio vulgaris RCH1 glutamate 5-kinase YP_005701661.1 1023231 D 573059 CDS YP_005701662.1 387152726 12869261 1024452..1025258 1 NC_017310.1 KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1025258 12869261 Deval_0860 Desulfovibrio vulgaris RCH1 phosphomethylpyrimidine kinase YP_005701662.1 1024452 D 573059 CDS YP_005701663.1 387152727 12869262 1025891..1027066 1 NC_017310.1 KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase 1027066 12869262 Deval_0861 Desulfovibrio vulgaris RCH1 histidine kinase YP_005701663.1 1025891 D 573059 CDS YP_005701664.1 387152728 12869263 1027056..1028300 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; KEGG: cyn:Cyan7425_3275 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: response regulator receiver; PAS domain containing protein; putative PAS/PAC sensor protein 1028300 12869263 Deval_0862 Desulfovibrio vulgaris RCH1 putative PAS/PAC sensor protein YP_005701664.1 1027056 D 573059 CDS YP_005701665.1 387152729 12869264 1028293..1028541 1 NC_017310.1 KEGG: olu:OSTLU_40934 predicted protein; hypothetical protein 1028541 12869264 Deval_0863 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701665.1 1028293 D 573059 CDS YP_005701666.1 387152730 12869265 1028568..1031042 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1031042 12869265 Deval_0864 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_005701666.1 1028568 D 573059 CDS YP_005701667.1 387152731 12869266 1031675..1031962 1 NC_017310.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_2684 excisionase/Xis, DNA-binding; excisionase family DNA binding domain-containing protein 1031962 12869266 Deval_0865 Desulfovibrio vulgaris RCH1 excisionase family DNA binding domain-containing protein YP_005701667.1 1031675 D 573059 CDS YP_005701668.1 387152732 12869267 1031976..1032362 1 NC_017310.1 KEGG: dds:Ddes_0042 hypothetical protein; hypothetical protein 1032362 12869267 Deval_0866 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701668.1 1031976 D 573059 CDS YP_005701669.1 387152733 12869268 1032486..1032794 1 NC_017310.1 KEGG: dde:Dde_2682 isoamylase protein-like; isoamylase protein-like protein 1032794 12869268 Deval_0867 Desulfovibrio vulgaris RCH1 isoamylase protein-like protein YP_005701669.1 1032486 D 573059 CDS YP_005701670.1 387152734 12869269 1033194..1033943 1 NC_017310.1 KEGG: dde:Dde_2681 hypothetical protein; hypothetical protein 1033943 12869269 Deval_0868 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701670.1 1033194 D 573059 CDS YP_005701671.1 387152735 12869270 1033956..1034687 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1034687 12869270 Deval_0869 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005701671.1 1033956 D 573059 CDS YP_005701672.1 387152736 12869271 1035039..1037933 1 NC_017310.1 PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: dde:Dde_2677 PreP peptidase; Peptidase M16C associated domain-containing protein 1037933 12869271 Deval_0870 Desulfovibrio vulgaris RCH1 Peptidase M16C associated domain-containing protein YP_005701672.1 1035039 D 573059 CDS YP_005701673.1 387152737 12869272 1038010..1038444 1 NC_017310.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein; ferric uptake regulator family protein 1038444 12869272 Deval_0871 Desulfovibrio vulgaris RCH1 ferric uptake regulator family protein YP_005701673.1 1038010 D 573059 CDS YP_005701674.1 387152738 12869273 1038938..1040677 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0324; KEGG: dde:Dde_0876 hypothetical protein; hypothetical protein 1040677 12869273 Deval_0872 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701674.1 1038938 D 573059 CDS YP_005701675.1 387152739 12869274 1040731..1040988 1 NC_017310.1 KEGG: dsa:Desal_0415 hypothetical protein; hypothetical protein 1040988 12869274 Deval_0873 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701675.1 1040731 D 573059 CDS YP_005701676.1 387152740 12869275 1041074..1043506 1 NC_017310.1 KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 1043506 12869275 Deval_0874 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701676.1 1041074 D 573059 CDS YP_005701677.1 387152741 12869276 1043509..1044939 1 NC_017310.1 KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 1044939 12869276 Deval_0875 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005701677.1 1043509 D 573059 CDS YP_005701678.1 387152742 12869277 complement(1044995..1045900) 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1146 hypothetical protein; hypothetical protein 1045900 12869277 Deval_0876 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701678.1 1044995 R 573059 CDS YP_005701679.1 387152743 12869278 complement(1046076..1046549) 1 NC_017310.1 KEGG: dma:DMR_05070 hypothetical protein; hypothetical protein 1046549 12869278 Deval_0877 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701679.1 1046076 R 573059 CDS YP_005701680.1 387152744 12869279 complement(1046552..1047313) 1 NC_017310.1 PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dsa:Desal_2344 hypothetical protein; nickel transport complex transmembrane protein NikM 1047313 12869279 Deval_0878 Desulfovibrio vulgaris RCH1 nickel transport complex transmembrane protein NikM YP_005701680.1 1046552 R 573059 CDS YP_005701681.1 387152745 12869280 1047468..1048811 1 NC_017310.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dde:Dde_0230 molybdopterin molybdochelatase; SMART: molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 1048811 12869280 Deval_0879 Desulfovibrio vulgaris RCH1 molybdenum cofactor synthesis domain-containing protein YP_005701681.1 1047468 D 573059 CDS YP_005701682.1 387152746 12869281 1048813..1049685 1 NC_017310.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_0229 hypothetical protein; metallophosphoesterase 1049685 12869281 Deval_0880 Desulfovibrio vulgaris RCH1 metallophosphoesterase YP_005701682.1 1048813 D 573059 CDS YP_005701683.1 387152747 12869282 1049879..1051075 1 NC_017310.1 SMART: RNA-binding S4 domain protein; TIGRFAM: tyrosyl-tRNA synthetase; KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 1051075 12869282 Deval_0881 Desulfovibrio vulgaris RCH1 tyrosyl-tRNA synthetase YP_005701683.1 1049879 D 573059 CDS YP_005701684.1 387152748 12869283 complement(1051248..1053584) 1 NC_017310.1 PFAM: Organic solvent tolerance protein; OstA family protein; KEGG: dde:Dde_1413 organic solvent tolerance protein, putative; organic solvent tolerance protein 1053584 12869283 Deval_0882 Desulfovibrio vulgaris RCH1 organic solvent tolerance protein YP_005701684.1 1051248 R 573059 CDS YP_005701685.1 387152749 12869284 1053729..1054859 1 NC_017310.1 TIGRFAM: alanine racemase; KEGG: dba:Dbac_0425 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1054859 12869284 Deval_0883 Desulfovibrio vulgaris RCH1 alanine racemase YP_005701685.1 1053729 D 573059 CDS YP_005701686.1 387152750 12869285 1054997..1055302 1 NC_017310.1 KEGG: dde:Dde_1412 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 1055302 12869285 Deval_0884 Desulfovibrio vulgaris RCH1 30S ribosomal protein S6 YP_005701686.1 1054997 D 573059 CDS YP_005701687.1 387152751 12869286 1055303..1055566 1 NC_017310.1 KEGG: dds:Ddes_2023 ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; 30S ribosomal protein S18 1055566 12869286 Deval_0885 Desulfovibrio vulgaris RCH1 30S ribosomal protein S18 YP_005701687.1 1055303 D 573059 CDS YP_005701688.1 387152752 12869287 1055579..1056082 1 NC_017310.1 KEGG: dds:Ddes_2022 ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like; 50S ribosomal protein L9 1056082 12869287 Deval_0886 Desulfovibrio vulgaris RCH1 50S ribosomal protein L9 YP_005701688.1 1055579 D 573059 CDS YP_005701689.1 387152753 12869288 1056159..1057514 1 NC_017310.1 manually curated; TIGRFAM: replicative DNA helicase; KEGG: dde:Dde_1409 primary replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; replicative DNA helicase 1057514 12869288 Deval_0887 Desulfovibrio vulgaris RCH1 replicative DNA helicase YP_005701689.1 1056159 D 573059 CDS YP_005701690.1 387152754 12869289 complement(1057916..1061980) 1 NC_017310.1 KEGG: dde:Dde_0225 hypothetical protein; hypothetical protein 1061980 12869289 Deval_0888 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701690.1 1057916 R 573059 CDS YP_005701691.1 387152755 12869290 complement(1062442..1062939) 1 NC_017310.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: dds:Ddes_0653 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase 1062939 12869290 Deval_0889 Desulfovibrio vulgaris RCH1 7-cyano-7-deazaguanine reductase YP_005701691.1 1062442 R 573059 CDS YP_005701692.1 387152756 12869291 1063191..1066184 1 NC_017310.1 PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD); Glu/Leu/Phe/Val dehydrogenase 1066184 12869291 Deval_0890 Desulfovibrio vulgaris RCH1 Glu/Leu/Phe/Val dehydrogenase YP_005701692.1 1063191 D 573059 CDS YP_005701693.1 387152757 12869292 1066424..1066600 1 NC_017310.1 KEGG: dde:Dde_1384 hypothetical protein; hypothetical protein 1066600 12869292 Deval_0891 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701693.1 1066424 D 573059 CDS YP_005701694.1 387152758 12869293 1066695..1067513 1 NC_017310.1 KEGG: dba:Dbac_1818 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein 1067513 12869293 Deval_0892 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005701694.1 1066695 D 573059 CDS YP_005701695.1 387152759 12869294 1067783..1068796 1 NC_017310.1 KEGG: dde:Dde_1386 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1068796 12869294 Deval_0893 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005701695.1 1067783 D 573059 CDS YP_005701696.1 387152760 12869295 1068793..1069533 1 NC_017310.1 KEGG: dde:Dde_1387 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1069533 12869295 Deval_0894 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701696.1 1068793 D 573059 CDS YP_005701697.1 387152761 12869296 1069781..1070527 1 NC_017310.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dde:Dde_1388 amino acid transporter LysE; lysine exporter protein LysE/YggA 1070527 12869296 Deval_0895 Desulfovibrio vulgaris RCH1 lysine exporter protein LysE/YggA YP_005701697.1 1069781 D 573059 CDS YP_005701698.1 387152762 12869297 1070527..1071069 1 NC_017310.1 KEGG: dde:Dde_1389 hypothetical protein; hypothetical protein 1071069 12869297 Deval_0896 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701698.1 1070527 D 573059 CDS YP_005701699.1 387152763 12869298 1071069..1071848 1 NC_017310.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dds:Ddes_0652 molybdenum cofactor synthesis domain protein; SMART: molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 1071848 12869298 Deval_0897 Desulfovibrio vulgaris RCH1 molybdenum cofactor synthesis domain-containing protein YP_005701699.1 1071069 D 573059 CDS YP_005701700.1 387152764 12869299 1071887..1073152 1 NC_017310.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1391 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1073152 12869299 Deval_0898 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005701700.1 1071887 D 573059 CDS YP_005701701.1 387152765 12869300 1073155..1074018 1 NC_017310.1 KEGG: dde:Dde_1392 4-hydroxybenzoate octaprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyltransferase 1074018 12869300 Deval_0899 Desulfovibrio vulgaris RCH1 4-hydroxybenzoate polyprenyltransferase YP_005701701.1 1073155 D 573059 CDS YP_005701702.1 387152766 12869301 1074117..1074455 1 NC_017310.1 KEGG: dde:Dde_1393 hypothetical protein; hypothetical protein 1074455 12869301 Deval_0900 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701702.1 1074117 D 573059 CDS YP_005701703.1 387152767 12869302 1074488..1075048 1 NC_017310.1 PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein; hypothetical protein 1075048 12869302 Deval_0901 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701703.1 1074488 D 573059 CDS YP_005701704.1 387152768 12869303 complement(1075191..1076354) 1 NC_017310.1 KEGG: dde:Dde_2384 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver 1076354 12869303 Deval_0902 Desulfovibrio vulgaris RCH1 response regulator receiver YP_005701704.1 1075191 R 573059 CDS YP_005701705.1 387152769 12869304 complement(1076481..1076888) 1 NC_017310.1 KEGG: dde:Dde_2382 hypothetical protein; hypothetical protein 1076888 12869304 Deval_0903 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701705.1 1076481 R 573059 CDS YP_005701706.1 387152770 12869305 1077059..1077913 1 NC_017310.1 KEGG: dma:DMR_43860 putative ABC transporter substrate binding protein precursor; putative ABC transporter substrate binding protein 1077913 12869305 Deval_0904 Desulfovibrio vulgaris RCH1 putative ABC transporter substrate binding protein YP_005701706.1 1077059 D 573059 CDS YP_005701707.1 387152771 12869306 1078098..1079162 1 NC_017310.1 TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: dde:Dde_1178 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase; dihydroxyacetone kinase subunit DhaK 1079162 12869306 Deval_0905 Desulfovibrio vulgaris RCH1 dihydroxyacetone kinase subunit DhaK YP_005701707.1 1078098 D 573059 CDS YP_005701708.1 387152772 12869307 1079341..1079973 1 NC_017310.1 KEGG: dde:Dde_1179 DAK2 domain-containing protein; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; dihydroxyacetone kinase subunit DhaL 1079973 12869307 Deval_0906 Desulfovibrio vulgaris RCH1 dihydroxyacetone kinase subunit DhaL YP_005701708.1 1079341 D 573059 CDS YP_005701709.1 387152773 12869308 1079977..1082541 1 NC_017310.1 KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; PEP-utilising protein mobile region; phosphoenolpyruvate-protein phosphotransferase 1082541 12869308 Deval_0907 Desulfovibrio vulgaris RCH1 phosphoenolpyruvate-protein phosphotransferase YP_005701709.1 1079977 D 573059 CDS YP_005701710.1 387152774 12869309 complement(1082579..1083238) 1 NC_017310.1 KEGG: dma:DMR_17210 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; PHP domain-containing protein 1083238 12869309 Deval_0908 Desulfovibrio vulgaris RCH1 PHP domain-containing protein YP_005701710.1 1082579 R 573059 CDS YP_005701711.1 387152775 12869310 complement(1083240..1083785) 1 NC_017310.1 PFAM: protein of unknown function DUF151; KEGG: dde:Dde_2379 hypothetical protein; hypothetical protein 1083785 12869310 Deval_0909 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701711.1 1083240 R 573059 CDS YP_005701712.1 387152776 12869311 complement(1083779..1085209) 1 NC_017310.1 TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_2378 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 1085209 12869311 Deval_0910 Desulfovibrio vulgaris RCH1 MiaB family RNA modification protein YP_005701712.1 1083779 R 573059 CDS YP_005701713.1 387152777 12869312 complement(1085261..1085506) 1 NC_017310.1 KEGG: dde:Dde_2377 hypothetical protein; hypothetical protein 1085506 12869312 Deval_0911 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701713.1 1085261 R 573059 CDS YP_005701714.1 387152778 12869313 1085698..1085901 1 NC_017310.1 KEGG: dde:Dde_2375 heavy metal-binding domain-containing protein; heavy metal-binding domain-containing protein 1085901 12869313 Deval_0912 Desulfovibrio vulgaris RCH1 heavy metal-binding domain-containing protein YP_005701714.1 1085698 D 573059 CDS YP_005701715.1 387152779 12869314 complement(1086359..1087285) 1 NC_017310.1 KEGG: dde:Dde_1489 carbohydrate kinase; PFAM: PfkB domain protein; adenosine kinase 1087285 12869314 Deval_0913 Desulfovibrio vulgaris RCH1 adenosine kinase YP_005701715.1 1086359 R 573059 CDS YP_005701716.1 387152780 12869315 complement(1087295..1087735) 1 NC_017310.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: rru:Rru_A1673 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 1087735 12869315 Deval_0914 Desulfovibrio vulgaris RCH1 CutA1 divalent ion tolerance protein YP_005701716.1 1087295 R 573059 CDS YP_005701717.1 387152781 12869316 1087850..1088707 1 NC_017310.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 1088707 12869316 Deval_0915 Desulfovibrio vulgaris RCH1 endonuclease III YP_005701717.1 1087850 D 573059 CDS YP_005701718.1 387152782 12869317 1088704..1089522 1 NC_017310.1 KEGG: dde:Dde_1492 hypothetical protein; hypothetical protein 1089522 12869317 Deval_0916 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701718.1 1088704 D 573059 CDS YP_005701719.1 387152783 12869318 1089710..1090672 1 NC_017310.1 KEGG: dde:Dde_1493 response regulator receiver (CheY-like) modulated CheW protein; PFAM: response regulator receiver; CheW domain protein; SMART: response regulator receiver; CheW domain protein; response regulator receiver modulated CheW protein 1090672 12869318 Deval_0917 Desulfovibrio vulgaris RCH1 response regulator receiver modulated CheW protein YP_005701719.1 1089710 D 573059 CDS YP_005701720.1 387152784 12869319 1090751..1091473 1 NC_017310.1 KEGG: dde:Dde_2399 hypothetical protein; hypothetical protein 1091473 12869319 Deval_0918 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701720.1 1090751 D 573059 CDS YP_005701721.1 387152785 12869320 complement(1091746..1091997) 1 NC_017310.1 KEGG: dds:Ddes_1403 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; FmdB family regulatory protein 1091997 12869320 Deval_0919 Desulfovibrio vulgaris RCH1 FmdB family regulatory protein YP_005701721.1 1091746 R 573059 CDS YP_005701722.1 387152786 12869321 1092165..1092752 1 NC_017310.1 KEGG: dde:Dde_1169 peptidase C56, PfpI; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein; Pfpi family intracellular protease 1092752 12869321 Deval_0920 Desulfovibrio vulgaris RCH1 Pfpi family intracellular protease YP_005701722.1 1092165 D 573059 CDS YP_005701723.1 387152787 12869322 complement(1092965..1093900) 1 NC_017310.1 KEGG: dds:Ddes_2009 hypothetical protein; hypothetical protein 1093900 12869322 Deval_0921 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701723.1 1092965 R 573059 CDS YP_005701724.1 387152788 12869323 1094241..1095116 1 NC_017310.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dde:Dde_2525 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1095116 12869323 Deval_0922 Desulfovibrio vulgaris RCH1 5,10-methylenetetrahydrofolate reductase YP_005701724.1 1094241 D 573059 CDS YP_005701725.1 387152789 12869324 1095640..1096695 1 NC_017310.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein; glycosyl transferase family protein 1096695 12869324 Deval_0923 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005701725.1 1095640 D 573059 CDS YP_005701726.1 387152790 12869327 1097306..1099465 1 NC_017310.1 KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like; PFAM: cytochrome c biogenesis protein transmembrane region; Protein-disulfide reductase 1099465 12869327 Deval_0924 Desulfovibrio vulgaris RCH1 Protein-disulfide reductase YP_005701726.1 1097306 D 573059 CDS YP_005701727.1 387152791 12869328 complement(1099576..1100799) 1 NC_017310.1 PFAM: peptidase M24; KEGG: dde:Dde_1305 M24 family peptidase; peptidase M24 1100799 12869328 Deval_0925 Desulfovibrio vulgaris RCH1 peptidase M24 YP_005701727.1 1099576 R 573059 CDS YP_005701728.1 387152792 12869329 1100927..1101349 1 NC_017310.1 SMART: CoA-binding domain protein; KEGG: dde:Dde_1304 coenzyme A binding protein; CoA-binding protein 1101349 12869329 Deval_0926 Desulfovibrio vulgaris RCH1 CoA-binding protein YP_005701728.1 1100927 D 573059 CDS YP_005701729.1 387152793 12869330 1101346..1101801 1 NC_017310.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_1303 hypothetical protein; hypothetical protein 1101801 12869330 Deval_0927 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701729.1 1101346 D 573059 CDS YP_005701730.1 387152794 12869331 1101816..1102802 1 NC_017310.1 KEGG: dde:Dde_1302 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 1102802 12869331 Deval_0928 Desulfovibrio vulgaris RCH1 heat shock protein DnaJ domain-containing protein YP_005701730.1 1101816 D 573059 CDS YP_005701731.1 387152795 12869332 complement(1102944..1103828) 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2856 hypothetical protein; hypothetical protein 1103828 12869332 Deval_0929 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701731.1 1102944 R 573059 CDS YP_005701732.1 387152796 12869333 1104059..1105279 1 NC_017310.1 KEGG: lip:LI0103 hypothetical protein; hypothetical protein 1105279 12869333 Deval_0930 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701732.1 1104059 D 573059 CDS YP_005701733.1 387152797 12869334 complement(1105763..1106212) 1 NC_017310.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: dde:Dde_1443 hypothetical protein; membrane-bound metal-dependent hydrolase 1106212 12869334 Deval_0931 Desulfovibrio vulgaris RCH1 membrane-bound metal-dependent hydrolase YP_005701733.1 1105763 R 573059 CDS YP_005701734.1 387152798 12869335 1106428..1106964 1 NC_017310.1 KEGG: glo:Glov_3081 adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis protein; adenosylcobinamide-phosphate guanylyltransferase 1106964 12869335 Deval_0932 Desulfovibrio vulgaris RCH1 adenosylcobinamide-phosphate guanylyltransferase YP_005701734.1 1106428 D 573059 CDS YP_005701735.1 387152799 12869336 1107143..1107820 1 NC_017310.1 KEGG: dba:Dbac_0437 hypothetical protein; hypothetical protein 1107820 12869336 Deval_0933 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701735.1 1107143 D 573059 CDS YP_005701736.1 387152800 12869337 complement(1108164..1108754) 1 NC_017310.1 KEGG: mbr:MONBRDRAFT_5414 hypothetical protein; hypothetical protein 1108754 12869337 Deval_0934 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701736.1 1108164 R 573059 CDS YP_005701737.1 387152801 12869338 complement(1109518..1118634) 1 NC_017310.1 TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: pfo:Pfl01_1463 VCBS; SMART: von Willebrand factor type A; outer membrane adhesin-like protein 1118634 12869338 Deval_0935 Desulfovibrio vulgaris RCH1 outer membrane adhesin-like protein YP_005701737.1 1109518 R 573059 CDS YP_005701738.1 387152802 12869339 complement(1118799..1120169) 1 NC_017310.1 KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 1120169 12869339 Deval_0936 Desulfovibrio vulgaris RCH1 TolC family type I secretion outer membrane protein YP_005701738.1 1118799 R 573059 CDS YP_005701739.1 387152803 12869340 1120595..1122901 1 NC_017310.1 TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dde:Dde_1418 ATPase; SMART: AAA ATPase; type I secretion system ATPase 1122901 12869340 Deval_0937 Desulfovibrio vulgaris RCH1 type I secretion system ATPase YP_005701739.1 1120595 D 573059 CDS YP_005701740.1 387152804 12869341 1122904..1124250 1 NC_017310.1 KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 1124250 12869341 Deval_0938 Desulfovibrio vulgaris RCH1 HlyD family type I secretion membrane fusion protein YP_005701740.1 1122904 D 573059 CDS YP_005701741.1 387152805 12869342 1124250..1125470 1 NC_017310.1 KEGG: dde:Dde_1420 hypothetical protein; hypothetical protein 1125470 12869342 Deval_0939 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701741.1 1124250 D 573059 CDS YP_005701742.1 387152806 12869343 1125473..1127578 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 1127578 12869343 Deval_0940 Desulfovibrio vulgaris RCH1 putative PAS/PAC sensor protein YP_005701742.1 1125473 D 573059 CDS YP_005701743.1 387152807 12869344 complement(1127797..1128963) 1 NC_017310.1 PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein; SufBD protein 1128963 12869344 Deval_0941 Desulfovibrio vulgaris RCH1 SufBD protein YP_005701743.1 1127797 R 573059 CDS YP_005701744.1 387152808 12869345 complement(1128965..1129741) 1 NC_017310.1 KEGG: dde:Dde_1445 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1129741 12869345 Deval_0942 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701744.1 1128965 R 573059 CDS YP_005701745.1 387152809 12869346 complement(1130242..1130982) 1 NC_017310.1 PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein; rhomboid family protein 1130982 12869346 Deval_0943 Desulfovibrio vulgaris RCH1 rhomboid family protein YP_005701745.1 1130242 R 573059 CDS YP_005701746.1 387152810 12869347 complement(1130994..1132619) 1 NC_017310.1 SMART: RNA-binding S4 domain protein; TIGRFAM: pseudouridine synthase, RluA family; dephospho-CoA kinase; KEGG: dde:Dde_1447 pseudouridine synthase, RluD; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; Dephospho-CoA kinase; RluA family pseudouridine synthase 1132619 12869347 Deval_0944 Desulfovibrio vulgaris RCH1 RluA family pseudouridine synthase YP_005701746.1 1130994 R 573059 CDS YP_005701747.1 387152811 12869348 1132729..1133355 1 NC_017310.1 KEGG: dde:Dde_1448 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 1133355 12869348 Deval_0945 Desulfovibrio vulgaris RCH1 uracil phosphoribosyltransferase YP_005701747.1 1132729 D 573059 CDS YP_005701748.1 387152812 12869349 1133535..1134794 1 NC_017310.1 KEGG: dde:Dde_1449 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 1134794 12869349 Deval_0946 Desulfovibrio vulgaris RCH1 uracil-xanthine permease YP_005701748.1 1133535 D 573059 CDS YP_005701749.1 387152813 12869350 1135028..1135999 1 NC_017310.1 KEGG: dma:DMR_13260 hypothetical membrane protein; hypothetical protein 1135999 12869350 Deval_0947 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701749.1 1135028 D 573059 CDS YP_005701750.1 387152814 12869351 complement(1136236..1136934) 1 NC_017310.1 TIGRFAM: cytidylate kinase; KEGG: dds:Ddes_0760 cytidylate kinase; PFAM: cytidylate kinase region; shikimate kinase; cytidylate kinase 1136934 12869351 Deval_0948 Desulfovibrio vulgaris RCH1 cytidylate kinase YP_005701750.1 1136236 R 573059 CDS YP_005701751.1 387152815 12869352 complement(1136927..1138048) 1 NC_017310.1 KEGG: dde:Dde_1453 histidinol phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase 1138048 12869352 Deval_0949 Desulfovibrio vulgaris RCH1 histidinol-phosphate aminotransferase YP_005701751.1 1136927 R 573059 CDS YP_005701752.1 387152816 12869353 complement(1138315..1138758) 1 NC_017310.1 PFAM: UspA domain-containing protein; KEGG: dds:Ddes_0762 UspA domain protein; UspA domain-containing protein 1138758 12869353 Deval_0950 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005701752.1 1138315 R 573059 CDS YP_005701753.1 387152817 12869354 1139019..1139528 1 NC_017310.1 KEGG: dde:Dde_1455 hypothetical protein; hypothetical protein 1139528 12869354 Deval_0951 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701753.1 1139019 D 573059 CDS YP_005701754.1 387152818 12869355 complement(1139961..1140455) 1 NC_017310.1 PFAM: CinA domain protein; KEGG: cvi:CV_2370 CinA-related protein; CinA domain-containing protein 1140455 12869355 Deval_0952 Desulfovibrio vulgaris RCH1 CinA domain-containing protein YP_005701754.1 1139961 R 573059 CDS YP_005701755.1 387152819 12869356 1140663..1141448 1 NC_017310.1 KEGG: dsa:Desal_2044 hypothetical protein; hypothetical protein 1141448 12869356 Deval_0953 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701755.1 1140663 D 573059 CDS YP_005701756.1 387152820 12869357 1141445..1142512 1 NC_017310.1 KEGG: dde:Dde_1461 glucokinase; PFAM: Glucokinase; glucokinase 1142512 12869357 Deval_0954 Desulfovibrio vulgaris RCH1 glucokinase YP_005701756.1 1141445 D 573059 CDS YP_005701757.1 387152821 12869358 1142509..1143393 1 NC_017310.1 PFAM: SNARE associated Golgi protein; KEGG: amc:MADE_01787 mercuric reductase (Hg(II) reductase); hypothetical protein 1143393 12869358 Deval_0955 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701757.1 1142509 D 573059 CDS YP_005701758.1 387152822 12869359 1143424..1144866 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1463 mercuric reductase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1144866 12869359 Deval_0956 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005701758.1 1143424 D 573059 CDS YP_005701759.1 387152823 12869360 complement(1144969..1145718) 1 NC_017310.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: dde:Dde_1465 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 1145718 12869360 Deval_0957 Desulfovibrio vulgaris RCH1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_005701759.1 1144969 R 573059 CDS YP_005701760.1 387152824 12869361 complement(1145715..1146356) 1 NC_017310.1 KEGG: dde:Dde_1466 putative lipoprotein; putative lipoprotein 1146356 12869361 Deval_0958 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005701760.1 1145715 R 573059 CDS YP_005701761.1 387152825 12869362 complement(1146356..1146964) 1 NC_017310.1 KEGG: dde:Dde_1467 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1146964 12869362 Deval_0959 Desulfovibrio vulgaris RCH1 imidazoleglycerol-phosphate dehydratase YP_005701761.1 1146356 R 573059 CDS YP_005701762.1 387152826 12869363 complement(1146981..1148216) 1 NC_017310.1 KEGG: dds:Ddes_1808 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 1148216 12869363 Deval_0960 Desulfovibrio vulgaris RCH1 Sec-independent protein translocase subunit TatC YP_005701762.1 1146981 R 573059 CDS YP_005701763.1 387152827 12869364 complement(1148213..1148581) 1 NC_017310.1 KEGG: dde:Dde_1469 twin-arginine translocation protein TatB; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein subunit TatB 1148581 12869364 Deval_0961 Desulfovibrio vulgaris RCH1 twin-arginine translocation protein subunit TatB YP_005701763.1 1148213 R 573059 CDS YP_005701764.1 387152828 12869365 complement(1148618..1150165) 1 NC_017310.1 KEGG: dds:Ddes_1806 GMP synthase, large subunit; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; GMP synthase large subunit 1150165 12869365 Deval_0962 Desulfovibrio vulgaris RCH1 GMP synthase large subunit YP_005701764.1 1148618 R 573059 CDS YP_005701765.1 387152829 12869366 complement(1150203..1151660) 1 NC_017310.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: dds:Ddes_1805 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 1151660 12869366 Deval_0963 Desulfovibrio vulgaris RCH1 inosine-5'-monophosphate dehydrogenase YP_005701765.1 1150203 R 573059 CDS YP_005701766.1 387152830 12869367 complement(1151920..1152516) 1 NC_017310.1 KEGG: dde:Dde_1473 TPR repeat-containing protein; hypothetical protein 1152516 12869367 Deval_0964 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701766.1 1151920 R 573059 CDS YP_005701767.1 387152831 12869368 complement(1152509..1152646) 1 NC_017310.1 KEGG: dba:Dbac_2504 hypothetical protein; hypothetical protein 1152646 12869368 Deval_0965 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701767.1 1152509 R 573059 CDS YP_005701768.1 387152832 12869369 complement(1152656..1153330) 1 NC_017310.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC; cytochrome c assembly protein 1153330 12869369 Deval_0966 Desulfovibrio vulgaris RCH1 cytochrome c assembly protein YP_005701768.1 1152656 R 573059 CDS YP_005701769.1 387152833 12869370 complement(1153382..1154059) 1 NC_017310.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dde:Dde_1475 cytochrome c-type biogenesis protein CcmB; cytochrome c-type biogenesis protein CcmB 1154059 12869370 Deval_0967 Desulfovibrio vulgaris RCH1 cytochrome c-type biogenesis protein CcmB YP_005701769.1 1153382 R 573059 CDS YP_005701770.1 387152834 12869371 complement(1154053..1154703) 1 NC_017310.1 KEGG: dde:Dde_1476 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1154703 12869371 Deval_0968 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701770.1 1154053 R 573059 CDS YP_005701771.1 387152835 12869372 complement(1154703..1156598) 1 NC_017310.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein 1156598 12869372 Deval_0969 Desulfovibrio vulgaris RCH1 cytochrome c assembly protein YP_005701771.1 1154703 R 573059 CDS YP_005701772.1 387152836 12869373 complement(1156686..1157099) 1 NC_017310.1 KEGG: dde:Dde_1478 cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE 1157099 12869373 Deval_0970 Desulfovibrio vulgaris RCH1 cytochrome c-type biogenesis protein CcmE YP_005701772.1 1156686 R 573059 CDS YP_005701773.1 387152837 12869374 complement(1157237..1158271) 1 NC_017310.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dde:Dde_1479 CBS; hypothetical protein 1158271 12869374 Deval_0971 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701773.1 1157237 R 573059 CDS YP_005701774.1 387152838 12869375 1158467..1159105 1 NC_017310.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dde:Dde_1481 HAD family hydrolase; histidinol-phosphate phosphatase family protein 1159105 12869375 Deval_0972 Desulfovibrio vulgaris RCH1 histidinol-phosphate phosphatase family protein YP_005701774.1 1158467 D 573059 CDS YP_005701775.1 387152839 12869376 1159105..1160376 1 NC_017310.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1482 heptosyltransferase family protein; glycosyl transferase family protein 1160376 12869376 Deval_0973 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005701775.1 1159105 D 573059 CDS YP_005701776.1 387152840 12869377 complement(1160871..1161692) 1 NC_017310.1 KEGG: dde:Dde_1193 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1161692 12869377 Deval_0974 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701776.1 1160871 R 573059 CDS YP_005701777.1 387152841 12869378 complement(1161689..1162459) 1 NC_017310.1 KEGG: dsa:Desal_3207 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; cobalt ABC transporter permease 1162459 12869378 Deval_0975 Desulfovibrio vulgaris RCH1 cobalt ABC transporter permease YP_005701777.1 1161689 R 573059 CDS YP_005701778.1 387152842 12869379 complement(1162462..1163076) 1 NC_017310.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dba:Dbac_3138 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis protein CbiM 1163076 12869379 Deval_0976 Desulfovibrio vulgaris RCH1 cobalamin (vitamin B12) biosynthesis protein CbiM YP_005701778.1 1162462 R 573059 CDS YP_005701779.1 387152843 12869380 complement(1163296..1164468) 1 NC_017310.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_1401 L-threonine O-3-phosphate decarboxylase; class I and II aminotransferase 1164468 12869380 Deval_0977 Desulfovibrio vulgaris RCH1 class I and II aminotransferase YP_005701779.1 1163296 R 573059 CDS YP_005701780.1 387152844 12869381 complement(1164465..1165568) 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: lip:LI0444 glycosyltransferase; group 1 glycosyl transferase 1165568 12869381 Deval_0978 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005701780.1 1164465 R 573059 CDS YP_005701781.1 387152845 12869382 complement(1165578..1166639) 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase; group 1 glycosyl transferase 1166639 12869382 Deval_0979 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005701781.1 1165578 R 573059 CDS YP_005701782.1 387152846 12869383 complement(1166765..1167535) 1 NC_017310.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dde:Dde_1404 NCAIR mutase (PurE)-related proteins-like; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase 1167535 12869383 Deval_0980 Desulfovibrio vulgaris RCH1 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_005701782.1 1166765 R 573059 CDS YP_005701783.1 387152847 12869384 1167685..1169118 1 NC_017310.1 KEGG: dde:Dde_1405 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: AAA ATPase; response regulator receiver; two component Fis family sigma54-specific transcriptional regulator 1169118 12869384 Deval_0981 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005701783.1 1167685 D 573059 CDS YP_005701784.1 387152848 12869385 1169466..1171394 1 NC_017310.1 KEGG: dde:Dde_1406 aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain-containing protein; aconitate hydratase 1171394 12869385 Deval_0982 Desulfovibrio vulgaris RCH1 aconitate hydratase YP_005701784.1 1169466 D 573059 CDS YP_005701785.1 387152849 12869386 1171422..1173311 1 NC_017310.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein; PpiC-type peptidyl-prolyl cis-trans isomerase 1173311 12869386 Deval_0983 Desulfovibrio vulgaris RCH1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_005701785.1 1171422 D 573059 CDS YP_005701786.1 387152850 12869387 1173731..1174222 1 NC_017310.1 KEGG: dsa:Desal_2452 xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; xanthine phosphoribosyltransferase 1174222 12869387 Deval_0984 Desulfovibrio vulgaris RCH1 xanthine phosphoribosyltransferase YP_005701786.1 1173731 D 573059 CDS YP_005701787.1 387152851 12869388 1174308..1175456 1 NC_017310.1 PFAM: basic membrane lipoprotein; KEGG: dde:Dde_1507 Bmp family membrane protein; basic membrane lipoprotein 1175456 12869388 Deval_0985 Desulfovibrio vulgaris RCH1 basic membrane lipoprotein YP_005701787.1 1174308 D 573059 CDS YP_005701788.1 387152852 12869389 1175482..1176546 1 NC_017310.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_1508 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 1176546 12869389 Deval_0986 Desulfovibrio vulgaris RCH1 inner-membrane translocator YP_005701788.1 1175482 D 573059 CDS YP_005701789.1 387152853 12869390 1176543..1177463 1 NC_017310.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_1509 branched chain amino acid ABC transporter, permease protein; inner-membrane translocator 1177463 12869390 Deval_0987 Desulfovibrio vulgaris RCH1 inner-membrane translocator YP_005701789.1 1176543 D 573059 CDS YP_005701790.1 387152854 12869391 1177468..1179042 1 NC_017310.1 KEGG: dde:Dde_1510 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1179042 12869391 Deval_0988 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701790.1 1177468 D 573059 CDS YP_005701791.1 387152855 12869392 complement(1179471..1180061) 1 NC_017310.1 KEGG: dde:Dde_2401 hypothetical protein; hypothetical protein 1180061 12869392 Deval_0989 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701791.1 1179471 R 573059 CDS YP_005701792.1 387152856 12869393 complement(1180123..1180785) 1 NC_017310.1 KEGG: dma:DMR_22260 hypothetical protein; hypothetical protein 1180785 12869393 Deval_0990 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701792.1 1180123 R 573059 CDS YP_005701793.1 387152857 12869394 1180981..1181907 1 NC_017310.1 KEGG: dde:Dde_2398 hypothetical protein; hypothetical protein 1181907 12869394 Deval_0991 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701793.1 1180981 D 573059 CDS YP_005701794.1 387152858 12869395 1182111..1182245 1 NC_017310.1 KEGG: dds:Ddes_1970 ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; 50S ribosomal protein L34 1182245 12869395 Deval_0992 Desulfovibrio vulgaris RCH1 50S ribosomal protein L34 YP_005701794.1 1182111 D 573059 CDS YP_005701795.1 387152859 12869396 1182233..1182622 1 NC_017310.1 manually curated; TIGRFAM: ribonuclease P protein component; KEGG: dde:Dde_2396 ribonuclease P protein component; PFAM: ribonuclease P protein; ribonuclease P protein component 1182622 12869396 Deval_0993 Desulfovibrio vulgaris RCH1 ribonuclease P protein component YP_005701795.1 1182233 D 573059 CDS YP_005701796.1 387152860 12869397 1182619..1182879 1 NC_017310.1 PFAM: protein of unknown function DUF37; KEGG: dds:Ddes_1968 protein of unknown function DUF37; hypothetical protein 1182879 12869397 Deval_0994 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701796.1 1182619 D 573059 CDS YP_005701797.1 387152861 12869398 1182887..1184491 1 NC_017310.1 KEGG: dde:Dde_2394 protein translocase subunit YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60 kDa inner membrane insertion protein; YidC/Oxa1 family membrane protein insertase 1184491 12869398 Deval_0995 Desulfovibrio vulgaris RCH1 YidC/Oxa1 family membrane protein insertase YP_005701797.1 1182887 D 573059 CDS YP_005701798.1 387152862 12869399 1184530..1185822 1 NC_017310.1 KEGG: dde:Dde_2393 single-stranded nucleic acid binding R3H; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein; single-stranded nucleic acid binding R3H domain-containing protein 1185822 12869399 Deval_0996 Desulfovibrio vulgaris RCH1 single-stranded nucleic acid binding R3H domain-containing protein YP_005701798.1 1184530 D 573059 CDS YP_005701799.1 387152863 12869400 1185896..1187269 1 NC_017310.1 KEGG: dde:Dde_2392 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; tRNA modification GTPase TrmE 1187269 12869400 Deval_0997 Desulfovibrio vulgaris RCH1 tRNA modification GTPase TrmE YP_005701799.1 1185896 D 573059 CDS YP_005701800.1 387152864 12869401 1187444..1188130 1 NC_017310.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like; nitrite and sulfite reductase 4Fe-4S region 1188130 12869401 Deval_0998 Desulfovibrio vulgaris RCH1 nitrite and sulfite reductase 4Fe-4S region YP_005701800.1 1187444 D 573059 CDS YP_005701801.1 387152865 12869402 1188127..1189746 1 NC_017310.1 KEGG: dde:Dde_2389 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 1189746 12869402 Deval_0999 Desulfovibrio vulgaris RCH1 iron-sulfur cluster-binding protein YP_005701801.1 1188127 D 573059 CDS YP_005701802.1 387152866 12869403 1189866..1190471 1 NC_017310.1 KEGG: dde:Dde_2388 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; 3'-5' exonuclease 1190471 12869403 Deval_1000 Desulfovibrio vulgaris RCH1 3'-5' exonuclease YP_005701802.1 1189866 D 573059 CDS YP_005701803.1 387152867 12869404 1190645..1191334 1 NC_017310.1 KEGG: dde:Dde_2387 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator 1191334 12869404 Deval_1001 Desulfovibrio vulgaris RCH1 winged helix family two component transcriptional regulator YP_005701803.1 1190645 D 573059 CDS YP_005701804.1 387152868 12869405 1191362..1192129 1 NC_017310.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dde:Dde_2386 phosphate transporter ATP-binding protein; SMART: AAA ATPase; phosphate ABC transporter ATPase 1192129 12869405 Deval_1002 Desulfovibrio vulgaris RCH1 phosphate ABC transporter ATPase YP_005701804.1 1191362 D 573059 CDS YP_005701805.1 387152869 12869406 1192138..1192803 1 NC_017310.1 KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 1192803 12869406 Deval_1003 Desulfovibrio vulgaris RCH1 phosphate uptake regulator PhoU YP_005701805.1 1192138 D 573059 CDS YP_005701806.1 387152870 12869407 1193147..1193710 1 NC_017310.1 KEGG: dsa:Desal_3085 hypothetical protein; hypothetical protein 1193710 12869407 Deval_1004 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701806.1 1193147 D 573059 CDS YP_005701807.1 387152871 12869408 1193714..1194916 1 NC_017310.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: dds:Ddes_1963 protein of unknown function UPF0052 and CofD; hypothetical protein 1194916 12869408 Deval_1005 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701807.1 1193714 D 573059 CDS YP_005701808.1 387152872 12869409 complement(1195296..1197935) 1 NC_017310.1 KEGG: dde:Dde_2374 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; alanyl-tRNA synthetase 1197935 12869409 Deval_1006 Desulfovibrio vulgaris RCH1 alanyl-tRNA synthetase YP_005701808.1 1195296 R 573059 CDS YP_005701809.1 387152873 12869410 complement(1198014..1199087) 1 NC_017310.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: dde:Dde_2373 recombinase A; SMART: AAA ATPase; recA protein 1199087 12869410 Deval_1007 Desulfovibrio vulgaris RCH1 recA protein YP_005701809.1 1198014 R 573059 CDS YP_005701810.1 387152874 12869411 1199376..1200482 1 NC_017310.1 PFAM: Thiamine biosynthesis protein-like; protein of unknown function DUF814; KEGG: dde:Dde_2372 hypothetical protein; Thiamine biosynthesis protein-like protein 1200482 12869411 Deval_1008 Desulfovibrio vulgaris RCH1 Thiamine biosynthesis protein-like protein YP_005701810.1 1199376 D 573059 CDS YP_005701811.1 387152875 12869412 1200700..1202061 1 NC_017310.1 PFAM: sodium:neurotransmitter symporter; KEGG: dde:Dde_2371 sodium-dependent symporter family protein; sodium:neurotransmitter symporter 1202061 12869412 Deval_1009 Desulfovibrio vulgaris RCH1 sodium:neurotransmitter symporter YP_005701811.1 1200700 D 573059 CDS YP_005701812.1 387152876 12869413 complement(1202251..1202781) 1 NC_017310.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_2471 HAD family hydrolase; haloacid dehalogenase domain-containing protein hydrolase 1202781 12869413 Deval_1010 Desulfovibrio vulgaris RCH1 haloacid dehalogenase domain-containing protein hydrolase YP_005701812.1 1202251 R 573059 CDS YP_005701813.1 387152877 12869414 complement(1202914..1204296) 1 NC_017310.1 KEGG: dde:Dde_2530 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; argininosuccinate lyase 1204296 12869414 Deval_1011 Desulfovibrio vulgaris RCH1 argininosuccinate lyase YP_005701813.1 1202914 R 573059 CDS YP_005701814.1 387152878 12869415 complement(1204300..1205490) 1 NC_017310.1 TIGRFAM: argininosuccinate synthase; KEGG: dde:Dde_2531 argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 1205490 12869415 Deval_1012 Desulfovibrio vulgaris RCH1 argininosuccinate synthase YP_005701814.1 1204300 R 573059 CDS YP_005701815.1 387152879 12869416 complement(1205542..1206444) 1 NC_017310.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: dde:Dde_2532 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; ornithine carbamoyltransferase 1206444 12869416 Deval_1013 Desulfovibrio vulgaris RCH1 ornithine carbamoyltransferase YP_005701815.1 1205542 R 573059 CDS YP_005701816.1 387152880 12869417 1206592..1207335 1 NC_017310.1 PFAM: ApbE family lipoprotein; KEGG: dde:Dde_2535 hypothetical protein; ApbE family lipoprotein 1207335 12869417 Deval_1014 Desulfovibrio vulgaris RCH1 ApbE family lipoprotein YP_005701816.1 1206592 D 573059 CDS YP_005701817.1 387152881 12869419 complement(1207755..1208498) 1 NC_017310.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dma:DMR_29400 hypothetical protein; DNA methylase N-4/N-6 domain-containing protein 1208498 12869419 Deval_1015 Desulfovibrio vulgaris RCH1 DNA methylase N-4/N-6 domain-containing protein YP_005701817.1 1207755 R 573059 CDS YP_005701818.1 387152882 12869420 complement(1208476..1208670) 1 NC_017310.1 manually curated; KEGG: bcm:Bcenmc03_0187 hypothetical protein; hypothetical protein 1208670 12869420 Deval_1016 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701818.1 1208476 R 573059 CDS YP_005701819.1 387152883 12869421 complement(1208928..1209374) 1 NC_017310.1 KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 1209374 12869421 Deval_1017 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701819.1 1208928 R 573059 CDS YP_005701820.1 387152884 12869422 complement(1209388..1210905) 1 NC_017310.1 KEGG: dde:Dde_3393 tail fiber protein, putative; tail fiber protein, putative 1210905 12869422 Deval_1018 Desulfovibrio vulgaris RCH1 tail fiber protein, putative YP_005701820.1 1209388 R 573059 CDS YP_005701821.1 387152885 12869423 complement(1210907..1211563) 1 NC_017310.1 KEGG: dde:Dde_3392 hypothetical protein; hypothetical protein 1211563 12869423 Deval_1019 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701821.1 1210907 R 573059 CDS YP_005701822.1 387152886 12869424 complement(1211564..1211716) 1 NC_017310.1 KEGG: isc:IscW_ISCW004690 hypothetical protein; hypothetical protein 1211716 12869424 Deval_1020 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701822.1 1211564 R 573059 CDS YP_005701823.1 387152887 12869425 complement(1211718..1212899) 1 NC_017310.1 PFAM: Baseplate J family protein; KEGG: dde:Dde_3391 baseplate assembly protein, putative; baseplate J family protein 1212899 12869425 Deval_1021 Desulfovibrio vulgaris RCH1 baseplate J family protein YP_005701823.1 1211718 R 573059 CDS YP_005701824.1 387152888 12869426 complement(1212877..1213311) 1 NC_017310.1 KEGG: gem:GM21_3653 baseplate assembly protein, putative; baseplate assembly protein, putative 1213311 12869426 Deval_1022 Desulfovibrio vulgaris RCH1 baseplate assembly protein, putative YP_005701824.1 1212877 R 573059 CDS YP_005701825.1 387152889 12869427 complement(1213308..1214039) 1 NC_017310.1 KEGG: dde:Dde_3389 baseplate assembly protein, putative; baseplate assembly protein, putative 1214039 12869427 Deval_1023 Desulfovibrio vulgaris RCH1 baseplate assembly protein, putative YP_005701825.1 1213308 R 573059 CDS YP_005701826.1 387152890 12869428 complement(1214026..1214826) 1 NC_017310.1 KEGG: dde:Dde_3388 hypothetical protein; hypothetical protein 1214826 12869428 Deval_1024 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701826.1 1214026 R 573059 CDS YP_005701827.1 387152891 12869429 complement(1214972..1215523) 1 NC_017310.1 KEGG: dde:Dde_3387 hypothetical protein; hypothetical protein 1215523 12869429 Deval_1025 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701827.1 1214972 R 573059 CDS YP_005701828.1 387152892 12869430 complement(1215520..1217862) 1 NC_017310.1 KEGG: rce:RC1_1127 phage tail tape measure protein, TP901 family, core region; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, TP901 family 1217862 12869430 Deval_1026 Desulfovibrio vulgaris RCH1 phage tail tape measure protein, TP901 family YP_005701828.1 1215520 R 573059 CDS YP_005701829.1 387152893 12869431 complement(1218063..1218395) 1 NC_017310.1 KEGG: zro:ZYRO0B03740g hypothetical protein; hypothetical protein 1218395 12869431 Deval_1027 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701829.1 1218063 R 573059 CDS YP_005701830.1 387152894 12869432 1218628..1219650 1 NC_017310.1 KEGG: rpi:Rpic_0439 ATPase; ATPase 1219650 12869432 Deval_1028 Desulfovibrio vulgaris RCH1 ATPase YP_005701830.1 1218628 D 573059 CDS YP_005701831.1 387152895 12869433 complement(1219710..1220156) 1 NC_017310.1 KEGG: gem:GM21_3661 hypothetical protein; hypothetical protein 1220156 12869433 Deval_1029 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701831.1 1219710 R 573059 CDS YP_005701832.1 387152896 12869434 complement(1220169..1221854) 1 NC_017310.1 KEGG: gem:GM21_3662 hypothetical protein; hypothetical protein 1221854 12869434 Deval_1030 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701832.1 1220169 R 573059 CDS YP_005701833.1 387152897 12869435 complement(1221864..1222244) 1 NC_017310.1 KEGG: gem:GM21_3663 hypothetical protein; hypothetical protein 1222244 12869435 Deval_1031 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701833.1 1221864 R 573059 CDS YP_005701834.1 387152898 12869436 complement(1222246..1222782) 1 NC_017310.1 KEGG: dde:Dde_3380 hypothetical protein; hypothetical protein 1222782 12869436 Deval_1032 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701834.1 1222246 R 573059 CDS YP_005701835.1 387152899 12869437 complement(1222797..1223237) 1 NC_017310.1 TIGRFAM: phage virion morphogenesis protein; KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein; phage virion morphogenesis protein 1223237 12869437 Deval_1033 Desulfovibrio vulgaris RCH1 phage virion morphogenesis protein YP_005701835.1 1222797 R 573059 CDS YP_005701836.1 387152900 12869438 complement(1223237..1223668) 1 NC_017310.1 PFAM: protein of unknown function DUF1320; KEGG: dde:Dde_3378 hypothetical protein; hypothetical protein 1223668 12869438 Deval_1034 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701836.1 1223237 R 573059 CDS YP_005701837.1 387152901 12869439 complement(1223949..1224944) 1 NC_017310.1 KEGG: dap:Dacet_2234 hypothetical protein; hypothetical protein 1224944 12869439 Deval_1035 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701837.1 1223949 R 573059 CDS YP_005701838.1 387152902 12869440 complement(1224953..1225300) 1 NC_017310.1 KEGG: dap:Dacet_2233 hypothetical protein; hypothetical protein 1225300 12869440 Deval_1036 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701838.1 1224953 R 573059 CDS YP_005701839.1 387152903 12869441 complement(1225316..1226266) 1 NC_017310.1 KEGG: dde:Dde_3375 hypothetical protein; hypothetical protein 1226266 12869441 Deval_1037 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701839.1 1225316 R 573059 CDS YP_005701840.1 387152904 12869442 complement(1226456..1227757) 1 NC_017310.1 KEGG: dde:Dde_3374 phage putative head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; phage head morphogenesis protein 1227757 12869442 Deval_1038 Desulfovibrio vulgaris RCH1 phage head morphogenesis protein YP_005701840.1 1226456 R 573059 CDS YP_005701841.1 387152905 12869443 complement(1227757..1229349) 1 NC_017310.1 PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein; hypothetical protein 1229349 12869443 Deval_1039 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701841.1 1227757 R 573059 CDS YP_005701842.1 387152906 12869444 complement(1229434..1230054) 1 NC_017310.1 KEGG: hypothetical protein; hypothetical protein 1230054 12869444 Deval_1040 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701842.1 1229434 R 573059 CDS YP_005701843.1 387152907 12869445 complement(1230114..1231598) 1 NC_017310.1 KEGG: dde:Dde_3372 portal protein, putative; portal protein, putative 1231598 12869445 Deval_1041 Desulfovibrio vulgaris RCH1 portal protein, putative YP_005701843.1 1230114 R 573059 CDS YP_005701844.1 387152908 12869446 complement(1231649..1232245) 1 NC_017310.1 KEGG: dde:Dde_3371 hypothetical protein; hypothetical protein 1232245 12869446 Deval_1042 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701844.1 1231649 R 573059 CDS YP_005701845.1 387152909 12869447 complement(1232257..1232499) 1 NC_017310.1 KEGG: sma:SAV_3771 hypothetical protein; hypothetical protein 1232499 12869447 Deval_1043 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701845.1 1232257 R 573059 CDS YP_005701846.1 387152910 12869448 complement(1232496..1232969) 1 NC_017310.1 KEGG: gem:GM21_3675 hypothetical protein; hypothetical protein 1232969 12869448 Deval_1044 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701846.1 1232496 R 573059 CDS YP_005701847.1 387152911 12869449 complement(1232966..1233271) 1 NC_017310.1 KEGG: spo:SPCC895.05 formin For3; hypothetical protein 1233271 12869449 Deval_1045 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701847.1 1232966 R 573059 CDS YP_005701848.1 387152912 12869450 complement(1233225..1233638) 1 NC_017310.1 KEGG: met:M446_6666 peptidase C14 caspase catalytic subunit P20; hypothetical protein 1233638 12869450 Deval_1046 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701848.1 1233225 R 573059 CDS YP_005701849.1 387152913 12869451 complement(1233631..1234296) 1 NC_017310.1 PFAM: Lytic transglycosylase catalytic; KEGG: lip:LIC036 putative lytic murein transglycosylase precursor; lytic transglycosylase 1234296 12869451 Deval_1047 Desulfovibrio vulgaris RCH1 lytic transglycosylase YP_005701849.1 1233631 R 573059 CDS YP_005701850.1 387152914 12869452 complement(1234296..1234664) 1 NC_017310.1 KEGG: bbr:BB3639 phage-related membrane protein; phage-related membrane protein 1234664 12869452 Deval_1048 Desulfovibrio vulgaris RCH1 phage-related membrane protein YP_005701850.1 1234296 R 573059 CDS YP_005701851.1 387152915 12869453 complement(1234738..1235202) 1 NC_017310.1 KEGG: dde:Dde_3360 DNA-binding protein; DNA-binding protein 1235202 12869453 Deval_1049 Desulfovibrio vulgaris RCH1 DNA-binding protein YP_005701851.1 1234738 R 573059 CDS YP_005701852.1 387152916 12869454 complement(1235186..1235551) 1 NC_017310.1 KEGG: dde:Dde_3359 hypothetical protein; hypothetical protein 1235551 12869454 Deval_1050 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701852.1 1235186 R 573059 CDS YP_005701853.1 387152917 12869455 complement(1235548..1236024) 1 NC_017310.1 KEGG: dde:Dde_3358 hypothetical protein; hypothetical protein 1236024 12869455 Deval_1051 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701853.1 1235548 R 573059 CDS YP_005701854.1 387152918 12869456 complement(1236021..1236479) 1 NC_017310.1 KEGG: dde:Dde_3357 hypothetical protein; hypothetical protein 1236479 12869456 Deval_1052 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701854.1 1236021 R 573059 CDS YP_005701855.1 387152919 12869457 complement(1236561..1236848) 1 NC_017310.1 KEGG: eli:ELI_12475 integration host factor beta-subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1236848 12869457 Deval_1053 Desulfovibrio vulgaris RCH1 histone family protein DNA-binding protein YP_005701855.1 1236561 R 573059 CDS YP_005701856.1 387152920 12869458 complement(1236862..1237101) 1 NC_017310.1 KEGG: tcu:Tcur_3108 NAD+ synthetase; hypothetical protein 1237101 12869458 Deval_1054 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701856.1 1236862 R 573059 CDS YP_005701857.1 387152921 12869459 complement(1237119..1237631) 1 NC_017310.1 KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative; host-nuclease inhibitor protein Gam 1237631 12869459 Deval_1055 Desulfovibrio vulgaris RCH1 host-nuclease inhibitor protein Gam YP_005701857.1 1237119 R 573059 CDS YP_005701858.1 387152922 12869460 complement(1237633..1237821) 1 NC_017310.1 hypothetical protein 1237821 12869460 Deval_1056 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701858.1 1237633 R 573059 CDS YP_005701859.1 387152923 12869461 complement(1237824..1238456) 1 NC_017310.1 KEGG: dma:DMR_14510 hypothetical protein; hypothetical protein 1238456 12869461 Deval_1057 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701859.1 1237824 R 573059 CDS YP_005701860.1 387152924 12869462 complement(1238449..1239186) 1 NC_017310.1 SMART: AAA ATPase; KEGG: dma:DMR_14500 hypothetical protein; AAA ATPase 1239186 12869462 Deval_1058 Desulfovibrio vulgaris RCH1 AAA ATPase YP_005701860.1 1238449 R 573059 CDS YP_005701861.1 387152925 12869463 complement(1239183..1241336) 1 NC_017310.1 PFAM: Transposase-like Mu ; Integrase catalytic region; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative; transposase-like Mu 1241336 12869463 Deval_1059 Desulfovibrio vulgaris RCH1 transposase-like Mu YP_005701861.1 1239183 R 573059 CDS YP_005701862.1 387152926 12869464 complement(1241560..1242048) 1 NC_017310.1 KEGG: mmi:MMAR_2197 secreted protein; hypothetical protein 1242048 12869464 Deval_1060 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701862.1 1241560 R 573059 CDS YP_005701863.1 387152927 12869465 complement(1242048..1242317) 1 NC_017310.1 KEGG: dde:Dde_3348 hypothetical protein; hypothetical protein 1242317 12869465 Deval_1061 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701863.1 1242048 R 573059 CDS YP_005701864.1 387152928 12869466 complement(1242314..1242739) 1 NC_017310.1 KEGG: dde:Dde_3347 hypothetical protein; hypothetical protein 1242739 12869466 Deval_1062 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701864.1 1242314 R 573059 CDS YP_005701865.1 387152929 12869467 1243001..1243768 1 NC_017310.1 PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dds:Ddes_0819 putative phage repressor; putative phage repressor 1243768 12869467 Deval_1063 Desulfovibrio vulgaris RCH1 putative phage repressor YP_005701865.1 1243001 D 573059 CDS YP_005701866.1 387152930 12867525 1245354..1246733 1 NC_017310.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: dat:HRM2_29880 AlgI2; membrane bound O-acyl transferase MBOAT family protein 1246733 12867525 Deval_1065 Desulfovibrio vulgaris RCH1 membrane bound O-acyl transferase MBOAT family protein YP_005701866.1 1245354 D 573059 CDS YP_005701867.1 387152931 12867526 1246759..1247781 1 NC_017310.1 KEGG: sli:Slin_5462 hypothetical protein; hypothetical protein 1247781 12867526 Deval_1066 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701867.1 1246759 D 573059 CDS YP_005701868.1 387152932 12867528 1248708..1249121 1 NC_017310.1 manually curated; KEGG: ypn:YPN_0261 hypothetical protein; hypothetical protein 1249121 12867528 Deval_1068 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701868.1 1248708 D 573059 CDS YP_005701869.1 387152933 12867529 1249395..1250222 1 NC_017310.1 PFAM: protein of unknown function DUF1555; KEGG: ppd:Ppro_2434 hypothetical protein; hypothetical protein 1250222 12867529 Deval_1069 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701869.1 1249395 D 573059 CDS YP_005701870.1 387152934 12867530 complement(1250888..1252327) 1 NC_017310.1 KEGG: two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 1252327 12867530 Deval_1070 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005701870.1 1250888 R 573059 CDS YP_005701871.1 387152935 12867531 complement(1252324..1255581) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; KEGG: rpa:RPA1249 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; multi-sensor signal transduction histidine kinase 1255581 12867531 Deval_1071 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005701871.1 1252324 R 573059 CDS YP_005701872.1 387152936 12867533 complement(1256656..1257669) 1 NC_017310.1 PFAM: Urea transporter; KEGG: har:HEAR1518 putative UreA transporter; Urea transporter 1257669 12867533 Deval_1073 Desulfovibrio vulgaris RCH1 Urea transporter YP_005701872.1 1256656 R 573059 CDS YP_005701873.1 387152937 12867534 complement(1257706..1257936) 1 NC_017310.1 KEGG: dat:HRM2_02720 hypothetical protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; FmdB family regulatory protein 1257936 12867534 Deval_1074 Desulfovibrio vulgaris RCH1 FmdB family regulatory protein YP_005701873.1 1257706 R 573059 CDS YP_005701874.1 387152938 12867535 complement(1257923..1258114) 1 NC_017310.1 hypothetical protein 1258114 12867535 Deval_1075 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701874.1 1257923 R 573059 CDS YP_005701875.1 387152939 12867536 complement(1258257..1259531) 1 NC_017310.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpf:BpOF4_00490 hypothetical protein; major facilitator superfamily protein 1259531 12867536 Deval_1076 Desulfovibrio vulgaris RCH1 major facilitator superfamily protein YP_005701875.1 1258257 R 573059 CDS YP_005701876.1 387152940 12867537 complement(1259651..1260655) 1 NC_017310.1 KEGG: hpa:HPAG1_1180 formamidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Formamidase 1260655 12867537 Deval_1077 Desulfovibrio vulgaris RCH1 Formamidase YP_005701876.1 1259651 R 573059 CDS YP_005701877.1 387152941 12867538 1261327..1262646 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0642 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1262646 12867538 Deval_1078 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005701877.1 1261327 D 573059 CDS YP_005701878.1 387152942 12867539 complement(1263751..1264041) 1 NC_017310.1 KEGG: vvi:100255033 hypothetical protein LOC100255033; hypothetical protein 1264041 12867539 Deval_1079 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701878.1 1263751 R 573059 CDS YP_005701879.1 387152943 12867540 complement(1264038..1264379) 1 NC_017310.1 KEGG: stp:Strop_0250 hypothetical protein; hypothetical protein 1264379 12867540 Deval_1080 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701879.1 1264038 R 573059 CDS YP_005701880.1 387152944 12867541 complement(1264552..1266966) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold domain protein; KEGG: dsa:Desal_1013 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 1266966 12867541 Deval_1081 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005701880.1 1264552 R 573059 CDS YP_005701881.1 387152945 12867542 complement(1267278..1267544) 1 NC_017310.1 KEGG: dde:Dde_2470 hypothetical protein; hypothetical protein 1267544 12867542 Deval_1082 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701881.1 1267278 R 573059 CDS YP_005701882.1 387152946 12867543 1268045..1269628 1 NC_017310.1 KEGG: dde:Dde_2468 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein MviN 1269628 12867543 Deval_1083 Desulfovibrio vulgaris RCH1 integral membrane protein MviN YP_005701882.1 1268045 D 573059 CDS YP_005701883.1 387152947 12867544 complement(1269963..1270340) 1 NC_017310.1 KEGG: dds:Ddes_1272 hypothetical protein; hypothetical protein 1270340 12867544 Deval_1084 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701883.1 1269963 R 573059 CDS YP_005701884.1 387152948 12867545 complement(1270377..1270814) 1 NC_017310.1 manually curated; KEGG: dde:Dde_2463 hypothetical protein; hypothetical protein 1270814 12867545 Deval_1085 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701884.1 1270377 R 573059 CDS YP_005701885.1 387152949 12867546 1270996..1271553 1 NC_017310.1 KEGG: dde:Dde_2462 hypothetical protein; hypothetical protein 1271553 12867546 Deval_1086 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701885.1 1270996 D 573059 CDS YP_005701886.1 387152950 12867547 complement(1271877..1272494) 1 NC_017310.1 KEGG: dde:Dde_2461 hypothetical protein; hypothetical protein 1272494 12867547 Deval_1087 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701886.1 1271877 R 573059 CDS YP_005701887.1 387152951 12867548 1272694..1274424 1 NC_017310.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2460 aldehyde:ferredoxin oxidoreductase, tungsten-containing; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 1274424 12867548 Deval_1088 Desulfovibrio vulgaris RCH1 Aldehyde ferredoxin oxidoreductase YP_005701887.1 1272694 D 573059 CDS YP_005701888.1 387152952 12867549 complement(1274651..1274875) 1 NC_017310.1 PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein; sulfur carrier protein ThiS 1274875 12867549 Deval_1089 Desulfovibrio vulgaris RCH1 sulfur carrier protein ThiS YP_005701888.1 1274651 R 573059 CDS YP_005701889.1 387152953 12867550 complement(1274889..1275974) 1 NC_017310.1 TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2457 metal dependent phosphohydrolase; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; response regulator receiver modulated metal dependent phosphohydrolase 1275974 12867550 Deval_1090 Desulfovibrio vulgaris RCH1 response regulator receiver modulated metal dependent phosphohydrolase YP_005701889.1 1274889 R 573059 CDS YP_005701890.1 387152954 12867551 complement(1276008..1276907) 1 NC_017310.1 SMART: PAS domain containing protein; KEGG: dde:Dde_2456 putative PAS/PAC sensor protein; PAS domain containing protein 1276907 12867551 Deval_1091 Desulfovibrio vulgaris RCH1 PAS domain containing protein YP_005701890.1 1276008 R 573059 CDS YP_005701891.1 387152955 12867552 complement(1276904..1278151) 1 NC_017310.1 KEGG: dde:Dde_2455 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1278151 12867552 Deval_1092 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005701891.1 1276904 R 573059 CDS YP_005701892.1 387152956 12867553 1278322..1278801 1 NC_017310.1 PFAM: Colicin V production protein; KEGG: dde:Dde_2454 colicin V production family protein; colicin V production protein 1278801 12867553 Deval_1093 Desulfovibrio vulgaris RCH1 colicin V production protein YP_005701892.1 1278322 D 573059 CDS YP_005701893.1 387152957 12867554 1278829..1279632 1 NC_017310.1 KEGG: dde:Dde_2453 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; MazG family protein 1279632 12867554 Deval_1094 Desulfovibrio vulgaris RCH1 MazG family protein YP_005701893.1 1278829 D 573059 CDS YP_005701894.1 387152958 12867555 1279593..1280573 1 NC_017310.1 KEGG: dde:Dde_2452 hypothetical protein; hypothetical protein 1280573 12867555 Deval_1095 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701894.1 1279593 D 573059 CDS YP_005701895.1 387152959 12867556 1280660..1280842 1 NC_017310.1 KEGG: dde:Dde_2449 hypothetical protein; hypothetical protein 1280842 12867556 Deval_1096 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701895.1 1280660 D 573059 CDS YP_005701896.1 387152960 12867557 1280869..1282038 1 NC_017310.1 PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein; hypothetical protein 1282038 12867557 Deval_1097 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701896.1 1280869 D 573059 CDS YP_005701897.1 387152961 12867558 1282268..1285048 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; GAF domain protein; KEGG: dde:Dde_2447 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; GAF domain protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1285048 12867558 Deval_1098 Desulfovibrio vulgaris RCH1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_005701897.1 1282268 D 573059 CDS YP_005701898.1 387152962 12867559 complement(1285437..1288007) 1 NC_017310.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: dde:Dde_2444 Lon-A peptidase; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATP-dependent protease La 1288007 12867559 Deval_1099 Desulfovibrio vulgaris RCH1 ATP-dependent protease La YP_005701898.1 1285437 R 573059 CDS YP_005701899.1 387152963 12867560 complement(1288004..1288306) 1 NC_017310.1 PFAM: acylphosphatase; KEGG: srm:SRM_02285 acylphosphatase; acylphosphatase 1288306 12867560 Deval_1100 Desulfovibrio vulgaris RCH1 acylphosphatase YP_005701899.1 1288004 R 573059 CDS YP_005701900.1 387152964 12867561 complement(1288315..1288992) 1 NC_017310.1 KEGG: dde:Dde_2442 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein RadC 1288992 12867561 Deval_1101 Desulfovibrio vulgaris RCH1 DNA repair protein RadC YP_005701900.1 1288315 R 573059 CDS YP_005701901.1 387152965 12867562 complement(1289028..1290017) 1 NC_017310.1 PFAM: DNA polymerase III delta; KEGG: dde:Dde_2441 hypothetical protein; DNA polymerase III subunit delta 1290017 12867562 Deval_1102 Desulfovibrio vulgaris RCH1 DNA polymerase III subunit delta YP_005701901.1 1289028 R 573059 CDS YP_005701902.1 387152966 12867563 complement(1290100..1290618) 1 NC_017310.1 KEGG: lip:LI0151 hypothetical protein; hypothetical protein 1290618 12867563 Deval_1103 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701902.1 1290100 R 573059 CDS YP_005701903.1 387152967 12867564 complement(1290602..1293091) 1 NC_017310.1 KEGG: dde:Dde_2439 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; leucyl-tRNA synthetase 1293091 12867564 Deval_1104 Desulfovibrio vulgaris RCH1 leucyl-tRNA synthetase YP_005701903.1 1290602 R 573059 CDS YP_005701904.1 387152968 12867565 complement(1293134..1293595) 1 NC_017310.1 KEGG: dde:Dde_2438 transcription antitermination factor NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor 1293595 12867565 Deval_1105 Desulfovibrio vulgaris RCH1 NusB antitermination factor YP_005701904.1 1293134 R 573059 CDS YP_005701905.1 387152969 12867566 complement(1293599..1294069) 1 NC_017310.1 KEGG: dde:Dde_2437 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 1294069 12867566 Deval_1106 Desulfovibrio vulgaris RCH1 6,7-dimethyl-8-ribityllumazine synthase YP_005701905.1 1293599 R 573059 CDS YP_005701906.1 387152970 12867567 complement(1294201..1295430) 1 NC_017310.1 KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; GTP cyclohydrolase II 1295430 12867567 Deval_1107 Desulfovibrio vulgaris RCH1 GTP cyclohydrolase II YP_005701906.1 1294201 R 573059 CDS YP_005701907.1 387152971 12867568 complement(1295462..1296124) 1 NC_017310.1 TIGRFAM: riboflavin synthase, alpha subunit; KEGG: dde:Dde_2435 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 1296124 12867568 Deval_1108 Desulfovibrio vulgaris RCH1 riboflavin synthase subunit alpha YP_005701907.1 1295462 R 573059 CDS YP_005701908.1 387152972 12867569 complement(1296130..1297263) 1 NC_017310.1 KEGG: dde:Dde_2434 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD 1297263 12867569 Deval_1109 Desulfovibrio vulgaris RCH1 riboflavin biosynthesis protein RibD YP_005701908.1 1296130 R 573059 CDS YP_005701909.1 387152973 12867570 complement(1297266..1297796) 1 NC_017310.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_2433 cytidine/deoxycytidylate deaminase family protein; CMP/dCMP deaminase zinc-binding protein 1297796 12867570 Deval_1110 Desulfovibrio vulgaris RCH1 CMP/dCMP deaminase zinc-binding protein YP_005701909.1 1297266 R 573059 CDS YP_005701910.1 387152974 12867571 complement(1297862..1299100) 1 NC_017310.1 KEGG: dde:Dde_2432 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; glycine hydroxymethyltransferase 1299100 12867571 Deval_1111 Desulfovibrio vulgaris RCH1 glycine hydroxymethyltransferase YP_005701910.1 1297862 R 573059 CDS YP_005701911.1 387152975 12867572 complement(1299159..1300406) 1 NC_017310.1 KEGG: dde:Dde_2431 3-oxoacyl-[acyl-carrier-protein] synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 1300406 12867572 Deval_1112 Desulfovibrio vulgaris RCH1 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_005701911.1 1299159 R 573059 CDS YP_005701912.1 387152976 12867573 complement(1300594..1300824) 1 NC_017310.1 KEGG: dde:Dde_2430 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; acyl carrier protein 1300824 12867573 Deval_1113 Desulfovibrio vulgaris RCH1 acyl carrier protein YP_005701912.1 1300594 R 573059 CDS YP_005701913.1 387152977 12867574 complement(1300881..1301660) 1 NC_017310.1 KEGG: dde:Dde_2429 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase 1301660 12867574 Deval_1114 Desulfovibrio vulgaris RCH1 3-oxoacyl-(acyl-carrier-protein) reductase YP_005701913.1 1300881 R 573059 CDS YP_005701914.1 387152978 12867575 complement(1301709..1302701) 1 NC_017310.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: dde:Dde_2428 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 1302701 12867575 Deval_1115 Desulfovibrio vulgaris RCH1 3-oxoacyl-(acyl-carrier-protein) synthase III YP_005701914.1 1301709 R 573059 CDS YP_005701915.1 387152979 12867576 complement(1302758..1303795) 1 NC_017310.1 KEGG: dde:Dde_2427 putative glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; fatty acid/phospholipid synthesis protein PlsX 1303795 12867576 Deval_1116 Desulfovibrio vulgaris RCH1 fatty acid/phospholipid synthesis protein PlsX YP_005701915.1 1302758 R 573059 CDS YP_005701916.1 387152980 12867577 complement(1303788..1303967) 1 NC_017310.1 KEGG: dds:Ddes_1611 ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; 50S ribosomal protein L32 1303967 12867577 Deval_1117 Desulfovibrio vulgaris RCH1 50S ribosomal protein L32 YP_005701916.1 1303788 R 573059 CDS YP_005701917.1 387152981 12867578 complement(1304012..1304548) 1 NC_017310.1 PFAM: protein of unknown function DUF177; KEGG: dde:Dde_2426 hypothetical protein; hypothetical protein 1304548 12867578 Deval_1118 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701917.1 1304012 R 573059 CDS YP_005701918.1 387152982 12867579 1304751..1304960 1 NC_017310.1 KEGG: dde:Dde_2425 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; 50S ribosomal protein L28 1304960 12867579 Deval_1119 Desulfovibrio vulgaris RCH1 50S ribosomal protein L28 YP_005701918.1 1304751 D 573059 CDS YP_005701919.1 387152983 12867580 1305267..1305827 1 NC_017310.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: dde:Dde_2422 FxsA protein; FxsA cytoplasmic membrane protein 1305827 12867580 Deval_1120 Desulfovibrio vulgaris RCH1 FxsA cytoplasmic membrane protein YP_005701919.1 1305267 D 573059 CDS YP_005701920.1 387152984 12867581 1305824..1306837 1 NC_017310.1 PFAM: Rhomboid family protein; KEGG: dde:Dde_2421 rhomboid family protein; rhomboid family protein 1306837 12867581 Deval_1121 Desulfovibrio vulgaris RCH1 rhomboid family protein YP_005701920.1 1305824 D 573059 CDS YP_005701921.1 387152985 12867582 complement(1307223..1309415) 1 NC_017310.1 PFAM: glycosyl transferase family 39; KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; glycosyl transferase family protein 1309415 12867582 Deval_1122 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005701921.1 1307223 R 573059 CDS YP_005701922.1 387152986 12867583 complement(1309412..1310068) 1 NC_017310.1 KEGG: dde:Dde_2419 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; phosphoesterase PA-phosphatase-like protein 1310068 12867583 Deval_1123 Desulfovibrio vulgaris RCH1 phosphoesterase PA-phosphatase-like protein YP_005701922.1 1309412 R 573059 CDS YP_005701923.1 387152987 12867584 1310704..1312113 1 NC_017310.1 KEGG: dde:Dde_2418 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 1312113 12867584 Deval_1124 Desulfovibrio vulgaris RCH1 MATE efflux family protein YP_005701923.1 1310704 D 573059 CDS YP_005701924.1 387152988 12867585 complement(1312444..1312743) 1 NC_017310.1 PFAM: protein of unknown function DUF77; KEGG: drt:Dret_0429 protein of unknown function DUF77; hypothetical protein 1312743 12867585 Deval_1125 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701924.1 1312444 R 573059 CDS YP_005701925.1 387152989 12867586 complement(1312797..1314992) 1 NC_017310.1 KEGG: dde:Dde_2414 hypothetical protein; hypothetical protein 1314992 12867586 Deval_1126 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701925.1 1312797 R 573059 CDS YP_005701926.1 387152990 12867587 1315159..1315983 1 NC_017310.1 PFAM: nitroreductase; KEGG: dde:Dde_2413 nitroreductase family protein; nitroreductase 1315983 12867587 Deval_1127 Desulfovibrio vulgaris RCH1 nitroreductase YP_005701926.1 1315159 D 573059 CDS YP_005701927.1 387152991 12867588 1316206..1316733 1 NC_017310.1 KEGG: dde:Dde_2410 hypothetical protein; hypothetical protein 1316733 12867588 Deval_1128 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701927.1 1316206 D 573059 CDS YP_005701928.1 387152992 12867589 complement(1316902..1318659) 1 NC_017310.1 PFAM: protein of unknown function DUF181; KEGG: dde:Dde_2408 hypothetical protein; hypothetical protein 1318659 12867589 Deval_1129 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701928.1 1316902 R 573059 CDS YP_005701929.1 387152993 12867590 1319188..1320036 1 NC_017310.1 SMART: AP endonuclease family 2; TIGRFAM: apurinic endonuclease Apn1; KEGG: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain-containing protein TIM barrel; apurinic endonuclease Apn1 1320036 12867590 Deval_1130 Desulfovibrio vulgaris RCH1 apurinic endonuclease Apn1 YP_005701929.1 1319188 D 573059 CDS YP_005701930.1 387152994 12867591 complement(1320523..1320975) 1 NC_017310.1 KEGG: dde:Dde_2314 hypothetical protein; hypothetical protein 1320975 12867591 Deval_1131 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701930.1 1320523 R 573059 CDS YP_005701931.1 387152995 12867592 complement(1321298..1321816) 1 NC_017310.1 PFAM: Redoxin domain protein; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin); Redoxin domain-containing protein 1321816 12867592 Deval_1132 Desulfovibrio vulgaris RCH1 Redoxin domain-containing protein YP_005701931.1 1321298 R 573059 CDS YP_005701932.1 387152996 12867593 1322119..1323327 1 NC_017310.1 KEGG: dde:Dde_2311 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; ammonium transporter 1323327 12867593 Deval_1133 Desulfovibrio vulgaris RCH1 ammonium transporter YP_005701932.1 1322119 D 573059 CDS YP_005701933.1 387152997 12867594 1323450..1323788 1 NC_017310.1 PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 1323788 12867594 Deval_1134 Desulfovibrio vulgaris RCH1 nitrogen regulatory protein P-II YP_005701933.1 1323450 D 573059 CDS YP_005701934.1 387152998 12867595 1323844..1326564 1 NC_017310.1 PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; KEGG: dde:Dde_2309 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD 1326564 12867595 Deval_1135 Desulfovibrio vulgaris RCH1 UTP-GlnB uridylyltransferase, GlnD YP_005701934.1 1323844 D 573059 CDS YP_005701935.1 387152999 12867596 1326623..1327366 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: dsa:Desal_0709 protein of unknown function DUF81; hypothetical protein 1327366 12867596 Deval_1136 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701935.1 1326623 D 573059 CDS YP_005701936.1 387153000 12867597 1327750..1328370 1 NC_017310.1 KEGG: pno:SNOG_08802 hypothetical protein; hypothetical protein 1328370 12867597 Deval_1137 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701936.1 1327750 D 573059 CDS YP_005701937.1 387153001 12867598 complement(1328750..1329493) 1 NC_017310.1 KEGG: dde:Dde_2308 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1329493 12867598 Deval_1138 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701937.1 1328750 R 573059 CDS YP_005701938.1 387153002 12867599 complement(1329480..1330268) 1 NC_017310.1 KEGG: dde:Dde_2307 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1330268 12867599 Deval_1139 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005701938.1 1329480 R 573059 CDS YP_005701939.1 387153003 12867600 complement(1330357..1331097) 1 NC_017310.1 KEGG: dde:Dde_2306 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; family 3 extracellular solute-binding protein 1331097 12867600 Deval_1140 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005701939.1 1330357 R 573059 CDS YP_005701940.1 387153004 12867601 complement(1331229..1331831) 1 NC_017310.1 PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein; hypothetical protein 1331831 12867601 Deval_1141 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701940.1 1331229 R 573059 CDS YP_005701941.1 387153005 12867602 complement(1331821..1332228) 1 NC_017310.1 KEGG: dde:Dde_2304 hypothetical protein; hypothetical protein 1332228 12867602 Deval_1142 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701941.1 1331821 R 573059 CDS YP_005701942.1 387153006 12867603 1332534..1332851 1 NC_017310.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dps:DP0971 hypothetical protein; cupin 1332851 12867603 Deval_1143 Desulfovibrio vulgaris RCH1 cupin YP_005701942.1 1332534 D 573059 CDS YP_005701943.1 387153007 12867604 complement(1332974..1333795) 1 NC_017310.1 PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like; VacJ family lipoprotein 1333795 12867604 Deval_1144 Desulfovibrio vulgaris RCH1 VacJ family lipoprotein YP_005701943.1 1332974 R 573059 CDS YP_005701944.1 387153008 12867605 complement(1333804..1334436) 1 NC_017310.1 PFAM: toluene tolerance family protein; KEGG: dds:Ddes_0533 toluene tolerance family protein; toluene tolerance family protein 1334436 12867605 Deval_1145 Desulfovibrio vulgaris RCH1 toluene tolerance family protein YP_005701944.1 1333804 R 573059 CDS YP_005701945.1 387153009 12867606 complement(1334440..1334886) 1 NC_017310.1 PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein; Mammalian cell entry related domain-containing protein 1334886 12867606 Deval_1146 Desulfovibrio vulgaris RCH1 Mammalian cell entry related domain-containing protein YP_005701945.1 1334440 R 573059 CDS YP_005701946.1 387153010 12867607 complement(1334995..1335819) 1 NC_017310.1 KEGG: dde:Dde_2298 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1335819 12867607 Deval_1147 Desulfovibrio vulgaris RCH1 ABC transporter YP_005701946.1 1334995 R 573059 CDS YP_005701947.1 387153011 12867608 complement(1335831..1336634) 1 NC_017310.1 PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein; hypothetical protein 1336634 12867608 Deval_1148 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701947.1 1335831 R 573059 CDS YP_005701948.1 387153012 12867609 complement(1336666..1337487) 1 NC_017310.1 PFAM: Sporulation domain-containing protein; KEGG: dsa:Desal_3691 sporulation domain protein; sporulation domain-containing protein 1337487 12867609 Deval_1149 Desulfovibrio vulgaris RCH1 sporulation domain-containing protein YP_005701948.1 1336666 R 573059 CDS YP_005701949.1 387153013 12867610 complement(1337508..1339163) 1 NC_017310.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: dde:Dde_2295 arginyl-tRNA synthetase; arginyl-tRNA synthetase 1339163 12867610 Deval_1150 Desulfovibrio vulgaris RCH1 arginyl-tRNA synthetase YP_005701949.1 1337508 R 573059 CDS YP_005701950.1 387153014 12867611 complement(1339394..1340347) 1 NC_017310.1 KEGG: dde:Dde_2294 [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase 1340347 12867611 Deval_1151 Desulfovibrio vulgaris RCH1 malonyl CoA-acyl carrier protein transacylase YP_005701950.1 1339394 R 573059 CDS YP_005701951.1 387153015 12867612 1340498..1341154 1 NC_017310.1 PFAM: glucose inhibited division protein; KEGG: dsa:Desal_3719 methyltransferase GidB; glucose inhibited division protein 1341154 12867612 Deval_1152 Desulfovibrio vulgaris RCH1 glucose inhibited division protein YP_005701951.1 1340498 D 573059 CDS YP_005701952.1 387153016 12867613 complement(1341115..1341333) 1 NC_017310.1 KEGG: dde:Dde_2292 hypothetical protein; hypothetical protein 1341333 12867613 Deval_1153 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701952.1 1341115 R 573059 CDS YP_005701953.1 387153017 12867614 1341462..1343738 1 NC_017310.1 PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: dds:Ddes_0746 oligosaccharyl transferase STT3 subunit; oligosaccharyl transferase STT3 subunit 1343738 12867614 Deval_1154 Desulfovibrio vulgaris RCH1 oligosaccharyl transferase STT3 subunit YP_005701953.1 1341462 D 573059 CDS YP_005701954.1 387153018 12867615 complement(1343956..1344426) 1 NC_017310.1 PFAM: protein of unknown function DUF163; KEGG: dde:Dde_2291 hypothetical protein; hypothetical protein 1344426 12867615 Deval_1155 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701954.1 1343956 R 573059 CDS YP_005701955.1 387153019 12867616 1344779..1345411 1 NC_017310.1 KEGG: dde:Dde_2289 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; Sua5/YciO/YrdC/YwlC family protein 1345411 12867616 Deval_1156 Desulfovibrio vulgaris RCH1 Sua5/YciO/YrdC/YwlC family protein YP_005701955.1 1344779 D 573059 CDS YP_005701956.1 387153020 12867617 complement(1345520..1346503) 1 NC_017310.1 PFAM: glycosyl transferase family 9; KEGG: drt:Dret_0811 glycosyl transferase family 9; glycosyl transferase family protein 1346503 12867617 Deval_1157 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005701956.1 1345520 R 573059 CDS YP_005701957.1 387153021 12867618 1346876..1347148 1 NC_017310.1 KEGG: dds:Ddes_2020 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 1347148 12867618 Deval_1158 Desulfovibrio vulgaris RCH1 RNP-1 like RNA-binding protein YP_005701957.1 1346876 D 573059 CDS YP_005701958.1 387153022 12867619 complement(1347295..1349475) 1 NC_017310.1 PFAM: glutamine synthetase catalytic region; KEGG: dma:DMR_10730 glutamine synthetase type III; glutamine synthetase 1349475 12867619 Deval_1159 Desulfovibrio vulgaris RCH1 glutamine synthetase YP_005701958.1 1347295 R 573059 CDS YP_005701959.1 387153023 12867620 1350175..1351458 1 NC_017310.