-- dump date 20140619_064829 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_009226.1 46578418 2794438 151..1464 1 NC_002937.3 identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 1464 dnaA-1 2794438 dnaA-1 Desulfovibrio vulgaris str. Hildenborough chromosomal replication initiator protein DnaA YP_009226.1 151 D 882 CDS YP_009227.1 46578419 2794971 1610..2764 1 NC_002937.3 identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 2764 dnaN 2794971 dnaN Desulfovibrio vulgaris str. Hildenborough DNA polymerase III subunit beta YP_009227.1 1610 D 882 CDS YP_009228.1 46578420 2794972 2766..5162 1 NC_002937.3 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 5162 gyrB 2794972 gyrB Desulfovibrio vulgaris str. Hildenborough DNA gyrase subunit B YP_009228.1 2766 D 882 CDS YP_009229.1 46578421 2794973 5262..7832 1 NC_002937.3 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 7832 gyrA 2794973 gyrA Desulfovibrio vulgaris str. Hildenborough DNA gyrase subunit A YP_009229.1 5262 D 882 CDS YP_009230.1 46578422 2794228 7835..8620 1 NC_002937.3 lipoprotein 8620 2794228 DVU0005 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009230.1 7835 D 882 CDS YP_009231.1 46578423 2794229 complement(8913..9377) 1 NC_002937.3 identified by match to protein family HMM PF00582; universal stress protein 9377 2794229 DVU0006 Desulfovibrio vulgaris str. Hildenborough universal stress protein YP_009231.1 8913 R 882 CDS YP_009232.1 46578424 2793559 complement(9552..10937) 1 NC_002937.3 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 10937 asnC 2793559 asnC Desulfovibrio vulgaris str. Hildenborough asparaginyl-tRNA synthetase YP_009232.1 9552 R 882 CDS YP_009233.1 46578425 2793560 complement(11095..11220) 1 NC_002937.3 hypothetical protein 11220 2793560 DVU0008 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009233.1 11095 R 882 CDS YP_009234.1 46578426 2796536 complement(11681..12961) 1 NC_002937.3 identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786; TRAP C4-dicarboxylate transport system permease DctM 12961 2796536 DVU0009 Desulfovibrio vulgaris str. Hildenborough TRAP C4-dicarboxylate transport system permease DctM YP_009234.1 11681 R 882 CDS YP_009235.1 46578427 2796537 complement(12958..13524) 1 NC_002937.3 identified by match to protein family HMM PF04290; TRAP C4-dicarboxylate transport system subunit DctQ 13524 2796537 DVU0010 Desulfovibrio vulgaris str. Hildenborough TRAP C4-dicarboxylate transport system subunit DctQ YP_009235.1 12958 R 882 CDS YP_009236.1 46578428 2796415 complement(13586..14611) 1 NC_002937.3 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate family transporter subunit DctP 14611 2796415 DVU0011 Desulfovibrio vulgaris str. Hildenborough TRAP dicarboxylate family transporter subunit DctP YP_009236.1 13586 R 882 CDS YP_009237.1 46578429 2796416 15099..16301 1 NC_002937.3 hypothetical protein 16301 2796416 DVU0012 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009237.1 15099 D 882 CDS YP_009238.1 46578430 2794453 16462..18270 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 18270 2794453 DVU0013 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009238.1 16462 D 882 CDS YP_009239.1 46578431 2794454 complement(18470..18688) 1 NC_002937.3 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 18688 infA 2794454 infA Desulfovibrio vulgaris str. Hildenborough translation initiation factor IF-1 YP_009239.1 18470 R 882 CDS YP_009240.1 46578432 2796547 complement(18804..19595) 1 NC_002937.3 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 19595 lgt 2796547 lgt Desulfovibrio vulgaris str. Hildenborough prolipoprotein diacylglyceryl transferase YP_009240.1 18804 R 882 CDS YP_009241.1 46578433 2796548 19735..19839 1 NC_002937.3 hypothetical protein 19839 2796548 DVU0016 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009241.1 19735 D 882 CDS YP_009242.1 46578434 2794278 complement(19976..20152) 1 NC_002937.3 hypothetical protein 20152 2794278 DVU0017 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009242.1 19976 R 882 CDS YP_009243.1 46578435 2794279 20136..22385 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 22385 2794279 DVU0018 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009243.1 20136 D 882 CDS YP_009244.1 46578436 2794280 complement(22502..23110) 1 NC_002937.3 identified by similarity to SP:P30820; match to protein family HMM PF00301; match to protein family HMM PF02915; nigerythrin 23110 ngr 2794280 ngr Desulfovibrio vulgaris str. Hildenborough nigerythrin YP_009244.1 22502 R 882 CDS YP_009245.1 46578437 2794952 complement(23221..23367) 1 NC_002937.3 hypothetical protein 23367 2794952 DVU0020 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009245.1 23221 R 882 CDS YP_009246.1 46578438 2794953 complement(23612..24658) 1 NC_002937.3 identified by similarity to OMNI:AF0308; hypothetical protein 24658 2794953 DVU0021 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009246.1 23612 R 882 CDS YP_009247.1 46578439 2794596 complement(24857..27238) 1 NC_002937.3 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; HAMP domain/GGDEF domain/EAL domain-containing protein 27238 2794596 DVU0022 Desulfovibrio vulgaris str. Hildenborough HAMP domain/GGDEF domain/EAL domain-containing protein YP_009247.1 24857 R 882 CDS YP_009248.1 46578440 2794597 27228..27425 1 NC_002937.3 hypothetical protein 27425 2794597 DVU0023 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009248.1 27228 D 882 CDS YP_009249.1 46578441 2793531 27468..27638 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0251; hypothetical protein 27638 2793531 DVU0024 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009249.1 27468 D 882 CDS YP_009250.1 46578442 2793532 complement(27714..29873) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 29873 2793532 DVU0025 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009250.1 27714 R 882 CDS YP_009251.1 46578443 2796782 30487..31059 1 NC_002937.3 identified by similarity to SP:O31482; hypothetical protein 31059 2796782 DVU0026 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009251.1 30487 D 882 CDS