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 1351458 12867620 Deval_1160 Desulfovibrio vulgaris RCH1 aromatic hydrocarbon degradation membrane protein YP_005701959.1 1350175 D 573059 CDS YP_005701960.1 387153024 12867621 complement(1351772..1353430) 1 NC_017310.1 PFAM: tail X family protein; KEGG: drt:Dret_1995 peptidoglycan-binding lysin domain protein; tail X family protein 1353430 12867621 Deval_1161 Desulfovibrio vulgaris RCH1 tail X family protein YP_005701960.1 1351772 R 573059 CDS YP_005701961.1 387153025 12867622 complement(1353541..1354650) 1 NC_017310.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dma:DMR_06690 twitching mobility protein; SMART: AAA ATPase; twitching motility protein 1354650 12867622 Deval_1162 Desulfovibrio vulgaris RCH1 twitching motility protein YP_005701961.1 1353541 R 573059 CDS YP_005701962.1 387153026 12867623 1354826..1355629 1 NC_017310.1 KEGG: drt:Dret_2409 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; prepilin peptidase 1355629 12867623 Deval_1163 Desulfovibrio vulgaris RCH1 prepilin peptidase YP_005701962.1 1354826 D 573059 CDS YP_005701963.1 387153027 12867624 complement(1355937..1356698) 1 NC_017310.1 PFAM: Lytic transglycosylase catalytic; KEGG: drt:Dret_1919 lytic transglycosylase catalytic; lytic transglycosylase 1356698 12867624 Deval_1164 Desulfovibrio vulgaris RCH1 lytic transglycosylase YP_005701963.1 1355937 R 573059 CDS YP_005701964.1 387153028 12867625 1356709..1357458 1 NC_017310.1 KEGG: mgr:MGG_12677 hypothetical protein; hypothetical protein 1357458 12867625 Deval_1165 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701964.1 1356709 D 573059 CDS YP_005701965.1 387153029 12867626 complement(1357909..1361346) 1 NC_017310.1 KEGG: dal:Dalk_4828 hypothetical protein; hypothetical protein 1361346 12867626 Deval_1166 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701965.1 1357909 R 573059 CDS YP_005701966.1 387153030 12867627 complement(1361357..1361917) 1 NC_017310.1 KEGG: dal:Dalk_4827 hypothetical protein; hypothetical protein 1361917 12867627 Deval_1167 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701966.1 1361357 R 573059 CDS YP_005701967.1 387153031 12867628 complement(1362037..1362606) 1 NC_017310.1 KEGG: dal:Dalk_4826 hypothetical protein; hypothetical protein 1362606 12867628 Deval_1168 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701967.1 1362037 R 573059 CDS YP_005701968.1 387153032 12867629 complement(1362751..1364031) 1 NC_017310.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dma:DMR_29520 putative twitching mobility protein; SMART: AAA ATPase; twitching motility protein 1364031 12867629 Deval_1169 Desulfovibrio vulgaris RCH1 twitching motility protein YP_005701968.1 1362751 R 573059 CDS YP_005701969.1 387153033 12867630 complement(1364099..1364524) 1 NC_017310.1 KEGG: dal:Dalk_4820 hypothetical protein; hypothetical protein 1364524 12867630 Deval_1170 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701969.1 1364099 R 573059 CDS YP_005701970.1 387153034 12867631 complement(1364637..1365863) 1 NC_017310.1 PFAM: Type II secretion system F domain; KEGG: drt:Dret_1997 type II secretion system F domain protein; type II secretion system F domain-containing protein 1365863 12867631 Deval_1171 Desulfovibrio vulgaris RCH1 type II secretion system F domain-containing protein YP_005701970.1 1364637 R 573059 CDS YP_005701971.1 387153035 12867632 complement(1365867..1367588) 1 NC_017310.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: drt:Dret_1996 type II secretion system protein E; type II secretion system protein E 1367588 12867632 Deval_1172 Desulfovibrio vulgaris RCH1 type II secretion system protein E YP_005701971.1 1365867 R 573059 CDS YP_005701972.1 387153036 12867633 complement(1367877..1369451) 1 NC_017310.1 PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dal:Dalk_4815 type II and III secretion system protein; type II and III secretion system protein 1369451 12867633 Deval_1173 Desulfovibrio vulgaris RCH1 type II and III secretion system protein YP_005701972.1 1367877 R 573059 CDS YP_005701973.1 387153037 12867634 complement(1369471..1369965) 1 NC_017310.1 KEGG: dma:DMR_06730 hypothetical protein; hypothetical protein 1369965 12867634 Deval_1174 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701973.1 1369471 R 573059 CDS YP_005701974.1 387153038 12867635 complement(1369970..1370521) 1 NC_017310.1 KEGG: drt:Dret_1992 hypothetical protein; hypothetical protein 1370521 12867635 Deval_1175 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701974.1 1369970 R 573059 CDS YP_005701975.1 387153039 12867636 complement(1370527..1372395) 1 NC_017310.1 KEGG: dma:DMR_06710 hypothetical protein; hypothetical protein 1372395 12867636 Deval_1176 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701975.1 1370527 R 573059 CDS YP_005701976.1 387153040 12867638 1373504..1375474 1 NC_017310.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: dde:Dde_1513 FtsH peptidase; PFAM: peptidase M41; AAA ATPase central domain protein; ATP-dependent metalloprotease FtsH 1375474 12867638 Deval_1177 Desulfovibrio vulgaris RCH1 ATP-dependent metalloprotease FtsH YP_005701976.1 1373504 D 573059 CDS YP_005701977.1 387153041 12867639 1375471..1376331 1 NC_017310.1 TIGRFAM: dihydropteroate synthase; KEGG: dde:Dde_1514 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 1376331 12867639 Deval_1178 Desulfovibrio vulgaris RCH1 dihydropteroate synthase YP_005701977.1 1375471 D 573059 CDS YP_005701978.1 387153042 12867640 1376340..1377086 1 NC_017310.1 PFAM: protein of unknown function DUF147; KEGG: dde:Dde_1515 hypothetical protein; hypothetical protein 1377086 12867640 Deval_1179 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701978.1 1376340 D 573059 CDS YP_005701979.1 387153043 12867641 1377088..1377990 1 NC_017310.1 PFAM: YbbR family protein; KEGG: dde:Dde_1516 hypothetical protein; hypothetical protein 1377990 12867641 Deval_1180 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701979.1 1377088 D 573059 CDS YP_005701980.1 387153044 12867642 1378050..1379402 1 NC_017310.1 KEGG: dde:Dde_1517 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase 1379402 12867642 Deval_1181 Desulfovibrio vulgaris RCH1 phosphoglucosamine mutase YP_005701980.1 1378050 D 573059 CDS YP_005701981.1 387153045 12867643 1379446..1380318 1 NC_017310.1 KEGG: dde:Dde_1518 UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1380318 12867643 Deval_1182 Desulfovibrio vulgaris RCH1 UTP-glucose-1-phosphate uridylyltransferase YP_005701981.1 1379446 D 573059 CDS YP_005701982.1 387153046 12867644 1380394..1382772 1 NC_017310.1 TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: dde:Dde_1519 replication restart DNA helicase PriA; SMART: helicase domain protein; DEAD-like helicase; primosomal protein N' 1382772 12867644 Deval_1183 Desulfovibrio vulgaris RCH1 primosomal protein N' YP_005701982.1 1380394 D 573059 CDS YP_005701983.1 387153047 12867645 1383022..1383414 1 NC_017310.1 KEGG: dde:Dde_1521 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 1383414 12867645 Deval_1184 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005701983.1 1383022 D 573059 CDS YP_005701984.1 387153048 12867646 complement(1383602..1384765) 1 NC_017310.1 PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit, putative; polysulfide reductase NrfD 1384765 12867646 Deval_1185 Desulfovibrio vulgaris RCH1 polysulfide reductase NrfD YP_005701984.1 1383602 R 573059 CDS YP_005701985.1 387153049 12867647 complement(1384777..1385562) 1 NC_017310.1 KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit, putative; reductase, iron-sulfur binding subunit 1385562 12867647 Deval_1186 Desulfovibrio vulgaris RCH1 reductase, iron-sulfur binding subunit YP_005701985.1 1384777 R 573059 CDS YP_005701986.1 387153050 12867648 complement(1385562..1385942) 1 NC_017310.1 KEGG: dde:Dde_2273 cytochrome c family protein; cytochrome c family protein 1385942 12867648 Deval_1187 Desulfovibrio vulgaris RCH1 cytochrome c family protein YP_005701986.1 1385562 R 573059 CDS YP_005701987.1 387153051 12867649 complement(1385945..1387555) 1 NC_017310.1 KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit, putative; reductase, iron-sulfur binding subunit 1387555 12867649 Deval_1188 Desulfovibrio vulgaris RCH1 reductase, iron-sulfur binding subunit YP_005701987.1 1385945 R 573059 CDS YP_005701988.1 387153052 12867650 complement(1387565..1388569) 1 NC_017310.1 PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative; nitrate reductase subunit gamma 1388569 12867650 Deval_1189 Desulfovibrio vulgaris RCH1 nitrate reductase subunit gamma YP_005701988.1 1387565 R 573059 CDS YP_005701989.1 387153053 12867651 complement(1388604..1389131) 1 NC_017310.1 KEGG: dde:Dde_2270 hypothetical protein; hypothetical protein 1389131 12867651 Deval_1190 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701989.1 1388604 R 573059 CDS YP_005701990.1 387153054 12867652 complement(1389342..1390289) 1 NC_017310.1 KEGG: dds:Ddes_0453 hypothetical protein; hypothetical protein 1390289 12867652 Deval_1191 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701990.1 1389342 R 573059 CDS YP_005701991.1 387153055 12867653 1390380..1391078 1 NC_017310.1 PFAM: protein of unknown function DUF45; KEGG: dba:Dbac_0875 protein of unknown function DUF45; hypothetical protein 1391078 12867653 Deval_1192 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005701991.1 1390380 D 573059 CDS YP_005701992.1 387153056 12867654 complement(1391230..1392513) 1 NC_017310.1 TIGRFAM: sulfate adenylyltransferase; KEGG: dde:Dde_2265 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; sulfate adenylyltransferase 1392513 12867654 Deval_1193 Desulfovibrio vulgaris RCH1 sulfate adenylyltransferase YP_005701992.1 1391230 R 573059 CDS YP_005701993.1 387153057 12867655 1393151..1393522 1 NC_017310.1 KEGG: dde:Dde_2263 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; 30S ribosomal protein S12 1393522 12867655 Deval_1194 Desulfovibrio vulgaris RCH1 30S ribosomal protein S12 YP_005701993.1 1393151 D 573059 CDS YP_005701994.1 387153058 12867656 1393538..1394008 1 NC_017310.1 KEGG: lip:LI0943 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; 30S ribosomal protein S7 1394008 12867656 Deval_1195 Desulfovibrio vulgaris RCH1 30S ribosomal protein S7 YP_005701994.1 1393538 D 573059 CDS YP_005701995.1 387153059 12867657 1394048..1396099 1 NC_017310.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; KEGG: dds:Ddes_2069 translation elongation factor G; SMART: elongation factor G domain IV; elongation factor G domain-containing protein; translation elongation factor G 1396099 12867657 Deval_1196 Desulfovibrio vulgaris RCH1 translation elongation factor G YP_005701995.1 1394048 D 573059 CDS YP_005701996.1 387153060 12867658 1396749..1397066 1 NC_017310.1 KEGG: dde:Dde_2258 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; 30S ribosomal protein S10 1397066 12867658 Deval_1197 Desulfovibrio vulgaris RCH1 30S ribosomal protein S10 YP_005701996.1 1396749 D 573059 CDS YP_005701997.1 387153061 12867659 1397079..1397708 1 NC_017310.1 KEGG: dde:Dde_2257 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; 50S ribosomal protein L3 1397708 12867659 Deval_1198 Desulfovibrio vulgaris RCH1 50S ribosomal protein L3 YP_005701997.1 1397079 D 573059 CDS YP_005701998.1 387153062 12867660 1397727..1398347 1 NC_017310.1 PFAM: ribosomal protein L4/L1e; KEGG: dde:Dde_2256 50S ribosomal protein L4; 50S ribosomal protein L4 1398347 12867660 Deval_1199 Desulfovibrio vulgaris RCH1 50S ribosomal protein L4 YP_005701998.1 1397727 D 573059 CDS YP_005701999.1 387153063 12867661 1398361..1398651 1 NC_017310.1 PFAM: Ribosomal protein L25/L23; KEGG: dde:Dde_2255 50S ribosomal protein L23; 50S ribosomal protein L25 1398651 12867661 Deval_1200 Desulfovibrio vulgaris RCH1 50S ribosomal protein L25 YP_005701999.1 1398361 D 573059 CDS YP_005702000.1 387153064 12867662 1398655..1399485 1 NC_017310.1 KEGG: dde:Dde_2254 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; 50S ribosomal protein L2 1399485 12867662 Deval_1201 Desulfovibrio vulgaris RCH1 50S ribosomal protein L2 YP_005702000.1 1398655 D 573059 CDS YP_005702001.1 387153065 12867663 1399495..1399776 1 NC_017310.1 KEGG: dds:Ddes_0664 ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; 30S ribosomal protein S19 1399776 12867663 Deval_1202 Desulfovibrio vulgaris RCH1 30S ribosomal protein S19 YP_005702001.1 1399495 D 573059 CDS YP_005702002.1 387153066 12867664 1399789..1400127 1 NC_017310.1 KEGG: dds:Ddes_0665 ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; 50S ribosomal protein L22 1400127 12867664 Deval_1203 Desulfovibrio vulgaris RCH1 50S ribosomal protein L22 YP_005702002.1 1399789 D 573059 CDS YP_005702003.1 387153067 12867665 1400132..1400770 1 NC_017310.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: dde:Dde_2251 30S ribosomal protein S3; SMART: KH domain protein; 30S ribosomal protein S3 1400770 12867665 Deval_1204 Desulfovibrio vulgaris RCH1 30S ribosomal protein S3 YP_005702003.1 1400132 D 573059 CDS YP_005702004.1 387153068 12867666 1400773..1401186 1 NC_017310.1 KEGG: dds:Ddes_0667 ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 1401186 12867666 Deval_1205 Desulfovibrio vulgaris RCH1 50S ribosomal protein L16 YP_005702004.1 1400773 D 573059 CDS YP_005702005.1 387153069 12867667 1401188..1401373 1 NC_017310.1 KEGG: dde:Dde_2249 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; 50S ribosomal protein L29 1401373 12867667 Deval_1206 Desulfovibrio vulgaris RCH1 50S ribosomal protein L29 YP_005702005.1 1401188 D 573059 CDS YP_005702006.1 387153070 12867668 1401384..1401650 1 NC_017310.1 KEGG: dds:Ddes_0669 ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; 30S ribosomal protein S17 1401650 12867668 Deval_1207 Desulfovibrio vulgaris RCH1 30S ribosomal protein S17 YP_005702006.1 1401384 D 573059 CDS YP_005702007.1 387153071 12867669 1401661..1402029 1 NC_017310.1 KEGG: lip:LI0969 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; 50S ribosomal protein L14 1402029 12867669 Deval_1208 Desulfovibrio vulgaris RCH1 50S ribosomal protein L14 YP_005702007.1 1401661 D 573059 CDS YP_005702008.1 387153072 12867670 1402039..1402362 1 NC_017310.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dde:Dde_2246 50S ribosomal protein L24; SMART: KOW domain protein; 50S ribosomal protein L24 1402362 12867670 Deval_1209 Desulfovibrio vulgaris RCH1 50S ribosomal protein L24 YP_005702008.1 1402039 D 573059 CDS YP_005702009.1 387153073 12867671 1402374..1402913 1 NC_017310.1 KEGG: dds:Ddes_0672 ribosomal protein L5; 50S ribosomal protein L5 1402913 12867671 Deval_1210 Desulfovibrio vulgaris RCH1 50S ribosomal protein L5 YP_005702009.1 1402374 D 573059 CDS YP_005702010.1 387153074 12867672 1402926..1403111 1 NC_017310.1 PFAM: ribosomal protein S14; KEGG: dde:Dde_2244 30S ribosomal protein S14; 30S ribosomal protein S14 1403111 12867672 Deval_1211 Desulfovibrio vulgaris RCH1 30S ribosomal protein S14 YP_005702010.1 1402926 D 573059 CDS YP_005702011.1 387153075 12867673 1403130..1403510 1 NC_017310.1 PFAM: ribosomal protein S8; KEGG: dds:Ddes_0674 ribosomal protein S8; 30S ribosomal protein S8 1403510 12867673 Deval_1212 Desulfovibrio vulgaris RCH1 30S ribosomal protein S8 YP_005702011.1 1403130 D 573059 CDS YP_005702012.1 387153076 12867674 1403523..1404062 1 NC_017310.1 KEGG: dde:Dde_2242 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 1404062 12867674 Deval_1213 Desulfovibrio vulgaris RCH1 50S ribosomal protein L6 YP_005702012.1 1403523 D 573059 CDS YP_005702013.1 387153077 12867675 1404076..1404435 1 NC_017310.1 KEGG: dds:Ddes_0676 ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 1404435 12867675 Deval_1214 Desulfovibrio vulgaris RCH1 50S ribosomal protein L18 YP_005702013.1 1404076 D 573059 CDS YP_005702014.1 387153078 12867676 1404455..1404946 1 NC_017310.1 KEGG: dde:Dde_2240 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; 30S ribosomal protein S5 1404946 12867676 Deval_1215 Desulfovibrio vulgaris RCH1 30S ribosomal protein S5 YP_005702014.1 1404455 D 573059 CDS YP_005702015.1 387153079 12867677 1404956..1405126 1 NC_017310.1 KEGG: dsa:Desal_1203 ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; 50S ribosomal protein L30 1405126 12867677 Deval_1216 Desulfovibrio vulgaris RCH1 50S ribosomal protein L30 YP_005702015.1 1404956 D 573059 CDS YP_005702016.1 387153080 12867678 1405126..1405572 1 NC_017310.1 TIGRFAM: ribosomal protein L15; KEGG: dde:Dde_2238 50S ribosomal protein L15; 50S ribosomal protein L15 1405572 12867678 Deval_1217 Desulfovibrio vulgaris RCH1 50S ribosomal protein L15 YP_005702016.1 1405126 D 573059 CDS YP_005702017.1 387153081 12867679 1405576..1406889 1 NC_017310.1 manually curated; TIGRFAM: preprotein translocase, SecY subunit; KEGG: dde:Dde_2237 preprotein translocase subunit SecY; PFAM: SecY protein; preprotein translocase subunit SecY 1406889 12867679 Deval_1218 Desulfovibrio vulgaris RCH1 preprotein translocase subunit SecY YP_005702017.1 1405576 D 573059 CDS YP_005702018.1 387153082 12867680 1406891..1407670 1 NC_017310.1 manually curated; TIGRFAM: methionine aminopeptidase, type I; KEGG: dde:Dde_2236 methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 1407670 12867680 Deval_1219 Desulfovibrio vulgaris RCH1 methionine aminopeptidase YP_005702018.1 1406891 D 573059 CDS YP_005702019.1 387153083 12867681 1407764..1407877 1 NC_017310.1 KEGG: dds:Ddes_0682 ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; 50S ribosomal protein L36 1407877 12867681 Deval_1220 Desulfovibrio vulgaris RCH1 50S ribosomal protein L36 YP_005702019.1 1407764 D 573059 CDS YP_005702020.1 387153084 12867682 1407896..1408264 1 NC_017310.1 KEGG: dde:Dde_2234 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13; 30S ribosomal protein S13 1408264 12867682 Deval_1221 Desulfovibrio vulgaris RCH1 30S ribosomal protein S13 YP_005702020.1 1407896 D 573059 CDS YP_005702021.1 387153085 12867683 1408413..1408802 1 NC_017310.1 KEGG: dde:Dde_2233 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; 30S ribosomal protein S11 1408802 12867683 Deval_1222 Desulfovibrio vulgaris RCH1 30S ribosomal protein S11 YP_005702021.1 1408413 D 573059 CDS YP_005702022.1 387153086 12867684 1408818..1409444 1 NC_017310.1 TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: dds:Ddes_0685 ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 1409444 12867684 Deval_1223 Desulfovibrio vulgaris RCH1 30S ribosomal protein S4 YP_005702022.1 1408818 D 573059 CDS YP_005702023.1 387153087 12867685 1409457..1410500 1 NC_017310.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: dde:Dde_2231 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 1410500 12867685 Deval_1224 Desulfovibrio vulgaris RCH1 DNA-directed RNA polymerase subunit alpha YP_005702023.1 1409457 D 573059 CDS YP_005702024.1 387153088 12867686 1410490..1410891 1 NC_017310.1 KEGG: dde:Dde_2230 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; 50S ribosomal protein L17 1410891 12867686 Deval_1225 Desulfovibrio vulgaris RCH1 50S ribosomal protein L17 YP_005702024.1 1410490 D 573059 CDS YP_005702025.1 387153089 12867687 1411033..1411959 1 NC_017310.1 KEGG: dde:Dde_2226 LysR family transcriptional regulator; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR; LysR family transcriptional regulator 1411959 12867687 Deval_1226 Desulfovibrio vulgaris RCH1 LysR family transcriptional regulator YP_005702025.1 1411033 D 573059 CDS YP_005702026.1 387153090 12867688 1411949..1413004 1 NC_017310.1 manually curated; KEGG: dsa:Desal_0640 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; Contains selenocysteine; selenide, water dikinase 1413004 12867688 Deval_1227 Desulfovibrio vulgaris RCH1 selenide, water dikinase YP_005702026.1 1411949 D 573059 CDS YP_005702027.1 387153091 12867690 1413303..1414604 1 NC_017310.1 KEGG: dde:Dde_2222 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type; trigger factor 1414604 12867690 Deval_1228 Desulfovibrio vulgaris RCH1 trigger factor YP_005702027.1 1413303 D 573059 CDS YP_005702028.1 387153092 12867691 1414791..1415396 1 NC_017310.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: dde:Dde_2220 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 1415396 12867691 Deval_1229 Desulfovibrio vulgaris RCH1 ATP-dependent Clp protease, proteolytic subunit ClpP YP_005702028.1 1414791 D 573059 CDS YP_005702029.1 387153093 12867692 1415407..1416660 1 NC_017310.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: dde:Dde_2219 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 1416660 12867692 Deval_1230 Desulfovibrio vulgaris RCH1 ATP-dependent Clp protease ATP-binding subunit ClpX YP_005702029.1 1415407 D 573059 CDS YP_005702030.1 387153094 12867693 1416779..1419244 1 NC_017310.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: dde:Dde_2218 Lon-A peptidase; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATP-dependent protease La 1419244 12867693 Deval_1231 Desulfovibrio vulgaris RCH1 ATP-dependent protease La YP_005702030.1 1416779 D 573059 CDS YP_005702031.1 387153095 12867694 complement(1419407..1419991) 1 NC_017310.1 KEGG: dds:Ddes_0947 hypothetical protein; hypothetical protein 1419991 12867694 Deval_1232 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702031.1 1419407 R 573059 CDS YP_005702032.1 387153096 12867695 complement(1420000..1420287) 1 NC_017310.1 KEGG: dds:Ddes_0948 hypothetical protein; hypothetical protein 1420287 12867695 Deval_1233 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702032.1 1420000 R 573059 CDS YP_005702033.1 387153097 12867696 complement(1420292..1421122) 1 NC_017310.1 KEGG: lip:LI0208 hypothetical protein; hypothetical protein 1421122 12867696 Deval_1234 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702033.1 1420292 R 573059 CDS YP_005702034.1 387153098 12867697 complement(1421284..1421778) 1 NC_017310.1 PFAM: ferric-uptake regulator; KEGG: dma:DMR_26810 Fur family transcriptional regulator; ferric uptake regulator family protein 1421778 12867697 Deval_1235 Desulfovibrio vulgaris RCH1 ferric uptake regulator family protein YP_005702034.1 1421284 R 573059 CDS YP_005702035.1 387153099 12867698 complement(1421775..1422599) 1 NC_017310.1 PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein; ABC-3 protein 1422599 12867698 Deval_1236 Desulfovibrio vulgaris RCH1 ABC-3 protein YP_005702035.1 1421775 R 573059 CDS YP_005702036.1 387153100 12867699 complement(1422601..1423407) 1 NC_017310.1 KEGG: dde:Dde_2209 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1423407 12867699 Deval_1237 Desulfovibrio vulgaris RCH1 ABC transporter YP_005702036.1 1422601 R 573059 CDS YP_005702037.1 387153101 12867700 complement(1423410..1424417) 1 NC_017310.1 PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein; periplasmic solute binding protein 1424417 12867700 Deval_1238 Desulfovibrio vulgaris RCH1 periplasmic solute binding protein YP_005702037.1 1423410 R 573059 CDS YP_005702038.1 387153102 12867701 1424748..1425839 1 NC_017310.1 KEGG: dde:Dde_2207 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1425839 12867701 Deval_1239 Desulfovibrio vulgaris RCH1 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_005702038.1 1424748 D 573059 CDS YP_005702039.1 387153103 12867702 1425839..1427563 1 NC_017310.1 KEGG: dde:Dde_2206 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; prolyl-tRNA synthetase 1427563 12867702 Deval_1240 Desulfovibrio vulgaris RCH1 prolyl-tRNA synthetase YP_005702039.1 1425839 D 573059 CDS YP_005702040.1 387153104 12867703 1427610..1429007 1 NC_017310.1 KEGG: dde:Dde_2204 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1429007 12867703 Deval_1241 Desulfovibrio vulgaris RCH1 exodeoxyribonuclease VII large subunit YP_005702040.1 1427610 D 573059 CDS YP_005702041.1 387153105 12867704 1429000..1429950 1 NC_017310.1 PFAM: Peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase; peptidase M23 1429950 12867704 Deval_1242 Desulfovibrio vulgaris RCH1 peptidase M23 YP_005702041.1 1429000 D 573059 CDS YP_005702042.1 387153106 12867705 1429962..1430207 1 NC_017310.1 PFAM: Exonuclease VII small subunit; KEGG: dde:Dde_2202 exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit 1430207 12867705 Deval_1243 Desulfovibrio vulgaris RCH1 Exonuclease VII small subunit YP_005702042.1 1429962 D 573059 CDS YP_005702043.1 387153107 12867706 1430191..1431090 1 NC_017310.1 KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; farnesyltranstransferase 1431090 12867706 Deval_1244 Desulfovibrio vulgaris RCH1 farnesyltranstransferase YP_005702043.1 1430191 D 573059 CDS YP_005702044.1 387153108 12867707 1431130..1433055 1 NC_017310.1 KEGG: dde:Dde_2200 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein; deoxyxylulose-5-phosphate synthase 1433055 12867707 Deval_1245 Desulfovibrio vulgaris RCH1 deoxyxylulose-5-phosphate synthase YP_005702044.1 1431130 D 573059 CDS YP_005702045.1 387153109 12867708 complement(1433298..1433918) 1 NC_017310.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 1433918 12867708 Deval_1246 Desulfovibrio vulgaris RCH1 multiple antibiotic resistance (MarC)-like protein YP_005702045.1 1433298 R 573059 CDS YP_005702046.1 387153110 12867709 complement(1434030..1434419) 1 NC_017310.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase, putative; 6-pyruvoyl-tetrahydropterin synthase 1434419 12867709 Deval_1247 Desulfovibrio vulgaris RCH1 6-pyruvoyl-tetrahydropterin synthase YP_005702046.1 1434030 R 573059 CDS YP_005702047.1 387153111 12867710 complement(1434421..1437915) 1 NC_017310.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dde:Dde_2196 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III subunit alpha 1437915 12867710 Deval_1248 Desulfovibrio vulgaris RCH1 DNA polymerase III subunit alpha YP_005702047.1 1434421 R 573059 CDS YP_005702048.1 387153112 12867711 1438151..1438369 1 NC_017310.1 hypothetical protein 1438369 12867711 Deval_1249 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702048.1 1438151 D 573059 CDS YP_005702049.1 387153113 12867712 1438393..1438761 1 NC_017310.1 KEGG: dde:Dde_2194 hypothetical protein; hypothetical protein 1438761 12867712 Deval_1250 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702049.1 1438393 D 573059 CDS YP_005702050.1 387153114 12867713 1438754..1439572 1 NC_017310.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dds:Ddes_1232 metal dependent phosphohydrolase; metal-dependent phosphohydrolase HD sub domain-containing protein 1439572 12867713 Deval_1251 Desulfovibrio vulgaris RCH1 metal-dependent phosphohydrolase HD sub domain-containing protein YP_005702050.1 1438754 D 573059 CDS YP_005702051.1 387153115 12867714 1439569..1440195 1 NC_017310.1 PFAM: Methyltransferase type 11; KEGG: dde:Dde_2191 hypothetical protein; type 11 methyltransferase 1440195 12867714 Deval_1252 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005702051.1 1439569 D 573059 CDS YP_005702052.1 387153116 12867715 complement(1440414..1441106) 1 NC_017310.1 KEGG: sfu:Sfum_3208 hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1441106 12867715 Deval_1253 Desulfovibrio vulgaris RCH1 HAD-superfamily hydrolase YP_005702052.1 1440414 R 573059 CDS YP_005702053.1 387153117 12867716 complement(1441103..1442263) 1 NC_017310.1 KEGG: dds:Ddes_1127 hypothetical protein; hypothetical protein 1442263 12867716 Deval_1254 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702053.1 1441103 R 573059 CDS YP_005702054.1 387153118 12867717 1442361..1443356 1 NC_017310.1 KEGG: dde:Dde_2187 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 1443356 12867717 Deval_1255 Desulfovibrio vulgaris RCH1 UDP-glucose 4-epimerase YP_005702054.1 1442361 D 573059 CDS YP_005702055.1 387153119 12867718 complement(1443438..1444568) 1 NC_017310.1 TIGRFAM: lipid-A-disaccharide synthase; KEGG: dde:Dde_2185 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 1444568 12867718 Deval_1256 Desulfovibrio vulgaris RCH1 lipid-A-disaccharide synthase YP_005702055.1 1443438 R 573059 CDS YP_005702056.1 387153120 12867719 complement(1444570..1445538) 1 NC_017310.1 KEGG: dde:Dde_2184 hypothetical protein; hypothetical protein 1445538 12867719 Deval_1257 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702056.1 1444570 R 573059 CDS YP_005702057.1 387153121 12867720 complement(1445566..1446441) 1 NC_017310.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2183 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1446441 12867720 Deval_1258 Desulfovibrio vulgaris RCH1 dTDP-4-dehydrorhamnose reductase YP_005702057.1 1445566 R 573059 CDS YP_005702058.1 387153122 12867721 complement(1446438..1447460) 1 NC_017310.1 KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase 1447460 12867721 Deval_1259 Desulfovibrio vulgaris RCH1 dTDP-glucose 4,6-dehydratase YP_005702058.1 1446438 R 573059 CDS YP_005702059.1 387153123 12867722 1447648..1448496 1 NC_017310.1 KEGG: dde:Dde_2181 heme-binding protein, putative; PFAM: anaerobic cobalt chelatase; Sirohydrochlorin cobaltochelatase 1448496 12867722 Deval_1260 Desulfovibrio vulgaris RCH1 Sirohydrochlorin cobaltochelatase YP_005702059.1 1447648 D 573059 CDS YP_005702060.1 387153124 12867723 1448657..1449562 1 NC_017310.1 KEGG: dde:Dde_2178 putative lipoprotein; putative lipoprotein 1449562 12867723 Deval_1261 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005702060.1 1448657 D 573059 CDS YP_005702061.1 387153125 12867724 complement(1449625..1449822) 1 NC_017310.1 manually curated; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; KEGG: dds:Ddes_1121 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit 1449822 12867724 Deval_1262 Desulfovibrio vulgaris RCH1 twin-arginine translocation protein, TatA/E family subunit YP_005702061.1 1449625 R 573059 CDS YP_005702062.1 387153126 12867725 1449934..1451556 1 NC_017310.1 KEGG: dde:Dde_2176 rhodanese-like protein; PFAM: Rhodanese domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 1451556 12867725 Deval_1263 Desulfovibrio vulgaris RCH1 Rhodanese domain-containing protein YP_005702062.1 1449934 D 573059 CDS YP_005702063.1 387153127 12867726 1451553..1452002 1 NC_017310.1 KEGG: dde:Dde_2175 hypothetical protein; hypothetical protein 1452002 12867726 Deval_1264 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702063.1 1451553 D 573059 CDS YP_005702064.1 387153128 12867727 1452015..1452887 1 NC_017310.1 KEGG: dde:Dde_2174 hypothetical protein; hypothetical protein 1452887 12867727 Deval_1265 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702064.1 1452015 D 573059 CDS YP_005702065.1 387153129 12867728 1452898..1453572 1 NC_017310.1 KEGG: dde:Dde_2173 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1453572 12867728 Deval_1266 Desulfovibrio vulgaris RCH1 HAD-superfamily hydrolase YP_005702065.1 1452898 D 573059 CDS YP_005702066.1 387153130 12867729 1453677..1453979 1 NC_017310.1 PFAM: protein of unknown function YGGT; KEGG: drt:Dret_1665 protein of unknown function YGGT; hypothetical protein 1453979 12867729 Deval_1267 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702066.1 1453677 D 573059 CDS YP_005702067.1 387153131 12867730 1453988..1454497 1 NC_017310.1 KEGG: dde:Dde_2171 cell-division initiation protein DivIVA; TIGRFAM: DivIVA domain; PFAM: DivIVA family protein; DivIVA domain-containing protein 1454497 12867730 Deval_1268 Desulfovibrio vulgaris RCH1 DivIVA domain-containing protein YP_005702067.1 1453988 D 573059 CDS YP_005702068.1 387153132 12867731 1454490..1454810 1 NC_017310.1 PFAM: protein of unknown function DUF167; KEGG: drt:Dret_1664 protein of unknown function DUF167; hypothetical protein 1454810 12867731 Deval_1269 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702068.1 1454490 D 573059 CDS YP_005702069.1 387153133 12867732 1454831..1455061 1 NC_017310.1 KEGG: dds:Ddes_1902 hypothetical protein; hypothetical protein 1455061 12867732 Deval_1270 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702069.1 1454831 D 573059 CDS YP_005702070.1 387153134 12867733 1455062..1456753 1 NC_017310.1 KEGG: dde:Dde_2168 acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; acetolactate synthase large subunit 1456753 12867733 Deval_1271 Desulfovibrio vulgaris RCH1 acetolactate synthase large subunit YP_005702070.1 1455062 D 573059 CDS YP_005702071.1 387153135 12867734 1456763..1457251 1 NC_017310.1 KEGG: dde:Dde_2167 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase small subunit 1457251 12867734 Deval_1272 Desulfovibrio vulgaris RCH1 acetolactate synthase small subunit YP_005702071.1 1456763 D 573059 CDS YP_005702072.1 387153136 12867735 1457373..1458368 1 NC_017310.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: dde:Dde_2166 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase 1458368 12867735 Deval_1273 Desulfovibrio vulgaris RCH1 ketol-acid reductoisomerase YP_005702072.1 1457373 D 573059 CDS YP_005702073.1 387153137 12867736 complement(1458842..1459057) 1 NC_017310.1 KEGG: dde:Dde_2165 hypothetical protein; hypothetical protein 1459057 12867736 Deval_1274 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702073.1 1458842 R 573059 CDS YP_005702074.1 387153138 12867737 complement(1459118..1459441) 1 NC_017310.1 KEGG: dde:Dde_2018 HesB-like domain-containing protein; manually curated; PFAM: HesB/YadR/YfhF-family protein; Contains selenocysteine; HesB/YadR/YfhF-family protein 1459441 12867737 Deval_1275 Desulfovibrio vulgaris RCH1 HesB/YadR/YfhF-family protein YP_005702074.1 1459118 R 573059 CDS YP_005702075.1 387153139 12867738 complement(1459531..1459833) 1 NC_017310.1 KEGG: dde:Dde_2018 HesB-like domain-containing protein; HesB-like domain-containing protein 1459833 12867738 Deval_1276 Desulfovibrio vulgaris RCH1 HesB-like domain-containing protein YP_005702075.1 1459531 R 573059 CDS YP_005702076.1 387153140 12867739 1459979..1460515 1 NC_017310.1 PFAM: phosphoribosyltransferase; KEGG: dds:Ddes_0906 uracil phosphoribosyltransferase; phosphoribosyltransferase 1460515 12867739 Deval_1277 Desulfovibrio vulgaris RCH1 phosphoribosyltransferase YP_005702076.1 1459979 D 573059 CDS YP_005702077.1 387153141 12867740 complement(1460848..1462398) 1 NC_017310.1 KEGG: dds:Ddes_1045 hypothetical protein; hypothetical protein 1462398 12867740 Deval_1278 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702077.1 1460848 R 573059 CDS YP_005702078.1 387153142 12867741 1462707..1464017 1 NC_017310.1 PFAM: Protein of unknown function DUF2172, aminopeptidase-like; KEGG: gsu:GSU1966 hypothetical protein; hypothetical protein 1464017 12867741 Deval_1279 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702078.1 1462707 D 573059 CDS YP_005702079.1 387153143 12867742 1464190..1464945 1 NC_017310.1 PFAM: extracellular solute-binding protein family 3; KEGG: dsa:Desal_0670 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1464945 12867742 Deval_1280 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005702079.1 1464190 D 573059 CDS YP_005702080.1 387153144 12867743 complement(1465182..1466315) 1 NC_017310.1 KEGG: dds:Ddes_1132 hypothetical protein; hypothetical protein 1466315 12867743 Deval_1281 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702080.1 1465182 R 573059 CDS YP_005702081.1 387153145 12867744 complement(1466500..1466967) 1 NC_017310.1 KEGG: aga:AgaP_AGAP010539 AGAP010539-PA; hypothetical protein 1466967 12867744 Deval_1282 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702081.1 1466500 R 573059 CDS YP_005702082.1 387153146 12867745 complement(1467189..1467674) 1 NC_017310.1 KEGG: dma:DMR_39120 hypothetical protein; hypothetical protein 1467674 12867745 Deval_1283 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702082.1 1467189 R 573059 CDS YP_005702083.1 387153147 12867746 1467956..1468672 1 NC_017310.1 PFAM: NLP/P60 protein; KEGG: dma:DMR_17960 NlpC/P60 family protein; NLP/P60 protein 1468672 12867746 Deval_1284 Desulfovibrio vulgaris RCH1 NLP/P60 protein YP_005702083.1 1467956 D 573059 CDS YP_005702084.1 387153148 12867747 1468935..1469156 1 NC_017310.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator; phage/conjugal plasmid C-4 type zinc finger protein, TraR family 1469156 12867747 Deval_1285 Desulfovibrio vulgaris RCH1 phage/conjugal plasmid C-4 type zinc finger protein, TraR family YP_005702084.1 1468935 D 573059 CDS YP_005702085.1 387153149 12867748 complement(1469605..1470144) 1 NC_017310.1 PFAM: Ferritin Dps family protein; KEGG: dba:Dbac_0293 ferritin Dps family protein; ferritin Dps family protein 1470144 12867748 Deval_1286 Desulfovibrio vulgaris RCH1 ferritin Dps family protein YP_005702085.1 1469605 R 573059 CDS YP_005702086.1 387153150 12867749 1470413..1470577 1 NC_017310.1 KEGG: dma:DMR_01390 methyl-accepting chemotaxis protein; hypothetical protein 1470577 12867749 Deval_1287 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702086.1 1470413 D 573059 CDS YP_005702087.1 387153151 12867750 complement(1470540..1471382) 1 NC_017310.1 PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit; integrase catalytic subunit 1471382 12867750 Deval_1288 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005702087.1 1470540 R 573059 CDS YP_005702088.1 387153152 12867751 complement(1471379..1471777) 1 NC_017310.1 KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1471777 12867751 Deval_1289 Desulfovibrio vulgaris RCH1 transposase IS3/IS911 family protein YP_005702088.1 1471379 R 573059 CDS YP_005702089.1 387153153 12867753 1472132..1472743 1 NC_017310.1 PFAM: Protein of unkown function DUF1819 putative inner membrane; KEGG: cpb:Cphamn1_1682 hypothetical protein; hypothetical protein 1472743 12867753 Deval_1291 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702089.1 1472132 D 573059 CDS YP_005702090.1 387153154 12867754 1472743..1473354 1 NC_017310.1 PFAM: Domain of unknown function DUF1788; KEGG: cpb:Cphamn1_1681 hypothetical protein; hypothetical protein 1473354 12867754 Deval_1292 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702090.1 1472743 D 573059 CDS YP_005702091.1 387153155 12867755 1473369..1476917 1 NC_017310.1 KEGG: cpb:Cphamn1_1680 hypothetical protein; hypothetical protein 1476917 12867755 Deval_1293 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702091.1 1473369 D 573059 CDS YP_005702092.1 387153156 12867756 1476914..1477978 1 NC_017310.1 KEGG: cpb:Cphamn1_1679 hypothetical protein; hypothetical protein 1477978 12867756 Deval_1294 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702092.1 1476914 D 573059 CDS YP_005702093.1 387153157 12867757 1477975..1478514 1 NC_017310.1 KEGG: cpb:Cphamn1_1678 hypothetical protein; hypothetical protein 1478514 12867757 Deval_1295 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702093.1 1477975 D 573059 CDS YP_005702094.1 387153158 12867758 1478519..1481995 1 NC_017310.1 KEGG: cpb:Cphamn1_1677 hypothetical protein; hypothetical protein 1481995 12867758 Deval_1296 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702094.1 1478519 D 573059 CDS YP_005702095.1 387153159 12867759 1481995..1482462 1 NC_017310.1 KEGG: cpb:Cphamn1_2551 hypothetical protein; hypothetical protein 1482462 12867759 Deval_1297 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702095.1 1481995 D 573059 CDS YP_005702096.1 387153160 12867760 1482459..1484957 1 NC_017310.1 PFAM: PglZ domain protein; KEGG: cpb:Cphamn1_1676 PglZ domain protein; PglZ domain-containing protein 1484957 12867760 Deval_1298 Desulfovibrio vulgaris RCH1 PglZ domain-containing protein YP_005702096.1 1482459 D 573059 CDS YP_005702097.1 387153161 12867761 1484972..1487041 1 NC_017310.1 KEGG: cpb:Cphamn1_1675 hypothetical protein; hypothetical protein 1487041 12867761 Deval_1299 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702097.1 1484972 D 573059 CDS YP_005702098.1 387153162 12867762 1487031..1487246 1 NC_017310.1 KEGG: ctt:CtCNB1_2429 hypothetical protein; hypothetical protein 1487246 12867762 Deval_1300 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702098.1 1487031 D 573059 CDS YP_005702099.1 387153163 12867763 1487287..1488528 1 NC_017310.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: acr:Acry_3487 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1488528 12867763 Deval_1301 Desulfovibrio vulgaris RCH1 transposase IS204/IS1001/IS1096/IS1165 family protein YP_005702099.1 1487287 D 573059 CDS YP_005702100.1 387153164 12867765 1489638..1490813 1 NC_017310.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: dba:Dbac_1920 beta-lactamase domain protein; flavodoxin/nitric oxide synthase 1490813 12867765 Deval_1303 Desulfovibrio vulgaris RCH1 flavodoxin/nitric oxide synthase YP_005702100.1 1489638 D 573059 CDS YP_005702101.1 387153165 12867766 1490888..1492549 1 NC_017310.1 KEGG: dba:Dbac_1919 hybrid cluster protein; TIGRFAM: hybrid cluster protein; PFAM: Prismane; hybrid cluster protein 1492549 12867766 Deval_1304 Desulfovibrio vulgaris RCH1 hybrid cluster protein YP_005702101.1 1490888 D 573059 CDS YP_005702102.1 387153166 12867767 1492660..1492818 1 NC_017310.1 KEGG: sfu:Sfum_2932 cytochrome b subunit of nitric oxide reductase; hypothetical protein 1492818 12867767 Deval_1305 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702102.1 1492660 D 573059 CDS YP_005702103.1 387153167 12867768 1492987..1493253 1 NC_017310.1 PFAM: transposase IS3/IS911 family protein; KEGG: dba:Dbac_2193 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1493253 12867768 Deval_1306 Desulfovibrio vulgaris RCH1 transposase IS3/IS911 family protein YP_005702103.1 1492987 D 573059 CDS YP_005702104.1 387153168 12867769 1493274..1494098 1 NC_017310.1 KEGG: dba:Dbac_2192 integrase catalytic region; manually curated; PFAM: Integrase catalytic region; integrase catalytic subunit 1494098 12867769 Deval_1307 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005702104.1 1493274 D 573059 CDS YP_005702105.1 387153169 12867770 complement(1494079..1494462) 1 NC_017310.1 KEGG: dde:Dde_3439 hypothetical protein; hypothetical protein 1494462 12867770 Deval_1308 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702105.1 1494079 R 573059 CDS YP_005702106.1 387153170 12867771 1494823..1495239 1 NC_017310.1 KEGG: dol:Dole_2932 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease 1495239 12867771 Deval_1309 Desulfovibrio vulgaris RCH1 nuclease YP_005702106.1 1494823 D 573059 CDS YP_005702107.1 387153171 12867772 1495350..1495505 1 NC_017310.1 KEGG: dde:Dde_3728 hypothetical protein; hypothetical protein 1495505 12867772 Deval_1310 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702107.1 1495350 D 573059 CDS YP_005702108.1 387153172 12867774 complement(1495811..1496860) 1 NC_017310.1 PFAM: Integrase catalytic region; KEGG: glo:Glov_1005 integrase catalytic region; integrase catalytic subunit 1496860 12867774 Deval_1312 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005702108.1 1495811 R 573059 CDS YP_005702109.1 387153173 12867777 complement(1499178..1500365) 1 NC_017310.1 PFAM: integrase family protein; KEGG: dde:Dde_3398 phage integrase family site specific recombinase; integrase family protein 1500365 12867777 Deval_1315 Desulfovibrio vulgaris RCH1 integrase family protein YP_005702109.1 1499178 R 573059 CDS YP_005702110.1 387153174 12867778 complement(1500750..1501352) 1 NC_017310.1 KEGG: bta:539967 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae); hypothetical protein 1501352 12867778 Deval_1316 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702110.1 1500750 R 573059 CDS YP_005702111.1 387153175 12867779 complement(1501514..1503733) 1 NC_017310.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb3535 sulfate permease and related transporters; sulfate transporter 1503733 12867779 Deval_1317 Desulfovibrio vulgaris RCH1 sulfate transporter YP_005702111.1 1501514 R 573059 CDS YP_005702112.1 387153176 12867780 1504240..1505703 1 NC_017310.1 KEGG: swo:Swol_1997 putative anti-sigma regulatory factor, serine/threonine protein kinase; hypothetical protein 1505703 12867780 Deval_1318 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702112.1 1504240 D 573059 CDS YP_005702113.1 387153177 12867781 complement(1505705..1506034) 1 NC_017310.1 PFAM: small multidrug resistance protein; KEGG: pph:Ppha_1102 small multidrug resistance protein; small multidrug resistance protein 1506034 12867781 Deval_1319 Desulfovibrio vulgaris RCH1 small multidrug resistance protein YP_005702113.1 1505705 R 573059 CDS YP_005702114.1 387153178 12867782 complement(1506633..1506962) 1 NC_017310.1 KEGG: glo:Glov_0751 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 1506962 12867782 Deval_1320 Desulfovibrio vulgaris RCH1 anti-sigma-factor antagonist YP_005702114.1 1506633 R 573059 CDS YP_005702115.1 387153179 12867783 complement(1507036..1507278) 1 NC_017310.1 KEGG: swo:Swol_1793 serine phosphatase RsbU regulator of sigma subunit-like protein; serine phosphatase RsbU regulator of sigma subunit-like protein 1507278 12867783 Deval_1321 Desulfovibrio vulgaris RCH1 serine phosphatase RsbU regulator of sigma subunit-like protein YP_005702115.1 1507036 R 573059 CDS YP_005702116.1 387153180 12867784 1508255..1511008 1 NC_017310.1 KEGG: dba:Dbac_3243 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; P-type HAD superfamily ATPase 1511008 12867784 Deval_1322 Desulfovibrio vulgaris RCH1 P-type HAD superfamily ATPase YP_005702116.1 1508255 D 573059 CDS YP_005702117.1 387153181 12867785 1511152..1511796 1 NC_017310.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: maq:Maqu_1388 hexapaptide repeat-containing transferase; transferase hexapeptide repeat containing protein 1511796 12867785 Deval_1323 Desulfovibrio vulgaris RCH1 transferase hexapeptide repeat containing protein YP_005702117.1 1511152 D 573059 CDS YP_005702118.1 387153182 12867786 complement(1511999..1512994) 1 NC_017310.1 KEGG: sat:SYN_00464 putative cytoplasmic protein; putative cytoplasmic protein 1512994 12867786 Deval_1324 Desulfovibrio vulgaris RCH1 putative cytoplasmic protein YP_005702118.1 1511999 R 573059 CDS YP_005702119.1 387153183 12867788 complement(1513591..1514238) 1 NC_017310.1 KEGG: dds:Ddes_0600 hypothetical protein; hypothetical protein 1514238 12867788 Deval_1325 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702119.1 1513591 R 573059 CDS YP_005702120.1 387153184 12867789 1514415..1515101 1 NC_017310.1 PFAM: protein of unknown function DUF554; KEGG: dde:Dde_2488 hypothetical protein; hypothetical protein 1515101 12867789 Deval_1326 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702120.1 1514415 D 573059 CDS YP_005702121.1 387153185 12867790 1515149..1518079 1 NC_017310.1 KEGG: dde:Dde_2486 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; excinuclease ABC subunit A 1518079 12867790 Deval_1327 Desulfovibrio vulgaris RCH1 excinuclease ABC subunit A YP_005702121.1 1515149 D 573059 CDS YP_005702122.1 387153186 12867791 complement(1518258..1518689) 1 NC_017310.1 KEGG: tau:Tola_1997 hypothetical protein; hypothetical protein 1518689 12867791 Deval_1328 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702122.1 1518258 R 573059 CDS YP_005702123.1 387153187 12867792 1519090..1520346 1 NC_017310.1 KEGG: dde:Dde_2484 hypothetical protein; hypothetical protein 1520346 12867792 Deval_1329 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702123.1 1519090 D 573059 CDS YP_005702124.1 387153188 12867793 complement(1520456..1521082) 1 NC_017310.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: csa:Csal_1295 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1521082 12867793 Deval_1330 Desulfovibrio vulgaris RCH1 peptide methionine sulfoxide reductase YP_005702124.1 1520456 R 573059 CDS YP_005702125.1 387153189 12867794 complement(1521210..1522433) 1 NC_017310.1 PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_2481 hypothetical protein; aminoglycoside phosphotransferase 1522433 12867794 Deval_1331 Desulfovibrio vulgaris RCH1 aminoglycoside phosphotransferase YP_005702125.1 1521210 R 573059 CDS YP_005702126.1 387153190 12867795 1522951..1524339 1 NC_017310.1 KEGG: gme:Gmet_2573 ATP-dependent RNA helicase RhlE; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 1524339 12867795 Deval_1332 Desulfovibrio vulgaris RCH1 DEAD/DEAH box helicase YP_005702126.1 1522951 D 573059 CDS YP_005702127.1 387153191 12867796 1524704..1525195 1 NC_017310.1 PFAM: protein of unknown function DUF520; KEGG: dde:Dde_2479 putative nucleotide-binding protein; hypothetical protein 1525195 12867796 Deval_1333 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702127.1 1524704 D 573059 CDS YP_005702128.1 387153192 12867797 complement(1525673..1526065) 1 NC_017310.1 KEGG: dde:Dde_2478 hypothetical protein; hypothetical protein 1526065 12867797 Deval_1334 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702128.1 1525673 R 573059 CDS YP_005702129.1 387153193 12867798 1526221..1528146 1 NC_017310.1 KEGG: dde:Dde_2477 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1528146 12867798 Deval_1335 Desulfovibrio vulgaris RCH1 ABC transporter YP_005702129.1 1526221 D 573059 CDS YP_005702130.1 387153194 12867799 1528683..1530005 1 NC_017310.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: dsa:Desal_2013 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC-like protein 1530005 12867799 Deval_1336 Desulfovibrio vulgaris RCH1 Na+/H+ antiporter NhaC-like protein YP_005702130.1 1528683 D 573059 CDS YP_005702131.1 387153195 12867800 1530290..1530577 1 NC_017310.1 PFAM: Chaperonin Cpn10; KEGG: dde:Dde_2474 co-chaperonin GroES; chaperonin Cpn10 1530577 12867800 Deval_1337 Desulfovibrio vulgaris RCH1 chaperonin Cpn10 YP_005702131.1 1530290 D 573059 CDS YP_005702132.1 387153196 12867801 1530617..1532260 1 NC_017310.1 KEGG: lip:LI0625 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; chaperonin GroEL 1532260 12867801 Deval_1338 Desulfovibrio vulgaris RCH1 chaperonin GroEL YP_005702132.1 1530617 D 573059 CDS YP_005702133.1 387153197 12867802 1532455..1534203 1 NC_017310.1 KEGG: dma:DMR_46100 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1534203 12867802 Deval_1339 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005702133.1 1532455 D 573059 CDS YP_005702134.1 387153198 12867803 complement(1534275..1535378) 1 NC_017310.1 KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase; TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase family protein 1535378 12867803 Deval_1340 Desulfovibrio vulgaris RCH1 pyridine nucleotide-disulfide oxidoreductase family protein YP_005702134.1 1534275 R 573059 CDS YP_005702135.1 387153199 12867804 complement(1535371..1536219) 1 NC_017310.1 KEGG: dde:Dde_2561 rhodanese-like protein; PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 1536219 12867804 Deval_1341 Desulfovibrio vulgaris RCH1 Rhodanese domain-containing protein YP_005702135.1 1535371 R 573059 CDS YP_005702136.1 387153200 12867805 1536626..1537324 1 NC_017310.1 KEGG: dde:Dde_0220 Sel1 repeat-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 1537324 12867805 Deval_1342 Desulfovibrio vulgaris RCH1 Sel1 domain-containing protein repeat-containing protein YP_005702136.1 1536626 D 573059 CDS YP_005702137.1 387153201 12867806 1537567..1537716 1 NC_017310.1 KEGG: mho:MHO_0860 acyl carrier protein phosphodiesterase; hypothetical protein 1537716 12867806 Deval_1343 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702137.1 1537567 D 573059 CDS YP_005702138.1 387153202 12867807 complement(1537789..1538196) 1 NC_017310.1 manually curated; PFAM: response regulator receiver; KEGG: dde:Dde_0221 response regulator receiver domain-containing protein; SMART: response regulator receiver; response regulator receiver protein 1538196 12867807 Deval_1344 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005702138.1 1537789 R 573059 CDS YP_005702139.1 387153203 12867808 complement(1538205..1538900) 1 NC_017310.1 PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein; hypothetical protein 1538900 12867808 Deval_1345 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702139.1 1538205 R 573059 CDS YP_005702140.1 387153204 12867809 complement(1538914..1540155) 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1540155 12867809 Deval_1346 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005702140.1 1538914 R 573059 CDS YP_005702141.1 387153205 12867810 complement(1540171..1540692) 1 NC_017310.1 KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator 1540692 12867810 Deval_1347 Desulfovibrio vulgaris RCH1 AsnC family transcriptional regulator YP_005702141.1 1540171 R 573059 CDS YP_005702142.1 387153206 12867811 1541298..1541810 1 NC_017310.1 KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; AsnC family transcriptional regulator 1541810 12867811 Deval_1348 Desulfovibrio vulgaris RCH1 AsnC family transcriptional regulator YP_005702142.1 1541298 D 573059 CDS YP_005702143.1 387153207 12867812 complement(1541787..1542038) 1 NC_017310.1 KEGG: sco:SCO5011 integral membrane protein; hypothetical protein 1542038 12867812 Deval_1349 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702143.1 1541787 R 573059 CDS YP_005702144.1 387153208 12867813 1542505..1544667 1 NC_017310.1 KEGG: dde:Dde_1627 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 1544667 12867813 Deval_1350 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005702144.1 1542505 D 573059 CDS YP_005702145.1 387153209 12867814 1544676..1545179 1 NC_017310.1 KEGG: dma:DMR_19080 chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein 1545179 12867814 Deval_1351 Desulfovibrio vulgaris RCH1 CheW protein YP_005702145.1 1544676 D 573059 CDS YP_005702146.1 387153210 12867815 1545184..1547277 1 NC_017310.1 KEGG: dma:DMR_19060 chemotaxis protein CheA; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein; CheA signal transduction histidine kinase 1547277 12867815 Deval_1352 Desulfovibrio vulgaris RCH1 CheA signal transduction histidine kinase YP_005702146.1 1545184 D 573059 CDS YP_005702147.1 387153211 12867816 complement(1547499..1549892) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 1549892 12867816 Deval_1353 Desulfovibrio vulgaris RCH1 diguanylate cyclase/phosphodiesterase YP_005702147.1 1547499 R 573059 CDS YP_005702148.1 387153212 12867817 complement(1550216..1552888) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase 1552888 12867817 Deval_1354 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005702148.1 1550216 R 573059 CDS YP_005702149.1 387153213 12867818 1552969..1554030 1 NC_017310.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1629 heptosyltransferase family protein; glycosyl transferase family protein 1554030 12867818 Deval_1355 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005702149.1 1552969 D 573059 CDS YP_005702150.1 387153214 12867819 complement(1554172..1555005) 1 NC_017310.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_1630 TPR repeat-containing protein; hypothetical protein 1555005 12867819 Deval_1356 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702150.1 1554172 R 573059 CDS YP_005702151.1 387153215 12867820 complement(1555002..1555706) 1 NC_017310.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dds:Ddes_0440 cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 1555706 12867820 Deval_1357 Desulfovibrio vulgaris RCH1 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_005702151.1 1555002 R 573059 CDS YP_005702152.1 387153216 12867821 complement(1555732..1556991) 1 NC_017310.1 KEGG: dde:Dde_1633 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase 1556991 12867821 Deval_1358 Desulfovibrio vulgaris RCH1 gamma-glutamyl phosphate reductase YP_005702152.1 1555732 R 573059 CDS YP_005702153.1 387153217 12867822 1557352..1558047 1 NC_017310.1 KEGG: dde:Dde_1634 hypothetical protein; hypothetical protein 1558047 12867822 Deval_1359 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702153.1 1557352 D 573059 CDS YP_005702154.1 387153218 12867823 1558096..1559946 1 NC_017310.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; KEGG: dds:Ddes_0443 indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; indolepyruvate ferredoxin oxidoreductase subunit alpha 1559946 12867823 Deval_1360 Desulfovibrio vulgaris RCH1 indolepyruvate ferredoxin oxidoreductase subunit alpha YP_005702154.1 1558096 D 573059 CDS YP_005702155.1 387153219 12867824 1559946..1560542 1 NC_017310.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dds:Ddes_0444 indolepyruvate ferredoxin oxidoreductase; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein 1560542 12867824 Deval_1361 Desulfovibrio vulgaris RCH1 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein YP_005702155.1 1559946 D 573059 CDS YP_005702156.1 387153220 12867825 1560546..1562135 1 NC_017310.1 KEGG: dde:Dde_1635 Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; GAF domain protein; Fis family NifA subfamily transcriptional regulator 1562135 12867825 Deval_1362 Desulfovibrio vulgaris RCH1 Fis family NifA subfamily transcriptional regulator YP_005702156.1 1560546 D 573059 CDS YP_005702157.1 387153221 12867826 complement(1562400..1562690) 1 NC_017310.1 KEGG: dde:Dde_1636 hypothetical protein; hypothetical protein 1562690 12867826 Deval_1363 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702157.1 1562400 R 573059 CDS YP_005702158.1 387153222 12867827 complement(1562701..1563324) 1 NC_017310.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_1637 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein 1563324 12867827 Deval_1364 Desulfovibrio vulgaris RCH1 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein YP_005702158.1 1562701 R 573059 CDS YP_005702159.1 387153223 12867828 complement(1563321..1564151) 1 NC_017310.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dde:Dde_1638 2-oxoglutarate ferredoxin oxidoreductase subunit beta; thiamine pyrophosphate TPP-binding domain-containing protein 1564151 12867828 Deval_1365 Desulfovibrio vulgaris RCH1 thiamine pyrophosphate TPP-binding domain-containing protein YP_005702159.1 1563321 R 573059 CDS YP_005702160.1 387153224 12867829 complement(1564159..1565307) 1 NC_017310.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1639 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1565307 12867829 Deval_1366 Desulfovibrio vulgaris RCH1 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_005702160.1 1564159 R 573059 CDS YP_005702161.1 387153225 12867830 complement(1565309..1565581) 1 NC_017310.1 KEGG: drt:Dret_1403 4Fe-4S ferredoxin iron-sulfur binding domain protein; hypothetical protein 1565581 12867830 Deval_1367 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702161.1 1565309 R 573059 CDS YP_005702162.1 387153226 12867831 complement(1565854..1566087) 1 NC_017310.1 KEGG: dde:Dde_1642 hypothetical protein; hypothetical protein 1566087 12867831 Deval_1368 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702162.1 1565854 R 573059 CDS YP_005702163.1 387153227 12867832 complement(1566174..1568087) 1 NC_017310.1 KEGG: dde:Dde_1644 DegV family protein; TIGRFAM: degV family protein; PFAM: Dak phosphatase; DegV family protein; degV family protein 1568087 12867832 Deval_1369 Desulfovibrio vulgaris RCH1 degV family protein YP_005702163.1 1566174 R 573059 CDS YP_005702164.1 387153228 12867833 1568352..1569119 1 NC_017310.1 KEGG: dde:Dde_3732 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1569119 12867833 Deval_1370 Desulfovibrio vulgaris RCH1 HAD-superfamily hydrolase YP_005702164.1 1568352 D 573059 CDS YP_005702165.1 387153229 12867834 1569155..1570705 1 NC_017310.1 TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; KEGG: dba:Dbac_1438 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 1570705 12867834 Deval_1371 Desulfovibrio vulgaris RCH1 glycerol-3-phosphate dehydrogenase YP_005702165.1 1569155 D 573059 CDS YP_005702166.1 387153230 12867835 1570714..1571997 1 NC_017310.1 TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; KEGG: drt:Dret_2101 glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; glycerol-3-phosphate dehydrogenase 1571997 12867835 Deval_1372 Desulfovibrio vulgaris RCH1 glycerol-3-phosphate dehydrogenase YP_005702166.1 1570714 D 573059 CDS YP_005702167.1 387153231 12867836 1572600..1573613 1 NC_017310.1 KEGG: dde:Dde_3730 phosphonate-binding periplasmic protein; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; phosphonate ABC transporter periplasmic phosphonate-binding protein 1573613 12867836 Deval_1373 Desulfovibrio vulgaris RCH1 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_005702167.1 1572600 D 573059 CDS YP_005702168.1 387153232 12867837 1573690..1574487 1 NC_017310.1 TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dba:Dbac_0857 phosphonate ABC transporter, ATPase subunit; SMART: AAA ATPase; phosphonate ABC transporter ATP-binding protein 1574487 12867837 Deval_1374 Desulfovibrio vulgaris RCH1 phosphonate ABC transporter ATP-binding protein YP_005702168.1 1573690 D 573059 CDS YP_005702169.1 387153233 12867838 1574484..1575272 1 NC_017310.1 KEGG: dde:Dde_3725 phosphonate ABC transporter inner membrane protein; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane protein 1575272 12867838 Deval_1375 Desulfovibrio vulgaris RCH1 phosphonate ABC transporter inner membrane protein YP_005702169.1 1574484 D 573059 CDS YP_005702170.1 387153234 12867839 1575269..1576069 1 NC_017310.1 KEGG: dde:Dde_3724 phosphonate ABC transporter permease; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane protein 1576069 12867839 Deval_1376 Desulfovibrio vulgaris RCH1 phosphonate ABC transporter inner membrane protein YP_005702170.1 1575269 D 573059 CDS YP_005702171.1 387153235 12867840 1576162..1576683 1 NC_017310.1 KEGG: dba:Dbac_0225 intracellular protease, PfpI family; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein; Pfpi family intracellular protease 1576683 12867840 Deval_1377 Desulfovibrio vulgaris RCH1 Pfpi family intracellular protease YP_005702171.1 1576162 D 573059 CDS YP_005702172.1 387153236 12867841 complement(1577204..1577875) 1 NC_017310.1 PFAM: adenylate kinase; KEGG: dde:Dde_2028 adenylate kinase; adenylate kinase 1577875 12867841 Deval_1378 Desulfovibrio vulgaris RCH1 adenylate kinase YP_005702172.1 1577204 R 573059 CDS YP_005702173.1 387153237 12867842 complement(1578359..1578802) 1 NC_017310.1 PFAM: NIL domain; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein; NIL domain-containing protein 1578802 12867842 Deval_1379 Desulfovibrio vulgaris RCH1 NIL domain-containing protein YP_005702173.1 1578359 R 573059 CDS YP_005702174.1 387153238 12867843 complement(1578828..1579766) 1 NC_017310.1 TIGRFAM: tol-pal system protein YbgF; KEGG: lip:LI1053 hypothetical protein; tol-pal system protein YbgF 1579766 12867843 Deval_1380 Desulfovibrio vulgaris RCH1 tol-pal system protein YbgF YP_005702174.1 1578828 R 573059 CDS YP_005702175.1 387153239 12867844 complement(1579801..1579998) 1 NC_017310.1 KEGG: dba:Dbac_0485 hypothetical protein; hypothetical protein 1579998 12867844 Deval_1381 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702175.1 1579801 R 573059 CDS YP_005702176.1 387153240 12867845 complement(1580001..1580498) 1 NC_017310.1 TIGRFAM: lipoprotein signal peptidase; KEGG: dds:Ddes_0386 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 1580498 12867845 Deval_1382 Desulfovibrio vulgaris RCH1 lipoprotein signal peptidase YP_005702176.1 1580001 R 573059 CDS YP_005702177.1 387153241 12867846 complement(1580562..1583378) 1 NC_017310.1 KEGG: dde:Dde_2142 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 1583378 12867846 Deval_1383 Desulfovibrio vulgaris RCH1 isoleucyl-tRNA synthetase YP_005702177.1 1580562 R 573059 CDS YP_005702178.1 387153242 12867847 complement(1583612..1584100) 1 NC_017310.1 KEGG: rxy:Rxyl_1674 hypothetical protein; manually curated; PFAM: AIG2 family protein; AIG2 family protein 1584100 12867847 Deval_1384 Desulfovibrio vulgaris RCH1 AIG2 family protein YP_005702178.1 1583612 R 573059 CDS YP_005702179.1 387153243 12867848 complement(1584082..1584723) 1 NC_017310.1 PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase; G-D-S-L family lipolytic protein 1584723 12867848 Deval_1385 Desulfovibrio vulgaris RCH1 G-D-S-L family lipolytic protein YP_005702179.1 1584082 R 573059 CDS YP_005702180.1 387153244 12867849 complement(1584741..1584992) 1 NC_017310.1 KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone HypC/HupF 1584992 12867849 Deval_1386 Desulfovibrio vulgaris RCH1 hydrogenase assembly chaperone HypC/HupF YP_005702180.1 1584741 R 573059 CDS YP_005702181.1 387153245 12867850 complement(1585004..1585621) 1 NC_017310.1 KEGG: dde:Dde_2139 hydrogenase expression/formation protein; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; hydrogenase expression/formation protein 1585621 12867850 Deval_1387 Desulfovibrio vulgaris RCH1 hydrogenase expression/formation protein YP_005702181.1 1585004 R 573059 CDS YP_005702182.1 387153246 12867851 complement(1585870..1587570) 1 NC_017310.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1; nickel-dependent hydrogenase large subunit 1587570 12867851 Deval_1388 Desulfovibrio vulgaris RCH1 nickel-dependent hydrogenase large subunit YP_005702182.1 1585870 R 573059 CDS YP_005702183.1 387153247 12867852 complement(1587622..1588575) 1 NC_017310.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 1588575 12867852 Deval_1389 Desulfovibrio vulgaris RCH1 hydrogenase (NiFe) small subunit HydA YP_005702183.1 1587622 R 573059 CDS YP_005702184.1 387153248 12867853 complement(1588893..1589363) 1 NC_017310.1 KEGG: dde:Dde_2136 peptidase M52, hydrogen uptake protein; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; hydrogenase maturation protease 1589363 12867853 Deval_1390 Desulfovibrio vulgaris RCH1 hydrogenase maturation protease YP_005702184.1 1588893 R 573059 CDS YP_005702185.1 387153249 12867854 complement(1589632..1591164) 1 NC_017310.1 KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing; manually curated; PFAM: nickel-dependent hydrogenase large subunit; Contains selenocysteine; nickel-dependent hydrogenase large subunit 1591164 12867854 Deval_1391 Desulfovibrio vulgaris RCH1 nickel-dependent hydrogenase large subunit YP_005702185.1 1589632 R 573059 CDS YP_005702186.1 387153250 12867855 complement(1591198..1592151) 1 NC_017310.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_2134 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 1592151 12867855 Deval_1392 Desulfovibrio vulgaris RCH1 hydrogenase (NiFe) small subunit HydA YP_005702186.1 1591198 R 573059 CDS YP_005702187.1 387153251 12867856 complement(1592671..1594287) 1 NC_017310.1 KEGG: dde:Dde_2049 putative alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase 1594287 12867856 Deval_1393 Desulfovibrio vulgaris RCH1 2-isopropylmalate synthase YP_005702187.1 1592671 R 573059 CDS YP_005702188.1 387153252 12867857 complement(1594302..1595528) 1 NC_017310.1 KEGG: dde:Dde_2048 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 1595528 12867857 Deval_1394 Desulfovibrio vulgaris RCH1 aspartate kinase YP_005702188.1 1594302 R 573059 CDS YP_005702189.1 387153253 12867858 complement(1595587..1596075) 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: dde:Dde_2047 hypothetical protein; hypothetical protein 1596075 12867858 Deval_1395 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702189.1 1595587 R 573059 CDS YP_005702190.1 387153254 12867859 complement(1596088..1596540) 1 NC_017310.1 KEGG: dde:Dde_2046 CBS; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; hypothetical protein 1596540 12867859 Deval_1396 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702190.1 1596088 R 573059 CDS YP_005702191.1 387153255 12867860 complement(1596533..1598257) 1 NC_017310.1 KEGG: dde:Dde_2045 hypothetical protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain-containing protein; protein of unknown function UPF0031; carbohydrate kinase 1598257 12867860 Deval_1397 Desulfovibrio vulgaris RCH1 carbohydrate kinase YP_005702191.1 1596533 R 573059 CDS YP_005702192.1 387153256 12867861 complement(1598379..1598753) 1 NC_017310.1 KEGG: dsa:Desal_1993 holo-acyl-carrier-protein synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase 1598753 12867861 Deval_1398 Desulfovibrio vulgaris RCH1 holo-(acyl-carrier-protein) synthase YP_005702192.1 1598379 R 573059 CDS YP_005702193.1 387153257 12867862 complement(1598764..1599489) 1 NC_017310.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: dde:Dde_2043 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 1599489 12867862 Deval_1399 Desulfovibrio vulgaris RCH1 pyridoxal phosphate biosynthetic protein PdxJ YP_005702193.1 1598764 R 573059 CDS YP_005702194.1 387153258 12867863 1599641..1600978 1 NC_017310.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1600978 12867863 Deval_1400 Desulfovibrio vulgaris RCH1 nucleotide sugar dehydrogenase YP_005702194.1 1599641 D 573059 CDS YP_005702195.1 387153259 12867864 complement(1601353..1601577) 1 NC_017310.1 KEGG: dde:Dde_2041 hypothetical protein; hypothetical protein 1601577 12867864 Deval_1401 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702195.1 1601353 R 573059 CDS YP_005702196.1 387153260 12867865 1601802..1602278 1 NC_017310.1 KEGG: dde:Dde_2040 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein 1602278 12867865 Deval_1402 Desulfovibrio vulgaris RCH1 CheW protein YP_005702196.1 1601802 D 573059 CDS YP_005702197.1 387153261 12867866 1602360..1605839 1 NC_017310.1 TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: dde:Dde_2039 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor 1605839 12867866 Deval_1403 Desulfovibrio vulgaris RCH1 transcription-repair coupling factor YP_005702197.1 1602360 D 573059 CDS YP_005702198.1 387153262 12867867 1605850..1606836 1 NC_017310.1 PFAM: SurA domain; KEGG: dde:Dde_2038 hypothetical protein; SurA domain-containing protein 1606836 12867867 Deval_1404 Desulfovibrio vulgaris RCH1 SurA domain-containing protein YP_005702198.1 1605850 D 573059 CDS YP_005702199.1 387153263 12867868 1606811..1607920 1 NC_017310.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dds:Ddes_0912 SurA domain protein; SurA domain-containing protein 1607920 12867868 Deval_1405 Desulfovibrio vulgaris RCH1 SurA domain-containing protein YP_005702199.1 1606811 D 573059 CDS YP_005702200.1 387153264 12867869 1608017..1608958 1 NC_017310.1 KEGG: dds:Ddes_0913 hypothetical protein; hypothetical protein 1608958 12867869 Deval_1406 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702200.1 1608017 D 573059 CDS YP_005702201.1 387153265 12867870 1608961..1609716 1 NC_017310.1 KEGG: dde:Dde_2035 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; DNA repair protein RecO 1609716 12867870 Deval_1407 Desulfovibrio vulgaris RCH1 DNA repair protein RecO YP_005702201.1 1608961 D 573059 CDS YP_005702202.1 387153266 12867871 1609766..1610635 1 NC_017310.1 TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: dde:Dde_2034 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha 1610635 12867871 Deval_1408 Desulfovibrio vulgaris RCH1 glycyl-tRNA synthetase subunit alpha YP_005702202.1 1609766 D 573059 CDS YP_005702203.1 387153267 12867872 1610653..1612743 1 NC_017310.1 TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: dde:Dde_2033 glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 1612743 12867872 Deval_1409 Desulfovibrio vulgaris RCH1 glycyl-tRNA synthetase subunit beta YP_005702203.1 1610653 D 573059 CDS YP_005702204.1 387153268 12867873 1612859..1613122 1 NC_017310.1 KEGG: dde:Dde_2031 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; 30S ribosomal protein S20 1613122 12867873 Deval_1410 Desulfovibrio vulgaris RCH1 30S ribosomal protein S20 YP_005702204.1 1612859 D 573059 CDS YP_005702205.1 387153269 12867874 complement(1613688..1614854) 1 NC_017310.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein; major facilitator superfamily protein 1614854 12867874 Deval_1411 Desulfovibrio vulgaris RCH1 major facilitator superfamily protein YP_005702205.1 1613688 R 573059 CDS YP_005702206.1 387153270 12867875 1615086..1615280 1 NC_017310.1 KEGG: ame:408754 similar to TNF-receptor-associated factor 1 CG3048-PA, isoform A; hypothetical protein 1615280 12867875 Deval_1412 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702206.1 1615086 D 573059 CDS YP_005702207.1 387153271 12867876 complement(1615491..1617911) 1 NC_017310.1 KEGG: dde:Dde_2626 ATP-dependent protease, putative; ATP-dependent protease 1617911 12867876 Deval_1413 Desulfovibrio vulgaris RCH1 ATP-dependent protease YP_005702207.1 1615491 R 573059 CDS YP_005702208.1 387153272 12867877 1618039..1618788 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 1618788 12867877 Deval_1414 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005702208.1 1618039 D 573059 CDS YP_005702209.1 387153273 12867878 1618785..1619519 1 NC_017310.1 PFAM: Protein of unknown function DUF2064; KEGG: dde:Dde_2624 hypothetical protein; hypothetical protein 1619519 12867878 Deval_1415 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702209.1 1618785 D 573059 CDS YP_005702210.1 387153274 12867879 complement(1619862..1620809) 1 NC_017310.1 KEGG: dde:Dde_2621 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 1620809 12867879 Deval_1416 Desulfovibrio vulgaris RCH1 porphobilinogen deaminase YP_005702210.1 1619862 R 573059 CDS YP_005702211.1 387153275 12867880 complement(1620846..1621070) 1 NC_017310.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dds:Ddes_1286 regulatory protein, FmdB family; SMART: Putative regulatory protein FmdB; FmdB family regulatory protein 1621070 12867880 Deval_1417 Desulfovibrio vulgaris RCH1 FmdB family regulatory protein YP_005702211.1 1620846 R 573059 CDS YP_005702212.1 387153276 12867881 complement(1621124..1621750) 1 NC_017310.1 KEGG: dde:Dde_2619 phosphoheptose isomerase; phosphoheptose isomerase 1621750 12867881 Deval_1418 Desulfovibrio vulgaris RCH1 phosphoheptose isomerase YP_005702212.1 1621124 R 573059 CDS YP_005702213.1 387153277 12867882 1621886..1622785 1 NC_017310.1 PFAM: ATP-NAD/AcoX kinase; KEGG: dde:Dde_2618 NAD(+) kinase; ATP-NAD/AcoX kinase 1622785 12867882 Deval_1419 Desulfovibrio vulgaris RCH1 ATP-NAD/AcoX kinase YP_005702213.1 1621886 D 573059 CDS YP_005702214.1 387153278 12867883 1622867..1624609 1 NC_017310.1 KEGG: dde:Dde_2617 hypothetical protein; hypothetical protein 1624609 12867883 Deval_1420 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702214.1 1622867 D 573059 CDS YP_005702215.1 387153279 12867884 1624631..1625308 1 NC_017310.1 KEGG: dde:Dde_2616 hypothetical protein; hypothetical protein 1625308 12867884 Deval_1421 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702215.1 1624631 D 573059 CDS YP_005702216.1 387153280 12867885 1625311..1626741 1 NC_017310.1 KEGG: dde:Dde_2615 aspartyl/glutamyl-tRNA amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; glutamyl-tRNA(Gln) amidotransferase subunit B 1626741 12867885 Deval_1422 Desulfovibrio vulgaris RCH1 glutamyl-tRNA(Gln) amidotransferase subunit B YP_005702216.1 1625311 D 573059 CDS YP_005702217.1 387153281 12867886 1627066..1629468 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: dde:Dde_1650 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1629468 12867886 Deval_1423 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_005702217.1 1627066 D 573059 CDS YP_005702218.1 387153282 12867887 complement(1629695..1630183) 1 NC_017310.1 PFAM: protein of unknown function UPF0054; KEGG: dsa:Desal_1783 protein of unknown function UPF0054; hypothetical protein 1630183 12867887 Deval_1424 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702218.1 1629695 R 573059 CDS YP_005702219.1 387153283 12867888 complement(1630180..1632663) 1 NC_017310.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; KEGG: dde:Dde_1652 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; cyclic nucleotide-binding protein 1632663 12867888 Deval_1425 Desulfovibrio vulgaris RCH1 cyclic nucleotide-binding protein YP_005702219.1 1630180 R 573059 CDS YP_005702220.1 387153284 12867889 complement(1632635..1633636) 1 NC_017310.1 PFAM: PhoH family protein; KEGG: dde:Dde_1653 PhoH family protein; PhoH family protein 1633636 12867889 Deval_1426 Desulfovibrio vulgaris RCH1 PhoH family protein YP_005702220.1 1632635 R 573059 CDS YP_005702221.1 387153285 12867890 1633813..1634454 1 NC_017310.1 KEGG: dde:Dde_1654 hypothetical protein; hypothetical protein 1634454 12867890 Deval_1427 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702221.1 1633813 D 573059 CDS YP_005702222.1 387153286 12867891 1634780..1635949 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1635949 12867891 Deval_1428 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005702222.1 1634780 D 573059 CDS YP_005702223.1 387153287 12867892 1635961..1636983 1 NC_017310.1 KEGG: aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; threonine aldolase 1636983 12867892 Deval_1429 Desulfovibrio vulgaris RCH1 threonine aldolase YP_005702223.1 1635961 D 573059 CDS YP_005702224.1 387153288 12867893 complement(1637182..1638282) 1 NC_017310.1 PFAM: polysaccharide deacetylase; KEGG: dde:Dde_1658 polysaccharide deacetylase family protein; polysaccharide deacetylase 1638282 12867893 Deval_1430 Desulfovibrio vulgaris RCH1 polysaccharide deacetylase YP_005702224.1 1637182 R 573059 CDS YP_005702225.1 387153289 12867894 1638425..1639375 1 NC_017310.1 KEGG: dde:Dde_1659 heat shock protein DnaJ-like; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone DnaJ domain-containing protein 1639375 12867894 Deval_1431 Desulfovibrio vulgaris RCH1 chaperone DnaJ domain-containing protein YP_005702225.1 1638425 D 573059 CDS YP_005702226.1 387153290 12867895 1639408..1639725 1 NC_017310.1 KEGG: dde:Dde_1660 DafA protein; DafA protein 1639725 12867895 Deval_1432 Desulfovibrio vulgaris RCH1 DafA protein YP_005702226.1 1639408 D 573059 CDS YP_005702227.1 387153291 12867896 1639750..1642347 1 NC_017310.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: dde:Dde_1661 ATPase; SMART: AAA ATPase; ATP-dependent chaperone ClpB 1642347 12867896 Deval_1433 Desulfovibrio vulgaris RCH1 ATP-dependent chaperone ClpB YP_005702227.1 1639750 D 573059 CDS YP_005702228.1 387153292 12867897 1642557..1643144 1 NC_017310.1 KEGG: bav:BAV2564 peptidyl-prolyl cis-trans isomerase B; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; Peptidylprolyl isomerase 1643144 12867897 Deval_1434 Desulfovibrio vulgaris RCH1 Peptidylprolyl isomerase YP_005702228.1 1642557 D 573059 CDS YP_005702229.1 387153293 12867898 1643660..1645066 1 NC_017310.1 KEGG: dde:Dde_1663 aspartate ammonia-lyase; TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like; aspartate ammonia-lyase 1645066 12867898 Deval_1435 Desulfovibrio vulgaris RCH1 aspartate ammonia-lyase YP_005702229.1 1643660 D 573059 CDS YP_005702230.1 387153294 12867899 1645121..1645216 1 NC_017310.1 hypothetical protein 1645216 12867899 Deval_1436 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702230.1 1645121 D 573059 CDS YP_005702231.1 387153295 12867900 1645231..1646118 1 NC_017310.1 PFAM: cyclase family protein; KEGG: dde:Dde_1664 cyclase, putative; cyclase family protein 1646118 12867900 Deval_1437 Desulfovibrio vulgaris RCH1 cyclase family protein YP_005702231.1 1645231 D 573059 CDS YP_005702232.1 387153296 12867901 complement(1646228..1648543) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 1648543 12867901 Deval_1438 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005702232.1 1646228 R 573059 CDS YP_005702233.1 387153297 12867902 complement(1648916..1649794) 1 NC_017310.1 KEGG: dde:Dde_1797 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 1649794 12867902 Deval_1439 Desulfovibrio vulgaris RCH1 dihydrodipicolinate synthase YP_005702233.1 1648916 R 573059 CDS YP_005702234.1 387153298 12867903 complement(1649850..1650698) 1 NC_017310.1 KEGG: dde:Dde_1798 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase 1650698 12867903 Deval_1440 Desulfovibrio vulgaris RCH1 diaminopimelate epimerase YP_005702234.1 1649850 R 573059 CDS YP_005702235.1 387153299 12867904 complement(1650724..1651425) 1 NC_017310.1 KEGG: dma:DMR_26140 hypothetical protein; hypothetical protein 1651425 12867904 Deval_1441 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702235.1 1650724 R 573059 CDS YP_005702236.1 387153300 12867905 complement(1651477..1651617) 1 NC_017310.1 KEGG: dma:DMR_26140 hypothetical protein; hypothetical protein 1651617 12867905 Deval_1442 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702236.1 1651477 R 573059 CDS YP_005702237.1 387153301 12867906 complement(1651604..1651885) 1 NC_017310.1 KEGG: dde:Dde_1799 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1651885 12867906 Deval_1443 Desulfovibrio vulgaris RCH1 histone family protein DNA-binding protein YP_005702237.1 1651604 R 573059 CDS YP_005702238.1 387153302 12867907 complement(1651960..1652778) 1 NC_017310.1 KEGG: dde:Dde_1800 flagellar synthesis regulator FleN, putative; flagellar synthesis regulator FleN 1652778 12867907 Deval_1444 Desulfovibrio vulgaris RCH1 flagellar synthesis regulator FleN YP_005702238.1 1651960 R 573059 CDS YP_005702239.1 387153303 12867908 complement(1652775..1653770) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dsa:Desal_1592 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1653770 12867908 Deval_1445 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005702239.1 1652775 R 573059 CDS YP_005702240.1 387153304 12867909 complement(join(1653751..1654791,1654793..1654867)) 1 NC_017310.1 manually curated; manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein 1654867 12867909 Deval_1446 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702240.1 1653751 R 573059 CDS YP_005702241.1 387153305 12867910 complement(1654891..1656399) 1 NC_017310.1 KEGG: dma:DMR_26090 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 1656399 12867910 Deval_1447 Desulfovibrio vulgaris RCH1 apolipoprotein N-acyltransferase YP_005702241.1 1654891 R 573059 CDS YP_005702242.1 387153306 12867911 1656865..1657401 1 NC_017310.1 manually curated; PFAM: Excalibur domain protein; Cold-shock protein DNA-binding; KEGG: eba:ebA2865 cold shock family protein; SMART: Cold shock protein; excalibur domain-containing protein 1657401 12867911 Deval_1448 Desulfovibrio vulgaris RCH1 excalibur domain-containing protein YP_005702242.1 1656865 D 573059 CDS YP_005702243.1 387153307 12867912 1657656..1659743 1 NC_017310.1 KEGG: dsa:Desal_2891 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 1659743 12867912 Deval_1449 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005702243.1 1657656 D 573059 CDS YP_005702244.1 387153308 12867915 complement(1661077..1661685) 1 NC_017310.1 KEGG: dde:Dde_1940 hypothetical protein; hypothetical protein 1661685 12867915 Deval_1451 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702244.1 1661077 R 573059 CDS YP_005702245.1 387153309 12867916 1661846..1662142 1 NC_017310.1 KEGG: cfa:489443 smoothelin-like 2; hypothetical protein 1662142 12867916 Deval_1452 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702245.1 1661846 D 573059 CDS YP_005702246.1 387153310 12867917 complement(1662324..1662935) 1 NC_017310.1 KEGG: sbp:Sbal223_0115 protein of unknown function DUF1311; hypothetical protein 1662935 12867917 Deval_1453 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702246.1 1662324 R 573059 CDS YP_005702247.1 387153311 12867918 complement(1663090..1664412) 1 NC_017310.1 PFAM: Peptidase M23; KEGG: dde:Dde_2079 M24/M37 family peptidase; peptidase M23 1664412 12867918 Deval_1454 Desulfovibrio vulgaris RCH1 peptidase M23 YP_005702247.1 1663090 R 573059 CDS YP_005702248.1 387153312 12867919 complement(1664493..1664921) 1 NC_017310.1 KEGG: dde:Dde_2078 CBS; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; hypothetical protein 1664921 12867919 Deval_1455 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702248.1 1664493 R 573059 CDS YP_005702249.1 387153313 12867920 1665116..1665778 1 NC_017310.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: dde:Dde_2077 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1665778 12867920 Deval_1456 Desulfovibrio vulgaris RCH1 protein-L-isoaspartate O-methyltransferase YP_005702249.1 1665116 D 573059 CDS YP_005702250.1 387153314 12867921 1665782..1666375 1 NC_017310.1 KEGG: dde:Dde_2076 hypothetical protein; hypothetical protein 1666375 12867921 Deval_1457 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702250.1 1665782 D 573059 CDS YP_005702251.1 387153315 12867922 1666538..1667431 1 NC_017310.1 PFAM: ATPase-like, ParA/MinD; KEGG: dde:Dde_2075 hypothetical protein; ParA/MinD-like ATPase 1667431 12867922 Deval_1458 Desulfovibrio vulgaris RCH1 ParA/MinD-like ATPase YP_005702251.1 1666538 D 573059 CDS YP_005702252.1 387153316 12867923 1667550..1668107 1 NC_017310.1 KEGG: dde:Dde_2074 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1668107 12867923 Deval_1459 Desulfovibrio vulgaris RCH1 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_005702252.1 1667550 D 573059 CDS YP_005702253.1 387153317 12867924 1668137..1668409 1 NC_017310.1 KEGG: dde:Dde_2073 hypothetical protein; hypothetical protein 1668409 12867924 Deval_1460 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702253.1 1668137 D 573059 CDS YP_005702254.1 387153318 12867925 1668406..1668735 1 NC_017310.1 PFAM: Septum formation initiator; KEGG: dde:Dde_2072 cell division protein FtsB; septum formation initiator 1668735 12867925 Deval_1461 Desulfovibrio vulgaris RCH1 septum formation initiator YP_005702254.1 1668406 D 573059 CDS YP_005702255.1 387153319 12867926 1668719..1669672 1 NC_017310.1 KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein; response regulator receiver/SARP domain-containing protein 1669672 12867926 Deval_1462 Desulfovibrio vulgaris RCH1 response regulator receiver/SARP domain-containing protein YP_005702255.1 1668719 D 573059 CDS YP_005702256.1 387153320 12867927 1669718..1670674 1 NC_017310.1 KEGG: dds:Ddes_1196 hypothetical protein; hypothetical protein 1670674 12867927 Deval_1463 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702256.1 1669718 D 573059 CDS YP_005702257.1 387153321 12867928 1670767..1671780 1 NC_017310.1 PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: dde:Dde_2069 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase 1671780 12867928 Deval_1464 Desulfovibrio vulgaris RCH1 inositol phosphatase/fructose-16-bisphosphatase YP_005702257.1 1670767 D 573059 CDS YP_005702258.1 387153322 12867929 1671822..1672907 1 NC_017310.