YP_009252.1 46578444 2794135 complement(31278..32702) 1 NC_002937.3 identified by similarity to OMNI:NTL02ML3762; hypothetical protein 32702 2794135 DVU0027 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009252.1 31278 R 882 CDS YP_009253.1 46578445 2794136 33232..33609 1 NC_002937.3 identified by similarity to SP:P37584; match to protein family HMM PF01588; chaperone CsaA 33609 csaA 2794136 csaA Desulfovibrio vulgaris str. Hildenborough chaperone CsaA YP_009253.1 33232 D 882 CDS YP_009254.1 46578446 2793647 33986..35698 1 NC_002937.3 identified by similarity to OMNI:NTL02MA4447; match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoinase/oxoprolinase 35698 2793647 DVU0029 Desulfovibrio vulgaris str. Hildenborough hydantoinase/oxoprolinase YP_009254.1 33986 D 882 CDS YP_003858602.1 304569754 9714863 35979..36176 1 NC_002937.3 hypothetical protein 36176 9714863 DVU4013 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858602.1 35979 D 882 CDS YP_009255.1 46578447 2793310 complement(36482..37984) 1 NC_002937.3 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 37984 2793310 DVU0030 Desulfovibrio vulgaris str. Hildenborough GntR family transcriptional regulator YP_009255.1 36482 R 882 CDS YP_009256.2 304569673 2793311 38186..39172 1 NC_002937.3 identified by match to protein family HMM PF03591; AzlC family protein 39172 2793311 DVU0031 Desulfovibrio vulgaris str. Hildenborough AzlC family protein YP_009256.2 38186 D 882 CDS YP_009257.1 46578449 2795101 39162..39497 1 NC_002937.3 identified by similarity to OMNI:NTL01LM1435; match to protein family HMM PF06063; hypothetical protein 39497 2795101 DVU0032 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009257.1 39162 D 882 CDS YP_009258.1 46578450 2795102 39764..40378 1 NC_002937.3 identified by match to protein family HMM PF00857; isochorismatase 40378 2795102 DVU0033 Desulfovibrio vulgaris str. Hildenborough isochorismatase YP_009258.1 39764 D 882 CDS YP_009259.1 46578451 2796462 40526..41311 1 NC_002937.3 identified by match to protein family HMM PF01323; DSBA-like thioredoxin domain-containing protein 41311 2796462 DVU0034 Desulfovibrio vulgaris str. Hildenborough DSBA-like thioredoxin domain-containing protein YP_009259.1 40526 D 882 CDS YP_009260.1 46578452 2796463 complement(41700..41873) 1 NC_002937.3 hypothetical protein 41873 2796463 DVU0035 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009260.1 41700 R 882 CDS YP_009261.1 46578453 2796464 complement(42287..42742) 1 NC_002937.3 hypothetical protein 42742 2796464 DVU0036 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009261.1 42287 R 882 CDS YP_009262.1 46578454 2796635 complement(42924..43340) 1 NC_002937.3 identified by similarity to OMNI:NTL01TT1568; match to protein family HMM PF04463; hypothetical protein 43340 2796635 DVU0037 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009262.1 42924 R 882 CDS YP_009263.1 46578455 2796636 complement(43678..45528) 1 NC_002937.3 identified by match to protein family HMM PF01553; acyltransferase domain-containing protein 45528 2796636 DVU0038 Desulfovibrio vulgaris str. Hildenborough acyltransferase domain-containing protein YP_009263.1 43678 R 882 CDS YP_009264.1 46578456 2796560 45740..46270 1 NC_002937.3 identified by match to protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 46270 2796560 DVU0039 Desulfovibrio vulgaris str. Hildenborough C4-type zinc finger DksA/TraR family protein YP_009264.1 45740 D 882 CDS YP_009265.1 46578457 2796561 46450..47064 1 NC_002937.3 hypothetical protein 47064 2796561 DVU0040 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009265.1 46450 D 882 CDS YP_009266.1 46578458 2796562 complement(47257..49020) 1 NC_002937.3 identified by similarity to OMNI:SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476; Slt family transglycosylase 49020 2796562 DVU0041 Desulfovibrio vulgaris str. Hildenborough Slt family transglycosylase YP_009266.1 47257 R 882 CDS YP_009267.2 304569674 2796581 49163..50314 1 NC_002937.3 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase 50314 2796581 DVU0042 Desulfovibrio vulgaris str. Hildenborough RNA methyltransferase YP_009267.2 49163 D 882 CDS YP_009268.1 46578460 2796752 complement(50554..50823) 1 NC_002937.3 identified by similarity to SP:P33134; match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthetic protein FliQ 50823 fliQ 2796752 fliQ Desulfovibrio vulgaris str. Hildenborough flagellar biosynthetic protein FliQ YP_009268.1 50554 R 882 CDS YP_009269.1 46578461 2796753 complement(50840..51547) 1 NC_002937.3 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 51547 fliP 2796753 fliP Desulfovibrio vulgaris str. Hildenborough flagellar biosynthesis protein FliP YP_009269.1 50840 R 882 CDS YP_009270.1 46578462 2796754 complement(51576..52097) 1 NC_002937.3 flagellar biosynthesis protein, FliO 52097 2796754 DVU0045 Desulfovibrio vulgaris str. Hildenborough flagellar biosynthesis protein, FliO YP_009270.1 51576 R 882 CDS YP_009271.1 46578463 2794699 complement(52090..52602) 1 NC_002937.3 identified by similarity to SP:P15070; match to protein family HMM PF01052; flagellar motor switch protein FliN 52602 fliN 2794699 fliN Desulfovibrio vulgaris str. Hildenborough flagellar motor switch protein FliN YP_009271.1 52090 R 882 CDS YP_009272.1 46578464 2794700 complement(52628..53143) 1 NC_002937.3 identified by similarity to SP:P23452; match to protein family HMM PF03748; flagellar protein FliL 53143 2794700 DVU0047 Desulfovibrio vulgaris str. Hildenborough flagellar protein FliL YP_009272.1 52628 R 882 CDS YP_009273.1 46578465 2793673 complement(53164..53904) 1 NC_002937.3 identified by similarity to SP:O07887; match to protein family HMM PF00691; chemotaxis protein MotB 53904 2793673 DVU0048 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein MotB YP_009273.1 53164 R 882 CDS YP_009274.1 46578466 2793674 complement(53901..54995) 1 NC_002937.3 identified by similarity to SP:O07887; match to protein family HMM PF00691; OmpA family protein 54995 2793674 DVU0049 Desulfovibrio vulgaris str. Hildenborough OmpA family protein YP_009274.1 53901 R 882 CDS YP_009275.1 46578467 2794510 complement(55007..55765) 1 NC_002937.3 identified by similarity to SP:P28611; match to protein family HMM PF01618; chemotaxis protein MotA 55765 motA-1 2794510 motA-1 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein MotA YP_009275.1 55007 R 882 CDS YP_009276.2 304569675 2794511 complement(56041..56769) 1 NC_002937.3 identified by similarity to SP:O66631; match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 56769 2794511 DVU0051 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009276.2 56041 R 882 CDS YP_009277.1 46578469 2794512 complement(56847..57773) 1 NC_002937.3 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 57773 era 2794512 era Desulfovibrio vulgaris str. Hildenborough GTP-binding protein Era YP_009277.1 56847 R 882 CDS YP_009278.2 304569676 2795764 58041..60077 1 NC_002937.3 identified by similarity to OMNI:CT0714; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease 60077 2795764 DVU0053 Desulfovibrio vulgaris str. Hildenborough sulfate permease YP_009278.2 58041 D 882 CDS YP_009279.1 46578471 2795765 60507..61766 1 NC_002937.3 identified by match to protein family HMM PF01207; dihydrouridine synthase 61766 2795765 DVU0054 Desulfovibrio vulgaris str. Hildenborough dihydrouridine synthase YP_009279.1 60507 D 882 CDS YP_009280.1 46578472 2794178 61763..62635 1 NC_002937.3 identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216; hydroxymethylbutenyl pyrophosphate reductase 62635 ispH 2794178 ispH Desulfovibrio vulgaris str. Hildenborough hydroxymethylbutenyl pyrophosphate reductase YP_009280.1 61763 D 882 CDS YP_009281.1 46578473 2794179 62676..63629 1 NC_002937.3 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 63629 cheV-1 2794179 cheV-1 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheV YP_009281.1 62676 D 882 CDS YP_009282.1 46578474 2793369 63889..64530 1 NC_002937.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 64530 2793369 DVU0057 Desulfovibrio vulgaris str. Hildenborough TetR family transcriptional regulator YP_009282.1 63889 D 882 CDS YP_009283.1 46578475 2793370 64527..65678 1 NC_002937.3 identified by similarity to OMNI:CC1787; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 65678 2793370 DVU0058 Desulfovibrio vulgaris str. Hildenborough RND family efflux transporter MFP subunit YP_009283.1 64527 D 882 CDS YP_009284.1 46578476 2793371 65675..69385 1 NC_002937.3 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 69385 2793371 DVU0059 Desulfovibrio vulgaris str. Hildenborough AcrB/AcrD/AcrF family protein YP_009284.1 65675 D 882 CDS YP_009285.1 46578477 2796165 69540..70724 1 NC_002937.3 identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 70724 2796165 DVU0060 Desulfovibrio vulgaris str. Hildenborough RND family efflux transporter MFP subunit YP_009285.1 69540 D 882 CDS YP_009286.1 46578478 2794399 70740..73880 1 NC_002937.3 identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915; multidrug resistance protein 73880 2794399 DVU0061 Desulfovibrio vulgaris str. Hildenborough multidrug resistance protein YP_009286.1 70740 D 882 CDS YP_009287.1 46578479 2796166 73877..75391 1 NC_002937.3 identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 75391 2796166 DVU0062 Desulfovibrio vulgaris str. Hildenborough RND efflux system outer membrane lipoprotein YP_009287.1 73877 D 882 CDS YP_009288.1 46578480 2793612 75421..75861 1 NC_002937.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 75861 2793612 DVU0063 Desulfovibrio vulgaris str. Hildenborough MarR family transcriptional regulator YP_009288.1 75421 D 882 CDS YP_009289.1 46578481 2793613 75950..76858 1 NC_002937.3 hypothetical protein 76858 2793613 DVU0064 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009289.1 75950 D 882 CDS YP_009290.1 46578482 2795212 77110..77907 1 NC_002937.3 hypothetical protein 77907 2795212 DVU0065 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009290.1 77110 D 882 CDS YP_009291.1 46578483 2795213 78122..78691 1 NC_002937.3 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase domain-containing protein 78691 2795213 DVU0066 Desulfovibrio vulgaris str. Hildenborough cytidine/deoxycytidylate deaminase domain-containing protein YP_009291.1 78122 D 882 CDS YP_009292.1 46578484 2795214 complement(78862..79170) 1 NC_002937.3 hypothetical protein 79170 2795214 DVU0067 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009292.1 78862 R 882 CDS YP_009293.1 46578485 2796766 complement(79547..81082) 1 NC_002937.3 identified by similarity to OMNI:NTL01PF0547; hypothetical protein 81082 2796766 DVU0068 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009293.1 79547 R 882 CDS YP_009294.1 46578486 2796767 complement(81263..85666) 1 NC_002937.3 hypothetical protein 85666 2796767 DVU0069 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009294.1 81263 R 882 CDS YP_009295.1 46578487 2794173 complement(85666..87021) 1 NC_002937.3 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 87021 2794173 DVU0070 Desulfovibrio vulgaris str. Hildenborough Ser/Thr protein phosphatase YP_009295.1 85666 R 882 CDS YP_009296.1 46578488 2794886 87539..88699 1 NC_002937.3 identified by similarity to SP:Q47155; match to protein family HMM PF00817; DNA polymerase IV 88699 dinP 2794886 dinP Desulfovibrio vulgaris str. Hildenborough DNA polymerase IV YP_009296.1 87539 D 882 CDS YP_009297.1 46578489 2794887 89105..89884 1 NC_002937.3 identified by similarity to SP:P26396; match to protein family HMM PF00483; glucose-1-phosphate cytidylyltransferase 89884 2794887 DVU0072 Desulfovibrio vulgaris str. Hildenborough glucose-1-phosphate cytidylyltransferase YP_009297.1 89105 D 882 CDS YP_009298.1 46578490 2794888 89894..91000 1 NC_002937.3 identified by similarity to GP:1197641; CDP-glucose-4,6-dehydratase 91000 2794888 DVU0073 Desulfovibrio vulgaris str. Hildenborough CDP-glucose-4,6-dehydratase YP_009298.1 89894 D 882 CDS YP_009299.1 46578491 2795013 90988..91431 1 NC_002937.3 identified by similarity to SP:P39631; polysaccharide biosynthesis domain-containing protein 91431 2795013 DVU0074 Desulfovibrio vulgaris