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: dde:Dde_2068 O-sialoglycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 1672907 12867929 Deval_1465 Desulfovibrio vulgaris RCH1 glycoprotease family metalloendopeptidase YP_005702258.1 1671822 D 573059 CDS YP_005702259.1 387153323 12867930 1673020..1673343 1 NC_017310.1 KEGG: dde:Dde_2067 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; thioredoxin 1673343 12867930 Deval_1466 Desulfovibrio vulgaris RCH1 thioredoxin YP_005702259.1 1673020 D 573059 CDS YP_005702260.1 387153324 12867931 1673343..1674266 1 NC_017310.1 KEGG: dde:Dde_2066 thioredoxin reductase (NADPH); TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 1674266 12867931 Deval_1467 Desulfovibrio vulgaris RCH1 thioredoxin reductase YP_005702260.1 1673343 D 573059 CDS YP_005702261.1 387153325 12867932 1674259..1674990 1 NC_017310.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dde:Dde_2065 putative lipoprotein; outer membrane assembly lipoprotein YfiO 1674990 12867932 Deval_1468 Desulfovibrio vulgaris RCH1 outer membrane assembly lipoprotein YfiO YP_005702261.1 1674259 D 573059 CDS YP_005702262.1 387153326 12867933 complement(1675091..1676242) 1 NC_017310.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: dds:Ddes_1555 polynucleotide adenylyltransferase region; Polynucleotide adenylyltransferase region 1676242 12867933 Deval_1469 Desulfovibrio vulgaris RCH1 Polynucleotide adenylyltransferase region YP_005702262.1 1675091 R 573059 CDS YP_005702263.1 387153327 12867934 1676292..1677224 1 NC_017310.1 KEGG: dde:Dde_2082 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin--acetyl-CoA-carboxylase ligase 1677224 12867934 Deval_1470 Desulfovibrio vulgaris RCH1 biotin--acetyl-CoA-carboxylase ligase YP_005702263.1 1676292 D 573059 CDS YP_005702264.1 387153328 12867935 1677309..1681013 1 NC_017310.1 KEGG: dde:Dde_2081 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; pyruvate carboxyltransferase; Conserved carboxylase region; biotin carboxylase domain protein; Carbamoyl-phosphate synthetase large chain domain protein; biotin/lipoyl attachment domain-containing protein; SMART: biotin carboxylase domain protein; carbamoyl-phosphate synthase subunit L 1681013 12867935 Deval_1471 Desulfovibrio vulgaris RCH1 carbamoyl-phosphate synthase subunit L YP_005702264.1 1677309 D 573059 CDS YP_005702265.1 387153329 12867936 1681157..1684732 1 NC_017310.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase; pyruvate phosphate dikinase PEP/pyruvate-binding protein 1684732 12867936 Deval_1472 Desulfovibrio vulgaris RCH1 pyruvate phosphate dikinase PEP/pyruvate-binding protein YP_005702265.1 1681157 D 573059 CDS YP_005702266.1 387153330 12867937 complement(1685527..1686354) 1 NC_017310.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: lip:LI0941 Mg2+/Co2+ transporter; hypothetical protein 1686354 12867937 Deval_1473 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702266.1 1685527 R 573059 CDS YP_005702267.1 387153331 12867938 complement(1686449..1687513) 1 NC_017310.1 KEGG: dde:Dde_1808 hypothetical protein; hypothetical protein 1687513 12867938 Deval_1474 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702267.1 1686449 R 573059 CDS YP_005702268.1 387153332 12867939 complement(1687774..1689663) 1 NC_017310.1 KEGG: dde:Dde_1809 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; glucose inhibited division protein A 1689663 12867939 Deval_1475 Desulfovibrio vulgaris RCH1 glucose inhibited division protein A YP_005702268.1 1687774 R 573059 CDS YP_005702269.1 387153333 12867940 complement(1689666..1690889) 1 NC_017310.1 KEGG: dde:Dde_1810 diaminopimelate aminotransferase; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 1690889 12867940 Deval_1476 Desulfovibrio vulgaris RCH1 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase YP_005702269.1 1689666 R 573059 CDS YP_005702270.1 387153334 12867941 complement(1691017..1691289) 1 NC_017310.1 KEGG: dds:Ddes_1932 hypothetical protein; hypothetical protein 1691289 12867941 Deval_1477 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702270.1 1691017 R 573059 CDS YP_005702271.1 387153335 12867942 complement(1691429..1692757) 1 NC_017310.1 KEGG: dde:Dde_1812 atrazine chlorohydrolase; PFAM: amidohydrolase; S-adenosylhomocysteine deaminase 1692757 12867942 Deval_1478 Desulfovibrio vulgaris RCH1 S-adenosylhomocysteine deaminase YP_005702271.1 1691429 R 573059 CDS YP_005702272.1 387153336 12867943 1692910..1693704 1 NC_017310.1 KEGG: drt:Dret_1708 putative carboxylesterase; putative carboxylesterase 1693704 12867943 Deval_1479 Desulfovibrio vulgaris RCH1 putative carboxylesterase YP_005702272.1 1692910 D 573059 CDS YP_005702273.1 387153337 12867944 1693923..1695446 1 NC_017310.1 KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase (NADPH) 1695446 12867944 Deval_1480 Desulfovibrio vulgaris RCH1 glutamate synthase (NADPH) YP_005702273.1 1693923 D 573059 CDS YP_005702274.1 387153338 12867945 1695461..1696555 1 NC_017310.1 PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit; glutamine amidotransferase 1696555 12867945 Deval_1481 Desulfovibrio vulgaris RCH1 glutamine amidotransferase YP_005702274.1 1695461 D 573059 CDS YP_005702275.1 387153339 12867946 1696558..1697313 1 NC_017310.1 PFAM: glutamate synthase alpha subunit domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit; glutamate synthase alpha subunit domain-containing protein 1697313 12867946 Deval_1482 Desulfovibrio vulgaris RCH1 glutamate synthase alpha subunit domain-containing protein YP_005702275.1 1696558 D 573059 CDS YP_005702276.1 387153340 12867947 1697814..1698179 1 NC_017310.1 KEGG: dde:Dde_1817 protein translocase subunit YajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase subunit YajC 1698179 12867947 Deval_1483 Desulfovibrio vulgaris RCH1 preprotein translocase subunit YajC YP_005702276.1 1697814 D 573059 CDS YP_005702277.1 387153341 12867948 1698310..1699908 1 NC_017310.1 KEGG: dde:Dde_1818 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecD 1699908 12867948 Deval_1484 Desulfovibrio vulgaris RCH1 protein-export membrane protein SecD YP_005702277.1 1698310 D 573059 CDS YP_005702278.1 387153342 12867949 1699921..1701009 1 NC_017310.1 KEGG: dde:Dde_1819 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecF 1701009 12867949 Deval_1485 Desulfovibrio vulgaris RCH1 protein-export membrane protein SecF YP_005702278.1 1699921 D 573059 CDS YP_005702279.1 387153343 12867950 1701161..1701472 1 NC_017310.1 PFAM: cytochrome c class I; KEGG: dde:Dde_1821 cytochrome c-553; cytochrome c class I 1701472 12867950 Deval_1486 Desulfovibrio vulgaris RCH1 cytochrome c class I YP_005702279.1 1701161 D 573059 CDS YP_005702280.1 387153344 12867951 1701914..1702669 1 NC_017310.1 KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC; hypothetical protein 1702669 12867951 Deval_1487 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702280.1 1701914 D 573059 CDS YP_005702281.1 387153345 12867952 1702693..1704318 1 NC_017310.1 KEGG: dde:Dde_1823 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 1704318 12867952 Deval_1488 Desulfovibrio vulgaris RCH1 cytochrome c oxidase subunit I YP_005702281.1 1702693 D 573059 CDS YP_005702282.1 387153346 12867953 1704311..1704940 1 NC_017310.1 PFAM: cytochrome c oxidase subunit III; KEGG: dba:Dbac_1540 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 1704940 12867953 Deval_1489 Desulfovibrio vulgaris RCH1 cytochrome c oxidase subunit III YP_005702282.1 1704311 D 573059 CDS YP_005702283.1 387153347 12867954 1704949..1705242 1 NC_017310.1 TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase, subunit IV; caa(3)-type oxidase, subunit IV 1705242 12867954 Deval_1490 Desulfovibrio vulgaris RCH1 caa(3)-type oxidase, subunit IV YP_005702283.1 1704949 D 573059 CDS YP_005702284.1 387153348 12867955 1705252..1706532 1 NC_017310.1 KEGG: dde:Dde_1826 cytochrome c oxidase, subunit II, putative; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c oxidase subunit II 1706532 12867955 Deval_1491 Desulfovibrio vulgaris RCH1 cytochrome c oxidase subunit II YP_005702284.1 1705252 D 573059 CDS YP_005702285.1 387153349 12867956 1706576..1707439 1 NC_017310.1 PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1827 protoheme IX farnesyltransferase, putative; UbiA prenyltransferase 1707439 12867956 Deval_1492 Desulfovibrio vulgaris RCH1 UbiA prenyltransferase YP_005702285.1 1706576 D 573059 CDS YP_005702286.1 387153350 12867957 1707457..1707879 1 NC_017310.1 KEGG: dde:Dde_1828 hypothetical protein; hypothetical protein 1707879 12867957 Deval_1493 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702286.1 1707457 D 573059 CDS YP_005702287.1 387153351 12867958 complement(1707990..1709576) 1 NC_017310.1 KEGG: dde:Dde_1829 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase 1709576 12867958 Deval_1494 Desulfovibrio vulgaris RCH1 L-aspartate oxidase YP_005702287.1 1707990 R 573059 CDS YP_005702288.1 387153352 12867959 complement(1709589..1710665) 1 NC_017310.1 TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: dde:Dde_1830 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A 1710665 12867959 Deval_1495 Desulfovibrio vulgaris RCH1 quinolinate synthetase complex subunit A YP_005702288.1 1709589 R 573059 CDS YP_005702289.1 387153353 12867960 complement(1710662..1711549) 1 NC_017310.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: dde:Dde_1831 nicotinate-nucleotide pyrophosphorylase [carboxylating]; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 1711549 12867960 Deval_1496 Desulfovibrio vulgaris RCH1 nicotinate-nucleotide pyrophosphorylase YP_005702289.1 1710662 R 573059 CDS YP_005702290.1 387153354 12867961 1711693..1713063 1 NC_017310.1 KEGG: dde:Dde_1832 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; magnesium transporter 1713063 12867961 Deval_1497 Desulfovibrio vulgaris RCH1 magnesium transporter YP_005702290.1 1711693 D 573059 CDS YP_005702291.1 387153355 12867962 complement(1713299..1714762) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1714762 12867962 Deval_1498 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005702291.1 1713299 R 573059 CDS YP_005702292.1 387153356 12867963 1714932..1716761 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1716761 12867963 Deval_1499 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005702292.1 1714932 D 573059 CDS YP_005702293.1 387153357 12867964 1716761..1717849 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1836 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1717849 12867964 Deval_1500 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005702293.1 1716761 D 573059 CDS YP_005702294.1 387153358 12867965 complement(1717880..1718740) 1 NC_017310.1 PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like; alpha/beta hydrolase fold protein 1718740 12867965 Deval_1501 Desulfovibrio vulgaris RCH1 alpha/beta hydrolase fold protein YP_005702294.1 1717880 R 573059 CDS YP_005702295.1 387153359 12867966 1718968..1720137 1 NC_017310.1 KEGG: dde:Dde_1838 hypothetical protein; hypothetical protein 1720137 12867966 Deval_1502 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702295.1 1718968 D 573059 CDS YP_005702296.1 387153360 12867967 1720404..1721351 1 NC_017310.1 KEGG: dde:Dde_2064 hypothetical protein; hypothetical protein 1721351 12867967 Deval_1503 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702296.1 1720404 D 573059 CDS YP_005702297.1 387153361 12867968 1721344..1723392 1 NC_017310.1 KEGG: dde:Dde_2063 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; translation elongation factor G 1723392 12867968 Deval_1504 Desulfovibrio vulgaris RCH1 translation elongation factor G YP_005702297.1 1721344 D 573059 CDS YP_005702298.1 387153362 12867969 1723399..1723914 1 NC_017310.1 PFAM: Protein of unknown function DUF2062; KEGG: dde:Dde_2062 hypothetical protein; hypothetical protein 1723914 12867969 Deval_1505 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702298.1 1723399 D 573059 CDS YP_005702299.1 387153363 12867970 1723904..1724806 1 NC_017310.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dde:Dde_2059 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase-like; dimethyladenosine transferase 1724806 12867970 Deval_1506 Desulfovibrio vulgaris RCH1 dimethyladenosine transferase YP_005702299.1 1723904 D 573059 CDS YP_005702300.1 387153364 12867971 1725008..1725280 1 NC_017310.1 KEGG: dde:Dde_2058 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1725280 12867971 Deval_1507 Desulfovibrio vulgaris RCH1 histone family protein DNA-binding protein YP_005702300.1 1725008 D 573059 CDS YP_005702301.1 387153365 12867972 1725291..1725494 1 NC_017310.1 KEGG: dde:Dde_2057 hypothetical protein; hypothetical protein 1725494 12867972 Deval_1508 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702301.1 1725291 D 573059 CDS YP_005702302.1 387153366 12867973 1725611..1725814 1 NC_017310.1 KEGG: dds:Ddes_1089 ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; 30S ribosomal protein S21 1725814 12867973 Deval_1509 Desulfovibrio vulgaris RCH1 30S ribosomal protein S21 YP_005702302.1 1725611 D 573059 CDS YP_005702303.1 387153367 12867974 1725930..1726379 1 NC_017310.1 KEGG: dde:Dde_2055 GatB/YqeY family protein; GatB/YqeY family protein 1726379 12867974 Deval_1510 Desulfovibrio vulgaris RCH1 GatB/YqeY family protein YP_005702303.1 1725930 D 573059 CDS YP_005702304.1 387153368 12867975 1726386..1728701 1 NC_017310.1 KEGG: dde:Dde_2054 DNA mismatch repair protein MutS-like; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; Smr protein/MutS2 1728701 12867975 Deval_1511 Desulfovibrio vulgaris RCH1 Smr protein/MutS2 YP_005702304.1 1726386 D 573059 CDS YP_005702305.1 387153369 12867976 1728734..1730452 1 NC_017310.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; KEGG: dde:Dde_2053 DNA primase; SMART: Toprim sub domain-containing protein; DNA primase 1730452 12867976 Deval_1512 Desulfovibrio vulgaris RCH1 DNA primase YP_005702305.1 1728734 D 573059 CDS YP_005702306.1 387153370 12867977 1730445..1732217 1 NC_017310.1 KEGG: dde:Dde_2052 sigma-70 factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; RpoD subfamily RNA polymerase sigma-70 subunit 1732217 12867977 Deval_1513 Desulfovibrio vulgaris RCH1 RpoD subfamily RNA polymerase sigma-70 subunit YP_005702306.1 1730445 D 573059 CDS YP_005702307.1 387153371 12867978 1732343..1733071 1 NC_017310.1 KEGG: dma:DMR_22330 hypothetical protein; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease 1733071 12867978 Deval_1514 Desulfovibrio vulgaris RCH1 nuclease YP_005702307.1 1732343 D 573059 CDS YP_005702308.1 387153372 12867979 1733104..1734162 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2050 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 1734162 12867979 Deval_1515 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005702308.1 1733104 D 573059 CDS YP_005702309.1 387153373 12867980 complement(1734722..1735324) 1 NC_017310.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 1735324 12867980 Deval_1516 Desulfovibrio vulgaris RCH1 multiple antibiotic resistance (MarC)-like protein YP_005702309.1 1734722 R 573059 CDS YP_005702310.1 387153374 12867981 complement(1735528..1736289) 1 NC_017310.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1841 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 1736289 12867981 Deval_1517 Desulfovibrio vulgaris RCH1 short-chain dehydrogenase/reductase SDR YP_005702310.1 1735528 R 573059 CDS YP_005702311.1 387153375 12867982 1736461..1737213 1 NC_017310.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1842 hypothetical protein; hypothetical protein 1737213 12867982 Deval_1518 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702311.1 1736461 D 573059 CDS YP_005702312.1 387153376 12867983 1737206..1738633 1 NC_017310.1 KEGG: dde:Dde_1843 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; iron-sulfur cluster binding protein 1738633 12867983 Deval_1519 Desulfovibrio vulgaris RCH1 iron-sulfur cluster binding protein YP_005702312.1 1737206 D 573059 CDS YP_005702313.1 387153377 12867984 1738626..1739291 1 NC_017310.1 PFAM: protein of unknown function DUF162; KEGG: azl:AZL_e03870 hypothetical protein; hypothetical protein 1739291 12867984 Deval_1520 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702313.1 1738626 D 573059 CDS YP_005702314.1 387153378 12867985 1739476..1739781 1 NC_017310.1 KEGG: geo:Geob_3738 protein of unknown function DUF1653; manually curated; PFAM: protein of unknown function DUF1653; hypothetical protein 1739781 12867985 Deval_1521 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702314.1 1739476 D 573059 CDS YP_005702315.1 387153379 12867986 1740097..1741542 1 NC_017310.1 KEGG: dds:Ddes_1202 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1741542 12867986 Deval_1522 Desulfovibrio vulgaris RCH1 cation diffusion facilitator family transporter YP_005702315.1 1740097 D 573059 CDS YP_005702316.1 387153380 12867987 1741565..1742209 1 NC_017310.1 KEGG: dma:DMR_00600 putative carbonic anhydrase; PFAM: carbonic anhydrase; carbonate dehydratase 1742209 12867987 Deval_1523 Desulfovibrio vulgaris RCH1 carbonate dehydratase YP_005702316.1 1741565 D 573059 CDS YP_005702317.1 387153381 12867988 1742683..1743327 1 NC_017310.1 KEGG: dal:Dalk_3412 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1743327 12867988 Deval_1524 Desulfovibrio vulgaris RCH1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_005702317.1 1742683 D 573059 CDS YP_005702318.1 387153382 12867989 complement(1743590..1744471) 1 NC_017310.1 KEGG: dma:DMR_00060 hypothetical protein; hypothetical protein 1744471 12867989 Deval_1525 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702318.1 1743590 R 573059 CDS YP_005702319.1 387153383 12867990 1744970..1746991 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: dat:HRM2_26590 GltD1; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1746991 12867990 Deval_1526 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005702319.1 1744970 D 573059 CDS YP_005702320.1 387153384 12867991 1747015..1748835 1 NC_017310.1 KEGG: dat:HRM2_26580 HydA2; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit; hydrogenase, Fe-only 1748835 12867991 Deval_1527 Desulfovibrio vulgaris RCH1 hydrogenase, Fe-only YP_005702320.1 1747015 D 573059 CDS YP_005702321.1 387153385 12867992 complement(1749088..1749459) 1 NC_017310.1 KEGG: dma:DMR_12950 Fe hydrogenase small subunit; PFAM: iron hydrogenase small subunit; ferredoxin hydrogenase 1749459 12867992 Deval_1528 Desulfovibrio vulgaris RCH1 ferredoxin hydrogenase YP_005702321.1 1749088 R 573059 CDS YP_005702322.1 387153386 12867993 complement(1749471..1750736) 1 NC_017310.1 TIGRFAM: hydrogenase, Fe-only; KEGG: dma:DMR_12960 Fe hydrogenase large subunit; PFAM: hydrogenase large subunit domain protein; hydrogenase, Fe-only 1750736 12867993 Deval_1529 Desulfovibrio vulgaris RCH1 hydrogenase, Fe-only YP_005702322.1 1749471 R 573059 CDS YP_005702323.1 387153387 12867994 complement(1750889..1752121) 1 NC_017310.1 KEGG: ppd:Ppro_1494 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; small GTP-binding protein 1752121 12867994 Deval_1530 Desulfovibrio vulgaris RCH1 small GTP-binding protein YP_005702323.1 1750889 R 573059 CDS YP_005702324.1 387153388 12867995 complement(1752126..1753085) 1 NC_017310.1 KEGG: dds:Ddes_1504 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin and thiamin synthesis associated; radical SAM protein 1753085 12867995 Deval_1531 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005702324.1 1752126 R 573059 CDS YP_005702325.1 387153389 12867996 complement(1753091..1754503) 1 NC_017310.1 PFAM: fumarate lyase; Fumarase C-like; KEGG: ppd:Ppro_1493 aspartate ammonia-lyase; fumarate lyase 1754503 12867996 Deval_1532 Desulfovibrio vulgaris RCH1 fumarate lyase YP_005702325.1 1753091 R 573059 CDS YP_005702326.1 387153390 12867997 complement(1754490..1755884) 1 NC_017310.1 PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: dds:Ddes_1505 biotin and thiamin synthesis associated; biotin and thiamin synthesis associated protein 1755884 12867997 Deval_1533 Desulfovibrio vulgaris RCH1 biotin and thiamin synthesis associated protein YP_005702326.1 1754490 R 573059 CDS YP_005702327.1 387153391 12867998 complement(1755912..1756181) 1 NC_017310.1 KEGG: tte:TTE1595 hypothetical protein; hypothetical protein 1756181 12867998 Deval_1534 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702327.1 1755912 R 573059 CDS YP_005702328.1 387153392 12867999 complement(1756975..1757433) 1 NC_017310.1 PFAM: protein of unknown function DUF307; KEGG: reu:Reut_B5323 hypothetical protein; hypothetical protein 1757433 12867999 Deval_1535 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702328.1 1756975 R 573059 CDS YP_005702329.1 387153393 12868000 1757682..1758266 1 NC_017310.1 PFAM: regulatory protein TetR; KEGG: rlt:Rleg2_6295 transcriptional regulator, TetR family; regulatory protein TetR 1758266 12868000 Deval_1536 Desulfovibrio vulgaris RCH1 regulatory protein TetR YP_005702329.1 1757682 D 573059 CDS YP_005702330.1 387153394 12868001 1758371..1758463 1 NC_017310.1 hypothetical protein 1758463 12868001 Deval_1537 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702330.1 1758371 D 573059 CDS YP_005702331.1 387153395 12868002 1758794..1759273 1 NC_017310.1 KEGG: dsa:Desal_2665 putative transcriptional regulator, ModE family; manually curated; PFAM: regulatory protein LysR; putative ModE family transcriptional regulator 1759273 12868002 Deval_1538 Desulfovibrio vulgaris RCH1 putative ModE family transcriptional regulator YP_005702331.1 1758794 D 573059 CDS YP_005702332.1 387153396 12868003 complement(1759438..1760145) 1 NC_017310.1 KEGG: dds:Ddes_1303 hypothetical protein; hypothetical protein 1760145 12868003 Deval_1539 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702332.1 1759438 R 573059 CDS YP_005702333.1 387153397 12868004 1760491..1761612 1 NC_017310.1 PFAM: integrase family protein; KEGG: dol:Dole_2954 integrase family protein; integrase family protein 1761612 12868004 Deval_1540 Desulfovibrio vulgaris RCH1 integrase family protein YP_005702333.1 1760491 D 573059 CDS YP_005702334.1 387153398 12868005 complement(1761584..1761847) 1 NC_017310.1 KEGG: sjp:SJA_P1-01890 putative phage transcriptional regulator AlpA; hypothetical protein 1761847 12868005 Deval_1541 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702334.1 1761584 R 573059 CDS YP_005702335.1 387153399 12868006 complement(1761989..1762231) 1 NC_017310.1 hypothetical protein 1762231 12868006 Deval_1542 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702335.1 1761989 R 573059 CDS YP_005702336.1 387153400 12868007 complement(1762242..1762484) 1 NC_017310.1 KEGG: kcr:Kcr_1527 DNA polymerase II large subunit; DNA polymerase II large subunit 1762484 12868007 Deval_1543 Desulfovibrio vulgaris RCH1 DNA polymerase II large subunit YP_005702336.1 1762242 R 573059 CDS YP_005702337.1 387153401 12868008 complement(1762481..1762888) 1 NC_017310.1 PFAM: CI repressor; KEGG: dde:Dde_2949 DNA-binding protein, putative; CI repressor 1762888 12868008 Deval_1544 Desulfovibrio vulgaris RCH1 CI repressor YP_005702337.1 1762481 R 573059 CDS YP_005702338.1 387153402 12868009 complement(1762885..1762992) 1 NC_017310.1 hypothetical protein 1762992 12868009 Deval_1545 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702338.1 1762885 R 573059 CDS YP_005702339.1 387153403 12868010 complement(1762979..1763155) 1 NC_017310.1 hypothetical protein 1763155 12868010 Deval_1546 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702339.1 1762979 R 573059 CDS YP_005702340.1 387153404 12868011 complement(1763142..1763381) 1 NC_017310.1 KEGG: mkm:Mkms_5796 helicase domain-containing protein; hypothetical protein 1763381 12868011 Deval_1547 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702340.1 1763142 R 573059 CDS YP_005702341.1 387153405 12868012 complement(1763752..1764072) 1 NC_017310.1 KEGG: hypothetical protein; hypothetical protein 1764072 12868012 Deval_1548 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702341.1 1763752 R 573059 CDS YP_005702342.1 387153406 12868013 complement(1764101..1764976) 1 NC_017310.1 KEGG: bgl:bglu_1g23810 hypothetical protein; hypothetical protein 1764976 12868013 Deval_1549 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702342.1 1764101 R 573059 CDS YP_005702343.1 387153407 12868014 complement(1765105..1766871) 1 NC_017310.1 KEGG: sbn:Sbal195_0370 hypothetical protein; hypothetical protein 1766871 12868014 Deval_1550 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702343.1 1765105 R 573059 CDS YP_005702344.1 387153408 12868015 complement(1766858..1769803) 1 NC_017310.1 KEGG: bbt:BBta_1158 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase 1769803 12868015 Deval_1551 Desulfovibrio vulgaris RCH1 histidine kinase YP_005702344.1 1766858 R 573059 CDS YP_005702345.1 387153409 12868016 complement(1769844..1770953) 1 NC_017310.1 KEGG: bbt:BBta_1159 putative 5-methylcytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 1770953 12868016 Deval_1552 Desulfovibrio vulgaris RCH1 DNA-cytosine methyltransferase YP_005702345.1 1769844 R 573059 CDS YP_005702346.1 387153410 12868017 complement(1771188..1771727) 1 NC_017310.1 KEGG: dsa:Desal_2151 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1771727 12868017 Deval_1553 Desulfovibrio vulgaris RCH1 helix-turn-helix domain-containing protein YP_005702346.1 1771188 R 573059 CDS YP_005702347.1 387153411 12868018 1771794..1772036 1 NC_017310.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: gka:GK0494 transcriptional repressor of PBSX genes; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1772036 12868018 Deval_1554 Desulfovibrio vulgaris RCH1 helix-turn-helix domain-containing protein YP_005702347.1 1771794 D 573059 CDS YP_005702348.1 387153412 12868019 1772033..1772557 1 NC_017310.1 KEGG: dsa:Desal_2384 hypothetical protein; hypothetical protein 1772557 12868019 Deval_1555 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702348.1 1772033 D 573059 CDS YP_005702349.1 387153413 12868020 complement(1772563..1772802) 1 NC_017310.1 TIGRFAM: prevent-host-death family protein; KEGG: azo:azo2023 hypothetical protein; prevent-host-death family protein 1772802 12868020 Deval_1556 Desulfovibrio vulgaris RCH1 prevent-host-death family protein YP_005702349.1 1772563 R 573059 CDS YP_005702350.1 387153414 12868021 complement(1772891..1773229) 1 NC_017310.1 KEGG: hsa:100292623 hypothetical protein LOC100292623; hypothetical protein 1773229 12868021 Deval_1557 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702350.1 1772891 R 573059 CDS YP_005702351.1 387153415 12868022 1773272..1774243 1 NC_017310.1 KEGG: dsy:DSY2199 hypothetical protein; hypothetical protein 1774243 12868022 Deval_1558 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702351.1 1773272 D 573059 CDS YP_005702352.1 387153416 12868023 1774240..1774641 1 NC_017310.1 KEGG: nve:NEMVE_v1g206838 hypothetical protein; hypothetical protein 1774641 12868023 Deval_1559 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702352.1 1774240 D 573059 CDS YP_005702353.1 387153417 12868024 complement(1774656..1775702) 1 NC_017310.1 KEGG: ara:Arad_4108 hypothetical protein; hypothetical protein 1775702 12868024 Deval_1560 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702353.1 1774656 R 573059 CDS YP_005702354.1 387153418 12868025 1775789..1776433 1 NC_017310.1 PFAM: integrase family protein; KEGG: ctc:pE88_50 integrase/recombinase; integrase family protein 1776433 12868025 Deval_1561 Desulfovibrio vulgaris RCH1 integrase family protein YP_005702354.1 1775789 D 573059 CDS YP_005702355.1 387153419 12868026 1776411..1776608 1 NC_017310.1 KEGG: bcv:Bcav_1256 DNA binding domain protein, excisionase family; excisionase family DNA binding domain-containing protein 1776608 12868026 Deval_1562 Desulfovibrio vulgaris RCH1 excisionase family DNA binding domain-containing protein YP_005702355.1 1776411 D 573059 CDS YP_005702356.1 387153420 12868027 1776611..1776829 1 NC_017310.1 KEGG: lxx:Lxx13200 acetolactate synthase 1 catalytic subunit; hypothetical protein 1776829 12868027 Deval_1563 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702356.1 1776611 D 573059 CDS YP_005702357.1 387153421 12868028 complement(1776936..1777130) 1 NC_017310.1 KEGG: mar:MAE_12670 hypothetical protein; hypothetical protein 1777130 12868028 Deval_1564 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702357.1 1776936 R 573059 CDS YP_005702358.1 387153422 12868029 complement(1777278..1781078) 1 NC_017310.1 KEGG: bpf:BpOF4_17205 hypothetical protein; hypothetical protein 1781078 12868029 Deval_1565 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702358.1 1777278 R 573059 CDS YP_005702359.1 387153423 12868030 complement(1781680..1781985) 1 NC_017310.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mgm:Mmc1_2896 XRE family plasmid maintenance system antidote protein; SMART: helix-turn-helix domain protein; plasmid maintenance system antidote protein 1781985 12868030 Deval_1566 Desulfovibrio vulgaris RCH1 plasmid maintenance system antidote protein YP_005702359.1 1781680 R 573059 CDS YP_005702360.1 387153424 12868031 complement(1781995..1782273) 1 NC_017310.1 PFAM: plasmid maintenance system killer; KEGG: mag:amb0661 plasmid maintenance system killer protein; plasmid maintenance system killer protein 1782273 12868031 Deval_1567 Desulfovibrio vulgaris RCH1 plasmid maintenance system killer protein YP_005702360.1 1781995 R 573059 CDS YP_005702361.1 387153425 12868032 1782544..1782960 1 NC_017310.1 KEGG: cro:ROD_26091 hypothetical protein; hypothetical protein 1782960 12868032 Deval_1568 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702361.1 1782544 D 573059 CDS YP_005702362.1 387153426 12868033 1782960..1783310 1 NC_017310.1 KEGG: plt:Plut_0821 hypothetical protein; hypothetical protein 1783310 12868033 Deval_1569 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702362.1 1782960 D 573059 CDS YP_005702363.1 387153427 12868034 1783307..1783555 1 NC_017310.1 KEGG: sme:SMc01942 urease accessory protein; urease accessory protein 1783555 12868034 Deval_1570 Desulfovibrio vulgaris RCH1 urease accessory protein YP_005702363.1 1783307 D 573059 CDS YP_005702364.1 387153428 12868035 1783691..1784299 1 NC_017310.1 KEGG: ajs:Ajs_0939 hypothetical protein; hypothetical protein 1784299 12868035 Deval_1571 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702364.1 1783691 D 573059 CDS YP_005702365.1 387153429 12868036 1784286..1785890 1 NC_017310.1 KEGG: dsa:Desal_2352 phage uncharacterized protein; phage protein 1785890 12868036 Deval_1572 Desulfovibrio vulgaris RCH1 phage protein YP_005702365.1 1784286 D 573059 CDS YP_005702366.1 387153430 12868037 1785887..1786441 1 NC_017310.1 KEGG: dds:Ddes_0718 hypothetical protein; hypothetical protein 1786441 12868037 Deval_1573 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702366.1 1785887 D 573059 CDS YP_005702367.1 387153431 12868038 1786438..1786791 1 NC_017310.1 KEGG: ecg:E2348C_2756 hypothetical protein; hypothetical protein 1786791 12868038 Deval_1574 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702367.1 1786438 D 573059 CDS YP_005702368.1 387153432 12868039 1786792..1788444 1 NC_017310.1 KEGG: dde:Dde_2550 hypothetical protein; hypothetical protein 1788444 12868039 Deval_1575 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702368.1 1786792 D 573059 CDS YP_005702369.1 387153433 12868040 1788444..1788776 1 NC_017310.1 KEGG: dsa:Desal_1405 hypothetical protein; hypothetical protein 1788776 12868040 Deval_1576 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702369.1 1788444 D 573059 CDS YP_005702370.1 387153434 12868041 1788773..1789612 1 NC_017310.1 KEGG: dde:Dde_2548 hypothetical protein; hypothetical protein 1789612 12868041 Deval_1577 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702370.1 1788773 D 573059 CDS YP_005702371.1 387153435 12868042 1789617..1790549 1 NC_017310.1 KEGG: dde:Dde_2547 hypothetical protein; hypothetical protein 1790549 12868042 Deval_1578 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702371.1 1789617 D 573059 CDS YP_005702372.1 387153436 12868043 1790606..1791007 1 NC_017310.1 KEGG: ddr:Deide_02000 conserved hypothetical protein, precursor; hypothetical protein 1791007 12868043 Deval_1579 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702372.1 1790606 D 573059 CDS YP_005702373.1 387153437 12868044 1791019..1791363 1 NC_017310.1 KEGG: mxa:MXAN_3056 hypothetical protein; hypothetical protein 1791363 12868044 Deval_1580 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702373.1 1791019 D 573059 CDS YP_005702374.1 387153438 12868045 1791405..1791992 1 NC_017310.1 KEGG: dde:Dde_2546 hypothetical protein; hypothetical protein 1791992 12868045 Deval_1581 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702374.1 1791405 D 573059 CDS YP_005702375.1 387153439 12868046 1792165..1794258 1 NC_017310.1 KEGG: dde:Dde_2545 hypothetical protein; hypothetical protein 1794258 12868046 Deval_1582 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702375.1 1792165 D 573059 CDS YP_005702376.1 387153440 12868047 1794267..1794902 1 NC_017310.1 KEGG: dde:Dde_2543 hypothetical protein; hypothetical protein 1794902 12868047 Deval_1583 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702376.1 1794267 D 573059 CDS YP_005702377.1 387153441 12868048 1795061..1796473 1 NC_017310.1 KEGG: ade:Adeh_2705 response regulator receiver; hypothetical protein 1796473 12868048 Deval_1584 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702377.1 1795061 D 573059 CDS YP_005702378.1 387153442 12868049 1797120..1797698 1 NC_017310.1 KEGG: xca:xccb100_1252 hypothetical protein; hypothetical protein 1797698 12868049 Deval_1585 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702378.1 1797120 D 573059 CDS YP_005702379.1 387153443 12868050 1797711..1799231 1 NC_017310.1 KEGG: xca:xccb100_1251 type I site-specific DNA-methyltransferase catalytic subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; type I restriction-modification system, M subunit 1799231 12868050 Deval_1586 Desulfovibrio vulgaris RCH1 type I restriction-modification system, M subunit YP_005702379.1 1797711 D 573059 CDS YP_005702380.1 387153444 12868051 1799234..1800247 1 NC_017310.1 KEGG: dap:Dacet_1979 hypothetical protein; hypothetical protein 1800247 12868051 Deval_1587 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702380.1 1799234 D 573059 CDS YP_005702381.1 387153445 12868053 1800509..1801759 1 NC_017310.1 PFAM: restriction modification system DNA specificity domain; KEGG: ypb:YPTS_4099 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 1801759 12868053 Deval_1589 Desulfovibrio vulgaris RCH1 restriction modification system DNA specificity domain-containing protein YP_005702381.1 1800509 D 573059 CDS YP_005702382.1 387153446 12868054 1801786..1802013 1 NC_017310.1 KEGG: tit:Thit_1410 protein of unknown function DUF2188; hypothetical protein 1802013 12868054 Deval_1590 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702382.1 1801786 D 573059 CDS YP_005702383.1 387153447 12868055 1802192..1805491 1 NC_017310.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: xcb:XC_1204 HsdR protein; SMART: DEAD-like helicase; HsdR family type I site-specific deoxyribonuclease 1805491 12868055 Deval_1591 Desulfovibrio vulgaris RCH1 HsdR family type I site-specific deoxyribonuclease YP_005702383.1 1802192 D 573059 CDS YP_005702384.1 387153448 12868056 1805478..1806221 1 NC_017310.1 PFAM: protein of unknown function DUF45; KEGG: ypb:YPTS_4096 hypothetical protein; hypothetical protein 1806221 12868056 Deval_1592 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702384.1 1805478 D 573059 CDS YP_005702385.1 387153449 12868057 complement(1806580..1807566) 1 NC_017310.1 KEGG: sse:Ssed_3640 hypothetical protein; hypothetical protein 1807566 12868057 Deval_1593 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702385.1 1806580 R 573059 CDS YP_005702386.1 387153450 12868058 complement(1807647..1808894) 1 NC_017310.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: glo:Glov_0021 beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase 1808894 12868058 Deval_1594 Desulfovibrio vulgaris RCH1 RNA-metabolising metallo-beta-lactamase YP_005702386.1 1807647 R 573059 CDS YP_005702387.1 387153451 12868059 1809674..1810132 1 NC_017310.1 KEGG: npu:Npun_F5233 TatD-related deoxyribonuclease; hypothetical protein 1810132 12868059 Deval_1595 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702387.1 1809674 D 573059 CDS YP_005702388.1 387153452 12868061 1810663..1811241 1 NC_017310.1 manually curated; KEGG: apb:SAR116_2344 hypothetical protein; hypothetical protein 1811241 12868061 Deval_1597 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702388.1 1810663 D 573059 CDS YP_005702389.1 387153453 12868062 1811244..1811612 1 NC_017310.1 KEGG: apb:SAR116_2345 hypothetical protein; hypothetical protein 1811612 12868062 Deval_1598 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702389.1 1811244 D 573059 CDS YP_005702390.1 387153454 12868063 1811605..1812114 1 NC_017310.1 KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 1812114 12868063 Deval_1599 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702390.1 1811605 D 573059 CDS YP_005702391.1 387153455 12868064 1812130..1812339 1 NC_017310.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator; phage/conjugal plasmid C-4 type zinc finger protein, TraR family 1812339 12868064 Deval_1600 Desulfovibrio vulgaris RCH1 phage/conjugal plasmid C-4 type zinc finger protein, TraR family YP_005702391.1 1812130 D 573059 CDS YP_005702392.1 387153456 12868066 1812603..1813607 1 NC_017310.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: dds:Ddes_1769 glutamyl-tRNA synthetase class Ic; glutamyl/glutaminyl-tRNA synthetase 1813607 12868066 Deval_1601 Desulfovibrio vulgaris RCH1 glutamyl/glutaminyl-tRNA synthetase YP_005702392.1 1812603 D 573059 CDS YP_005702393.1 387153457 12868067 1813778..1814173 1 NC_017310.1 KEGG: dps:DP2880 hypothetical protein; hypothetical protein 1814173 12868067 Deval_1602 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702393.1 1813778 D 573059 CDS YP_005702394.1 387153458 12868068 complement(1814473..1815048) 1 NC_017310.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator; TetR family transcriptional regulator 1815048 12868068 Deval_1603 Desulfovibrio vulgaris RCH1 TetR family transcriptional regulator YP_005702394.1 1814473 R 573059 CDS YP_005702395.1 387153459 12868069 complement(1815610..1816419) 1 NC_017310.1 KEGG: drt:Dret_1332 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1816419 12868069 Deval_1604 Desulfovibrio vulgaris RCH1 phospholipid/glycerol acyltransferase YP_005702395.1 1815610 R 573059 CDS YP_005702396.1 387153460 12868070 complement(1816416..1817123) 1 NC_017310.1 KEGG: dde:Dde_1999 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 1817123 12868070 Deval_1605 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005702396.1 1816416 R 573059 CDS YP_005702397.1 387153461 12868071 complement(1817120..1818355) 1 NC_017310.1 KEGG: dds:Ddes_1168 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; AAA ATPase 1818355 12868071 Deval_1606 Desulfovibrio vulgaris RCH1 AAA ATPase YP_005702397.1 1817120 R 573059 CDS YP_005702398.1 387153462 12868072 complement(1818352..1819101) 1 NC_017310.1 PFAM: protein of unknown function DUF558; KEGG: dde:Dde_1997 16S ribosomal RNA methyltransferase RsmE; hypothetical protein 1819101 12868072 Deval_1607 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702398.1 1818352 R 573059 CDS YP_005702399.1 387153463 12868073 complement(1819153..1820283) 1 NC_017310.1 KEGG: dde:Dde_1996 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; glycine cleavage system T protein 1820283 12868073 Deval_1608 Desulfovibrio vulgaris RCH1 glycine cleavage system T protein YP_005702399.1 1819153 R 573059 CDS YP_005702400.1 387153464 12868074 complement(1820280..1822016) 1 NC_017310.1 KEGG: dde:Dde_1995 hypothetical protein; hypothetical protein 1822016 12868074 Deval_1609 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702400.1 1820280 R 573059 CDS YP_005702401.1 387153465 12868075 1822285..1823319 1 NC_017310.1 KEGG: dds:Ddes_1171 putative GAF sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein; GAF domain-containing protein 1823319 12868075 Deval_1610 Desulfovibrio vulgaris RCH1 GAF domain-containing protein YP_005702401.1 1822285 D 573059 CDS YP_005702402.1 387153466 12868076 1823319..1824341 1 NC_017310.1 KEGG: dde:Dde_1993 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein 1824341 12868076 Deval_1611 Desulfovibrio vulgaris RCH1 MreB/Mrl family cell shape determining protein YP_005702402.1 1823319 D 573059 CDS YP_005702403.1 387153467 12868077 1824360..1825151 1 NC_017310.1 PFAM: inositol monophosphatase; KEGG: dde:Dde_1992 inositol-1-monophosphatase; inositol monophosphatase 1825151 12868077 Deval_1612 Desulfovibrio vulgaris RCH1 inositol monophosphatase YP_005702403.1 1824360 D 573059 CDS YP_005702404.1 387153468 12868078 complement(1825109..1825645) 1 NC_017310.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_1991 isopentenyl-diphosphate delta-isomerase; NUDIX hydrolase 1825645 12868078 Deval_1613 Desulfovibrio vulgaris RCH1 NUDIX hydrolase YP_005702404.1 1825109 R 573059 CDS YP_005702405.1 387153469 12868079 1825668..1826162 1 NC_017310.1 KEGG: dde:Dde_1990 SSU ribosomal protein S18P alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 1826162 12868079 Deval_1614 Desulfovibrio vulgaris RCH1 ribosomal-protein-alanine acetyltransferase YP_005702405.1 1825668 D 573059 CDS YP_005702406.1 387153470 12868080 1826182..1826937 1 NC_017310.1 TIGRFAM: triosephosphate isomerase; KEGG: dde:Dde_1989 triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1826937 12868080 Deval_1615 Desulfovibrio vulgaris RCH1 triosephosphate isomerase YP_005702406.1 1826182 D 573059 CDS YP_005702407.1 387153471 12868081 1826975..1827325 1 NC_017310.1 KEGG: dds:Ddes_1177 preprotein translocase, SecG subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 1827325 12868081 Deval_1616 Desulfovibrio vulgaris RCH1 preprotein translocase subunit SecG YP_005702407.1 1826975 D 573059 CDS YP_005702408.1 387153472 12868083 complement(1827665..1827829) 1 NC_017310.1 KEGG: dsa:Desal_3111 hypothetical protein; hypothetical protein 1827829 12868083 Deval_1617 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702408.1 1827665 R 573059 CDS YP_005702409.1 387153473 12868084 complement(1827888..1828538) 1 NC_017310.1 PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dde:Dde_1980 transcriptional regulator, putative; putative phage repressor 1828538 12868084 Deval_1618 Desulfovibrio vulgaris RCH1 putative phage repressor YP_005702409.1 1827888 R 573059 CDS YP_005702410.1 387153474 12868085 complement(1829118..1830062) 1 NC_017310.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: lip:LI0871 acyltransferase; lipid A biosynthesis acyltransferase 1830062 12868085 Deval_1619 Desulfovibrio vulgaris RCH1 lipid A biosynthesis acyltransferase YP_005702410.1 1829118 R 573059 CDS YP_005702411.1 387153475 12868086 complement(1830059..1830685) 1 NC_017310.1 PFAM: protein of unknown function DUF374; KEGG: dde:Dde_1961 hypothetical protein; hypothetical protein 1830685 12868086 Deval_1620 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702411.1 1830059 R 573059 CDS YP_005702412.1 387153476 12868087 complement(1830682..1832487) 1 NC_017310.1 KEGG: dde:Dde_1960 lipid A export ATP-binding/permease protein MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; ABC transporter 1832487 12868087 Deval_1621 Desulfovibrio vulgaris RCH1 ABC transporter YP_005702412.1 1830682 R 573059 CDS YP_005702413.1 387153477 12868088 1832599..1833237 1 NC_017310.1 TIGRFAM: selenium metabolism protein YedF; KEGG: dde:Dde_1959 hypothetical protein; selenium metabolism protein YedF 1833237 12868088 Deval_1622 Desulfovibrio vulgaris RCH1 selenium metabolism protein YedF YP_005702413.1 1832599 D 573059 CDS YP_005702414.1 387153478 12868089 1833234..1834112 1 NC_017310.1 KEGG: dde:Dde_1958 pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 1834112 12868089 Deval_1623 Desulfovibrio vulgaris RCH1 RNA-binding S4 domain-containing protein YP_005702414.1 1833234 D 573059 CDS YP_005702415.1 387153479 12868090 complement(1834292..1834969) 1 NC_017310.1 KEGG: dds:Ddes_1206 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 1834969 12868090 Deval_1624 Desulfovibrio vulgaris RCH1 outer membrane lipoprotein carrier protein LolA YP_005702415.1 1834292 R 573059 CDS YP_005702416.1 387153480 12868091 complement(1834987..1837317) 1 NC_017310.1 KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; cell division protein FtsK 1837317 12868091 Deval_1625 Desulfovibrio vulgaris RCH1 cell division protein FtsK YP_005702416.1 1834987 R 573059 CDS YP_005702417.1 387153481 12868092 complement(1837447..1838004) 1 NC_017310.1 KEGG: lip:LI0067 translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein; translation elongation factor P 1838004 12868092 Deval_1626 Desulfovibrio vulgaris RCH1 translation elongation factor P YP_005702417.1 1837447 R 573059 CDS YP_005702418.1 387153482 12868093 complement(1838045..1838512) 1 NC_017310.1 KEGG: dde:Dde_1952 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase 1838512 12868093 Deval_1627 Desulfovibrio vulgaris RCH1 3-dehydroquinate dehydratase YP_005702418.1 1838045 R 573059 CDS YP_005702419.1 387153483 12868094 1838657..1839307 1 NC_017310.1 KEGG: dde:Dde_1950 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis GTP-binding protein YsxC 1839307 12868094 Deval_1628 Desulfovibrio vulgaris RCH1 ribosome biogenesis GTP-binding protein YsxC YP_005702419.1 1838657 D 573059 CDS YP_005702420.1 387153484 12868095 complement(1839426..1840508) 1 NC_017310.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative; YjgP/YjgQ family permease 1840508 12868095 Deval_1629 Desulfovibrio vulgaris RCH1 YjgP/YjgQ family permease YP_005702420.1 1839426 R 573059 CDS YP_005702421.1 387153485 12868096 complement(1840505..1841647) 1 NC_017310.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative; YjgP/YjgQ family permease 1841647 12868096 Deval_1630 Desulfovibrio vulgaris RCH1 YjgP/YjgQ family permease YP_005702421.1 1840505 R 573059 CDS YP_005702422.1 387153486 12868097 complement(1841690..1841884) 1 NC_017310.1 KEGG: dds:Ddes_1419 hypothetical protein; hypothetical protein 1841884 12868097 Deval_1631 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702422.1 1841690 R 573059 CDS YP_005702423.1 387153487 12868098 1842094..1842891 1 NC_017310.1 KEGG: dsa:Desal_1889 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 1842891 12868098 Deval_1632 Desulfovibrio vulgaris RCH1 undecaprenol kinase YP_005702423.1 1842094 D 573059 CDS YP_005702424.1 387153488 12868100 complement(1843728..1844375) 1 NC_017310.1 KEGG: dsa:Desal_3009 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 1844375 12868100 Deval_1633 Desulfovibrio vulgaris RCH1 transaldolase YP_005702424.1 1843728 R 573059 CDS YP_005702425.1 387153489 12868101 complement(1844633..1844932) 1 NC_017310.1 KEGG: dde:Dde_1968 TRASH; hypothetical protein 1844932 12868101 Deval_1634 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702425.1 1844633 R 573059 CDS YP_005702426.1 387153490 12868102 complement(1844957..1845382) 1 NC_017310.1 KEGG: dba:Dbac_1456 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1845382 12868102 Deval_1635 Desulfovibrio vulgaris RCH1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_005702426.1 1844957 R 573059 CDS YP_005702427.1 387153491 12868103 complement(1845457..1846623) 1 NC_017310.1 KEGG: dde:Dde_1970 LL-diaminopimelate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: aminotransferase class I and II; LL-diaminopimelate aminotransferase 1846623 12868103 Deval_1636 Desulfovibrio vulgaris RCH1 LL-diaminopimelate aminotransferase YP_005702427.1 1845457 R 573059 CDS YP_005702428.1 387153492 12868104 1846816..1847781 1 NC_017310.1 KEGG: dde:Dde_1971 tyrosine recombinase XerD subunit; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase XerD 1847781 12868104 Deval_1637 Desulfovibrio vulgaris RCH1 tyrosine recombinase XerD YP_005702428.1 1846816 D 573059 CDS YP_005702429.1 387153493 12868105 1847778..1850492 1 NC_017310.1 PFAM: Polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_1972 CBS; Polynucleotide adenylyltransferase region 1850492 12868105 Deval_1638 Desulfovibrio vulgaris RCH1 Polynucleotide adenylyltransferase region YP_005702429.1 1847778 D 573059 CDS YP_005702430.1 387153494 12868106 1850579..1851079 1 NC_017310.1 PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein; histidine triad (HIT) protein 1851079 12868106 Deval_1639 Desulfovibrio vulgaris RCH1 histidine triad (HIT) protein YP_005702430.1 1850579 D 573059 CDS YP_005702431.1 387153495 12868107 1851090..1851461 1 NC_017310.1 KEGG: dde:Dde_1974 hypothetical protein; hypothetical protein 1851461 12868107 Deval_1640 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702431.1 1851090 D 573059 CDS YP_005702432.1 387153496 12868108 1851476..1852600 1 NC_017310.1 KEGG: dde:Dde_1975 hypothetical protein; hypothetical protein 1852600 12868108 Deval_1641 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702432.1 1851476 D 573059 CDS YP_005702433.1 387153497 12868109 1852764..1855481 1 NC_017310.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; KEGG: dde:Dde_1976 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; DNA mismatch repair protein MutS 1855481 12868109 Deval_1642 Desulfovibrio vulgaris RCH1 DNA mismatch repair protein MutS YP_005702433.1 1852764 D 573059 CDS YP_005702434.1 387153498 12868110 1855465..1855905 1 NC_017310.1 KEGG: dde:Dde_1977 putative lipoprotein; putative lipoprotein 1855905 12868110 Deval_1643 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005702434.1 1855465 D 573059 CDS YP_005702435.1 387153499 12868111 1855979..1857217 1 NC_017310.1 KEGG: dde:Dde_1978 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 1857217 12868111 Deval_1644 Desulfovibrio vulgaris RCH1 diaminopimelate decarboxylase YP_005702435.1 1855979 D 573059 CDS YP_005702436.1 387153500 12868112 complement(1857443..1857886) 1 NC_017310.1 manually curated; PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dma:DMR_01870 putative arsenate reductase; SMART: Protein-tyrosine phosphatase, low molecular weight; protein-tyrosine phosphatase 1857886 12868112 Deval_1645 Desulfovibrio vulgaris RCH1 protein-tyrosine phosphatase YP_005702436.1 1857443 R 573059 CDS YP_005702437.1 387153501 12868113 1858045..1858389 1 NC_017310.1 manually curated; PFAM: regulatory protein ArsR; KEGG: dde:Dde_3721 ArsR family transcriptional regulator; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 1858389 12868113 Deval_1646 Desulfovibrio vulgaris RCH1 ArsR family transcriptional regulator YP_005702437.1 1858045 D 573059 CDS YP_005702438.1 387153502 12868114 1858395..1859510 1 NC_017310.1 PFAM: permease; KEGG: hha:Hhal_0589 permease; permease 1859510 12868114 Deval_1647 Desulfovibrio vulgaris RCH1 permease YP_005702438.1 1858395 D 573059 CDS YP_005702439.1 387153503 12868118 1860636..1860953 1 NC_017310.1 KEGG: hypothetical protein; hypothetical protein 1860953 12868118 Deval_1650 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702439.1 1860636 D 573059 CDS YP_005702440.1 387153504 12868119 1860993..1861295 1 NC_017310.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: dba:Dbac_2571 plasmid maintenance system antidote protein, XRE family; SMART: helix-turn-helix domain protein; plasmid maintenance system antidote protein 1861295 12868119 Deval_1651 Desulfovibrio vulgaris RCH1 plasmid maintenance system antidote protein YP_005702440.1 1860993 D 573059 CDS YP_005702441.1 387153505 12868120 complement(1861316..1861639) 1 NC_017310.1 PFAM: Protein of unknown function DUF2590; KEGG: dds:Ddes_0254 hypothetical protein; hypothetical protein 1861639 12868120 Deval_1652 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702441.1 1861316 R 573059 CDS YP_005702442.1 387153506 12868121 1861684..1861956 1 NC_017310.1 PFAM: protein of unknown function DUF497; KEGG: dds:Ddes_0226 protein of unknown function DUF497; hypothetical protein 1861956 12868121 Deval_1653 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702442.1 1861684 D 573059 CDS YP_005702443.1 387153507 12868122 1861934..1862176 1 NC_017310.1 KEGG: dds:Ddes_0227 hypothetical protein; hypothetical protein 1862176 12868122 Deval_1654 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702443.1 1861934 D 573059 CDS YP_005702444.1 387153508 12868123 complement(1862272..1863204) 1 NC_017310.1 KEGG: vcj:VCD_002181 phage-related tail protein; hypothetical protein 1863204 12868123 Deval_1655 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702444.1 1862272 R 573059 CDS YP_005702445.1 387153509 12868124 1863410..1864006 1 NC_017310.1 PFAM: NADPH-dependent FMN reductase; KEGG: pin:Ping_0487 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1864006 12868124 Deval_1656 Desulfovibrio vulgaris RCH1 NADPH-dependent FMN reductase YP_005702445.1 1863410 D 573059 CDS YP_005702446.1 387153510 12868125 complement(1864677..1865597) 1 NC_017310.1 KEGG: dde:Dde_1778 putative manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein; inorganic diphosphatase 1865597 12868125 Deval_1657 Desulfovibrio vulgaris RCH1 inorganic diphosphatase YP_005702446.1 1864677 R 573059 CDS YP_005702447.1 387153511 12868126 complement(1865732..1866412) 1 NC_017310.1 KEGG: dde:Dde_1777 hypothetical protein; hypothetical protein 1866412 12868126 Deval_1658 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702447.1 1865732 R 573059 CDS YP_005702448.1 387153512 12868127 complement(1866429..1866890) 1 NC_017310.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component; PTS system sorbose subfamily transporter subunit IIB 1866890 12868127 Deval_1659 Desulfovibrio vulgaris RCH1 PTS system sorbose subfamily transporter subunit IIB YP_005702448.1 1866429 R 573059 CDS YP_005702449.1 387153513 12868128 complement(1866892..1867329) 1 NC_017310.1 PFAM: PTS system fructose subfamily IIA component; KEGG: dde:Dde_1775 PTS system, IIA component; PTS system fructose subfamily transporter subunit IIA 1867329 12868128 Deval_1660 Desulfovibrio vulgaris RCH1 PTS system fructose subfamily transporter subunit IIA YP_005702449.1 1866892 R 573059 CDS YP_005702450.1 387153514 12868129 complement(1867358..1868269) 1 NC_017310.1 KEGG: dde:Dde_1774 hypothetical protein; hypothetical protein 1868269 12868129 Deval_1661 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702450.1 1867358 R 573059 CDS YP_005702451.1 387153515 12868130 complement(1868278..1868727) 1 NC_017310.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 putative PTS IIA-like nitrogen-regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN 1868727 12868130 Deval_1662 Desulfovibrio vulgaris RCH1 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_005702451.1 1868278 R 573059 CDS YP_005702452.1 387153516 12868131 complement(1868737..1869276) 1 NC_017310.1 KEGG: dde:Dde_1772 SSU ribosomal protein S30P / sigma 54 modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; ribosomal subunit interface protein 1869276 12868131 Deval_1663 Desulfovibrio vulgaris RCH1 ribosomal subunit interface protein YP_005702452.1 1868737 R 573059 CDS YP_005702453.1 387153517 12868132 complement(1869335..1870765) 1 NC_017310.1 KEGG: dde:Dde_1771 sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; RNA polymerase sigma 54 subunit RpoN 1870765 12868132 Deval_1664 Desulfovibrio vulgaris RCH1 RNA polymerase sigma 54 subunit RpoN YP_005702453.1 1869335 R 573059 CDS YP_005702454.1 387153518 12868133 complement(1870909..1871634) 1 NC_017310.1 KEGG: dde:Dde_1770 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 1871634 12868133 Deval_1665 Desulfovibrio vulgaris RCH1 ABC transporter YP_005702454.1 1870909 R 573059 CDS YP_005702455.1 387153519 12868134 complement(1871631..1872221) 1 NC_017310.1 PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein; OstA family protein 1872221 12868134 Deval_1666 Desulfovibrio vulgaris RCH1 OstA family protein YP_005702455.1 1871631 R 573059 CDS YP_005702456.1 387153520 12868135 complement(1872231..1872875) 1 NC_017310.1 PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein; hypothetical protein 1872875 12868135 Deval_1667 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702456.1 1872231 R 573059 CDS YP_005702457.1 387153521 12868136 complement(1872872..1873399) 1 NC_017310.1 KEGG: dde:Dde_1767 phosphatase KdsC; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1873399 12868136 Deval_1668 Desulfovibrio vulgaris RCH1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_005702457.1 1872872 R 573059 CDS YP_005702458.1 387153522 12868137 complement(1873389..1874210) 1 NC_017310.1 KEGG: dde:Dde_1766 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase 1874210 12868137 Deval_1669 Desulfovibrio vulgaris RCH1 2-dehydro-3-deoxyphosphooctonate aldolase YP_005702458.1 1873389 R 573059 CDS YP_005702459.1 387153523 12868138 complement(1874280..1875923) 1 NC_017310.1 TIGRFAM: CTP synthase; KEGG: dde:Dde_1765 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CTP synthase 1875923 12868138 Deval_1670 Desulfovibrio vulgaris RCH1 CTP synthase YP_005702459.1 1874280 R 573059 CDS YP_005702460.1 387153524 12868139 1876180..1876989 1 NC_017310.1 KEGG: dde:Dde_1764 phosphoribosylformylglycinamidine synthase I; Phosphoribosylformylglycinamidine synthase 1876989 12868139 Deval_1671 Desulfovibrio vulgaris RCH1 Phosphoribosylformylglycinamidine synthase YP_005702460.1 1876180 D 573059 CDS YP_005702461.1 387153525 12868140 1877042..1877515 1 NC_017310.1 KEGG: dde:Dde_1763 hypothetical protein; hypothetical protein 1877515 12868140 Deval_1672 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702461.1 1877042 D 573059 CDS YP_005702462.1 387153526 12868141 1877661..1878083 1 NC_017310.1 KEGG: dal:Dalk_4092 hypothetical protein; hypothetical protein 1878083 12868141 Deval_1673 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702462.1 1877661 D 573059 CDS YP_005702463.1 387153527 12868142 complement(1878185..1878427) 1 NC_017310.1 KEGG: dsa:Desal_2490 hypothetical protein; hypothetical protein 1878427 12868142 Deval_1674 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702463.1 1878185 R 573059 CDS YP_005702464.1 387153528 12868143 complement(1878432..1879967) 1 NC_017310.1 TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: dde:Dde_1757 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; phosphoglycerate mutase 1879967 12868143 Deval_1675 Desulfovibrio vulgaris RCH1 phosphoglycerate mutase YP_005702464.1 1878432 R 573059 CDS YP_005702465.1 387153529 12868144 complement(1879964..1880368) 1 NC_017310.1 KEGG: dde:Dde_1756 iojap-related protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein 1880368 12868144 Deval_1676 Desulfovibrio vulgaris RCH1 iojap family protein YP_005702465.1 1879964 R 573059 CDS YP_005702466.1 387153530 12868145 complement(1880381..1880974) 1 NC_017310.1 PFAM: nitroreductase; KEGG: dds:Ddes_2259 nitroreductase; nitroreductase 1880974 12868145 Deval_1677 Desulfovibrio vulgaris RCH1 nitroreductase YP_005702466.1 1880381 R 573059 CDS YP_005702467.1 387153531 12868146 1881160..1882467 1 NC_017310.1 KEGG: dde:Dde_2084 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; phenylacetate--CoA ligase 1882467 12868146 Deval_1678 Desulfovibrio vulgaris RCH1 phenylacetate--CoA ligase YP_005702467.1 1881160 D 573059 CDS YP_005702468.1 387153532 12868147 complement(1882879..1883409) 1 NC_017310.1 KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 1883409 12868147 Deval_1679 Desulfovibrio vulgaris RCH1 iron-sulfur cluster-binding protein YP_005702468.1 1882879 R 573059 CDS YP_005702469.1 387153533 12868148 complement(1883423..1884481) 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2086 putative glutamate synthase subunit beta; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1884481 12868148 Deval_1680 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005702469.1 1883423 R 573059 CDS YP_005702470.1 387153534 12868149 1884703..1885134 1 NC_017310.1 PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein; amino acid-binding ACT protein 1885134 12868149 Deval_1681 Desulfovibrio vulgaris RCH1 amino acid-binding ACT protein YP_005702470.1 1884703 D 573059 CDS YP_005702471.1 387153535 12868150 1885415..1887343 1 NC_017310.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2090 molybdopterin oxidoreductase domain-containing protein; molybdopterin oxidoreductase 1887343 12868150 Deval_1682 Desulfovibrio vulgaris RCH1 molybdopterin oxidoreductase YP_005702471.1 1885415 D 573059 CDS YP_005702472.1 387153536 12868151 complement(1887520..1889199) 1 NC_017310.1 TIGRFAM: NAD+ synthetase; KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 1889199 12868151 Deval_1683 Desulfovibrio vulgaris RCH1 NAD+ synthetase YP_005702472.1 1887520 R 573059 CDS YP_005702473.1 387153537 12868152 complement(1889200..1889979) 1 NC_017310.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: dde:Dde_2092 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 1889979 12868152 Deval_1684 Desulfovibrio vulgaris RCH1 dihydrodipicolinate reductase YP_005702473.1 1889200 R 573059 CDS YP_005702474.1 387153538 12868153 complement(1890141..1892597) 1 NC_017310.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; KEGG: dde:Dde_2093 DNA ligase, NAD-dependent; SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; NAD-dependent DNA ligase 1892597 12868153 Deval_1685 Desulfovibrio vulgaris RCH1 NAD-dependent DNA ligase YP_005702474.1 1890141 R 573059 CDS YP_005702475.1 387153539 12868154 complement(1892594..1893340) 1 NC_017310.1 KEGG: dde:Dde_2094 hypothetical protein; hypothetical protein 1893340 12868154 Deval_1686 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702475.1 1892594 R 573059 CDS YP_005702476.1 387153540 12868155 complement(1893341..1894384) 1 NC_017310.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein; TrkA-N domain-containing protein 1894384 12868155 Deval_1687 Desulfovibrio vulgaris RCH1 TrkA-N domain-containing protein YP_005702476.1 1893341 R 573059 CDS YP_005702477.1 387153541 12868156 complement(1894390..1896423) 1 NC_017310.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: dde:Dde_2096 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein; excinuclease ABC subunit B 1896423 12868156 Deval_1688 Desulfovibrio vulgaris RCH1 excinuclease ABC subunit B YP_005702477.1 1894390 R 573059 CDS YP_005702478.1 387153542 12868157 1896516..1897001 1 NC_017310.1 KEGG: dde:Dde_2097 hypothetical protein; hypothetical protein 1897001 12868157 Deval_1689 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702478.1 1896516 D 573059 CDS YP_005702479.1 387153543 12868158 complement(1897008..1897712) 1 NC_017310.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: dde:Dde_2098 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 1897712 12868158 Deval_1690 Desulfovibrio vulgaris RCH1 leucyl/phenylalanyl-tRNA/protein transferase YP_005702479.1 1897008 R 573059 CDS YP_005702480.1 387153544 12868159 complement(1897709..1900039) 1 NC_017310.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: dde:Dde_2099 ATPase; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 1900039 12868159 Deval_1691 Desulfovibrio vulgaris RCH1 ATP-dependent Clp protease ATP-binding protein ClpA YP_005702480.1 1897709 R 573059 CDS YP_005702481.1 387153545 12868160 complement(1900039..1900353) 1 NC_017310.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dde:Dde_2100 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 1900353 12868160 Deval_1692 Desulfovibrio vulgaris RCH1 ATP-dependent Clp protease adaptor protein ClpS YP_005702481.1 1900039 R 573059 CDS YP_005702482.1 387153546 12868161 complement(1900444..1901055) 1 NC_017310.1 PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase; adenylate cyclase 1901055 12868161 Deval_1693 Desulfovibrio vulgaris RCH1 adenylate cyclase YP_005702482.1 1900444 R 573059 CDS YP_005702483.1 387153547 12868162 1901094..1901468 1 NC_017310.1 KEGG: dde:Dde_2102 camphor resistance protein CrcB; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein 1901468 12868162 Deval_1694 Desulfovibrio vulgaris RCH1 CrcB protein YP_005702483.1 1901094 D 573059 CDS YP_005702484.1 387153548 12868163 1901513..1901857 1 NC_017310.1 PFAM: protein of unknown function DUF190; KEGG: dde:Dde_2103 hypothetical protein; hypothetical protein 1901857 12868163 Deval_1695 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702484.1 1901513 D 573059 CDS YP_005702485.1 387153549 12868164 complement(1902060..1902197) 1 NC_017310.1 hypothetical protein 1902197 12868164 Deval_1696 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702485.1 1902060 R 573059 CDS YP_005702486.1 387153550 12868165 complement(1902253..1902909) 1 NC_017310.1 KEGG: dma:DMR_21020 sulfite reductase; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite reductase (NAD(P)H) 1902909 12868165 Deval_1697 Desulfovibrio vulgaris RCH1 nitrite reductase (NAD(P)H) YP_005702486.1 1902253 R 573059 CDS YP_005702487.1 387153551 12868166 complement(1902933..1904006) 1 NC_017310.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_2104 response regulator receiver domain-containing protein; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase 1904006 12868166 Deval_1698 Desulfovibrio vulgaris RCH1 response regulator receiver modulated CheB methylesterase YP_005702487.1 1902933 R 573059 CDS YP_005702488.1 387153552 12868167 complement(1904009..1904908) 1 NC_017310.1 PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_2105 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR 1904908 12868167 Deval_1699 Desulfovibrio vulgaris RCH1 chemotaxis protein CheR YP_005702488.1 1904009 R 573059 CDS YP_005702489.1 387153553 12868168 complement(1904908..1907034) 1 NC_017310.1 KEGG: dde:Dde_2106 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; CheA signal transduction histidine kinase 1907034 12868168 Deval_1700 Desulfovibrio vulgaris RCH1 CheA signal transduction histidine kinase YP_005702489.1 1904908 R 573059 CDS YP_005702490.1 387153554 12868169 complement(1907102..1907464) 1 NC_017310.1 KEGG: dba:Dbac_1417 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 1907464 12868169 Deval_1701 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005702490.1 1907102 R 573059 CDS YP_005702491.1 387153555 12868170 complement(1907491..1909233) 1 NC_017310.1 KEGG: dde:Dde_2108 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1909233 12868170 Deval_1702 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005702491.1 1907491 R 573059 CDS YP_005702492.1 387153556 12868171 complement(1909550..1910920) 1 NC_017310.1 KEGG: dde:Dde_2110 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein RadA 1910920 12868171 Deval_1703 Desulfovibrio vulgaris RCH1 DNA repair protein RadA YP_005702492.1 1909550 R 573059 CDS YP_005702493.1 387153557 12868172 complement(1910933..1911721) 1 NC_017310.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: lip:LI0615 hypothetical protein; hypothetical protein 1911721 12868172 Deval_1704 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702493.1 1910933 R 573059 CDS YP_005702494.1 387153558 12866287 complement(1911752..1912282) 1 NC_017310.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 1912282 12866287 Deval_1705 Desulfovibrio vulgaris RCH1 hypoxanthine phosphoribosyltransferase YP_005702494.1 1911752 R 573059 CDS YP_005702495.1 387153559 12866288 complement(1912363..1912827) 1 NC_017310.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dba:Dbac_1857 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1912827 12866288 Deval_1706 Desulfovibrio vulgaris RCH1 N-acetyltransferase GCN5 YP_005702495.1 1912363 R 573059 CDS YP_005702496.1 387153560 12866289 complement(1912827..1913294) 1 NC_017310.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2114 thioredoxin family protein; alkyl hydroperoxide reductase 1913294 12866289 Deval_1707 Desulfovibrio vulgaris RCH1 alkyl hydroperoxide reductase YP_005702496.1 1912827 R 573059 CDS YP_005702497.1 387153561 12866290 complement(1913321..1915735) 1 NC_017310.1 PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent); homocysteine S-methyltransferase 1915735 12866290 Deval_1708 Desulfovibrio vulgaris RCH1 homocysteine S-methyltransferase YP_005702497.1 1913321 R 573059 CDS YP_005702498.1 387153562 12866291 1915941..1917011 1 NC_017310.1 KEGG: dde:Dde_2116 sigma 70 family protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; sigma-70 family RNA polymerase sigma factor 1917011 12866291 Deval_1709 Desulfovibrio vulgaris RCH1 sigma-70 family RNA polymerase sigma factor YP_005702498.1 1915941 D 573059 CDS YP_005702499.1 387153563 12866292 1917026..1918714 1 NC_017310.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2117 TPR repeat-containing protein; hypothetical protein 1918714 12866292 Deval_1710 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702499.1 1917026 D 573059 CDS YP_005702500.1 387153564 12866293 1918711..1919550 1 NC_017310.1 KEGG: dds:Ddes_1445 hypothetical protein; hypothetical protein 1919550 12866293 Deval_1711 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702500.1 1918711 D 573059 CDS YP_005702501.1 387153565 12866294 1919565..1919915 1 NC_017310.1 KEGG: drt:Dret_0853 hypothetical protein; hypothetical protein 1919915 12866294 Deval_1712 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702501.1 1919565 D 573059 CDS YP_005702502.1 387153566 12866295 1919929..1920372 1 NC_017310.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: dde:Dde_2120 ribose-5-phosphate isomerase; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 1920372 12866295 Deval_1713 Desulfovibrio vulgaris RCH1 RpiB/LacA/LacB family sugar-phosphate isomerase YP_005702502.1 1919929 D 573059 CDS YP_005702503.1 387153567 12866296 1920389..1921846 1 NC_017310.1 TIGRFAM: cysteinyl-tRNA synthetase; KEGG: dde:Dde_2121 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; cysteinyl-tRNA synthetase 1921846 12866296 Deval_1714 Desulfovibrio vulgaris RCH1 cysteinyl-tRNA synthetase YP_005702503.1 1920389 D 573059 CDS YP_005702504.1 387153568 12866297 1921852..1923297 1 NC_017310.1 KEGG: dde:Dde_2122 TPR repeat-containing protein; PFAM: peptidase M48 Ste24p; SMART: Tetratricopeptide repeat; peptidase M48 Ste24p 1923297 12866297 Deval_1715 Desulfovibrio vulgaris RCH1 peptidase M48 Ste24p YP_005702504.1 1921852 D 573059 CDS YP_005702505.1 387153569 12866298 complement(1923273..1923422) 1 NC_017310.1 hypothetical protein 1923422 12866298 Deval_1716 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702505.1 1923273 R 573059 CDS YP_005702506.1 387153570 12866299 1923459..1924004 1 NC_017310.1 PFAM: 20S proteasome A and B subunits; KEGG: dde:Dde_2124 ATP-dependent protease peptidase subunit; 20S proteasome A and B subunits 1924004 12866299 Deval_1717 Desulfovibrio vulgaris RCH1 20S proteasome A and B subunits YP_005702506.1 1923459 D 573059 CDS YP_005702507.1 387153571 12866300 1924001..1924861 1 NC_017310.1 KEGG: dde:Dde_2125 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1924861 12866300 Deval_1718 Desulfovibrio vulgaris RCH1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_005702507.1 1924001 D 573059 CDS YP_005702508.1 387153572 12866302 1924983..1925921 1 NC_017310.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: dde:Dde_2126 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 1925921 12866302 Deval_1719 Desulfovibrio vulgaris RCH1 ribose-phosphate pyrophosphokinase YP_005702508.1 1924983 D 573059 CDS YP_005702509.1 387153573 12866303 1925971..1926543 1 NC_017310.1 KEGG: dds:Ddes_1452 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 1926543 12866303 Deval_1720 Desulfovibrio vulgaris RCH1 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_005702509.1 1925971 D 573059 CDS YP_005702510.1 387153574 12866304 1926658..1927263 1 NC_017310.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: dde:Dde_2128 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1927263 12866304 Deval_1721 Desulfovibrio vulgaris RCH1 peptidyl-tRNA hydrolase YP_005702510.1 1926658 D 573059 CDS YP_005702511.1 387153575 12866305 1927378..1927893 1 NC_017310.1 PFAM: transcription factor CarD; KEGG: dde:Dde_2129 CarD family transcriptional regulator; CarD family transcriptional regulator 1927893 12866305 Deval_1722 Desulfovibrio vulgaris RCH1 CarD family transcriptional regulator YP_005702511.1 1927378 D 573059 CDS YP_005702512.1 387153576 12866306 1928220..1929470 1 NC_017310.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: dde:Dde_2130 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase; transcription termination factor Rho 1929470 12866306 Deval_1723 Desulfovibrio vulgaris RCH1 transcription termination factor Rho YP_005702512.1 1928220 D 573059 CDS YP_005702513.1 387153577 12866307 complement(1929925..1930779) 1 NC_017310.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; KEGG: dde:Dde_1793 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta 1930779 12866307 Deval_1724 Desulfovibrio vulgaris RCH1 pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta YP_005702513.1 1929925 R 573059 CDS YP_005702514.1 387153578 12866308 complement(1930776..1932512) 1 NC_017310.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1932512 12866308 Deval_1725 Desulfovibrio vulgaris RCH1 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_005702514.1 1930776 R 573059 CDS YP_005702515.1 387153579 12866309 complement(1932585..1933094) 1 NC_017310.1 KEGG: dde:Dde_1791 ferritin; PFAM: Ferritin Dps family protein; ferroxidase 1933094 12866309 Deval_1726 Desulfovibrio vulgaris RCH1 ferroxidase YP_005702515.1 1932585 R 573059 CDS YP_005702516.1 387153580 12866310 1933258..1933470 1 NC_017310.1 KEGG: dde:Dde_1790 hypothetical protein; hypothetical protein 1933470 12866310 Deval_1727 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702516.1 1933258 D 573059 CDS YP_005702517.1 387153581 12866311 complement(1933480..1934154) 1 NC_017310.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dba:Dbac_0931 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 1934154 12866311 Deval_1728 Desulfovibrio vulgaris RCH1 phosphoadenosine phosphosulfate reductase YP_005702517.1 1933480 R 573059 CDS YP_005702518.1 387153582 12866312 1934231..1934668 1 NC_017310.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sfu:Sfum_0223 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1934668 12866312 Deval_1729 Desulfovibrio vulgaris RCH1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_005702518.1 1934231 D 573059 CDS YP_005702519.1 387153583 12866316 1935133..1935483 1 NC_017310.1 KEGG: cqu:CpipJ_CPIJ016529 beadex; hypothetical protein 1935483 12866316 Deval_1730 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702519.1 1935133 D 573059 CDS YP_005702520.1 387153584 12866317 complement(1935680..1938799) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; response regulator receiver; KEGG: dba:Dbac_1424 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor hybrid histidine kinase 1938799 12866317 Deval_1731 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005702520.1 1935680 R 573059 CDS YP_005702521.1 387153585 12866318 1939054..1941948 1 NC_017310.1 KEGG: app:CAP2UW1_3853 metal dependent phosphohydrolase; PFAM: GAF domain protein; histidine kinase HAMP region domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1941948 12866318 Deval_1732 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005702521.1 1939054 D 573059 CDS YP_005702522.1 387153586 12866319 complement(1942007..1942378) 1 NC_017310.1 PFAM: regulatory protein LysR; KEGG: dde:Dde_3521 Fis family transcriptional regulator; putative ModE family transcriptional regulator 1942378 12866319 Deval_1733 Desulfovibrio vulgaris RCH1 putative ModE family transcriptional regulator YP_005702522.1 1942007 R 573059 CDS YP_005702523.1 387153587 12866320 1942609..1943628 1 NC_017310.1 PFAM: molybdopterin binding domain; KEGG: dde:Dde_3538 molybdenum cofactor cytidylyltransferase; molybdopterin binding domain-containing protein 1943628 12866320 Deval_1734 Desulfovibrio vulgaris RCH1 molybdopterin binding domain-containing protein YP_005702523.1 1942609 D 573059 CDS YP_005702524.1 387153588 12866321 1943747..1946467 1 NC_017310.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; [2Fe-2S]-binding domain-containing protein; ferredoxin; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 1946467 12866321 Deval_1735 Desulfovibrio vulgaris RCH1 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_005702524.1 1943747 D 573059 CDS YP_005702525.1 387153589 12866322 1946538..1948931 1 NC_017310.1 PFAM: glucose-inhibited division protein A; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3540 aldehyde dehydrogenase, iron-sulfur subunit; glucose-inhibited division protein A 1948931 12866322 Deval_1736 Desulfovibrio vulgaris RCH1 glucose-inhibited division protein A YP_005702525.1 1946538 D 573059 CDS YP_005702526.1 387153590 12866323 1948928..1949143 1 NC_017310.1 KEGG: dsa:Desal_0297 hypothetical protein; hypothetical protein 1949143 12866323 Deval_1737 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702526.1 1948928 D 573059 CDS YP_005702527.1 387153591 12866324 1949140..1950045 1 NC_017310.1 PFAM: Methyltransferase type 11; KEGG: dde:Dde_3542 ubiquinone/menaquinone biosynthesis methylase-like protein; type 11 methyltransferase 1950045 12866324 Deval_1738 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005702527.1 1949140 D 573059 CDS YP_005702528.1 387153592 12866325 1950050..1950502 1 NC_017310.1 PFAM: C_GCAxxG_C_C family protein; KEGG: dde:Dde_3543 hypothetical protein; C_GCAxxG_C_C family protein 1950502 12866325 Deval_1739 Desulfovibrio vulgaris RCH1 C_GCAxxG_C_C family protein YP_005702528.1 1950050 D 573059 CDS YP_005702529.1 387153593 12866326 1950502..1952133 1 NC_017310.1 KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 1952133 12866326 Deval_1740 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005702529.1 1950502 D 573059 CDS YP_005702530.1 387153594 12866327 1952130..1953479 1 NC_017310.1 KEGG: dde:Dde_3545 coenzyme F390 synthetase-like; manually curated; PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1953479 12866327 Deval_1741 Desulfovibrio vulgaris RCH1 AMP-dependent synthetase and ligase YP_005702530.1 1952130 D 573059 CDS YP_005702531.1 387153595 12866328 1953497..1954627 1 NC_017310.1 PFAM: protein of unknown function DUF182; KEGG: dde:Dde_3546 xanthine dehydrogenase accessory factor; hypothetical protein 1954627 12866328 Deval_1742 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702531.1 1953497 D 573059 CDS YP_005702532.1 387153596 12866329 1954765..1956192 1 NC_017310.1 KEGG: dde:Dde_3547 MobA-like protein-like; PFAM: metal-dependent phosphohydrolase HD sub domain; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1956192 12866329 Deval_1743 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005702532.1 1954765 D 573059 CDS YP_005702533.1 387153597 12866330 1956256..1956906 1 NC_017310.1 PFAM: Phosphoglycerate mutase; KEGG: dde:Dde_3550 fructose-2 6-bisphosphatase-like protein; phosphoglycerate mutase 1956906 12866330 Deval_1744 Desulfovibrio vulgaris RCH1 phosphoglycerate mutase YP_005702533.1 1956256 D 573059 CDS YP_005702534.1 387153598 12866331 complement(1956988..1957740) 1 NC_017310.1 PFAM: Methyltransferase type 11; KEGG: mem:Memar_0889 methyltransferase type 11; type 11 methyltransferase 1957740 12866331 Deval_1745 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005702534.1 1956988 R 573059 CDS YP_005702535.1 387153599 12866332 complement(1958040..1959254) 1 NC_017310.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dba:Dbac_1993 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 1959254 12866332 Deval_1746 Desulfovibrio vulgaris RCH1 aromatic hydrocarbon degradation membrane protein YP_005702535.1 1958040 R 573059 CDS YP_005702536.1 387153600 12866333 1959405..1961030 1 NC_017310.1 PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; PAS fold-3 domain protein; KEGG: dba:Dbac_1994 putative PAS/PAC sensor protein; CI repressor 1961030 12866333 Deval_1747 Desulfovibrio vulgaris RCH1 CI repressor YP_005702536.1 1959405 D 573059 CDS YP_005702537.1 387153601 12866334 1961312..1961428 1 NC_017310.1 hypothetical protein 1961428 12866334 Deval_1748 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702537.1 1961312 D 573059 CDS YP_005702538.1 387153602 12866335 1961425..1968741 1 NC_017310.1 KEGG: azl:AZL_c04560 hemolysin-type calcium-binding region; hypothetical protein 1968741 12866335 Deval_1749 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702538.1 1961425 D 573059 CDS YP_005702539.1 387153603 12866336 1968981..1971404 1 NC_017310.1 PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 1971404 12866336 Deval_1750 Desulfovibrio vulgaris RCH1 mechanosensitive ion channel protein MscS YP_005702539.1 1968981 D 573059 CDS YP_005702540.1 387153604 12866337 complement(1971709..1974252) 1 NC_017310.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; helicase-associated domain protein; KEGG: mag:amb1260 HrpA-like helicase; SMART: helicase-associated domain protein; DEAD-like helicase ; helicase domain protein; ATP-dependent helicase HrpB 1974252 12866337 Deval_1751 Desulfovibrio vulgaris RCH1 ATP-dependent helicase HrpB YP_005702540.1 1971709 R 573059 CDS YP_005702541.1 387153605 12866338 1974461..1974688 1 NC_017310.1 KEGG: putative signal peptide protein; hypothetical protein 1974688 12866338 Deval_1752 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702541.1 1974461 D 573059 CDS YP_005702542.1 387153606 12866339 1974866..1975267 1 NC_017310.1 KEGG: dwi:Dwil_GK21172 GK21172 gene product from transcript GK21172-RA; hypothetical protein 1975267 12866339 Deval_1753 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702542.1 1974866 D 573059 CDS YP_005702543.1 387153607 12866340 1975373..1976227 1 NC_017310.1 KEGG: azl:AZL_a03620 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; formyltetrahydrofolate deformylase 1976227 12866340 Deval_1754 Desulfovibrio vulgaris RCH1 formyltetrahydrofolate deformylase YP_005702543.1 1975373 D 573059 CDS YP_005702544.1 387153608 12866341 1976419..1977402 1 NC_017310.1 TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: dde:Dde_1796 fructose 1,6-bisphosphatase II; PFAM: GlpX family protein; fructose-1,6-bisphosphatase 1977402 12866341 Deval_1755 Desulfovibrio vulgaris RCH1 fructose-1,6-bisphosphatase YP_005702544.1 1976419 D 573059 CDS YP_005702545.1 387153609 12866342 1977505..1978029 1 NC_017310.1 KEGG: dde:Dde_1795 hypothetical protein; hypothetical protein 1978029 12866342 Deval_1756 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702545.1 1977505 D 573059 CDS YP_005702546.1 387153610 12866343 complement(1978293..1978859) 1 NC_017310.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: dds:Ddes_2078 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 1978859 12866343 Deval_1757 Desulfovibrio vulgaris RCH1 outer membrane chaperone Skp YP_005702546.1 1978293 R 573059 CDS YP_005702547.1 387153611 12866344 complement(1978989..1980119) 1 NC_017310.1 PFAM: Lytic transglycosylase catalytic; KEGG: dds:Ddes_2079 lytic transglycosylase catalytic; lytic transglycosylase 1980119 12866344 Deval_1758 Desulfovibrio vulgaris RCH1 lytic transglycosylase YP_005702547.1 1978989 R 573059 CDS YP_005702548.1 387153612 12866345 complement(1980250..1980771) 1 NC_017310.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_3014 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 1980771 12866345 Deval_1759 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702548.1 1980250 R 573059 CDS YP_005702549.1 387153613 12866346 complement(1980771..1981283) 1 NC_017310.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pca:Pcar_2856 hypothetical protein; hypothetical protein 1981283 12866346 Deval_1760 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702549.1 1980771 R 573059 CDS YP_005702550.1 387153614 12866347 complement(1981433..1982362) 1 NC_017310.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dde:Dde_1784 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1982362 12866347 Deval_1761 Desulfovibrio vulgaris RCH1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_005702550.1 1981433 R 573059 CDS YP_005702551.1 387153615 12866348 complement(1982359..1982919) 1 NC_017310.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dde:Dde_1783 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 1982919 12866348 Deval_1762 Desulfovibrio vulgaris RCH1 pantetheine-phosphate adenylyltransferase YP_005702551.1 1982359 R 573059 CDS YP_005702552.1 387153616 12866349 complement(1982895..1983467) 1 NC_017310.1 KEGG: dde:Dde_1782 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein CHP00095; methyltransferase 1983467 12866349 Deval_1763 Desulfovibrio vulgaris RCH1 methyltransferase YP_005702552.1 1982895 R 573059 CDS YP_005702553.1 387153617 12866350 complement(1983593..1985203) 1 NC_017310.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase 1985203 12866350 Deval_1764 Desulfovibrio vulgaris RCH1 RNA-metabolising metallo-beta-lactamase YP_005702553.1 1983593 R 573059 CDS YP_005702554.1 387153618 12866351 1985340..1985996 1 NC_017310.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: dde:Dde_1780 hypothetical protein; hypothetical protein 1985996 12866351 Deval_1765 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702554.1 1985340 D 573059 CDS YP_005702555.1 387153619 12866352 1986058..1986702 1 NC_017310.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: lip:LI0343 cytosine/adenosine deaminases; CMP/dCMP deaminase zinc-binding protein 1986702 12866352 Deval_1766 Desulfovibrio vulgaris RCH1 CMP/dCMP deaminase zinc-binding protein YP_005702555.1 1986058 D 573059 CDS YP_005702556.1 387153620 12866354 1987316..1988509 1 NC_017310.1 PFAM: integrase family protein; KEGG: drt:Dret_1610 integrase family protein; integrase family protein 1988509 12866354 Deval_1767 Desulfovibrio vulgaris RCH1 integrase family protein YP_005702556.1 1987316 D 573059 CDS YP_005702557.1 387153621 12866355 complement(1988448..1988756) 1 NC_017310.1 PFAM: Prophage CP4-57 regulatory; KEGG: ddf:DEFDS_0278 transcriptional regulator; Prophage CP4-57 regulatory protein 1988756 12866355 Deval_1768 Desulfovibrio vulgaris RCH1 Prophage CP4-57 regulatory protein YP_005702557.1 1988448 R 573059 CDS YP_005702558.1 387153622 12866356 complement(1989088..1990080) 1 NC_017310.1 KEGG: sus:Acid_0929 hypothetical protein; hypothetical protein 1990080 12866356 Deval_1769 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702558.1 1989088 R 573059 CDS YP_005702559.1 387153623 12866357 complement(1990100..1990996) 1 NC_017310.1 PFAM: protein of unknown function DUF1351; KEGG: cbb:CLD_2425 hypothetical protein; hypothetical protein 1990996 12866357 Deval_1770 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702559.1 1990100 R 573059 CDS YP_005702560.1 387153624 12866358 complement(1990999..1992027) 1 NC_017310.1 KEGG: gsu:GSU2152 hypothetical protein; hypothetical protein 1992027 12866358 Deval_1771 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702560.1 1990999 R 573059 CDS YP_005702561.1 387153625 12866359 complement(1992073..1992369) 1 NC_017310.1 KEGG: cef:CE2282 valyl-tRNA synthetase; hypothetical protein 1992369 12866359 Deval_1772 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702561.1 1992073 R 573059 CDS YP_005702562.1 387153626 12866360 complement(1992372..1992521) 1 NC_017310.1 hypothetical protein 1992521 12866360 Deval_1773 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702562.1 1992372 R 573059 CDS YP_005702563.1 387153627 12866361 complement(1993067..1994053) 1 NC_017310.1 KEGG: saf:SULAZ_1348 flagellum-specific ATP synthase; hypothetical protein 1994053 12866361 Deval_1774 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702563.1 1993067 R 573059 CDS YP_005702564.1 387153628 12866362 complement(1994111..1994764) 1 NC_017310.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: dsa:Desal_3112 putative phage repressor; putative phage repressor 1994764 12866362 Deval_1775 Desulfovibrio vulgaris RCH1 putative phage repressor YP_005702564.1 1994111 R 573059 CDS YP_005702565.1 387153629 12866363 1994821..1995111 1 NC_017310.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: sto:ST2084 transcriptional regulator; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1995111 12866363 Deval_1776 Desulfovibrio vulgaris RCH1 helix-turn-helix domain-containing protein YP_005702565.1 1994821 D 573059 CDS YP_005702566.1 387153630 12866364 1995322..1995735 1 NC_017310.1 KEGG: dma:DMR_05660 hypothetical protein; hypothetical protein 1995735 12866364 Deval_1777 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702566.1 1995322 D 573059 CDS YP_005702567.1 387153631 12866365 1995735..1996091 1 NC_017310.1 KEGG: rci:RCIX1121 DNA polymerase II small subunit; hypothetical protein 1996091 12866365 Deval_1778 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702567.1 1995735 D 573059 CDS YP_005702568.1 387153632 12866366 1996288..1997757 1 NC_017310.1 KEGG: bte:BTH_II1364 DNA methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 1997757 12866366 Deval_1779 Desulfovibrio vulgaris RCH1 DNA-cytosine methyltransferase YP_005702568.1 1996288 D 573059 CDS YP_005702569.1 387153633 12866367 1998736..1999143 1 NC_017310.1 KEGG: azl:AZL_c00010 hypothetical protein; hypothetical protein 1999143 12866367 Deval_1780 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702569.1 1998736 D 573059 CDS YP_005702570.1 387153634 12866368 1999140..1999634 1 NC_017310.1 KEGG: bmj:BMULJ_04647 bacteriophage protein; hypothetical protein 1999634 12866368 Deval_1781 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702570.1 1999140 D 573059 CDS YP_005702571.1 387153635 12866369 1999621..1999881 1 NC_017310.1 KEGG: cim:CIMG_05837 hypothetical protein; hypothetical protein 1999881 12866369 Deval_1782 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702571.1 1999621 D 573059 CDS YP_005702572.1 387153636 12866370 2000223..2000786 1 NC_017310.1 KEGG: ddf:DEFDS_0627 hypothetical protein; hypothetical protein 2000786 12866370 Deval_1783 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702572.1 2000223 D 573059 CDS YP_005702573.1 387153637 12866371 2001332..2001739 1 NC_017310.1 KEGG: mag:amb1193 hypothetical protein; hypothetical protein 2001739 12866371 Deval_1784 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702573.1 2001332 D 573059 CDS YP_005702574.1 387153638 12866372 2001739..2002089 1 NC_017310.1 KEGG: dds:Ddes_0722 hypothetical protein; hypothetical protein 2002089 12866372 Deval_1785 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702574.1 2001739 D 573059 CDS YP_005702575.1 387153639 12866373 2002086..2002334 1 NC_017310.1 KEGG: sme:SMc01942 urease accessory protein; hypothetical protein 2002334 12866373 Deval_1786 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702575.1 2002086 D 573059 CDS YP_005702576.1 387153640 12866374 2002354..2002752 1 NC_017310.1 KEGG: bpm:BURPS1710b_1677 GP70; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 2002752 12866374 Deval_1787 Desulfovibrio vulgaris RCH1 HNH endonuclease YP_005702576.1 2002354 D 573059 CDS YP_005702577.1 387153641 12866375 2002836..2003303 1 NC_017310.1 KEGG: rsh:Rsph17029_0646 P27 family phage terminase small subunit; manually curated; TIGRFAM: phage terminase, small subunit, , P27 family; phage terminase, small subunit, , P27 family 2003303 12866375 Deval_1788 Desulfovibrio vulgaris RCH1 phage terminase, small subunit, , P27 family YP_005702577.1 2002836 D 573059 CDS YP_005702578.1 387153642 12866376 2003308..2005005 1 NC_017310.1 PFAM: Terminase; KEGG: bph:Bphy_7140 terminase; terminase 2005005 12866376 Deval_1789 Desulfovibrio vulgaris RCH1 terminase YP_005702578.1 2003308 D 573059 CDS YP_005702579.1 387153643 12866377 2005005..2006264 1 NC_017310.1 KEGG: pmy:Pmen_3972 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; phage portal protein, HK97 family 2006264 12866377 Deval_1790 Desulfovibrio vulgaris RCH1 phage portal protein, HK97 family YP_005702579.1 2005005 D 573059 CDS YP_005702580.1 387153644 12866378 2006257..2006991 1 NC_017310.1 PFAM: peptidase S14 ClpP; KEGG: lhk:LHK_01773 ATP-dependent Clp protease proteolytic subunit; peptidase S14 ClpP 2006991 12866378 Deval_1791 Desulfovibrio vulgaris RCH1 peptidase S14 ClpP YP_005702580.1 2006257 D 573059 CDS YP_005702581.1 387153645 12866379 2006988..2007101 1 NC_017310.1 hypothetical protein 2007101 12866379 Deval_1792 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702581.1 2006988 D 573059 CDS YP_005702582.1 387153646 12866380 2007196..2008392 1 NC_017310.1 TIGRFAM: phage major capsid protein, HK97 family; KEGG: mno:Mnod_7329 phage major capsid protein, HK97 family; phage major capsid protein, HK97 family 2008392 12866380 Deval_1793 Desulfovibrio vulgaris RCH1 phage major capsid protein, HK97 family YP_005702582.1 2007196 D 573059 CDS YP_005702583.1 387153647 12866381 2008438..2008707 1 NC_017310.1 KEGG: uma:UM02528.1 hypothetical protein; hypothetical protein 2008707 12866381 Deval_1794 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702583.1 2008438 D 573059 CDS YP_005702584.1 387153648 12866382 2008711..2009268 1 NC_017310.1 KEGG: smd:Smed_1332 phiE125 gp8 hypothetical protein; hypothetical protein 2009268 12866382 Deval_1795 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702584.1 2008711 D 573059 CDS YP_005702585.1 387153649 12866383 2009268..2009594 1 NC_017310.1 TIGRFAM: phage head-tail adaptor; KEGG: aap:NT05HA_0498 phage head-tail adaptor, putative; phage head-tail adaptor 2009594 12866383 Deval_1796 Desulfovibrio vulgaris RCH1 phage head-tail adaptor YP_005702585.1 2009268 D 573059 CDS YP_005702586.1 387153650 12866384 2009587..2010084 1 NC_017310.1 KEGG: nar:Saro_2417 beta-N-acetylhexosaminidase; hypothetical protein 2010084 12866384 Deval_1797 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702586.1 2009587 D 573059 CDS YP_005702587.1 387153651 12866385 2010087..2010473 1 NC_017310.1 PFAM: Protein of unknown function DUF3168; KEGG: cko:CKO_01026 D-cysteine desulfhydrase; hypothetical protein 2010473 12866385 Deval_1798 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702587.1 2010087 D 573059 CDS YP_005702588.1 387153652 12866386 2010485..2011648 1 NC_017310.1 KEGG: mno:Mnod_5059 hypothetical protein; hypothetical protein 2011648 12866386 Deval_1799 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702588.1 2010485 D 573059 CDS YP_005702589.1 387153653 12866387 2011657..2012040 1 NC_017310.1 KEGG: cbr:CBG07119 Hypothetical protein CBG07119; hypothetical protein 2012040 12866387 Deval_1800 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702589.1 2011657 D 573059 CDS YP_005702590.1 387153654 12866388 2012202..2012384 1 NC_017310.1 KEGG: ani:AN9354.2 hypothetical protein; hypothetical protein 2012384 12866388 Deval_1801 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702590.1 2012202 D 573059 CDS YP_005702591.1 387153655 12866389 complement(2012460..2012864) 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0150; KEGG: dde:Dde_3760 hypothetical protein; hypothetical protein 2012864 12866389 Deval_1802 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702591.1 2012460 R 573059 CDS YP_005702592.1 387153656 12866390 complement(2012913..2013095) 1 NC_017310.1 PFAM: YcfA family protein; KEGG: YcfA family protein; hypothetical protein 2013095 12866390 Deval_1803 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702592.1 2012913 R 573059 CDS YP_005702593.1 387153657 12866391 2013268..2016066 1 NC_017310.1 TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein; phage tape measure protein 2016066 12866391 Deval_1804 Desulfovibrio vulgaris RCH1 phage tape measure protein YP_005702593.1 2013268 D 573059 CDS YP_005702594.1 387153658 12866392 2016069..2016419 1 NC_017310.1 hypothetical protein 2016419 12866392 Deval_1805 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702594.1 2016069 D 573059 CDS YP_005702595.1 387153659 12866393 2016423..2017328 1 NC_017310.1 KEGG: protein of unknown function DUF58; hypothetical protein 2017328 12866393 Deval_1806 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702595.1 2016423 D 573059 CDS YP_005702596.1 387153660 12866394 2017318..2017746 1 NC_017310.1 KEGG: bvi:Bcep1808_3223 hypothetical protein; hypothetical protein 2017746 12866394 Deval_1807 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702596.1 2017318 D 573059 CDS YP_005702597.1 387153661 12866395 2017733..2020480 1 NC_017310.1 KEGG: bvi:Bcep1808_3222 hypothetical protein; hypothetical protein 2020480 12866395 Deval_1808 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702597.1 2017733 D 573059 CDS YP_005702598.1 387153662 12866396 2020480..2021112 1 NC_017310.1 KEGG: apb:SAR116_2344 hypothetical protein; hypothetical protein 2021112 12866396 Deval_1809 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702598.1 2020480 D 573059 CDS YP_005702599.1 387153663 12866397 2021115..2021453 1 NC_017310.1 KEGG: apb:SAR116_2345 hypothetical protein; hypothetical protein 2021453 12866397 Deval_1810 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702599.1 2021115 D 573059 CDS YP_005702600.1 387153664 12866398 2021446..2021955 1 NC_017310.1 KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 2021955 12866398 Deval_1811 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702600.1 2021446 D 573059 CDS YP_005702601.1 387153665 12866399 2022588..2023088 1 NC_017310.1 KEGG: dma:DMR_41750 putative nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); nuclease 2023088 12866399 Deval_1812 Desulfovibrio vulgaris RCH1 nuclease YP_005702601.1 2022588 D 573059 CDS YP_005702602.1 387153666 12866400 complement(2023147..2023506) 1 NC_017310.1 KEGG: glo:Glov_1975 hypothetical protein; hypothetical protein 2023506 12866400 Deval_1813 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702602.1 2023147 R 573059 CDS YP_005702603.1 387153667 12866401 complement(2023547..2024554) 1 NC_017310.1 PFAM: Domain of unknown function DUF1848; KEGG: pdi:BDI_1313 hypothetical protein; hypothetical protein 2024554 12866401 Deval_1814 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702603.1 2023547 R 573059 CDS YP_005702604.1 387153668 12866402 complement(2024563..2025459) 1 NC_017310.1 KEGG: mac:MA0385 cobaltochelatase subunit CobN; hypothetical protein 2025459 12866402 Deval_1815 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702604.1 2024563 R 573059 CDS YP_005702605.1 387153669 12866403 complement(2025485..2026105) 1 NC_017310.1 KEGG: ecb:100064948 similar to T-complex protein 1; hypothetical protein 2026105 12866403 Deval_1816 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702605.1 2025485 R 573059 CDS YP_005702606.1 387153670 12866404 complement(2026977..2027654) 1 NC_017310.1 KEGG: dba:Dbac_2659 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 2027654 12866404 Deval_1817 Desulfovibrio vulgaris RCH1 phosphate uptake regulator PhoU YP_005702606.1 2026977 R 573059 CDS YP_005702607.1 387153671 12866405 2028094..2028342 1 NC_017310.1 KEGG: dde:Dde_2006 hypothetical protein; hypothetical protein 2028342 12866405 Deval_1818 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702607.1 2028094 D 573059 CDS YP_005702608.1 387153672 12866406 complement(2028664..2031111) 1 NC_017310.1 KEGG: dde:Dde_2007 ATP-dependent protease, putative; ATP-dependent protease 2031111 12866406 Deval_1819 Desulfovibrio vulgaris RCH1 ATP-dependent protease YP_005702608.1 2028664 R 573059 CDS YP_005702609.1 387153673 12866407 complement(2031126..2031554) 1 NC_017310.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_2008 HSP20 family protein; heat shock protein Hsp20 2031554 12866407 Deval_1820 Desulfovibrio vulgaris RCH1 heat shock protein Hsp20 YP_005702609.1 2031126 R 573059 CDS YP_005702610.1 387153674 12866408 complement(2031627..2031911) 1 NC_017310.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gur:Gura_0254 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2031911 12866408 Deval_1821 Desulfovibrio vulgaris RCH1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_005702610.1 2031627 R 573059 CDS YP_005702611.1 387153675 12866409 2032065..2033528 1 NC_017310.1 PFAM: RNA binding S1 domain protein; KEGG: dds:Ddes_1207 RNA binding S1 domain protein; RNA binding S1 domain-containing protein 2033528 12866409 Deval_1822 Desulfovibrio vulgaris RCH1 RNA binding S1 domain-containing protein YP_005702611.1 2032065 D 573059 CDS YP_005702612.1 387153676 12866410 2033689..2035137 1 NC_017310.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: dde:Dde_2013 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 2035137 12866410 Deval_1823 Desulfovibrio vulgaris RCH1 protease Do YP_005702612.1 2033689 D 573059 CDS YP_005702613.1 387153677 12866411 2035249..2036574 1 NC_017310.1 TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: dde:Dde_2014 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU 2036574 12866411 Deval_1824 Desulfovibrio vulgaris RCH1 heat shock protein HslVU, ATPase subunit HslU YP_005702613.1 2035249 D 573059 CDS YP_005702614.1 387153678 12866412 2036590..2037516 1 NC_017310.1 TIGRFAM: acetylglutamate kinase; KEGG: dde:Dde_2015 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 2037516 12866412 Deval_1825 Desulfovibrio vulgaris RCH1 acetylglutamate kinase YP_005702614.1 2036590 D 573059 CDS YP_005702615.1 387153679 12866413 complement(2037623..2038951) 1 NC_017310.1 KEGG: dde:Dde_2021 CgeB family protein; CgeB family protein 2038951 12866413 Deval_1826 Desulfovibrio vulgaris RCH1 CgeB family protein YP_005702615.1 2037623 R 573059 CDS YP_005702616.1 387153680 12866414 complement(2038995..2040230) 1 NC_017310.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein; glycosyl transferase family protein 2040230 12866414 Deval_1827 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005702616.1 2038995 R 573059 CDS YP_005702617.1 387153681 12866415 2040353..2041030 1 NC_017310.1 KEGG: dde:Dde_2023 precorrin-2 dehydrogenase; TIGRFAM: siroheme synthase; siroheme synthase 2041030 12866415 Deval_1828 Desulfovibrio vulgaris RCH1 siroheme synthase YP_005702617.1 2040353 D 573059 CDS YP_005702618.1 387153682 12866416 2041017..2041847 1 NC_017310.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_2024 cytochrome c assembly protein, putative; cytochrome c assembly protein 2041847 12866416 Deval_1829 Desulfovibrio vulgaris RCH1 cytochrome c assembly protein YP_005702618.1 2041017 D 573059 CDS YP_005702619.1 387153683 12866417 2041849..2043171 1 NC_017310.1 KEGG: dde:Dde_2025 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 2043171 12866417 Deval_1830 Desulfovibrio vulgaris RCH1 glutamyl-tRNA reductase YP_005702619.1 2041849 D 573059 CDS YP_005702620.1 387153684 12866418 2043189..2043524 1 NC_017310.1 KEGG: dde:Dde_2026 hypothetical protein; hypothetical protein 2043524 12866418 Deval_1831 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702620.1 2043189 D 573059 CDS YP_005702621.1 387153685 12866419 2043560..2044732 1 NC_017310.1 KEGG: dde:Dde_2027 ketose-bisphosphate aldolase, class-II; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase 2044732 12866419 Deval_1832 Desulfovibrio vulgaris RCH1 tRNA(Ile)-lysidine synthetase YP_005702621.1 2043560 D 573059 CDS YP_005702622.1 387153686 12866420 2044995..2045741 1 NC_017310.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: dde:Dde_2148 chemotaxis protein CheZ, putative; Chemotaxis phosphatase CheZ 2045741 12866420 Deval_1833 Desulfovibrio vulgaris RCH1 Chemotaxis phosphatase CheZ YP_005702622.1 2044995 D 573059 CDS YP_005702623.1 387153687 12866421 2046042..2046971 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2151 thioredoxin reductase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2046971 12866421 Deval_1834 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005702623.1 2046042 D 573059 CDS YP_005702624.1 387153688 12866423 2047215..2048225 1 NC_017310.1 PFAM: protein of unknown function DUF34; KEGG: dde:Dde_1729 hypothetical protein; hypothetical protein 2048225 12866423 Deval_1835 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702624.1 2047215 D 573059 CDS YP_005702625.1 387153689 12866424 2048266..2049009 1 NC_017310.1 PFAM: protein of unknown function DUF164; KEGG: dde:Dde_1728 hypothetical protein; hypothetical protein 2049009 12866424 Deval_1836 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702625.1 2048266 D 573059 CDS YP_005702626.1 387153690 12866426 2049424..2050611 1 NC_017310.1 KEGG: dde:Dde_1726 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2050611 12866426 Deval_1837 Desulfovibrio vulgaris RCH1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_005702626.1 2049424 D 573059 CDS YP_005702627.1 387153691 12866427 2050742..2052463 1 NC_017310.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2052463 12866427 Deval_1838 Desulfovibrio vulgaris RCH1 AMP-dependent synthetase and ligase YP_005702627.1 2050742 D 573059 CDS YP_005702628.1 387153692 12866428 2052468..2052956 1 NC_017310.1 KEGG: dsa:Desal_3347 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 2052956 12866428 Deval_1839 Desulfovibrio vulgaris RCH1 D-tyrosyl-tRNA(Tyr) deacylase YP_005702628.1 2052468 D 573059 CDS YP_005702629.1 387153693 12866429 2052946..2054088 1 NC_017310.1 KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase; PFAM: Stage II sporulation protein E; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; response regulator receiver modulated serine phosphatase 2054088 12866429 Deval_1840 Desulfovibrio vulgaris RCH1 response regulator receiver modulated serine phosphatase YP_005702629.1 2052946 D 573059 CDS YP_005702630.1 387153694 12866430 2054085..2054528 1 NC_017310.1 SMART: ATP-binding region ATPase domain protein; KEGG: dma:DMR_13680 hypothetical protein; ATP-binding region ATPase domain-containing protein 2054528 12866430 Deval_1841 Desulfovibrio vulgaris RCH1 ATP-binding region ATPase domain-containing protein YP_005702630.1 2054085 D 573059 CDS YP_005702631.1 387153695 12866431 2054486..2054830 1 NC_017310.1 KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 2054830 12866431 Deval_1842 Desulfovibrio vulgaris RCH1 anti-sigma-factor antagonist YP_005702631.1 2054486 D 573059 CDS YP_005702632.1 387153696 12866432 2054851..2055987 1 NC_017310.1 PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein; hypothetical protein 2055987 12866432 Deval_1843 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702632.1 2054851 D 573059 CDS YP_005702633.1 387153697 12866433 2055984..2057693 1 NC_017310.1 KEGG: dde:Dde_1715 CgeB family protein; CgeB family protein 2057693 12866433 Deval_1844 Desulfovibrio vulgaris RCH1 CgeB family protein YP_005702633.1 2055984 D 573059 CDS YP_005702634.1 387153698 12866434 2057690..2059093 1 NC_017310.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein; glycosyl transferase family protein 2059093 12866434 Deval_1845 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005702634.1 2057690 D 573059 CDS YP_005702635.1 387153699 12866435 2059236..2060831 1 NC_017310.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: dde:Dde_1713 hypothetical protein; flagellar hook-length control protein-like protein 2060831 12866435 Deval_1846 Desulfovibrio vulgaris RCH1 flagellar hook-length control protein-like protein YP_005702635.1 2059236 D 573059 CDS YP_005702636.1 387153700 12866436 2060844..2061641 1 NC_017310.1 PFAM: flagellar hook capping protein; KEGG: dde:Dde_1712 basal-body rod modification protein FlgD; flagellar hook capping protein 2061641 12866436 Deval_1847 Desulfovibrio vulgaris RCH1 flagellar hook capping protein YP_005702636.1 2060844 D 573059 CDS YP_005702637.1 387153701 12866437 2061699..2063393 1 NC_017310.1 KEGG: dde:Dde_1711 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; flagellar hook-basal body protein 2063393 12866437 Deval_1848 Desulfovibrio vulgaris RCH1 flagellar hook-basal body protein YP_005702637.1 2061699 D 573059 CDS YP_005702638.1 387153702 12866438 complement(2063861..2064235) 1 NC_017310.1 KEGG: dde:Dde_1710 hypothetical protein; hypothetical protein 2064235 12866438 Deval_1849 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702638.1 2063861 R 573059 CDS YP_005702639.1 387153703 12866439 2064507..2065403 1 NC_017310.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1709 flagellin; flagellin domain-containing protein 2065403 12866439 Deval_1850 Desulfovibrio vulgaris RCH1 flagellin domain-containing protein YP_005702639.1 2064507 D 573059 CDS YP_005702640.1 387153704 12866440 complement(2065504..2066190) 1 NC_017310.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: dde:Dde_1708 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 2066190 12866440 Deval_1851 Desulfovibrio vulgaris RCH1 ribonuclease III YP_005702640.1 2065504 R 573059 CDS YP_005702641.1 387153705 12866441 2066744..2067808 1 NC_017310.1 PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein; DRTGG domain-containing protein 2067808 12866441 Deval_1852 Desulfovibrio vulgaris RCH1 DRTGG domain-containing protein YP_005702641.1 2066744 D 573059 CDS YP_005702642.1 387153706 12866442 2068305..2069489 1 NC_017310.1 PFAM: major facilitator superfamily MFS_1; KEGG: lip:LI1013 major facilitator superfamily permease; major facilitator superfamily protein 2069489 12866442 Deval_1853 Desulfovibrio vulgaris RCH1 major facilitator superfamily protein YP_005702642.1 2068305 D 573059 CDS YP_005702643.1 387153707 12866443 2069552..2069917 1 NC_017310.1 KEGG: dde:Dde_1702 hypothetical protein; hypothetical protein 2069917 12866443 Deval_1854 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702643.1 2069552 D 573059 CDS YP_005702644.1 387153708 12866444 2070153..2072747 1 NC_017310.1 KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB; PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 2072747 12866444 Deval_1855 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702644.1 2070153 D 573059 CDS YP_005702645.1 387153709 12866445 complement(2072974..2075169) 1 NC_017310.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1700 CheA signal transduction histidine kinase; sulfate transporter/antisigma-factor antagonist STAS 2075169 12866445 Deval_1856 Desulfovibrio vulgaris RCH1 sulfate transporter/antisigma-factor antagonist STAS YP_005702645.1 2072974 R 573059 CDS YP_005702646.1 387153710 12866446 2075363..2077969 1 NC_017310.1 PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; peptidase M16 domain-containing protein 2077969 12866446 Deval_1857 Desulfovibrio vulgaris RCH1 peptidase M16 domain-containing protein YP_005702646.1 2075363 D 573059 CDS YP_005702647.1 387153711 12866447 2078383..2079483 1 NC_017310.1 KEGG: dde:Dde_1698 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; GTP-binding protein YchF 2079483 12866447 Deval_1858 Desulfovibrio vulgaris RCH1 GTP-binding protein YchF YP_005702647.1 2078383 D 573059 CDS YP_005702648.1 387153712 12866448 2079762..2081417 1 NC_017310.1 KEGG: phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase, alpha-D-glucose phosphate-specific 2081417 12866448 Deval_1859 Desulfovibrio vulgaris RCH1 phosphoglucomutase, alpha-D-glucose phosphate-specific YP_005702648.1 2079762 D 573059 CDS YP_005702649.1 387153713 12866449 2081525..2081938 1 NC_017310.1 KEGG: dde:Dde_1694 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2081938 12866449 Deval_1860 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005702649.1 2081525 D 573059 CDS YP_005702650.1 387153714 12866450 2082130..2082513 1 NC_017310.1 KEGG: dde:Dde_1693 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; glycine cleavage system H protein 2082513 12866450 Deval_1861 Desulfovibrio vulgaris RCH1 glycine cleavage system H protein YP_005702650.1 2082130 D 573059 CDS YP_005702651.1 387153715 12866451 2082528..2083859 1 NC_017310.1 KEGG: dde:Dde_1692 glycine dehydrogenase subunit 1; PFAM: Glycine cleavage system P-protein-like; glycine dehydrogenase 2083859 12866451 Deval_1862 Desulfovibrio vulgaris RCH1 glycine dehydrogenase YP_005702651.1 2082528 D 573059 CDS YP_005702652.1 387153716 12866452 2083856..2085301 1 NC_017310.1 KEGG: dde:Dde_1691 glycine dehydrogenase subunit 2; glycine dehydrogenase subunit 2 2085301 12866452 Deval_1863 Desulfovibrio vulgaris RCH1 glycine dehydrogenase subunit 2 YP_005702652.1 2083856 D 573059 CDS YP_005702653.1 387153717 12866453 2085291..2086661 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1690 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2086661 12866453 Deval_1864 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005702653.1 2085291 D 573059 CDS YP_005702654.1 387153718 12866454 2086803..2087837 1 NC_017310.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein; OmpA/MotB domain-containing protein 2087837 12866454 Deval_1865 Desulfovibrio vulgaris RCH1 OmpA/MotB domain-containing protein YP_005702654.1 2086803 D 573059 CDS YP_005702655.1 387153719 12866455 2087902..2088363 1 NC_017310.1 KEGG: dde:Dde_1688 hypothetical protein; hypothetical protein 2088363 12866455 Deval_1866 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702655.1 2087902 D 573059 CDS YP_005702656.1 387153720 12866456 complement(2088563..2088934) 1 NC_017310.1 PFAM: Hpt domain protein; KEGG: npu:Npun_R1685 multi-sensor hybrid histidine kinase; Hpt domain-containing protein 2088934 12866456 Deval_1867 Desulfovibrio vulgaris RCH1 Hpt domain-containing protein YP_005702656.1 2088563 R 573059 CDS YP_005702657.1 387153721 12866457 complement(2088995..2090374) 1 NC_017310.1 KEGG: dde:Dde_1685 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 2090374 12866457 Deval_1868 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005702657.1 2088995 R 573059 CDS YP_005702658.1 387153722 12866458 complement(2090371..2092110) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 2092110 12866458 Deval_1869 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_005702658.1 2090371 R 573059 CDS YP_005702659.1 387153723 12866459 complement(2092557..2096141) 1 NC_017310.1 KEGG: dde:Dde_1682 hypothetical protein; hypothetical protein 2096141 12866459 Deval_1870 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702659.1 2092557 R 573059 CDS YP_005702660.1 387153724 12866460 complement(2096177..2099170) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: amr:AM1_4072 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2099170 12866460 Deval_1871 Desulfovibrio vulgaris RCH1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_005702660.1 2096177 R 573059 CDS YP_005702661.1 387153725 12866461 complement(2099202..2100494) 1 NC_017310.1 KEGG: drt:Dret_1307 extracellular ligand-binding receptor; hypothetical protein 2100494 12866461 Deval_1872 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702661.1 2099202 R 573059 CDS YP_005702662.1 387153726 12866462 2100608..2101588 1 NC_017310.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2101588 12866462 Deval_1873 Desulfovibrio vulgaris RCH1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005702662.1 2100608 D 573059 CDS YP_005702663.1 387153727 12866463 complement(2101910..2103199) 1 NC_017310.1 KEGG: dde:Dde_1680 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 2103199 12866463 Deval_1874 Desulfovibrio vulgaris RCH1 thiamine biosynthesis protein ThiC YP_005702663.1 2101910 R 573059 CDS YP_005702664.1 387153728 12866464 2103550..2104545 1 NC_017310.1 KEGG: dde:Dde_1679 hypothetical protein; hypothetical protein 2104545 12866464 Deval_1875 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702664.1 2103550 D 573059 CDS YP_005702665.1 387153729 12866465 complement(2104822..2105286) 1 NC_017310.1 KEGG: dde:Dde_1678 hypothetical protein; hypothetical protein 2105286 12866465 Deval_1876 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702665.1 2104822 R 573059 CDS YP_005702666.1 387153730 12866466 complement(2105304..2105627) 1 NC_017310.1 KEGG: dde:Dde_1677 hypothetical protein; hypothetical protein 2105627 12866466 Deval_1877 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702666.1 2105304 R 573059 CDS YP_005702667.1 387153731 12866467 2105764..2107239 1 NC_017310.1 KEGG: dde:Dde_1676 elongator protein 3/MiaB/NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2107239 12866467 Deval_1878 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005702667.1 2105764 D 573059 CDS YP_005702668.1 387153732 12866468 complement(2107556..2108608) 1 NC_017310.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: dde:Dde_1672 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase 2108608 12866468 Deval_1879 Desulfovibrio vulgaris RCH1 phosphoribosylformylglycinamidine cyclo-ligase YP_005702668.1 2107556 R 573059 CDS YP_005702669.1 387153733 12866469 2108694..2109122 1 NC_017310.1 KEGG: cqu:CpipJ_CPIJ000761 expanded; hypothetical protein 2109122 12866469 Deval_1880 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702669.1 2108694 D 573059 CDS YP_005702670.1 387153734 12866470 2109085..2110212 1 NC_017310.1 KEGG: dba:Dbac_0044 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2110212 12866470 Deval_1881 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005702670.1 2109085 D 573059 CDS YP_005702671.1 387153735 12866471 2110190..2110693 1 NC_017310.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dds:Ddes_1842 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 2110693 12866471 Deval_1882 Desulfovibrio vulgaris RCH1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_005702671.1 2110190 D 573059 CDS YP_005702672.1 387153736 12866472 complement(2110698..2111693) 1 NC_017310.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sdn:Sden_2565 DNA-binding transcriptional activator GcvA; LysR family transcriptional regulator 2111693 12866472 Deval_1883 Desulfovibrio vulgaris RCH1 LysR family transcriptional regulator YP_005702672.1 2110698 R 573059 CDS YP_005702673.1 387153737 12866473 2111846..2112811 1 NC_017310.1 PFAM: Auxin Efflux Carrier; KEGG: dde:Dde_0880 hypothetical protein; auxin efflux carrier family protein 2112811 12866473 Deval_1884 Desulfovibrio vulgaris RCH1 auxin efflux carrier family protein YP_005702673.1 2111846 D 573059 CDS YP_005702674.1 387153738 12866474 complement(2112977..2114914) 1 NC_017310.1 KEGG: dsa:Desal_0917 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 2114914 12866474 Deval_1885 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005702674.1 2112977 R 573059 CDS YP_005702675.1 387153739 12866475 2114959..2115357 1 NC_017310.1 KEGG: nmu:Nmul_A2173 transposase IS3/IS911; manually curated; PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2115357 12866475 Deval_1886 Desulfovibrio vulgaris RCH1 transposase IS3/IS911 family protein YP_005702675.1 2114959 D 573059 CDS YP_005702676.1 387153740 12866476 2115354..2116196 1 NC_017310.1 PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit; integrase catalytic subunit 2116196 12866476 Deval_1887 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005702676.1 2115354 D 573059 CDS YP_005702677.1 387153741 12866477 complement(2116159..2117001) 1 NC_017310.1 KEGG: dba:Dbac_1296 transcriptional regulator-like protein; transcriptional regulator-like protein 2117001 12866477 Deval_1888 Desulfovibrio vulgaris RCH1 transcriptional regulator-like protein YP_005702677.1 2116159 R 573059 CDS YP_005702678.1 387153742 12866478 2117482..2118195 1 NC_017310.1 PFAM: ERF family protein; KEGG: lip:LI0182 putative recombination protein-phage associated; ERF family protein 2118195 12866478 Deval_1889 Desulfovibrio vulgaris RCH1 ERF family protein YP_005702678.1 2117482 D 573059 CDS YP_005702679.1 387153743 12866479 2118267..2119538 1 NC_017310.1 KEGG: dde:Dde_3432 hypothetical protein; hypothetical protein 2119538 12866479 Deval_1890 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702679.1 2118267 D 573059 CDS YP_005702680.1 387153744 12866480 2119541..2119906 1 NC_017310.1 KEGG: lip:LI0184 hypothetical protein; hypothetical protein 2119906 12866480 Deval_1891 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702680.1 2119541 D 573059 CDS YP_005702681.1 387153745 12866481 complement(2119903..2120190) 1 NC_017310.1 KEGG: addiction module toxin, RelE/StbE family; manually curated; PFAM: plasmid stabilization system; plasmid stabilization system 2120190 12866481 Deval_1892 Desulfovibrio vulgaris RCH1 plasmid stabilization system YP_005702681.1 2119903 R 573059 CDS YP_005702682.1 387153746 12866482 complement(2120180..2120419) 1 NC_017310.1 KEGG: dze:Dd1591_2452 transcriptional regulator, CopG family; CopG family transcriptional regulator 2120419 12866482 Deval_1893 Desulfovibrio vulgaris RCH1 CopG family transcriptional regulator YP_005702682.1 2120180 R 573059 CDS YP_005702683.1 387153747 12866483 2120498..2121472 1 NC_017310.1 KEGG: dde:Dde_3433 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATPase 2121472 12866483 Deval_1894 Desulfovibrio vulgaris RCH1 ATPase YP_005702683.1 2120498 D 573059 CDS YP_005702684.1 387153748 12866484 2121891..2122166 1 NC_017310.1 KEGG: tps:THAPSDRAFT_11220 hypothetical protein; hypothetical protein 2122166 12866484 Deval_1895 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702684.1 2121891 D 573059 CDS YP_005702685.1 387153749 12866485 2122176..2122463 1 NC_017310.1 KEGG: tca:658043 similar to Aspartate aminotransferase, cytoplasmic (Transaminase A) (Glutamate oxaloacetate transaminase 1); hypothetical protein 2122463 12866485 Deval_1896 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702685.1 2122176 D 573059 CDS YP_005702686.1 387153750 12866486 2122509..2123504 1 NC_017310.1 KEGG: dde:Dde_2921 hypothetical protein; hypothetical protein 2123504 12866486 Deval_1897 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702686.1 2122509 D 573059 CDS YP_005702687.1 387153751 12866487 2123566..2124312 1 NC_017310.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dba:Dbac_1233 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2124312 12866487 Deval_1898 Desulfovibrio vulgaris RCH1 filamentation induced by cAMP protein fic YP_005702687.1 2123566 D 573059 CDS YP_005702688.1 387153752 12866488 2124381..2125982 1 NC_017310.1 KEGG: dde:Dde_2920 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; von Willebrand factor type A 2125982 12866488 Deval_1899 Desulfovibrio vulgaris RCH1 von Willebrand factor type A YP_005702688.1 2124381 D 573059 CDS YP_005702689.1 387153753 12866489 2126029..2126148 1 NC_017310.1 hypothetical protein 2126148 12866489 Deval_1900 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702689.1 2126029 D 573059 CDS YP_005702690.1 387153754 12866490 2126209..2126391 1 NC_017310.1 hypothetical protein 2126391 12866490 Deval_1901 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702690.1 2126209 D 573059 CDS YP_005702691.1 387153755 12866491 complement(2126687..2129122) 1 NC_017310.1 SMART: AAA ATPase; KEGG: nhl:Nhal_1924 hypothetical protein; AAA ATPase 2129122 12866491 Deval_1902 Desulfovibrio vulgaris RCH1 AAA ATPase YP_005702691.1 2126687 R 573059 CDS YP_005702692.1 387153756 12866492 complement(2129389..2129691) 1 NC_017310.1 KEGG: sfu:Sfum_2425 hypothetical protein; hypothetical protein 2129691 12866492 Deval_1903 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702692.1 2129389 R 573059 CDS YP_005702693.1 387153757 12866495 complement(2131163..2132461) 1 NC_017310.1 KEGG: ter:Tery_0626 tetratricopeptide TPR_2; hypothetical protein 2132461 12866495 Deval_1906 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702693.1 2131163 R 573059 CDS YP_005702694.1 387153758 12866497 2132861..2133583 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2133583 12866497 Deval_1907 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005702694.1 2132861 D 573059 CDS YP_005702695.1 387153759 12866498 2133813..2134493 1 NC_017310.1 PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein; hypothetical protein 2134493 12866498 Deval_1908 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702695.1 2133813 D 573059 CDS YP_005702696.1 387153760 12866499 complement(2134663..2136654) 1 NC_017310.1 KEGG: dde:Dde_1594 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; methionyl-tRNA synthetase 2136654 12866499 Deval_1909 Desulfovibrio vulgaris RCH1 methionyl-tRNA synthetase YP_005702696.1 2134663 R 573059 CDS YP_005702697.1 387153761 12866500 complement(2136884..2138347) 1 NC_017310.1 PFAM: PSP1 domain protein; KEGG: dde:Dde_1593 hypothetical protein; PSP1 domain-containing protein 2138347 12866500 Deval_1910 Desulfovibrio vulgaris RCH1 PSP1 domain-containing protein YP_005702697.1 2136884 R 573059 CDS YP_005702698.1 387153762 12866501 2138496..2139116 1 NC_017310.1 KEGG: dde:Dde_1591 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal dependent phosphohydrolase 2139116 12866501 Deval_1911 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005702698.1 2138496 D 573059 CDS YP_005702699.1 387153763 12866502 2139131..2140123 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1590 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2140123 12866502 Deval_1912 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005702699.1 2139131 D 573059 CDS YP_005702700.1 387153764 12866503 2140407..2141741 1 NC_017310.1 PFAM: phosphofructokinase; KEGG: dde:Dde_1589 diphosphate--fructose-6-phosphate 1-phosphotransferase; phosphofructokinase 2141741 12866503 Deval_1913 Desulfovibrio vulgaris RCH1 phosphofructokinase YP_005702700.1 2140407 D 573059 CDS YP_005702701.1 387153765 12866504 2141756..2145214 1 NC_017310.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 2145214 12866504 Deval_1914 Desulfovibrio vulgaris RCH1 UvrD/REP helicase YP_005702701.1 2141756 D 573059 CDS YP_005702702.1 387153766 12866505 2145211..2148165 1 NC_017310.1 KEGG: dde:Dde_1587 hypothetical protein; hypothetical protein 2148165 12866505 Deval_1915 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702702.1 2145211 D 573059 CDS YP_005702703.1 387153767 12866506 2148277..2149398 1 NC_017310.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: dds:Ddes_0977 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase 2149398 12866506 Deval_1916 Desulfovibrio vulgaris RCH1 2-nitropropane dioxygenase YP_005702703.1 2148277 D 573059 CDS YP_005702704.1 387153768 12866507 complement(2149712..2151184) 1 NC_017310.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1585 site-specific recombinase XerD-like; integrase family protein 2151184 12866507 Deval_1917 Desulfovibrio vulgaris RCH1 integrase family protein YP_005702704.1 2149712 R 573059 CDS YP_005702705.1 387153769 12866508 complement(2151129..2152250) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2152250 12866508 Deval_1918 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005702705.1 2151129 R 573059 CDS YP_005702706.1 387153770 12866509 complement(2152250..2153092) 1 NC_017310.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 putative signal transduction protein; putative signal transduction protein 2153092 12866509 Deval_1919 Desulfovibrio vulgaris RCH1 putative signal transduction protein YP_005702706.1 2152250 R 573059 CDS YP_005702707.1 387153771 12866510 complement(2153146..2153478) 1 NC_017310.1 KEGG: dde:Dde_1582 hypothetical protein; hypothetical protein 2153478 12866510 Deval_1920 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702707.1 2153146 R 573059 CDS YP_005702708.1 387153772 12866511 complement(2153498..2155489) 1 NC_017310.1 KEGG: dds:Ddes_0966 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA 2155489 12866511 Deval_1921 Desulfovibrio vulgaris RCH1 DNA protecting protein DprA YP_005702708.1 2153498 R 573059 CDS YP_005702709.1 387153773 12866512 complement(2155498..2156271) 1 NC_017310.1 TIGRFAM: tol-pal system protein YbgF; KEGG: lip:LI0109 hypothetical protein; tol-pal system protein YbgF 2156271 12866512 Deval_1922 Desulfovibrio vulgaris RCH1 tol-pal system protein YbgF YP_005702709.1 2155498 R 573059 CDS YP_005702710.1 387153774 12866514 complement(2157654..2160923) 1 NC_017310.1 KEGG: dds:Ddes_1383 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; CheA signal transduction histidine kinase 2160923 12866514 Deval_1924 Desulfovibrio vulgaris RCH1 CheA signal transduction histidine kinase YP_005702710.1 2157654 R 573059 CDS YP_005702711.1 387153775 12866515 complement(2161019..2161387) 1 NC_017310.1 KEGG: dde:Dde_1576 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2161387 12866515 Deval_1925 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005702711.1 2161019 R 573059 CDS YP_005702712.1 387153776 12866516 complement(2161397..2162047) 1 NC_017310.1 KEGG: dde:Dde_1575 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; CheW protein 2162047 12866516 Deval_1926 Desulfovibrio vulgaris RCH1 CheW protein YP_005702712.1 2161397 R 573059 CDS YP_005702713.1 387153777 12866517 complement(2162041..2162817) 1 NC_017310.1 KEGG: dde:Dde_1574 ParA family protein; ParA family protein 2162817 12866517 Deval_1927 Desulfovibrio vulgaris RCH1 ParA family protein YP_005702713.1 2162041 R 573059 CDS YP_005702714.1 387153778 12866518 complement(2162868..2163743) 1 NC_017310.1 PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_1573 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR 2163743 12866518 Deval_1928 Desulfovibrio vulgaris RCH1 chemotaxis protein CheR YP_005702714.1 2162868 R 573059 CDS YP_005702715.1 387153779 12866519 complement(2163743..2165671) 1 NC_017310.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: dde:Dde_1572 heat repeat-containing PBS lyase; PBS lyase HEAT domain-containing protein repeat-containing protein 2165671 12866519 Deval_1929 Desulfovibrio vulgaris RCH1 PBS lyase HEAT domain-containing protein repeat-containing protein YP_005702715.1 2163743 R 573059 CDS YP_005702716.1 387153780 12866520 complement(2165730..2166833) 1 NC_017310.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_1571 response regulator receiver domain-containing protein; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase 2166833 12866520 Deval_1930 Desulfovibrio vulgaris RCH1 response regulator receiver modulated CheB methylesterase YP_005702716.1 2165730 R 573059 CDS YP_005702717.1 387153781 12866522 complement(2167170..2169605) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: app:CAP2UW1_0158 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase 2169605 12866522 Deval_1931 Desulfovibrio vulgaris RCH1 PAS/PAC sensor signal transduction histidine kinase YP_005702717.1 2167170 R 573059 CDS YP_005702718.1 387153782 12866523 2169890..2170027 1 NC_017310.1 hypothetical protein 2170027 12866523 Deval_1932 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702718.1 2169890 D 573059 CDS YP_005702719.1 387153783 12866524 2170097..2170435 1 NC_017310.1 KEGG: dps:DP2299 hypothetical protein; hypothetical protein 2170435 12866524 Deval_1933 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702719.1 2170097 D 573059 CDS YP_005702720.1 387153784 12866525 2171002..2171895 1 NC_017310.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1570 flagellin, putative; flagellin domain-containing protein 2171895 12866525 Deval_1934 Desulfovibrio vulgaris RCH1 flagellin domain-containing protein YP_005702720.1 2171002 D 573059 CDS YP_005702721.1 387153785 12866526 complement(2171978..2172094) 1 NC_017310.1 hypothetical protein 2172094 12866526 Deval_1935 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702721.1 2171978 R 573059 CDS YP_005702722.1 387153786 12866527 complement(2172094..2174247) 1 NC_017310.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: dde:Dde_1569 metal dependent phosphohydrolase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein; (p)ppGpp synthetase I SpoT/RelA 2174247 12866527 Deval_1936 Desulfovibrio vulgaris RCH1 (p)ppGpp synthetase I SpoT/RelA YP_005702722.1 2172094 R 573059 CDS YP_005702723.1 387153787 12866528 complement(2174251..2175948) 1 NC_017310.1 PFAM: extracellular solute-binding protein family 5; KEGG: dma:DMR_35960 putative peptide ABC transporter substrate binding protein; family 5 extracellular solute-binding protein 2175948 12866528 Deval_1937 Desulfovibrio vulgaris RCH1 family 5 extracellular solute-binding protein YP_005702723.1 2174251 R 573059 CDS YP_005702724.1 387153788 12866529 2176181..2179396 1 NC_017310.1 KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SNF2-related protein 2179396 12866529 Deval_1938 Desulfovibrio vulgaris RCH1 SNF2-related protein YP_005702724.1 2176181 D 573059 CDS YP_005702725.1 387153789 12866530 complement(2179651..2181093) 1 NC_017310.1 KEGG: cdf:CD3353 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; DeoR family transcriptional regulator 2181093 12866530 Deval_1939 Desulfovibrio vulgaris RCH1 DeoR family transcriptional regulator YP_005702725.1 2179651 R 573059 CDS YP_005702726.1 387153790 12866531 2181224..2181901 1 NC_017310.1 KEGG: cdl:CDR20291_3198 hypothetical protein; PFAM: B3/4 domain protein; SMART: B3/4 domain protein; B3/4 domain-containing protein 2181901 12866531 Deval_1940 Desulfovibrio vulgaris RCH1 B3/4 domain-containing protein YP_005702726.1 2181224 D 573059 CDS YP_005702727.1 387153791 12866532 2181898..2182818 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bha:BH0390 hypothetical protein; hypothetical protein 2182818 12866532 Deval_1941 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702727.1 2181898 D 573059 CDS YP_005702728.1 387153792 12866533 2183089..2183925 1 NC_017310.1 KEGG: dat:HRM2_21040 hypothetical protein; hypothetical protein 2183925 12866533 Deval_1942 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702728.1 2183089 D 573059 CDS YP_005702729.1 387153793 12866534 complement(2184060..2184740) 1 NC_017310.1 KEGG: dds:Ddes_0209 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 2184740 12866534 Deval_1943 Desulfovibrio vulgaris RCH1 thiamine-phosphate pyrophosphorylase YP_005702729.1 2184060 R 573059 CDS YP_005702730.1 387153794 12866535 complement(2185009..2185635) 1 NC_017310.1 KEGG: lip:LI0506 thiamine biosynthesis protein ThiF; TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; thiamine biosynthesis protein ThiF 2185635 12866535 Deval_1944 Desulfovibrio vulgaris RCH1 thiamine biosynthesis protein ThiF YP_005702730.1 2185009 R 573059 CDS YP_005702731.1 387153795 12866536 complement(2185635..2186969) 1 NC_017310.1 TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; KEGG: dds:Ddes_2167 thiazole biosynthesis protein ThiH; SMART: biotin and thiamin synthesis associated; thiazole biosynthesis protein ThiH 2186969 12866536 Deval_1945 Desulfovibrio vulgaris RCH1 thiazole biosynthesis protein ThiH YP_005702731.1 2185635 R 573059 CDS YP_005702732.1 387153796 12866537 complement(2186972..2187769) 1 NC_017310.1 PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase; thiazole biosynthesis family protein 2187769 12866537 Deval_1946 Desulfovibrio vulgaris RCH1 thiazole biosynthesis family protein YP_005702732.1 2186972 R 573059 CDS YP_005702733.1 387153797 12866538 complement(2187769..2187969) 1 NC_017310.1 KEGG: tro:trd_0402 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS 2187969 12866538 Deval_1947 Desulfovibrio vulgaris RCH1 thiamine biosynthesis protein ThiS YP_005702733.1 2187769 R 573059 CDS YP_005702734.1 387153798 12866539 2188857..2189528 1 NC_017310.1 KEGG: dsa:Desal_2509 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; CarD family transcriptional regulator 2189528 12866539 Deval_1948 Desulfovibrio vulgaris RCH1 CarD family transcriptional regulator YP_005702734.1 2188857 D 573059 CDS YP_005702735.1 387153799 12866540 2189817..2191706 1 NC_017310.1 TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: dds:Ddes_0382 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; carbon-monoxide dehydrogenase, catalytic subunit 2191706 12866540 Deval_1949 Desulfovibrio vulgaris RCH1 carbon-monoxide dehydrogenase, catalytic subunit YP_005702735.1 2189817 D 573059 CDS YP_005702736.1 387153800 12866541 2191791..2192672 1 NC_017310.1 KEGG: dde:Dde_3029 carbon monoxide dehydrogenase accessory protein CooC, putative; carbon monoxide dehydrogenase accessory protein CooC, putative 2192672 12866541 Deval_1950 Desulfovibrio vulgaris RCH1 carbon monoxide dehydrogenase accessory protein CooC, putative YP_005702736.1 2191791 D 573059 CDS YP_005702737.1 387153801 12866542 complement(2192813..2193229) 1 NC_017310.1 PFAM: UspA domain-containing protein; KEGG: dma:DMR_42220 putative universal stress protein; UspA domain-containing protein 2193229 12866542 Deval_1951 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005702737.1 2192813 R 573059 CDS YP_005702738.1 387153802 12866543 complement(2193455..2198806) 1 NC_017310.1 PFAM: protein of unknown function DUF490; KEGG: mpo:Mpop_2889 protein of unknown function DUF490; hypothetical protein 2198806 12866543 Deval_1952 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702738.1 2193455 R 573059 CDS YP_005702739.1 387153803 12866544 complement(2198806..2201136) 1 NC_017310.1 PFAM: surface antigen (D15); KEGG: dds:Ddes_0465 surface antigen (D15); surface antigen (D15) 2201136 12866544 Deval_1953 Desulfovibrio vulgaris RCH1 surface antigen (D15) YP_005702739.1 2198806 R 573059 CDS YP_005702740.1 387153804 12866545 complement(2201411..2202274) 1 NC_017310.1 KEGG: dde:Dde_3201 iron-sulfur cluster-binding/ATPase domain-containing protein; iron-sulfur cluster-binding/ATPase domain-containing protein 2202274 12866545 Deval_1954 Desulfovibrio vulgaris RCH1 iron-sulfur cluster-binding/ATPase domain-containing protein YP_005702740.1 2201411 R 573059 CDS YP_005702741.1 387153805 12866546 complement(2202271..2203176) 1 NC_017310.1 KEGG: drt:Dret_0442 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 2203176 12866546 Deval_1955 Desulfovibrio vulgaris RCH1 cobyrinic acid ac-diamide synthase YP_005702741.1 2202271 R 573059 CDS YP_005702742.1 387153806 12866547 2203878..2205254 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dma:DMR_41220 fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 2205254 12866547 Deval_1956 Desulfovibrio vulgaris RCH1 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_005702742.1 2203878 D 573059 CDS YP_005702743.1 387153807 12866548 2205612..2206022 1 NC_017310.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0622 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 2206022 12866548 Deval_1957 Desulfovibrio vulgaris RCH1 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_005702743.1 2205612 D 573059 CDS YP_005702744.1 387153808 12866549 2206013..2206372 1 NC_017310.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0621 dinitrogenase iron-molybdenum cofactor biosynthesis protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 2206372 12866549 Deval_1958 Desulfovibrio vulgaris RCH1 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_005702744.1 2206013 D 573059 CDS YP_005702745.1 387153809 12866550 2206369..2207832 1 NC_017310.1 PFAM: ATPase-like, ParA/MinD; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsa:Desal_0620 cobyrinic acid ac-diamide synthase; ParA/MinD-like ATPase 2207832 12866550 Deval_1959 Desulfovibrio vulgaris RCH1 ParA/MinD-like ATPase YP_005702745.1 2206369 D 573059 CDS YP_005702746.1 387153810 12866551 complement(2208181..2209818) 1 NC_017310.1 KEGG: dma:DMR_20020 L-lactate permease; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 2209818 12866551 Deval_1960 Desulfovibrio vulgaris RCH1 L-lactate transport YP_005702746.1 2208181 R 573059 CDS YP_005702747.1 387153811 12866552 2209975..2210877 1 NC_017310.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_2181 transcriptional regulatory protein; LysR family transcriptional regulator 2210877 12866552 Deval_1961 Desulfovibrio vulgaris RCH1 LysR family transcriptional regulator YP_005702747.1 2209975 D 573059 CDS YP_005702748.1 387153812 12866553 2211054..2211293 1 NC_017310.1 manually curated; KEGG: slt:Slit_0012 multi-sensor signal transduction histidine kinase; hypothetical protein 2211293 12866553 Deval_1962 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702748.1 2211054 D 573059 CDS YP_005702749.1 387153813 12866554 complement(2211605..2212933) 1 NC_017310.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: chy:CHY_0697 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 2212933 12866554 Deval_1963 Desulfovibrio vulgaris RCH1 xanthine/uracil/vitamin C permease YP_005702749.1 2211605 R 573059 CDS YP_005702750.1 387153814 12866555 2213568..2214956 1 NC_017310.1 KEGG: dde:Dde_2355 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 2214956 12866555 Deval_1964 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005702750.1 2213568 D 573059 CDS YP_005702751.1 387153815 12866556 2215405..2215581 1 NC_017310.1 PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative; Flp/Fap pilin component 2215581 12866556 Deval_1965 Desulfovibrio vulgaris RCH1 Flp/Fap pilin component YP_005702751.1 2215405 D 573059 CDS YP_005702752.1 387153816 12866557 2215622..2215795 1 NC_017310.1 PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative; Flp/Fap pilin component 2215795 12866557 Deval_1966 Desulfovibrio vulgaris RCH1 Flp/Fap pilin component YP_005702752.1 2215622 D 573059 CDS YP_005702753.1 387153817 12866558 2216016..2216582 1 NC_017310.1 PFAM: peptidase A24A prepilin type IV; KEGG: dde:Dde_2358 hypothetical protein; peptidase A24A prepilin type IV 2216582 12866558 Deval_1967 Desulfovibrio vulgaris RCH1 peptidase A24A prepilin type IV YP_005702753.1 2216016 D 573059 CDS YP_005702754.1 387153818 12866559 2216592..2217410 1 NC_017310.1 KEGG: dde:Dde_2359 putative pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; Flp pilus assembly protein CpaB 2217410 12866559 Deval_1968 Desulfovibrio vulgaris RCH1 Flp pilus assembly protein CpaB YP_005702754.1 2216592 D 573059 CDS YP_005702755.1 387153819 12866560 2217407..2218861 1 NC_017310.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: dde:Dde_2360 type II/III secretion system protein; type II and III secretion system protein 2218861 12866560 Deval_1969 Desulfovibrio vulgaris RCH1 type II and III secretion system protein YP_005702755.1 2217407 D 573059 CDS YP_005702756.1 387153820 12866561 2218871..2219275 1 NC_017310.1 KEGG: dde:Dde_2361 hypothetical protein; hypothetical protein 2219275 12866561 Deval_1970 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702756.1 2218871 D 573059 CDS YP_005702757.1 387153821 12866562 2219287..2220501 1 NC_017310.1 KEGG: dde:Dde_2362 response regulator receiver domain-containing protein; response regulator receiver protein 2220501 12866562 Deval_1971 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005702757.1 2219287 D 573059 CDS YP_005702758.1 387153822 12866563 2220505..2222331 1 NC_017310.1 PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein; type II secretion system protein E 2222331 12866563 Deval_1972 Desulfovibrio vulgaris RCH1 type II secretion system protein E YP_005702758.1 2220505 D 573059 CDS YP_005702759.1 387153823 12866564 2222411..2223376 1 NC_017310.1 PFAM: Type II secretion system F domain; KEGG: dde:Dde_2364 hypothetical protein; type II secretion system F domain-containing protein 2223376 12866564 Deval_1973 Desulfovibrio vulgaris RCH1 type II secretion system F domain-containing protein YP_005702759.1 2222411 D 573059 CDS YP_005702760.1 387153824 12866565 2223388..2224359 1 NC_017310.1 PFAM: Type II secretion system F domain; KEGG: dde:Dde_2365 hypothetical protein; type II secretion system F domain-containing protein 2224359 12866565 Deval_1974 Desulfovibrio vulgaris RCH1 type II secretion system F domain-containing protein YP_005702760.1 2223388 D 573059 CDS YP_005702761.1 387153825 12866566 2224413..2225528 1 NC_017310.1 KEGG: dde:Dde_2366 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 2225528 12866566 Deval_1975 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702761.1 2224413 D 573059 CDS YP_005702762.1 387153826 12866567 2225717..2226106 1 NC_017310.1 PFAM: TadE family protein; KEGG: dde:Dde_2367 hypothetical protein; TadE family protein 2226106 12866567 Deval_1976 Desulfovibrio vulgaris RCH1 TadE family protein YP_005702762.1 2225717 D 573059 CDS YP_005702763.1 387153827 12866568 2226057..2227379 1 NC_017310.1 KEGG: dde:Dde_2368 von Willebrand factor, type A; PFAM: Protein of unknown function DUF2134, membrane; von Willebrand factor type A; SMART: von Willebrand factor type A; hypothetical protein 2227379 12866568 Deval_1977 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702763.1 2226057 D 573059 CDS YP_005702764.1 387153828 12866569 2227395..2227889 1 NC_017310.1 PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein; TadE family protein 2227889 12866569 Deval_1978 Desulfovibrio vulgaris RCH1 TadE family protein YP_005702764.1 2227395 D 573059 CDS YP_005702765.1 387153829 12866570 2228080..2230398 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: dde:Dde_2370 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; signal transduction histidine kinase, nitrogen specific, NtrB 2230398 12866570 Deval_1979 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_005702765.1 2228080 D 573059 CDS YP_005702766.1 387153830 12866571 complement(2230385..2231047) 1 NC_017310.1 KEGG: dma:DMR_15480 hypothetical protein; hypothetical protein 2231047 12866571 Deval_1980 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702766.1 2230385 R 573059 CDS YP_005702767.1 387153831 12866572 2231350..2231823 1 NC_017310.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: dma:DMR_11960 hypothetical protein; nucleoside 2-deoxyribosyltransferase 2231823 12866572 Deval_1981 Desulfovibrio vulgaris RCH1 nucleoside 2-deoxyribosyltransferase YP_005702767.1 2231350 D 573059 CDS YP_005702768.1 387153832 12866573 complement(2232090..2232347) 1 NC_017310.1 KEGG: dsa:Desal_0415 hypothetical protein; hypothetical protein 2232347 12866573 Deval_1982 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702768.1 2232090 R 573059 CDS YP_005702769.1 387153833 12866574 complement(2232402..2234141) 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0324; KEGG: dde:Dde_0876 hypothetical protein; hypothetical protein 2234141 12866574 Deval_1983 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702769.1 2232402 R 573059 CDS YP_005702770.1 387153834 12866575 2234861..2235412 1 NC_017310.1 KEGG: dba:Dbac_1599 hypothetical protein; hypothetical protein 2235412 12866575 Deval_1984 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702770.1 2234861 D 573059 CDS YP_005702771.1 387153835 12866576 2235550..2236671 1 NC_017310.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: uma:UM02469.1 hypothetical protein; FxsA cytoplasmic membrane protein 2236671 12866576 Deval_1985 Desulfovibrio vulgaris RCH1 FxsA cytoplasmic membrane protein YP_005702771.1 2235550 D 573059 CDS YP_005702772.1 387153836 12866577 complement(2236892..2238967) 1 NC_017310.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-grasp domain protein; CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP-forming) alpha subunit / succinyl-CoA synthetase (ADP-forming) beta subunit; SMART: CoA-binding domain protein; succinyl-CoA synthetase subunit alpha 2238967 12866577 Deval_1986 Desulfovibrio vulgaris RCH1 succinyl-CoA synthetase subunit alpha YP_005702772.1 2236892 R 573059 CDS YP_005702773.1 387153837 12866578 complement(2239058..2239711) 1 NC_017310.1 KEGG: dde:Dde_2335 hypothetical protein; hypothetical protein 2239711 12866578 Deval_1987 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702773.1 2239058 R 573059 CDS YP_005702774.1 387153838 12866579 complement(2239764..2241083) 1 NC_017310.1 PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein; histone deacetylase superfamily protein 2241083 12866579 Deval_1988 Desulfovibrio vulgaris RCH1 histone deacetylase superfamily protein YP_005702774.1 2239764 R 573059 CDS YP_005702775.1 387153839 12866580 complement(2241237..2241911) 1 NC_017310.1 TIGRFAM: thymidylate kinase; KEGG: dde:Dde_2338 thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 2241911 12866580 Deval_1989 Desulfovibrio vulgaris RCH1 thymidylate kinase YP_005702775.1 2241237 R 573059 CDS YP_005702776.1 387153840 12866581 complement(2241887..2242924) 1 NC_017310.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_2339 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2242924 12866581 Deval_1990 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005702776.1 2241887 R 573059 CDS YP_005702777.1 387153841 12866582 2242969..2243814 1 NC_017310.1 KEGG: dde:Dde_2340 exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 2243814 12866582 Deval_1991 Desulfovibrio vulgaris RCH1 stationary-phase survival protein SurE YP_005702777.1 2242969 D 573059 CDS YP_005702778.1 387153842 12866583 2244263..2245186 1 NC_017310.1 TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 2245186 12866583 Deval_1992 Desulfovibrio vulgaris RCH1 fructose-1,6-bisphosphate aldolase YP_005702778.1 2244263 D 573059 CDS YP_005702779.1 387153843 12866584 2245210..2246211 1 NC_017310.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I 2246211 12866584 Deval_1993 Desulfovibrio vulgaris RCH1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_005702779.1 2245210 D 573059 CDS YP_005702780.1 387153844 12866585 complement(2246536..2247186) 1 NC_017310.1 PFAM: chloramphenicol acetyltransferase; KEGG: dma:DMR_43300 putative chloramphenicol acetyltransferase; chloramphenicol acetyltransferase 2247186 12866585 Deval_1994 Desulfovibrio vulgaris RCH1 chloramphenicol acetyltransferase YP_005702780.1 2246536 R 573059 CDS YP_005702781.1 387153845 12866586 complement(2247196..2247315) 1 NC_017310.1 hypothetical protein 2247315 12866586 Deval_1995 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702781.1 2247196 R 573059 CDS YP_005702782.1 387153846 12866587 complement(2247547..2249055) 1 NC_017310.1 KEGG: dsa:Desal_0783 serine dehydratase alpha chain; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine ammonia-lyase 2249055 12866587 Deval_1996 Desulfovibrio vulgaris RCH1 L-serine ammonia-lyase YP_005702782.1 2247547 R 573059 CDS YP_005702783.1 387153847 12866588 2249530..2250924 1 NC_017310.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: dma:DMR_39890 hypothetical protein; hypothetical protein 2250924 12866588 Deval_1997 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702783.1 2249530 D 573059 CDS YP_005702784.1 387153848 12866589 complement(2251039..2252778) 1 NC_017310.1 PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: dde:Dde_2344 hypothetical protein; fibronectin-binding A domain-containing protein 2252778 12866589 Deval_1998 Desulfovibrio vulgaris RCH1 fibronectin-binding A domain-containing protein YP_005702784.1 2251039 R 573059 CDS YP_005702785.1 387153849 12866590 complement(2252798..2253160) 1 NC_017310.1 TIGRFAM: RNA polymerase-binding protein DksA; KEGG: dde:Dde_2345 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 2253160 12866590 Deval_1999 Desulfovibrio vulgaris RCH1 TraR/DksA family transcriptional regulator YP_005702785.1 2252798 R 573059 CDS YP_005702786.1 387153850 12866591 2253607..2253738 1 NC_017310.1 hypothetical protein 2253738 12866591 Deval_2000 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702786.1 2253607 D 573059 CDS YP_005702787.1 387153851 12866596 complement(2254349..2254708) 1 NC_017310.1 KEGG: rbi:RB2501_03715 molybdopterin oxidoreductase, iron-sulfur binding subunit; hypothetical protein 2254708 12866596 Deval_2001 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702787.1 2254349 R 573059 CDS YP_005702788.1 387153852 12866597 complement(2254718..2255734) 1 NC_017310.1 KEGG: bgl:bglu_4p0110 YadA C-terminal domain protein; hypothetical protein 2255734 12866597 Deval_2002 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702788.1 2254718 R 573059 CDS YP_005702789.1 387153853 12866598 complement(2255736..2259776) 1 NC_017310.1 KEGG: bra:BRADO3646 tail fiber protein; hypothetical protein 2259776 12866598 Deval_2003 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702789.1 2255736 R 573059 CDS YP_005702790.1 387153854 12866599 complement(2259766..2260191) 1 NC_017310.1 PFAM: NLP/P60 protein; KEGG: bra:BRADO3645 tail assembly protein homolog; NLP/P60 protein 2260191 12866599 Deval_2004 Desulfovibrio vulgaris RCH1 NLP/P60 protein YP_005702790.1 2259766 R 573059 CDS YP_005702791.1 387153855 12866600 complement(2260191..2260700) 1 NC_017310.1 PFAM: Domain of unknown function DUF1833; KEGG: bra:BRADO3644 hypothetical protein; hypothetical protein 2260700 12866600 Deval_2005 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702791.1 2260191 R 573059 CDS YP_005702792.1 387153856 12866601 complement(2260697..2261062) 1 NC_017310.1 KEGG: xau:Xaut_3718 hypothetical protein; hypothetical protein 2261062 12866601 Deval_2006 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702792.1 2260697 R 573059 CDS YP_005702793.1 387153857 12866602 complement(2261062..2263983) 1 NC_017310.1 KEGG: hth:HTH_0891 phage tail tape measure protein; hypothetical protein 2263983 12866602 Deval_2007 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702793.1 2261062 R 573059 CDS YP_005702794.1 387153858 12866604 complement(2264282..2264632) 1 NC_017310.1 KEGG: pfo:Pfl01_1886 heat shock protein HSP70; hypothetical protein 2264632 12866604 Deval_2009 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702794.1 2264282 R 573059 CDS YP_005702795.1 387153859 12866605 complement(2264641..2265585) 1 NC_017310.1 KEGG: rsq:Rsph17025_3706 hypothetical protein; hypothetical protein 2265585 12866605 Deval_2010 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702795.1 2264641 R 573059 CDS YP_005702796.1 387153860 12866606 complement(2265603..2266070) 1 NC_017310.1 KEGG: pmf:P9303_01621 glutathione peroxidase; hypothetical protein 2266070 12866606 Deval_2011 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702796.1 2265603 R 573059 CDS YP_005702797.1 387153861 12866607 complement(2266067..2266777) 1 NC_017310.1 KEGG: aav:Aave_3619 extracellular solute-binding protein; hypothetical protein 2266777 12866607 Deval_2012 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702797.1 2266067 R 573059 CDS YP_005702798.1 387153862 12866608 complement(2266777..2267127) 1 NC_017310.1 KEGG: bbr:BB2632 3-hydroxyisobutyrate dehydrogenase; hypothetical protein 2267127 12866608 Deval_2013 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702798.1 2266777 R 573059 CDS YP_005702799.1 387153863 12866609 complement(2267127..2267291) 1 NC_017310.1 KEGG: saq:Sare_4128 peptidase M16 domain-containing protein; peptidase M16 domain-containing protein 2267291 12866609 Deval_2014 Desulfovibrio vulgaris RCH1 peptidase M16 domain-containing protein YP_005702799.1 2267127 R 573059 CDS YP_005702800.1 387153864 12866610 complement(2267284..2267694) 1 NC_017310.1 KEGG: cme:CMT185C probable MAP kinase kinase kinase (MAP3K); hypothetical protein 2267694 12866610 Deval_2015 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702800.1 2267284 R 573059 CDS YP_005702801.1 387153865 12866611 complement(2267691..2267840) 1 NC_017310.1 KEGG: dsa:Desal_2965 hypothetical protein; hypothetical protein 2267840 12866611 Deval_2016 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702801.1 2267691 R 573059 CDS YP_005702802.1 387153866 12866612 complement(2267837..2268352) 1 NC_017310.1 PFAM: Lytic transglycosylase catalytic; KEGG: dma:DMR_25140 hypothetical protein; lytic transglycosylase 2268352 12866612 Deval_2017 Desulfovibrio vulgaris RCH1 lytic transglycosylase YP_005702802.1 2267837 R 573059 CDS YP_005702803.1 387153867 12866613 complement(2268360..2268815) 1 NC_017310.1 KEGG: dma:DMR_25100 hypothetical membrane protein; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; toxin secretion/phage lysis holin 2268815 12866613 Deval_2018 Desulfovibrio vulgaris RCH1 toxin secretion/phage lysis holin YP_005702803.1 2268360 R 573059 CDS YP_005702804.1 387153868 12866614 complement(2268888..2269097) 1 NC_017310.1 KEGG: SH3 type 3 domain protein; hypothetical protein 2269097 12866614 Deval_2019 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702804.1 2268888 R 573059 CDS YP_005702805.1 387153869 12866615 complement(2269100..2270125) 1 NC_017310.1 KEGG: lhk:LHK_01651 putative capsid protein of prophage; hypothetical protein 2270125 12866615 Deval_2020 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702805.1 2269100 R 573059 CDS YP_005702806.1 387153870 12866616 complement(2270136..2270504) 1 NC_017310.1 KEGG: xal:XALc_0211 hypothetical phage-related protein; hypothetical protein 2270504 12866616 Deval_2021 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702806.1 2270136 R 573059 CDS YP_005702807.1 387153871 12866617 complement(2270508..2271785) 1 NC_017310.1 PFAM: peptidase S49; KEGG: rsh:Rsph17029_3360 peptidase S49; peptidase S49 2271785 12866617 Deval_2022 Desulfovibrio vulgaris RCH1 peptidase S49 YP_005702807.1 2270508 R 573059 CDS YP_005702808.1 387153872 12866618 complement(2271745..2273298) 1 NC_017310.1 KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family 2273298 12866618 Deval_2023 Desulfovibrio vulgaris RCH1 phage portal protein, lambda family YP_005702808.1 2271745 R 573059 CDS YP_005702809.1 387153873 12866619 complement(2273298..2273519) 1 NC_017310.1 KEGG: str:Sterm_2513 hypothetical protein; hypothetical protein 2273519 12866619 Deval_2024 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702809.1 2273298 R 573059 CDS YP_005702810.1 387153874 12866620 complement(2273751..2274428) 1 NC_017310.1 KEGG: bcu:BCAH820_B0246 hypothetical protein; hypothetical protein 2274428 12866620 Deval_2025 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702810.1 2273751 R 573059 CDS YP_005702811.1 387153875 12866621 complement(2274482..2279269) 1 NC_017310.1 KEGG: bgl:bglu_1g24100 adenine specific DNA methyltransferase, putative; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; type III restriction protein res subunit 2279269 12866621 Deval_2026 Desulfovibrio vulgaris RCH1 type III restriction protein res subunit YP_005702811.1 2274482 R 573059 CDS YP_005702812.1 387153876 12866623 complement(2279875..2281248) 1 NC_017310.1 KEGG: pin:Ping_3110 hypothetical protein; hypothetical protein 2281248 12866623 Deval_2028 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702812.1 2279875 R 573059 CDS YP_005702813.1 387153877 12866624 complement(2281514..2282356) 1 NC_017310.1 PFAM: Integrase catalytic region; KEGG: nmu:Nmul_A2024 integrase catalytic subunit; integrase catalytic subunit 2282356 12866624 Deval_2029 Desulfovibrio vulgaris RCH1 integrase catalytic subunit YP_005702813.1 2281514 R 573059 CDS YP_005702814.1 387153878 12866626 2283138..2284016 1 NC_017310.1 KEGG: mmw:Mmwyl1_2510 Rha family phage regulatory protein; TIGRFAM: phage regulatory protein, Rha family; PFAM: Phage regulatory protein, Rha-like; phage regulatory protein, Rha family 2284016 12866626 Deval_2031 Desulfovibrio vulgaris RCH1 phage regulatory protein, Rha family YP_005702814.1 2283138 D 573059 CDS YP_005702815.1 387153879 12866627 2284406..2285137 1 NC_017310.1 KEGG: bay:RBAM_006060 YdzE; hypothetical protein 2285137 12866627 Deval_2032 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702815.1 2284406 D 573059 CDS YP_005702816.1 387153880 12866628 complement(2285172..2285390) 1 NC_017310.1 KEGG: cai:Caci_8339 excision promoter, Xis; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory; excisionase family DNA binding domain-containing protein 2285390 12866628 Deval_2033 Desulfovibrio vulgaris RCH1 excisionase family DNA binding domain-containing protein YP_005702816.1 2285172 R 573059 CDS YP_005702817.1 387153881 12866629 complement(2285394..2287373) 1 NC_017310.1 PFAM: terminase GpA; KEGG: dsa:Desal_2143 terminase GpA; terminase GpA 2287373 12866629 Deval_2034 Desulfovibrio vulgaris RCH1 terminase GpA YP_005702817.1 2285394 R 573059 CDS YP_005702818.1 387153882 12866630 complement(2287363..2288376) 1 NC_017310.1 KEGG: dsa:Desal_2144 hypothetical protein; hypothetical protein 2288376 12866630 Deval_2035 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702818.1 2287363 R 573059 CDS YP_005702819.1 387153883 12866631 complement(2288805..2289335) 1 NC_017310.1 KEGG: ace:Acel_0145 Rieske (2Fe-2S) domain-containing protein; hypothetical protein 2289335 12866631 Deval_2036 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702819.1 2288805 R 573059 CDS YP_005702820.1 387153884 12866632 complement(2289752..2292244) 1 NC_017310.1 KEGG: dsa:Desal_2146 phage/plasmid primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4 ; TOPRIM domain-containing protein; phage/plasmid primase, P4 family 2292244 12866632 Deval_2037 Desulfovibrio vulgaris RCH1 phage/plasmid primase, P4 family YP_005702820.1 2289752 R 573059 CDS YP_005702821.1 387153885 12866633 complement(2292325..2292765) 1 NC_017310.1 KEGG: dde:Dde_1017 hypothetical protein; hypothetical protein 2292765 12866633 Deval_2038 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702821.1 2292325 R 573059 CDS YP_005702822.1 387153886 12866634 2293111..2293404 1 NC_017310.1 KEGG: npu:Npun_R3728 SpoIID/LytB domain-containing protein; hypothetical protein 2293404 12866634 Deval_2039 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702822.1 2293111 D 573059 CDS YP_005702823.1 387153887 12866635 complement(2293343..2293555) 1 NC_017310.1 KEGG: scl:sce6804 hypothetical protein; hypothetical protein 2293555 12866635 Deval_2040 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702823.1 2293343 R 573059 CDS YP_005702824.1 387153888 12866636 2293870..2293974 1 NC_017310.1 hypothetical protein 2293974 12866636 Deval_2041 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702824.1 2293870 D 573059 CDS YP_005702825.1 387153889 12866637 2293967..2294122 1 NC_017310.1 KEGG: tfu:Tfu_0403 hypothetical protein; hypothetical protein 2294122 12866637 Deval_2042 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702825.1 2293967 D 573059 CDS YP_005702826.1 387153890 12866638 2294129..2294227 1 NC_017310.1 hypothetical protein 2294227 12866638 Deval_2043 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702826.1 2294129 D 573059 CDS YP_005702827.1 387153891 12866639 2294224..2294703 1 NC_017310.1 KEGG: lbz:LbrM13_V2.1230 hypothetical protein; hypothetical protein 2294703 12866639 Deval_2044 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702827.1 2294224 D 573059 CDS YP_005702828.1 387153892 12866640 2294750..2295439 1 NC_017310.1 KEGG: dma:DMR_14730 hypothetical protein; hypothetical protein 2295439 12866640 Deval_2045 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702828.1 2294750 D 573059 CDS YP_005702829.1 387153893 12866641 2295432..2295689 1 NC_017310.1 KEGG: lma:LmjF23.0350 hypothetical protein; hypothetical protein 2295689 12866641 Deval_2046 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702829.1 2295432 D 573059 CDS YP_005702830.1 387153894 12866642 2295997..2296284 1 NC_017310.1 KEGG: oca:OCAR_7446 phage transcriptional regulator, AlpA; hypothetical protein 2296284 12866642 Deval_2047 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702830.1 2295997 D 573059 CDS YP_005702831.1 387153895 12866643 complement(2296285..2297364) 1 NC_017310.1 PFAM: integrase family protein; KEGG: dol:Dole_2954 integrase family protein; integrase family protein 2297364 12866643 Deval_2048 Desulfovibrio vulgaris RCH1 integrase family protein YP_005702831.1 2296285 R 573059 CDS YP_005702832.1 387153896 12866644 complement(2297739..2297936) 1 NC_017310.1 KEGG: dma:DMR_03370 hypothetical protein; hypothetical protein 2297936 12866644 Deval_2049 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702832.1 2297739 R 573059 CDS YP_005702833.1 387153897 12866645 2298335..2298715 1 NC_017310.1 KEGG: ank:AnaeK_4404 hypothetical protein; hypothetical protein 2298715 12866645 Deval_2050 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702833.1 2298335 D 573059 CDS YP_005702834.1 387153898 12866647 2299523..2300680 1 NC_017310.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_0050 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2300680 12866647 Deval_2052 Desulfovibrio vulgaris RCH1 iron-containing alcohol dehydrogenase YP_005702834.1 2299523 D 573059 CDS YP_005702835.1 387153899 12866648 complement(2300991..2302508) 1 NC_017310.1 KEGG: dal:Dalk_0906 lytic transglycosylase catalytic; PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2302508 12866648 Deval_2053 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005702835.1 2300991 R 573059 CDS YP_005702836.1 387153900 12866649 2302833..2303207 1 NC_017310.1 KEGG: dde:Dde_0809 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2303207 12866649 Deval_2054 Desulfovibrio vulgaris RCH1 endoribonuclease L-PSP YP_005702836.1 2302833 D 573059 CDS YP_005702837.1 387153901 12866650 2303317..2304705 1 NC_017310.1 KEGG: cko:CKO_02849 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; tryptophanase 2304705 12866650 Deval_2055 Desulfovibrio vulgaris RCH1 tryptophanase YP_005702837.1 2303317 D 573059 CDS YP_005702838.1 387153902 12866651 2304876..2306153 1 NC_017310.1 KEGG: yen:YE0649 tryptophan permease; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease; aromatic amino acid transporter 2306153 12866651 Deval_2056 Desulfovibrio vulgaris RCH1 aromatic amino acid transporter YP_005702838.1 2304876 D 573059 CDS YP_005702839.1 387153903 12866652 complement(2306459..2307130) 1 NC_017310.1 PFAM: YheO-like domain-containing protein; KEGG: dde:Dde_0810 hypothetical protein; YheO-like domain-containing protein 2307130 12866652 Deval_2057 Desulfovibrio vulgaris RCH1 YheO-like domain-containing protein YP_005702839.1 2306459 R 573059 CDS YP_005702840.1 387153904 12866654 2307842..2308564 1 NC_017310.1 PFAM: methyltransferase small; KEGG: dds:Ddes_1002 methyltransferase small; methyltransferase small 2308564 12866654 Deval_2058 Desulfovibrio vulgaris RCH1 methyltransferase small YP_005702840.1 2307842 D 573059 CDS YP_005702841.1 387153905 12866655 2308561..2310288 1 NC_017310.1 PFAM: protein of unknown function DUF181; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dds:Ddes_1001 protein of unknown function DUF181; hypothetical protein 2310288 12866655 Deval_2059 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702841.1 2308561 D 573059 CDS YP_005702842.1 387153906 12866656 complement(2310435..2313053) 1 NC_017310.1 KEGG: dde:Dde_2351 hypothetical protein; hypothetical protein 2313053 12866656 Deval_2060 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702842.1 2310435 R 573059 CDS YP_005702843.1 387153907 12866657 2313084..2313446 1 NC_017310.1 KEGG: dde:Dde_2352 hypothetical protein; hypothetical protein 2313446 12866657 Deval_2061 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702843.1 2313084 D 573059 CDS YP_005702844.1 387153908 12866658 2313791..2314492 1 NC_017310.1 PFAM: nuclease (SNase domain-containing protein); KEGG: dde:Dde_2354 nuclease (SNase-like); nuclease 2314492 12866658 Deval_2062 Desulfovibrio vulgaris RCH1 nuclease YP_005702844.1 2313791 D 573059 CDS YP_005702845.1 387153909 12866659 2314897..2315166 1 NC_017310.1 KEGG: drt:Dret_1753 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 2315166 12866659 Deval_2063 Desulfovibrio vulgaris RCH1 RNP-1 like RNA-binding protein YP_005702845.1 2314897 D 573059 CDS YP_005702846.1 387153910 12866660 2315246..2315509 1 NC_017310.1 KEGG: dsa:Desal_2394 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor IF-1 2315509 12866660 Deval_2064 Desulfovibrio vulgaris RCH1 translation initiation factor IF-1 YP_005702846.1 2315246 D 573059 CDS YP_005702847.1 387153911 12866661 complement(2316044..2316550) 1 NC_017310.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpc:Cpar_2032 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2316550 12866661 Deval_2065 Desulfovibrio vulgaris RCH1 N-acetyltransferase GCN5 YP_005702847.1 2316044 R 573059 CDS YP_005702848.1 387153912 12866662 complement(2316622..2317668) 1 NC_017310.1 PFAM: GTPase EngC; KEGG: dba:Dbac_0600 GTPase EngC; GTPase EngC 2317668 12866662 Deval_2066 Desulfovibrio vulgaris RCH1 GTPase EngC YP_005702848.1 2316622 R 573059 CDS YP_005702849.1 387153913 12866663 2318043..2318312 1 NC_017310.1 KEGG: cdf:CD3324 hypothetical protein; hypothetical protein 2318312 12866663 Deval_2067 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702849.1 2318043 D 573059 CDS YP_005702850.1 387153914 12866664 complement(2318503..2319033) 1 NC_017310.1 KEGG: dds:Ddes_0455 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 2319033 12866664 Deval_2068 Desulfovibrio vulgaris RCH1 single-strand binding protein YP_005702850.1 2318503 R 573059 CDS YP_005702851.1 387153915 12866665 complement(2319073..2319417) 1 NC_017310.1 KEGG: dds:Ddes_0456 hypothetical protein; hypothetical protein 2319417 12866665 Deval_2069 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702851.1 2319073 R 573059 CDS YP_005702852.1 387153916 12866666 complement(2319420..2320070) 1 NC_017310.1 KEGG: dde:Dde_1543 hypothetical protein; hypothetical protein 2320070 12866666 Deval_2070 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702852.1 2319420 R 573059 CDS YP_005702853.1 387153917 12866667 complement(2320089..2322344) 1 NC_017310.1 KEGG: dde:Dde_1542 acetyl-CoA carboxylase; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; Acetyl-CoA carboxylase 2322344 12866667 Deval_2071 Desulfovibrio vulgaris RCH1 Acetyl-CoA carboxylase YP_005702853.1 2320089 R 573059 CDS YP_005702854.1 387153918 12866668 complement(2322418..2323833) 1 NC_017310.1 KEGG: dde:Dde_1541 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; pyruvate carboxylase 2323833 12866668 Deval_2072 Desulfovibrio vulgaris RCH1 pyruvate carboxylase YP_005702854.1 2322418 R 573059 CDS YP_005702855.1 387153919 12866669 complement(2323814..2324257) 1 NC_017310.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1540 hypothetical protein; type IV pilus assembly PilZ 2324257 12866669 Deval_2073 Desulfovibrio vulgaris RCH1 type IV pilus assembly PilZ YP_005702855.1 2323814 R 573059 CDS YP_005702856.1 387153920 12866670 complement(2324262..2324996) 1 NC_017310.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein, putative; OmpA/MotB domain-containing protein 2324996 12866670 Deval_2074 Desulfovibrio vulgaris RCH1 OmpA/MotB domain-containing protein YP_005702856.1 2324262 R 573059 CDS YP_005702857.1 387153921 12866671 complement(2324980..2325741) 1 NC_017310.