str. Hildenborough polysaccharide biosynthesis domain-containing protein YP_009299.1 90988 D 882 CDS YP_009300.1 46578492 2795014 91765..92898 1 NC_002937.3 identified by match to protein family HMM PF01041; aminotransferase 92898 2795014 DVU0075 Desulfovibrio vulgaris str. Hildenborough aminotransferase YP_009300.1 91765 D 882 CDS YP_009301.2 304569677 2795015 92916..93953 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 93953 2795015 DVU0076 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_009301.2 92916 D 882 CDS YP_009302.1 46578494 2794407 94316..95398 1 NC_002937.3 identified by similarity to GP:27349066; hypothetical protein 95398 2794407 DVU0077 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009302.1 94316 D 882 CDS YP_009303.1 46578495 2794408 95445..95786 1 NC_002937.3 identified by similarity to OMNI:CT0076; hypothetical protein 95786 2794408 DVU0078 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009303.1 95445 D 882 CDS YP_009304.1 46578496 2794409 96159..96962 1 NC_002937.3 identified by similarity to SP:Q06916; match to protein family HMM PF02535; ZIP zinc transporter family protein 96962 2794409 DVU0079 Desulfovibrio vulgaris str. Hildenborough ZIP zinc transporter family protein YP_009304.1 96159 D 882 CDS YP_009305.1 46578497 2794226 97000..98406 1 NC_002937.3 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 98406 fumC 2794226 fumC Desulfovibrio vulgaris str. Hildenborough fumarate hydratase YP_009305.1 97000 D 882 CDS YP_009306.1 46578498 2794227 complement(98559..100289) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 100289 2794227 DVU0081 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_009306.1 98559 R 882 CDS YP_009307.1 46578499 2796749 complement(100383..101975) 1 NC_002937.3 identified by similarity to GP:12543284; hypothetical protein 101975 2796749 DVU0082 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009307.1 100383 R 882 CDS YP_009308.1 46578500 2796750 102105..102524 1 NC_002937.3 identified by similarity to OMNI:NTL01TE1132; match to protein family HMM PF03745; hypothetical protein 102524 2796750 DVU0083 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009308.1 102105 D 882 CDS YP_009309.1 46578501 2796751 complement(102596..103648) 1 NC_002937.3 identified by match to protein family HMM PF01008; match to protein family HMM TIGR00524; aIF-2BI family translation initiation factor 103648 2796751 DVU0084 Desulfovibrio vulgaris str. Hildenborough aIF-2BI family translation initiation factor YP_009309.1 102596 R 882 CDS YP_009310.1 46578502 2793579 104165..105409 1 NC_002937.3 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 105409 trpB-1 2793579 trpB-1 Desulfovibrio vulgaris str. Hildenborough tryptophan synthase subunit beta YP_009310.1 104165 D 882 CDS YP_009311.1 46578503 2793580 complement(105446..105667) 1 NC_002937.3 hypothetical protein 105667 2793580 DVU0086 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009311.1 105446 R 882 CDS YP_009312.1 46578504 2794253 111902..112396 1 NC_002937.3 identified by similarity to GP:29897211; match to protein family HMM PF06196; hypothetical protein 112396 2794253 DVU0087 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009312.1 111902 D 882 CDS YP_009313.1 46578505 2794639 112393..113880 1 NC_002937.3 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 113880 panF 2794639 panF Desulfovibrio vulgaris str. Hildenborough sodium/panthothenate symporter YP_009313.1 112393 D 882 CDS YP_009314.1 46578506 2794640 complement(113936..114739) 1 NC_002937.3 identified by similarity to OMNI:VCA0583; hypothetical protein 114739 2794640 DVU0089 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009314.1 113936 R 882 CDS YP_009315.1 46578507 2794641 115316..116287 1 NC_002937.3 identified by similarity to SP:P32055; GDP-fucose synthetase 116287 wcaG 2794641 wcaG Desulfovibrio vulgaris str. Hildenborough GDP-fucose synthetase YP_009315.1 115316 D 882 CDS YP_009316.1 46578508 2796240 116340..117062 1 NC_002937.3 identified by similarity to OMNI:NTL01SS01089; hypothetical protein 117062 2796240 DVU0091 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009316.1 116340 D 882 CDS YP_009317.1 46578509 2796241 complement(117119..120436) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 120436 2796241 DVU0092 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009317.1 117119 R 882 CDS YP_009318.1 46578510 2796242 complement(120692..123142) 1 NC_002937.3 identified by match to protein family HMM PF00534; match to protein family HMM PF02231; glycosyl transferase domain-containing protein 123142 2796242 DVU0093 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase domain-containing protein YP_009318.1 120692 R 882 CDS YP_009319.1 46578511 2796243 123374..125536 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 125536 2796243 DVU0094 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009319.1 123374 D 882 CDS YP_009320.1 46578512 2796175 complement(125677..126714) 1 NC_002937.3 identified by similarity to SP:P23861; match to protein family HMM PF01547; polyamine ABC transporter periplasmic polyamine-binding protein 126714 2796175 DVU0095 Desulfovibrio vulgaris str. Hildenborough polyamine ABC transporter periplasmic polyamine-binding protein YP_009320.1 125677 R 882 CDS YP_009321.1 46578513 2796176 complement(126716..127489) 1 NC_002937.3 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter 127489 potC 2796176 potC Desulfovibrio vulgaris str. Hildenborough spermidine/putrescine ABC transporter YP_009321.1 126716 R 882 CDS YP_009322.1 46578514 2796177 complement(127492..128379) 1 NC_002937.3 identified by similarity to SP:P23860; match to protein family HMM PF00528; polyamine ABC transporter permease 128379 potB 2796177 potB Desulfovibrio vulgaris str. Hildenborough polyamine ABC transporter permease YP_009322.1 127492 R 882 CDS YP_009323.1 46578515 2796544 complement(128366..129472) 1 NC_002937.3 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 129472 potA 2796544 potA Desulfovibrio vulgaris str. Hildenborough putrescine/spermidine ABC transporter ATPase YP_009323.1 