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel 2325741 12866671 Deval_2075 Desulfovibrio vulgaris RCH1 MotA/TolQ/ExbB proton channel YP_005702857.1 2324980 R 573059 CDS YP_005702858.1 387153922 12866672 2325857..2326681 1 NC_017310.1 KEGG: dde:Dde_1537 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; purine nucleoside phosphorylase I 2326681 12866672 Deval_2076 Desulfovibrio vulgaris RCH1 purine nucleoside phosphorylase I YP_005702858.1 2325857 D 573059 CDS YP_005702859.1 387153923 12866673 2326777..2328726 1 NC_017310.1 KEGG: lip:LI0145 GTP-binding protein LepA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein TypA 2328726 12866673 Deval_2077 Desulfovibrio vulgaris RCH1 GTP-binding protein TypA YP_005702859.1 2326777 D 573059 CDS YP_005702860.1 387153924 12866674 2329162..2329530 1 NC_017310.1 KEGG: dde:Dde_1532 hypothetical protein; hypothetical protein 2329530 12866674 Deval_2078 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702860.1 2329162 D 573059 CDS YP_005702861.1 387153925 12866675 complement(2329795..2330772) 1 NC_017310.1 PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1531 hypothetical protein; alpha/beta hydrolase fold protein 2330772 12866675 Deval_2079 Desulfovibrio vulgaris RCH1 alpha/beta hydrolase fold protein YP_005702861.1 2329795 R 573059 CDS YP_005702862.1 387153926 12866676 2330957..2331097 1 NC_017310.1 hypothetical protein 2331097 12866676 Deval_2080 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702862.1 2330957 D 573059 CDS YP_005702863.1 387153927 12866677 2331117..2332286 1 NC_017310.1 PFAM: HI0933 family protein; KEGG: dde:Dde_1530 hypothetical protein; hypothetical protein 2332286 12866677 Deval_2081 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702863.1 2331117 D 573059 CDS YP_005702864.1 387153928 12866678 2332395..2332718 1 NC_017310.1 Contains selenocysteine; manually curated; manually curated; KEGG: dma:DMR_38750 hypothetical protein; hypothetical protein 2332718 12866678 Deval_2082 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702864.1 2332395 D 573059 CDS YP_005702865.1 387153929 12866679 complement(2332777..2333739) 1 NC_017310.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: dde:Dde_1529 adenosylcobinamide-phosphate synthase; cobalamin biosynthesis protein CbiB 2333739 12866679 Deval_2083 Desulfovibrio vulgaris RCH1 cobalamin biosynthesis protein CbiB YP_005702865.1 2332777 R 573059 CDS YP_005702866.1 387153930 12866680 complement(2333736..2334212) 1 NC_017310.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1528 RNA methyltransferase; tRNA/rRNA methyltransferase SpoU 2334212 12866680 Deval_2084 Desulfovibrio vulgaris RCH1 tRNA/rRNA methyltransferase SpoU YP_005702866.1 2333736 R 573059 CDS YP_005702867.1 387153931 12866681 complement(2334458..2335903) 1 NC_017310.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cpc:Cpar_1998 glycoside hydrolase family 3 domain protein; glycoside hydrolase family protein 2335903 12866681 Deval_2085 Desulfovibrio vulgaris RCH1 glycoside hydrolase family protein YP_005702867.1 2334458 R 573059 CDS YP_005702868.1 387153932 12866682 complement(2335903..2337555) 1 NC_017310.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein; hydantoinase/oxoprolinase 2337555 12866682 Deval_2086 Desulfovibrio vulgaris RCH1 hydantoinase/oxoprolinase YP_005702868.1 2335903 R 573059 CDS YP_005702869.1 387153933 12866683 complement(2337557..2338843) 1 NC_017310.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: dde:Dde_2283 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 2338843 12866683 Deval_2087 Desulfovibrio vulgaris RCH1 4-hydroxythreonine-4-phosphate dehydrogenase YP_005702869.1 2337557 R 573059 CDS YP_005702870.1 387153934 12866684 complement(2339048..2339995) 1 NC_017310.1 KEGG: dde:Dde_2284 asparaginase; PFAM: peptidase T2 asparaginase 2; asparaginase 2339995 12866684 Deval_2088 Desulfovibrio vulgaris RCH1 asparaginase YP_005702870.1 2339048 R 573059 CDS YP_005702871.1 387153935 12866685 complement(2340281..2342203) 1 NC_017310.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: dde:Dde_2285 glycogen branching enzyme; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein 2342203 12866685 Deval_2089 Desulfovibrio vulgaris RCH1 1,4-alpha-glucan-branching protein YP_005702871.1 2340281 R 573059 CDS YP_005702872.1 387153936 12866686 complement(2342200..2343669) 1 NC_017310.1 KEGG: dde:Dde_2286 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1; glycogen/starch synthase 2343669 12866686 Deval_2090 Desulfovibrio vulgaris RCH1 glycogen/starch synthase YP_005702872.1 2342200 R 573059 CDS YP_005702873.1 387153937 12866687 complement(2343698..2344159) 1 NC_017310.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein; NUDIX hydrolase 2344159 12866687 Deval_2091 Desulfovibrio vulgaris RCH1 NUDIX hydrolase YP_005702873.1 2343698 R 573059 CDS YP_005702874.1 387153938 12866688 complement(2344908..2345144) 1 NC_017310.1 KEGG: dde:Dde_2315 hypothetical protein; hypothetical protein 2345144 12866688 Deval_2092 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702874.1 2344908 R 573059 CDS YP_005702875.1 387153939 12866689 2345234..2347405 1 NC_017310.1 KEGG: dde:Dde_2316 RNA-binding domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; Tex-like protein 2347405 12866689 Deval_2093 Desulfovibrio vulgaris RCH1 Tex-like protein YP_005702875.1 2345234 D 573059 CDS YP_005702876.1 387153940 12866690 complement(2347578..2348192) 1 NC_017310.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; KEGG: cvi:CV_3739 peroxidase; alkyl hydroperoxide reductase 2348192 12866690 Deval_2094 Desulfovibrio vulgaris RCH1 alkyl hydroperoxide reductase YP_005702876.1 2347578 R 573059 CDS YP_005702877.1 387153941 12866691 complement(2348473..2350128) 1 NC_017310.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2317 AMP-binding protein; AMP-dependent synthetase and ligase 2350128 12866691 Deval_2095 Desulfovibrio vulgaris RCH1 AMP-dependent synthetase and ligase YP_005702877.1 2348473 R 573059 CDS YP_005702878.1 387153942 12866692 complement(2350461..2351021) 1 NC_017310.1 KEGG: dde:Dde_2318 transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; cupin 2351021 12866692 Deval_2096 Desulfovibrio vulgaris RCH1 cupin YP_005702878.1 2350461 R 573059 CDS YP_005702879.1 387153943 12866693 complement(2351238..2352752) 1 NC_017310.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: dde:Dde_2320 DnaA family protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 2352752 12866693 Deval_2097 Desulfovibrio vulgaris RCH1 chromosomal replication initiator protein DnaA YP_005702879.1 2351238 R 573059 CDS YP_005702880.1 387153944 12866694 complement(2353033..2353770) 1 NC_017310.1 TIGRFAM: thymidylate synthase, flavin-dependent; KEGG: dde:Dde_2321 FAD-dependent thymidylate synthase; PFAM: thymidylate synthase complementing protein ThyX; thymidylate synthase, flavin-dependent 2353770 12866694 Deval_2098 Desulfovibrio vulgaris RCH1 thymidylate synthase, flavin-dependent YP_005702880.1 2353033 R 573059 CDS YP_005702881.1 387153945 12866695 complement(2353788..2354750) 1 NC_017310.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: dde:Dde_2322 Holliday junction DNA helicase RuvB; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 2354750 12866695 Deval_2099 Desulfovibrio vulgaris RCH1 Holliday junction DNA helicase RuvB YP_005702881.1 2353788 R 573059 CDS YP_005702882.1 387153946 12866696 complement(2354751..2355359) 1 NC_017310.1 KEGG: dde:Dde_2323 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; Holliday junction DNA helicase RuvA 2355359 12866696 Deval_2100 Desulfovibrio vulgaris RCH1 Holliday junction DNA helicase RuvA YP_005702882.1 2354751 R 573059 CDS YP_005702883.1 387153947 12866697 complement(2355733..2356233) 1 NC_017310.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: dde:Dde_2324 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 2356233 12866697 Deval_2101 Desulfovibrio vulgaris RCH1 crossover junction endodeoxyribonuclease RuvC YP_005702883.1 2355733 R 573059 CDS YP_005702884.1 387153948 12866698 complement(2356308..2357051) 1 NC_017310.1 PFAM: protein of unknown function DUF28; KEGG: dde:Dde_2325 hypothetical protein; hypothetical protein 2357051 12866698 Deval_2102 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702884.1 2356308 R 573059 CDS YP_005702885.1 387153949 12866699 complement(2357105..2357719) 1 NC_017310.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dde:Dde_2326 ribosomal RNA large subunit methyltransferase J; ribosomal RNA methyltransferase RrmJ/FtsJ 2357719 12866699 Deval_2103 Desulfovibrio vulgaris RCH1 ribosomal RNA methyltransferase RrmJ/FtsJ YP_005702885.1 2357105 R 573059 CDS YP_005702886.1 387153950 12866700 2357775..2359589 1 NC_017310.1 KEGG: dde:Dde_2327 hypothetical protein; hypothetical protein 2359589 12866700 Deval_2104 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702886.1 2357775 D 573059 CDS YP_005702887.1 387153951 12866702 complement(2360217..2362154) 1 NC_017310.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: ccv:CCV52592_1393 putative high-molecular-weight surface-exposed protein; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein 2362154 12866702 Deval_2105 Desulfovibrio vulgaris RCH1 outer membrane autotransporter barrel domain-containing protein YP_005702887.1 2360217 R 573059 CDS YP_005702888.1 387153952 12866703 complement(2362651..2362944) 1 NC_017310.1 KEGG: dsa:Desal_3532 hypothetical protein; hypothetical protein 2362944 12866703 Deval_2106 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702888.1 2362651 R 573059 CDS YP_005702889.1 387153953 12866704 complement(2363246..2363398) 1 NC_017310.1 KEGG: dde:Dde_0689 hypothetical protein; hypothetical protein 2363398 12866704 Deval_2107 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702889.1 2363246 R 573059 CDS YP_005702890.1 387153954 12866705 complement(2363426..2363539) 1 NC_017310.1 KEGG: dsa:Desal_3531 hypothetical protein; hypothetical protein 2363539 12866705 Deval_2108 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702890.1 2363426 R 573059 CDS YP_005702891.1 387153955 12866706 complement(2363560..2364453) 1 NC_017310.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: dsa:Desal_3529 glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family 2364453 12866706 Deval_2109 Desulfovibrio vulgaris RCH1 glycyl-radical enzyme activating protein family YP_005702891.1 2363560 R 573059 CDS YP_005702892.1 387153956 12866707 complement(2364565..2367018) 1 NC_017310.1 PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dsa:Desal_3528 formate C-acetyltransferase; pyruvate formate-lyase PFL 2367018 12866707 Deval_2110 Desulfovibrio vulgaris RCH1 pyruvate formate-lyase PFL YP_005702892.1 2364565 R 573059 CDS YP_005702893.1 387153957 12866708 2367428..2368966 1 NC_017310.1 KEGG: dsa:Desal_3527 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 2368966 12866708 Deval_2111 Desulfovibrio vulgaris RCH1 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_005702893.1 2367428 D 573059 CDS YP_005702894.1 387153958 12866709 complement(2369048..2369794) 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: dsa:Desal_3526 protein of unknown function DUF81; hypothetical protein 2369794 12866709 Deval_2112 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702894.1 2369048 R 573059 CDS YP_005702895.1 387153959 12866710 complement(2369775..2370386) 1 NC_017310.1 KEGG: dsa:Desal_3525 hypothetical protein; hypothetical protein 2370386 12866710 Deval_2113 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702895.1 2369775 R 573059 CDS YP_005702896.1 387153960 12866711 complement(2370450..2371301) 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bpa:BPP1098 hypothetical protein; hypothetical protein 2371301 12866711 Deval_2114 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702896.1 2370450 R 573059 CDS YP_005702897.1 387153961 12866712 2371790..2373298 1 NC_017310.1 PFAM: amino acid permease-associated region; KEGG: dsa:Desal_3524 amino acid permease-associated region; amino acid permease 2373298 12866712 Deval_2115 Desulfovibrio vulgaris RCH1 amino acid permease YP_005702897.1 2371790 D 573059 CDS YP_005702898.1 387153962 12866713 complement(2373454..2375682) 1 NC_017310.1 KEGG: dma:DMR_09210 putative two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor hybrid histidine kinase 2375682 12866713 Deval_2116 Desulfovibrio vulgaris RCH1 integral membrane sensor hybrid histidine kinase YP_005702898.1 2373454 R 573059 CDS YP_005702899.1 387153963 12866714 2375925..2377475 1 NC_017310.1 KEGG: dsa:Desal_0583 hypothetical protein; hypothetical protein 2377475 12866714 Deval_2117 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702899.1 2375925 D 573059 CDS YP_005702900.1 387153964 12866715 2377812..2378324 1 NC_017310.1 KEGG: dde:Dde_1072 hypothetical protein; hypothetical protein 2378324 12866715 Deval_2118 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702900.1 2377812 D 573059 CDS YP_005702901.1 387153965 12866716 complement(2378747..2380258) 1 NC_017310.1 KEGG: dde:Dde_1074 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 2380258 12866716 Deval_2119 Desulfovibrio vulgaris RCH1 L-lactate transport YP_005702901.1 2378747 R 573059 CDS YP_005702902.1 387153966 12866717 2380669..2384571 1 NC_017310.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dds:Ddes_1880 NADH dehydrogenase (quinone); NADH/ubiquinone/plastoquinone 2384571 12866717 Deval_2120 Desulfovibrio vulgaris RCH1 NADH/ubiquinone/plastoquinone YP_005702902.1 2380669 D 573059 CDS YP_005702903.1 387153967 12866718 2384575..2385540 1 NC_017310.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dds:Ddes_1881 respiratory-chain NADH dehydrogenase subunit 1; respiratory-chain NADH dehydrogenase subunit 1 2385540 12866718 Deval_2121 Desulfovibrio vulgaris RCH1 respiratory-chain NADH dehydrogenase subunit 1 YP_005702903.1 2384575 D 573059 CDS YP_005702904.1 387153968 12866719 2385553..2385987 1 NC_017310.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dds:Ddes_1882 NADH ubiquinone oxidoreductase 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2385987 12866719 Deval_2122 Desulfovibrio vulgaris RCH1 NADH ubiquinone oxidoreductase 20 kDa subunit YP_005702904.1 2385553 D 573059 CDS YP_005702905.1 387153969 12866720 2385989..2386624 1 NC_017310.1 KEGG: dds:Ddes_1883 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2386624 12866720 Deval_2123 Desulfovibrio vulgaris RCH1 4Fe-4S ferredoxin YP_005702905.1 2385989 D 573059 CDS YP_005702906.1 387153970 12866721 2386621..2387166 1 NC_017310.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dds:Ddes_1884 NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit 2387166 12866721 Deval_2124 Desulfovibrio vulgaris RCH1 NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_005702906.1 2386621 D 573059 CDS YP_005702907.1 387153971 12866722 2387163..2388263 1 NC_017310.1 KEGG: chy:CHY_1827 carbon monoxide-induced hydrogenase, large subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (quinone) 2388263 12866722 Deval_2125 Desulfovibrio vulgaris RCH1 NADH dehydrogenase (quinone) YP_005702907.1 2387163 D 573059 CDS YP_005702908.1 387153972 12866723 2388272..2388634 1 NC_017310.1 KEGG: gbm:Gbem_0070 hydrogenase nickel insertion protein HypA; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; hydrogenase nickel incorporation protein HypA 2388634 12866723 Deval_2126 Desulfovibrio vulgaris RCH1 hydrogenase nickel incorporation protein HypA YP_005702908.1 2388272 D 573059 CDS YP_005702909.1 387153973 12866724 2388631..2389152 1 NC_017310.1 KEGG: dds:Ddes_1887 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2389152 12866724 Deval_2127 Desulfovibrio vulgaris RCH1 4Fe-4S ferredoxin YP_005702909.1 2388631 D 573059 CDS YP_005702910.1 387153974 12866725 complement(2389349..2390428) 1 NC_017310.1 PFAM: Methicillin resistance protein; KEGG: dde:Dde_1247 femAB family protein; Methicillin resistance protein 2390428 12866725 Deval_2128 Desulfovibrio vulgaris RCH1 Methicillin resistance protein YP_005702910.1 2389349 R 573059 CDS YP_005702911.1 387153975 12866726 complement(2390935..2393265) 1 NC_017310.1 KEGG: dma:DMR_16780 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2393265 12866726 Deval_2129 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005702911.1 2390935 R 573059 CDS YP_005702912.1 387153976 12866727 2393693..2394439 1 NC_017310.1 KEGG: dde:Dde_2516 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; monofunctional biosynthetic peptidoglycan transglycosylase 2394439 12866727 Deval_2130 Desulfovibrio vulgaris RCH1 monofunctional biosynthetic peptidoglycan transglycosylase YP_005702912.1 2393693 D 573059 CDS YP_005702913.1 387153977 12866728 complement(2394652..2395509) 1 NC_017310.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dsa:Desal_0674 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 2395509 12866728 Deval_2131 Desulfovibrio vulgaris RCH1 glycine betaine ABC transporter substrate-binding protein YP_005702913.1 2394652 R 573059 CDS YP_005702914.1 387153978 12866729 complement(2395667..2396518) 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2396518 12866729 Deval_2132 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005702914.1 2395667 R 573059 CDS YP_005702915.1 387153979 12866730 complement(2396515..2397708) 1 NC_017310.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; SMART: AAA ATPase; CBS domain containing protein; glycine betaine/L-proline ABC transporter ATPase 2397708 12866730 Deval_2133 Desulfovibrio vulgaris RCH1 glycine betaine/L-proline ABC transporter ATPase YP_005702915.1 2396515 R 573059 CDS YP_005702916.1 387153980 12866731 2398162..2400180 1 NC_017310.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: lip:LI0773 Kef-type K+ transport systems, membrane components; sodium/hydrogen exchanger 2400180 12866731 Deval_2134 Desulfovibrio vulgaris RCH1 sodium/hydrogen exchanger YP_005702916.1 2398162 D 573059 CDS YP_005702917.1 387153981 12866732 2400256..2401683 1 NC_017310.1 KEGG: mgm:Mmc1_2003 Sel1 domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 2401683 12866732 Deval_2135 Desulfovibrio vulgaris RCH1 Sel1 domain-containing protein repeat-containing protein YP_005702917.1 2400256 D 573059 CDS YP_005702918.1 387153982 12866733 2402011..2402640 1 NC_017310.1 PFAM: Putitive phosphate transport regulator; KEGG: dma:DMR_08640 hypothetical protein; Putative phosphate transport regulator 2402640 12866733 Deval_2136 Desulfovibrio vulgaris RCH1 Putative phosphate transport regulator YP_005702918.1 2402011 D 573059 CDS YP_005702919.1 387153983 12866734 2402633..2403643 1 NC_017310.1 PFAM: phosphate transporter; KEGG: dds:Ddes_1960 phosphate transporter; phosphate transporter 2403643 12866734 Deval_2137 Desulfovibrio vulgaris RCH1 phosphate transporter YP_005702919.1 2402633 D 573059 CDS YP_005702920.1 387153984 12866735 complement(2403741..2403962) 1 NC_017310.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; KEGG: dds:Ddes_1959 transcriptional regulator, TraR/DksA family; phage/conjugal plasmid C-4 type zinc finger protein, TraR family 2403962 12866735 Deval_2138 Desulfovibrio vulgaris RCH1 phage/conjugal plasmid C-4 type zinc finger protein, TraR family YP_005702920.1 2403741 R 573059 CDS YP_005702921.1 387153985 12866736 complement(2403974..2404465) 1 NC_017310.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: tdn:Suden_0251 hypothetical protein; hypothetical protein 2404465 12866736 Deval_2139 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702921.1 2403974 R 573059 CDS YP_005702922.1 387153986 12866737 2404727..2406814 1 NC_017310.1 KEGG: dsa:Desal_2891 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2406814 12866737 Deval_2140 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005702922.1 2404727 D 573059 CDS YP_005702923.1 387153987 12866738 2407043..2407789 1 NC_017310.1 KEGG: dde:Dde_1331 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2407789 12866738 Deval_2141 Desulfovibrio vulgaris RCH1 metallo-beta-lactamase family protein YP_005702923.1 2407043 D 573059 CDS YP_005702924.1 387153988 12866739 2408157..2409416 1 NC_017310.1 KEGG: plu:plu0967 insecticidal toxin complex protein TccC3; hypothetical protein 2409416 12866739 Deval_2142 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702924.1 2408157 D 573059 CDS YP_005702925.1 387153989 12866740 2409450..2409917 1 NC_017310.1 PFAM: Tir chaperone family protein; KEGG: pst:PSPTO_5353 type III chaperone protein ShcA; Tir chaperone family protein 2409917 12866740 Deval_2143 Desulfovibrio vulgaris RCH1 Tir chaperone family protein YP_005702925.1 2409450 D 573059 CDS YP_005702926.1 387153990 12866741 2410135..2410884 1 NC_017310.1 KEGG: dds:Ddes_1131 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; 6-phosphogluconolactonase 2410884 12866741 Deval_2144 Desulfovibrio vulgaris RCH1 6-phosphogluconolactonase YP_005702926.1 2410135 D 573059 CDS YP_005702927.1 387153991 12866742 complement(2411166..2411894) 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: dde:Dde_1317 hypothetical protein; hypothetical protein 2411894 12866742 Deval_2145 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702927.1 2411166 R 573059 CDS YP_005702928.1 387153992 12866743 2411977..2414565 1 NC_017310.1 TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: dde:Dde_1318 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; DNA topoisomerase III 2414565 12866743 Deval_2146 Desulfovibrio vulgaris RCH1 DNA topoisomerase III YP_005702928.1 2411977 D 573059 CDS YP_005702929.1 387153993 12866744 2414855..2416624 1 NC_017310.1 KEGG: dds:Ddes_0349 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2416624 12866744 Deval_2147 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005702929.1 2414855 D 573059 CDS YP_005702930.1 387153994 12866745 2417236..2417730 1 NC_017310.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin, putative; rubrerythrin 2417730 12866745 Deval_2148 Desulfovibrio vulgaris RCH1 rubrerythrin YP_005702930.1 2417236 D 573059 CDS YP_005702931.1 387153995 12866746 2417907..2418512 1 NC_017310.1 KEGG: dma:DMR_45900 OmpR family two-component response regulator; PFAM: transcriptional regulator domain-containing protein; SMART: transcriptional regulator domain-containing protein; putative winged helix family wo component transcriptional regulator 2418512 12866746 Deval_2149 Desulfovibrio vulgaris RCH1 putative winged helix family wo component transcriptional regulator YP_005702931.1 2417907 D 573059 CDS YP_005702932.1 387153996 12866747 2418496..2420376 1 NC_017310.1 PFAM: Carboxylyase-related protein; KEGG: dde:Dde_1323 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; carboxylyase 2420376 12866747 Deval_2150 Desulfovibrio vulgaris RCH1 carboxylyase YP_005702932.1 2418496 D 573059 CDS YP_005702933.1 387153997 12866748 2420585..2420821 1 NC_017310.1 KEGG: apt:APA01_23580 peroxiredoxin; hypothetical protein 2420821 12866748 Deval_2151 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702933.1 2420585 D 573059 CDS YP_005702934.1 387153998 12866749 2420802..2422274 1 NC_017310.1 KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase; PFAM: UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase 2422274 12866749 Deval_2152 Desulfovibrio vulgaris RCH1 UTP--glucose-1-phosphate uridylyltransferase YP_005702934.1 2420802 D 573059 CDS YP_005702935.1 387153999 12866750 2422524..2422946 1 NC_017310.1 KEGG: dds:Ddes_0981 hypothetical protein; hypothetical protein 2422946 12866750 Deval_2153 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702935.1 2422524 D 573059 CDS YP_005702936.1 387154000 12866751 complement(2423159..2425876) 1 NC_017310.1 KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; copper ion binding protein; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating P-type ATPase 2425876 12866751 Deval_2154 Desulfovibrio vulgaris RCH1 heavy metal translocating P-type ATPase YP_005702936.1 2423159 R 573059 CDS YP_005702937.1 387154001 12866752 2426056..2426346 1 NC_017310.1 KEGG: dde:Dde_1312 mercuric transport protein periplasmic component; manually curated; PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2426346 12866752 Deval_2155 Desulfovibrio vulgaris RCH1 heavy metal transport/detoxification protein YP_005702937.1 2426056 D 573059 CDS YP_005702938.1 387154002 12866753 complement(2426443..2427345) 1 NC_017310.1 KEGG: dde:Dde_1310 hypothetical protein; hypothetical protein 2427345 12866753 Deval_2156 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702938.1 2426443 R 573059 CDS YP_005702939.1 387154003 12866754 2427627..2428157 1 NC_017310.1 KEGG: single-stranded nucleic acid binding R3H domain protein; hypothetical protein 2428157 12866754 Deval_2157 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702939.1 2427627 D 573059 CDS YP_005702940.1 387154004 12866755 2428206..2428688 1 NC_017310.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA, putative; hydrogenase nickel incorporation protein HypA 2428688 12866755 Deval_2158 Desulfovibrio vulgaris RCH1 hydrogenase nickel incorporation protein HypA YP_005702940.1 2428206 D 573059 CDS YP_005702941.1 387154005 12866756 2428699..2429373 1 NC_017310.1 KEGG: dde:Dde_1307 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; hydrogenase nickel incorporation protein HypB 2429373 12866756 Deval_2159 Desulfovibrio vulgaris RCH1 hydrogenase nickel incorporation protein HypB YP_005702941.1 2428699 D 573059 CDS YP_005702942.1 387154006 12866757 2429370..2430251 1 NC_017310.1 PFAM: ATPase-like, ParA/MinD; KEGG: dde:Dde_1306 hypothetical protein; ParA/MinD-like ATPase 2430251 12866757 Deval_2160 Desulfovibrio vulgaris RCH1 ParA/MinD-like ATPase YP_005702942.1 2429370 D 573059 CDS YP_005702943.1 387154007 12866758 2430554..2431783 1 NC_017310.1 KEGG: dde:Dde_1441 Smr protein/MutS2-like; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; Smr protein/MutS2 2431783 12866758 Deval_2161 Desulfovibrio vulgaris RCH1 Smr protein/MutS2 YP_005702943.1 2430554 D 573059 CDS YP_005702944.1 387154008 12866759 complement(2432114..2432911) 1 NC_017310.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase 2432911 12866759 Deval_2162 Desulfovibrio vulgaris RCH1 pyrroline-5-carboxylate reductase YP_005702944.1 2432114 R 573059 CDS YP_005702945.1 387154009 12866760 complement(2432911..2433330) 1 NC_017310.1 PFAM: nucleoside diphosphate kinase; KEGG: dba:Dbac_2890 nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 2433330 12866760 Deval_2163 Desulfovibrio vulgaris RCH1 nucleoside-diphosphate kinase YP_005702945.1 2432911 R 573059 CDS YP_005702946.1 387154010 12866761 complement(2433882..2435432) 1 NC_017310.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: dde:Dde_1438 hypothetical protein; hypothetical protein 2435432 12866761 Deval_2164 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702946.1 2433882 R 573059 CDS YP_005702947.1 387154011 12866762 complement(2435513..2436799) 1 NC_017310.1 TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: dds:Ddes_0896 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 2436799 12866762 Deval_2165 Desulfovibrio vulgaris RCH1 carboxyl-terminal protease YP_005702947.1 2435513 R 573059 CDS YP_005702948.1 387154012 12866763 complement(2436832..2438019) 1 NC_017310.1 PFAM: Peptidase M23; KEGG: dde:Dde_1436 M24/M37 family peptidase; peptidase M23 2438019 12866763 Deval_2166 Desulfovibrio vulgaris RCH1 peptidase M23 YP_005702948.1 2436832 R 573059 CDS YP_005702949.1 387154013 12866764 complement(2438013..2438693) 1 NC_017310.1 KEGG: dba:Dbac_2870 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; Helix-hairpin-helix DNA-binding class 1; HhH-GPD family protein 2438693 12866764 Deval_2167 Desulfovibrio vulgaris RCH1 HhH-GPD family protein YP_005702949.1 2438013 R 573059 CDS YP_005702950.1 387154014 12866765 complement(2438943..2439794) 1 NC_017310.1 PFAM: ribosomal L11 methyltransferase; KEGG: dde:Dde_1432 50S ribosomal protein L11P methyltransferase; ribosomal L11 methyltransferase 2439794 12866765 Deval_2168 Desulfovibrio vulgaris RCH1 ribosomal L11 methyltransferase YP_005702950.1 2438943 R 573059 CDS YP_005702951.1 387154015 12866766 complement(2439798..2440490) 1 NC_017310.1 KEGG: drt:Dret_2155 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 2440490 12866766 Deval_2169 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005702951.1 2439798 R 573059 CDS YP_005702952.1 387154016 12866767 complement(2440501..2441202) 1 NC_017310.1 KEGG: dde:Dde_1430 amino acid ABC transporter permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 2441202 12866767 Deval_2170 Desulfovibrio vulgaris RCH1 polar amino acid ABC transporter inner membrane subunit YP_005702952.1 2440501 R 573059 CDS YP_005702953.1 387154017 12866768 complement(2441264..2442076) 1 NC_017310.1 KEGG: dde:Dde_1429 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2442076 12866768 Deval_2171 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005702953.1 2441264 R 573059 CDS YP_005702954.1 387154018 12866769 complement(2442134..2442862) 1 NC_017310.1 KEGG: dde:Dde_1428 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2442862 12866769 Deval_2172 Desulfovibrio vulgaris RCH1 ABC transporter YP_005702954.1 2442134 R 573059 CDS YP_005702955.1 387154019 12866770 complement(2443272..2443592) 1 NC_017310.1 KEGG: dde:Dde_1427 hypothetical protein; hypothetical protein 2443592 12866770 Deval_2173 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702955.1 2443272 R 573059 CDS YP_005702956.1 387154020 12866771 complement(2444052..2445251) 1 NC_017310.1 KEGG: dde:Dde_1426 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; acetylornithine and succinylornithine aminotransferase 2445251 12866771 Deval_2174 Desulfovibrio vulgaris RCH1 acetylornithine and succinylornithine aminotransferase YP_005702956.1 2444052 R 573059 CDS YP_005702957.1 387154021 12866772 complement(2445456..2445968) 1 NC_017310.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: dde:Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 2445968 12866772 Deval_2175 Desulfovibrio vulgaris RCH1 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_005702957.1 2445456 R 573059 CDS YP_005702958.1 387154022 12866773 2446151..2448718 1 NC_017310.1 TIGRFAM: alpha-glucan phosphorylase; KEGG: dde:Dde_1424 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 2448718 12866773 Deval_2176 Desulfovibrio vulgaris RCH1 alpha-glucan phosphorylase YP_005702958.1 2446151 D 573059 CDS YP_005702959.1 387154023 12866774 2449059..2450471 1 NC_017310.1 TIGRFAM: gid protein; KEGG: dde:Dde_1422 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A; hypothetical protein 2450471 12866774 Deval_2177 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702959.1 2449059 D 573059 CDS YP_005702960.1 387154024 12866775 2450544..2450912 1 NC_017310.1 KEGG: rpe:RPE_4080 hypothetical protein; hypothetical protein 2450912 12866775 Deval_2178 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702960.1 2450544 D 573059 CDS YP_005702961.1 387154025 12866776 complement(2451013..2452650) 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2452650 12866776 Deval_2179 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005702961.1 2451013 R 573059 CDS YP_005702962.1 387154026 12866777 2452777..2454501 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1486 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2454501 12866777 Deval_2180 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005702962.1 2452777 D 573059 CDS YP_005702963.1 387154027 12866778 2454498..2455745 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1485 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2455745 12866778 Deval_2181 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005702963.1 2454498 D 573059 CDS YP_005702964.1 387154028 12866779 complement(2456006..2456596) 1 NC_017310.1 KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)-methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA guanosine-2'-O-methyltransferase 2456596 12866779 Deval_2182 Desulfovibrio vulgaris RCH1 tRNA guanosine-2'-O-methyltransferase YP_005702964.1 2456006 R 573059 CDS YP_005702965.1 387154029 12866780 2456798..2458225 1 NC_017310.1 KEGG: dde:Dde_1483 hypothetical protein; hypothetical protein 2458225 12866780 Deval_2183 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702965.1 2456798 D 573059 CDS YP_005702966.1 387154030 12866781 complement(2458521..2459630) 1 NC_017310.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1400 putative signal transduction protein; metal dependent phosphohydrolase 2459630 12866781 Deval_2184 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005702966.1 2458521 R 573059 CDS YP_005702967.1 387154031 12866782 2460177..2461832 1 NC_017310.1 KEGG: dde:Dde_1399 ATPase; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; Fis family sigma-54 specific transcriptional regulator 2461832 12866782 Deval_2185 Desulfovibrio vulgaris RCH1 Fis family sigma-54 specific transcriptional regulator YP_005702967.1 2460177 D 573059 CDS YP_005702968.1 387154032 12866783 2461936..2462742 1 NC_017310.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1381 ferric reductase-like; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2462742 12866783 Deval_2186 Desulfovibrio vulgaris RCH1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_005702968.1 2461936 D 573059 CDS YP_005702969.1 387154033 12866784 complement(2462966..2463625) 1 NC_017310.1 KEGG: dde:Dde_1379 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 2463625 12866784 Deval_2187 Desulfovibrio vulgaris RCH1 thiamine-phosphate pyrophosphorylase YP_005702969.1 2462966 R 573059 CDS YP_005702970.1 387154034 12866785 complement(2463622..2464425) 1 NC_017310.1 KEGG: dde:Dde_1378 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 2464425 12866785 Deval_2188 Desulfovibrio vulgaris RCH1 hydroxyethylthiazole kinase YP_005702970.1 2463622 R 573059 CDS YP_005702971.1 387154035 12866786 complement(2464755..2465921) 1 NC_017310.1 PFAM: aminotransferase class I and II; KEGG: rci:RRC4 putative aminotransferase; putative GntR family transcriptional regulator 2465921 12866786 Deval_2189 Desulfovibrio vulgaris RCH1 putative GntR family transcriptional regulator YP_005702971.1 2464755 R 573059 CDS YP_005702972.1 387154036 12866787 complement(2465956..2466792) 1 NC_017310.1 PFAM: protein of unknown function DUF1009; KEGG: dde:Dde_1375 hypothetical protein; hypothetical protein 2466792 12866787 Deval_2190 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702972.1 2465956 R 573059 CDS YP_005702973.1 387154037 12866788 complement(2466992..2467795) 1 NC_017310.1 KEGG: dde:Dde_1374 UDP-N-acetylglucosamine acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 2467795 12866788 Deval_2191 Desulfovibrio vulgaris RCH1 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase YP_005702973.1 2466992 R 573059 CDS YP_005702974.1 387154038 12866789 complement(2467795..2468259) 1 NC_017310.1 KEGG: dde:Dde_1373 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2468259 12866789 Deval_2192 Desulfovibrio vulgaris RCH1 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_005702974.1 2467795 R 573059 CDS YP_005702975.1 387154039 12866790 complement(2468259..2469293) 1 NC_017310.1 KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 2469293 12866790 Deval_2193 Desulfovibrio vulgaris RCH1 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_005702975.1 2468259 R 573059 CDS YP_005702976.1 387154040 12866791 complement(2469304..2469831) 1 NC_017310.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1371 outer membrane protein OmpH, putative; outer membrane chaperone Skp 2469831 12866791 Deval_2194 Desulfovibrio vulgaris RCH1 outer membrane chaperone Skp YP_005702976.1 2469304 R 573059 CDS YP_005702977.1 387154041 12866792 complement(2469982..2471688) 1 NC_017310.1 KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 2471688 12866792 Deval_2195 Desulfovibrio vulgaris RCH1 cell wall hydrolase/autolysin YP_005702977.1 2469982 R 573059 CDS YP_005702978.1 387154042 12866793 complement(2472085..2474775) 1 NC_017310.1 KEGG: dde:Dde_1368 OMP85 family outer membrane protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; outer membrane protein assembly complex, YaeT protein 2474775 12866793 Deval_2196 Desulfovibrio vulgaris RCH1 outer membrane protein assembly complex, YaeT protein YP_005702978.1 2472085 R 573059 CDS YP_005702979.1 387154043 12866794 complement(2474756..2475457) 1 NC_017310.1 KEGG: dde:Dde_1367 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2475457 12866794 Deval_2197 Desulfovibrio vulgaris RCH1 ABC transporter YP_005702979.1 2474756 R 573059 CDS YP_005702980.1 387154044 12866795 complement(2475454..2476689) 1 NC_017310.1 KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; lipoprotein releasing system transmembrane protein LolC/E family 2476689 12866795 Deval_2198 Desulfovibrio vulgaris RCH1 lipoprotein releasing system transmembrane protein LolC/E family YP_005702980.1 2475454 R 573059 CDS YP_005702981.1 387154045 12866796 complement(2476697..2478280) 1 NC_017310.1 KEGG: dde:Dde_1365 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; lysyl-tRNA synthetase 2478280 12866796 Deval_2199 Desulfovibrio vulgaris RCH1 lysyl-tRNA synthetase YP_005702981.1 2476697 R 573059 CDS YP_005702982.1 387154046 12866798 2478970..2479827 1 NC_017310.1 KEGG: dac:Daci_0117 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2479827 12866798 Deval_2200 Desulfovibrio vulgaris RCH1 AraC family transcriptional regulator YP_005702982.1 2478970 D 573059 CDS YP_005702983.1 387154047 12866799 2479952..2482969 1 NC_017310.1 PFAM: peptidase M16 domain protein; KEGG: dde:Dde_0444 M16 family peptidase putative; peptidase M16 domain-containing protein 2482969 12866799 Deval_2201 Desulfovibrio vulgaris RCH1 peptidase M16 domain-containing protein YP_005702983.1 2479952 D 573059 CDS YP_005702984.1 387154048 12866800 2482966..2483871 1 NC_017310.1 KEGG: rce:RC1_3838 ABC transporter, ATP binding protein, putative; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2483871 12866800 Deval_2202 Desulfovibrio vulgaris RCH1 ABC transporter YP_005702984.1 2482966 D 573059 CDS YP_005702985.1 387154049 12866801 2483889..2484557 1 NC_017310.1 KEGG: rce:RC1_3837 hypothetical protein; hypothetical protein 2484557 12866801 Deval_2203 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702985.1 2483889 D 573059 CDS YP_005702986.1 387154050 12866802 2484554..2485918 1 NC_017310.1 KEGG: rce:RC1_3836 hypothetical protein; hypothetical protein 2485918 12866802 Deval_2204 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702986.1 2484554 D 573059 CDS YP_005702987.1 387154051 12866803 2485951..2488578 1 NC_017310.1 PFAM: TonB-dependent receptor plug; KEGG: sdl:Sdel_1224 TonB-dependent receptor; TonB-dependent receptor plug 2488578 12866803 Deval_2205 Desulfovibrio vulgaris RCH1 TonB-dependent receptor plug YP_005702987.1 2485951 D 573059 CDS YP_005702988.1 387154052 12866804 2488631..2490550 1 NC_017310.1 PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0448 ABC transporter, periplasmic substrate-binding protein; family 5 extracellular solute-binding protein 2490550 12866804 Deval_2206 Desulfovibrio vulgaris RCH1 family 5 extracellular solute-binding protein YP_005702988.1 2488631 D 573059 CDS YP_005702989.1 387154053 12866805 2490550..2491671 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0449 putative peptide transport system permease protein; binding-protein-dependent transport system inner membrane protein 2491671 12866805 Deval_2207 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005702989.1 2490550 D 573059 CDS YP_005702990.1 387154054 12866806 2491668..2492699 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_1540 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2492699 12866806 Deval_2208 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005702990.1 2491668 D 573059 CDS YP_005702991.1 387154055 12866807 2492705..2494483 1 NC_017310.1 KEGG: dde:Dde_0451 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2494483 12866807 Deval_2209 Desulfovibrio vulgaris RCH1 ABC transporter YP_005702991.1 2492705 D 573059 CDS YP_005702992.1 387154056 12866808 2494487..2495440 1 NC_017310.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein; MotA/TolQ/ExbB proton channel 2495440 12866808 Deval_2210 Desulfovibrio vulgaris RCH1 MotA/TolQ/ExbB proton channel YP_005702992.1 2494487 D 573059 CDS YP_005702993.1 387154057 12866809 2495424..2495837 1 NC_017310.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_3630 biopolymer ExbD/TolR family transporter; biopolymer transport protein ExbD/TolR 2495837 12866809 Deval_2211 Desulfovibrio vulgaris RCH1 biopolymer transport protein ExbD/TolR YP_005702993.1 2495424 D 573059 CDS YP_005702994.1 387154058 12866810 2495834..2496742 1 NC_017310.1 KEGG: dba:Dbac_3059 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain; TonB family protein 2496742 12866810 Deval_2212 Desulfovibrio vulgaris RCH1 TonB family protein YP_005702994.1 2495834 D 573059 CDS YP_005702995.1 387154059 12866812 2497579..2498031 1 NC_017310.1 PFAM: Tir chaperone family protein; KEGG: hypothetical protein; Tir chaperone family protein 2498031 12866812 Deval_2213 Desulfovibrio vulgaris RCH1 Tir chaperone family protein YP_005702995.1 2497579 D 573059 CDS YP_005702996.1 387154060 12866813 2498144..2500240 1 NC_017310.1 KEGG: xce:Xcel_1159 chromosome segregation protein SMC; hypothetical protein 2500240 12866813 Deval_2214 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005702996.1 2498144 D 573059 CDS YP_005702997.1 387154061 12866814 complement(2500487..2501878) 1 NC_017310.1 KEGG: dma:DMR_02000 NtrC family two-component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 2501878 12866814 Deval_2215 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005702997.1 2500487 R 573059 CDS YP_005702998.1 387154062 12866815 complement(2501884..2503140) 1 NC_017310.1 KEGG: dde:Dde_3535 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 2503140 12866815 Deval_2216 Desulfovibrio vulgaris RCH1 PAS/PAC sensor signal transduction histidine kinase YP_005702998.1 2501884 R 573059 CDS YP_005702999.1 387154063 12866816 complement(2503142..2504284) 1 NC_017310.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dma:DMR_02380 dehydrogenase; iron-containing alcohol dehydrogenase 2504284 12866816 Deval_2217 Desulfovibrio vulgaris RCH1 iron-containing alcohol dehydrogenase YP_005702999.1 2503142 R 573059 CDS YP_005703000.1 387154064 12866817 complement(2504773..2505654) 1 NC_017310.1 KEGG: dma:DMR_01980 hypothetical protein; hypothetical protein 2505654 12866817 Deval_2218 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703000.1 2504773 R 573059 CDS YP_005703001.1 387154065 12866818 complement(2505723..2506214) 1 NC_017310.1 KEGG: dma:DMR_01970 hypothetical protein; hypothetical protein 2506214 12866818 Deval_2219 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703001.1 2505723 R 573059 CDS YP_005703002.1 387154066 12866819 complement(2506472..2507359) 1 NC_017310.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; KEGG: dma:DMR_01960 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2507359 12866819 Deval_2220 Desulfovibrio vulgaris RCH1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_005703002.1 2506472 R 573059 CDS YP_005703003.1 387154067 12866820 complement(2507352..2508434) 1 NC_017310.1 KEGG: drt:Dret_2312 iron-sulfur binding protein; iron-sulfur binding protein 2508434 12866820 Deval_2221 Desulfovibrio vulgaris RCH1 iron-sulfur binding protein YP_005703003.1 2507352 R 573059 CDS YP_005703004.1 387154068 12866821 complement(2508431..2509915) 1 NC_017310.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dds:Ddes_2101 methyl-viologen-reducing hydrogenase delta subunit; methyl-viologen-reducing hydrogenase delta subunit 2509915 12866821 Deval_2222 Desulfovibrio vulgaris RCH1 methyl-viologen-reducing hydrogenase delta subunit YP_005703004.1 2508431 R 573059 CDS YP_005703005.1 387154069 12866822 complement(2509903..2511861) 1 NC_017310.1 PFAM: FAD dependent oxidoreductase; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A; FAD dependent oxidoreductase 2511861 12866822 Deval_2223 Desulfovibrio vulgaris RCH1 FAD dependent oxidoreductase YP_005703005.1 2509903 R 573059 CDS YP_005703006.1 387154070 12866823 complement(2511858..2512862) 1 NC_017310.1 KEGG: dba:Dbac_0849 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; CoB--CoM heterodisulfide reductase 2512862 12866823 Deval_2224 Desulfovibrio vulgaris RCH1 CoB--CoM heterodisulfide reductase YP_005703006.1 2511858 R 573059 CDS YP_005703007.1 387154071 12866824 complement(2512859..2513419) 1 NC_017310.1 KEGG: dma:DMR_01900 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C 2513419 12866824 Deval_2225 Desulfovibrio vulgaris RCH1 heterodisulfide reductase subunit C YP_005703007.1 2512859 R 573059 CDS YP_005703008.1 387154072 12866825 complement(2513647..2514828) 1 NC_017310.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dba:Dbac_3326 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2514828 12866825 Deval_2226 Desulfovibrio vulgaris RCH1 iron-containing alcohol dehydrogenase YP_005703008.1 2513647 R 573059 CDS YP_005703009.1 387154073 12866826 complement(2515413..2515913) 1 NC_017310.1 KEGG: dma:DMR_43050 hypothetical membrane protein; hypothetical protein 2515913 12866826 Deval_2227 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703009.1 2515413 R 573059 CDS YP_005703010.1 387154074 12866827 complement(2516268..2517059) 1 NC_017310.1 KEGG: hch:HCH_04173 amino acid ABC transporter periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2517059 12866827 Deval_2228 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005703010.1 2516268 R 573059 CDS YP_005703011.1 387154075 12866828 2517336..2518052 1 NC_017310.1 KEGG: syn:slr1516 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; Superoxide dismutase 2518052 12866828 Deval_2229 Desulfovibrio vulgaris RCH1 Superoxide dismutase YP_005703011.1 2517336 D 573059 CDS YP_005703012.1 387154076 12866829 2518236..2518652 1 NC_017310.1 PFAM: EF-Hand, Calmodulin; KEGG: dde:Dde_1362 EF hand domain-containing protein; calmodulin 2518652 12866829 Deval_2230 Desulfovibrio vulgaris RCH1 calmodulin YP_005703012.1 2518236 D 573059 CDS YP_005703013.1 387154077 12866830 complement(2518994..2521921) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; GAF domain protein; KEGG: dde:Dde_1360 GAF sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 2521921 12866830 Deval_2231 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005703013.1 2518994 R 573059 CDS YP_005703014.1 387154078 12866831 2522115..2524157 1 NC_017310.1 manually curated; PFAM: Radical SAM domain protein; Radical SAM domain protein; KEGG: dde:Dde_1359 elongator protein 3/MiaB/NifB; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2524157 12866831 Deval_2232 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703014.1 2522115 D 573059 CDS YP_005703015.1 387154079 12866832 complement(2524352..2526112) 1 NC_017310.1 KEGG: gau:GAU_0330 flagellar motor switch protein FliG; hypothetical protein 2526112 12866832 Deval_2233 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703015.1 2524352 R 573059 CDS YP_005703016.1 387154080 12866833 2526465..2527892 1 NC_017310.1 KEGG: dde:Dde_1358 hypothetical protein; hypothetical protein 2527892 12866833 Deval_2234 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703016.1 2526465 D 573059 CDS YP_005703017.1 387154081 12866834 2528222..2528704 1 NC_017310.1 PFAM: protein of unknown function DUF55; KEGG: lip:LI0511 hypothetical protein; hypothetical protein 2528704 12866834 Deval_2235 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703017.1 2528222 D 573059 CDS YP_005703018.1 387154082 12866835 2528701..2528922 1 NC_017310.1 PFAM: SlyX family protein; KEGG: dde:Dde_1356 SlyX protein; SlyX family protein 2528922 12866835 Deval_2236 Desulfovibrio vulgaris RCH1 SlyX family protein YP_005703018.1 2528701 D 573059 CDS YP_005703019.1 387154083 12866836 complement(2529358..2529777) 1 NC_017310.1 PFAM: VanZ family protein; KEGG: dma:DMR_06500 hypothetical membrane protein; VanZ family protein 2529777 12866836 Deval_2237 Desulfovibrio vulgaris RCH1 VanZ family protein YP_005703019.1 2529358 R 573059 CDS YP_005703020.1 387154084 12866837 complement(2530138..2530821) 1 NC_017310.1 KEGG: pol:Bpro_2041 rhodanese-like protein; manually curated; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 2530821 12866837 Deval_2238 Desulfovibrio vulgaris RCH1 Rhodanese domain-containing protein YP_005703020.1 2530138 R 573059 CDS YP_005703021.1 387154085 12866838 complement(2530982..2531311) 1 NC_017310.1 KEGG: dde:Dde_1354 hypothetical protein; hypothetical protein 2531311 12866838 Deval_2239 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703021.1 2530982 R 573059 CDS YP_005703022.1 387154086 12866839 complement(2531445..2531642) 1 NC_017310.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: afu:AF0669 4-oxalocrotonate tautomerase, putative; 4-oxalocrotonate tautomerase 2531642 12866839 Deval_2240 Desulfovibrio vulgaris RCH1 4-oxalocrotonate tautomerase YP_005703022.1 2531445 R 573059 CDS YP_005703023.1 387154087 12866840 complement(2531645..2532154) 1 NC_017310.1 PFAM: nitroreductase; KEGG: dsa:Desal_3763 nitroreductase; nitroreductase 2532154 12866840 Deval_2241 Desulfovibrio vulgaris RCH1 nitroreductase YP_005703023.1 2531645 R 573059 CDS YP_005703024.1 387154088 12866841 2532256..2532735 1 NC_017310.1 PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator; HxlR family transcriptional regulator 2532735 12866841 Deval_2242 Desulfovibrio vulgaris RCH1 HxlR family transcriptional regulator YP_005703024.1 2532256 D 573059 CDS YP_005703025.1 387154089 12866842 complement(2533161..2534075) 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: azl:AZL_024540 hypothetical protein; hypothetical protein 2534075 12866842 Deval_2243 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703025.1 2533161 R 573059 CDS YP_005703026.1 387154090 12866843 complement(2534168..2535070) 1 NC_017310.1 KEGG: dde:Dde_1350 RarD protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; RarD protein, DMT superfamily transporter 2535070 12866843 Deval_2244 Desulfovibrio vulgaris RCH1 RarD protein, DMT superfamily transporter YP_005703026.1 2534168 R 573059 CDS YP_005703027.1 387154091 12866844 complement(2535311..2535865) 1 NC_017310.1 KEGG: dde:Dde_1349 hypothetical protein; hypothetical protein 2535865 12866844 Deval_2245 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703027.1 2535311 R 573059 CDS YP_005703028.1 387154092 12866845 complement(2535988..2536446) 1 NC_017310.1 KEGG: dde:Dde_1150 outer membrane lipoprotein-like; outer membrane lipoprotein-like protein 2536446 12866845 Deval_2246 Desulfovibrio vulgaris RCH1 outer membrane lipoprotein-like protein YP_005703028.1 2535988 R 573059 CDS YP_005703029.1 387154093 12866846 complement(2536780..2537046) 1 NC_017310.1 KEGG: dds:Ddes_2020 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 2537046 12866846 Deval_2247 Desulfovibrio vulgaris RCH1 RNP-1 like RNA-binding protein YP_005703029.1 2536780 R 573059 CDS YP_005703030.1 387154094 12866847 2537308..2541549 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dps:DP3110 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2541549 12866847 Deval_2248 Desulfovibrio vulgaris RCH1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_005703030.1 2537308 D 573059 CDS YP_005703031.1 387154095 12866848 complement(2541888..2542397) 1 NC_017310.1 KEGG: dde:Dde_1345 hypothetical protein; hypothetical protein 2542397 12866848 Deval_2249 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703031.1 2541888 R 573059 CDS YP_005703032.1 387154096 12866849 2542575..2543609 1 NC_017310.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: lip:LI0097 CorA, CorA-like Mg2+ transporter protein; Mg2 transporter protein CorA family protein 2543609 12866849 Deval_2250 Desulfovibrio vulgaris RCH1 Mg2 transporter protein CorA family protein YP_005703032.1 2542575 D 573059 CDS YP_005703033.1 387154097 12866850 2543915..2544547 1 NC_017310.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1504 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2544547 12866850 Deval_2251 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005703033.1 2543915 D 573059 CDS YP_005703034.1 387154098 12866851 complement(2544625..2545845) 1 NC_017310.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter, permease protein; hypothetical protein 2545845 12866851 Deval_2252 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703034.1 2544625 R 573059 CDS YP_005703035.1 387154099 12866852 complement(2545846..2547312) 1 NC_017310.1 PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transport system, permease component; hypothetical protein 2547312 12866852 Deval_2253 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703035.1 2545846 R 573059 CDS YP_005703036.1 387154100 12866853 complement(2547309..2548208) 1 NC_017310.1 KEGG: dde:Dde_1339 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2548208 12866853 Deval_2254 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703036.1 2547309 R 573059 CDS YP_005703037.1 387154101 12866854 complement(2548205..2549440) 1 NC_017310.1 KEGG: dde:Dde_1340 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2549440 12866854 Deval_2255 Desulfovibrio vulgaris RCH1 RND family efflux transporter MFP subunit YP_005703037.1 2548205 R 573059 CDS YP_005703038.1 387154102 12866855 complement(2549912..2550820) 1 NC_017310.1 KEGG: dde:Dde_1342 hypothetical protein; hypothetical protein 2550820 12866855 Deval_2256 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703038.1 2549912 R 573059 CDS YP_005703039.1 387154103 12866856 2551025..2551435 1 NC_017310.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1343 HSP20 family protein; heat shock protein Hsp20 2551435 12866856 Deval_2257 Desulfovibrio vulgaris RCH1 heat shock protein Hsp20 YP_005703039.1 2551025 D 573059 CDS YP_005703040.1 387154104 12866857 2551496..2551849 1 NC_017310.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1344 HSP20 family protein; heat shock protein Hsp20 2551849 12866857 Deval_2258 Desulfovibrio vulgaris RCH1 heat shock protein Hsp20 YP_005703040.1 2551496 D 573059 CDS YP_005703041.1 387154105 12866858 complement(2552075..2552701) 1 NC_017310.1 PFAM: Uncharacterised conserved protein UCP020606; KEGG: dde:Dde_1503 hypothetical protein; hypothetical protein 2552701 12866858 Deval_2259 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703041.1 2552075 R 573059 CDS YP_005703042.1 387154106 12866859 complement(2552882..2553775) 1 NC_017310.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin; flagellin domain-containing protein 2553775 12866859 Deval_2260 Desulfovibrio vulgaris RCH1 flagellin domain-containing protein YP_005703042.1 2552882 R 573059 CDS YP_005703043.1 387154107 12866860 2554034..2554957 1 NC_017310.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: dde:Dde_1500 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2554957 12866860 Deval_2261 Desulfovibrio vulgaris RCH1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_005703043.1 2554034 D 573059 CDS YP_005703044.1 387154108 12866861 complement(2555076..2555651) 1 NC_017310.1 KEGG: dds:Ddes_2285 hypothetical protein; hypothetical protein 2555651 12866861 Deval_2262 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703044.1 2555076 R 573059 CDS YP_005703045.1 387154109 12866862 2555824..2556675 1 NC_017310.1 KEGG: dde:Dde_1498 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 2556675 12866862 Deval_2263 Desulfovibrio vulgaris RCH1 pantoate--beta-alanine ligase YP_005703045.1 2555824 D 573059 CDS YP_005703046.1 387154110 12866863 2556727..2557902 1 NC_017310.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: dde:Dde_1496 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 2557902 12866863 Deval_2264 Desulfovibrio vulgaris RCH1 S-adenosylmethionine synthetase YP_005703046.1 2556727 D 573059 CDS YP_005703047.1 387154111 12866864 2558073..2558279 1 NC_017310.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dba:Dbac_2259 twin-arginine translocation protein, TatA/E family subunit; sec-independent translocation protein mttA/Hcf106 2558279 12866864 Deval_2265 Desulfovibrio vulgaris RCH1 sec-independent translocation protein mttA/Hcf106 YP_005703047.1 2558073 D 573059 CDS YP_005703048.1 387154112 12866865 complement(2558576..2560288) 1 NC_017310.1 KEGG: dba:Dbac_1045 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 2560288 12866865 Deval_2266 Desulfovibrio vulgaris RCH1 L-lactate transport YP_005703048.1 2558576 R 573059 CDS YP_005703049.1 387154113 12866866 complement(2560897..2561196) 1 NC_017310.1 KEGG: swd:Swoo_3198 enoyl-CoA hydratase/isomerase; hypothetical protein 2561196 12866866 Deval_2267 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703049.1 2560897 R 573059 CDS YP_005703050.1 387154114 12866867 2561418..2562368 1 NC_017310.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dds:Ddes_0779 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2562368 12866867 Deval_2268 Desulfovibrio vulgaris RCH1 NAD-dependent epimerase/dehydratase YP_005703050.1 2561418 D 573059 CDS YP_005703051.1 387154115 12866874 2568389..2569003 1 NC_017310.1 KEGG: dde:Dde_2591 hypothetical protein; hypothetical protein 2569003 12866874 Deval_2269 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703051.1 2568389 D 573059 CDS YP_005703052.1 387154116 12866875 2569168..2569698 1 NC_017310.1 KEGG: dde:Dde_2592 hypothetical protein; hypothetical protein 2569698 12866875 Deval_2270 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703052.1 2569168 D 573059 CDS YP_005703053.1 387154117 12866876 2569710..2570729 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2570729 12866876 Deval_2271 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005703053.1 2569710 D 573059 CDS YP_005703054.1 387154118 12866877 2570726..2571628 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2571628 12866877 Deval_2272 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005703054.1 2570726 D 573059 CDS YP_005703055.1 387154119 12866878 2572070..2573689 1 NC_017310.1 PFAM: SMC domain protein; KEGG: dde:Dde_2596 DNA repair protein RecN; SMC domain-containing protein 2573689 12866878 Deval_2273 Desulfovibrio vulgaris RCH1 SMC domain-containing protein YP_005703055.1 2572070 D 573059 CDS YP_005703056.1 387154120 12866879 2573692..2575275 1 NC_017310.1 KEGG: dde:Dde_2597 hypothetical protein; hypothetical protein 2575275 12866879 Deval_2274 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703056.1 2573692 D 573059 CDS YP_005703057.1 387154121 12866880 2575599..2576468 1 NC_017310.1 KEGG: pesticin domain protein; hypothetical protein 2576468 12866880 Deval_2275 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703057.1 2575599 D 573059 CDS YP_005703058.1 387154122 12866881 complement(2576829..2579489) 1 NC_017310.1 TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; KEGG: dde:Dde_2598 ribonuclease R; SMART: Cold shock protein; ribonuclease R 2579489 12866881 Deval_2276 Desulfovibrio vulgaris RCH1 ribonuclease R YP_005703058.1 2576829 R 573059 CDS YP_005703059.1 387154123 12866882 complement(2579519..2580583) 1 NC_017310.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: dde:Dde_2600 lipid-A-disaccharide synthase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2580583 12866882 Deval_2277 Desulfovibrio vulgaris RCH1 tetraacyldisaccharide 4'-kinase YP_005703059.1 2579519 R 573059 CDS YP_005703060.1 387154124 12866883 complement(2580750..2581451) 1 NC_017310.1 PFAM: protein of unknown function UPF0005; KEGG: dma:DMR_44900 hypothetical membrane protein; hypothetical protein 2581451 12866883 Deval_2278 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703060.1 2580750 R 573059 CDS YP_005703061.1 387154125 12866884 2581946..2583244 1 NC_017310.1 manually curated; KEGG: dal:Dalk_2776 protein of unknown function DUF224 cysteine-rich region domain protein; manually curated; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; Contains selenocysteine; hypothetical protein 2583244 12866884 Deval_2279 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703061.1 2581946 D 573059 CDS YP_005703062.1 387154126 12866885 2583550..2585889 1 NC_017310.1 PFAM: glycoside hydrolase family 57; KEGG: dde:Dde_2603 hypothetical protein; glycoside hydrolase family protein 2585889 12866885 Deval_2280 Desulfovibrio vulgaris RCH1 glycoside hydrolase family protein YP_005703062.1 2583550 D 573059 CDS YP_005703063.1 387154127 12866886 complement(2586186..2586668) 1 NC_017310.1 KEGG: dde:Dde_1063 hypothetical protein; hypothetical protein 2586668 12866886 Deval_2281 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703063.1 2586186 R 573059 CDS YP_005703064.1 387154128 12866887 2586929..2587771 1 NC_017310.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_3636 ferredoxin-NADP(+) reductase subunit alpha; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2587771 12866887 Deval_2282 Desulfovibrio vulgaris RCH1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_005703064.1 2586929 D 573059 CDS YP_005703065.1 387154129 12866888 2587764..2589194 1 NC_017310.1 KEGG: dde:Dde_3635 putative oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase (NADPH), homotetrameric 2589194 12866888 Deval_2283 Desulfovibrio vulgaris RCH1 glutamate synthase (NADPH), homotetrameric YP_005703065.1 2587764 D 573059 CDS YP_005703066.1 387154130 12866889 2589436..2590248 1 NC_017310.1 KEGG: dde:Dde_1062 phosphate binding protein; TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; phosphate binding protein 2590248 12866889 Deval_2284 Desulfovibrio vulgaris RCH1 phosphate binding protein YP_005703066.1 2589436 D 573059 CDS YP_005703067.1 387154131 12866890 2590328..2591221 1 NC_017310.1 KEGG: dde:Dde_1061 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2591221 12866890 Deval_2285 Desulfovibrio vulgaris RCH1 phosphate ABC transporter permease YP_005703067.1 2590328 D 573059 CDS YP_005703068.1 387154132 12866891 2591308..2592237 1 NC_017310.1 KEGG: dde:Dde_1060 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2592237 12866891 Deval_2286 Desulfovibrio vulgaris RCH1 phosphate ABC transporter permease YP_005703068.1 2591308 D 573059 CDS YP_005703069.1 387154133 12866892 complement(2592692..2593405) 1 NC_017310.1 KEGG: dat:HRM2_47150 FdhB8; Formate dehydrogenase subunit beta 2593405 12866892 Deval_2287 Desulfovibrio vulgaris RCH1 Formate dehydrogenase subunit beta YP_005703069.1 2592692 R 573059 CDS YP_005703070.1 387154134 12866893 complement(2593585..2596596) 1 NC_017310.1 manually curated; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; manually curated; Contains selenocysteine; KEGG: dba:Dbac_0971 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 2596596 12866893 Deval_2288 Desulfovibrio vulgaris RCH1 formate dehydrogenase subunit alpha YP_005703070.1 2593585 R 573059 CDS YP_005703071.1 387154135 12866894 complement(2596613..2598358) 1 NC_017310.1 PFAM: Cytochrome c, class III, conserved region; KEGG: drt:Dret_0454 cytochrome c family protein; cytochrome c, class III, conserved region 2598358 12866894 Deval_2289 Desulfovibrio vulgaris RCH1 cytochrome c, class III, conserved region YP_005703071.1 2596613 R 573059 CDS YP_005703072.1 387154136 12866895 complement(2598385..2599677) 1 NC_017310.1 KEGG: drt:Dret_0454 cytochrome c family protein; cytochrome c family protein 2599677 12866895 Deval_2290 Desulfovibrio vulgaris RCH1 cytochrome c family protein YP_005703072.1 2598385 R 573059 CDS YP_005703073.1 387154137 12866896 complement(2599681..2600745) 1 NC_017310.1 KEGG: drt:Dret_0453 hypothetical protein; hypothetical protein 2600745 12866896 Deval_2291 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703073.1 2599681 R 573059 CDS YP_005703074.1 387154138 12866897 complement(2601140..2601685) 1 NC_017310.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_2652 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2601685 12866897 Deval_2292 Desulfovibrio vulgaris RCH1 N-acetyltransferase GCN5 YP_005703074.1 2601140 R 573059 CDS YP_005703075.1 387154139 12866898 complement(2601734..2602921) 1 NC_017310.1 KEGG: dds:Ddes_2080 hypothetical protein; hypothetical protein 2602921 12866898 Deval_2293 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703075.1 2601734 R 573059 CDS YP_005703076.1 387154140 12866899 2603667..2603957 1 NC_017310.1 PFAM: Late competence development protein ComFB; KEGG: dde:Dde_1058 hypothetical protein; late competence development protein ComFB 2603957 12866899 Deval_2294 Desulfovibrio vulgaris RCH1 late competence development protein ComFB YP_005703076.1 2603667 D 573059 CDS YP_005703077.1 387154141 12866900 2604528..2605352 1 NC_017310.1 KEGG: dde:Dde_1057 histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; HisJ family histidinol phosphate phosphatase 2605352 12866900 Deval_2295 Desulfovibrio vulgaris RCH1 HisJ family histidinol phosphate phosphatase YP_005703077.1 2604528 D 573059 CDS YP_005703078.1 387154142 12866901 2605358..2607256 1 NC_017310.1 KEGG: dde:Dde_1055 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2607256 12866901 Deval_2296 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703078.1 2605358 D 573059 CDS YP_005703079.1 387154143 12866902 2607342..2608268 1 NC_017310.1 KEGG: dde:Dde_1054 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 2608268 12866902 Deval_2297 Desulfovibrio vulgaris RCH1 phosphoribosylanthranilate isomerase YP_005703079.1 2607342 D 573059 CDS YP_005703080.1 387154144 12866903 2608778..2609764 1 NC_017310.1 KEGG: dba:Dbac_0599 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2609764 12866903 Deval_2298 Desulfovibrio vulgaris RCH1 4Fe-4S ferredoxin YP_005703080.1 2608778 D 573059 CDS YP_005703081.1 387154145 12866904 2609951..2610811 1 NC_017310.1 PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_1051 HtpX-2 peptidase; peptidase M48 Ste24p 2610811 12866904 Deval_2299 Desulfovibrio vulgaris RCH1 peptidase M48 Ste24p YP_005703081.1 2609951 D 573059 CDS YP_005703082.1 387154146 12866905 2610886..2611419 1 NC_017310.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_1049 phenylacetic acid degradation-related protein; thioesterase superfamily protein 2611419 12866905 Deval_2300 Desulfovibrio vulgaris RCH1 thioesterase superfamily protein YP_005703082.1 2610886 D 573059 CDS YP_005703083.1 387154147 12866906 2611449..2611901 1 NC_017310.1 KEGG: dds:Ddes_2053 hypothetical protein; hypothetical protein 2611901 12866906 Deval_2301 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703083.1 2611449 D 573059 CDS YP_005703084.1 387154148 12866907 complement(2612137..2612871) 1 NC_017310.1 KEGG: lip:LI1049 hypothetical protein; hypothetical protein 2612871 12866907 Deval_2302 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703084.1 2612137 R 573059 CDS YP_005703085.1 387154149 12866908 complement(2612896..2613150) 1 NC_017310.1 KEGG: rpe:RPE_2486 hypothetical protein; hypothetical protein 2613150 12866908 Deval_2303 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703085.1 2612896 R 573059 CDS YP_005703086.1 387154150 12866909 complement(2613418..2614767) 1 NC_017310.1 KEGG: dde:Dde_1047 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ 2614767 12866909 Deval_2304 Desulfovibrio vulgaris RCH1 cell division protein FtsZ YP_005703086.1 2613418 R 573059 CDS YP_005703087.1 387154151 12866910 complement(2614817..2616043) 1 NC_017310.1 KEGG: dde:Dde_1046 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; cell division protein FtsA 2616043 12866910 Deval_2305 Desulfovibrio vulgaris RCH1 cell division protein FtsA YP_005703087.1 2614817 R 573059 CDS YP_005703088.1 387154152 12866911 complement(2616074..2616910) 1 NC_017310.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dds:Ddes_1116 polypeptide-transport-associated domain protein FtsQ-type; polypeptide-transport-associated domain-containing protein FtsQ-type 2616910 12866911 Deval_2306 Desulfovibrio vulgaris RCH1 polypeptide-transport-associated domain-containing protein FtsQ-type YP_005703088.1 2616074 R 573059 CDS YP_005703089.1 387154153 12866912 complement(2616901..2617791) 1 NC_017310.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dde:Dde_1044 UDP-N-acetylmuramate dehydrogenase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 2617791 12866912 Deval_2307 Desulfovibrio vulgaris RCH1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_005703089.1 2616901 R 573059 CDS YP_005703090.1 387154154 12866913 complement(2617793..2619157) 1 NC_017310.1 KEGG: dde:Dde_1043 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; UDP-N-acetylmuramate--L-alanine ligase 2619157 12866913 Deval_2308 Desulfovibrio vulgaris RCH1 UDP-N-acetylmuramate--L-alanine ligase YP_005703090.1 2617793 R 573059 CDS YP_005703091.1 387154155 12866914 complement(2619168..2620265) 1 NC_017310.1 KEGG: dde:Dde_1042 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 2620265 12866914 Deval_2309 Desulfovibrio vulgaris RCH1 UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_005703091.1 2619168 R 573059 CDS YP_005703092.1 387154156 12866915 complement(2620269..2621411) 1 NC_017310.1 KEGG: dds:Ddes_1112 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; cell division protein FtsW 2621411 12866915 Deval_2310 Desulfovibrio vulgaris RCH1 cell division protein FtsW YP_005703092.1 2620269 R 573059 CDS YP_005703093.1 387154157 12866916 complement(2621408..2622709) 1 NC_017310.1 KEGG: dds:Ddes_1111 UDP-N-acetylmuramoylalanine/D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanine--D-glutamate ligase 2622709 12866916 Deval_2311 Desulfovibrio vulgaris RCH1 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_005703093.1 2621408 R 573059 CDS YP_005703094.1 387154158 12866917 complement(2622725..2623801) 1 NC_017310.1 KEGG: dde:Dde_1039 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase 2623801 12866917 Deval_2312 Desulfovibrio vulgaris RCH1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_005703094.1 2622725 R 573059 CDS YP_005703095.1 387154159 12866918 complement(2623791..2625227) 1 NC_017310.1 KEGG: dde:Dde_1038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 2625227 12866918 Deval_2313 Desulfovibrio vulgaris RCH1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_005703095.1 2623791 R 573059 CDS YP_005703096.1 387154160 12866919 complement(2625218..2626678) 1 NC_017310.1 KEGG: dde:Dde_1037 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramyl tripeptide synthetase 2626678 12866919 Deval_2314 Desulfovibrio vulgaris RCH1 UDP-N-acetylmuramyl tripeptide synthetase YP_005703096.1 2625218 R 573059 CDS YP_005703097.1 387154161 12866920 complement(2626675..2628747) 1 NC_017310.1 KEGG: dds:Ddes_1107 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; peptidoglycan glycosyltransferase 2628747 12866920 Deval_2315 Desulfovibrio vulgaris RCH1 peptidoglycan glycosyltransferase YP_005703097.1 2626675 R 573059 CDS YP_005703098.1 387154162 12866921 complement(2628762..2629049) 1 NC_017310.1 KEGG: dde:Dde_1035 hypothetical protein; hypothetical protein 2629049 12866921 Deval_2316 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703098.1 2628762 R 573059 CDS YP_005703099.1 387154163 12866922 complement(2629052..2630023) 1 NC_017310.1 KEGG: dds:Ddes_1105 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 2630023 12866922 Deval_2317 Desulfovibrio vulgaris RCH1 S-adenosyl-methyltransferase MraW YP_005703099.1 2629052 R 573059 CDS YP_005703100.1 387154164 12866923 complement(2630037..2630486) 1 NC_017310.1 KEGG: dde:Dde_1033 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain; MraZ protein 2630486 12866923 Deval_2318 Desulfovibrio vulgaris RCH1 MraZ protein YP_005703100.1 2630037 R 573059 CDS YP_005703101.1 387154165 12866924 2630640..2632049 1 NC_017310.1 TIGRFAM: pyruvate kinase; KEGG: dde:Dde_1032 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2632049 12866924 Deval_2319 Desulfovibrio vulgaris RCH1 pyruvate kinase YP_005703101.1 2630640 D 573059 CDS YP_005703102.1 387154166 12866925 2632052..2633107 1 NC_017310.1 KEGG: dde:Dde_1031 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2633107 12866925 Deval_2320 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005703102.1 2632052 D 573059 CDS YP_005703103.1 387154167 12866926 complement(2633327..2633812) 1 NC_017310.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein; hypothetical protein 2633812 12866926 Deval_2321 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703103.1 2633327 R 573059 CDS YP_005703104.1 387154168 12866927 complement(2634174..2635415) 1 NC_017310.1 KEGG: dde:Dde_2605 hypothetical protein; hypothetical protein 2635415 12866927 Deval_2322 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703104.1 2634174 R 573059 CDS YP_005703105.1 387154169 12866928 2635613..2636047 1 NC_017310.1 KEGG: dde:Dde_2607 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; 50S ribosomal protein L13 2636047 12866928 Deval_2323 Desulfovibrio vulgaris RCH1 50S ribosomal protein L13 YP_005703105.1 2635613 D 573059 CDS YP_005703106.1 387154170 12866929 2636066..2636458 1 NC_017310.1 PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9; 30S ribosomal protein S9 2636458 12866929 Deval_2324 Desulfovibrio vulgaris RCH1 30S ribosomal protein S9 YP_005703106.1 2636066 D 573059 CDS YP_005703107.1 387154171 12866930 complement(2636455..2636655) 1 NC_017310.1 KEGG: dre:570287 si:dkeyp-122a9.3; hypothetical protein 2636655 12866930 Deval_2325 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703107.1 2636455 R 573059 CDS YP_005703108.1 387154172 12866931 2637013..2637552 1 NC_017310.1 PFAM: shikimate kinase; KEGG: dde:Dde_2609 shikimate kinase; shikimate kinase 2637552 12866931 Deval_2326 Desulfovibrio vulgaris RCH1 shikimate kinase YP_005703108.1 2637013 D 573059 CDS YP_005703109.1 387154173 12866932 2637545..2638147 1 NC_017310.1 KEGG: dde:Dde_2610 hypothetical protein; hypothetical protein 2638147 12866932 Deval_2327 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703109.1 2637545 D 573059 CDS YP_005703110.1 387154174 12866933 2638177..2638653 1 NC_017310.1 KEGG: dsa:Desal_1060 putative lipoprotein; putative lipoprotein 2638653 12866933 Deval_2328 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005703110.1 2638177 D 573059 CDS YP_005703111.1 387154175 12866934 2639173..2639586 1 NC_017310.1 PFAM: Cytochrome c, class III, conserved region; KEGG: dde:Dde_3754 cytochrome c3, putative; cytochrome c, class III, conserved region 2639586 12866934 Deval_2329 Desulfovibrio vulgaris RCH1 cytochrome c, class III, conserved region YP_005703111.1 2639173 D 573059 CDS YP_005703112.1 387154176 12868173 2639583..2640557 1 NC_017310.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dde:Dde_3755 hydrogenase (NiFe) small subunit (HydA); PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 2640557 12868173 Deval_2330 Desulfovibrio vulgaris RCH1 hydrogenase (NiFe) small subunit HydA YP_005703112.1 2639583 D 573059 CDS YP_005703113.1 387154177 12868174 2640570..2642219 1 NC_017310.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2; nickel-dependent hydrogenase large subunit 2642219 12868174 Deval_2331 Desulfovibrio vulgaris RCH1 nickel-dependent hydrogenase large subunit YP_005703113.1 2640570 D 573059 CDS YP_005703114.1 387154178 12868175 complement(2642362..2642760) 1 NC_017310.1 PFAM: ROSMUCR transcriptional regulator; KEGG: lip:LI0064 transcriptional regulator; MucR family transcriptional regulator 2642760 12868175 Deval_2332 Desulfovibrio vulgaris RCH1 MucR family transcriptional regulator YP_005703114.1 2642362 R 573059 CDS YP_005703115.1 387154179 12868176 complement(2643113..2644294) 1 NC_017310.1 KEGG: dde:Dde_2630 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; phosphoglycerate kinase 2644294 12868176 Deval_2333 Desulfovibrio vulgaris RCH1 phosphoglycerate kinase YP_005703115.1 2643113 R 573059 CDS YP_005703116.1 387154180 12868177 complement(2644431..2646425) 1 NC_017310.1 KEGG: dde:Dde_2631 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; transketolase 2646425 12868177 Deval_2334 Desulfovibrio vulgaris RCH1 transketolase YP_005703116.1 2644431 R 573059 CDS YP_005703117.1 387154181 12868178 complement(2646516..2647184) 1 NC_017310.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 2647184 12868178 Deval_2335 Desulfovibrio vulgaris RCH1 ribulose-phosphate 3-epimerase YP_005703117.1 2646516 R 573059 CDS YP_005703118.1 387154182 12868179 complement(2647232..2647615) 1 NC_017310.1 KEGG: dde:Dde_2633 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 2647615 12868179 Deval_2336 Desulfovibrio vulgaris RCH1 MerR family transcriptional regulator YP_005703118.1 2647232 R 573059 CDS YP_005703119.1 387154183 12868180 complement(2647640..2650036) 1 NC_017310.1 KEGG: dde:Dde_2634 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 2650036 12868180 Deval_2337 Desulfovibrio vulgaris RCH1 phenylalanyl-tRNA synthetase subunit beta YP_005703119.1 2647640 R 573059 CDS YP_005703120.1 387154184 12868181 complement(2650216..2651253) 1 NC_017310.1 KEGG: dde:Dde_2635 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha 2651253 12868181 Deval_2338 Desulfovibrio vulgaris RCH1 phenylalanyl-tRNA synthetase subunit alpha YP_005703120.1 2650216 R 573059 CDS YP_005703121.1 387154185 12868182 complement(2651425..2651778) 1 NC_017310.1 KEGG: dde:Dde_2636 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; 50S ribosomal protein L20 2651778 12868182 Deval_2339 Desulfovibrio vulgaris RCH1 50S ribosomal protein L20 YP_005703121.1 2651425 R 573059 CDS YP_005703122.1 387154186 12868183 complement(2651861..2652058) 1 NC_017310.1 KEGG: dde:Dde_2637 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; 50S ribosomal protein L35 2652058 12868183 Deval_2340 Desulfovibrio vulgaris RCH1 50S ribosomal protein L35 YP_005703122.1 2651861 R 573059 CDS YP_005703123.1 387154187 12868184 complement(2652228..2652758) 1 NC_017310.1 KEGG: dds:Ddes_0489 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; translation initiation factor IF-3 2652758 12868184 Deval_2341 Desulfovibrio vulgaris RCH1 translation initiation factor IF-3 YP_005703123.1 2652228 R 573059 CDS YP_005703124.1 387154188 12868185 complement(2652766..2654700) 1 NC_017310.1 KEGG: dde:Dde_2639 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein; threonyl-tRNA synthetase 2654700 12868185 Deval_2342 Desulfovibrio vulgaris RCH1 threonyl-tRNA synthetase YP_005703124.1 2652766 R 573059 CDS YP_005703125.1 387154189 12868187 complement(2655013..2656155) 1 NC_017310.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dds:Ddes_0545 2-hydroxyglutaryl-CoA dehydratase D-component; 2-hydroxyglutaryl-CoA dehydratase subunit D 2656155 12868187 Deval_2343 Desulfovibrio vulgaris RCH1 2-hydroxyglutaryl-CoA dehydratase subunit D YP_005703125.1 2655013 R 573059 CDS YP_005703126.1 387154190 12868188 complement(2656163..2656972) 1 NC_017310.1 TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: dds:Ddes_0546 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA-substrate-specific enzyme activase 2656972 12868188 Deval_2344 Desulfovibrio vulgaris RCH1 CoA-substrate-specific enzyme activase YP_005703126.1 2656163 R 573059 CDS YP_005703127.1 387154191 12868189 2657385..2659085 1 NC_017310.1 KEGG: dde:Dde_2641 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane; hybrid cluster protein 2659085 12868189 Deval_2345 Desulfovibrio vulgaris RCH1 hybrid cluster protein YP_005703127.1 2657385 D 573059 CDS YP_005703128.1 387154192 12868190 2659144..2659959 1 NC_017310.1 KEGG: dde:Dde_2642 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2659959 12868190 Deval_2346 Desulfovibrio vulgaris RCH1 iron-sulfur cluster-binding protein YP_005703128.1 2659144 D 573059 CDS YP_005703129.1 387154193 12868191 2660427..2661587 1 NC_017310.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_1164 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2661587 12868191 Deval_2347 Desulfovibrio vulgaris RCH1 iron-containing alcohol dehydrogenase YP_005703129.1 2660427 D 573059 CDS YP_005703130.1 387154194 12868192 2661571..2663193 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dsa:Desal_2536 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2663193 12868192 Deval_2348 Desulfovibrio vulgaris RCH1 PAS/PAC sensor signal transduction histidine kinase YP_005703130.1 2661571 D 573059 CDS YP_005703131.1 387154195 12868193 complement(2663499..2664185) 1 NC_017310.1 KEGG: dde:Dde_2644 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; CarD family transcriptional regulator 2664185 12868193 Deval_2349 Desulfovibrio vulgaris RCH1 CarD family transcriptional regulator YP_005703131.1 2663499 R 573059 CDS YP_005703132.1 387154196 12868194 complement(2664189..2664818) 1 NC_017310.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bam:Bamb_0105 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) 2664818 12868194 Deval_2350 Desulfovibrio vulgaris RCH1 NAD(P)H dehydrogenase (quinone) YP_005703132.1 2664189 R 573059 CDS YP_005703133.1 387154197 12868195 2665073..2665348 1 NC_017310.1 KEGG: dde:Dde_2645 hypothetical protein; hypothetical protein 2665348 12868195 Deval_2351 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703133.1 2665073 D 573059 CDS YP_005703134.1 387154198 12868196 complement(2665608..2666912) 1 NC_017310.1 KEGG: metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2666912 12868196 Deval_2352 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005703134.1 2665608 R 573059 CDS YP_005703135.1 387154199 12868197 complement(2667180..2668571) 1 NC_017310.1 KEGG: dde:Dde_2648 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 2668571 12868197 Deval_2353 Desulfovibrio vulgaris RCH1 glutamyl-tRNA synthetase YP_005703135.1 2667180 R 573059 CDS YP_005703136.1 387154200 12868198 complement(2668745..2668972) 1 NC_017310.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: drt:Dret_1408 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein 2668972 12868198 Deval_2354 Desulfovibrio vulgaris RCH1 nitrogen-fixing NifU domain-containing protein YP_005703136.1 2668745 R 573059 CDS YP_005703137.1 387154201 12868199 complement(2669093..2669977) 1 NC_017310.1 KEGG: dde:Dde_2650 hypothetical protein; hypothetical protein 2669977 12868199 Deval_2355 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703137.1 2669093 R 573059 CDS YP_005703138.1 387154202 12868200 complement(2669964..2671385) 1 NC_017310.1 KEGG: dde:Dde_2651 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 2671385 12868200 Deval_2356 Desulfovibrio vulgaris RCH1 MATE efflux family protein YP_005703138.1 2669964 R 573059 CDS YP_005703139.1 387154203 12868201 2671532..2671900 1 NC_017310.1 KEGG: dde:Dde_2652 hypothetical protein; hypothetical protein 2671900 12868201 Deval_2357 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703139.1 2671532 D 573059 CDS YP_005703140.1 387154204 12868202 complement(2672188..2673180) 1 NC_017310.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2654 biotin--acetyl-CoA-carboxylase ligase; SMART: regulatory protein ArsR; biotin--acetyl-CoA-carboxylase ligase 2673180 12868202 Deval_2358 Desulfovibrio vulgaris RCH1 biotin--acetyl-CoA-carboxylase ligase YP_005703140.1 2672188 R 573059 CDS YP_005703141.1 387154205 12868203 2673263..2674348 1 NC_017310.1 SMART: Elongator protein 3/MiaB/NifB; biotin and thiamin synthesis associated; TIGRFAM: biotin synthase; KEGG: dde:Dde_2655 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; biotin synthase 2674348 12868203 Deval_2359 Desulfovibrio vulgaris RCH1 biotin synthase YP_005703141.1 2673263 D 573059 CDS YP_005703142.1 387154206 12868204 2674345..2675973 1 NC_017310.1 KEGG: dde:Dde_2656 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2675973 12868204 Deval_2360 Desulfovibrio vulgaris RCH1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_005703142.1 2674345 D 573059 CDS YP_005703143.1 387154207 12868205 2675970..2676356 1 NC_017310.1 KEGG: sfu:Sfum_3718 hypothetical protein; hypothetical protein 2676356 12868205 Deval_2361 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703143.1 2675970 D 573059 CDS YP_005703144.1 387154208 12868206 2676353..2677381 1 NC_017310.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 2677381 12868206 Deval_2362 Desulfovibrio vulgaris RCH1 short-chain dehydrogenase/reductase SDR YP_005703144.1 2676353 D 573059 CDS YP_005703145.1 387154209 12868207 2677481..2677888 1 NC_017310.1 KEGG: dde:Dde_2659 acyl carrier protein, putative; acyl carrier protein 2677888 12868207 Deval_2363 Desulfovibrio vulgaris RCH1 acyl carrier protein YP_005703145.1 2677481 D 573059 CDS YP_005703146.1 387154210 12868208 2678166..2679614 1 NC_017310.1 PFAM: Beta-ketoacyl synthase; KEGG: dde:Dde_2660 beta-ketoacyl synthase, putative; Beta-ketoacyl synthase 2679614 12868208 Deval_2364 Desulfovibrio vulgaris RCH1 Beta-ketoacyl synthase YP_005703146.1 2678166 D 573059 CDS YP_005703147.1 387154211 12868209 2679614..2680207 1 NC_017310.1 KEGG: sfu:Sfum_3713 hypothetical protein; hypothetical protein 2680207 12868209 Deval_2365 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703147.1 2679614 D 573059 CDS YP_005703148.1 387154212 12868210 2680180..2681454 1 NC_017310.1 KEGG: dde:Dde_2662 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 2681454 12868210 Deval_2366 Desulfovibrio vulgaris RCH1 8-amino-7-oxononanoate synthase YP_005703148.1 2680180 D 573059 CDS YP_005703149.1 387154213 12868211 2681436..2682176 1 NC_017310.1 KEGG: dde:Dde_2663 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; dethiobiotin synthase 2682176 12868211 Deval_2367 Desulfovibrio vulgaris RCH1 dethiobiotin synthase YP_005703149.1 2681436 D 573059 CDS YP_005703150.1 387154214 12868212 complement(2682332..2683597) 1 NC_017310.1 KEGG: dde:Dde_2664 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 2683597 12868212 Deval_2368 Desulfovibrio vulgaris RCH1 diaminopimelate decarboxylase YP_005703150.1 2682332 R 573059 CDS YP_005703151.1 387154215 12868213 complement(2683597..2684301) 1 NC_017310.1 KEGG: dde:Dde_2665 hypothetical protein; transcriptional regulator TrmB 2684301 12868213 Deval_2369 Desulfovibrio vulgaris RCH1 transcriptional regulator TrmB YP_005703151.1 2683597 R 573059 CDS YP_005703152.1 387154216 12868214 2684901..2686139 1 NC_017310.1 KEGG: dde:Dde_2667 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2686139 12868214 Deval_2370 Desulfovibrio vulgaris RCH1 amidohydrolase YP_005703152.1 2684901 D 573059 CDS YP_005703153.1 387154217 12868215 2686209..2686634 1 NC_017310.