128366 R 882 CDS YP_009324.1 46578516 2796545 complement(129890..131050) 1 NC_002937.3 identified by similarity to SP:P02929; match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 131050 2796545 DVU0099 Desulfovibrio vulgaris str. Hildenborough TonB domain-containing protein YP_009324.1 129890 R 882 CDS YP_009325.1 46578517 2796546 131347..133296 1 NC_002937.3 identified by match to protein family HMM PF00593; TonB-dependent receptor 133296 2796546 DVU0100 Desulfovibrio vulgaris str. Hildenborough TonB-dependent receptor YP_009325.1 131347 D 882 CDS YP_009326.1 46578518 2793699 133407..134933 1 NC_002937.3 identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 134933 2793699 DVU0101 Desulfovibrio vulgaris str. Hildenborough UbiE/COQ5 family methlytransferase YP_009326.1 133407 D 882 CDS YP_009327.1 46578519 2793700 135121..136113 1 NC_002937.3 identified by match to protein family HMM PF01297; cation ABC transporter periplasmic binding protein 136113 2793700 DVU0102 Desulfovibrio vulgaris str. Hildenborough cation ABC transporter periplasmic binding protein YP_009327.1 135121 D 882 CDS YP_009328.1 46578520 2793701 136146..137087 1 NC_002937.3 identified by similarity to OMNI:NTL02SC0434; match to protein family HMM PF00005; cation ABC transporter ATP-binding protein 137087 2793701 DVU0103 Desulfovibrio vulgaris str. Hildenborough cation ABC transporter ATP-binding protein YP_009328.1 136146 D 882 CDS YP_009329.1 46578521 2793702 137096..137932 1 NC_002937.3 identified by similarity to SP:P44661; match to protein family HMM PF00950; cation ABC transporter permease 137932 2793702 DVU0104 Desulfovibrio vulgaris str. Hildenborough cation ABC transporter permease YP_009329.1 137096 D 882 CDS YP_009330.1 46578522 2795642 complement(138176..138910) 1 NC_002937.3 identified by similarity to SP:P10346; match to protein family HMM PF00005; glutamine ABC transporter ATP-binding protein 138910 2795642 DVU0105 Desulfovibrio vulgaris str. Hildenborough glutamine ABC transporter ATP-binding protein YP_009330.1 138176 R 882 CDS YP_009331.1 46578523 2795643 complement(138984..139655) 1 NC_002937.3 identified by similarity to SP:P10345; match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease 139655 glnP 2795643 glnP Desulfovibrio vulgaris str. Hildenborough glutamine ABC transporter permease YP_009331.1 138984 R 882 CDS YP_009332.1 46578524 2795644 complement(139770..140519) 1 NC_002937.3 identified by similarity to SP:P10344; match to protein family HMM PF00497; glutamine ABC transporter periplasmic glutamine-binding protein 140519 glnH 2795644 glnH Desulfovibrio vulgaris str. Hildenborough glutamine ABC transporter periplasmic glutamine-binding protein YP_009332.1 139770 R 882 CDS YP_009333.1 46578525 2793307 complement(140811..140918) 1 NC_002937.3 hypothetical protein 140918 2793307 DVU0108 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009333.1 140811 R 882 CDS YP_009334.1 46578526 2793308 141455..142687 1 NC_002937.3 identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 142687 2793308 DVU0109 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_009334.1 141455 D 882 CDS YP_009335.1 46578527 2793309 142672..144102 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 144102 2793309 DVU0110 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_009335.1 142672 D 882 CDS YP_009336.1 46578528 2794980 144236..145042 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 145042 2794980 DVU0111 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009336.1 144236 D 882 CDS YP_009337.1 46578529 2794981 145051..146475 1 NC_002937.3 identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase 146475 2794981 DVU0112 Desulfovibrio vulgaris str. Hildenborough deoxyribodipyrimidine photolyase YP_009337.1 145051 D 882 CDS YP_009338.1 46578530 2794982 147117..147497 1 NC_002937.3 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 147497 hisI 2794982 hisI Desulfovibrio vulgaris str. Hildenborough phosphoribosyl-AMP cyclohydrolase YP_009338.1 147117 D 882 CDS YP_009339.1 46578531 2794983 147494..148375 1 NC_002937.3 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 148375 hisG 2794983 hisG Desulfovibrio vulgaris str. Hildenborough ATP phosphoribosyltransferase YP_009339.1 147494 D 882 CDS YP_009340.1 46578532 2794719 148475..149380 1 NC_002937.3 identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 149380 aroE 2794719 aroE Desulfovibrio vulgaris str. Hildenborough shikimate 5-dehydrogenase YP_009340.1 148475 D 882 CDS YP_009341.1 46578533 2794720 149719..150795 1 NC_002937.3 identified by match to protein family HMM PF01522; polysaccharide deacetylase 150795 2794720 DVU0116 Desulfovibrio vulgaris str. Hildenborough polysaccharide deacetylase YP_009341.1 149719 D 882 CDS YP_009342.1 46578534 2794721 complement(150843..151760) 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 151760 2794721 DVU0117 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_009342.1 150843 R 882 CDS YP_009343.1 46578535 2796783 complement(152047..153411) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 153411 2796783 DVU0118 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_009343.1 152047 R 882 CDS YP_009344.1 46578536 2796784 complement(153408..155072) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 155072 2796784 DVU0119 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_009344.1 153408 R 882 CDS YP_009345.1 46578537 2796785 complement(155069..156007) 1 NC_002937.3 identified by similarity to SP:P16682; ABC transporter substrate-binding protein 156007 2796785 DVU0120 Desulfovibrio vulgaris str. Hildenborough ABC transporter substrate-binding protein YP_009345.1 155069 R 882 CDS YP_009346.1 46578538 2796786 complement(156057..156500) 1 NC_002937.3 identified by similarity to OMNI:NTL01MT00980; hypothetical protein 156500 2796786 DVU0121 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009346.1 156057 R 882 CDS YP_009347.1 46578539 2794728 complement(156582..156680) 1 NC_002937.3 hypothetical protein 156680 2794728 DVU0122 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009347.1 156582 R 