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2686634 12868215 Deval_2371 Desulfovibrio vulgaris RCH1 FKBP-type peptidylprolyl isomerase YP_005703153.1 2686209 D 573059 CDS YP_005703154.1 387154218 12868216 complement(2686734..2688386) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; Cache domain protein; KEGG: dde:Dde_0886 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 2688386 12868216 Deval_2372 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005703154.1 2686734 R 573059 CDS YP_005703155.1 387154219 12868217 complement(2688524..2690722) 1 NC_017310.1 KEGG: dde:Dde_2669 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein; ferrous iron transport protein B 2690722 12868217 Deval_2373 Desulfovibrio vulgaris RCH1 ferrous iron transport protein B YP_005703155.1 2688524 R 573059 CDS YP_005703156.1 387154220 12868218 complement(2690719..2690979) 1 NC_017310.1 PFAM: FeoA family protein; KEGG: dde:Dde_2670 ferrous iron transport protein A, putative; FeoA family protein 2690979 12868218 Deval_2374 Desulfovibrio vulgaris RCH1 FeoA family protein YP_005703156.1 2690719 R 573059 CDS YP_005703157.1 387154221 12868219 complement(2691060..2691215) 1 NC_017310.1 KEGG: dde:Dde_2672 hypothetical protein; hypothetical protein 2691215 12868219 Deval_2375 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703157.1 2691060 R 573059 CDS YP_005703158.1 387154222 12868220 complement(2691247..2691483) 1 NC_017310.1 PFAM: FeoA family protein; KEGG: dde:Dde_2673 ferrous ion transport protein, putative; FeoA family protein 2691483 12868220 Deval_2376 Desulfovibrio vulgaris RCH1 FeoA family protein YP_005703158.1 2691247 R 573059 CDS YP_005703159.1 387154223 12868221 2691720..2692820 1 NC_017310.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1186 M20/M25/M40 family peptidase; peptidase M20 2692820 12868221 Deval_2377 Desulfovibrio vulgaris RCH1 peptidase M20 YP_005703159.1 2691720 D 573059 CDS YP_005703160.1 387154224 12868222 2692817..2693782 1 NC_017310.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2693782 12868222 Deval_2378 Desulfovibrio vulgaris RCH1 oligopeptide/dipeptide ABC transporter ATPase YP_005703160.1 2692817 D 573059 CDS YP_005703161.1 387154225 12868223 2693877..2694527 1 NC_017310.1 KEGG: dde:Dde_2674 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family two component transcriptional regulator 2694527 12868223 Deval_2379 Desulfovibrio vulgaris RCH1 LuxR family two component transcriptional regulator YP_005703161.1 2693877 D 573059 CDS YP_005703162.1 387154226 12868225 2694854..2695543 1 NC_017310.1 KEGG: tbd:Tbd_0987 multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver; response regulator receiver and Hpt phospho transfer protein 2695543 12868225 Deval_2380 Desulfovibrio vulgaris RCH1 response regulator receiver and Hpt phospho transfer protein YP_005703162.1 2694854 D 573059 CDS YP_005703163.1 387154227 12868231 2701866..2702495 1 NC_017310.1 KEGG: dde:Dde_1288 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 2702495 12868231 Deval_2381 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703163.1 2701866 D 573059 CDS YP_005703164.1 387154228 12868232 2702626..2706657 1 NC_017310.1 KEGG: dds:Ddes_2361 ATP-binding region ATPase domain protein; PFAM: response regulator receiver; Diverse 7TM receptor extracellular region 2; SMART: response regulator receiver; ATP-binding region ATPase domain protein; multi-sensor hybrid histidine kinase 2706657 12868232 Deval_2382 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005703164.1 2702626 D 573059 CDS YP_005703165.1 387154229 12868233 2706654..2707094 1 NC_017310.1 KEGG: cwo:Cwoe_5732 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2707094 12868233 Deval_2383 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703165.1 2706654 D 573059 CDS YP_005703166.1 387154230 12868234 2707167..2707754 1 NC_017310.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_1283 TetR family transcriptional regulator; TetR family transcriptional regulator 2707754 12868234 Deval_2384 Desulfovibrio vulgaris RCH1 TetR family transcriptional regulator YP_005703166.1 2707167 D 573059 CDS YP_005703167.1 387154231 12868235 2707987..2708493 1 NC_017310.1 KEGG: dde:Dde_2160 hypothetical protein; hypothetical protein 2708493 12868235 Deval_2385 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703167.1 2707987 D 573059 CDS YP_005703168.1 387154232 12868236 2708955..2709887 1 NC_017310.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: dba:Dbac_0023 Mg2 transporter protein CorA family protein; Mg2 transporter protein CorA family protein 2709887 12868236 Deval_2386 Desulfovibrio vulgaris RCH1 Mg2 transporter protein CorA family protein YP_005703168.1 2708955 D 573059 CDS YP_005703169.1 387154233 12868237 2710126..2712006 1 NC_017310.1 KEGG: dma:DMR_37860 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2712006 12868237 Deval_2387 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005703169.1 2710126 D 573059 CDS YP_005703170.1 387154234 12868238 complement(2712305..2713987) 1 NC_017310.1 KEGG: dde:Dde_1281 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2713987 12868238 Deval_2388 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703170.1 2712305 R 573059 CDS YP_005703171.1 387154235 12868239 complement(2714179..2715564) 1 NC_017310.1 KEGG: dma:DMR_45890 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 2715564 12868239 Deval_2389 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005703171.1 2714179 R 573059 CDS YP_005703172.1 387154236 12868240 complement(2715533..2716213) 1 NC_017310.1 KEGG: rce:RC1_0686 two-component transcriptional regulator, putative; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator 2716213 12868240 Deval_2390 Desulfovibrio vulgaris RCH1 winged helix family two component transcriptional regulator YP_005703172.1 2715533 R 573059 CDS YP_005703173.1 387154237 12868241 2716542..2718107 1 NC_017310.1 PFAM: protein of unknown function DUF438; Domain of unknown function DUF1858; Hemerythrin HHE cation binding domain protein; KEGG: dds:Ddes_1165 protein of unknown function DUF438; hypothetical protein 2718107 12868241 Deval_2391 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703173.1 2716542 D 573059 CDS YP_005703174.1 387154238 12868242 complement(2718253..2718762) 1 NC_017310.1 KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 2718762 12868242 Deval_2392 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703174.1 2718253 R 573059 CDS YP_005703175.1 387154239 12868243 complement(2718755..2719093) 1 NC_017310.1 KEGG: apb:SAR116_2345 hypothetical protein; hypothetical protein 2719093 12868243 Deval_2393 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703175.1 2718755 R 573059 CDS YP_005703176.1 387154240 12868244 complement(2719096..2720148) 1 NC_017310.1 KEGG: dde:Dde_1065 hypothetical protein; hypothetical protein 2720148 12868244 Deval_2394 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703176.1 2719096 R 573059 CDS YP_005703177.1 387154241 12868245 complement(2720264..2720737) 1 NC_017310.1 KEGG: dde:Dde_2543 hypothetical protein; hypothetical protein 2720737 12868245 Deval_2395 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703177.1 2720264 R 573059 CDS YP_005703178.1 387154242 12868246 complement(2720683..2721258) 1 NC_017310.1 KEGG: ecv:APECO1_4050 hypothetical protein; hypothetical protein 2721258 12868246 Deval_2396 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703178.1 2720683 R 573059 CDS YP_005703179.1 387154243 12868248 complement(2723354..2723908) 1 NC_017310.1 KEGG: dde:Dde_2546 hypothetical protein; hypothetical protein 2723908 12868248 Deval_2398 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703179.1 2723354 R 573059 CDS YP_005703180.1 387154244 12868249 complement(2723898..2724341) 1 NC_017310.1 KEGG: lif:LinJ29.0910 U3 small nucleolar ribonucleoprotein protein MPP10; hypothetical protein 2724341 12868249 Deval_2399 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703180.1 2723898 R 573059 CDS YP_005703181.1 387154245 12868250 complement(2724482..2724883) 1 NC_017310.1 KEGG: vap:Vapar_4258 histidine kinase; hypothetical protein 2724883 12868250 Deval_2400 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703181.1 2724482 R 573059 CDS YP_005703182.1 387154246 12868251 complement(2724910..2725824) 1 NC_017310.1 KEGG: dde:Dde_2547 hypothetical protein; hypothetical protein 2725824 12868251 Deval_2401 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703182.1 2724910 R 573059 CDS YP_005703183.1 387154247 12868252 complement(2725836..2726588) 1 NC_017310.1 KEGG: dde:Dde_2548 hypothetical protein; hypothetical protein 2726588 12868252 Deval_2402 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703183.1 2725836 R 573059 CDS YP_005703184.1 387154248 12868253 complement(2726581..2726988) 1 NC_017310.1 KEGG: dde:Dde_2549 hypothetical protein; hypothetical protein 2726988 12868253 Deval_2403 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703184.1 2726581 R 573059 CDS YP_005703185.1 387154249 12868254 complement(2726978..2728687) 1 NC_017310.1 KEGG: dde:Dde_2550 hypothetical protein; hypothetical protein 2728687 12868254 Deval_2404 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703185.1 2726978 R 573059 CDS YP_005703186.1 387154250 12868255 complement(2728687..2728905) 1 NC_017310.1 KEGG: dde:Dde_2551 hypothetical protein; hypothetical protein 2728905 12868255 Deval_2405 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703186.1 2728687 R 573059 CDS YP_005703187.1 387154251 12868256 2729571..2730197 1 NC_017310.1 KEGG: dma:DMR_15690 hypothetical protein; hypothetical protein 2730197 12868256 Deval_2406 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703187.1 2729571 D 573059 CDS YP_005703188.1 387154252 12868257 2730213..2731058 1 NC_017310.1 KEGG: lip:LI0482 flagellar motor protein MotA; flagellar motor protein MotA 2731058 12868257 Deval_2407 Desulfovibrio vulgaris RCH1 flagellar motor protein MotA YP_005703188.1 2730213 D 573059 CDS YP_005703189.1 387154253 12868258 2731085..2731816 1 NC_017310.1 PFAM: OmpA/MotB domain protein; KEGG: dds:Ddes_2180 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2731816 12868258 Deval_2408 Desulfovibrio vulgaris RCH1 OmpA/MotB domain-containing protein YP_005703189.1 2731085 D 573059 CDS YP_005703190.1 387154254 12868259 complement(2731850..2732608) 1 NC_017310.1 KEGG: dde:Dde_2557 hypothetical protein; hypothetical protein 2732608 12868259 Deval_2409 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703190.1 2731850 R 573059 CDS YP_005703191.1 387154255 12868260 complement(2732601..2734160) 1 NC_017310.1 KEGG: dde:Dde_2556 phage uncharacterized protein-like; phage protein 2734160 12868260 Deval_2410 Desulfovibrio vulgaris RCH1 phage protein YP_005703191.1 2732601 R 573059 CDS YP_005703192.1 387154256 12868261 2734696..2735085 1 NC_017310.1 KEGG: saf:SULAZ_0562 hypothetical membrane protein; hypothetical protein 2735085 12868261 Deval_2411 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703192.1 2734696 D 573059 CDS YP_005703193.1 387154257 12868262 2735132..2735698 1 NC_017310.1 KEGG: tye:THEYE_A0371 peptidase, C39 family; hypothetical protein 2735698 12868262 Deval_2412 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703193.1 2735132 D 573059 CDS YP_005703194.1 387154258 12868263 2735911..2736390 1 NC_017310.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: tye:THEYE_A0702 tetratricopeptide repeat domain protein; hypothetical protein 2736390 12868263 Deval_2413 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703194.1 2735911 D 573059 CDS YP_005703195.1 387154259 12868264 2736993..2737841 1 NC_017310.1 KEGG: alv:Alvin_1375 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2737841 12868264 Deval_2414 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005703195.1 2736993 D 573059 CDS YP_005703196.1 387154260 12868265 2737859..2740861 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: dba:Dbac_1409 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; multi-sensor hybrid histidine kinase 2740861 12868265 Deval_2415 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005703196.1 2737859 D 573059 CDS YP_005703197.1 387154261 12868266 2741233..2742453 1 NC_017310.1 PFAM: sodium/calcium exchanger membrane region; KEGG: dds:Ddes_0594 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region 2742453 12868266 Deval_2416 Desulfovibrio vulgaris RCH1 sodium/calcium exchanger membrane region YP_005703197.1 2741233 D 573059 CDS YP_005703198.1 387154262 12868267 2742786..2743514 1 NC_017310.1 KEGG: dds:Ddes_0593 hypothetical protein; hypothetical protein 2743514 12868267 Deval_2417 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703198.1 2742786 D 573059 CDS YP_005703199.1 387154263 12868268 2743543..2744775 1 NC_017310.1 KEGG: dds:Ddes_1988 hypothetical protein; hypothetical protein 2744775 12868268 Deval_2418 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703199.1 2743543 D 573059 CDS YP_005703200.1 387154264 12868269 2745058..2745870 1 NC_017310.1 KEGG: dds:Ddes_1989 hypothetical protein; hypothetical protein 2745870 12868269 Deval_2419 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703200.1 2745058 D 573059 CDS YP_005703201.1 387154265 12868270 2746366..2746713 1 NC_017310.1 KEGG: mgr:MGG_03960 hypothetical protein; hypothetical protein 2746713 12868270 Deval_2420 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703201.1 2746366 D 573059 CDS YP_005703202.1 387154266 12868271 2746710..2747345 1 NC_017310.1 PFAM: Terminase small subunit; KEGG: dde:Dde_2568 hypothetical protein; terminase small subunit 2747345 12868271 Deval_2421 Desulfovibrio vulgaris RCH1 terminase small subunit YP_005703202.1 2746710 D 573059 CDS YP_005703203.1 387154267 12868272 2747533..2747739 1 NC_017310.1 KEGG: dde:Dde_2564 hypothetical protein; hypothetical protein 2747739 12868272 Deval_2422 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703203.1 2747533 D 573059 CDS YP_005703204.1 387154268 12868273 complement(2747782..2748159) 1 NC_017310.1 KEGG: rso:RSp0313 multidrug efflux system protein; hypothetical protein 2748159 12868273 Deval_2423 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703204.1 2747782 R 573059 CDS YP_005703205.1 387154269 12868274 complement(2748171..2748749) 1 NC_017310.1 KEGG: dde:Dde_1168 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 2748749 12868274 Deval_2424 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703205.1 2748171 R 573059 CDS YP_005703206.1 387154270 12868275 2748787..2749338 1 NC_017310.1 manually curated; KEGG: dde:Dde_2572 hypothetical protein; hypothetical protein 2749338 12868275 Deval_2425 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703206.1 2748787 D 573059 CDS YP_005703207.1 387154271 12868276 2749427..2750302 1 NC_017310.1 KEGG: scl:sce5864 hypothetical protein; hypothetical protein 2750302 12868276 Deval_2426 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703207.1 2749427 D 573059 CDS YP_005703208.1 387154272 12868277 complement(2750543..2750839) 1 NC_017310.1 KEGG: dde:Dde_1153 hypothetical protein; hypothetical protein 2750839 12868277 Deval_2427 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703208.1 2750543 R 573059 CDS YP_005703209.1 387154273 12868278 complement(2750866..2751237) 1 NC_017310.1 KEGG: cre:CHLREDRAFT_179319 hypothetical protein; hypothetical protein 2751237 12868278 Deval_2428 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703209.1 2750866 R 573059 CDS YP_005703210.1 387154274 12868279 complement(2751303..2751740) 1 NC_017310.1 KEGG: dde:Dde_1156 hypothetical protein; hypothetical protein 2751740 12868279 Deval_2429 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703210.1 2751303 R 573059 CDS YP_005703211.1 387154275 12868280 2751863..2752006 1 NC_017310.1 hypothetical protein 2752006 12868280 Deval_2430 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703211.1 2751863 D 573059 CDS YP_005703212.1 387154276 12868281 2752131..2752865 1 NC_017310.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: dde:Dde_1158 transcriptional regulator, putative; putative phage repressor 2752865 12868281 Deval_2431 Desulfovibrio vulgaris RCH1 putative phage repressor YP_005703212.1 2752131 D 573059 CDS YP_005703213.1 387154277 12868282 2752944..2753153 1 NC_017310.1 KEGG: api:100167325 similar to Rapgap1 CG34374-PD; hypothetical protein 2753153 12868282 Deval_2432 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703213.1 2752944 D 573059 CDS YP_005703214.1 387154278 12868283 2753341..2754474 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: drt:Dret_0291 glycosyl transferase group 1; group 1 glycosyl transferase 2754474 12868283 Deval_2433 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005703214.1 2753341 D 573059 CDS YP_005703215.1 387154279 12868284 complement(2754597..2755766) 1 NC_017310.1 KEGG: bgl:bglu_2g20040 MFS efflux pump, membrane fusion protein, EmrA subfamily protein; hypothetical protein 2755766 12868284 Deval_2434 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703215.1 2754597 R 573059 CDS YP_005703216.1 387154280 12868285 complement(2755829..2757454) 1 NC_017310.1 KEGG: gem:GM21_2693 histidine kinase; PFAM: Cache type 2 domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; PAS domain containing protein; putative PAS/PAC sensor protein 2757454 12868285 Deval_2435 Desulfovibrio vulgaris RCH1 putative PAS/PAC sensor protein YP_005703216.1 2755829 R 573059 CDS YP_005703217.1 387154281 12868286 complement(2757620..2758708) 1 NC_017310.1 KEGG: dde:Dde_2853 hypothetical protein; hypothetical protein 2758708 12868286 Deval_2436 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703217.1 2757620 R 573059 CDS YP_005703218.1 387154282 12868287 2758931..2759233 1 NC_017310.1 KEGG: dde:Dde_1149 hypothetical protein; hypothetical protein 2759233 12868287 Deval_2437 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703218.1 2758931 D 573059 CDS YP_005703219.1 387154283 12868288 2759586..2760326 1 NC_017310.1 KEGG: dds:Ddes_0999 putative lipoprotein; hypothetical protein 2760326 12868288 Deval_2438 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703219.1 2759586 D 573059 CDS YP_005703220.1 387154284 12868289 2760348..2761082 1 NC_017310.1 KEGG: dds:Ddes_0999 putative lipoprotein; putative lipoprotein 2761082 12868289 Deval_2439 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005703220.1 2760348 D 573059 CDS YP_005703221.1 387154285 12868290 2761148..2761591 1 NC_017310.1 PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: dba:Dbac_3447 threonyl/alanyl tRNA synthetase SAD; threonyl/alanyl tRNA synthetase SAD 2761591 12868290 Deval_2440 Desulfovibrio vulgaris RCH1 threonyl/alanyl tRNA synthetase SAD YP_005703221.1 2761148 D 573059 CDS YP_005703222.1 387154286 12868291 2761772..2763685 1 NC_017310.1 PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; KEGG: dde:Dde_1147 heat shock protein 90; Heat shock protein Hsp90-like protein 2763685 12868291 Deval_2441 Desulfovibrio vulgaris RCH1 Heat shock protein Hsp90-like protein YP_005703222.1 2761772 D 573059 CDS YP_005703223.1 387154287 12868292 complement(2764084..2764755) 1 NC_017310.1 KEGG: dsa:Desal_1386 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 2764755 12868292 Deval_2442 Desulfovibrio vulgaris RCH1 GntR family transcriptional regulator YP_005703223.1 2764084 R 573059 CDS YP_005703224.1 387154288 12868293 complement(2764899..2766299) 1 NC_017310.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: dde:Dde_2580 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC-like protein 2766299 12868293 Deval_2443 Desulfovibrio vulgaris RCH1 Na+/H+ antiporter NhaC-like protein YP_005703224.1 2764899 R 573059 CDS YP_005703225.1 387154289 12868294 complement(2766362..2767360) 1 NC_017310.1 KEGG: dsa:Desal_1391 pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; D-cysteine desulfhydrase family pyridoxal phosphate-dependent protein 2767360 12868294 Deval_2444 Desulfovibrio vulgaris RCH1 D-cysteine desulfhydrase family pyridoxal phosphate-dependent protein YP_005703225.1 2766362 R 573059 CDS YP_005703226.1 387154290 12868295 complement(2767410..2767799) 1 NC_017310.1 KEGG: dde:Dde_2582 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2767799 12868295 Deval_2445 Desulfovibrio vulgaris RCH1 endoribonuclease L-PSP YP_005703226.1 2767410 R 573059 CDS YP_005703227.1 387154291 12868296 complement(2768829..2769380) 1 NC_017310.1 KEGG: dsa:Desal_1854 hypothetical protein; hypothetical protein 2769380 12868296 Deval_2446 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703227.1 2768829 R 573059 CDS YP_005703228.1 387154292 12868297 complement(2769956..2770537) 1 NC_017310.1 KEGG: dsa:Desal_1854 hypothetical protein; hypothetical protein 2770537 12868297 Deval_2447 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703228.1 2769956 R 573059 CDS YP_005703229.1 387154293 12868298 2771494..2772819 1 NC_017310.1 KEGG: dds:Ddes_0284 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; serine-type D-Ala-D-Ala carboxypeptidase 2772819 12868298 Deval_2448 Desulfovibrio vulgaris RCH1 serine-type D-Ala-D-Ala carboxypeptidase YP_005703229.1 2771494 D 573059 CDS YP_005703230.1 387154294 12868299 complement(2773177..2773539) 1 NC_017310.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mxa:MXAN_6868 putative 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl-tetrahydropterin synthase 2773539 12868299 Deval_2449 Desulfovibrio vulgaris RCH1 6-pyruvoyl-tetrahydropterin synthase YP_005703230.1 2773177 R 573059 CDS YP_005703231.1 387154295 12868300 complement(2773802..2774452) 1 NC_017310.1 PFAM: Radical SAM domain protein; KEGG: xau:Xaut_3190 hypothetical protein; radical SAM protein 2774452 12868300 Deval_2450 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703231.1 2773802 R 573059 CDS YP_005703232.1 387154296 12868301 complement(2774449..2775177) 1 NC_017310.1 KEGG: gdj:Gdia_3394 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like; exsB protein 2775177 12868301 Deval_2451 Desulfovibrio vulgaris RCH1 exsB protein YP_005703232.1 2774449 R 573059 CDS YP_005703233.1 387154297 12868302 2775555..2777120 1 NC_017310.1 KEGG: pna:Pnap_4517 bilirubin oxidase; bilirubin oxidase 2777120 12868302 Deval_2452 Desulfovibrio vulgaris RCH1 bilirubin oxidase YP_005703233.1 2775555 D 573059 CDS YP_005703234.1 387154298 12868303 2777294..2778031 1 NC_017310.1 PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein; family 3 extracellular solute-binding protein 2778031 12868303 Deval_2453 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005703234.1 2777294 D 573059 CDS YP_005703235.1 387154299 12868304 complement(2778056..2778532) 1 NC_017310.1 KEGG: dma:DMR_36210 hypothetical protein; hypothetical protein 2778532 12868304 Deval_2454 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703235.1 2778056 R 573059 CDS YP_005703236.1 387154300 12868305 complement(2778535..2779401) 1 NC_017310.1 KEGG: dds:Ddes_0784 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2779401 12868305 Deval_2455 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703236.1 2778535 R 573059 CDS YP_005703237.1 387154301 12868306 complement(2779433..2780356) 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0783 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2780356 12868306 Deval_2456 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005703237.1 2779433 R 573059 CDS YP_005703238.1 387154302 12868307 complement(2780353..2781225) 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0782 phosphate transporter permease PstC; binding-protein-dependent transport system inner membrane protein 2781225 12868307 Deval_2457 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005703238.1 2780353 R 573059 CDS YP_005703239.1 387154303 12868308 complement(2781225..2782103) 1 NC_017310.1 TIGRFAM: phosphate binding protein; KEGG: dds:Ddes_0781 phosphate binding protein; phosphate binding protein 2782103 12868308 Deval_2458 Desulfovibrio vulgaris RCH1 phosphate binding protein YP_005703239.1 2781225 R 573059 CDS YP_005703240.1 387154304 12868309 2782549..2783916 1 NC_017310.1 KEGG: dde:Dde_0981 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; UDP-N-acetylglucosamine pyrophosphorylase 2783916 12868309 Deval_2459 Desulfovibrio vulgaris RCH1 UDP-N-acetylglucosamine pyrophosphorylase YP_005703240.1 2782549 D 573059 CDS YP_005703241.1 387154305 12868310 2783948..2784184 1 NC_017310.1 KEGG: dde:Dde_0980 hypothetical protein; hypothetical protein 2784184 12868310 Deval_2460 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703241.1 2783948 D 573059 CDS YP_005703242.1 387154306 12868311 2784204..2784467 1 NC_017310.1 KEGG: dde:Dde_0979 hypothetical protein; hypothetical protein 2784467 12868311 Deval_2461 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703242.1 2784204 D 573059 CDS YP_005703243.1 387154307 12868313 2784859..2786418 1 NC_017310.1 TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; KEGG: dde:Dde_0978 phosphodiesterase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; metal dependent phosphohydrolase 2786418 12868313 Deval_2462 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005703243.1 2784859 D 573059 CDS YP_005703244.1 387154308 12868314 2786516..2787139 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0126; KEGG: gsu:GSU1208 hypothetical protein; hypothetical protein 2787139 12868314 Deval_2463 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703244.1 2786516 D 573059 CDS YP_005703245.1 387154309 12868315 2787126..2787716 1 NC_017310.1 KEGG: bfu:BC1G_11953 hypothetical protein; hypothetical protein 2787716 12868315 Deval_2464 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703245.1 2787126 D 573059 CDS YP_005703246.1 387154310 12868316 2787695..2788864 1 NC_017310.1 PFAM: FAD dependent oxidoreductase; KEGG: tpe:Tpen_1127 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2788864 12868316 Deval_2465 Desulfovibrio vulgaris RCH1 FAD dependent oxidoreductase YP_005703246.1 2787695 D 573059 CDS YP_005703247.1 387154311 12868317 2788866..2789585 1 NC_017310.1 KEGG: bfa:Bfae_21340 succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2789585 12868317 Deval_2466 Desulfovibrio vulgaris RCH1 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_005703247.1 2788866 D 573059 CDS YP_005703248.1 387154312 12868318 complement(2789807..2790559) 1 NC_017310.1 KEGG: dde:Dde_0977 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; LuxR family two component transcriptional regulator 2790559 12868318 Deval_2467 Desulfovibrio vulgaris RCH1 LuxR family two component transcriptional regulator YP_005703248.1 2789807 R 573059 CDS YP_005703249.1 387154313 12868319 2790741..2791007 1 NC_017310.1 KEGG: dde:Dde_0976 hypothetical protein; hypothetical protein 2791007 12868319 Deval_2468 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703249.1 2790741 D 573059 CDS YP_005703250.1 387154314 12868320 2791135..2792598 1 NC_017310.1 KEGG: dma:DMR_28620 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; response regulator receiver sensor signal transduction histidine kinase 2792598 12868320 Deval_2469 Desulfovibrio vulgaris RCH1 response regulator receiver sensor signal transduction histidine kinase YP_005703250.1 2791135 D 573059 CDS YP_005703251.1 387154315 12868321 2792595..2793797 1 NC_017310.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA-specific-like; pseudouridine synthase 2793797 12868321 Deval_2470 Desulfovibrio vulgaris RCH1 pseudouridine synthase YP_005703251.1 2792595 D 573059 CDS YP_005703252.1 387154316 12868322 complement(2793811..2796828) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_34360 putative two-component hybrid sensor and regulator; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein; GAF domain protein; multi-sensor hybrid histidine kinase 2796828 12868322 Deval_2471 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005703252.1 2793811 R 573059 CDS YP_005703253.1 387154317 12868323 2797167..2797613 1 NC_017310.1 KEGG: dde:Dde_3667 flavodoxin, short chain; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; flavodoxin 2797613 12868323 Deval_2472 Desulfovibrio vulgaris RCH1 flavodoxin YP_005703253.1 2797167 D 573059 CDS YP_005703254.1 387154318 12868324 complement(2797614..2797772) 1 NC_017310.1 hypothetical protein 2797772 12868324 Deval_2473 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703254.1 2797614 R 573059 CDS YP_005703255.1 387154319 12868325 complement(2797735..2797917) 1 NC_017310.1 hypothetical protein 2797917 12868325 Deval_2474 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703255.1 2797735 R 573059 CDS YP_005703256.1 387154320 12868326 complement(2798350..2798991) 1 NC_017310.1 PFAM: SNARE associated Golgi protein; KEGG: dds:Ddes_1987 SNARE associated Golgi protein; hypothetical protein 2798991 12868326 Deval_2475 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703256.1 2798350 R 573059 CDS YP_005703257.1 387154321 12868327 2799458..2799631 1 NC_017310.1 KEGG: rec:RHECIAT_CH0003295 hypothetical protein; hypothetical protein 2799631 12868327 Deval_2476 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703257.1 2799458 D 573059 CDS YP_005703258.1 387154322 12868328 2799776..2801326 1 NC_017310.1 KEGG: L-lactate permease family protein, putative; L-lactate permease family protein, putative 2801326 12868328 Deval_2477 Desulfovibrio vulgaris RCH1 L-lactate permease family protein, putative YP_005703258.1 2799776 D 573059 CDS YP_005703259.1 387154323 12868329 complement(2801475..2802155) 1 NC_017310.1 PFAM: type IV pilus assembly PilZ; KEGG: dma:DMR_17480 hypothetical protein; type IV pilus assembly PilZ 2802155 12868329 Deval_2478 Desulfovibrio vulgaris RCH1 type IV pilus assembly PilZ YP_005703259.1 2801475 R 573059 CDS YP_005703260.1 387154324 12868330 complement(2802723..2803505) 1 NC_017310.1 PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: dds:Ddes_0819 putative phage repressor; putative phage repressor 2803505 12868330 Deval_2479 Desulfovibrio vulgaris RCH1 putative phage repressor YP_005703260.1 2802723 R 573059 CDS YP_005703261.1 387154325 12868331 2803764..2804222 1 NC_017310.1 KEGG: dde:Dde_3347 hypothetical protein; hypothetical protein 2804222 12868331 Deval_2480 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703261.1 2803764 D 573059 CDS YP_005703262.1 387154326 12868332 2804197..2804439 1 NC_017310.1 KEGG: dde:Dde_3348 hypothetical protein; hypothetical protein 2804439 12868332 Deval_2481 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703262.1 2804197 D 573059 CDS YP_005703263.1 387154327 12868333 2804457..2806652 1 NC_017310.1 PFAM: Transposase-like Mu ; Integrase catalytic region; MuA-transposase/repressor protein CI DNA-binding; KEGG: slt:Slit_0191 transposase-like Mu; transposase-like Mu 2806652 12868333 Deval_2482 Desulfovibrio vulgaris RCH1 transposase-like Mu YP_005703263.1 2804457 D 573059 CDS YP_005703264.1 387154328 12868334 2806661..2807446 1 NC_017310.1 KEGG: slt:Slit_0192 bacteriophage DNA transposition B protein; bacteriophage DNA transposition B protein 2807446 12868334 Deval_2483 Desulfovibrio vulgaris RCH1 bacteriophage DNA transposition B protein YP_005703264.1 2806661 D 573059 CDS YP_005703265.1 387154329 12868335 2807449..2808036 1 NC_017310.1 KEGG: slt:Slit_0193 hypothetical protein; hypothetical protein 2808036 12868335 Deval_2484 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703265.1 2807449 D 573059 CDS YP_005703266.1 387154330 12868336 2808029..2808358 1 NC_017310.1 KEGG: slt:Slit_0194 regulatory protein, LacI; regulatory protein, LacI 2808358 12868336 Deval_2485 Desulfovibrio vulgaris RCH1 regulatory protein, LacI YP_005703266.1 2808029 D 573059 CDS YP_005703267.1 387154331 12868337 2808361..2808843 1 NC_017310.1 KEGG: art:Arth_4449 heavy metal translocating P-type ATPase; hypothetical protein 2808843 12868337 Deval_2486 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703267.1 2808361 D 573059 CDS YP_005703268.1 387154332 12868338 2808853..2809089 1 NC_017310.1 KEGG: rfr:Rfer_1869 two component LuxR family transcriptional regulator; two component LuxR family transcriptional regulator 2809089 12868338 Deval_2487 Desulfovibrio vulgaris RCH1 two component LuxR family transcriptional regulator YP_005703268.1 2808853 D 573059 CDS YP_005703269.1 387154333 12868339 2809175..2809414 1 NC_017310.1 KEGG: dsy:DSY2191 hypothetical protein; hypothetical protein 2809414 12868339 Deval_2488 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703269.1 2809175 D 573059 CDS YP_005703270.1 387154334 12868340 2809496..2809930 1 NC_017310.1 KEGG: dde:Dde_3357 hypothetical protein; hypothetical protein 2809930 12868340 Deval_2489 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703270.1 2809496 D 573059 CDS YP_005703271.1 387154335 12868341 2809939..2810355 1 NC_017310.1 KEGG: pag:PLES_15631 hypothetical protein; hypothetical protein 2810355 12868341 Deval_2490 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703271.1 2809939 D 573059 CDS YP_005703272.1 387154336 12868342 2810364..2810840 1 NC_017310.1 PFAM: Mor transcription activator domain protein; KEGG: lhk:LHK_01158 putative bacteriophage DNA transposition protein B; Mor transcription activator domain-containing protein 2810840 12868342 Deval_2491 Desulfovibrio vulgaris RCH1 Mor transcription activator domain-containing protein YP_005703272.1 2810364 D 573059 CDS YP_005703273.1 387154337 12868343 2810853..2811191 1 NC_017310.1 KEGG: slt:Slit_0215 hypothetical protein; hypothetical protein 2811191 12868343 Deval_2492 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703273.1 2810853 D 573059 CDS YP_005703274.1 387154338 12868344 2811304..2811666 1 NC_017310.1 KEGG: bcj:BCAS0534 holin; Lipoprotein, putative 2811666 12868344 Deval_2493 Desulfovibrio vulgaris RCH1 Lipoprotein, putative YP_005703274.1 2811304 D 573059 CDS YP_005703275.1 387154339 12868345 2811666..2812313 1 NC_017310.1 PFAM: Lytic transglycosylase catalytic; KEGG: lip:LIC036 putative lytic murein transglycosylase precursor; lytic transglycosylase 2812313 12868345 Deval_2494 Desulfovibrio vulgaris RCH1 lytic transglycosylase YP_005703275.1 2811666 D 573059 CDS YP_005703276.1 387154340 12868346 2812306..2812725 1 NC_017310.1 KEGG: hip:CGSHiEE_01085 cell envelope integrity inner membrane protein TolA; hypothetical protein 2812725 12868346 Deval_2495 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703276.1 2812306 D 573059 CDS YP_005703277.1 387154341 12868347 2812679..2812972 1 NC_017310.1 KEGG: dra:DR_A0292 hypothetical protein; hypothetical protein 2812972 12868347 Deval_2496 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703277.1 2812679 D 573059 CDS YP_005703278.1 387154342 12868348 2812976..2813257 1 NC_017310.1 KEGG: lhk:LHK_01154 hypothetical protein; hypothetical protein 2813257 12868348 Deval_2497 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703278.1 2812976 D 573059 CDS YP_005703279.1 387154343 12868349 2813244..2813459 1 NC_017310.1 KEGG: bvi:Bcep1808_1310 hypothetical protein; hypothetical protein 2813459 12868349 Deval_2498 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703279.1 2813244 D 573059 CDS YP_005703280.1 387154344 12868350 2813461..2813979 1 NC_017310.1 PFAM: protein of unknown function DUF1804; KEGG: slt:Slit_0222 protein of unknown function DUF1804; hypothetical protein 2813979 12868350 Deval_2499 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703280.1 2813461 D 573059 CDS YP_005703281.1 387154345 12868351 2813976..2815652 1 NC_017310.1 TIGRFAM: phage uncharacterized protein; KEGG: pag:PLES_15721 phage uncharacterized protein; phage protein 2815652 12868351 Deval_2500 Desulfovibrio vulgaris RCH1 phage protein YP_005703281.1 2813976 D 573059 CDS YP_005703282.1 387154346 12868352 2815639..2817357 1 NC_017310.1 PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein; hypothetical protein 2817357 12868352 Deval_2501 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703282.1 2815639 D 573059 CDS YP_005703283.1 387154347 12868353 2817360..2818610 1 NC_017310.1 KEGG: bcj:BCAS0526 phage Mu F virion morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; phage head morphogenesis protein 2818610 12868353 Deval_2502 Desulfovibrio vulgaris RCH1 phage head morphogenesis protein YP_005703283.1 2817360 D 573059 CDS YP_005703284.1 387154348 12868354 2818775..2819263 1 NC_017310.1 TIGRFAM: phage virion morphogenesis protein; KEGG: tgr:Tgr7_0435 phage virion morphogenesis protein; phage virion morphogenesis protein 2819263 12868354 Deval_2503 Desulfovibrio vulgaris RCH1 phage virion morphogenesis protein YP_005703284.1 2818775 D 573059 CDS YP_005703285.1 387154349 12868355 2819970..2821151 1 NC_017310.1 PFAM: Mu-like prophage I protein; KEGG: bvi:Bcep1808_1303 hypothetical protein; Mu-like prophage I protein 2821151 12868355 Deval_2504 Desulfovibrio vulgaris RCH1 Mu-like prophage I protein YP_005703285.1 2819970 D 573059 CDS YP_005703286.1 387154350 12868356 2821152..2822081 1 NC_017310.1 KEGG: lip:LIC067 hypothetical protein; hypothetical protein 2822081 12868356 Deval_2505 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703286.1 2821152 D 573059 CDS YP_005703287.1 387154351 12868357 2822093..2822422 1 NC_017310.1 KEGG: kra:Krad_1551 DNA-binding protein; hypothetical protein 2822422 12868357 Deval_2506 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703287.1 2822093 D 573059 CDS YP_005703288.1 387154352 12868358 2822422..2822853 1 NC_017310.1 PFAM: protein of unknown function DUF1320; KEGG: slt:Slit_0232 protein of unknown function DUF1320; hypothetical protein 2822853 12868358 Deval_2507 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703288.1 2822422 D 573059 CDS YP_005703289.1 387154353 12868359 2822850..2823479 1 NC_017310.1 PFAM: Domain of unknown function DUF1834; KEGG: slt:Slit_0233 domain of unknown function DUF1834; hypothetical protein 2823479 12868359 Deval_2508 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703289.1 2822850 D 573059 CDS YP_005703290.1 387154354 12868360 2823482..2823667 1 NC_017310.1 KEGG: hsm:HSM_0675 hypothetical protein; hypothetical protein 2823667 12868360 Deval_2509 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703290.1 2823482 D 573059 CDS YP_005703291.1 387154355 12868361 2823654..2825075 1 NC_017310.1 KEGG: lhk:LHK_01152 probable phage sheath protein; putative phage sheath protein 2825075 12868361 Deval_2510 Desulfovibrio vulgaris RCH1 putative phage sheath protein YP_005703291.1 2823654 D 573059 CDS YP_005703292.1 387154356 12868362 2825154..2825981 1 NC_017310.1 KEGG: vvu:VV1_0379 hypothetical protein; hypothetical protein 2825981 12868362 Deval_2511 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703292.1 2825154 D 573059 CDS YP_005703293.1 387154357 12868363 2826117..2826491 1 NC_017310.1 KEGG: lhk:LHK_01151 hypothetical protein; hypothetical protein 2826491 12868363 Deval_2512 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703293.1 2826117 D 573059 CDS YP_005703294.1 387154358 12868364 2826689..2827018 1 NC_017310.1 KEGG: lip:LIC072 hypothetical protein; hypothetical protein 2827018 12868364 Deval_2513 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703294.1 2826689 D 573059 CDS YP_005703295.1 387154359 12868365 2827177..2829117 1 NC_017310.1 PFAM: tail tape measure protein TP901 core region; KEGG: bvi:Bcep1808_1293 TP901 family phage tail tape measure protein; tail tape measure protein TP901 core region 2829117 12868365 Deval_2514 Desulfovibrio vulgaris RCH1 tail tape measure protein TP901 core region YP_005703295.1 2827177 D 573059 CDS YP_005703296.1 387154360 12868366 2829137..2830477 1 NC_017310.1 PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein; DNA circulation family protein 2830477 12868366 Deval_2515 Desulfovibrio vulgaris RCH1 DNA circulation family protein YP_005703296.1 2829137 D 573059 CDS YP_005703297.1 387154361 12868367 2830467..2831621 1 NC_017310.1 KEGG: bbr:BB3615 putative phage tail protein; putative phage tail protein 2831621 12868367 Deval_2516 Desulfovibrio vulgaris RCH1 putative phage tail protein YP_005703297.1 2830467 D 573059 CDS YP_005703298.1 387154362 12868368 2831618..2832244 1 NC_017310.1 KEGG: lhk:LHK_01147 probable bacteriophage base plate protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; phage baseplate assembly protein V 2832244 12868368 Deval_2517 Desulfovibrio vulgaris RCH1 phage baseplate assembly protein V YP_005703298.1 2831618 D 573059 CDS YP_005703299.1 387154363 12868369 2832705..2833061 1 NC_017310.1 PFAM: GP46 family protein; KEGG: bbr:BB3613 hypothetical protein; GP46 family protein 2833061 12868369 Deval_2518 Desulfovibrio vulgaris RCH1 GP46 family protein YP_005703299.1 2832705 D 573059 CDS YP_005703300.1 387154364 12868370 2833071..2834132 1 NC_017310.1 PFAM: Baseplate J family protein; KEGG: lhk:LHK_01145 probable phage FluMu protein GP47; baseplate J family protein 2834132 12868370 Deval_2519 Desulfovibrio vulgaris RCH1 baseplate J family protein YP_005703300.1 2833071 D 573059 CDS YP_005703301.1 387154365 12868371 2834129..2834722 1 NC_017310.1 KEGG: lip:LIC089 hypothetical protein; hypothetical protein 2834722 12868371 Deval_2520 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703301.1 2834129 D 573059 CDS YP_005703302.1 387154366 12868372 2834806..2835696 1 NC_017310.1 KEGG: ypb:YPTS_1377 tail collar domain-containing protein; tail collar domain-containing protein 2835696 12868372 Deval_2521 Desulfovibrio vulgaris RCH1 tail collar domain-containing protein YP_005703302.1 2834806 D 573059 CDS YP_005703303.1 387154367 12868373 2835706..2836245 1 NC_017310.1 KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 2836245 12868373 Deval_2522 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703303.1 2835706 D 573059 CDS YP_005703304.1 387154368 12868374 2836546..2836746 1 NC_017310.1 manually curated; KEGG: dde:Dde_3395 hypothetical protein; hypothetical protein 2836746 12868374 Deval_2523 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703304.1 2836546 D 573059 CDS YP_005703305.1 387154369 12868375 2836719..2837468 1 NC_017310.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dma:DMR_29400 hypothetical protein; DNA methylase N-4/N-6 domain-containing protein 2837468 12868375 Deval_2524 Desulfovibrio vulgaris RCH1 DNA methylase N-4/N-6 domain-containing protein YP_005703305.1 2836719 D 573059 CDS YP_005703306.1 387154370 12868377 2838170..2839240 1 NC_017310.1 PFAM: Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; KEGG: dds:Ddes_0938 domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; hypothetical protein 2839240 12868377 Deval_2525 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703306.1 2838170 D 573059 CDS YP_005703307.1 387154371 12868378 2839351..2840649 1 NC_017310.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0972 phenylacetate-CoA ligase; AMP-dependent synthetase and ligase 2840649 12868378 Deval_2526 Desulfovibrio vulgaris RCH1 AMP-dependent synthetase and ligase YP_005703307.1 2839351 D 573059 CDS YP_005703308.1 387154372 12868379 2840831..2841340 1 NC_017310.1 PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein; hypothetical protein 2841340 12868379 Deval_2527 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703308.1 2840831 D 573059 CDS YP_005703309.1 387154373 12868380 2841674..2842438 1 NC_017310.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_0974 RNA methyltransferase; tRNA/rRNA methyltransferase SpoU 2842438 12868380 Deval_2528 Desulfovibrio vulgaris RCH1 tRNA/rRNA methyltransferase SpoU YP_005703309.1 2841674 D 573059 CDS YP_005703310.1 387154374 12868381 2842640..2845081 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold-4 domain protein; KEGG: dsa:Desal_1083 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2845081 12868381 Deval_2529 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005703310.1 2842640 D 573059 CDS YP_005703311.1 387154375 12868382 2845389..2848577 1 NC_017310.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dba:Dbac_1886 pyruvate phosphate dikinase PEP/pyruvate-binding; pyruvate phosphate dikinase PEP/pyruvate-binding protein 2848577 12868382 Deval_2530 Desulfovibrio vulgaris RCH1 pyruvate phosphate dikinase PEP/pyruvate-binding protein YP_005703311.1 2845389 D 573059 CDS YP_005703312.1 387154376 12868383 complement(2849055..2849780) 1 NC_017310.1 KEGG: dds:Ddes_2118 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2849780 12868383 Deval_2531 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703312.1 2849055 R 573059 CDS YP_005703313.1 387154377 12868384 complement(2849780..2850547) 1 NC_017310.1 KEGG: dsa:Desal_2946 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2850547 12868384 Deval_2532 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703313.1 2849780 R 573059 CDS YP_005703314.1 387154378 12868385 complement(2850557..2851633) 1 NC_017310.1 PFAM: inner-membrane translocator; KEGG: dsa:Desal_2945 inner-membrane translocator; inner-membrane translocator 2851633 12868385 Deval_2533 Desulfovibrio vulgaris RCH1 inner-membrane translocator YP_005703314.1 2850557 R 573059 CDS YP_005703315.1 387154379 12868386 complement(2851656..2852576) 1 NC_017310.1 PFAM: inner-membrane translocator; KEGG: dsa:Desal_2944 inner-membrane translocator; inner-membrane translocator 2852576 12868386 Deval_2534 Desulfovibrio vulgaris RCH1 inner-membrane translocator YP_005703315.1 2851656 R 573059 CDS YP_005703316.1 387154380 12868387 complement(2852686..2853843) 1 NC_017310.1 PFAM: Extracellular ligand-binding receptor; KEGG: dds:Ddes_2114 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2853843 12868387 Deval_2535 Desulfovibrio vulgaris RCH1 extracellular ligand-binding receptor YP_005703316.1 2852686 R 573059 CDS YP_005703317.1 387154381 12868388 2854221..2855165 1 NC_017310.1 KEGG: dba:Dbac_1615 hypothetical protein; hypothetical protein 2855165 12868388 Deval_2536 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703317.1 2854221 D 573059 CDS YP_005703318.1 387154382 12868389 2855583..2858627 1 NC_017310.1 KEGG: lip:LI0012 hypothetical protein; hypothetical protein 2858627 12868389 Deval_2537 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703318.1 2855583 D 573059 CDS YP_005703319.1 387154383 12868390 complement(2858759..2859547) 1 NC_017310.1 KEGG: dde:Dde_0801 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 2859547 12868390 Deval_2538 Desulfovibrio vulgaris RCH1 precorrin-4 C(11)-methyltransferase YP_005703319.1 2858759 R 573059 CDS YP_005703320.1 387154384 12868391 complement(2859550..2861421) 1 NC_017310.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 2861421 12868391 Deval_2539 Desulfovibrio vulgaris RCH1 precorrin-6y C5,15-methyltransferase subunit CbiE YP_005703320.1 2859550 R 573059 CDS YP_005703321.1 387154385 12868392 2861629..2861901 1 NC_017310.1 KEGG: gdi:GDI_3005 putative flavoproteins oxidoreductases; hypothetical protein 2861901 12868392 Deval_2540 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703321.1 2861629 D 573059 CDS YP_005703322.1 387154386 12868393 complement(2861868..2863037) 1 NC_017310.1 KEGG: dma:DMR_11840 putative cobalt-precorrin-6A synthase; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; cobalamin biosynthesis protein CbiD 2863037 12868393 Deval_2541 Desulfovibrio vulgaris RCH1 cobalamin biosynthesis protein CbiD YP_005703322.1 2861868 R 573059 CDS YP_005703323.1 387154387 12868394 2863207..2863707 1 NC_017310.1 PFAM: methylamine utilisation MauE; KEGG: dde:Dde_0805 hypothetical protein; methylamine utilization MauE 2863707 12868394 Deval_2542 Desulfovibrio vulgaris RCH1 methylamine utilization MauE YP_005703323.1 2863207 D 573059 CDS YP_005703324.1 387154388 12868395 2863718..2864239 1 NC_017310.1 KEGG: dde:Dde_0806 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 2864239 12868395 Deval_2543 Desulfovibrio vulgaris RCH1 Rhodanese domain-containing protein YP_005703324.1 2863718 D 573059 CDS YP_005703325.1 387154389 12868396 2864376..2865176 1 NC_017310.1 KEGG: drt:Dret_1057 C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein; C_GCAxxG_C_C family protein 2865176 12868396 Deval_2544 Desulfovibrio vulgaris RCH1 C_GCAxxG_C_C family protein YP_005703325.1 2864376 D 573059 CDS YP_005703326.1 387154390 12868397 complement(2865442..2866419) 1 NC_017310.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aeh:Mlg_2472 alcohol dehydrogenase; alcohol dehydrogenase 2866419 12868397 Deval_2545 Desulfovibrio vulgaris RCH1 alcohol dehydrogenase YP_005703326.1 2865442 R 573059 CDS YP_005703327.1 387154391 12868398 complement(2866696..2867538) 1 NC_017310.1 KEGG: dde:Dde_0799 hypothetical protein; hypothetical protein 2867538 12868398 Deval_2546 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703327.1 2866696 R 573059 CDS YP_005703328.1 387154392 12868399 2867985..2869103 1 NC_017310.1 PFAM: Radical SAM domain protein; KEGG: dde:Dde_0798 hypothetical protein; radical SAM protein 2869103 12868399 Deval_2547 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703328.1 2867985 D 573059 CDS YP_005703329.1 387154393 12868400 2869100..2870227 1 NC_017310.1 PFAM: Radical SAM domain protein; KEGG: dde:Dde_0797 hypothetical protein; radical SAM protein 2870227 12868400 Deval_2548 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703329.1 2869100 D 573059 CDS YP_005703330.1 387154394 12868401 2870289..2871131 1 NC_017310.1 PFAM: protein of unknown function DUF178; KEGG: dds:Ddes_1281 protein of unknown function DUF178; hypothetical protein 2871131 12868401 Deval_2549 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703330.1 2870289 D 573059 CDS YP_005703331.1 387154395 12868403 complement(2872239..2872421) 1 NC_017310.1 KEGG: cwo:Cwoe_0407 major facilitator superfamily MFS_1; hypothetical protein 2872421 12868403 Deval_2551 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703331.1 2872239 R 573059 CDS YP_005703332.1 387154396 12868404 complement(2872489..2873448) 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0791 hypothetical protein; hypothetical protein 2873448 12868404 Deval_2552 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703332.1 2872489 R 573059 CDS YP_005703333.1 387154397 12868405 complement(2873617..2876043) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0788 TPR repeat-containing protein; SMART: Tetratricopeptide repeat; diguanylate cyclase 2876043 12868405 Deval_2553 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005703333.1 2873617 R 573059 CDS YP_005703334.1 387154398 12868406 2876332..2876850 1 NC_017310.1 PFAM: nitroreductase; KEGG: drt:Dret_2187 nitroreductase; nitroreductase 2876850 12868406 Deval_2554 Desulfovibrio vulgaris RCH1 nitroreductase YP_005703334.1 2876332 D 573059 CDS YP_005703335.1 387154399 12868407 2876850..2877476 1 NC_017310.1 KEGG: dde:Dde_0786 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2877476 12868407 Deval_2555 Desulfovibrio vulgaris RCH1 metallo-beta-lactamase family protein YP_005703335.1 2876850 D 573059 CDS YP_005703336.1 387154400 12868408 2877564..2877731 1 NC_017310.1 hypothetical protein 2877731 12868408 Deval_2556 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703336.1 2877564 D 573059 CDS YP_005703337.1 387154401 12868409 2877728..2878342 1 NC_017310.1 KEGG: dde:Dde_0785 iron-sulfur flavoprotein, putative; iron-sulfur flavoprotein 2878342 12868409 Deval_2557 Desulfovibrio vulgaris RCH1 iron-sulfur flavoprotein YP_005703337.1 2877728 D 573059 CDS YP_005703338.1 387154402 12868410 2878434..2879330 1 NC_017310.1 PFAM: phosphoribosyltransferase; KEGG: lip:LI1111 amidophosphoribosyltransferases; phosphoribosyltransferase 2879330 12868410 Deval_2558 Desulfovibrio vulgaris RCH1 phosphoribosyltransferase YP_005703338.1 2878434 D 573059 CDS YP_005703339.1 387154403 12868411 2879753..2880535 1 NC_017310.1 PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dps:DP0758 hypothetical protein; nickel transport complex transmembrane protein NikM 2880535 12868411 Deval_2559 Desulfovibrio vulgaris RCH1 nickel transport complex transmembrane protein NikM YP_005703339.1 2879753 D 573059 CDS YP_005703340.1 387154404 12868412 2880645..2881043 1 NC_017310.1 KEGG: dde:Dde_0774 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2881043 12868412 Deval_2560 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703340.1 2880645 D 573059 CDS YP_005703341.1 387154405 12868413 2881085..2882020 1 NC_017310.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: dds:Ddes_1736 import inner membrane translocase subunit Tim44; import inner membrane translocase subunit Tim44 2882020 12868413 Deval_2561 Desulfovibrio vulgaris RCH1 import inner membrane translocase subunit Tim44 YP_005703341.1 2881085 D 573059 CDS YP_005703342.1 387154406 12868414 complement(2882280..2883602) 1 NC_017310.1 PFAM: protein of unknown function DUF111; KEGG: dde:Dde_0766 hypothetical protein; hypothetical protein 2883602 12868414 Deval_2562 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703342.1 2882280 R 573059 CDS YP_005703343.1 387154407 12868415 complement(2883841..2884707) 1 NC_017310.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dba:Dbac_2862 protein of unknown function DUF161; hypothetical protein 2884707 12868415 Deval_2563 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703343.1 2883841 R 573059 CDS YP_005703344.1 387154408 12868416 2884834..2885517 1 NC_017310.1 KEGG: dde:Dde_0765 CBS; PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; SMART: CBS domain containing protein; hypothetical protein 2885517 12868416 Deval_2564 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703344.1 2884834 D 573059 CDS YP_005703345.1 387154409 12868417 2886594..2886911 1 NC_017310.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; KEGG: dds:Ddes_1917 sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; TusE/DsrC/DsvC family sulfur relay protein 2886911 12868417 Deval_2565 Desulfovibrio vulgaris RCH1 TusE/DsrC/DsvC family sulfur relay protein YP_005703345.1 2886594 D 573059 CDS YP_005703346.1 387154410 12868418 complement(2887440..2887712) 1 NC_017310.1 KEGG: dde:Dde_0761 hypothetical protein; hypothetical protein 2887712 12868418 Deval_2566 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703346.1 2887440 R 573059 CDS YP_005703347.1 387154411 12868419 complement(2888095..2889480) 1 NC_017310.1 PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 putative ABC transporter solute-binding protein; extracellular solute-binding protein 2889480 12868419 Deval_2567 Desulfovibrio vulgaris RCH1 extracellular solute-binding protein YP_005703347.1 2888095 R 573059 CDS YP_005703348.1 387154412 12868420 complement(2889622..2890494) 1 NC_017310.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dol:Dole_2543 hypothetical protein; hypothetical protein 2890494 12868420 Deval_2568 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703348.1 2889622 R 573059 CDS YP_005703349.1 387154413 12868421 complement(2890891..2891412) 1 NC_017310.1 KEGG: cms:CMS_0580 DeoR family transcriptional regulator; hypothetical protein 2891412 12868421 Deval_2569 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703349.1 2890891 R 573059 CDS YP_005703350.1 387154414 12868422 complement(2891689..2892489) 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: drt:Dret_0158 protein of unknown function DUF81; hypothetical protein 2892489 12868422 Deval_2570 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703350.1 2891689 R 573059 CDS YP_005703351.1 387154415 12868423 complement(2892496..2893521) 1 NC_017310.1 KEGG: dde:Dde_0750 FMN-dependent family dehydrogenase; manually curated; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 2893521 12868423 Deval_2571 Desulfovibrio vulgaris RCH1 FMN-dependent alpha-hydroxy acid dehydrogenase YP_005703351.1 2892496 R 573059 CDS YP_005703352.1 387154416 12868424 complement(2893644..2894372) 1 NC_017310.1 KEGG: dde:Dde_0749 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH; GntR family transcriptional regulator 2894372 12868424 Deval_2572 Desulfovibrio vulgaris RCH1 GntR family transcriptional regulator YP_005703352.1 2893644 R 573059 CDS YP_005703353.1 387154417 12868425 complement(2894613..2895071) 1 NC_017310.1 KEGG: dde:Dde_0748 hypothetical protein; hypothetical protein 2895071 12868425 Deval_2573 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703353.1 2894613 R 573059 CDS YP_005703354.1 387154418 12868426 complement(2895089..2895451) 1 NC_017310.1 KEGG: dde:Dde_0747 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 2895451 12868426 Deval_2574 Desulfovibrio vulgaris RCH1 ArsR family transcriptional regulator YP_005703354.1 2895089 R 573059 CDS YP_005703355.1 387154419 12868427 2895860..2896411 1 NC_017310.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: dde:Dde_0237 Gpr1/Fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 2896411 12868427 Deval_2575 Desulfovibrio vulgaris RCH1 GPR1/FUN34/yaaH family protein YP_005703355.1 2895860 D 573059 CDS YP_005703356.1 387154420 12868428 2896984..2897763 1 NC_017310.1 KEGG: dde:Dde_0580 cytochrome c family protein; cytochrome c family protein 2897763 12868428 Deval_2576 Desulfovibrio vulgaris RCH1 cytochrome c family protein YP_005703356.1 2896984 D 573059 CDS YP_005703357.1 387154421 12868429 2897777..2898982 1 NC_017310.1 KEGG: dds:Ddes_1238 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; respiratory-chain NADH dehydrogenase domain 51 kDa subunit 2898982 12868429 Deval_2577 Desulfovibrio vulgaris RCH1 respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_005703357.1 2897777 D 573059 CDS YP_005703358.1 387154422 12868430 2899120..2900076 1 NC_017310.1 KEGG: dds:Ddes_1239 NQR2 and RnfD family protein; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; RnfABCDGE type electron transport complex subunit D 2900076 12868430 Deval_2578 Desulfovibrio vulgaris RCH1 RnfABCDGE type electron transport complex subunit D YP_005703358.1 2899120 D 573059 CDS YP_005703359.1 387154423 12868431 2900079..2900654 1 NC_017310.1 PFAM: FMN-binding domain protein; KEGG: dds:Ddes_1240 FMN-binding domain protein; FMN-binding domain-containing protein 2900654 12868431 Deval_2579 Desulfovibrio vulgaris RCH1 FMN-binding domain-containing protein YP_005703359.1 2900079 D 573059 CDS YP_005703360.1 387154424 12868432 2900666..2901337 1 NC_017310.1 KEGG: dde:Dde_0584 electron transport complex RsxE subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; RnfABCDGE type electron transport complex subunit E 2901337 12868432 Deval_2580 Desulfovibrio vulgaris RCH1 RnfABCDGE type electron transport complex subunit E YP_005703360.1 2900666 D 573059 CDS YP_005703361.1 387154425 12868433 2901347..2901922 1 NC_017310.1 KEGG: dds:Ddes_1242 electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; RnfABCDGE type electron transport complex subunit A 2901922 12868433 Deval_2581 Desulfovibrio vulgaris RCH1 RnfABCDGE type electron transport complex subunit A YP_005703361.1 2901347 D 573059 CDS YP_005703362.1 387154426 12868434 2901992..2902879 1 NC_017310.1 KEGG: dds:Ddes_1243 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; RnfABCDGE type electron transport complex subunit B 2902879 12868434 Deval_2582 Desulfovibrio vulgaris RCH1 RnfABCDGE type electron transport complex subunit B YP_005703362.1 2901992 D 573059 CDS YP_005703363.1 387154427 12868435 2902876..2903886 1 NC_017310.1 PFAM: ApbE family lipoprotein; KEGG: dde:Dde_0587 hypotehtical protein; ApbE family lipoprotein 2903886 12868435 Deval_2583 Desulfovibrio vulgaris RCH1 ApbE family lipoprotein YP_005703363.1 2902876 D 573059 CDS YP_005703364.1 387154428 12868436 complement(2903981..2904397) 1 NC_017310.1 KEGG: dma:DMR_28770 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 2904397 12868436 Deval_2584 Desulfovibrio vulgaris RCH1 MarR family transcriptional regulator YP_005703364.1 2903981 R 573059 CDS YP_005703365.1 387154429 12868437 complement(2904405..2906306) 1 NC_017310.1 KEGG: dma:DMR_28780 putative cation translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating P-type ATPase 2906306 12868437 Deval_2585 Desulfovibrio vulgaris RCH1 heavy metal translocating P-type ATPase YP_005703365.1 2904405 R 573059 CDS YP_005703366.1 387154430 12868438 2906558..2907823 1 NC_017310.1 PFAM: PAS fold-3 domain protein; KEGG: dde:Dde_1612 hypothetical protein; PAS fold-3 domain-containing protein 2907823 12868438 Deval_2586 Desulfovibrio vulgaris RCH1 PAS fold-3 domain-containing protein YP_005703366.1 2906558 D 573059 CDS YP_005703367.1 387154431 12868439 2908071..2908766 1 NC_017310.1 KEGG: dde:Dde_1614 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; regulatory protein GntR HTH 2908766 12868439 Deval_2587 Desulfovibrio vulgaris RCH1 regulatory protein GntR HTH YP_005703367.1 2908071 D 573059 CDS YP_005703368.1 387154432 12868440 2908756..2908977 1 NC_017310.1 KEGG: dsa:Desal_0358 hypothetical protein; hypothetical protein 2908977 12868440 Deval_2588 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703368.1 2908756 D 573059 CDS YP_005703369.1 387154433 12868441 2909046..2910455 1 NC_017310.1 KEGG: dde:Dde_1615 hypothetical protein; hypothetical protein 2910455 12868441 Deval_2589 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703369.1 2909046 D 573059 CDS YP_005703370.1 387154434 12868442 2910472..2911629 1 NC_017310.1 KEGG: dde:Dde_1616 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2911629 12868442 Deval_2590 Desulfovibrio vulgaris RCH1 metallo-beta-lactamase family protein YP_005703370.1 2910472 D 573059 CDS YP_005703371.1 387154435 12868443 2911676..2913622 1 NC_017310.1 KEGG: dde:Dde_1617 G3E family GTPase-like protein; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SMART: cobalamin synthesis CobW domain protein; cobalamin synthesis protein P47K 2913622 12868443 Deval_2591 Desulfovibrio vulgaris RCH1 cobalamin synthesis protein P47K YP_005703371.1 2911676 D 573059 CDS YP_005703372.1 387154436 12868444 2913609..2914358 1 NC_017310.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: drt:Dret_0916 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2914358 12868444 Deval_2592 Desulfovibrio vulgaris RCH1 MotA/TolQ/ExbB proton channel YP_005703372.1 2913609 D 573059 CDS YP_005703373.1 387154437 12868445 2914342..2914788 1 NC_017310.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: drt:Dret_0915 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2914788 12868445 Deval_2593 Desulfovibrio vulgaris RCH1 biopolymer transport protein ExbD/TolR YP_005703373.1 2914342 D 573059 CDS YP_005703374.1 387154438 12868446 2914785..2915294 1 NC_017310.1 TIGRFAM: TonB family protein; KEGG: dsa:Desal_0352 TonB family protein; TonB family protein 2915294 12868446 Deval_2594 Desulfovibrio vulgaris RCH1 TonB family protein YP_005703374.1 2914785 D 573059 CDS YP_005703375.1 387154439 12868447 complement(2915505..2915939) 1 NC_017310.1 PFAM: Cytochrome c, class III, conserved region; KEGG: dds:Ddes_0558 cytochrome c class III; cytochrome c, class III, conserved region 2915939 12868447 Deval_2595 Desulfovibrio vulgaris RCH1 cytochrome c, class III, conserved region YP_005703375.1 2915505 R 573059 CDS YP_005703376.1 387154440 12868448 complement(2915954..2916901) 1 NC_017310.1 KEGG: dds:Ddes_0557 formate dehydrogenase accessory protein; formate dehydrogenase accessory protein 2916901 12868448 Deval_2596 Desulfovibrio vulgaris RCH1 formate dehydrogenase accessory protein YP_005703376.1 2915954 R 573059 CDS YP_005703377.1 387154441 12868449 complement(2916975..2917634) 1 NC_017310.1 KEGG: dds:Ddes_0556 formate dehydrogenase, beta subunit, putative; formate dehydrogenase subunit beta 2917634 12868449 Deval_2597 Desulfovibrio vulgaris RCH1 formate dehydrogenase subunit beta YP_005703377.1 2916975 R 573059 CDS YP_005703378.1 387154442 12868450 complement(2917686..2920724) 1 NC_017310.1 manually curated; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; manually curated; Contains selenocysteine; KEGG: dds:Ddes_0555 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 2920724 12868450 Deval_2598 Desulfovibrio vulgaris RCH1 formate dehydrogenase subunit alpha YP_005703378.1 2917686 R 573059 CDS YP_005703379.1 387154443 12868451 complement(2921517..2923145) 1 NC_017310.1 KEGG: gur:Gura_3497 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2923145 12868451 Deval_2599 Desulfovibrio vulgaris RCH1 NodT family RND efflux system outer membrane lipoprotein YP_005703379.1 2921517 R 573059 CDS YP_005703380.1 387154444 12868452 complement(2923142..2926354) 1 NC_017310.1 KEGG: ccs:CCNA_00850 cation/multidrug efflux pump acrB2; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2926354 12868452 Deval_2600 Desulfovibrio vulgaris RCH1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_005703380.1 2923142 R 573059 CDS YP_005703381.1 387154445 12868453 complement(2926370..2927623) 1 NC_017310.1 KEGG: azo:azo0244 membrane fusion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2927623 12868453 Deval_2601 Desulfovibrio vulgaris RCH1 RND family efflux transporter MFP subunit YP_005703381.1 2926370 R 573059 CDS YP_005703382.1 387154446 12868454 2928080..2928688 1 NC_017310.1 PFAM: regulatory protein TetR; KEGG: sjp:SJA_P1-01580 TetR-family transcriptional regulator; regulatory protein TetR 2928688 12868454 Deval_2602 Desulfovibrio vulgaris RCH1 regulatory protein TetR YP_005703382.1 2928080 D 573059 CDS YP_005703383.1 387154447 12868455 complement(2928876..2929712) 1 NC_017310.1 PFAM: amidohydrolase 2; KEGG: dde:Dde_1278 amidohydrolase family protein; amidohydrolase 2 2929712 12868455 Deval_2603 Desulfovibrio vulgaris RCH1 amidohydrolase 2 YP_005703383.1 2928876 R 573059 CDS YP_005703384.1 387154448 12868456 2930398..2931408 1 NC_017310.1 KEGG: dde:Dde_1275 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP 2931408 12868456 Deval_2604 Desulfovibrio vulgaris RCH1 TRAP dicarboxylate transporter subunit DctP YP_005703384.1 2930398 D 573059 CDS YP_005703385.1 387154449 12868457 2931489..2933393 1 NC_017310.1 KEGG: dde:Dde_1274 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; TRAP dicarboxylate transporter subunit DctM 2933393 12868457 Deval_2605 Desulfovibrio vulgaris RCH1 TRAP dicarboxylate transporter subunit DctM YP_005703385.1 2931489 D 573059 CDS YP_005703386.1 387154450 12868458 2933499..2935985 1 NC_017310.1 PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dde:Dde_1273 formate C-acetyltransferase; pyruvate formate-lyase PFL 2935985 12868458 Deval_2606 Desulfovibrio vulgaris RCH1 pyruvate formate-lyase PFL YP_005703386.1 2933499 D 573059 CDS YP_005703387.1 387154451 12868459 2936162..2937085 1 NC_017310.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: dde:Dde_1272 radical-activating enzyme; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family 2937085 12868459 Deval_2607 Desulfovibrio vulgaris RCH1 glycyl-radical enzyme activating protein family YP_005703387.1 2936162 D 573059 CDS YP_005703388.1 387154452 12868460 2937525..2938946 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_1270 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 2938946 12868460 Deval_2608 Desulfovibrio vulgaris RCH1 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_005703388.1 2937525 D 573059 CDS YP_005703389.1 387154453 12868461 2939415..2940788 1 NC_017310.1 PFAM: integrase family protein; KEGG: dma:DMR_24670 site-specific recombinase; integrase family protein 2940788 12868461 Deval_2609 Desulfovibrio vulgaris RCH1 integrase family protein YP_005703389.1 2939415 D 573059 CDS YP_005703390.1 387154454 12868462 complement(2940790..2941032) 1 NC_017310.1 KEGG: sfu:Sfum_2425 hypothetical protein; hypothetical protein 2941032 12868462 Deval_2610 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703390.1 2940790 R 573059 CDS YP_005703391.1 387154455 12868463 complement(2941097..2941462) 1 NC_017310.1 KEGG: drt:Dret_0360 death-on-curing family protein; hypothetical protein 2941462 12868463 Deval_2611 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703391.1 2941097 R 573059 CDS YP_005703392.1 387154456 12868464 complement(2941547..2941759) 1 NC_017310.1 KEGG: hypothetical protein; hypothetical protein 2941759 12868464 Deval_2612 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703392.1 2941547 R 573059 CDS YP_005703393.1 387154457 12868465 complement(2941845..2942039) 1 NC_017310.1 hypothetical protein 2942039 12868465 Deval_2613 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703393.1 2941845 R 573059 CDS YP_005703394.1 387154458 12868466 complement(2942026..2942487) 1 NC_017310.1 KEGG: dsa:Desal_1649 transcriptional regulator CII, putative; transcriptional regulator CII, putative 2942487 12868466 Deval_2614 Desulfovibrio vulgaris RCH1 transcriptional regulator CII, putative YP_005703394.1 2942026 R 573059 CDS YP_005703395.1 387154459 12868467 2942645..2942974 1 NC_017310.1 KEGG: cfa:403809 ribosome binding protein 1 homolog 180kDa (dog); hypothetical protein 2942974 12868467 Deval_2615 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703395.1 2942645 D 573059 CDS YP_005703396.1 387154460 12868468 complement(2942964..2943302) 1 NC_017310.1 KEGG: ccs:CCNA_03084 hypothetical protein; hypothetical protein 2943302 12868468 Deval_2616 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703396.1 2942964 R 573059 CDS YP_005703397.1 387154461 12868469 complement(2943372..2943644) 1 NC_017310.1 SMART: helix-turn-helix domain protein; KEGG: dma:DMR_24900 hypothetical protein; helix-turn-helix domain-containing protein 2943644 12868469 Deval_2617 Desulfovibrio vulgaris RCH1 helix-turn-helix domain-containing protein YP_005703397.1 2943372 R 573059 CDS YP_005703398.1 387154462 12868470 2943762..2944187 1 NC_017310.1 KEGG: bqu:BQ09040 hypothetical protein; hypothetical protein 2944187 12868470 Deval_2618 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703398.1 2943762 D 573059 CDS YP_005703399.1 387154463 12868471 2944300..2945373 1 NC_017310.1 PFAM: protein of unknown function DUF450; KEGG: dsa:Desal_2153 protein of unknown function DUF450; hypothetical protein 2945373 12868471 Deval_2619 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703399.1 2944300 D 573059 CDS YP_005703400.1 387154464 12868472 2945445..2946782 1 NC_017310.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: metal dependent phosphohydrolase; metal dependent phosphohydrolase 2946782 12868472 Deval_2620 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005703400.1 2945445 D 573059 CDS YP_005703401.1 387154465 12868473 2946783..2947307 1 NC_017310.1 KEGG: geo:Geob_0580 hypothetical protein; hypothetical protein 2947307 12868473 Deval_2621 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703401.1 2946783 D 573059 CDS YP_005703402.1 387154466 12868474 complement(2947416..2948117) 1 NC_017310.1 KEGG: vcj:VCD_000855 hypothetical protein; hypothetical protein 2948117 12868474 Deval_2622 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703402.1 2947416 R 573059 CDS YP_005703403.1 387154467 12868475 complement(2948117..2949316) 1 NC_017310.1 KEGG: rsh:Rsph17029_3386 type II restriction endonuclease, putative; PFAM: Restriction endonuclease EcoRII; type II site-specific deoxyribonuclease 2949316 12868475 Deval_2623 Desulfovibrio vulgaris RCH1 type II site-specific deoxyribonuclease YP_005703403.1 2948117 R 573059 CDS YP_005703404.1 387154468 12868476 2949456..2950532 1 NC_017310.1 PFAM: C-5 cytosine-specific DNA methylase; manually curated; KEGG: mmr:Mmar10_3057 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 2950532 12868476 Deval_2624 Desulfovibrio vulgaris RCH1 DNA-cytosine methyltransferase YP_005703404.1 2949456 D 573059 CDS YP_005703405.1 387154469 12868477 2950968..2951831 1 NC_017310.1 KEGG: sma:SAV_2155 3-hydroxyacyl-CoA dehydrogenase; hypothetical protein 2951831 12868477 Deval_2625 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703405.1 2950968 D 573059 CDS YP_005703406.1 387154470 12868478 2951839..2952267 1 NC_017310.1 PFAM: histidine triad (HIT) protein; KEGG: pca:Pcar_0296 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad (HIT) protein 2952267 12868478 Deval_2626 Desulfovibrio vulgaris RCH1 histidine triad (HIT) protein YP_005703406.1 2951839 D 573059 CDS YP_005703407.1 387154471 12868479 complement(2952573..2952902) 1 NC_017310.1 manually curated; KEGG: dma:DMR_24910 hypothetical protein; hypothetical protein 2952902 12868479 Deval_2627 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703407.1 2952573 R 573059 CDS YP_005703408.1 387154472 12868480 complement(2952914..2953453) 1 NC_017310.1 KEGG: dds:Ddes_0258 hypothetical protein; hypothetical protein 2953453 12868480 Deval_2628 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703408.1 2952914 R 573059 CDS YP_005703409.1 387154473 12868481 complement(2953463..2954278) 1 NC_017310.1 KEGG: pfl:PFL_1226 tail fibre protein, putative; tail fiber protein 2954278 12868481 Deval_2629 Desulfovibrio vulgaris RCH1 tail fiber protein YP_005703409.1 2953463 R 573059 CDS YP_005703410.1 387154474 12868482 complement(2954271..2954897) 1 NC_017310.1 KEGG: bph:Bphy_1869 hypothetical protein; hypothetical protein 2954897 12868482 Deval_2630 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703410.1 2954271 R 573059 CDS YP_005703411.1 387154475 12868483 complement(2954906..2955967) 1 NC_017310.1 PFAM: Baseplate J family protein; KEGG: pol:Bpro_3733 baseplate J-like protein; baseplate J family protein 2955967 12868483 Deval_2631 Desulfovibrio vulgaris RCH1 baseplate J family protein YP_005703411.1 2954906 R 573059 CDS YP_005703412.1 387154476 12868484 complement(2955976..2956452) 1 NC_017310.1 PFAM: GP46 family protein; KEGG: xbo:XBJ1_2641 Mu-like prophage FluMu protein; GP46 family protein 2956452 12868484 Deval_2632 Desulfovibrio vulgaris RCH1 GP46 family protein YP_005703412.1 2955976 R 573059 CDS YP_005703413.1 387154477 12868485 complement(2956454..2957092) 1 NC_017310.1 KEGG: pen:PSEEN4139 Mu-like phage assembly protein GP45; TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; phage baseplate assembly protein V 2957092 12868485 Deval_2633 Desulfovibrio vulgaris RCH1 phage baseplate assembly protein V YP_005703413.1 2956454 R 573059 CDS YP_005703414.1 387154478 12868486 complement(2957094..2958227) 1 NC_017310.1 KEGG: pca:Pcar_1817 Mu-like prophage tail protein gpP; Mu-like prophage tail protein gpP 2958227 12868486 Deval_2634 Desulfovibrio vulgaris RCH1 Mu-like prophage tail protein gpP YP_005703414.1 2957094 R 573059 CDS YP_005703415.1 387154479 12868487 complement(2958220..2958357) 1 NC_017310.1 hypothetical protein 2958357 12868487 Deval_2635 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703415.1 2958220 R 573059 CDS YP_005703416.1 387154480 12868488 complement(2958350..2959549) 1 NC_017310.1 PFAM: DNA circulation family protein; KEGG: pol:Bpro_3737 DNA circulation-like; DNA circulation family protein 2959549 12868488 Deval_2636 Desulfovibrio vulgaris RCH1 DNA circulation family protein YP_005703416.1 2958350 R 573059 CDS YP_005703417.1 387154481 12868489 complement(2959558..2961132) 1 NC_017310.1 KEGG: nis:NIS_0476 hypothetical protein; hypothetical protein 2961132 12868489 Deval_2637 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703417.1 2959558 R 573059 CDS YP_005703418.1 387154482 12868490 complement(2961248..2961508) 1 NC_017310.1 KEGG: bpt:Bpet4420 hypothetical protein; hypothetical protein 2961508 12868490 Deval_2638 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703418.1 2961248 R 573059 CDS YP_005703419.1 387154483 12868491 complement(2961508..2961873) 1 NC_017310.1 PFAM: Tail tube protein, bacteriophage; KEGG: bph:Bphy_1877 hypothetical protein; Tail tube protein, bacteriophage 2961873 12868491 Deval_2639 Desulfovibrio vulgaris RCH1 Tail tube protein, bacteriophage YP_005703419.1 2961508 R 573059 CDS YP_005703420.1 387154484 12868492 complement(2961923..2963386) 1 NC_017310.1 KEGG: pol:Bpro_3741 bacteriophage Mu tail sheath; bacteriophage Mu tail sheath 2963386 12868492 Deval_2640 Desulfovibrio vulgaris RCH1 bacteriophage Mu tail sheath YP_005703420.1 2961923 R 573059 CDS YP_005703421.1 387154485 12868493 complement(2963390..2963581) 1 NC_017310.1 KEGG: ecy:ECSE_2580 hypothetical protein; hypothetical protein 2963581 12868493 Deval_2641 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703421.1 2963390 R 573059 CDS YP_005703422.1 387154486 12868494 complement(2963565..2964122) 1 NC_017310.1 KEGG: ank:AnaeK_3110 hypothetical protein; hypothetical protein 2964122 12868494 Deval_2642 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703422.1 2963565 R 573059 CDS YP_005703423.1 387154487 12868495 complement(2964119..2964445) 1 NC_017310.1 KEGG: met:M446_3276 molybdenum cofactor synthesis domain-containing protein; hypothetical protein 2964445 12868495 Deval_2643 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703423.1 2964119 R 573059 CDS YP_005703424.1 387154488 12868496 complement(2964442..2965035) 1 NC_017310.1 KEGG: drm:Dred_1209 hypothetical protein; hypothetical protein 2965035 12868496 Deval_2644 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703424.1 2964442 R 573059 CDS YP_005703425.1 387154489 12868497 complement(2965038..2965205) 1 NC_017310.1 hypothetical protein 2965205 12868497 Deval_2645 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703425.1 2965038 R 573059 CDS YP_005703426.1 387154490 12868498 complement(2965198..2965608) 1 NC_017310.1 KEGG: hba:Hbal_0455 hypothetical protein; hypothetical protein 2965608 12868498 Deval_2646 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703426.1 2965198 R 573059 CDS YP_005703427.1 387154491 12868499 complement(2965626..2966195) 1 NC_017310.1 PFAM: protein of unknown function DUF847; Peptidoglycan binding domain; KEGG: dds:Ddes_0723 protein of unknown function DUF847; hypothetical protein 2966195 12868499 Deval_2647 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703427.1 2965626 R 573059 CDS YP_005703428.1 387154492 12868500 complement(2966195..2966683) 1 NC_017310.1 KEGG: dma:DMR_25100 hypothetical membrane protein; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; toxin secretion/phage lysis holin 2966683 12868500 Deval_2648 Desulfovibrio vulgaris RCH1 toxin secretion/phage lysis holin YP_005703428.1 2966195 R 573059 CDS YP_005703429.1 387154493 12868501 complement(2966686..2967033) 1 NC_017310.1 KEGG: spu:581224 similar to mp86; hypothetical protein 2967033 12868501 Deval_2649 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703429.1 2966686 R 573059 CDS YP_005703430.1 387154494 12868502 complement(2967042..2968046) 1 NC_017310.1 KEGG: lhk:LHK_01651 putative capsid protein of prophage; hypothetical protein 2968046 12868502 Deval_2650 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703430.1 2967042 R 573059 CDS YP_005703431.1 387154495 12868503 complement(2968058..2968441) 1 NC_017310.1 KEGG: xal:XALc_0211 hypothetical phage-related protein; hypothetical protein 2968441 12868503 Deval_2651 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703431.1 2968058 R 573059 CDS YP_005703432.1 387154496 12868504 complement(2968451..2969770) 1 NC_017310.1 PFAM: peptidase S49; KEGG: lhk:LHK_01653 periplasmic serine proteases (ClpP class); peptidase S49 2969770 12868504 Deval_2652 Desulfovibrio vulgaris RCH1 peptidase S49 YP_005703432.1 2968451 R 573059 CDS YP_005703433.1 387154497 12868505 complement(2969754..2971454) 1 NC_017310.1 KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family 2971454 12868505 Deval_2653 Desulfovibrio vulgaris RCH1 phage portal protein, lambda family YP_005703433.1 2969754 R 573059 CDS YP_005703434.1 387154498 12868506 complement(2971458..2971733) 1 NC_017310.1 KEGG: cbt:CLH_1728 hypothetical protein; hypothetical protein 2971733 12868506 Deval_2654 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703434.1 2971458 R 573059 CDS YP_005703435.1 387154499 12868507 complement(2971960..2972388) 1 NC_017310.1 KEGG: dma:DMR_14730 hypothetical protein; hypothetical protein 2972388 12868507 Deval_2655 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703435.1 2971960 R 573059 CDS YP_005703436.1 387154500 12868508 complement(2972381..2972599) 1 NC_017310.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: aoe:Clos_0602 DNA binding domain-containing protein; excisionase family DNA binding domain-containing protein 2972599 12868508 Deval_2656 Desulfovibrio vulgaris RCH1 excisionase family DNA binding domain-containing protein YP_005703436.1 2972381 R 573059 CDS YP_005703437.1 387154501 12868509 complement(2972596..2974608) 1 NC_017310.1 PFAM: terminase GpA; KEGG: dsa:Desal_2143 terminase GpA; terminase GpA 2974608 12868509 Deval_2657 Desulfovibrio vulgaris RCH1 terminase GpA YP_005703437.1 2972596 R 573059 CDS YP_005703438.1 387154502 12868510 complement(2974574..2975296) 1 NC_017310.1 KEGG: dps:DP1575 hypothetical protein; hypothetical protein 2975296 12868510 Deval_2658 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703438.1 2974574 R 573059 CDS YP_005703439.1 387154503 12868511 complement(2975289..2976647) 1 NC_017310.1 KEGG: rsh:Rsph17029_0653 nuclease; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; DNA methylase N-4/N-6 domain-containing protein 2976647 12868511 Deval_2659 Desulfovibrio vulgaris RCH1 DNA methylase N-4/N-6 domain-containing protein YP_005703439.1 2975289 R 573059 CDS YP_005703440.1 387154504 12868512 complement(2976774..2978330) 1 NC_017310.1 KEGG: dal:Dalk_0267 P4 alpha zinc-binding domain protein; PFAM: P4 alpha zinc-binding domain protein; DNA primase catalytic core domain; SMART: P4 alpha zinc-binding domain protein; P4 alpha zinc-binding domain-containing protein 2978330 12868512 Deval_2660 Desulfovibrio vulgaris RCH1 P4 alpha zinc-binding domain-containing protein YP_005703440.1 2976774 R 573059 CDS YP_005703441.1 387154505 12868513 complement(2978597..2980282) 1 NC_017310.1 KEGG: dma:DMR_41960 hypothetical protein; TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; phage/plasmid primase, P4 family 2980282 12868513 Deval_2661 Desulfovibrio vulgaris RCH1 phage/plasmid primase, P4 family YP_005703441.1 2978597 R 573059 CDS YP_005703442.1 387154506 12868515 2981351..2982847 1 NC_017310.1 KEGG: dde:Dde_3058 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2982847 12868515 Deval_2662 Desulfovibrio vulgaris RCH1 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_005703442.1 2981351 D 573059 CDS YP_005703443.1 387154507 12868516 2982959..2984428 1 NC_017310.1 TIGRFAM: L-seryl-tRNA selenium transferase; KEGG: dde:Dde_3059 selenocysteine synthase; PFAM: Pyridoxal phosphate-dependent transferase; L-seryl-tRNA selenium transferase 2984428 12868516 Deval_2663 Desulfovibrio vulgaris RCH1 L-seryl-tRNA selenium transferase YP_005703443.1 2982959 D 573059 CDS YP_005703444.1 387154508 12868517 2984487..2985890 1 NC_017310.1 PFAM: peptidase M18 aminopeptidase I; KEGG: dde:Dde_3061 putative aminopeptidase 1; peptidase M18 aminopeptidase I 2985890 12868517 Deval_2664 Desulfovibrio vulgaris RCH1 peptidase M18 aminopeptidase I YP_005703444.1 2984487 D 573059 CDS YP_005703445.1 387154509 12868518 2986061..2987254 1 NC_017310.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3062 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 2987254 12868518 Deval_2665 Desulfovibrio vulgaris RCH1 iron-containing alcohol dehydrogenase YP_005703445.1 2986061 D 573059 CDS YP_005703446.1 387154510 12868519 2987361..2988200 1 NC_017310.1 KEGG: dsa:Desal_3271 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2988200 12868519 Deval_2666 Desulfovibrio vulgaris RCH1 AraC family transcriptional regulator YP_005703446.1 2987361 D 573059 CDS YP_005703447.1 387154511 12868520 2988451..2989419 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dsa:Desal_3273 protein of unknown function DUF6 transmembrane; hypothetical protein 2989419 12868520 Deval_2667 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703447.1 2988451 D 573059 CDS YP_005703448.1 387154512 12868521 complement(2989601..2990428) 1 NC_017310.1 KEGG: dde:Dde_2953 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 2990428 12868521 Deval_2668 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703448.1 2989601 R 573059 CDS YP_005703449.1 387154513 12868522 complement(2990425..2990973) 1 NC_017310.1 PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein; BioY protein 2990973 12868522 Deval_2669 Desulfovibrio vulgaris RCH1 BioY protein YP_005703449.1 2990425 R 573059 CDS YP_005703450.1 387154514 12868523 2990992..2991870 1 NC_017310.1 KEGG: dde:Dde_2955 hypothetical protein; hypothetical protein 2991870 12868523 Deval_2670 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703450.1 2990992 D 573059 CDS YP_005703451.1 387154515 12868524 2991889..2992308 1 NC_017310.1 PFAM: NikR nickel binding; KEGG: dde:Dde_2956 nickel responsive regulator; CopG family transcriptional regulator 2992308 12868524 Deval_2671 Desulfovibrio vulgaris RCH1 CopG family transcriptional regulator YP_005703451.1 2991889 D 573059 CDS YP_005703452.1 387154516 12868525 2992313..2993113 1 NC_017310.1 KEGG: dde:Dde_2957 putative GTP cyclohydrolase; PFAM: protein of unknown function DUF198; GTP cyclohydrolase I 2993113 12868525 Deval_2672 Desulfovibrio vulgaris RCH1 GTP cyclohydrolase I YP_005703452.1 2992313 D 573059 CDS YP_005703453.1 387154517 12868526 2993161..2993538 1 NC_017310.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dma:DMR_31700 putative flagellar basal-body rod protein; hypothetical protein 2993538 12868526 Deval_2673 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703453.1 2993161 D 573059 CDS YP_005703454.1 387154518 12868527 2993816..2994865 1 NC_017310.1 KEGG: dde:Dde_2959 Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; Fis family sigma-54 specific transcriptional regulator 2994865 12868527 Deval_2674 Desulfovibrio vulgaris RCH1 Fis family sigma-54 specific transcriptional regulator YP_005703454.1 2993816 D 573059 CDS YP_005703455.1 387154519 12868528 2995195..2998407 1 NC_017310.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_2960 TPR repeat-containing protein; hypothetical protein 2998407 12868528 Deval_2675 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703455.1 2995195 D 573059 CDS YP_005703456.1 387154520 12868529 2998750..2999739 1 NC_017310.1 PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein; hypothetical protein 2999739 12868529 Deval_2676 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703456.1 2998750 D 573059 CDS YP_005703457.1 387154521 12868530 2999870..3000871 1 NC_017310.1 KEGG: mma:MM_1125 hypothetical protein; hypothetical protein 3000871 12868530 Deval_2677 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703457.1 2999870 D 573059 CDS YP_005703458.1 387154522 12868531 complement(3001256..3002098) 1 NC_017310.1 KEGG: dde:Dde_2962 hypothetical protein; hypothetical protein 3002098 12868531 Deval_2678 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703458.1 3001256 R 573059 CDS YP_005703459.1 387154523 12868532 3002314..3003513 1 NC_017310.1 PFAM: amidohydrolase; KEGG: dde:Dde_2963 amidohydrolase family protein; amidohydrolase 3003513 12868532 Deval_2679 Desulfovibrio vulgaris RCH1 amidohydrolase YP_005703459.1 3002314 D 573059 CDS YP_005703460.1 387154524 12868533 3003527..3004480 1 NC_017310.1 TIGRFAM: aspartate carbamoyltransferase; KEGG: dds:Ddes_1871 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase 3004480 12868533 Deval_2680 Desulfovibrio vulgaris RCH1 aspartate carbamoyltransferase YP_005703460.1 3003527 D 573059 CDS YP_005703461.1 387154525 12868534 3004480..3005748 1 NC_017310.1 KEGG: dde:Dde_2965 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type 3005748 12868534 Deval_2681 Desulfovibrio vulgaris RCH1 dihydroorotase, multifunctional complex type YP_005703461.1 3004480 D 573059 CDS YP_005703462.1 387154526 12868535 3006066..3007394 1 NC_017310.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein; metal dependent phosphohydrolase 3007394 12868535 Deval_2682 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005703462.1 3006066 D 573059 CDS YP_005703463.1 387154527 12868536 3007868..3008962 1 NC_017310.1 KEGG: dds:Ddes_0445 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical SAM enzyme, Cfr family 3008962 12868536 Deval_2683 Desulfovibrio vulgaris RCH1 radical SAM enzyme, Cfr family YP_005703463.1 3007868 D 573059 CDS YP_005703464.1 387154528 12868537 complement(3009256..3010434) 1 NC_017310.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 3010434 12868537 Deval_2684 Desulfovibrio vulgaris RCH1 iron-containing alcohol dehydrogenase YP_005703464.1 3009256 R 573059 CDS YP_005703465.1 387154529 12868538 complement(3010713..3012200) 1 NC_017310.1 KEGG: dma:DMR_28930 UmuC protein; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 3012200 12868538 Deval_2685 Desulfovibrio vulgaris RCH1 DNA-directed DNA polymerase YP_005703465.1 3010713 R 573059 CDS YP_005703466.1 387154530 12868539 complement(3012311..3012916) 1 NC_017310.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: syw:SYNW1044 putative SOS mutagenesis protein UmuD; Peptidase S24/S26A/S26B 3012916 12868539 Deval_2686 Desulfovibrio vulgaris RCH1 Peptidase S24/S26A/S26B YP_005703466.1 3012311 R 573059 CDS YP_005703467.1 387154531 12868540 3013100..3013852 1 NC_017310.1 KEGG: dde:Dde_2975 hypothetical protein; hypothetical protein 3013852 12868540 Deval_2687 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703467.1 3013100 D 573059 CDS YP_005703468.1 387154532 12868541 3013956..3014369 1 NC_017310.1 KEGG: dsa:Desal_3516 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 3014369 12868541 Deval_2688 Desulfovibrio vulgaris RCH1 MarR family transcriptional regulator YP_005703468.1 3013956 D 573059 CDS YP_005703469.1 387154533 12868542 3014382..3014987 1 NC_017310.1 PFAM: protein of unknown function DUF204; KEGG: dde:Dde_2978 hypothetical protein; hypothetical protein 3014987 12868542 Deval_2689 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703469.1 3014382 D 573059 CDS YP_005703470.1 387154534 12868543 complement(3015188..3015949) 1 NC_017310.1 KEGG: dde:Dde_2981 hemolysin A; TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; hemolysin A 3015949 12868543 Deval_2690 Desulfovibrio vulgaris RCH1 hemolysin A YP_005703470.1 3015188 R 573059 CDS YP_005703471.1 387154535 12868544 3016151..3016366 1 NC_017310.1 KEGG: dde:Dde_2982 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; 50S ribosomal protein L31 3016366 12868544 Deval_2691 Desulfovibrio vulgaris RCH1 50S ribosomal protein L31 YP_005703471.1 3016151 D 573059 CDS YP_005703472.1 387154536 12868545 3016481..3017488 1 NC_017310.1 KEGG: dde:Dde_2983 putative lipoprotein; manually curated; PFAM: protein of unknown function DUF1385; hypothetical protein 3017488 12868545 Deval_2692 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703472.1 3016481 D 573059 CDS YP_005703473.1 387154537 12868546 3017495..3018568 1 NC_017310.1 KEGG: dde:Dde_2984 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 1 3018568 12868546 Deval_2693 Desulfovibrio vulgaris RCH1 peptide chain release factor 1 YP_005703473.1 3017495 D 573059 CDS YP_005703474.1 387154538 12868547 3019268..3020155 1 NC_017310.1 KEGG: dde:Dde_2985 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase 3020155 12868547 Deval_2694 Desulfovibrio vulgaris RCH1 protein-(glutamine-N5) methyltransferase YP_005703474.1 3019268 D 573059 CDS YP_005703475.1 387154539 12868548 3020363..3021289 1 NC_017310.1 KEGG: dde:Dde_2986 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 3021289 12868548 Deval_2695 Desulfovibrio vulgaris RCH1 UDP-3-0-acyl N-acetylglucosamine deacetylase YP_005703475.1 3020363 D 573059 CDS YP_005703476.1 387154540 12868553 3022637..3023830 1 NC_017310.1 KEGG: dde:Dde_2989 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; translation elongation factor Tu 3023830 12868553 Deval_2696 Desulfovibrio vulgaris RCH1 translation elongation factor Tu YP_005703476.1 3022637 D 573059 CDS YP_005703477.1 387154541 12868554 3023835..3023984 1 NC_017310.1 KEGG: dds:Ddes_1629 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; 50S ribosomal protein L33 3023984 12868554 Deval_2697 Desulfovibrio vulgaris RCH1 50S ribosomal protein L33 YP_005703477.1 3023835 D 573059 CDS YP_005703478.1 387154542 12868556 3024110..3024361 1 NC_017310.1 KEGG: dde:Dde_2990 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; Preprotein translocase subunit SecE 3024361 12868556 Deval_2698 Desulfovibrio vulgaris RCH1 Preprotein translocase subunit SecE YP_005703478.1 3024110 D 573059 CDS YP_005703479.1 387154543 12868557 3024373..3024924 1 NC_017310.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: dde:Dde_2991 transcription antitermination protein NusG; SMART: NGN domain-containing protein; KOW domain protein; NusG antitermination factor 3024924 12868557 Deval_2699 Desulfovibrio vulgaris RCH1 NusG antitermination factor YP_005703479.1 3024373 D 573059 CDS YP_005703480.1 387154544 12868558 3024981..3025403 1 NC_017310.1 TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: dds:Ddes_1632 ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 3025403 12868558 Deval_2700 Desulfovibrio vulgaris RCH1 50S ribosomal protein L11 YP_005703480.1 3024981 D 573059 CDS YP_005703481.1 387154545 12868559 3025513..3026220 1 NC_017310.1 KEGG: dde:Dde_2993 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; 50S ribosomal protein L1 3026220 12868559 Deval_2701 Desulfovibrio vulgaris RCH1 50S ribosomal protein L1 YP_005703481.1 3025513 D 573059 CDS YP_005703482.1 387154546 12868560 3026389..3026910 1 NC_017310.1 PFAM: ribosomal protein L10; KEGG: dde:Dde_2994 50S ribosomal protein L10; 50S ribosomal protein L10 3026910 12868560 Deval_2702 Desulfovibrio vulgaris RCH1 50S ribosomal protein L10 YP_005703482.1 3026389 D 573059 CDS YP_005703483.1 387154547 12868561 3026964..3027347 1 NC_017310.1 KEGG: dds:Ddes_1635 ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 3027347 12868561 Deval_2703 Desulfovibrio vulgaris RCH1 50S ribosomal protein L7/L12 YP_005703483.1 3026964 D 573059 CDS YP_005703484.1 387154548 12868562 3027813..3031931 1 NC_017310.1 KEGG: dde:Dde_2997 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; DNA-directed RNA polymerase subunit beta 3031931 12868562 Deval_2704 Desulfovibrio vulgaris RCH1 DNA-directed RNA polymerase subunit beta YP_005703484.1 3027813 D 573059 CDS YP_005703485.1 387154549 12868563 3032039..3036196 1 NC_017310.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 3036196 12868563 Deval_2705 Desulfovibrio vulgaris RCH1 DNA-directed RNA polymerase subunit beta' YP_005703485.1 3032039 D 573059 CDS YP_005703486.1 387154550 12868564 3036740..3037345 1 NC_017310.1 KEGG: dde:Dde_2999 hypothetical protein; hypothetical protein 3037345 12868564 Deval_2706 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703486.1 3036740 D 573059 CDS YP_005703487.1 387154551 12868565 3037359..3039560 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 3039560 12868565 Deval_2707 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005703487.1 3037359 D 573059 CDS YP_005703488.1 387154552 12868566 3039594..3040520 1 NC_017310.1 PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_3001 hypothetical protein; hypothetical protein 3040520 12868566 Deval_2708 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703488.1 3039594 D 573059 CDS YP_005703489.1 387154553 12868567 3040532..3041908 1 NC_017310.1 TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; PAS fold-4 domain protein; KEGG: dde:Dde_3002 putative PAS/PAC sensor protein; SMART: response regulator receiver; PAS domain containing protein; metal-dependent phosphohydrolase HD region; putative PAS/PAC sensor protein 3041908 12868567 Deval_2709 Desulfovibrio vulgaris RCH1 putative PAS/PAC sensor protein YP_005703489.1 3040532 D 573059 CDS YP_005703490.1 387154554 12868568 3041912..3043330 1 NC_017310.1 KEGG: dde:Dde_3003 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 3043330 12868568 Deval_2710 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005703490.1 3041912 D 573059 CDS YP_005703491.1 387154555 12868569 3043488..3044240 1 NC_017310.1 TIGRFAM: phosphoglycerate mutase 1 family; KEGG: dde:Dde_3004 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3044240 12868569 Deval_2711 Desulfovibrio vulgaris RCH1 phosphoglycerate mutase YP_005703491.1 3043488 D 573059 CDS YP_005703492.1 387154556 12868570 3044441..3045796 1 NC_017310.1 PFAM: response regulator receiver; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein; response regulator receiver 3045796 12868570 Deval_2712 Desulfovibrio vulgaris RCH1 response regulator receiver YP_005703492.1 3044441 D 573059 CDS YP_005703493.1 387154557 12868571 3046042..3047214 1 NC_017310.1 PFAM: protein of unknown function DUF39; KEGG: dde:Dde_3007 hypothetical protein; hypothetical protein 3047214 12868571 Deval_2713 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703493.1 3046042 D 573059 CDS YP_005703494.1 387154558 12868572 3047240..3048127 1 NC_017310.1 KEGG: dde:Dde_3008 hypothetical protein; hypothetical protein 3048127 12868572 Deval_2714 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703494.1 3047240 D 573059 CDS YP_005703495.1 387154559 12868573 3048414..3048524 1 NC_017310.1 KEGG: dds:Ddes_0093 hypothetical protein; hypothetical protein 3048524 12868573 Deval_2715 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703495.1 3048414 D 573059 CDS YP_005703496.1 387154560 12868574 3048656..3048955 1 NC_017310.1 KEGG: drt:Dret_2465 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; FmdB family regulatory protein 3048955 12868574 Deval_2716 Desulfovibrio vulgaris RCH1 FmdB family regulatory protein YP_005703496.1 3048656 D 573059 CDS YP_005703497.1 387154561 12868575 3049055..3050347 1 NC_017310.1 KEGG: dde:Dde_3011 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; adenylosuccinate lyase 3050347 12868575 Deval_2717 Desulfovibrio vulgaris RCH1 adenylosuccinate lyase YP_005703497.1 3049055 D 573059 CDS YP_005703498.1 387154562 12868576 3050359..3050919 1 NC_017310.1 TIGRFAM: orotate phosphoribosyltransferase; KEGG: dds:Ddes_0096 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 3050919 12868576 Deval_2718 Desulfovibrio vulgaris RCH1 orotate phosphoribosyltransferase YP_005703498.1 3050359 D 573059 CDS YP_005703499.1 387154563 12868577 3050979..3052268 1 NC_017310.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 3052268 12868577 Deval_2719 Desulfovibrio vulgaris RCH1 ErfK/YbiS/YcfS/YnhG family protein YP_005703499.1 3050979 D 573059 CDS YP_005703500.1 387154564 12868578 3052265..3053164 1 NC_017310.1 KEGG: lip:LI1000 hypothetical protein; hypothetical protein 3053164 12868578 Deval_2720 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703500.1 3052265 D 573059 CDS YP_005703501.1 387154565 12868579 complement(3053555..3053797) 1 NC_017310.1 KEGG: dde:Dde_3015 hypothetical protein; hypothetical protein 3053797 12868579 Deval_2721 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703501.1 3053555 R 573059 CDS YP_005703502.1 387154566 12868580 complement(3053881..3055950) 1 NC_017310.1 KEGG: dde:Dde_3016 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase 3055950 12868580 Deval_2722 Desulfovibrio vulgaris RCH1 anaerobic ribonucleoside-triphosphate reductase YP_005703502.1 3053881 R 573059 CDS YP_005703503.1 387154567 12868581 3056620..3057468 1 NC_017310.1 PFAM: flagellin domain protein; KEGG: dde:Dde_3018 flagellin N-terminal domain-containing protein; flagellin domain-containing protein 3057468 12868581 Deval_2723 Desulfovibrio vulgaris RCH1 flagellin domain-containing protein YP_005703503.1 3056620 D 573059 CDS YP_005703504.1 387154568 12868582 3057672..3058025 1 NC_017310.1 PFAM: protein of unknown function DUF486; KEGG: dds:Ddes_0627 protein of unknown function DUF486; hypothetical protein 3058025 12868582 Deval_2724 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703504.1 3057672 D 573059 CDS YP_005703505.1 387154569 12868583 complement(3058012..3059730) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold-3 domain protein; KEGG: dde:Dde_2518 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 3059730 12868583 Deval_2725 Desulfovibrio vulgaris RCH1 PAS/PAC sensor-containing diguanylate cyclase YP_005703505.1 3058012 R 573059 CDS YP_005703506.1 387154570 12868584 3059907..3061619 1 NC_017310.1 KEGG: dds:Ddes_0267 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; glutaminyl-tRNA synthetase 3061619 12868584 Deval_2726 Desulfovibrio vulgaris RCH1 glutaminyl-tRNA synthetase YP_005703506.1 3059907 D 573059 CDS YP_005703507.1 387154571 12868585 complement(3061879..3062916) 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dba:Dbac_0438 protein of unknown function DUF6 transmembrane; hypothetical protein 3062916 12868585 Deval_2727 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703507.1 3061879 R 573059 CDS YP_005703508.1 387154572 12868586 3063242..3064804 1 NC_017310.1 KEGG: dde:Dde_0621 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; DeoR family transcriptional regulator 3064804 12868586 Deval_2728 Desulfovibrio vulgaris RCH1 DeoR family transcriptional regulator YP_005703508.1 3063242 D 573059 CDS YP_005703509.1 387154573 12868589 3065198..3066877 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Cache domain protein; KEGG: tcx:Tcr_1920 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase 3066877 12868589 Deval_2729 Desulfovibrio vulgaris RCH1 diguanylate cyclase YP_005703509.1 3065198 D 573059 CDS YP_005703510.1 387154574 12868590 complement(3067297..3068334) 1 NC_017310.1 KEGG: dba:Dbac_2263 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; Fis family sigma-54 specific transcriptional regulator 3068334 12868590 Deval_2730 Desulfovibrio vulgaris RCH1 Fis family sigma-54 specific transcriptional regulator YP_005703510.1 3067297 R 573059 CDS YP_005703511.1 387154575 12868591 3068581..3069579 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: dds:Ddes_0811 protein of unknown function DUF81; hypothetical protein 3069579 12868591 Deval_2731 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703511.1 3068581 D 573059 CDS YP_005703512.1 387154576 12868592 3069592..3070008 1 NC_017310.1 KEGG: dma:DMR_40110 hypothetical membrane protein; hypothetical protein 3070008 12868592 Deval_2732 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703512.1 3069592 D 573059 CDS YP_005703513.1 387154577 12868593 3070096..3071520 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_0318 Fis family transcriptional regulator; SMART: AAA ATPase; PAS modulated Fis family sigma-54-specific transcriptional regulator 3071520 12868593 Deval_2733 Desulfovibrio vulgaris RCH1 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_005703513.1 3070096 D 573059 CDS YP_005703514.1 387154578 12868594 3071524..3071871 1 NC_017310.1 KEGG: dba:Dbac_2267 hypothetical protein; hypothetical protein 3071871 12868594 Deval_2734 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703514.1 3071524 D 573059 CDS YP_005703515.1 387154579 12868595 3071868..3073601 1 NC_017310.1 KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 3073601 12868595 Deval_2735 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005703515.1 3071868 D 573059 CDS YP_005703516.1 387154580 12868596 3073605..3073991 1 NC_017310.1 KEGG: dma:DMR_40070 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3073991 12868596 Deval_2736 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703516.1 3073605 D 573059 CDS YP_005703517.1 387154581 12868597 3073993..3074652 1 NC_017310.1 KEGG: dds:Ddes_0815 hypothetical protein; hypothetical protein 3074652 12868597 Deval_2737 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703517.1 3073993 D 573059 CDS YP_005703518.1 387154582 12868598 3074772..3075071 1 NC_017310.1 KEGG: bmr:BMI_II773 phosphogluconate dehydratase; hypothetical protein 3075071 12868598 Deval_2738 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703518.1 3074772 D 573059 CDS YP_005703519.1 387154583 12868599 3075270..3075725 1 NC_017310.1 KEGG: dma:DMR_40050 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3075725 12868599 Deval_2739 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703519.1 3075270 D 573059 CDS YP_005703520.1 387154584 12868600 3075739..3076863 1 NC_017310.1 KEGG: dds:Ddes_0817 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; response regulator receiver sensor signal transduction histidine kinase 3076863 12868600 Deval_2740 Desulfovibrio vulgaris RCH1 response regulator receiver sensor signal transduction histidine kinase YP_005703520.1 3075739 D 573059 CDS YP_005703521.1 387154585 12868601 complement(3076959..3078155) 1 NC_017310.1 KEGG: dsa:Desal_1453 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; response regulator receiver sensor signal transduction histidine kinase 3078155 12868601 Deval_2741 Desulfovibrio vulgaris RCH1 response regulator receiver sensor signal transduction histidine kinase YP_005703521.1 3076959 R 573059 CDS YP_005703522.1 387154586 12868602 complement(3078404..3080389) 1 NC_017310.1 KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase 3080389 12868602 Deval_2742 Desulfovibrio vulgaris RCH1 acetate/CoA ligase YP_005703522.1 3078404 R 573059 CDS YP_005703523.1 387154587 12868603 3080614..3083310 1 NC_017310.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dde:Dde_3208 acetyltransferase; N-acetyltransferase GCN5 3083310 12868603 Deval_2743 Desulfovibrio vulgaris RCH1 N-acetyltransferase GCN5 YP_005703523.1 3080614 D 573059 CDS YP_005703524.1 387154588 12868604 complement(3083652..3084491) 1 NC_017310.1 PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein; glycosyl transferase family protein 3084491 12868604 Deval_2744 Desulfovibrio vulgaris RCH1 glycosyl transferase family protein YP_005703524.1 3083652 R 573059 CDS YP_005703525.1 387154589 12868605 complement(3084717..3085268) 1 NC_017310.1 PFAM: CheD family protein; KEGG: dde:Dde_3212 CheD, stimulates methylation of MCP proteins; protein CheD 3085268 12868605 Deval_2745 Desulfovibrio vulgaris RCH1 protein CheD YP_005703525.1 3084717 R 573059 CDS YP_005703526.1 387154590 12868606 complement(3085350..3085625) 1 NC_017310.1 KEGG: dde:Dde_3213 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 3085625 12868606 Deval_2746 Desulfovibrio vulgaris RCH1 histone family protein DNA-binding protein YP_005703526.1 3085350 R 573059 CDS YP_005703527.1 387154591 12868607 complement(3085706..3085885) 1 NC_017310.1 hypothetical protein 3085885 12868607 Deval_2747 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703527.1 3085706 R 573059 CDS YP_005703528.1 387154592 12868608 complement(3085891..3086931) 1 NC_017310.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0082 hypothetical protein; membrane-bound metal-dependent hydrolase 3086931 12868608 Deval_2748 Desulfovibrio vulgaris RCH1 membrane-bound metal-dependent hydrolase YP_005703528.1 3085891 R 573059 CDS YP_005703529.1 387154593 12868609 complement(3087145..3088257) 1 NC_017310.1 PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: dde:Dde_3214 hypothetical protein; hypothetical protein 3088257 12868609 Deval_2749 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703529.1 3087145 R 573059 CDS YP_005703530.1 387154594 12868610 3088595..3089227 1 NC_017310.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU0572 HAD family hydrolase; haloacid dehalogenase domain-containing protein hydrolase 3089227 12868610 Deval_2750 Desulfovibrio vulgaris RCH1 haloacid dehalogenase domain-containing protein hydrolase YP_005703530.1 3088595 D 573059 CDS YP_005703531.1 387154595 12868611 3089337..3089990 1 NC_017310.1 TIGRFAM: phosphatidylserine decarboxylase related protein; KEGG: dde:Dde_3216 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase 3089990 12868611 Deval_2751 Desulfovibrio vulgaris RCH1 phosphatidylserine decarboxylase YP_005703531.1 3089337 D 573059 CDS YP_005703532.1 387154596 12868612 3090053..3090802 1 NC_017310.1 KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 3090802 12868612 Deval_2752 Desulfovibrio vulgaris RCH1 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_005703532.1 3090053 D 573059 CDS YP_005703533.1 387154597 12868613 3090979..3092508 1 NC_017310.1 KEGG: dde:Dde_3218 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; 2-isopropylmalate synthase 3092508 12868613 Deval_2753 Desulfovibrio vulgaris RCH1 2-isopropylmalate synthase YP_005703533.1 3090979 D 573059 CDS YP_005703534.1 387154598 12868614 3092510..3093769 1 NC_017310.1 KEGG: dde:Dde_3219 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase large subunit 3093769 12868614 Deval_2754 Desulfovibrio vulgaris RCH1 3-isopropylmalate dehydratase large subunit YP_005703534.1 3092510 D 573059 CDS YP_005703535.1 387154599 12868615 3093787..3094290 1 NC_017310.1 KEGG: dde:Dde_3220 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein; 3-isopropylmalate dehydratase small subunit 3094290 12868615 Deval_2755 Desulfovibrio vulgaris RCH1 3-isopropylmalate dehydratase small subunit YP_005703535.1 3093787 D 573059 CDS YP_005703536.1 387154600 12868616 3094293..3095300 1 NC_017310.1 PFAM: protein of unknown function DUF89; KEGG: dde:Dde_3221 hypothetical protein; hypothetical protein 3095300 12868616 Deval_2756 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703536.1 3094293 D 573059 CDS YP_005703537.1 387154601 12868617 3095330..3096403 1 NC_017310.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: dde:Dde_3222 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3096403 12868617 Deval_2757 Desulfovibrio vulgaris RCH1 3-isopropylmalate dehydrogenase YP_005703537.1 3095330 D 573059 CDS YP_005703538.1 387154602 12868618 complement(3097012..3097434) 1 NC_017310.1 KEGG: dde:Dde_3224 phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain protein; phage shock protein C 3097434 12868618 Deval_2758 Desulfovibrio vulgaris RCH1 phage shock protein C YP_005703538.1 3097012 R 573059 CDS YP_005703539.1 387154603 12868619 complement(3097431..3097730) 1 NC_017310.1 TIGRFAM: phage shock protein B; KEGG: dde:Dde_3225 hypothetical protein; phage shock protein B 3097730 12868619 Deval_2759 Desulfovibrio vulgaris RCH1 phage shock protein B YP_005703539.1 3097431 R 573059 CDS YP_005703540.1 387154604 12868620 complement(3097809..3098540) 1 NC_017310.1 KEGG: dde:Dde_3226 phage shock protein A; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; phage shock protein A, PspA 3098540 12868620 Deval_2760 Desulfovibrio vulgaris RCH1 phage shock protein A, PspA YP_005703540.1 3097809 R 573059 CDS YP_005703541.1 387154605 12868621 3098640..3099785 1 NC_017310.1 TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; KEGG: dde:Dde_3227 Fis family transcriptional regulator; SMART: AAA ATPase; sigma-54 interacting domain-containing protein 3099785 12868621 Deval_2761 Desulfovibrio vulgaris RCH1 sigma-54 interacting domain-containing protein YP_005703541.1 3098640 D 573059 CDS YP_005703542.1 387154606 12868622 3099815..3101767 1 NC_017310.1 KEGG: dde:Dde_3228 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdenum cofactor synthesis domain-containing protein 3101767 12868622 Deval_2762 Desulfovibrio vulgaris RCH1 molybdenum cofactor synthesis domain-containing protein YP_005703542.1 3099815 D 573059 CDS YP_005703543.1 387154607 12868623 3102146..3103018 1 NC_017310.1 KEGG: dma:DMR_39560 hypothetical protein; hypothetical protein 3103018 12868623 Deval_2763 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703543.1 3102146 D 573059 CDS YP_005703544.1 387154608 12868624 3103039..3104655 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3104655 12868624 Deval_2764 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005703544.1 3103039 D 573059 CDS YP_005703545.1 387154609 12868625 3104666..3107341 1 NC_017310.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431 putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; family 2 glycosyl transferase 3107341 12868625 Deval_2765 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005703545.1 3104666 D 573059 CDS YP_005703546.1 387154610 12868626 3107338..3108366 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: gem:GM21_3823 glycosyl transferase family 2; family 2 glycosyl transferase 3108366 12868626 Deval_2766 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005703546.1 3107338 D 573059 CDS YP_005703547.1 387154611 12868627 complement(3108637..3109800) 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0428 glycosyltransferase-like protein; group 1 glycosyl transferase 3109800 12868627 Deval_2767 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005703547.1 3108637 R 573059 CDS YP_005703548.1 387154612 12868628 complement(3109955..3110878) 1 NC_017310.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0427 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 3110878 12868628 Deval_2768 Desulfovibrio vulgaris RCH1 NAD-dependent epimerase/dehydratase YP_005703548.1 3109955 R 573059 CDS YP_005703549.1 387154613 12868629 complement(3110880..3111656) 1 NC_017310.1 KEGG: dde:Dde_0428 glycosyltransferase-like protein; glycosyltransferase-like protein 3111656 12868629 Deval_2769 Desulfovibrio vulgaris RCH1 glycosyltransferase-like protein YP_005703549.1 3110880 R 573059 CDS YP_005703550.1 387154614 12868630 complement(3111686..3113056) 1 NC_017310.1 KEGG: gem:GM21_2601 hypothetical protein; hypothetical protein 3113056 12868630 Deval_2770 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703550.1 3111686 R 573059 CDS YP_005703551.1 387154615 12868631 complement(3113046..3113873) 1 NC_017310.1 PFAM: formyl transferase domain protein; KEGG: tro:trd_0824 methionyl-tRNA formyltransferase; formyl transferase domain-containing protein 3113873 12868631 Deval_2771 Desulfovibrio vulgaris RCH1 formyl transferase domain-containing protein YP_005703551.1 3113046 R 573059 CDS YP_005703552.1 387154616 12868632 complement(3114038..3115228) 1 NC_017310.1 KEGG: mag:amb0692 hypothetical protein; hypothetical protein 3115228 12868632 Deval_2772 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703552.1 3114038 R 573059 CDS YP_005703553.1 387154617 12868633 complement(3115225..3116022) 1 NC_017310.1 PFAM: protein of unknown function DUF692; KEGG: fre:Franean1_4348 hypothetical protein; hypothetical protein 3116022 12868633 Deval_2773 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703553.1 3115225 R 573059 CDS YP_005703554.1 387154618 12868634 complement(3116019..3117152) 1 NC_017310.1 PFAM: Methyltransferase type 11; KEGG: shl:Shal_1398 methyltransferase type 12; type 11 methyltransferase 3117152 12868634 Deval_2774 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005703554.1 3116019 R 573059 CDS YP_005703555.1 387154619 12868635 complement(3117223..3118335) 1 NC_017310.1 PFAM: Radical SAM domain protein; KEGG: dsa:Desal_1058 radical SAM domain protein; radical SAM protein 3118335 12868635 Deval_2775 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703555.1 3117223 R 573059 CDS YP_005703556.1 387154620 12868636 3118664..3120388 1 NC_017310.1 PFAM: Radical SAM domain protein; KEGG: dsa:Desal_0562 radical SAM domain protein; radical SAM protein 3120388 12868636 Deval_2776 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703556.1 3118664 D 573059 CDS YP_005703557.1 387154621 12868637 3120399..3121433 1 NC_017310.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cwo:Cwoe_1546 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 3121433 12868637 Deval_2777 Desulfovibrio vulgaris RCH1 DegT/DnrJ/EryC1/StrS aminotransferase YP_005703557.1 3120399 D 573059 CDS YP_005703558.1 387154622 12868638 3121444..3122805 1 NC_017310.1 PFAM: acylneuraminate cytidylyltransferase; Methyltransferase type 12; KEGG: dma:DMR_40450 acylneuraminate cytidylyltransferase family protein; acylneuraminate cytidylyltransferase 3122805 12868638 Deval_2778 Desulfovibrio vulgaris RCH1 acylneuraminate cytidylyltransferase YP_005703558.1 3121444 D 573059 CDS YP_005703559.1 387154623 12868639 3122808..3124031 1 NC_017310.1 KEGG: ele:Elen_2416 hypothetical protein; hypothetical protein 3124031 12868639 Deval_2779 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703559.1 3122808 D 573059 CDS YP_005703560.1 387154624 12868640 3124028..3125104 1 NC_017310.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: mag:amb0080 sialic acid synthase; N-acetylneuraminic acid synthase domain-containing protein 3125104 12868640 Deval_2780 Desulfovibrio vulgaris RCH1 N-acetylneuraminic acid synthase domain-containing protein YP_005703560.1 3124028 D 573059 CDS YP_005703561.1 387154625 12868641 3125101..3126084 1 NC_017310.1 PFAM: Radical SAM domain protein; KEGG: mno:Mnod_3289 radical SAM domain protein; radical SAM protein 3126084 12868641 Deval_2781 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703561.1 3125101 D 573059 CDS YP_005703562.1 387154626 12868642 3126094..3127272 1 NC_017310.1 KEGG: bsu:BSU37890 putative glutamine-dependent sugar transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 3127272 12868642 Deval_2782 Desulfovibrio vulgaris RCH1 glutamine--scyllo-inositol transaminase YP_005703562.1 3126094 D 573059 CDS YP_005703563.1 387154627 12868643 3127277..3128071 1 NC_017310.1 PFAM: WbqC-like family protein; KEGG: dma:DMR_40380 hypothetical protein; WbqC-like family protein 3128071 12868643 Deval_2783 Desulfovibrio vulgaris RCH1 WbqC-like family protein YP_005703563.1 3127277 D 573059 CDS YP_005703564.1 387154628 12868644 3128100..3129971 1 NC_017310.1 KEGG: xop:PXO_03686 glutamate-ammonia-ligase adenylyltransferase; hypothetical protein 3129971 12868644 Deval_2784 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703564.1 3128100 D 573059 CDS YP_005703565.1 387154629 12868645 3130024..3131730 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2892 glycosyl transferase family protein; family 2 glycosyl transferase 3131730 12868645 Deval_2785 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005703565.1 3130024 D 573059 CDS YP_005703566.1 387154630 12868646 3131718..3133811 1 NC_017310.1 KEGG: dma:DMR_00560 asparagine synthetase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 3133811 12868646 Deval_2786 Desulfovibrio vulgaris RCH1 asparagine synthase YP_005703566.1 3131718 D 573059 CDS YP_005703567.1 387154631 12868647 3133793..3134359 1 NC_017310.1 PFAM: Methyltransferase type 11; KEGG: mag:amb3020 hypothetical protein; type 11 methyltransferase 3134359 12868647 Deval_2787 Desulfovibrio vulgaris RCH1 type 11 methyltransferase YP_005703567.1 3133793 D 573059 CDS YP_005703568.1 387154632 12868648 complement(3134474..3135919) 1 NC_017310.1 KEGG: dma:DMR_p1_00150 hypothetical protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 3135919 12868648 Deval_2788 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703568.1 3134474 R 573059 CDS YP_005703569.1 387154633 12868649 complement(3135951..3136982) 1 NC_017310.1 PFAM: Methyltransferase type 12; KEGG: ret:RHE_CH00772 putative methyltransferase protein; type 12 methyltransferase 3136982 12868649 Deval_2789 Desulfovibrio vulgaris RCH1 type 12 methyltransferase YP_005703569.1 3135951 R 573059 CDS YP_005703570.1 387154634 12868650 complement(3136979..3138112) 1 NC_017310.1 KEGG: sti:Sthe_2856 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 3138112 12868650 Deval_2790 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703570.1 3136979 R 573059 CDS YP_005703571.1 387154635 12868651 complement(3138194..3139651) 1 NC_017310.1 KEGG: gbm:Gbem_3304 Radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 3139651 12868651 Deval_2791 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703571.1 3138194 R 573059 CDS YP_005703572.1 387154636 12868652 complement(3139687..3140055) 1 NC_017310.1 KEGG: dds:Ddes_0695 hypothetical protein; hypothetical protein 3140055 12868652 Deval_2792 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703572.1 3139687 R 573059 CDS YP_005703573.1 387154637 12868653 complement(3140223..3141254) 1 NC_017310.1 KEGG: dde:Dde_3231 putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3141254 12868653 Deval_2793 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005703573.1 3140223 R 573059 CDS YP_005703574.1 387154638 12868654 3141655..3145074 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3233 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; multi-sensor hybrid histidine kinase 3145074 12868654 Deval_2794 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005703574.1 3141655 D 573059 CDS YP_005703575.1 387154639 12868655 3145071..3146495 1 NC_017310.1 KEGG: dde:Dde_3234 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; putative two component, sigma54 specific, transcriptional regulator, Fis family 3146495 12868655 Deval_2795 Desulfovibrio vulgaris RCH1 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_005703575.1 3145071 D 573059 CDS YP_005703576.1 387154640 12868656 3146905..3150552 1 NC_017310.1 KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate ferredoxin/flavodoxin oxidoreductase 3150552 12868656 Deval_2796 Desulfovibrio vulgaris RCH1 pyruvate ferredoxin/flavodoxin oxidoreductase YP_005703576.1 3146905 D 573059 CDS YP_005703577.1 387154641 12868657 3150658..3152370 1 NC_017310.1 KEGG: dba:Dbac_1045 L-lactate transport; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 3152370 12868657 Deval_2797 Desulfovibrio vulgaris RCH1 L-lactate transport YP_005703577.1 3150658 D 573059 CDS YP_005703578.1 387154642 12868658 3152545..3153930 1 NC_017310.1 PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_3239 glycolate oxidase, subunit GlcD; FAD linked oxidase domain-containing protein 3153930 12868658 Deval_2798 Desulfovibrio vulgaris RCH1 FAD linked oxidase domain-containing protein YP_005703578.1 3152545 D 573059 CDS YP_005703579.1 387154643 12868659 3153935..3155230 1 NC_017310.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein; hypothetical protein 3155230 12868659 Deval_2799 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703579.1 3153935 D 573059 CDS YP_005703580.1 387154644 12868660 3155354..3157468 1 NC_017310.1 KEGG: dde:Dde_3241 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; phosphate acetyltransferase 3157468 12868660 Deval_2800 Desulfovibrio vulgaris RCH1 phosphate acetyltransferase YP_005703580.1 3155354 D 573059 CDS YP_005703581.1 387154645 12868661 3157494..3158702 1 NC_017310.1 KEGG: dde:Dde_3242 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 3158702 12868661 Deval_2801 Desulfovibrio vulgaris RCH1 acetate kinase YP_005703581.1 3157494 D 573059 CDS YP_005703582.1 387154646 12868662 3158802..3159893 1 NC_017310.1 PFAM: DRTGG domain protein; KEGG: dde:Dde_3243 hypothetical protein; DRTGG domain-containing protein 3159893 12868662 Deval_2802 Desulfovibrio vulgaris RCH1 DRTGG domain-containing protein YP_005703582.1 3158802 D 573059 CDS YP_005703583.1 387154647 12868663 3159890..3160519 1 NC_017310.1 PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein; hypothetical protein 3160519 12868663 Deval_2803 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703583.1 3159890 D 573059 CDS YP_005703584.1 387154648 12868664 3160523..3162676 1 NC_017310.1 PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein; hypothetical protein 3162676 12868664 Deval_2804 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703584.1 3160523 D 573059 CDS YP_005703585.1 387154649 12868665 3162868..3164679 1 NC_017310.1 KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 3164679 12868665 Deval_2805 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_005703585.1 3162868 D 573059 CDS YP_005703586.1 387154650 12868666 complement(3164862..3165968) 1 NC_017310.1 KEGG: dde:Dde_3247 hypothetical protein; hypothetical protein 3165968 12868666 Deval_2806 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703586.1 3164862 R 573059 CDS YP_005703587.1 387154651 12868667 complement(3165955..3166827) 1 NC_017310.1 KEGG: dde:Dde_3248 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain-containing protein 3166827 12868667 Deval_2807 Desulfovibrio vulgaris RCH1 Rhodanese domain-containing protein YP_005703587.1 3165955 R 573059 CDS YP_005703588.1 387154652 12868669 complement(3167281..3168270) 1 NC_017310.1 PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein 3168270 12868669 Deval_2808 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005703588.1 3167281 R 573059 CDS YP_005703589.1 387154653 12868670 3168361..3168651 1 NC_017310.1 PFAM: cytochrome c class I; KEGG: dba:Dbac_1543 cytochrome c-553; cytochrome c class I 3168651 12868670 Deval_2809 Desulfovibrio vulgaris RCH1 cytochrome c class I YP_005703589.1 3168361 D 573059 CDS YP_005703590.1 387154654 12868671 3168691..3168927 1 NC_017310.1 PFAM: protein of unknown function DUF903; KEGG: pmy:Pmen_2579 hypothetical protein; hypothetical protein 3168927 12868671 Deval_2810 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703590.1 3168691 D 573059 CDS YP_005703591.1 387154655 12868672 3169156..3170187 1 NC_017310.1 KEGG: dde:Dde_0264 hypothetical protein; hypothetical protein 3170187 12868672 Deval_2811 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703591.1 3169156 D 573059 CDS YP_005703592.1 387154656 12868673 3170319..3171020 1 NC_017310.1 KEGG: dde:Dde_0393 hypothetical protein; hypothetical protein 3171020 12868673 Deval_2812 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703592.1 3170319 D 573059 CDS YP_005703593.1 387154657 12868674 3171487..3174348 1 NC_017310.1 KEGG: dde:Dde_0257 histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS/PAC sensor hybrid histidine kinase 3174348 12868674 Deval_2813 Desulfovibrio vulgaris RCH1 PAS/PAC sensor hybrid histidine kinase YP_005703593.1 3171487 D 573059 CDS YP_005703594.1 387154658 12868675 complement(3174565..3175671) 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 3175671 12868675 Deval_2814 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005703594.1 3174565 R 573059 CDS YP_005703595.1 387154659 12868676 complement(3176141..3177088) 1 NC_017310.1 PFAM: aminotransferase class IV; KEGG: dde:Dde_0255 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase; class IV aminotransferase 3177088 12868676 Deval_2815 Desulfovibrio vulgaris RCH1 class IV aminotransferase YP_005703595.1 3176141 R 573059 CDS YP_005703596.1 387154660 12868678 complement(3177347..3178396) 1 NC_017310.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 3178396 12868678 Deval_2816 Desulfovibrio vulgaris RCH1 aspartate-semialdehyde dehydrogenase YP_005703596.1 3177347 R 573059 CDS YP_005703597.1 387154661 12868679 complement(3178443..3178856) 1 NC_017310.1 KEGG: dde:Dde_0253 hemerythrin; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin-like metal-binding protein 3178856 12868679 Deval_2817 Desulfovibrio vulgaris RCH1 hemerythrin-like metal-binding protein YP_005703597.1 3178443 R 573059 CDS YP_005703598.1 387154662 12868680 complement(3178980..3179414) 1 NC_017310.1 PFAM: protein of unknown function DUF606; KEGG: dde:Dde_0252 hypothetical protein; hypothetical protein 3179414 12868680 Deval_2818 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703598.1 3178980 R 573059 CDS YP_005703599.1 387154663 12868681 complement(3179636..3180025) 1 NC_017310.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_0251 mutator MutT protein; NUDIX hydrolase 3180025 12868681 Deval_2819 Desulfovibrio vulgaris RCH1 NUDIX hydrolase YP_005703599.1 3179636 R 573059 CDS YP_005703600.1 387154664 12868682 complement(3180025..3182004) 1 NC_017310.1 KEGG: dde:Dde_0250 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3182004 12868682 Deval_2820 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703600.1 3180025 R 573059 CDS YP_005703601.1 387154665 12868683 complement(3182239..3183132) 1 NC_017310.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dde:Dde_0539 protein-L-isoaspartate methyltransferase-like; tRNA methyltransferase complex GCD14 subunit 3183132 12868683 Deval_2821 Desulfovibrio vulgaris RCH1 tRNA methyltransferase complex GCD14 subunit YP_005703601.1 3182239 R 573059 CDS YP_005703602.1 387154666 12868684 3183503..3184597 1 NC_017310.1 PFAM: Radical SAM domain protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein; radical SAM protein 3184597 12868684 Deval_2822 Desulfovibrio vulgaris RCH1 radical SAM protein YP_005703602.1 3183503 D 573059 CDS YP_005703603.1 387154667 12868685 3184643..3186112 1 NC_017310.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: dde:Dde_0537 ribonuclease E; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, Rne/Rng family 3186112 12868685 Deval_2823 Desulfovibrio vulgaris RCH1 ribonuclease, Rne/Rng family YP_005703603.1 3184643 D 573059 CDS YP_005703604.1 387154668 12868686 3186115..3186768 1 NC_017310.1 PFAM: protein of unknown function DUF208; KEGG: dba:Dbac_3350 protein of unknown function DUF208; hypothetical protein 3186768 12868686 Deval_2824 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703604.1 3186115 D 573059 CDS YP_005703605.1 387154669 12868687 3186813..3188306 1 NC_017310.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: dds:Ddes_2205 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 3188306 12868687 Deval_2825 Desulfovibrio vulgaris RCH1 oxygen-independent coproporphyrinogen III oxidase YP_005703605.1 3186813 D 573059 CDS YP_005703606.1 387154670 12868688 3188303..3191974 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: mno:Mnod_4585 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; multi-sensor hybrid histidine kinase 3191974 12868688 Deval_2826 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005703606.1 3188303 D 573059 CDS YP_005703607.1 387154671 12868689 complement(3192159..3193625) 1 NC_017310.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dde:Dde_0560 signal recognition particle-docking protein FtsY; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3193625 12868689 Deval_2827 Desulfovibrio vulgaris RCH1 signal recognition particle-docking protein FtsY YP_005703607.1 3192159 R 573059 CDS YP_005703608.1 387154672 12868690 3193810..3196104 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein; signal transduction histidine kinase, nitrogen specific, NtrB 3196104 12868690 Deval_2828 Desulfovibrio vulgaris RCH1 signal transduction histidine kinase, nitrogen specific, NtrB YP_005703608.1 3193810 D 573059 CDS YP_005703609.1 387154673 12868691 complement(3196460..3199702) 1 NC_017310.1 KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; multi-sensor hybrid histidine kinase 3199702 12868691 Deval_2829 Desulfovibrio vulgaris RCH1 multi-sensor hybrid histidine kinase YP_005703609.1 3196460 R 573059 CDS YP_005703610.1 387154674 12868692 complement(3199824..3201512) 1 NC_017310.1 manually curated; TIGRFAM: integral membrane protein MviN; KEGG: dde:Dde_0543 integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein MviN 3201512 12868692 Deval_2830 Desulfovibrio vulgaris RCH1 integral membrane protein MviN YP_005703610.1 3199824 R 573059 CDS YP_005703611.1 387154675 12868693 3201854..3203608 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: dde:Dde_0550 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3203608 12868693 Deval_2831 Desulfovibrio vulgaris RCH1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_005703611.1 3201854 D 573059 CDS YP_005703612.1 387154676 12868694 complement(3203736..3205388) 1 NC_017310.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 AMP-binding domain protein; AMP-dependent synthetase and ligase 3205388 12868694 Deval_2832 Desulfovibrio vulgaris RCH1 AMP-dependent synthetase and ligase YP_005703612.1 3203736 R 573059 CDS YP_005703613.1 387154677 12868695 complement(3205403..3205972) 1 NC_017310.1 KEGG: dde:Dde_0556 MerR family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; cupin 3205972 12868695 Deval_2833 Desulfovibrio vulgaris RCH1 cupin YP_005703613.1 3205403 R 573059 CDS YP_005703614.1 387154678 12868696 3206136..3208586 1 NC_017310.1 KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; (NiFe) hydrogenase maturation protein HypF 3208586 12868696 Deval_2834 Desulfovibrio vulgaris RCH1 (NiFe) hydrogenase maturation protein HypF YP_005703614.1 3206136 D 573059 CDS YP_005703615.1 387154679 12868697 3208816..3211299 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: tte:TTE1100 diguanylate cyclase/phosphodiesterase; SMART: GGDEF domain containing protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase 3211299 12868697 Deval_2835 Desulfovibrio vulgaris RCH1 PAS/PAC and GAF sensor-containing diguanylate cyclase YP_005703615.1 3208816 D 573059 CDS YP_005703616.1 387154680 12868698 complement(3211717..3213039) 1 NC_017310.1 PFAM: aminodeoxychorismate lyase; KEGG: dds:Ddes_0030 aminodeoxychorismate lyase; aminodeoxychorismate lyase 3213039 12868698 Deval_2836 Desulfovibrio vulgaris RCH1 aminodeoxychorismate lyase YP_005703616.1 3211717 R 573059 CDS YP_005703617.1 387154681 12868699 complement(3213036..3213464) 1 NC_017310.1 KEGG: dde:Dde_0314 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; Holliday junction resolvase YqgF 3213464 12868699 Deval_2837 Desulfovibrio vulgaris RCH1 Holliday junction resolvase YqgF YP_005703617.1 3213036 R 573059 CDS YP_005703618.1 387154682 12868700 complement(3213546..3217109) 1 NC_017310.1 PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0312 oxidoreductase; FAD linked oxidase domain-containing protein 3217109 12868700 Deval_2838 Desulfovibrio vulgaris RCH1 FAD linked oxidase domain-containing protein YP_005703618.1 3213546 R 573059 CDS YP_005703619.1 387154683 12868701 complement(3217276..3219273) 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 3219273 12868701 Deval_2839 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005703619.1 3217276 R 573059 CDS YP_005703620.1 387154684 12868702 3219449..3220360 1 NC_017310.1 KEGG: dde:Dde_0307 hypothetical protein; hypothetical protein 3220360 12868702 Deval_2840 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703620.1 3219449 D 573059 CDS YP_005703621.1 387154685 12868703 complement(3220671..3221558) 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dsa:Desal_2414 protein of unknown function DUF6 transmembrane; hypothetical protein 3221558 12868703 Deval_2841 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703621.1 3220671 R 573059 CDS YP_005703622.1 387154686 12868704 3222130..3222711 1 NC_017310.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_0306 hypothetical protein; alkyl hydroperoxide reductase 3222711 12868704 Deval_2842 Desulfovibrio vulgaris RCH1 alkyl hydroperoxide reductase YP_005703622.1 3222130 D 573059 CDS YP_005703623.1 387154687 12868705 3223253..3223900 1 NC_017310.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dsa:Desal_0285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 3223900 12868705 Deval_2843 Desulfovibrio vulgaris RCH1 alkyl hydroperoxide reductase YP_005703623.1 3223253 D 573059 CDS YP_005703624.1 387154688 12868706 3224647..3225249 1 NC_017310.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3225249 12868706 Deval_2844 Desulfovibrio vulgaris RCH1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_005703624.1 3224647 D 573059 CDS YP_005703625.1 387154689 12868707 3225511..3225909 1 NC_017310.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator; MucR family transcriptional regulator 3225909 12868707 Deval_2845 Desulfovibrio vulgaris RCH1 MucR family transcriptional regulator YP_005703625.1 3225511 D 573059 CDS YP_005703626.1 387154690 12868708 3226177..3227079 1 NC_017310.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein; hypothetical protein 3227079 12868708 Deval_2846 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703626.1 3226177 D 573059 CDS YP_005703627.1 387154691 12868709 complement(3227420..3229231) 1 NC_017310.1 KEGG: dde:Dde_0347 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 3229231 12868709 Deval_2847 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005703627.1 3227420 R 573059 CDS YP_005703628.1 387154692 12868710 complement(3229654..3230040) 1 NC_017310.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0346 MucR family transcriptional regulator; MucR family transcriptional regulator 3230040 12868710 Deval_2848 Desulfovibrio vulgaris RCH1 MucR family transcriptional regulator YP_005703628.1 3229654 R 573059 CDS YP_005703629.1 387154693 12868711 3230212..3230457 1 NC_017310.1 KEGG: dde:Dde_0344 hypothetical protein; hypothetical protein 3230457 12868711 Deval_2849 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703629.1 3230212 D 573059 CDS YP_005703630.1 387154694 12868712 3230408..3232273 1 NC_017310.1 KEGG: dde:Dde_0343 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid a,c-diamide synthase 3232273 12868712 Deval_2850 Desulfovibrio vulgaris RCH1 cobyrinic acid a,c-diamide synthase YP_005703630.1 3230408 D 573059 CDS YP_005703631.1 387154695 12868713 3232282..3232923 1 NC_017310.1 KEGG: dde:Dde_0342 precorrin-8X methylmutase; PFAM: Precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase 3232923 12868713 Deval_2851 Desulfovibrio vulgaris RCH1 precorrin-8X methylmutase YP_005703631.1 3232282 D 573059 CDS YP_005703632.1 387154696 12868714 3233032..3234765 1 NC_017310.1 KEGG: dde:Dde_0341 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 3234765 12868714 Deval_2852 Desulfovibrio vulgaris RCH1 DEAD/DEAH box helicase YP_005703632.1 3233032 D 573059 CDS YP_005703633.1 387154697 12868715 3234755..3235240 1 NC_017310.1 KEGG: dds:Ddes_0363 hypothetical protein; hypothetical protein 3235240 12868715 Deval_2853 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703633.1 3234755 D 573059 CDS YP_005703634.1 387154698 12868716 complement(3235725..3236930) 1 NC_017310.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 OMPP1/FadL/TodX family outer membrane protein; aromatic hydrocarbon degradation membrane protein 3236930 12868716 Deval_2854 Desulfovibrio vulgaris RCH1 aromatic hydrocarbon degradation membrane protein YP_005703634.1 3235725 R 573059 CDS YP_005703635.1 387154699 12868717 3237404..3238750 1 NC_017310.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pzu:PHZ_c2608 L-aspartate oxidase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3238750 12868717 Deval_2855 Desulfovibrio vulgaris RCH1 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_005703635.1 3237404 D 573059 CDS YP_005703636.1 387154700 12868718 3238965..3239612 1 NC_017310.1 KEGG: hch:HCH_03506 hypothetical protein; hypothetical protein 3239612 12868718 Deval_2856 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703636.1 3238965 D 573059 CDS YP_005703637.1 387154701 12868719 complement(3239656..3239883) 1 NC_017310.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 3239883 12868719 Deval_2857 Desulfovibrio vulgaris RCH1 rubredoxin-type Fe(Cys)4 protein YP_005703637.1 3239656 R 573059 CDS YP_005703638.1 387154702 12868720 complement(3239902..3240477) 1 NC_017310.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dol:Dole_2647 rubrerythrin; rubrerythrin 3240477 12868720 Deval_2858 Desulfovibrio vulgaris RCH1 rubrerythrin YP_005703638.1 3239902 R 573059 CDS YP_005703639.1 387154703 12868721 complement(3240522..3240908) 1 NC_017310.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein; ferric uptake regulator family protein 3240908 12868721 Deval_2859 Desulfovibrio vulgaris RCH1 ferric uptake regulator family protein YP_005703639.1 3240522 R 573059 CDS YP_005703640.1 387154704 12868722 complement(3240938..3241165) 1 NC_017310.1 hypothetical protein 3241165 12868722 Deval_2860 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703640.1 3240938 R 573059 CDS YP_005703641.1 387154705 12868723 complement(3241234..3242553) 1 NC_017310.1 PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein; outer membrane efflux protein 3242553 12868723 Deval_2861 Desulfovibrio vulgaris RCH1 outer membrane efflux protein YP_005703641.1 3241234 R 573059 CDS YP_005703642.1 387154706 12868724 3242690..3242893 1 NC_017310.1 hypothetical protein 3242893 12868724 Deval_2862 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703642.1 3242690 D 573059 CDS YP_005703643.1 387154707 12868725 3242937..3243629 1 NC_017310.1 KEGG: dde:Dde_3629 TolQ protein; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ 3243629 12868725 Deval_2863 Desulfovibrio vulgaris RCH1 protein TolQ YP_005703643.1 3242937 D 573059 CDS YP_005703644.1 387154708 12868726 3243639..3244058 1 NC_017310.1 KEGG: dds:Ddes_0861 protein TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; protein TolR 3244058 12868726 Deval_2864 Desulfovibrio vulgaris RCH1 protein TolR YP_005703644.1 3243639 D 573059 CDS YP_005703645.1 387154709 12868727 3244068..3245093 1 NC_017310.1 TIGRFAM: protein TolA; TonB family protein; KEGG: dds:Ddes_0860 protein TolA; protein TolA 3245093 12868727 Deval_2865 Desulfovibrio vulgaris RCH1 protein TolA YP_005703645.1 3244068 D 573059 CDS YP_005703646.1 387154710 12868728 3245121..3245786 1 NC_017310.1 TIGRFAM: TonB family protein; KEGG: dds:Ddes_0859 hypothetical protein; TonB family protein 3245786 12868728 Deval_2866 Desulfovibrio vulgaris RCH1 TonB family protein YP_005703646.1 3245121 D 573059 CDS YP_005703647.1 387154711 12868729 3245896..3247233 1 NC_017310.1 manually curated; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like beta Propeller containing protein; Tol-Pal system beta propeller repeat-containing protein TolB 3247233 12868729 Deval_2867 Desulfovibrio vulgaris RCH1 Tol-Pal system beta propeller repeat-containing protein TolB YP_005703647.1 3245896 D 573059 CDS YP_005703648.1 387154712 12868730 3247433..3247936 1 NC_017310.1 KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein, putative; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 3247936 12868730 Deval_2868 Desulfovibrio vulgaris RCH1 peptidoglycan-associated lipoprotein YP_005703648.1 3247433 D 573059 CDS YP_005703649.1 387154713 12868731 3249176..3249310 1 NC_017310.1 hypothetical protein 3249310 12868731 Deval_2869 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703649.1 3249176 D 573059 CDS YP_005703650.1 387154714 12868737 complement(3255799..3257640) 1 NC_017310.1 TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; Hemerythrin HHE cation binding domain protein; KEGG: kko:Kkor_1389 diguanylate cyclase; SMART: GGDEF domain containing protein; diguanylate cyclase with hemerythrin-like metal-binding domain protein 3257640 12868737 Deval_2870 Desulfovibrio vulgaris RCH1 diguanylate cyclase with hemerythrin-like metal-binding domain protein YP_005703650.1 3255799 R 573059 CDS YP_005703651.1 387154715 12868738 3258043..3259812 1 NC_017310.1 PFAM: cytochrome c class I; KEGG: dde:Dde_0561 cytochrome c family protein; cytochrome c class I 3259812 12868738 Deval_2871 Desulfovibrio vulgaris RCH1 cytochrome c class I YP_005703651.1 3258043 D 573059 CDS YP_005703652.1 387154716 12868739 complement(3259960..3261387) 1 NC_017310.1 KEGG: dsa:Desal_1359 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; Na+/H+ antiporter NhaC 3261387 12868739 Deval_2872 Desulfovibrio vulgaris RCH1 Na+/H+ antiporter NhaC YP_005703652.1 3259960 R 573059 CDS YP_005703653.1 387154717 12868740 complement(3261581..3261781) 1 NC_017310.1 KEGG: sfu:Sfum_2223 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 3261781 12868740 Deval_2873 Desulfovibrio vulgaris RCH1 4Fe-4S ferredoxin YP_005703653.1 3261581 R 573059 CDS YP_005703654.1 387154718 12868742 complement(3261821..3263542) 1 NC_017310.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: mag:amb1056 putative oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3263542 12868742 Deval_2874 Desulfovibrio vulgaris RCH1 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_005703654.1 3261821 R 573059 CDS YP_005703655.1 387154719 12868744 complement(3263789..3264598) 1 NC_017310.1 KEGG: dde:Dde_0463 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; CarD family transcriptional regulator 3264598 12868744 Deval_2875 Desulfovibrio vulgaris RCH1 CarD family transcriptional regulator YP_005703655.1 3263789 R 573059 CDS YP_005703656.1 387154720 12868746 complement(3264646..3265449) 1 NC_017310.1 KEGG: dde:Dde_3645 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 3265449 12868746 Deval_2876 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703656.1 3264646 R 573059 CDS YP_005703657.1 387154721 12868748 complement(3265500..3266627) 1 NC_017310.1 KEGG: dde:Dde_3646 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; carbamoyl-phosphate synthase small subunit 3266627 12868748 Deval_2877 Desulfovibrio vulgaris RCH1 carbamoyl-phosphate synthase small subunit YP_005703657.1 3265500 R 573059 CDS YP_005703658.1 387154722 12868750 complement(3266624..3267382) 1 NC_017310.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: dde:Dde_3647 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 3267382 12868750 Deval_2878 Desulfovibrio vulgaris RCH1 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_005703658.1 3266624 R 573059 CDS YP_005703659.1 387154723 12868751 3267701..3269290 1 NC_017310.1 KEGG: dde:Dde_3649 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; peptide chain release factor 3 3269290 12868751 Deval_2879 Desulfovibrio vulgaris RCH1 peptide chain release factor 3 YP_005703659.1 3267701 D 573059 CDS YP_005703660.1 387154724 12868752 3269555..3270157 1 NC_017310.1 KEGG: vvi:100265790 hypothetical protein LOC100265790; hypothetical protein 3270157 12868752 Deval_2880 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703660.1 3269555 D 573059 CDS YP_005703661.1 387154725 12868753 complement(3270285..3270590) 1 NC_017310.1 PFAM: Stress responsive alpha-beta barrel domain-containing protein; KEGG: dde:Dde_0194 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 3270590 12868753 Deval_2881 Desulfovibrio vulgaris RCH1 stress responsive alpha-beta barrel domain-containing protein YP_005703661.1 3270285 R 573059 CDS YP_005703662.1 387154726 12868754 3270771..3272465 1 NC_017310.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0193 AMP-binding enzyme family protein; AMP-dependent synthetase and ligase 3272465 12868754 Deval_2882 Desulfovibrio vulgaris RCH1 AMP-dependent synthetase and ligase YP_005703662.1 3270771 D 573059 CDS YP_005703663.1 387154727 12868755 complement(3272916..3274025) 1 NC_017310.1 PFAM: aminotransferase class V; KEGG: dat:HRM2_08190 aminotransferase, class V (putative purine catabolism protein PucG); class V aminotransferase 3274025 12868755 Deval_2883 Desulfovibrio vulgaris RCH1 class V aminotransferase YP_005703663.1 3272916 R 573059 CDS YP_005703664.1 387154728 12868756 complement(3274345..3275082) 1 NC_017310.1 KEGG: dma:DMR_28350 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3275082 12868756 Deval_2884 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005703664.1 3274345 R 573059 CDS YP_005703665.1 387154729 12868757 3275314..3275934 1 NC_017310.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ctt:CtCNB1_4571 heat shock protein; hypothetical protein 3275934 12868757 Deval_2885 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703665.1 3275314 D 573059 CDS YP_005703666.1 387154730 12868758 3276457..3277053 1 NC_017310.1 PFAM: Paraquat-inducible protein A; KEGG: dba:Dbac_0330 paraquat-inducible protein A; Paraquat-inducible protein A 3277053 12868758 Deval_2886 Desulfovibrio vulgaris RCH1 Paraquat-inducible protein A YP_005703666.1 3276457 D 573059 CDS YP_005703667.1 387154731 12868759 3277050..3277688 1 NC_017310.1 PFAM: Paraquat-inducible protein A; KEGG: dba:Dbac_0329 paraquat-inducible protein A; Paraquat-inducible protein A 3277688 12868759 Deval_2887 Desulfovibrio vulgaris RCH1 Paraquat-inducible protein A YP_005703667.1 3277050 D 573059 CDS YP_005703668.1 387154732 12868760 3277678..3279309 1 NC_017310.1 PFAM: Mammalian cell entry related domain protein; KEGG: dba:Dbac_0328 mammalian cell entry related domain protein; Mammalian cell entry related domain-containing protein 3279309 12868760 Deval_2888 Desulfovibrio vulgaris RCH1 Mammalian cell entry related domain-containing protein YP_005703668.1 3277678 D 573059 CDS YP_005703669.1 387154733 12868761 3279299..3279916 1 NC_017310.1 PFAM: protein of unknown function DUF330; KEGG: dba:Dbac_0327 protein of unknown function DUF330; hypothetical protein 3279916 12868761 Deval_2889 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703669.1 3279299 D 573059 CDS YP_005703670.1 387154734 12868762 3280565..3281512 1 NC_017310.1 PFAM: sugar-binding domain-containing protein; KEGG: dde:Dde_0407 transcriptional regulator, putative; DeoR family transcriptional regulator 3281512 12868762 Deval_2890 Desulfovibrio vulgaris RCH1 DeoR family transcriptional regulator YP_005703670.1 3280565 D 573059 CDS YP_005703671.1 387154735 12868763 3281509..3283149 1 NC_017310.1 KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 3283149 12868763 Deval_2891 Desulfovibrio vulgaris RCH1 glycerol-3-phosphate dehydrogenase YP_005703671.1 3281509 D 573059 CDS YP_005703672.1 387154736 12868764 3283257..3284012 1 NC_017310.1 PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein; major intrinsic protein 3284012 12868764 Deval_2892 Desulfovibrio vulgaris RCH1 major intrinsic protein YP_005703672.1 3283257 D 573059 CDS YP_005703673.1 387154737 12868765 3284159..3285652 1 NC_017310.1 KEGG: dma:DMR_27730 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; glycerol kinase 3285652 12868765 Deval_2893 Desulfovibrio vulgaris RCH1 glycerol kinase YP_005703673.1 3284159 D 573059 CDS YP_005703674.1 387154738 12868766 complement(3285915..3286523) 1 NC_017310.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_1618 flavodoxin-like fold domain-containing protein; NAD(P)H dehydrogenase (quinone) 3286523 12868766 Deval_2894 Desulfovibrio vulgaris RCH1 NAD(P)H dehydrogenase (quinone) YP_005703674.1 3285915 R 573059 CDS YP_005703675.1 387154739 12868767 complement(3286579..3287235) 1 NC_017310.1 PFAM: nitroreductase; KEGG: dde:Dde_2199 nitroreductase family protein; nitroreductase 3287235 12868767 Deval_2895 Desulfovibrio vulgaris RCH1 nitroreductase YP_005703675.1 3286579 R 573059 CDS YP_005703676.1 387154740 12868768 3287863..3288639 1 NC_017310.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rru:Rru_A3017 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 3288639 12868768 Deval_2896 Desulfovibrio vulgaris RCH1 short-chain dehydrogenase/reductase SDR YP_005703676.1 3287863 D 573059 CDS YP_005703677.1 387154741 12868769 3289565..3290341 1 NC_017310.1 KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 3290341 12868769 Deval_2897 Desulfovibrio vulgaris RCH1 family 3 extracellular solute-binding protein YP_005703677.1 3289565 D 573059 CDS YP_005703678.1 387154742 12868771 complement(3290756..3292369) 1 NC_017310.1 PFAM: polysaccharide export protein; KEGG: dds:Ddes_1826 polysaccharide export protein; polysaccharide export protein 3292369 12868771 Deval_2898 Desulfovibrio vulgaris RCH1 polysaccharide export protein YP_005703678.1 3290756 R 573059 CDS YP_005703679.1 387154743 12868772 complement(3292656..3293036) 1 NC_017310.1 KEGG: dds:Ddes_1825 putative lipoprotein; putative lipoprotein 3293036 12868772 Deval_2899 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005703679.1 3292656 R 573059 CDS YP_005703680.1 387154744 12868773 complement(3293260..3294963) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; KEGG: dde:Dde_0659 Fis family transcriptional regulator; SMART: AAA ATPase; PAS domain containing protein; PAC repeat-containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 3294963 12868773 Deval_2900 Desulfovibrio vulgaris RCH1 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_005703680.1 3293260 R 573059 CDS YP_005703681.1 387154745 12868774 3295265..3296854 1 NC_017310.1 KEGG: dds:Ddes_0544 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 3296854 12868774 Deval_2901 Desulfovibrio vulgaris RCH1 iron-sulfur cluster-binding protein YP_005703681.1 3295265 D 573059 CDS YP_005703682.1 387154746 12868775 3296884..3298512 1 NC_017310.1 KEGG: drt:Dret_0167 cytochrome c family protein; cytochrome c family protein 3298512 12868775 Deval_2902 Desulfovibrio vulgaris RCH1 cytochrome c family protein YP_005703682.1 3296884 D 573059 CDS YP_005703683.1 387154747 12868776 3298522..3299130 1 NC_017310.1 KEGG: drt:Dret_0166 cytochrome b561; cytochrome b561 3299130 12868776 Deval_2903 Desulfovibrio vulgaris RCH1 cytochrome b561 YP_005703683.1 3298522 D 573059 CDS YP_005703684.1 387154748 12868777 complement(3299682..3300230) 1 NC_017310.1 KEGG: mav:MAV_2777 acyl-CoA synthetase; hypothetical protein 3300230 12868777 Deval_2904 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703684.1 3299682 R 573059 CDS YP_005703685.1 387154749 12868778 complement(3300596..3301804) 1 NC_017310.1 PFAM: Phosphoglycerate mutase; 6-phosphofructo-2-kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase; phosphoglycerate mutase 3301804 12868778 Deval_2905 Desulfovibrio vulgaris RCH1 phosphoglycerate mutase YP_005703685.1 3300596 R 573059 CDS YP_005703686.1 387154750 12868780 complement(3302147..3303658) 1 NC_017310.1 TIGRFAM: 4-alpha-glucanotransferase; KEGG: dde:Dde_0510 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 3303658 12868780 Deval_2906 Desulfovibrio vulgaris RCH1 4-alpha-glucanotransferase YP_005703686.1 3302147 R 573059 CDS YP_005703687.1 387154751 12868781 complement(3303867..3304757) 1 NC_017310.1 KEGG: dde:Dde_0508 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 3304757 12868781 Deval_2907 Desulfovibrio vulgaris RCH1 signal peptide peptidase SppA, 36K type YP_005703687.1 3303867 R 573059 CDS YP_005703688.1 387154752 12868782 complement(3304741..3306474) 1 NC_017310.1 KEGG: dde:Dde_0507 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; 30S ribosomal protein S1 3306474 12868782 Deval_2908 Desulfovibrio vulgaris RCH1 30S ribosomal protein S1 YP_005703688.1 3304741 R 573059 CDS YP_005703689.1 387154753 12868783 complement(3306689..3307981) 1 NC_017310.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; KEGG: dde:Dde_0506 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 3307981 12868783 Deval_2909 Desulfovibrio vulgaris RCH1 MiaB-like tRNA modifying enzyme YliG YP_005703689.1 3306689 R 573059 CDS YP_005703690.1 387154754 12868784 3308060..3309721 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0505 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase 3309721 12868784 Deval_2910 Desulfovibrio vulgaris RCH1 PAS/PAC sensor signal transduction histidine kinase YP_005703690.1 3308060 D 573059 CDS YP_005703691.1 387154755 12868785 3310273..3310896 1 NC_017310.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; KEGG: dde:Dde_0504 putative deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1 family protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 3310896 12868785 Deval_2911 Desulfovibrio vulgaris RCH1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_005703691.1 3310273 D 573059 CDS YP_005703692.1 387154756 12868786 3311372..3314263 1 NC_017310.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_0458 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 3314263 12868786 Deval_2912 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer YP_005703692.1 3311372 D 573059 CDS YP_005703693.1 387154757 12868787 3314326..3314637 1 NC_017310.1 KEGG: rru:Rru_A1213 2-oxoglutarate dehydrogenase E1 component; hypothetical protein 3314637 12868787 Deval_2913 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703693.1 3314326 D 573059 CDS YP_005703694.1 387154758 12868788 3314753..3316576 1 NC_017310.1 KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; glucosamine/fructose-6-phosphate aminotransferase 3316576 12868788 Deval_2914 Desulfovibrio vulgaris RCH1 glucosamine/fructose-6-phosphate aminotransferase YP_005703694.1 3314753 D 573059 CDS YP_005703695.1 387154759 12868789 3316865..3318307 1 NC_017310.1 KEGG: dsa:Desal_0972 hypothetical protein; hypothetical protein 3318307 12868789 Deval_2915 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703695.1 3316865 D 573059 CDS YP_005703696.1 387154760 12868790 3318304..3319191 1 NC_017310.1 PFAM: VacJ family lipoprotein; KEGG: dba:Dbac_2657 VacJ family lipoprotein; VacJ family lipoprotein 3319191 12868790 Deval_2916 Desulfovibrio vulgaris RCH1 VacJ family lipoprotein YP_005703696.1 3318304 D 573059 CDS YP_005703697.1 387154761 12868791 complement(3319312..3320304) 1 NC_017310.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: dde:Dde_3178 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 3320304 12868791 Deval_2917 Desulfovibrio vulgaris RCH1 NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein YP_005703697.1 3319312 R 573059 CDS YP_005703698.1 387154762 12868792 3320596..3321645 1 NC_017310.1 KEGG: lip:LI0076 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; ABC transporter 3321645 12868792 Deval_2918 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703698.1 3320596 D 573059 CDS YP_005703699.1 387154763 12868793 3321748..3323043 1 NC_017310.1 PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 extracellular solute-binding protein; extracellular solute-binding protein 3323043 12868793 Deval_2919 Desulfovibrio vulgaris RCH1 extracellular solute-binding protein YP_005703699.1 3321748 D 573059 CDS YP_005703700.1 387154764 12868794 3323117..3323998 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system; binding-protein-dependent transport system inner membrane protein 3323998 12868794 Deval_2920 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005703700.1 3323117 D 573059 CDS YP_005703701.1 387154765 12868795 3323995..3324828 1 NC_017310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2657 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3324828 12868795 Deval_2921 Desulfovibrio vulgaris RCH1 binding-protein-dependent transport system inner membrane protein YP_005703701.1 3323995 D 573059 CDS YP_005703702.1 387154766 12868796 3324835..3325695 1 NC_017310.1 KEGG: dma:DMR_44460 hypothetical protein; hypothetical protein 3325695 12868796 Deval_2922 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703702.1 3324835 D 573059 CDS YP_005703703.1 387154767 12868797 3325748..3326404 1 NC_017310.1 KEGG: rru:Rru_A2969 alanyl-tRNA synthetase related protein; manually curated; SMART: Threonyl/alanyl tRNA synthetase SAD; threonyl/alanyl tRNA synthetase SAD 3326404 12868797 Deval_2923 Desulfovibrio vulgaris RCH1 threonyl/alanyl tRNA synthetase SAD YP_005703703.1 3325748 D 573059 CDS YP_005703704.1 387154768 12868798 3326498..3326980 1 NC_017310.1 SMART: Transcription regulator AsnC-type; KEGG: dde:Dde_3179 AsnC family transcriptional regulator; AsnC family transcriptional regulator 3326980 12868798 Deval_2924 Desulfovibrio vulgaris RCH1 AsnC family transcriptional regulator YP_005703704.1 3326498 D 573059 CDS YP_005703705.1 387154769 12868799 3327048..3328319 1 NC_017310.1 KEGG: dde:Dde_3180 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; glutamate-1-semialdehyde-2,1-aminomutase 3328319 12868799 Deval_2925 Desulfovibrio vulgaris RCH1 glutamate-1-semialdehyde-2,1-aminomutase YP_005703705.1 3327048 D 573059 CDS YP_005703706.1 387154770 12868800 3328440..3329636 1 NC_017310.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dma:DMR_02540 cobalamin biosynthesis protein CbiG; cobalamin (vitamin B12) biosynthesis protein CbiG 3329636 12868800 Deval_2926 Desulfovibrio vulgaris RCH1 cobalamin (vitamin B12) biosynthesis protein CbiG YP_005703706.1 3328440 D 573059 CDS YP_005703707.1 387154771 12868801 3329929..3330783 1 NC_017310.1 KEGG: dde:Dde_3181 precorrin-3 methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-3B C(17)-methyltransferase 3330783 12868801 Deval_2927 Desulfovibrio vulgaris RCH1 precorrin-3B C(17)-methyltransferase YP_005703707.1 3329929 D 573059 CDS YP_005703708.1 387154772 12868802 3331067..3331456 1 NC_017310.1 PFAM: Cytochrome c, class III, conserved region; KEGG: dde:Dde_3182 cytochrome c3; cytochrome c, class III, conserved region 3331456 12868802 Deval_2928 Desulfovibrio vulgaris RCH1 cytochrome c, class III, conserved region YP_005703708.1 3331067 D 573059 CDS YP_005703709.1 387154773 12868803 3331634..3333649 1 NC_017310.1 KEGG: dde:Dde_3183 hypothetical protein; hypothetical protein 3333649 12868803 Deval_2929 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703709.1 3331634 D 573059 CDS YP_005703710.1 387154774 12868804 3333845..3334021 1 NC_017310.1 KEGG: dde:Dde_3184 hypothetical protein; hypothetical protein 3334021 12868804 Deval_2930 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703710.1 3333845 D 573059 CDS YP_005703711.1 387154775 12868805 3334018..3334794 1 NC_017310.1 KEGG: dde:Dde_3185 demethylmenaquinone methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 3334794 12868805 Deval_2931 Desulfovibrio vulgaris RCH1 ubiquinone/menaquinone biosynthesis methyltransferase YP_005703711.1 3334018 D 573059 CDS YP_005703712.1 387154776 12868806 complement(3335061..3335264) 1 NC_017310.1 PFAM: Protein of unknown function DUF2065; KEGG: dsa:Desal_0760 hypothetical protein; hypothetical protein 3335264 12868806 Deval_2932 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703712.1 3335061 R 573059 CDS YP_005703713.1 387154777 12868807 3335398..3336720 1 NC_017310.1 KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 3336720 12868807 Deval_2933 Desulfovibrio vulgaris RCH1 nucleotide sugar dehydrogenase YP_005703713.1 3335398 D 573059 CDS YP_005703714.1 387154778 12868808 3336836..3336964 1 NC_017310.1 KEGG: mlu:Mlut_05980 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 3336964 12868808 Deval_2934 Desulfovibrio vulgaris RCH1 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_005703714.1 3336836 D 573059 CDS YP_005703715.1 387154779 12868809 3336961..3337671 1 NC_017310.1 KEGG: dde:Dde_3188 hypothetical protein; TIGRFAM: futalosine nucleosidase; PFAM: purine or other phosphorylase family 1; futalosine nucleosidase 3337671 12868809 Deval_2935 Desulfovibrio vulgaris RCH1 futalosine nucleosidase YP_005703715.1 3336961 D 573059 CDS YP_005703716.1 387154780 12868810 3337692..3338657 1 NC_017310.1 PFAM: Polyprenyl synthetase; KEGG: dde:Dde_3189 trans-hexaprenyltranstransferase; polyprenyl synthetase 3338657 12868810 Deval_2936 Desulfovibrio vulgaris RCH1 polyprenyl synthetase YP_005703716.1 3337692 D 573059 CDS YP_005703717.1 387154781 12868811 3338689..3341190 1 NC_017310.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; PAS fold domain protein; KEGG: dde:Dde_3190 diguanylate cyclase; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 3341190 12868811 Deval_2937 Desulfovibrio vulgaris RCH1 PAS/PAC sensor-containing diguanylate cyclase YP_005703717.1 3338689 D 573059 CDS YP_005703718.1 387154782 12868812 3341276..3344257 1 NC_017310.1 KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; Phosphoribosylformylglycinamidine synthase 3344257 12868812 Deval_2938 Desulfovibrio vulgaris RCH1 Phosphoribosylformylglycinamidine synthase YP_005703718.1 3341276 D 573059 CDS YP_005703719.1 387154783 12868813 3344719..3346728 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: dma:DMR_35850 methyl-accepting chemotaxis protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3346728 12868813 Deval_2939 Desulfovibrio vulgaris RCH1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_005703719.1 3344719 D 573059 CDS YP_005703720.1 387154784 12868814 3347069..3347449 1 NC_017310.1 KEGG: dds:Ddes_2010 desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; desulfoferrodoxin 3347449 12868814 Deval_2940 Desulfovibrio vulgaris RCH1 desulfoferrodoxin YP_005703720.1 3347069 D 573059 CDS YP_005703721.1 387154785 12868815 3347466..3347624 1 NC_017310.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3194 rubredoxin; rubredoxin-type Fe(Cys)4 protein 3347624 12868815 Deval_2941 Desulfovibrio vulgaris RCH1 rubredoxin-type Fe(Cys)4 protein YP_005703721.1 3347466 D 573059 CDS YP_005703722.1 387154786 12868816 3347756..3348964 1 NC_017310.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase; flavodoxin/nitric oxide synthase 3348964 12868816 Deval_2942 Desulfovibrio vulgaris RCH1 flavodoxin/nitric oxide synthase YP_005703722.1 3347756 D 573059 CDS YP_005703723.1 387154787 12868817 complement(3349292..3349978) 1 NC_017310.1 KEGG: dds:Ddes_0020 hypothetical protein; hypothetical protein 3349978 12868817 Deval_2943 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703723.1 3349292 R 573059 CDS YP_005703724.1 387154788 12868818 3350188..3350475 1 NC_017310.1 KEGG: dde:Dde_0125 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 3350475 12868818 Deval_2944 Desulfovibrio vulgaris RCH1 histone family protein DNA-binding protein YP_005703724.1 3350188 D 573059 CDS YP_005703725.1 387154789 12868819 complement(3350624..3351334) 1 NC_017310.1 PFAM: NLP/P60 protein; KEGG: dds:Ddes_0021 NLP/P60 protein; NLP/P60 protein 3351334 12868819 Deval_2945 Desulfovibrio vulgaris RCH1 NLP/P60 protein YP_005703725.1 3350624 R 573059 CDS YP_005703726.1 387154790 12868820 complement(3351406..3352701) 1 NC_017310.1 PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein; Fmu (Sun) domain-containing protein 3352701 12868820 Deval_2946 Desulfovibrio vulgaris RCH1 Fmu (Sun) domain-containing protein YP_005703726.1 3351406 R 573059 CDS YP_005703727.1 387154791 12867369 3352833..3354500 1 NC_017310.1 KEGG: dde:Dde_0121 hypothetical protein; hypothetical protein 3354500 12867369 Deval_2947 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703727.1 3352833 D 573059 CDS YP_005703728.1 387154792 12867370 3354578..3355750 1 NC_017310.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dds:Ddes_1476 pseudouridine synthase; pseudouridine synthase 3355750 12867370 Deval_2948 Desulfovibrio vulgaris RCH1 pseudouridine synthase YP_005703728.1 3354578 D 573059 CDS YP_005703729.1 387154793 12867371 3355747..3356907 1 NC_017310.1 PFAM: glycosyl transferase group 1; KEGG: dsa:Desal_2046 glycosyl transferase group 1; group 1 glycosyl transferase 3356907 12867371 Deval_2949 Desulfovibrio vulgaris RCH1 group 1 glycosyl transferase YP_005703729.1 3355747 D 573059 CDS YP_005703730.1 387154794 12867372 complement(3357157..3358068) 1 NC_017310.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding; excisionase family DNA binding domain-containing protein 3358068 12867372 Deval_2950 Desulfovibrio vulgaris RCH1 excisionase family DNA binding domain-containing protein YP_005703730.1 3357157 R 573059 CDS YP_005703731.1 387154795 12867373 3358323..3359798 1 NC_017310.1 KEGG: dde:Dde_0062 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; ribosome-associated GTPase EngA 3359798 12867373 Deval_2951 Desulfovibrio vulgaris RCH1 ribosome-associated GTPase EngA YP_005703731.1 3358323 D 573059 CDS YP_005703732.1 387154796 12867374 complement(3359883..3361271) 1 NC_017310.1 KEGG: dds:Ddes_1878 putative lipoprotein; putative lipoprotein 3361271 12867374 Deval_2952 Desulfovibrio vulgaris RCH1 putative lipoprotein YP_005703732.1 3359883 R 573059 CDS YP_005703733.1 387154797 12867375 complement(3361268..3362419) 1 NC_017310.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: lip:LI0914 D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 3362419 12867375 Deval_2953 Desulfovibrio vulgaris RCH1 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_005703733.1 3361268 R 573059 CDS YP_005703734.1 387154798 12867376 3362700..3363623 1 NC_017310.1 KEGG: dde:Dde_0065 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase 3363623 12867376 Deval_2954 Desulfovibrio vulgaris RCH1 branched-chain amino acid aminotransferase YP_005703734.1 3362700 D 573059 CDS YP_005703735.1 387154799 12867377 3363778..3365628 1 NC_017310.1 TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; KEGG: dde:Dde_0066 DNA polymerase III, tau subunit; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 3365628 12867377 Deval_2955 Desulfovibrio vulgaris RCH1 DNA polymerase III subunits gamma and tau YP_005703735.1 3363778 D 573059 CDS YP_005703736.1 387154800 12867378 3365625..3365936 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0133; KEGG: dds:Ddes_2146 hypothetical protein; hypothetical protein 3365936 12867378 Deval_2956 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703736.1 3365625 D 573059 CDS YP_005703737.1 387154801 12867379 3365947..3366552 1 NC_017310.1 KEGG: dde:Dde_0068 DNA replication and repair protein RecR; TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; recombination protein RecR 3366552 12867379 Deval_2957 Desulfovibrio vulgaris RCH1 recombination protein RecR YP_005703737.1 3365947 D 573059 CDS YP_005703738.1 387154802 12867380 3366955..3368016 1 NC_017310.1 KEGG: dde:Dde_0075 hypothetical protein; hypothetical protein 3368016 12867380 Deval_2958 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703738.1 3366955 D 573059 CDS YP_005703739.1 387154803 12867381 3368254..3369090 1 NC_017310.1 KEGG: dde:Dde_0074 TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 3369090 12867381 Deval_2959 Desulfovibrio vulgaris RCH1 TatD family hydrolase YP_005703739.1 3368254 D 573059 CDS YP_005703740.1 387154804 12867382 complement(3369405..3370367) 1 NC_017310.1 KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit, putative; DNA polymerase III subunit delta' 3370367 12867382 Deval_2960 Desulfovibrio vulgaris RCH1 DNA polymerase III subunit delta' YP_005703740.1 3369405 R 573059 CDS YP_005703741.1 387154805 12867383 complement(3370374..3371654) 1 NC_017310.