882 CDS YP_009348.1 46578540 2794729 complement(156693..157775) 1 NC_002937.3 identified by similarity to OMNI:NTL02ML1727; match to protein family HMM PF03601; hypothetical protein 157775 2794729 DVU0123 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009348.1 156693 R 882 CDS YP_009349.1 46578541 2794730 157822..158010 1 NC_002937.3 hypothetical protein 158010 2794730 DVU0124 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009349.1 157822 D 882 CDS YP_009350.1 46578542 2794299 158213..159346 1 NC_002937.3 hypothetical protein 159346 2794299 DVU0125 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009350.1 158213 D 882 CDS YP_009351.1 46578543 2794300 159343..162858 1 NC_002937.3 identified by similarity to SP:P37624; match to protein family HMM PF00005; ABC transporter ATP-binding protein 162858 2794300 DVU0126 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_009351.1 159343 D 882 CDS YP_009352.1 46578544 2794301 162862..163974 1 NC_002937.3 identified by similarity to SP:P75774; hypothetical protein 163974 2794301 DVU0127 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009352.1 162862 D 882 CDS YP_009353.1 46578545 2794302 complement(164190..165248) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA01626; match to protein family HMM PF01594; hypothetical protein 165248 2794302 DVU0128 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009353.1 164190 R 882 CDS YP_009354.1 46578546 2794479 165493..166851 1 NC_002937.3 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277; sensory box protein 166851 2794479 DVU0129 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_009354.1 165493 D 882 CDS YP_009355.1 46578547 2794480 complement(167030..167692) 1 NC_002937.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 167692 2794480 DVU0130 Desulfovibrio vulgaris str. Hildenborough phosphoglycolate phosphatase YP_009355.1 167030 R 882 CDS YP_009356.1 46578548 2794481 complement(167947..168069) 1 NC_002937.3 hypothetical protein 168069 2794481 DVU0131 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009356.1 167947 R 882 CDS YP_009357.1 46578549 2794155 168235..169359 1 NC_002937.3 identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925; hypothetical protein 169359 2794155 DVU0132 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009357.1 168235 D 882 CDS YP_009358.1 46578550 2794156 169361..170083 1 NC_002937.3 hypothetical protein 170083 2794156 DVU0133 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009358.1 169361 D 882 CDS YP_009359.1 46578551 2794157 complement(170444..171481) 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 171481 2794157 DVU0134 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_009359.1 170444 R 882 CDS YP_009360.1 46578552 2794158 complement(171562..172473) 1 NC_002937.3 identified by similarity to OMNI:NTL01AA00924; hypothetical protein 172473 2794158 DVU0135 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009360.1 171562 R 882 CDS YP_009361.1 46578553 2794159 complement(172638..172856) 1 NC_002937.3 hypothetical protein 172856 2794159 DVU0136 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009361.1 172638 R 882 CDS YP_009362.1 46578554 2793576 complement(172910..173035) 1 NC_002937.3 hypothetical protein 173035 2793576 DVU0137 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009362.1 172910 R 882 CDS YP_009363.1 46578555 2793577 173086..173466 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 173466 2793577 DVU0138 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009363.1 173086 D 882 CDS YP_009364.1 46578556 2793578 173772..175484 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 175484 2793578 DVU0139 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_009364.1 173772 D 882 CDS YP_009365.1 46578557 2796556 175592..176005 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 176005 2796556 DVU0140 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009365.1 175592 D 882 CDS YP_009366.1 46578558 2796557 176335..177009 1 NC_002937.3 identified by match to protein family HMM PF02163; M50 family peptidase 177009 2796557 DVU0141 Desulfovibrio vulgaris str. Hildenborough M50 family peptidase YP_009366.1 176335 D 882 CDS YP_009367.1 46578559 2796558 177038..178027 1 NC_002937.3 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 178027 trpS 2796558 trpS Desulfovibrio vulgaris str. Hildenborough tryptophanyl-tRNA synthetase YP_009367.1 177038 D 882 CDS YP_009368.1 46578560 2796559 178039..178815 1 NC_002937.3 identified by similarity to OMNI:CT0872; match to protein family HMM PF03692; hypothetical protein 178815 2796559 DVU0143 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009368.1 178039 D 882 CDS YP_009369.1 46578561 2796577 179041..179643 1 NC_002937.3 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; cytidyltransferase-like protein 179643 2796577 DVU0144 Desulfovibrio vulgaris str. Hildenborough cytidyltransferase-like protein YP_009369.1 179041 D 882 CDS YP_009370.1 46578562 2796578 complement(180029..180436) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 180436 2796578 DVU0145 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009370.1 180029 R 882 CDS YP_009371.1 46578563 2796579 complement(180580..181389) 1 NC_002937.3 hypothetical protein 181389 2796579 DVU0146 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009371.1 180580 R 882 CDS YP_009372.1 46578564 2796580 complement(181386..181646) 1 NC_002937.3 lipoprotein 181646 2796580 DVU0147 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009372.1 181386 R 882 CDS YP_009373.1 46578565 2796745 complement(181719..182330) 1 NC_002937.3 lipoprotein 182330 2796745 DVU0148 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009373.1 181719 R 882 CDS YP_009374.1 46578566 2796746 complement(182353..183405) 1 NC_002937.3 identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925; hypothetical protein 183405 2796746 DVU0149 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009374.1 182353 R 882 CDS YP_009375.1 46578567 2796747 complement(183427..183723) 1 NC_002937.3 hypothetical protein 183723 2796747 DVU0150 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009375.1 183427 R 882 CDS YP_009376.1 46578568 2796748 184043..186916 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF00672; HAMP domain/sigma-54 interaction domain-containing protein 186916 2796748 DVU0151 Desulfovibrio vulgaris str. Hildenborough HAMP domain/sigma-54 interaction domain-containing protein YP_009376.1 184043 D 882 CDS YP_009377.1 46578569 2794925 186986..189547 1 NC_002937.3 identified by similarity to SP:P42850; match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase 189547 2794925 DVU0152 Desulfovibrio vulgaris str. Hildenborough phosphoenolpyruvate synthase YP_009377.1 186986 D 882 CDS YP_009378.1 46578570 2794927 complement(190004..190387) 1 NC_002937.3 hypothetical protein 190387 2794927 DVU0153 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009378.1 190004 R 882 CDS YP_009379.1 46578571 2796696 190401..190568 1 NC_002937.3 hypothetical protein 190568 2796696 DVU0154 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009379.1 190401 D 882 CDS YP_009380.1 46578572 2796697 190855..192243 1 NC_002937.3 identified by match to protein family HMM PF01663; type I phosphodiesterase/nucleotide pyrophosphatase 192243 2796697 DVU0155 Desulfovibrio vulgaris str. Hildenborough type I phosphodiesterase/nucleotide pyrophosphatase YP_009380.1 190855 D 882 CDS YP_009381.1 46578573 2796698 192240..194399 1 NC_002937.3 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 194399 2796698 DVU0156 Desulfovibrio vulgaris str. Hildenborough ATP-dependent DNA helicase UvrD YP_009381.1 192240 D 882 CDS YP_009382.1 46578574 2796699 194396..195367 1 NC_002937.3 identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamin-monophosphate kinase 195367 thiL 2796699 thiL Desulfovibrio vulgaris str. Hildenborough thiamin-monophosphate kinase YP_009382.1 194396 D 882 CDS YP_009383.1 46578575 2795033 195388..196386 1 NC_002937.3 identified by match to protein family HMM PF00596; match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein 196386 2795033 DVU0158 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009383.1 195388 D 882 CDS YP_009384.1 46578576 2795034 complement(196600..197121) 1 NC_002937.3 identified by match to protein family HMM PF03061; thioesterase 197121 2795034 DVU0159 Desulfovibrio vulgaris str. Hildenborough thioesterase YP_009384.1 196600 R 882 CDS YP_009385.1 46578577 2795035 complement(197147..198142) 1 NC_002937.3 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; carbohydrate isomerase KpsF/GutQ family protein 198142 2795035 DVU0160 Desulfovibrio vulgaris str. Hildenborough carbohydrate isomerase KpsF/GutQ family protein YP_009385.1 197147 R 882 CDS YP_009386.1 46578578 2795036 complement(198445..199833) 1 NC_002937.3 identified by similarity to SP:P00497; match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase 199833 purF 2795036 purF Desulfovibrio vulgaris str. Hildenborough amidophosphoribosyltransferase YP_009386.1 198445 R 882 CDS YP_009387.1 46578579 2796778 complement(199861..203094) 1 NC_002937.3 identified by similarity to SP:P00968; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit 203094 carB 2796778 carB Desulfovibrio vulgaris str. Hildenborough carbamoyl-phosphate synthase large subunit YP_009387.1 199861 R 882 CDS YP_009388.1 46578580 2796779 203533..204093 1 NC_002937.3 lipoprotein 204093 2796779 DVU0163 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009388.1 203533 D 882 CDS YP_009389.1 46578581 2796780 204157..205065 1 NC_002937.3 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 205065 2796780 DVU0164 Desulfovibrio vulgaris str. Hildenborough cation efflux family protein YP_009389.1 204157 D 882 CDS YP_009390.1 46578582 2793571 complement(205350..206363) 1 NC_002937.3 identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein 206363 2793571 DVU0165 Desulfovibrio vulgaris str. Hildenborough oligopeptide/dipeptide ABC transporter ATP-binding protein YP_009390.1 205350 R 882 CDS YP_009391.1 46578583 2793572 complement(206374..207360) 1 NC_002937.3 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein 207360 2793572 DVU0166 Desulfovibrio vulgaris str. Hildenborough oligopeptide/dipeptide ABC transporter ATP-binding protein YP_009391.1 206374 R 882 CDS YP_009392.1 46578584 2793573 complement(207363..208283) 1 NC_002937.3 identified by match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease 208283 2793573 DVU0167 Desulfovibrio vulgaris str. Hildenborough oligopeptide/dipeptide ABC transporter permease YP_009392.1 207363 R 882 CDS YP_009393.1 46578585 2793574 complement(208285..209262) 1 NC_002937.3 identified by match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease 209262 2793574 DVU0168 Desulfovibrio vulgaris str. Hildenborough oligopeptide/dipeptide ABC transporter permease YP_009393.1 208285 R 882 CDS YP_009394.1 46578586 2793575 complement(209432..210994) 1 NC_002937.3 identified by match to protein family HMM PF00496; oligopeptide/dipeptide ABC transporter periplasmic oligopeptide/dipeptide-binding protein 210994 2793575 DVU0169 Desulfovibrio vulgaris str. Hildenborough oligopeptide/dipeptide ABC transporter periplasmic oligopeptide/dipeptide-binding protein YP_009394.1 209432 R 882 CDS YP_009395.1 46578587 2795600 211427..213496 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF01814; methyl-accepting chemotaxis protein 213496 2795600 DVU0170 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009395.1 211427 D 882 CDS YP_009396.1 46578588 2795601 complement(213725..214906) 1 NC_002937.3 identified by similarity to GP:1019859; match to protein family HMM PF00155; hemolysin-like protein 214906 2795601 DVU0171 Desulfovibrio vulgaris str. Hildenborough hemolysin-like protein YP_009396.1 213725 R 882 CDS YP_009397.1 46578589 2795602 complement(215484..216485) 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 216485 2795602 DVU0172 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_009397.1 215484 R 882 CDS YP_009398.1 46578590 2795603 complement(216495..218696) 1 NC_002937.3 identified by similarity to SP:P37600; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; thiosulfate