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: dde:Dde_0176 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; adenylosuccinate synthetase 3371654 12867383 Deval_2961 Desulfovibrio vulgaris RCH1 adenylosuccinate synthetase YP_005703741.1 3370374 R 573059 CDS YP_005703742.1 387154806 12867384 3371897..3373342 1 NC_017310.1 PFAM: Lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain-containing protein; lytic transglycosylase 3373342 12867384 Deval_2962 Desulfovibrio vulgaris RCH1 lytic transglycosylase YP_005703742.1 3371897 D 573059 CDS YP_005703743.1 387154807 12867385 complement(3373259..3373624) 1 NC_017310.1 KEGG: dma:DMR_03260 hypothetical protein; hypothetical protein 3373624 12867385 Deval_2963 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703743.1 3373259 R 573059 CDS YP_005703744.1 387154808 12867386 3373897..3375177 1 NC_017310.1 PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase 3375177 12867386 Deval_2964 Desulfovibrio vulgaris RCH1 phosphoribosylaminoimidazolecarboxamide formyltransferase YP_005703744.1 3373897 D 573059 CDS YP_005703745.1 387154809 12867387 3375186..3377282 1 NC_017310.1 PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein; ribonuclease II 3377282 12867387 Deval_2965 Desulfovibrio vulgaris RCH1 ribonuclease II YP_005703745.1 3375186 D 573059 CDS YP_005703746.1 387154810 12867388 3377304..3378287 1 NC_017310.1 PFAM: protein of unknown function DUF205; KEGG: dde:Dde_0172 membrane protein; hypothetical protein 3378287 12867388 Deval_2966 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703746.1 3377304 D 573059 CDS YP_005703747.1 387154811 12867389 3378420..3379868 1 NC_017310.1 KEGG: dde:Dde_0171 L-threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 3379868 12867389 Deval_2967 Desulfovibrio vulgaris RCH1 threonine synthase YP_005703747.1 3378420 D 573059 CDS YP_005703748.1 387154812 12867390 3380841..3382550 1 NC_017310.1 KEGG: dde:Dde_0374 rhodanese-like protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3382550 12867390 Deval_2968 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005703748.1 3380841 D 573059 CDS YP_005703749.1 387154813 12867391 3382937..3383155 1 NC_017310.1 KEGG: ptr:460375 bassoon (presynaptic cytomatrix protein); hypothetical protein 3383155 12867391 Deval_2969 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703749.1 3382937 D 573059 CDS YP_005703750.1 387154814 12867392 complement(3383423..3386077) 1 NC_017310.1 KEGG: dds:Ddes_1565 pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; pyruvate, water dikinase 3386077 12867392 Deval_2970 Desulfovibrio vulgaris RCH1 pyruvate, water dikinase YP_005703750.1 3383423 R 573059 CDS YP_005703751.1 387154815 12867393 complement(3386094..3386459) 1 NC_017310.1 KEGG: dds:Ddes_1566 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3386459 12867393 Deval_2971 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703751.1 3386094 R 573059 CDS YP_005703752.1 387154816 12867394 complement(3386477..3388174) 1 NC_017310.1 KEGG: dds:Ddes_1567 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; integral membrane sensor signal transduction histidine kinase 3388174 12867394 Deval_2972 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005703752.1 3386477 R 573059 CDS YP_005703753.1 387154817 12867395 complement(3388860..3389288) 1 NC_017310.1 KEGG: drt:Dret_1987 hypothetical protein; hypothetical protein 3389288 12867395 Deval_2973 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703753.1 3388860 R 573059 CDS YP_005703754.1 387154818 12867396 complement(3389540..3390160) 1 NC_017310.1 PFAM: isochorismatase hydrolase; KEGG: gur:Gura_1197 isochorismatase hydrolase; isochorismatase hydrolase 3390160 12867396 Deval_2974 Desulfovibrio vulgaris RCH1 isochorismatase hydrolase YP_005703754.1 3389540 R 573059 CDS YP_005703755.1 387154819 12867397 complement(3390196..3391398) 1 NC_017310.1 KEGG: dsa:Desal_3086 hypothetical protein; hypothetical protein 3391398 12867397 Deval_2975 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703755.1 3390196 R 573059 CDS YP_005703756.1 387154820 12867398 complement(3391469..3392848) 1 NC_017310.1 KEGG: dds:Ddes_0853 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 3392848 12867398 Deval_2976 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005703756.1 3391469 R 573059 CDS YP_005703757.1 387154821 12867399 complement(3392845..3394398) 1 NC_017310.1 KEGG: dds:Ddes_0852 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 3394398 12867399 Deval_2977 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005703757.1 3392845 R 573059 CDS YP_005703758.1 387154822 12867400 complement(3394399..3395742) 1 NC_017310.1 PFAM: phosphoglucose isomerase (PGI); KEGG: dde:Dde_3597 glucose-6-phosphate isomerase; phosphoglucose isomerase 3395742 12867400 Deval_2978 Desulfovibrio vulgaris RCH1 phosphoglucose isomerase YP_005703758.1 3394399 R 573059 CDS YP_005703759.1 387154823 12867401 complement(3395829..3397001) 1 NC_017310.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase; class I and II aminotransferase 3397001 12867401 Deval_2979 Desulfovibrio vulgaris RCH1 class I and II aminotransferase YP_005703759.1 3395829 R 573059 CDS YP_005703760.1 387154824 12867402 3397241..3397996 1 NC_017310.1 KEGG: dde:Dde_3594 sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; sugar fermentation stimulation protein 3397996 12867402 Deval_2980 Desulfovibrio vulgaris RCH1 sugar fermentation stimulation protein YP_005703760.1 3397241 D 573059 CDS YP_005703761.1 387154825 12867403 complement(3398036..3398458) 1 NC_017310.1 KEGG: dde:Dde_0387 hypothetical protein; hypothetical protein 3398458 12867403 Deval_2981 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703761.1 3398036 R 573059 CDS YP_005703762.1 387154826 12867404 complement(3398469..3398798) 1 NC_017310.1 KEGG: dde:Dde_0386 hypothetical protein; hypothetical protein 3398798 12867404 Deval_2982 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703762.1 3398469 R 573059 CDS YP_005703763.1 387154827 12867405 complement(3398800..3399483) 1 NC_017310.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_0385 flagellar basal body-associated protein, putative; flagellar basal body-associated protein FliL 3399483 12867405 Deval_2983 Desulfovibrio vulgaris RCH1 flagellar basal body-associated protein FliL YP_005703763.1 3398800 R 573059 CDS YP_005703764.1 387154828 12867406 complement(3399559..3399939) 1 NC_017310.1 KEGG: dde:Dde_0384 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3399939 12867406 Deval_2984 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703764.1 3399559 R 573059 CDS YP_005703765.1 387154829 12867407 complement(3399962..3400759) 1 NC_017310.1 KEGG: dds:Ddes_0325 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; FliA/WhiG subfamily RNA polymerase sigma-28 subunit 3400759 12867407 Deval_2985 Desulfovibrio vulgaris RCH1 FliA/WhiG subfamily RNA polymerase sigma-28 subunit YP_005703765.1 3399962 R 573059 CDS YP_005703766.1 387154830 12867408 complement(3400713..3401528) 1 NC_017310.1 KEGG: dde:Dde_0382 flagellar synthesis regulator FleN; flagellar synthesis regulator FleN 3401528 12867408 Deval_2986 Desulfovibrio vulgaris RCH1 flagellar synthesis regulator FleN YP_005703766.1 3400713 R 573059 CDS YP_005703767.1 387154831 12867409 complement(3401540..3402637) 1 NC_017310.1 TIGRFAM: flagellar biosynthetic protein FlhF; KEGG: dds:Ddes_0327 GTP-binding signal recognition particle SRP54 G-domain protein; flagellar biosynthetic protein FlhF 3402637 12867409 Deval_2987 Desulfovibrio vulgaris RCH1 flagellar biosynthetic protein FlhF YP_005703767.1 3401540 R 573059 CDS YP_005703768.1 387154832 12867410 complement(3402637..3404748) 1 NC_017310.1 KEGG: dde:Dde_0380 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; flagellar biosynthesis protein FlhA 3404748 12867410 Deval_2988 Desulfovibrio vulgaris RCH1 flagellar biosynthesis protein FlhA YP_005703768.1 3402637 R 573059 CDS YP_005703769.1 387154833 12867411 complement(3404824..3405897) 1 NC_017310.1 KEGG: dde:Dde_0379 flagellar biosynthesis protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; flagellar biosynthetic protein FlhB 3405897 12867411 Deval_2989 Desulfovibrio vulgaris RCH1 flagellar biosynthetic protein FlhB YP_005703769.1 3404824 R 573059 CDS YP_005703770.1 387154834 12867412 complement(3406022..3406813) 1 NC_017310.1 KEGG: dde:Dde_0378 flagellar biosynthetic protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; flagellar biosynthetic protein FliR 3406813 12867412 Deval_2990 Desulfovibrio vulgaris RCH1 flagellar biosynthetic protein FliR YP_005703770.1 3406022 R 573059 CDS YP_005703771.1 387154835 12867413 3406918..3407520 1 NC_017310.1 KEGG: dde:Dde_0377 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase 3407520 12867413 Deval_2991 Desulfovibrio vulgaris RCH1 phosphoribosylaminoimidazolecarboxamide formyltransferase YP_005703771.1 3406918 D 573059 CDS YP_005703772.1 387154836 12867414 3407886..3409529 1 NC_017310.1 KEGG: dde:Dde_0376 GTP-binding protein HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; GTP-binding proten HflX 3409529 12867414 Deval_2992 Desulfovibrio vulgaris RCH1 GTP-binding proten HflX YP_005703772.1 3407886 D 573059 CDS YP_005703773.1 387154837 12867415 complement(3410007..3412670) 1 NC_017310.1 KEGG: dds:Ddes_1568 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; pyruvate, water dikinase 3412670 12867415 Deval_2993 Desulfovibrio vulgaris RCH1 pyruvate, water dikinase YP_005703773.1 3410007 R 573059 CDS YP_005703774.1 387154838 12867416 complement(3412708..3413112) 1 NC_017310.1 KEGG: dds:Ddes_0018 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3413112 12867416 Deval_2994 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703774.1 3412708 R 573059 CDS YP_005703775.1 387154839 12867417 complement(3413337..3414002) 1 NC_017310.1 KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; phosphoesterase PA-phosphatase-like protein 3414002 12867417 Deval_2995 Desulfovibrio vulgaris RCH1 phosphoesterase PA-phosphatase-like protein YP_005703775.1 3413337 R 573059 CDS YP_005703776.1 387154840 12867418 complement(3414020..3414925) 1 NC_017310.1 PFAM: Peptidase M23; KEGG: dde:Dde_0243 M24/M37 family peptidase; peptidase M23 3414925 12867418 Deval_2996 Desulfovibrio vulgaris RCH1 peptidase M23 YP_005703776.1 3414020 R 573059 CDS YP_005703777.1 387154841 12867419 complement(3415023..3415769) 1 NC_017310.1 PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein; PP-loop domain-containing protein 3415769 12867419 Deval_2997 Desulfovibrio vulgaris RCH1 PP-loop domain-containing protein YP_005703777.1 3415023 R 573059 CDS YP_005703778.1 387154842 12867420 3416172..3416405 1 NC_017310.1 KEGG: dds:Ddes_2161 DNA-directed RNA polymerase, omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega 3416405 12867420 Deval_2998 Desulfovibrio vulgaris RCH1 DNA-directed RNA polymerase subunit omega YP_005703778.1 3416172 D 573059 CDS YP_005703779.1 387154843 12867421 3416418..3417548 1 NC_017310.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; KEGG: dde:Dde_0248 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ 3417548 12867421 Deval_2999 Desulfovibrio vulgaris RCH1 chaperone protein DnaJ YP_005703779.1 3416418 D 573059 CDS YP_005703780.1 387154844 12867422 3417925..3418416 1 NC_017310.1 KEGG: lip:LI0307 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; GreA/GreB family elongation factor 3418416 12867422 Deval_3000 Desulfovibrio vulgaris RCH1 GreA/GreB family elongation factor YP_005703780.1 3417925 D 573059 CDS YP_005703781.1 387154845 12867423 3418933..3420558 1 NC_017310.1 KEGG: sfu:Sfum_3923 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 3420558 12867423 Deval_3001 Desulfovibrio vulgaris RCH1 NodT family RND efflux system outer membrane lipoprotein YP_005703781.1 3418933 D 573059 CDS YP_005703782.1 387154846 12867424 3420600..3421769 1 NC_017310.1 KEGG: sfu:Sfum_3921 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3421769 12867424 Deval_3002 Desulfovibrio vulgaris RCH1 RND family efflux transporter MFP subunit YP_005703782.1 3420600 D 573059 CDS YP_005703783.1 387154847 12867425 3421798..3424941 1 NC_017310.1 KEGG: sfu:Sfum_3922 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3424941 12867425 Deval_3003 Desulfovibrio vulgaris RCH1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_005703783.1 3421798 D 573059 CDS YP_005703784.1 387154848 12867426 3424949..3425629 1 NC_017310.1 KEGG: swd:Swoo_0689 hypothetical protein; hypothetical protein 3425629 12867426 Deval_3004 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703784.1 3424949 D 573059 CDS YP_005703785.1 387154849 12867428 complement(3426242..3426943) 1 NC_017310.1 KEGG: dde:Dde_3553 hypothetical protein; hypothetical protein 3426943 12867428 Deval_3005 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703785.1 3426242 R 573059 CDS YP_005703786.1 387154850 12867429 complement(3427294..3427833) 1 NC_017310.1 PFAM: HPP family protein; KEGG: dma:DMR_12600 hypothetical membrane protein; HPP family protein 3427833 12867429 Deval_3006 Desulfovibrio vulgaris RCH1 HPP family protein YP_005703786.1 3427294 R 573059 CDS YP_005703787.1 387154851 12867430 3428183..3429448 1 NC_017310.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase, putative; AMP-dependent synthetase and ligase 3429448 12867430 Deval_3007 Desulfovibrio vulgaris RCH1 AMP-dependent synthetase and ligase YP_005703787.1 3428183 D 573059 CDS YP_005703788.1 387154852 12867431 3429439..3430803 1 NC_017310.1 KEGG: dma:DMR_16980 hypothetical protein; PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein; hypothetical protein 3430803 12867431 Deval_3008 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703788.1 3429439 D 573059 CDS YP_005703789.1 387154853 12867432 3430839..3431237 1 NC_017310.1 PFAM: Uncharacterised protein family UPF0150; KEGG: ccs:CCNA_03289 hypothetical protein; hypothetical protein 3431237 12867432 Deval_3009 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703789.1 3430839 D 573059 CDS YP_005703790.1 387154854 12867433 3431333..3432430 1 NC_017310.1 TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; formamidopyrimidine-DNA glycosylase 3432430 12867433 Deval_3010 Desulfovibrio vulgaris RCH1 formamidopyrimidine-DNA glycosylase YP_005703790.1 3431333 D 573059 CDS YP_005703791.1 387154855 12867434 complement(3432702..3435581) 1 NC_017310.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dds:Ddes_1798 ComEC/Rec2-related protein; SMART: beta-lactamase domain protein; ComEC/Rec2-like protein 3435581 12867434 Deval_3011 Desulfovibrio vulgaris RCH1 ComEC/Rec2-like protein YP_005703791.1 3432702 R 573059 CDS YP_005703792.1 387154856 12867435 complement(3435760..3437013) 1 NC_017310.1 KEGG: dde:Dde_0546 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3437013 12867435 Deval_3012 Desulfovibrio vulgaris RCH1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_005703792.1 3435760 R 573059 CDS YP_005703793.1 387154857 12867439 3437965..3438738 1 NC_017310.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: dde:Dde_0551 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 3438738 12867439 Deval_3014 Desulfovibrio vulgaris RCH1 exodeoxyribonuclease III YP_005703793.1 3437965 D 573059 CDS YP_005703794.1 387154858 12867440 complement(3439001..3439195) 1 NC_017310.1 KEGG: dde:Dde_0552 hypothetical protein; hypothetical protein 3439195 12867440 Deval_3015 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703794.1 3439001 R 573059 CDS YP_005703795.1 387154859 12867441 3439460..3440110 1 NC_017310.1 KEGG: dba:Dbac_3066 fumarate reductase respiratory complex transmembrane subunit; fumarate reductase respiratory complex transmembrane subunit 3440110 12867441 Deval_3016 Desulfovibrio vulgaris RCH1 fumarate reductase respiratory complex transmembrane subunit YP_005703795.1 3439460 D 573059 CDS YP_005703796.1 387154860 12867442 3440120..3441958 1 NC_017310.1 TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: dma:DMR_34280 fumarate reductase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 3441958 12867442 Deval_3017 Desulfovibrio vulgaris RCH1 succinate dehydrogenase or fumarate reductase, flavoprotein subunit YP_005703796.1 3440120 D 573059 CDS YP_005703797.1 387154861 12867443 3441961..3442704 1 NC_017310.1 KEGG: dma:DMR_05780 fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 3442704 12867443 Deval_3018 Desulfovibrio vulgaris RCH1 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_005703797.1 3441961 D 573059 CDS YP_005703798.1 387154862 12867444 3443090..3443929 1 NC_017310.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: dma:DMR_34300 L-tartrate dehydratase alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 3443929 12867444 Deval_3019 Desulfovibrio vulgaris RCH1 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha YP_005703798.1 3443090 D 573059 CDS YP_005703799.1 387154863 12867445 3443929..3444480 1 NC_017310.1 KEGG: dma:DMR_34310 L-tartrate dehydratase beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 3444480 12867445 Deval_3020 Desulfovibrio vulgaris RCH1 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta YP_005703799.1 3443929 D 573059 CDS YP_005703800.1 387154864 12867447 complement(3444744..3445556) 1 NC_017310.1 KEGG: dde:Dde_3063 hypothetical protein; hypothetical protein 3445556 12867447 Deval_3021 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703800.1 3444744 R 573059 CDS YP_005703801.1 387154865 12867448 3445586..3446197 1 NC_017310.1 KEGG: dde:Dde_1333 hypothetical protein; hypothetical protein 3446197 12867448 Deval_3022 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703801.1 3445586 D 573059 CDS YP_005703802.1 387154866 12867449 3446278..3447540 1 NC_017310.1 KEGG: dde:Dde_0554 hypothetical protein; hypothetical protein 3447540 12867449 Deval_3023 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703802.1 3446278 D 573059 CDS YP_005703803.1 387154867 12867450 3447668..3450187 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dba:Dbac_1221 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 3450187 12867450 Deval_3024 Desulfovibrio vulgaris RCH1 PAS/PAC sensor hybrid histidine kinase YP_005703803.1 3447668 D 573059 CDS YP_005703804.1 387154868 12867451 complement(3450448..3451473) 1 NC_017310.1 KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 3451473 12867451 Deval_3025 Desulfovibrio vulgaris RCH1 cytochrome d ubiquinol oxidase, subunit II YP_005703804.1 3450448 R 573059 CDS YP_005703805.1 387154869 12867452 complement(3451519..3452820) 1 NC_017310.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 3452820 12867452 Deval_3026 Desulfovibrio vulgaris RCH1 cytochrome bd ubiquinol oxidase subunit I YP_005703805.1 3451519 R 573059 CDS YP_005703806.1 387154870 12867453 complement(3453371..3453994) 1 NC_017310.1 KEGG: dde:Dde_3772 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 3453994 12867453 Deval_3027 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703806.1 3453371 R 573059 CDS YP_005703807.1 387154871 12867454 complement(3453978..3454370) 1 NC_017310.1 KEGG: dde:Dde_3773 hypothetical protein; hypothetical protein 3454370 12867454 Deval_3028 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703807.1 3453978 R 573059 CDS YP_005703808.1 387154872 12867455 complement(3454370..3455038) 1 NC_017310.1 KEGG: dds:Ddes_0888 protein of unknown function UPF0153; hypothetical protein 3455038 12867455 Deval_3029 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703808.1 3454370 R 573059 CDS YP_005703809.1 387154873 12867456 complement(3455289..3455477) 1 NC_017310.1 KEGG: dde:Dde_3775 ferredoxin I; ferredoxin I 3455477 12867456 Deval_3030 Desulfovibrio vulgaris RCH1 ferredoxin I YP_005703809.1 3455289 R 573059 CDS YP_005703810.1 387154874 12867457 complement(3455659..3457011) 1 NC_017310.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3776 PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF domain protein; HtrA2 peptidase 3457011 12867457 Deval_3031 Desulfovibrio vulgaris RCH1 HtrA2 peptidase YP_005703810.1 3455659 R 573059 CDS YP_005703811.1 387154875 12867458 3457357..3458430 1 NC_017310.1 TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: dde:Dde_3777 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3458430 12867458 Deval_3032 Desulfovibrio vulgaris RCH1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_005703811.1 3457357 D 573059 CDS YP_005703812.1 387154876 12867459 3458567..3459553 1 NC_017310.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dma:DMR_44920 putative ABC transporter ATP-binding protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 3459553 12867459 Deval_3033 Desulfovibrio vulgaris RCH1 oligopeptide/dipeptide ABC transporter ATPase YP_005703812.1 3458567 D 573059 CDS YP_005703813.1 387154877 12867460 3459633..3460133 1 NC_017310.1 KEGG: dde:Dde_0060 hypothetical protein; hypothetical protein 3460133 12867460 Deval_3034 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703813.1 3459633 D 573059 CDS YP_005703814.1 387154878 12867461 complement(3460371..3461270) 1 NC_017310.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: dde:Dde_0059 ADP-ribosylglycohydrolase family protein; ADP-ribosylation/Crystallin J1 3461270 12867461 Deval_3035 Desulfovibrio vulgaris RCH1 ADP-ribosylation/Crystallin J1 YP_005703814.1 3460371 R 573059 CDS YP_005703815.1 387154879 12867462 complement(3461829..3462059) 1 NC_017310.1 KEGG: pno:SNOG_00683 hypothetical protein; hypothetical protein 3462059 12867462 Deval_3036 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703815.1 3461829 R 573059 CDS YP_005703816.1 387154880 12867463 3462287..3462520 1 NC_017310.1 KEGG: dde:Dde_0096 hypothetical protein; hypothetical protein 3462520 12867463 Deval_3037 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703816.1 3462287 D 573059 CDS YP_005703817.1 387154881 12867464 complement(3462681..3464312) 1 NC_017310.1 KEGG: dma:DMR_20020 L-lactate permease; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 3464312 12867464 Deval_3038 Desulfovibrio vulgaris RCH1 L-lactate transport YP_005703817.1 3462681 R 573059 CDS YP_005703818.1 387154882 12867465 complement(3465075..3466760) 1 NC_017310.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3466760 12867465 Deval_3039 Desulfovibrio vulgaris RCH1 family 2 glycosyl transferase YP_005703818.1 3465075 R 573059 CDS YP_005703819.1 387154883 12867466 3467351..3468478 1 NC_017310.1 KEGG: dma:DMR_46020 hypothetical protein; hypothetical protein 3468478 12867466 Deval_3040 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703819.1 3467351 D 573059 CDS YP_005703820.1 387154884 12867467 3468442..3470076 1 NC_017310.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: dma:DMR_46030 glutamate synthase large subunit; ferredoxin-dependent glutamate synthase 3470076 12867467 Deval_3041 Desulfovibrio vulgaris RCH1 ferredoxin-dependent glutamate synthase YP_005703820.1 3468442 D 573059 CDS YP_005703821.1 387154885 12867468 3470155..3472485 1 NC_017310.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase alpha subunit domain protein; KEGG: dma:DMR_46040 nucleotide-disulphide oxidoreductase family protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3472485 12867468 Deval_3042 Desulfovibrio vulgaris RCH1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005703821.1 3470155 D 573059 CDS YP_005703822.1 387154886 12867469 3472893..3474536 1 NC_017310.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: hoh:Hoch_5290 thiamine pyrophosphate protein domain protein TPP-binding protein; thiamine pyrophosphate TPP-binding domain-containing protein 3474536 12867469 Deval_3043 Desulfovibrio vulgaris RCH1 thiamine pyrophosphate TPP-binding domain-containing protein YP_005703822.1 3472893 D 573059 CDS YP_005703823.1 387154887 12867470 3474554..3475948 1 NC_017310.1 PFAM: Aldehyde Dehydrogenase; KEGG: cps:CPS_3359 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 3475948 12867470 Deval_3044 Desulfovibrio vulgaris RCH1 aldehyde dehydrogenase YP_005703823.1 3474554 D 573059 CDS YP_005703824.1 387154888 12867471 complement(3476236..3476883) 1 NC_017310.1 KEGG: dde:Dde_1696 hemolysin III family channel protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; hemolysin III family channel protein 3476883 12867471 Deval_3045 Desulfovibrio vulgaris RCH1 hemolysin III family channel protein YP_005703824.1 3476236 R 573059 CDS YP_005703825.1 387154889 12867472 3477074..3477601 1 NC_017310.1 KEGG: dsa:Desal_3329 hypothetical protein; hypothetical protein 3477601 12867472 Deval_3046 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703825.1 3477074 D 573059 CDS YP_005703826.1 387154890 12867473 complement(3477629..3478888) 1 NC_017310.1 KEGG: dds:Ddes_1135 aromatic amino acid transporter; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease; aromatic amino acid transporter 3478888 12867473 Deval_3047 Desulfovibrio vulgaris RCH1 aromatic amino acid transporter YP_005703826.1 3477629 R 573059 CDS YP_005703827.1 387154891 12867474 complement(3479133..3479951) 1 NC_017310.1 KEGG: pag:PLES_47301 putative universal stress protein; hypothetical protein 3479951 12867474 Deval_3048 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703827.1 3479133 R 573059 CDS YP_005703828.1 387154892 12867475 complement(3479902..3480972) 1 NC_017310.1 PFAM: protein of unknown function DUF81; KEGG: dba:Dbac_2673 protein of unknown function DUF81; hypothetical protein 3480972 12867475 Deval_3049 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703828.1 3479902 R 573059 CDS YP_005703829.1 387154893 12867476 complement(3480986..3481279) 1 NC_017310.1 KEGG: dba:Dbac_2672 hypothetical protein; hypothetical protein 3481279 12867476 Deval_3050 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703829.1 3480986 R 573059 CDS YP_005703830.1 387154894 12867477 complement(3481341..3481883) 1 NC_017310.1 KEGG: dba:Dbac_2670 hypothetical protein; hypothetical protein 3481883 12867477 Deval_3051 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703830.1 3481341 R 573059 CDS YP_005703831.1 387154895 12867478 complement(3481904..3482083) 1 NC_017310.1 KEGG: dba:Dbac_2669 hypothetical protein; hypothetical protein 3482083 12867478 Deval_3052 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703831.1 3481904 R 573059 CDS YP_005703832.1 387154896 12867479 3482363..3484411 1 NC_017310.1 KEGG: dba:Dbac_2668 response regulator receiver protein; PFAM: response regulator receiver; AAA ATPase central domain protein; SMART: response regulator receiver; AAA ATPase; response regulator receiver protein 3484411 12867479 Deval_3053 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703832.1 3482363 D 573059 CDS YP_005703833.1 387154897 12867480 3484408..3485886 1 NC_017310.1 KEGG: dba:Dbac_2667 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 3485886 12867480 Deval_3054 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005703833.1 3484408 D 573059 CDS YP_005703834.1 387154898 12867481 3485883..3487238 1 NC_017310.1 KEGG: dba:Dbac_2666 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 3487238 12867481 Deval_3055 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005703834.1 3485883 D 573059 CDS YP_005703835.1 387154899 12867483 3487999..3488562 1 NC_017310.1 KEGG: dde:Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3488562 12867483 Deval_3056 Desulfovibrio vulgaris RCH1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005703835.1 3487999 D 573059 CDS YP_005703836.1 387154900 12867484 3488669..3489388 1 NC_017310.1 KEGG: dde:Dde_0151 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 3489388 12867484 Deval_3057 Desulfovibrio vulgaris RCH1 metallo-beta-lactamase family protein YP_005703836.1 3488669 D 573059 CDS YP_005703837.1 387154901 12867485 3489420..3489752 1 NC_017310.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: pnu:Pnuc_0446 excinuclease ABC subunit C; Excinuclease ABC C subunit domain-containing protein 3489752 12867485 Deval_3058 Desulfovibrio vulgaris RCH1 Excinuclease ABC C subunit domain-containing protein YP_005703837.1 3489420 D 573059 CDS YP_005703838.1 387154902 12867486 3489740..3491338 1 NC_017310.1 KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 3491338 12867486 Deval_3059 Desulfovibrio vulgaris RCH1 DEAD/DEAH box helicase YP_005703838.1 3489740 D 573059 CDS YP_005703839.1 387154903 12867487 3491838..3492293 1 NC_017310.1 KEGG: tmz:Tmz1t_4048 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 3492293 12867487 Deval_3060 Desulfovibrio vulgaris RCH1 heavy metal sensor signal transduction histidine kinase YP_005703839.1 3491838 D 573059 CDS YP_005703840.1 387154904 12867488 complement(3492324..3493214) 1 NC_017310.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aac:Aaci_0821 transcriptional regulator, LysR family; LysR family transcriptional regulator 3493214 12867488 Deval_3061 Desulfovibrio vulgaris RCH1 LysR family transcriptional regulator YP_005703840.1 3492324 R 573059 CDS YP_005703841.1 387154905 12867489 3493314..3493556 1 NC_017310.1 KEGG: tcr:506833.60 UV excision repair RAD23-like protein; hypothetical protein 3493556 12867489 Deval_3062 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703841.1 3493314 D 573059 CDS YP_005703842.1 387154906 12867490 complement(3493886..3495862) 1 NC_017310.1 PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase; peptidase U32 3495862 12867490 Deval_3063 Desulfovibrio vulgaris RCH1 peptidase U32 YP_005703842.1 3493886 R 573059 CDS YP_005703843.1 387154907 12867491 3496243..3497061 1 NC_017310.1 PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_0057 dihydroorotate oxidase B, electron transfer subunit; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein 3497061 12867491 Deval_3064 Desulfovibrio vulgaris RCH1 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein YP_005703843.1 3496243 D 573059 CDS YP_005703844.1 387154908 12867492 3497070..3497993 1 NC_017310.1 KEGG: dde:Dde_0056 dihydroorotate oxidase B, catalytic subunit; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; dihydroorotate dehydrogenase family protein 3497993 12867492 Deval_3065 Desulfovibrio vulgaris RCH1 dihydroorotate dehydrogenase family protein YP_005703844.1 3497070 D 573059 CDS YP_005703845.1 387154909 12867493 complement(3498177..3498347) 1 NC_017310.1 manually curated; hypothetical protein 3498347 12867493 Deval_3066 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703845.1 3498177 R 573059 CDS YP_005703846.1 387154910 12867494 3498442..3501462 1 NC_017310.1 KEGG: dde:Dde_0054 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 3501462 12867494 Deval_3067 Desulfovibrio vulgaris RCH1 delta-1-pyrroline-5-carboxylate dehydrogenase YP_005703846.1 3498442 D 573059 CDS YP_005703847.1 387154911 12867495 complement(3501721..3502137) 1 NC_017310.1 KEGG: ypp:YPDSF_1002 phage-related membrane protein; hypothetical protein 3502137 12867495 Deval_3068 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703847.1 3501721 R 573059 CDS YP_005703848.1 387154912 12867496 3502371..3502829 1 NC_017310.1 PFAM: Protein of unknown function DUF2318, membrane; KEGG: dma:DMR_19610 hypothetical protein; hypothetical protein 3502829 12867496 Deval_3069 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703848.1 3502371 D 573059 CDS YP_005703849.1 387154913 12867497 3502826..3504292 1 NC_017310.1 PFAM: protein of unknown function DUF214; KEGG: dds:Ddes_2105 protein of unknown function DUF214; hypothetical protein 3504292 12867497 Deval_3070 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703849.1 3502826 D 573059 CDS YP_005703850.1 387154914 12867498 3504467..3505177 1 NC_017310.1 KEGG: dds:Ddes_2106 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 3505177 12867498 Deval_3071 Desulfovibrio vulgaris RCH1 ABC transporter YP_005703850.1 3504467 D 573059 CDS YP_005703851.1 387154915 12867499 complement(3505569..3505901) 1 NC_017310.1 PFAM: small multidrug resistance protein; KEGG: dde:Dde_2405 SMR family multidrug efflux pump; small multidrug resistance protein 3505901 12867499 Deval_3072 Desulfovibrio vulgaris RCH1 small multidrug resistance protein YP_005703851.1 3505569 R 573059 CDS YP_005703852.1 387154916 12867500 complement(3505898..3506281) 1 NC_017310.1 PFAM: small multidrug resistance protein; KEGG: dds:Ddes_1812 small multidrug resistance protein; small multidrug resistance protein 3506281 12867500 Deval_3073 Desulfovibrio vulgaris RCH1 small multidrug resistance protein YP_005703852.1 3505898 R 573059 CDS YP_005703853.1 387154917 12867501 complement(3506603..3506932) 1 NC_017310.1 manually curated; KEGG: blj:BLD_0467 superfamily II RNA helicase; hypothetical protein 3506932 12867501 Deval_3074 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703853.1 3506603 R 573059 CDS YP_005703854.1 387154918 12867502 3507110..3507385 1 NC_017310.1 KEGG: dma:DMR_28320 hypothetical protein; hypothetical protein 3507385 12867502 Deval_3075 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703854.1 3507110 D 573059 CDS YP_005703855.1 387154919 12867503 3507397..3509655 1 NC_017310.1 KEGG: dds:Ddes_1752 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; heavy metal translocating P-type ATPase 3509655 12867503 Deval_3076 Desulfovibrio vulgaris RCH1 heavy metal translocating P-type ATPase YP_005703855.1 3507397 D 573059 CDS YP_005703856.1 387154920 12867504 3509652..3510110 1 NC_017310.1 KEGG: eba:ebA616 hypothetical protein; hypothetical protein 3510110 12867504 Deval_3077 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703856.1 3509652 D 573059 CDS YP_005703857.1 387154921 12867505 complement(3510403..3511752) 1 NC_017310.1 KEGG: mxa:MXAN_0172 sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; two component Fis family sigma54-specific transcriptional regulator 3511752 12867505 Deval_3078 Desulfovibrio vulgaris RCH1 two component Fis family sigma54-specific transcriptional regulator YP_005703857.1 3510403 R 573059 CDS YP_005703858.1 387154922 12867506 complement(3511749..3513530) 1 NC_017310.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: fjo:Fjoh_1970 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase 3513530 12867506 Deval_3079 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005703858.1 3511749 R 573059 CDS YP_005703859.1 387154923 12867507 complement(3513527..3514666) 1 NC_017310.1 PFAM: Osmosensitive K channel His kinase sensor; UspA domain-containing protein; KEGG: mxa:MXAN_0167 osmosensitive K+ channel histidine kinase sensor subunit; osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD 3514666 12867507 Deval_3080 Desulfovibrio vulgaris RCH1 osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD YP_005703859.1 3513527 R 573059 CDS YP_005703860.1 387154924 12867508 complement(3514748..3515305) 1 NC_017310.1 TIGRFAM: potassium-transporting ATPase, C subunit; KEGG: mlo:mll3129 potassium-transporting atpase C chain, KdpC; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C 3515305 12867508 Deval_3081 Desulfovibrio vulgaris RCH1 potassium-transporting ATPase subunit C YP_005703860.1 3514748 R 573059 CDS YP_005703861.1 387154925 12867509 complement(3515315..3517351) 1 NC_017310.1 KEGG: aba:Acid345_0511 potassium-translocating P-type ATPase, B subunit; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; K+-transporting ATPase subunit B 3517351 12867509 Deval_3082 Desulfovibrio vulgaris RCH1 K+-transporting ATPase subunit B YP_005703861.1 3515315 R 573059 CDS YP_005703862.1 387154926 12867510 complement(3517368..3519077) 1 NC_017310.1 TIGRFAM: potassium-transporting ATPase, A subunit; KEGG: mxa:MXAN_0164 potassium-transporting ATPase subunit A; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A 3519077 12867510 Deval_3083 Desulfovibrio vulgaris RCH1 potassium-transporting ATPase subunit A YP_005703862.1 3517368 R 573059 CDS YP_005703863.1 387154927 12867511 3519718..3520134 1 NC_017310.1 PFAM: TadE family protein; KEGG: dma:DMR_14170 hypothetical protein; TadE family protein 3520134 12867511 Deval_3084 Desulfovibrio vulgaris RCH1 TadE family protein YP_005703863.1 3519718 D 573059 CDS YP_005703864.1 387154928 12867512 3520131..3520550 1 NC_017310.1 PFAM: TadE family protein; KEGG: xce:Xcel_1028 TadE family protein; TadE family protein 3520550 12867512 Deval_3085 Desulfovibrio vulgaris RCH1 TadE family protein YP_005703864.1 3520131 D 573059 CDS YP_005703865.1 387154929 12867513 3520562..3521731 1 NC_017310.1 PFAM: Protein of unknown function DUF2134, membrane; KEGG: dma:DMR_14150 hypothetical protein; hypothetical protein 3521731 12867513 Deval_3086 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703865.1 3520562 D 573059 CDS YP_005703866.1 387154930 12867514 complement(3521809..3522099) 1 NC_017310.1 KEGG: cyt:cce_1889 hypothetical protein; hypothetical protein 3522099 12867514 Deval_3087 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703866.1 3521809 R 573059 CDS YP_005703867.1 387154931 12867515 complement(3522412..3522960) 1 NC_017310.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein 3522960 12867515 Deval_3088 Desulfovibrio vulgaris RCH1 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein YP_005703867.1 3522412 R 573059 CDS YP_005703868.1 387154932 12867516 complement(3522960..3523742) 1 NC_017310.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative; thiamine pyrophosphate TPP-binding domain-containing protein 3523742 12867516 Deval_3089 Desulfovibrio vulgaris RCH1 thiamine pyrophosphate TPP-binding domain-containing protein YP_005703868.1 3522960 R 573059 CDS YP_005703869.1 387154933 12867517 complement(3523742..3524815) 1 NC_017310.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_0044 2-ketoisovalerate ferredoxin reductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 3524815 12867517 Deval_3090 Desulfovibrio vulgaris RCH1 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_005703869.1 3523742 R 573059 CDS YP_005703870.1 387154934 12867518 complement(3524819..3525052) 1 NC_017310.1 KEGG: dsa:Desal_3826 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3525052 12867518 Deval_3091 Desulfovibrio vulgaris RCH1 4Fe-4S ferredoxin YP_005703870.1 3524819 R 573059 CDS YP_005703871.1 387154935 12867519 complement(3525416..3526531) 1 NC_017310.1 KEGG: dde:Dde_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 3526531 12867519 Deval_3092 Desulfovibrio vulgaris RCH1 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_005703871.1 3525416 R 573059 CDS YP_005703872.1 387154936 12867520 3526644..3527213 1 NC_017310.1 KEGG: lip:LI0583 hypothetical protein; hypothetical protein 3527213 12867520 Deval_3093 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703872.1 3526644 D 573059 CDS YP_005703873.1 387154937 12867521 3527213..3528427 1 NC_017310.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: dde:Dde_0039 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3528427 12867521 Deval_3094 Desulfovibrio vulgaris RCH1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_005703873.1 3527213 D 573059 CDS YP_005703874.1 387154938 12867522 3528409..3529326 1 NC_017310.1 KEGG: dde:Dde_0038 hypothetical protein; hypothetical protein 3529326 12867522 Deval_3095 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703874.1 3528409 D 573059 CDS YP_005703875.1 387154939 12867523 3529795..3530550 1 NC_017310.1 KEGG: dsa:Desal_3833 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; hypothetical protein 3530550 12867523 Deval_3096 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703875.1 3529795 D 573059 CDS YP_005703876.1 387154940 12867524 3530598..3531605 1 NC_017310.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0033 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 3531605 12867524 Deval_3097 Desulfovibrio vulgaris RCH1 NAD-dependent epimerase/dehydratase YP_005703876.1 3530598 D 573059 CDS YP_005703877.1 387133887 12293039 46..399 1 NC_017311.1 KEGG: pmx:PERMA_1597 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 399 12293039 Deval_3098 Desulfovibrio vulgaris RCH1 histone family protein DNA-binding protein YP_005703877.1 46 D 573059 CDS YP_005703878.1 387133888 12293040 complement(1054..1974) 1 NC_017311.1 PFAM: UspA domain-containing protein; KEGG: sse:Ssed_1391 universal stress protein, UspA; UspA domain-containing protein 1974 12293040 Deval_3099 Desulfovibrio vulgaris RCH1 UspA domain-containing protein YP_005703878.1 1054 R 573059 CDS YP_005703879.1 387133889 12293041 complement(2012..3007) 1 NC_017311.1 PFAM: CBS domain containing protein; MgtE integral membrane region; KEGG: psl:Psta_1776 CBS domain containing protein; CBS domain containing protein 3007 12293041 Deval_3100 Desulfovibrio vulgaris RCH1 CBS domain containing protein YP_005703879.1 2012 R 573059 CDS YP_005703880.1 387133890 12293042 complement(3457..5001) 1 NC_017311.1 KEGG: dsa:Desal_0437 nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB; Radical SAM domain protein 5001 12293042 Deval_3101 Desulfovibrio vulgaris RCH1 Radical SAM domain protein YP_005703880.1 3457 R 573059 CDS YP_005703881.1 387133891 12293043 complement(5014..6528) 1 NC_017311.1 KEGG: dsa:Desal_0438 nitrogenase; PFAM: oxidoreductase/nitrogenase component 1; Nitrogenase 6528 12293043 Deval_3102 Desulfovibrio vulgaris RCH1 Nitrogenase YP_005703881.1 5014 R 573059 CDS YP_005703882.1 387133892 12293044 complement(6515..8401) 1 NC_017311.1 KEGG: dma:DMR_17520 nitrogenase MoFe cofactor biosynthesis protein; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase MoFe cofactor biosynthesis protein NifE 8401 12293044 Deval_3103 Desulfovibrio vulgaris RCH1 nitrogenase MoFe cofactor biosynthesis protein NifE YP_005703882.1 6515 R 573059 CDS YP_005703883.1 387133893 12293045 complement(8864..9166) 1 NC_017311.1 KEGG: sfu:Sfum_1014 ferredoxin, 2fe-2s; ferredoxin, 2fe-2s 9166 12293045 Deval_3104 Desulfovibrio vulgaris RCH1 ferredoxin, 2fe-2s YP_005703883.1 8864 R 573059 CDS YP_005703884.1 387133894 12293046 complement(9357..10742) 1 NC_017311.1 TIGRFAM: nitrogenase molybdenum-iron protein beta chain; KEGG: cph:Cpha266_0740 nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein beta chain 10742 12293046 Deval_3105 Desulfovibrio vulgaris RCH1 nitrogenase molybdenum-iron protein beta chain YP_005703884.1 9357 R 573059 CDS YP_005703885.1 387133895 12293047 complement(10779..12407) 1 NC_017311.1 KEGG: cpb:Cphamn1_1754 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein alpha chain 12407 12293047 Deval_3106 Desulfovibrio vulgaris RCH1 nitrogenase molybdenum-iron protein alpha chain YP_005703885.1 10779 R 573059 CDS YP_005703886.1 387133896 12293048 complement(12419..12814) 1 NC_017311.1 PFAM: nitrogen regulatory protein P-II; KEGG: plt:Plut_1530 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 12814 12293048 Deval_3107 Desulfovibrio vulgaris RCH1 nitrogen regulatory protein P-II YP_005703886.1 12419 R 573059 CDS YP_005703887.1 387133897 12293049 complement(12824..13150) 1 NC_017311.1 PFAM: nitrogen regulatory protein P-II; KEGG: cts:Ctha_1034 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 13150 12293049 Deval_3108 Desulfovibrio vulgaris RCH1 nitrogen regulatory protein P-II YP_005703887.1 12824 R 573059 CDS YP_005703888.1 387133898 12292894 complement(13433..14266) 1 NC_017311.1 TIGRFAM: nitrogenase iron protein; KEGG: dba:Dbac_0834 nitrogenase iron protein; PFAM: NifH/frxC-family protein; nitrogenase iron protein 14266 12292894 Deval_3109 Desulfovibrio vulgaris RCH1 nitrogenase iron protein YP_005703888.1 13433 R 573059 CDS YP_005703889.1 387133899 12292895 15090..16178 1 NC_017311.1 PFAM: pyruvate carboxyltransferase; KEGG: dsa:Desal_0448 pyruvate carboxyltransferase; pyruvate carboxyltransferase 16178 12292895 Deval_3110 Desulfovibrio vulgaris RCH1 pyruvate carboxyltransferase YP_005703889.1 15090 D 573059 CDS YP_005703890.1 387133900 12292896 complement(16545..16763) 1 NC_017311.1 KEGG: cfa:489657 spastic paraplegia 7 (pure and complicated autosomal recessive); hypothetical protein 16763 12292896 Deval_3111 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703890.1 16545 R 573059 CDS YP_005703891.1 387133901 12292897 17324..19000 1 NC_017311.1 KEGG: dma:DMR_14640 modification methylase; modification methylase 19000 12292897 Deval_3112 Desulfovibrio vulgaris RCH1 modification methylase YP_005703891.1 17324 D 573059 CDS YP_005703892.1 387133902 12292898 19000..19740 1 NC_017311.1 KEGG: dma:DMR_14630 type II restriction enzyme; PFAM: restriction endonuclease XhoI; Type II site-specific deoxyribonuclease 19740 12292898 Deval_3113 Desulfovibrio vulgaris RCH1 Type II site-specific deoxyribonuclease YP_005703892.1 19000 D 573059 CDS YP_005703893.1 387133903 12292899 complement(19895..20818) 1 NC_017311.1 KEGG: dde:Dde_0824 CAAX amino terminal protease family protein; TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein; CAAX prenyl protease-related protein 20818 12292899 Deval_3114 Desulfovibrio vulgaris RCH1 CAAX prenyl protease-related protein YP_005703893.1 19895 R 573059 CDS YP_005703894.1 387133904 12292900 complement(21188..22249) 1 NC_017311.1 PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0825 hypothetical protein; secretion protein HlyD family protein 22249 12292900 Deval_3115 Desulfovibrio vulgaris RCH1 secretion protein HlyD family protein YP_005703894.1 21188 R 573059 CDS YP_005703895.1 387133905 12292901 complement(22258..22944) 1 NC_017311.1 KEGG: dde:Dde_0826 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related protein 22944 12292901 Deval_3116 Desulfovibrio vulgaris RCH1 ABC transporter related protein YP_005703895.1 22258 R 573059 CDS YP_005703896.1 387133906 12292902 complement(23043..24173) 1 NC_017311.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative; protein of unknown function DUF214 24173 12292902 Deval_3117 Desulfovibrio vulgaris RCH1 protein of unknown function DUF214 YP_005703896.1 23043 R 573059 CDS YP_005703897.1 387133907 12292903 complement(24245..25798) 1 NC_017311.1 KEGG: dde:Dde_0820 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; response regulator receiver; putative two component, sigma54 specific, transcriptional regulator, Fis family 25798 12292903 Deval_3118 Desulfovibrio vulgaris RCH1 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_005703897.1 24245 R 573059 CDS YP_005703898.1 387133908 12292904 26144..26554 1 NC_017311.1 KEGG: afu:AF2138 phosphoserine phosphatase (SerB); hypothetical protein 26554 12292904 Deval_3119 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703898.1 26144 D 573059 CDS YP_005703899.1 387133909 12292905 complement(26675..27034) 1 NC_017311.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein; type IV pilus assembly PilZ 27034 12292905 Deval_3120 Desulfovibrio vulgaris RCH1 type IV pilus assembly PilZ YP_005703899.1 26675 R 573059 CDS YP_005703900.1 387133910 12292906 27878..28579 1 NC_017311.1 PFAM: protein of unknown function DUF1555; KEGG: llk:LLKF_1729 cell surface protein with WxL domain; protein of unknown function DUF1555 28579 12292906 Deval_3121 Desulfovibrio vulgaris RCH1 protein of unknown function DUF1555 YP_005703900.1 27878 D 573059 CDS YP_005703901.1 387133911 12292907 complement(29274..30140) 1 NC_017311.1 PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein; protein of unknown function DUF1555 30140 12292907 Deval_3122 Desulfovibrio vulgaris RCH1 protein of unknown function DUF1555 YP_005703901.1 29274 R 573059 CDS YP_005703902.1 387133912 12292908 complement(30265..31125) 1 NC_017311.1 PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein; protein of unknown function DUF1555 31125 12292908 Deval_3123 Desulfovibrio vulgaris RCH1 protein of unknown function DUF1555 YP_005703902.1 30265 R 573059 CDS YP_005703903.1 387133913 12292909 complement(31279..31545) 1 NC_017311.1 KEGG: tgu:100220127 hypothetical protein LOC100220127; hypothetical protein 31545 12292909 Deval_3124 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703903.1 31279 R 573059 CDS YP_005703904.1 387133914 12292910 complement(31811..34780) 1 NC_017311.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_0822 hypothetical protein; UBA/THIF-type NAD/FAD binding protein 34780 12292910 Deval_3125 Desulfovibrio vulgaris RCH1 UBA/THIF-type NAD/FAD binding protein YP_005703904.1 31811 R 573059 CDS YP_005703905.1 387133915 12292911 35067..35630 1 NC_017311.1 KEGG: dde:Dde_0821 hypothetical protein; hypothetical protein 35630 12292911 Deval_3126 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703905.1 35067 D 573059 CDS YP_005703906.1 387133916 12292912 35883..38543 1 NC_017311.1 KEGG: dde:Dde_0828 TPR repeat-containing protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; PEP-CTERM system TPR-repeat lipoprotein 38543 12292912 Deval_3127 Desulfovibrio vulgaris RCH1 PEP-CTERM system TPR-repeat lipoprotein YP_005703906.1 35883 D 573059 CDS YP_005703907.1 387133917 12292913 38555..40201 1 NC_017311.1 KEGG: gme:Gmet_2031 sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; sugar transferase, PEP-CTERM system associated; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 40201 12292913 Deval_3128 Desulfovibrio vulgaris RCH1 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_005703907.1 38555 D 573059 CDS YP_005703908.1 387133918 12292914 40201..41007 1 NC_017311.1 KEGG: dde:Dde_0830 capsular polysaccharide transport protein; TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; Soluble ligand binding domain; polysaccharide export protein, PEP-CTERM sytem-associated 41007 12292914 Deval_3129 Desulfovibrio vulgaris RCH1 polysaccharide export protein, PEP-CTERM sytem-associated YP_005703908.1 40201 D 573059 CDS YP_005703909.1 387133919 12292915 41008..42510 1 NC_017311.1 KEGG: dde:Dde_0831 chain length determinant family protein; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; polysaccharide chain length determinant protein, PEP-CTERM locus subfamily 42510 12292915 Deval_3130 Desulfovibrio vulgaris RCH1 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily YP_005703909.1 41008 D 573059 CDS YP_005703910.1 387133920 12292916 42521..43639 1 NC_017311.1 KEGG: dde:Dde_0832 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; capsular exopolysaccharide family 43639 12292916 Deval_3131 Desulfovibrio vulgaris RCH1 capsular exopolysaccharide family YP_005703910.1 42521 D 573059 CDS YP_005703911.1 387133921 12292917 43651..44970 1 NC_017311.1 KEGG: dde:Dde_0833 ATPase; TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; secretion ATPase, PEP-CTERM locus subfamily 44970 12292917 Deval_3132 Desulfovibrio vulgaris RCH1 secretion ATPase, PEP-CTERM locus subfamily YP_005703911.1 43651 D 573059 CDS YP_005703912.1 387133922 12292918 45147..46469 1 NC_017311.1 TIGRFAM: PEP-CTERM system associated protein; KEGG: dde:Dde_0834 putative lipoprotein; PEP-CTERM system associated protein 46469 12292918 Deval_3133 Desulfovibrio vulgaris RCH1 PEP-CTERM system associated protein YP_005703912.1 45147 D 573059 CDS YP_005703913.1 387133923 12292919 46522..47373 1 NC_017311.1 KEGG: dba:Dbac_2217 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; polysaccharide deactylase family protein, PEP-CTERM locus subfamily 47373 12292919 Deval_3134 Desulfovibrio vulgaris RCH1 polysaccharide deactylase family protein, PEP-CTERM locus subfamily YP_005703913.1 46522 D 573059 CDS YP_005703914.1 387133924 12292920 47366..48412 1 NC_017311.1 TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein; FemAB-related protein, PEP-CTERM system-associated 48412 12292920 Deval_3135 Desulfovibrio vulgaris RCH1 FemAB-related protein, PEP-CTERM system-associated YP_005703914.1 47366 D 573059 CDS YP_005703915.1 387133925 12292921 48409..50025 1 NC_017311.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dba:Dbac_2215 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 50025 12292921 Deval_3136 Desulfovibrio vulgaris RCH1 DegT/DnrJ/EryC1/StrS aminotransferase YP_005703915.1 48409 D 573059 CDS YP_005703916.1 387133926 12292922 50022..51470 1 NC_017311.1 PFAM: glycosyl transferase family 2; KEGG: dba:Dbac_2214 glycosyl transferase family 2; glycosyl transferase family 2 51470 12292922 Deval_3137 Desulfovibrio vulgaris RCH1 glycosyl transferase family 2 YP_005703916.1 50022 D 573059 CDS YP_005703917.1 387133927 12292923 51546..52862 1 NC_017311.1 KEGG: swi:Swit_2495 hypothetical protein; hypothetical protein 52862 12292923 Deval_3138 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703917.1 51546 D 573059 CDS YP_005703918.1 387133928 12292924 52917..54314 1 NC_017311.1 PFAM: O-antigen polymerase; KEGG: dba:Dbac_2212 O-antigen polymerase; O-antigen polymerase 54314 12292924 Deval_3139 Desulfovibrio vulgaris RCH1 O-antigen polymerase YP_005703918.1 52917 D 573059 CDS YP_005703919.1 387133929 12292925 54318..55787 1 NC_017311.1 PFAM: polysaccharide biosynthesis protein; KEGG: dba:Dbac_2211 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 55787 12292925 Deval_3140 Desulfovibrio vulgaris RCH1 polysaccharide biosynthesis protein YP_005703919.1 54318 D 573059 CDS YP_005703920.1 387133930 12292926 55809..57059 1 NC_017311.1 PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2210 glycosyl transferase, group 1; glycosyl transferase group 1 57059 12292926 Deval_3141 Desulfovibrio vulgaris RCH1 glycosyl transferase group 1 YP_005703920.1 55809 D 573059 CDS YP_005703921.1 387133931 12292927 57056..58444 1 NC_017311.1 PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2209 glycosyl transferase group 1; glycosyl transferase group 1 58444 12292927 Deval_3142 Desulfovibrio vulgaris RCH1 glycosyl transferase group 1 YP_005703921.1 57056 D 573059 CDS YP_005703922.1 387133932 12292928 58389..59294 1 NC_017311.1 KEGG: dba:Dbac_2208 acetyltransferase; acetyltransferase 59294 12292928 Deval_3143 Desulfovibrio vulgaris RCH1 acetyltransferase YP_005703922.1 58389 D 573059 CDS YP_005703923.1 387133933 12292929 59393..59527 1 NC_017311.1 hypothetical protein 59527 12292929 Deval_3144 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703923.1 59393 D 573059 CDS YP_005703924.1 387133934 12292930 59524..60132 1 NC_017311.1 KEGG: dba:Dbac_2207 transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein 60132 12292930 Deval_3145 Desulfovibrio vulgaris RCH1 transferase hexapeptide repeat containing protein YP_005703924.1 59524 D 573059 CDS YP_005703925.1 387133935 12292931 60129..61529 1 NC_017311.1 PFAM: glycosyl transferase group 1; KEGG: dba:Dbac_2206 glycosyl transferase group 1; glycosyl transferase group 1 61529 12292931 Deval_3146 Desulfovibrio vulgaris RCH1 glycosyl transferase group 1 YP_005703925.1 60129 D 573059 CDS YP_005703926.1 387133936 12292932 61526..62479 1 NC_017311.1 KEGG: dde:Dde_0847 hypothetical protein; TIGRFAM: eight transmembrane protein EpsH; PFAM: Exosortase EpsH-related; eight transmembrane protein EpsH 62479 12292932 Deval_3147 Desulfovibrio vulgaris RCH1 eight transmembrane protein EpsH YP_005703926.1 61526 D 573059 CDS YP_005703927.1 387133937 12292933 62469..63089 1 NC_017311.1 TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein; EpsI family protein 63089 12292933 Deval_3148 Desulfovibrio vulgaris RCH1 EpsI family protein YP_005703927.1 62469 D 573059 CDS YP_005703928.1 387133938 12292934 63244..64674 1 NC_017311.1 TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: dde:Dde_0850 two component Fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase; two component, sigma54 specific, transcriptional regulator, Fis family 64674 12292934 Deval_3149 Desulfovibrio vulgaris RCH1 two component, sigma54 specific, transcriptional regulator, Fis family YP_005703928.1 63244 D 573059 CDS YP_005703929.1 387133939 12292935 64742..67450 1 NC_017311.1 KEGG: dba:Dbac_2203 glycosyl hydrolase BNR repeat-containing protein; glycosyl hydrolase BNR repeat-containing protein 67450 12292935 Deval_3150 Desulfovibrio vulgaris RCH1 glycosyl hydrolase BNR repeat-containing protein YP_005703929.1 64742 D 573059 CDS YP_005703930.1 387133940 12292936 67498..68871 1 NC_017311.1 KEGG: dba:Dbac_2200 ATP-grasp protein-like protein; hypothetical protein 68871 12292936 Deval_3151 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703930.1 67498 D 573059 CDS YP_005703931.1 387133941 12292937 69010..70395 1 NC_017311.1 KEGG: pkaA; serine/threonine protein kinase; hypothetical protein 70395 12292937 Deval_3152 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703931.1 69010 D 573059 CDS YP_005703932.1 387133942 12292938 70392..71744 1 NC_017311.1 PFAM: protein of unknown function DUF1624; KEGG: mex:Mext_1201 hypothetical protein; protein of unknown function DUF1624 71744 12292938 Deval_3153 Desulfovibrio vulgaris RCH1 protein of unknown function DUF1624 YP_005703932.1 70392 D 573059 CDS YP_005703933.1 387133943 12292939 71741..73036 1 NC_017311.1 PFAM: protein of unknown function DUF201; KEGG: dba:Dbac_2200 ATP-grasp protein-like protein; protein of unknown function DUF201 73036 12292939 Deval_3154 Desulfovibrio vulgaris RCH1 protein of unknown function DUF201 YP_005703933.1 71741 D 573059 CDS YP_005703934.1 387133944 12292940 73024..74649 1 NC_017311.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent; cyclic nucleotide-binding protein 74649 12292940 Deval_3155 Desulfovibrio vulgaris RCH1 cyclic nucleotide-binding protein YP_005703934.1 73024 D 573059 CDS YP_005703935.1 387133945 12292941 74646..75653 1 NC_017311.1 PFAM: Methicillin resistance protein; KEGG: sfu:Sfum_0970 hypothetical protein; Methicillin resistance protein 75653 12292941 Deval_3156 Desulfovibrio vulgaris RCH1 Methicillin resistance protein YP_005703935.1 74646 D 573059 CDS YP_005703936.1 387133946 12292942 75721..77442 1 NC_017311.1 KEGG: dba:Dbac_2205 coenzyme F390 synthetase-like protein; hypothetical protein 77442 12292942 Deval_3157 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703936.1 75721 D 573059 CDS YP_005703937.1 387133947 12292943 77439..79475 1 NC_017311.1 TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; multi-sensor signal transduction histidine kinase 79475 12292943 Deval_3158 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005703937.1 77439 D 573059 CDS YP_005703938.1 387133948 12292944 79929..81341 1 NC_017311.1 PFAM: Patatin; KEGG: dde:Dde_0819 alpha-beta hydrolase superfamily esterase; Patatin 81341 12292944 Deval_3159 Desulfovibrio vulgaris RCH1 Patatin YP_005703938.1 79929 D 573059 CDS YP_005703939.1 387133949 12292945 complement(81714..82838) 1 NC_017311.1 KEGG: fps:FP1263 hypothetical protein; hypothetical protein 82838 12292945 Deval_3160 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703939.1 81714 R 573059 CDS YP_005703940.1 387133950 12292946 complement(82890..84872) 1 NC_017311.1 KEGG: dma:DMR_26840 hypothetical membrane protein; hypothetical protein 84872 12292946 Deval_3161 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703940.1 82890 R 573059 CDS YP_005703941.1 387133951 12292947 complement(84916..85452) 1 NC_017311.1 PFAM: Methyltransferase type 12; KEGG: lic:LIC11297 cyclopropane-fatty-acyl-phospholipid synthase/methyltransferase; Methyltransferase type 12 85452 12292947 Deval_3162 Desulfovibrio vulgaris RCH1 Methyltransferase type 12 YP_005703941.1 84916 R 573059 CDS YP_005703942.1 387133952 12292948 complement(85428..86651) 1 NC_017311.1 PFAM: GtrA family protein; glycosyl transferase family 2; KEGG: sus:Acid_0467 glycosyl transferase family protein; GtrA family protein 86651 12292948 Deval_3163 Desulfovibrio vulgaris RCH1 GtrA family protein YP_005703942.1 85428 R 573059 CDS YP_005703943.1 387133953 12292949 complement(86648..88579) 1 NC_017311.1 PFAM: Methyltransferase type 11; KEGG: cmi:CMM_1603 putative pyruvyltransferase; Methyltransferase type 11 88579 12292949 Deval_3164 Desulfovibrio vulgaris RCH1 Methyltransferase type 11 YP_005703943.1 86648 R 573059 CDS YP_005703944.1 387133954 12292950 complement(88672..90828) 1 NC_017311.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: sus:Acid_0615 glycosyl transferase family protein; glycosyl transferase family 2 90828 12292950 Deval_3165 Desulfovibrio vulgaris RCH1 glycosyl transferase family 2 YP_005703944.1 88672 R 573059 CDS YP_005703945.1 387133955 12292951 complement(90957..92294) 1 NC_017311.1 PFAM: glycosyl transferase group 1; KEGG: dma:DMR_14080 putative glycosyltransferase; glycosyl transferase group 1 92294 12292951 Deval_3166 Desulfovibrio vulgaris RCH1 glycosyl transferase group 1 YP_005703945.1 90957 R 573059 CDS YP_005703946.1 387133956 12292952 complement(92403..95072) 1 NC_017311.1 KEGG: cag:Cagg_1962 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase (glutamine-hydrolyzing) 95072 12292952 Deval_3167 Desulfovibrio vulgaris RCH1 asparagine synthase (glutamine-hydrolyzing) YP_005703946.1 92403 R 573059 CDS YP_005703947.1 387133957 12292953 complement(95163..95852) 1 NC_017311.1 PFAM: sulfotransferase; KEGG: pmi:PMT9312_1164 sulfotransferase family protein; sulfotransferase 95852 12292953 Deval_3168 Desulfovibrio vulgaris RCH1 sulfotransferase YP_005703947.1 95163 R 573059 CDS YP_005703948.1 387133958 12292954 complement(95940..97346) 1 NC_017311.1 KEGG: lic:LIC12165 putative molybdenum cofactor biosynthesis protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Radical SAM domain protein 97346 12292954 Deval_3169 Desulfovibrio vulgaris RCH1 Radical SAM domain protein YP_005703948.1 95940 R 573059 CDS YP_005703949.1 387133959 12292955 complement(97361..98797) 1 NC_017311.1 KEGG: dma:DMR_26190 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related protein 98797 12292955 Deval_3170 Desulfovibrio vulgaris RCH1 ABC transporter related protein YP_005703949.1 97361 R 573059 CDS YP_005703950.1 387133960 12292956 complement(98787..99671) 1 NC_017311.1 KEGG: rca:Rcas_3650 ABC-2 type transporter; manually curated; PFAM: ABC-2 type transporter; ABC-2 type transporter 99671 12292956 Deval_3171 Desulfovibrio vulgaris RCH1 ABC-2 type transporter YP_005703950.1 98787 R 573059 CDS YP_005703951.1 387133961 12292957 99944..100081 1 NC_017311.1 hypothetical protein 100081 12292957 Deval_3172 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703951.1 99944 D 573059 CDS YP_005703952.1 387133962 12292958 100178..100825 1 NC_017311.1 TIGRFAM: adenylylsulfate kinase; KEGG: dsa:Desal_3653 adenylylsulfate kinase; PFAM: adenylylsulfate kinase; adenylylsulfate kinase 100825 12292958 Deval_3173 Desulfovibrio vulgaris RCH1 adenylylsulfate kinase YP_005703952.1 100178 D 573059 CDS YP_005703953.1 387133963 12292959 100923..101804 1 NC_017311.1 PFAM: glycosyl transferase family 2; KEGG: dds:Ddes_0400 glycosyl transferase family 2; glycosyl transferase family 2 101804 12292959 Deval_3174 Desulfovibrio vulgaris RCH1 glycosyl transferase family 2 YP_005703953.1 100923 D 573059 CDS YP_005703954.1 387133964 12292960 101804..103918 1 NC_017311.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: lip:LIC085 glycosyl transferase; glycosyl transferase family 2 103918 12292960 Deval_3175 Desulfovibrio vulgaris RCH1 glycosyl transferase family 2 YP_005703954.1 101804 D 573059 CDS YP_005703955.1 387133965 12292961 complement(104223..105254) 1 NC_017311.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lip:LIC001 integrase/recombinase; integrase family protein 105254 12292961 Deval_3176 Desulfovibrio vulgaris RCH1 integrase family protein YP_005703955.1 104223 R 573059 CDS YP_005703956.1 387133966 12292962 105646..105858 1 NC_017311.1 KEGG: tko:TK0888 SpoVT/AbrB family transcription regulator; SpoVT/AbrB family transcription regulator 105858 12292962 Deval_3177 Desulfovibrio vulgaris RCH1 SpoVT/AbrB family transcription regulator YP_005703956.1 105646 D 573059 CDS YP_005703957.1 387133967 12292963 105913..109443 1 NC_017311.1 SMART: AAA ATPase; KEGG: stm:STM4489 putative DNA helicases; AAA ATPase 109443 12292963 Deval_3178 Desulfovibrio vulgaris RCH1 AAA ATPase YP_005703957.1 105913 D 573059 CDS YP_005703958.1 387133968 12292964 complement(109555..110646) 1 NC_017311.1 KEGG: dma:DMR_24840 response regulator receiver protein; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; response regulator receiver modulated metal dependent phosphohydrolase 110646 12292964 Deval_3179 Desulfovibrio vulgaris RCH1 response regulator receiver modulated metal dependent phosphohydrolase YP_005703958.1 109555 R 573059 CDS YP_005703959.1 387133969 12292965 complement(110643..111035) 1 NC_017311.1 KEGG: dma:DMR_24850 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 111035 12292965 Deval_3180 Desulfovibrio vulgaris RCH1 response regulator receiver protein YP_005703959.1 110643 R 573059 CDS YP_005703960.1 387133970 12292966 complement(111032..114325) 1 NC_017311.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: dba:Dbac_0052 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 114325 12292966 Deval_3181 Desulfovibrio vulgaris RCH1 multi-sensor signal transduction histidine kinase YP_005703960.1 111032 R 573059 CDS YP_005703961.1 387133971 12292967 complement(114334..115584) 1 NC_017311.1 PFAM: protein of unknown function DUF534; KEGG: dma:DMR_24870 hypothetical protein; protein of unknown function DUF534 115584 12292967 Deval_3182 Desulfovibrio vulgaris RCH1 protein of unknown function DUF534 YP_005703961.1 114334 R 573059 CDS YP_005703962.1 387133972 12292968 complement(115846..116463) 1 NC_017311.1 PFAM: protein of unknown function DUF1555; KEGG: nmu:Nmul_A1415 hypothetical protein; protein of unknown function DUF1555 116463 12292968 Deval_3183 Desulfovibrio vulgaris RCH1 protein of unknown function DUF1555 YP_005703962.1 115846 R 573059 CDS YP_005703963.1 387133973 12292969 117043..117915 1 NC_017311.1 PFAM: protein of unknown function DUF554; KEGG: dsa:Desal_0492 protein of unknown function DUF554; protein of unknown function DUF554 117915 12292969 Deval_3184 Desulfovibrio vulgaris RCH1 protein of unknown function DUF554 YP_005703963.1 117043 D 573059 CDS YP_005703964.1 387133974 12292970 118052..119509 1 NC_017311.1 KEGG: dma:DMR_34220 catalase; PFAM: Catalase related subgroup; Catalase domain protein; Catalase 119509 12292970 Deval_3185 Desulfovibrio vulgaris RCH1 Catalase YP_005703964.1 118052 D 573059 CDS YP_005703965.1 387133975 12292971 complement(119728..120207) 1 NC_017311.1 KEGG: dde:Dde_1347 hypothetical protein; hypothetical protein 120207 12292971 Deval_3186 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703965.1 119728 R 573059 CDS YP_005703966.1 387133976 12292972 complement(120396..121736) 1 NC_017311.1 KEGG: dba:Dbac_2674 chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter, chromate ion transporter (CHR) family 121736 12292972 Deval_3187 Desulfovibrio vulgaris RCH1 chromate transporter, chromate ion transporter (CHR) family YP_005703966.1 120396 R 573059 CDS YP_005703967.1 387133977 12292973 complement(121743..122747) 1 NC_017311.1 PFAM: Chromate resistance exported protein; KEGG: dba:Dbac_2675 ChrB protein; Chromate resistance exported protein 122747 12292973 Deval_3188 Desulfovibrio vulgaris RCH1 Chromate resistance exported protein YP_005703967.1 121743 R 573059 CDS YP_005703968.1 387133978 12292974 complement(122734..123045) 1 NC_017311.1 KEGG: dba:Dbac_2676 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Rhodanese domain protein 123045 12292974 Deval_3189 Desulfovibrio vulgaris RCH1 Rhodanese domain protein YP_005703968.1 122734 R 573059 CDS YP_005703969.1 387133979 12292975 complement(123109..123387) 1 NC_017311.1 KEGG: dba:Dbac_2677 hypothetical protein; hypothetical protein 123387 12292975 Deval_3190 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703969.1 123109 R 573059 CDS YP_005703970.1 387133980 12292976 123720..124931 1 NC_017311.1 PFAM: major facilitator superfamily MFS_1; KEGG: dma:DMR_37230 major facilitator superfamily protein; major facilitator superfamily MFS_1 124931 12292976 Deval_3191 Desulfovibrio vulgaris RCH1 major facilitator superfamily MFS_1 YP_005703970.1 123720 D 573059 CDS YP_005703971.1 387133981 12292977 125264..126763 1 NC_017311.1 PFAM: Radical SAM domain protein; KEGG: dsa:Desal_3155 radical SAM domain protein; Radical SAM domain protein 126763 12292977 Deval_3192 Desulfovibrio vulgaris RCH1 Radical SAM domain protein YP_005703971.1 125264 D 573059 CDS YP_005703972.1 387133982 12292978 complement(126908..127957) 1 NC_017311.1 PFAM: 3-dehydroquinate synthase; KEGG: scl:sce5394 glycerol-1-phosphate dehydrogenase (NAD(P)(+)); 3-dehydroquinate synthase 127957 12292978 Deval_3193 Desulfovibrio vulgaris RCH1 3-dehydroquinate synthase YP_005703972.1 126908 R 573059 CDS YP_005703973.1 387133983 12292979 complement(128127..130301) 1 NC_017311.1 KEGG: lip:LI1150 putative regulator; PFAM: Stage II sporulation protein E; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; protein serine/threonine phosphatase 130301 12292979 Deval_3194 Desulfovibrio vulgaris RCH1 protein serine/threonine phosphatase YP_005703973.1 128127 R 573059 CDS YP_005703974.1 387133984 12292980 complement(130298..130672) 1 NC_017311.1 KEGG: bta:531974 neuron navigator 1; neuron navigator 1 130672 12292980 Deval_3195 Desulfovibrio vulgaris RCH1 neuron navigator 1 YP_005703974.1 130298 R 573059 CDS YP_005703975.1 387133985 12292981 complement(130669..132396) 1 NC_017311.1 KEGG: lip:LI1151 transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; sigma54 specific transcriptional regulator, Fis family 132396 12292981 Deval_3196 Desulfovibrio vulgaris RCH1 sigma54 specific transcriptional regulator, Fis family YP_005703975.1 130669 R 573059 CDS YP_005703976.1 387133986 12292982 complement(132444..133484) 1 NC_017311.1 KEGG: lip:LI0551 translocation protein in type III secretion; TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; type III secretion protein, YscU/HrpY family 133484 12292982 Deval_3197 Desulfovibrio vulgaris RCH1 type III secretion protein, YscU/HrpY family YP_005703976.1 132444 R 573059 CDS YP_005703977.1 387133987 12292983 complement(133481..134296) 1 NC_017311.1 KEGG: lip:LI0550 type III secretion component protein SctT; TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; type III secretion protein SpaR/YscT/HrcT 134296 12292983 Deval_3198 Desulfovibrio vulgaris RCH1 type III secretion protein SpaR/YscT/HrcT YP_005703977.1 133481 R 573059 CDS YP_005703978.1 387133988 12292984 complement(134303..134563) 1 NC_017311.1 KEGG: lip:LI0549 translocation protein in type III secretion; TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; type III secretion protein, HrpO family 134563 12292984 Deval_3199 Desulfovibrio vulgaris RCH1 type III secretion protein, HrpO family YP_005703978.1 134303 R 573059 CDS YP_005703979.1 387133989 12292985 complement(134885..136978) 1 NC_017311.1 KEGG: lip:LI0548 putative type III secretion pore protein; TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; type III secretion protein, HrcV family 136978 12292985 Deval_3200 Desulfovibrio vulgaris RCH1 type III secretion protein, HrcV family YP_005703979.1 134885 R 573059 CDS YP_005703980.1 387133990 12292986 complement(136975..137334) 1 NC_017311.1 KEGG: lip:LI0547 hypothetical protein; hypothetical protein 137334 12292986 Deval_3201 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703980.1 136975 R 573059 CDS YP_005703981.1 387133991 12292987 complement(137337..137705) 1 NC_017311.1 KEGG: lip:LI1152 hypothetical protein; hypothetical protein 137705 12292987 Deval_3202 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703981.1 137337 R 573059 CDS YP_005703982.1 387133992 12292988 complement(137702..138076) 1 NC_017311.1 TIGRFAM: type III secretion chaperone SycN; KEGG: lip:LI0546 hypothetical protein; type III secretion chaperone SycN 138076 12292988 Deval_3203 Desulfovibrio vulgaris RCH1 type III secretion chaperone SycN YP_005703982.1 137702 R 573059 CDS YP_005703983.1 387133993 12292989 complement(138079..139203) 1 NC_017311.1 KEGG: lip:LI1153 putative outer protein N; TIGRFAM: type III secretion regulator YopN/LcrE/InvE/MxiC; type III secretion effector delivery regulator, TyeA family; PFAM: TyeA domain-containing protein; Hypersensitivity response secretion HrpJ domain protein; type III secretion regulator YopN/LcrE/InvE/MxiC 139203 12292989 Deval_3204 Desulfovibrio vulgaris RCH1 type III secretion regulator YopN/LcrE/InvE/MxiC YP_005703983.1 138079 R 573059 CDS YP_005703984.1 387133994 12292990 139910..140212 1 NC_017311.1 KEGG: lip:LI0545 hypothetical protein; hypothetical protein 140212 12292990 Deval_3205 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703984.1 139910 D 573059 CDS YP_005703985.1 387133995 12292991 140248..140757 1 NC_017311.1 KEGG: lip:LI1154 hypothetical protein; hypothetical protein 140757 12292991 Deval_3206 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703985.1 140248 D 573059 CDS YP_005703986.1 387133996 12292992 140766..141266 1 NC_017311.1 KEGG: lip:LI1157 regulatory protein PcrH; TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3 repeat-containing protein; type III secretion low calcium response chaperone LcrH/SycD 141266 12292992 Deval_3207 Desulfovibrio vulgaris RCH1 type III secretion low calcium response chaperone LcrH/SycD YP_005703986.1 140766 D 573059 CDS YP_005703987.1 387133997 12292993 141263..142270 1 NC_017311.1 KEGG: lip:LI1158 hypothetical protein; hypothetical protein 142270 12292993 Deval_3208 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703987.1 141263 D 573059 CDS YP_005703988.1 387133998 12292994 142282..143115 1 NC_017311.1 PFAM: YopD family protein; KEGG: asa:ASA_P5G064 AopD protein; YopD family protein 143115 12292994 Deval_3209 Desulfovibrio vulgaris RCH1 YopD family protein YP_005703988.1 142282 D 573059 CDS YP_005703989.1 387133999 12292995 143168..143623 1 NC_017311.1 PFAM: Tir chaperone family protein; KEGG: bpe:BP2236 hypothetical protein; Tir chaperone family protein 143623 12292995 Deval_3210 Desulfovibrio vulgaris RCH1 Tir chaperone family protein YP_005703989.1 143168 D 573059 CDS YP_005703990.1 387134000 12292996 143710..145800 1 NC_017311.1 KEGG: lip:LI1160 putative type III secretion protein YscC; TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; type III secretion outer membrane pore, YscC/HrcC family 145800 12292996 Deval_3211 Desulfovibrio vulgaris RCH1 type III secretion outer membrane pore, YscC/HrcC family YP_005703990.1 143710 D 573059 CDS YP_005703991.1 387134001 12292997 145797..147605 1 NC_017311.1 TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 hypothetical protein; type III secretion apparatus protein, YscD/HrpQ family 147605 12292997 Deval_3212 Desulfovibrio vulgaris RCH1 type III secretion apparatus protein, YscD/HrpQ family YP_005703991.1 145797 D 573059 CDS YP_005703992.1 387134002 12292998 147598..147807 1 NC_017311.1 KEGG: hch:HCH_05129 hypothetical protein; hypothetical protein 147807 12292998 Deval_3213 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703992.1 147598 D 573059 CDS YP_005703993.1 387134003 12292999 147833..148084 1 NC_017311.1 KEGG: eok:G2583_4407 type III secretion apparatus needle protein; TIGRFAM: type III secretion system needle protein; PFAM: Type III secretion, needle-protein like; type III secretion system needle protein 148084 12292999 Deval_3214 Desulfovibrio vulgaris RCH1 type III secretion system needle protein YP_005703993.1 147833 D 573059 CDS YP_005703994.1 387134004 12293000 148279..148644 1 NC_017311.1 KEGG: lip:LI0544 hypothetical protein; hypothetical protein 148644 12293000 Deval_3215 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703994.1 148279 D 573059 CDS YP_005703995.1 387134005 12293001 148687..149502 1 NC_017311.1 KEGG: aoe:Clos_0100 triple helix repeat-containing collagen; hypothetical protein 149502 12293001 Deval_3216 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703995.1 148687 D 573059 CDS YP_005703996.1 387134006 12293002 149527..150342 1 NC_017311.1 KEGG: lip:LI1163 putative type III secretion protein; TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; type III secretion apparatus lipoprotein, YscJ/HrcJ family 150342 12293002 Deval_3217 Desulfovibrio vulgaris RCH1 type III secretion apparatus lipoprotein, YscJ/HrcJ family YP_005703996.1 149527 D 573059 CDS YP_005703997.1 387134007 12293003 150349..151272 1 NC_017311.1 KEGG: lip:LI0542 hypothetical protein; hypothetical protein 151272 12293003 Deval_3218 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005703997.1 150349 D 573059 CDS YP_005703998.1 387134008 12293004 151251..151868 1 NC_017311.1 KEGG: lip:LI0541 type III secretion system protein; TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; type III secretion apparatus protein, HrpE/YscL family 151868 12293004 Deval_3219 Desulfovibrio vulgaris RCH1 type III secretion apparatus protein, HrpE/YscL family YP_005703998.1 151251 D 573059 CDS YP_005703999.1 387134009 12293005 152196..153512 1 NC_017311.1 TIGRFAM: type III secretion apparatus H+-transporting two-sector ATPase; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: lip:LI0540 type III secretion system ATPase; SMART: AAA ATPase; type III secretion apparatus H+-transporting two-sector ATPase 153512 12293005 Deval_3220 Desulfovibrio vulgaris RCH1 type III secretion apparatus H+-transporting two-sector ATPase YP_005703999.1 152196 D 573059 CDS YP_005704000.1 387134010 12293006 153516..154010 1 NC_017311.1 PFAM: type III secretion YscO fmaily protein; KEGG: lip:LI0539 hypothetical protein; type III secretion YscO fmaily protein 154010 12293006 Deval_3221 Desulfovibrio vulgaris RCH1 type III secretion YscO fmaily protein YP_005704000.1 153516 D 573059 CDS YP_005704001.1 387134011 12293007 154041..154715 1 NC_017311.1 TIGRFAM: type III secretion system needle length determinant; KEGG: hch:HCH_05109 hypothetical protein; type III secretion system needle length determinant 154715 12293007 Deval_3222 Desulfovibrio vulgaris RCH1 type III secretion system needle length determinant YP_005704001.1 154041 D 573059 CDS YP_005704002.1 387134012 12293008 154717..156171 1 NC_017311.1 KEGG: lip:LI1166 putative translocation protein in type III secretion; TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; type III secretion system apparatus protein YscQ/HrcQ 156171 12293008 Deval_3223 Desulfovibrio vulgaris RCH1 type III secretion system apparatus protein YscQ/HrcQ YP_005704002.1 154717 D 573059 CDS YP_005704003.1 387134013 12293009 156168..156818 1 NC_017311.1 KEGG: lip:LI0537 type III secretion system protein; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; Yop virulence translocation R 156818 12293009 Deval_3224 Desulfovibrio vulgaris RCH1 Yop virulence translocation R YP_005704003.1 156168 D 573059 CDS YP_005704004.1 387134014 12293010 156849..157184 1 NC_017311.1 KEGG: lip:LI1167 anti-anti-sigma factor; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 157184 12293010 Deval_3225 Desulfovibrio vulgaris RCH1 anti-sigma-factor antagonist YP_005704004.1 156849 D 573059 CDS YP_005704005.1 387134015 12293011 157200..157616 1 NC_017311.1 KEGG: lip:LI1168 sigma regulatory factor-histidine kinase; sigma regulatory factor-histidine kinase 157616 12293011 Deval_3226 Desulfovibrio vulgaris RCH1 sigma regulatory factor-histidine kinase YP_005704005.1 157200 D 573059 CDS YP_005704006.1 387134016 12293012 157627..158979 1 NC_017311.1 PFAM: Lytic transglycosylase catalytic; KEGG: lip:LI1169 putative transglycosylase; Lytic transglycosylase catalytic 158979 12293012 Deval_3227 Desulfovibrio vulgaris RCH1 Lytic transglycosylase catalytic YP_005704006.1 157627 D 573059 CDS YP_005704007.1 387134017 12293013 159353..159820 1 NC_017311.1 PFAM: Tir chaperone family protein; KEGG: eta:ETA_05380 potential ORFB-specific chaperone, encodes a homolog of virulence/avirulence effector proteins secreted via the type III pathway; Tir chaperone family protein 159820 12293013 Deval_3228 Desulfovibrio vulgaris RCH1 Tir chaperone family protein YP_005704007.1 159353 D 573059 CDS YP_005704008.1 387134018 12293014 159880..162360 1 NC_017311.1 KEGG: ang:An07g05660 hypothetical protein; hypothetical protein 162360 12293014 Deval_3229 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005704008.1 159880 D 573059 CDS YP_005704009.1 387134019 12293015 162682..164919 1 NC_017311.1 TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; metal dependent phophohydrolase; PFAM: DEAD/DEAH box helicase domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: metal dependent phosphohydrolase; SMART: DEAD-like helicase ; metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 164919 12293015 Deval_3230 Desulfovibrio vulgaris RCH1 metal dependent phosphohydrolase YP_005704009.1 162682 D 573059 CDS YP_005704010.1 387134020 12293016 164933..165616 1 NC_017311.1 KEGG: avn:Avin_31620 CRISPR-associated protein Cas5d; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5; CRISPR-associated protein Cas5 family 165616 12293016 Deval_3231 Desulfovibrio vulgaris RCH1 CRISPR-associated protein Cas5 family YP_005704010.1 164933 D 573059 CDS YP_005704011.1 387134021 12293017 165613..167451 1 NC_017311.1 KEGG: dma:DMR_14370 hypothetical protein; TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; CRISPR-associated protein, Csd1 family 167451 12293017 Deval_3232 Desulfovibrio vulgaris RCH1 CRISPR-associated protein, Csd1 family YP_005704011.1 165613 D 573059 CDS YP_005704012.1 387134022 12293018 167454..168326 1 NC_017311.1 KEGG: avn:Avin_31600 CRISPR-associated protein Csd2; TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; CRISPR-associated protein, Csd2 family 168326 12293018 Deval_3233 Desulfovibrio vulgaris RCH1 CRISPR-associated protein, Csd2 family YP_005704012.1 167454 D 573059 CDS YP_005704013.1 387134023 12293019 168328..168966 1 NC_017311.1 TIGRFAM: CRISPR-associated protein Cas4; KEGG: dma:DMR_14390 hypothetical protein; CRISPR-associated protein Cas4 168966 12293019 Deval_3234 Desulfovibrio vulgaris RCH1 CRISPR-associated protein Cas4 YP_005704013.1 168328 D 573059 CDS YP_005704014.1 387134024 12293020 168950..169981 1 NC_017311.1 KEGG: sat:SYN_02473 putative cytoplasmic protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; CRISPR-associated protein Cas1 169981 12293020 Deval_3235 Desulfovibrio vulgaris RCH1 CRISPR-associated protein Cas1 YP_005704014.1 168950 D 573059 CDS YP_005704015.1 387134025 12293021 169986..170276 1 NC_017311.1 KEGG: dma:DMR_14410 hypothetical protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; CRISPR-associated protein Cas2 170276 12293021 Deval_3236 Desulfovibrio vulgaris RCH1 CRISPR-associated protein Cas2 YP_005704015.1 169986 D 573059 CDS YP_005704016.1 387134026 12293022 complement(172385..173218) 1 NC_017311.1 PFAM: zinc/iron permease; KEGG: dma:DMR_11420 zinc transporter ZupT; zinc/iron permease 173218 12293022 Deval_3237 Desulfovibrio vulgaris RCH1 zinc/iron permease YP_005704016.1 172385 R 573059 CDS YP_005704017.1 387134027 12293023 complement(173340..173987) 1 NC_017311.1 KEGG: geo:Geob_1277 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; two component transcriptional regulator, LuxR family 173987 12293023 Deval_3238 Desulfovibrio vulgaris RCH1 two component transcriptional regulator, LuxR family YP_005704017.1 173340 R 573059 CDS YP_005704018.1 387134028 12293024 complement(173974..176022) 1 NC_017311.1 KEGG: gur:Gura_0744 integral membrane sensor signal transduction histidine kinase; PFAM: Diverse 7TM receptor transmembrane region; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; integral membrane sensor signal transduction histidine kinase 176022 12293024 Deval_3239 Desulfovibrio vulgaris RCH1 integral membrane sensor signal transduction histidine kinase YP_005704018.1 173974 R 573059 CDS YP_005704019.1 387134029 12293025 complement(176222..178387) 1 NC_017311.1 KEGG: bav:BAV1572 autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain protein 178387 12293025 Deval_3240 Desulfovibrio vulgaris RCH1 outer membrane autotransporter barrel domain protein YP_005704019.1 176222 R 573059 CDS YP_005704020.1 387134030 12293027 complement(179343..180890) 1 NC_017311.1 TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; KEGG: dsa:Desal_0518 transcriptional regulator, NifA, fis family; SMART: GAF domain protein; AAA ATPase; transcriptional regulator, NifA subfamily, Fis Family 180890 12293027 Deval_3242 Desulfovibrio vulgaris RCH1 transcriptional regulator, NifA subfamily, Fis Family YP_005704020.1 179343 R 573059 CDS YP_005704021.1 387134031 12293028 182106..185831 1 NC_017311.1 KEGG: met:M446_6067 hypothetical protein; hypothetical protein 185831 12293028 Deval_3243 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005704021.1 182106 D 573059 CDS YP_005704022.1 387134032 12293029 185842..186312 1 NC_017311.1 PFAM: Tir chaperone family protein; KEGG: mmi:MMAR_1484 PPE family protein; Tir chaperone family protein 186312 12293029 Deval_3244 Desulfovibrio vulgaris RCH1 Tir chaperone family protein YP_005704022.1 185842 D 573059 CDS YP_005704023.1 387134033 12293031 186891..188132 1 NC_017311.1 KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component; ABC-type uncharacterized transport system, periplasmic component 188132 12293031 Deval_3246 Desulfovibrio vulgaris RCH1 ABC-type uncharacterized transport system, periplasmic component YP_005704023.1 186891 D 573059 CDS YP_005704024.1 387134034 12293032 188119..191157 1 NC_017311.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_03642 major facilitator superfamily protein; major facilitator superfamily MFS_1 191157 12293032 Deval_3247 Desulfovibrio vulgaris RCH1 major facilitator superfamily MFS_1 YP_005704024.1 188119 D 573059 CDS YP_005704025.1 387134035 12293033 191189..192976 1 NC_017311.1 KEGG: pin:Ping_3332 hypothetical protein; hypothetical protein 192976 12293033 Deval_3248 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005704025.1 191189 D 573059 CDS YP_005704026.1 387134036 12293034 complement(193169..193906) 1 NC_017311.1 KEGG: dsa:Desal_0904 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; extracellular solute-binding protein family 3 193906 12293034 Deval_3249 Desulfovibrio vulgaris RCH1 extracellular solute-binding protein family 3 YP_005704026.1 193169 R 573059 CDS YP_005704027.1 387134037 12293035 194418..194810 1 NC_017311.1 KEGG: dba:Dbac_0227 transcriptional regulator, XRE family; transcriptional regulator, XRE family 194810 12293035 Deval_3250 Desulfovibrio vulgaris RCH1 transcriptional regulator, XRE family YP_005704027.1 194418 D 573059 CDS YP_005704028.1 387134038 12293038 194800..196095 1 NC_017311.1 PFAM: HipA domain protein; KEGG: dba:Dbac_0226 HipA domain protein; HipA domain protein 196095 12293038 Deval_3251 Desulfovibrio vulgaris RCH1 HipA domain protein YP_005704028.1 194800 D 573059 CDS YP_005704029.1 387134039 12293036 197732..198550 1 NC_017311.1 KEGG: dma:DMR_p1_00010 putative chromosome partitioning protein ParA; putative chromosome partitioning protein ParA 198550 12293036 Deval_3252 Desulfovibrio vulgaris RCH1 putative chromosome partitioning protein ParA YP_005704029.1 197732 D 573059 CDS YP_005704030.1 387134040 12293037 198601..201996 1 NC_017311.1 KEGG: sce:YIR019C GPI-anchored cell surface glycoprotein (flocculin) required for pseudohyphal formation, invasive growth, flocculation, and biofilms; transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p); hypothetical protein 201996 12293037 Deval_3253 Desulfovibrio vulgaris RCH1 hypothetical protein YP_005704030.1 198601 D 573059 CDS