reductase 218696 2795603 DVU0173 Desulfovibrio vulgaris str. Hildenborough thiosulfate reductase YP_009398.1 216495 R 882 CDS YP_009399.1 46578591 2795624 complement(218674..218781) 1 NC_002937.3 hypothetical protein 218781 2795624 DVU0174 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009399.1 218674 R 882 CDS YP_009400.1 46578592 2795625 complement(219258..220889) 1 NC_002937.3 identified by similarity to GP:4589921; similarity to OMNI:AF0177; match to protein family HMM PF00994; match to protein family HMM PF02663; tungsten formylmethanofuran dehydrogenase/molybdopterin binding protein 220889 2795625 DVU0175 Desulfovibrio vulgaris str. Hildenborough tungsten formylmethanofuran dehydrogenase/molybdopterin binding protein YP_009400.1 219258 R 882 CDS YP_009401.1 46578593 2795626 complement(221145..222044) 1 NC_002937.3 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 222044 2795626 DVU0176 Desulfovibrio vulgaris str. Hildenborough glycerophosphoryl diester phosphodiesterase YP_009401.1 221145 R 882 CDS YP_009402.1 46578594 2795627 complement(222194..223003) 1 NC_002937.3 identified by similarity to SP:P37329; match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdenum-binding protein 223003 modA 2795627 modA Desulfovibrio vulgaris str. Hildenborough molybdenum ABC transporter periplasmic molybdenum-binding protein YP_009402.1 222194 R 882 CDS YP_009404.2 304569678 2795621 223208..224605 1 NC_002937.3 identified by similarity to SP:Q08385; similarity to OMNI:CC3006; match to protein family HMM PF00589; match to protein family HMM PF03459; match to protein family HMM TIGR00638; fused molybdenum-pterin binding domain-containing protein/site-specific recombinase phage integrase 224605 2795621 DVU0179 Desulfovibrio vulgaris str. Hildenborough fused molybdenum-pterin binding domain-containing protein/site-specific recombinase phage integrase YP_009404.2 223208 D 882 CDS YP_009405.1 46578597 2795622 complement(224592..225353) 1 NC_002937.3 identified by similarity to SP:P37732; match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein 225353 modC 2795622 modC Desulfovibrio vulgaris str. Hildenborough molybdenum ABC transporter ATP-binding protein YP_009405.1 224592 R 882 CDS YP_009406.1 46578598 2795623 complement(225350..226051) 1 NC_002937.3 identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR01095; molybdenum ABC transporter permease 226051 modB 2795623 modB Desulfovibrio vulgaris str. Hildenborough molybdenum ABC transporter permease YP_009406.1 225350 R 882 CDS YP_009407.1 46578599 2795645 complement(226416..227339) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 227339 2795645 DVU0182 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_009407.1 226416 R 882 CDS YP_009408.1 46578600 2795646 complement(227507..229276) 1 NC_002937.3 identified by similarity to OMNI:PP0317; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 229276 2795646 DVU0183 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009408.1 227507 R 882 CDS YP_009409.1 46578601 2795647 229405..229824 1 NC_002937.3 hypothetical protein 229824 2795647 DVU0184 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009409.1 229405 D 882 CDS YP_009410.1 46578602 2795648 229850..229915 1 NC_002937.3 hypothetical protein 229915 2795648 DVU0185 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009410.1 229850 D 882 CDS YP_009411.1 46578603 2795711 230021..230800 1 NC_002937.3 identified by similarity to OMNI:AF2126; match to protein family HMM PF02596; hypothetical protein 230800 2795711 DVU0186 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009411.1 230021 D 882 CDS YP_009412.1 46578604 2795712 complement(231222..232313) 1 NC_002937.3 identified by similarity to SP:P76237; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 232313 2795712 DVU0187 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_009412.1 231222 R 882 CDS YP_009413.1 46578605 2795713 232303..232452 1 NC_002937.3 hypothetical protein 232452 2795713 DVU0188 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009413.1 232303 D 882 CDS YP_009414.1 46578606 2795715 233752..235437 1 NC_002937.3 identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; P4 family phage/plasmid primase 235437 2795715 DVU0189 Desulfovibrio vulgaris str. Hildenborough P4 family phage/plasmid primase YP_009414.1 233752 D 882 CDS YP_009415.1 46578607 2795740 complement(235434..235646) 1 NC_002937.3 hypothetical protein 235646 2795740 DVU0190 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009415.1 235434 R 882 CDS YP_009416.1 46578608 2795741 235704..237263 1 NC_002937.3 identified by similarity to OMNI:CC3049; hypothetical protein 237263 2795741 DVU0191 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009416.1 235704 D 882 CDS YP_009417.1 46578609 2795742 237390..238748 1 NC_002937.3 identified by match to protein family HMM PF01555; match to protein family HMM PF02195; adenine specific DNA methyltransferase 238748 2795742 DVU0192 Desulfovibrio vulgaris str. Hildenborough adenine specific DNA methyltransferase YP_009417.1 237390 D 882 CDS YP_009418.1 46578610 2795743 238741..239472 1 NC_002937.3 hypothetical protein 239472 2795743 DVU0193 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009418.1 238741 D 882 CDS YP_009419.1 46578611 2795744 239489..241447 1 NC_002937.3 identified by similarity to GP:6723224; terminase large subunit 241447 2795744 DVU0194 Desulfovibrio vulgaris str. Hildenborough terminase large subunit YP_009419.1 239489 D 882 CDS YP_009420.1 46578612 2795745 241444..241662 1 NC_002937.3 hypothetical protein 241662 2795745 DVU0195 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009420.1 241444 D 882 CDS YP_009421.1 46578613 2795746 242191..242586 1 NC_002937.3 hypothetical protein 242586 2795746 DVU0196 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009421.1 242191 D 882 CDS YP_009422.1 46578614 2795747 242590..244290 1 NC_002937.3 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; lambda family phage portal protein 244290 2795747 DVU0197 Desulfovibrio vulgaris str. Hildenborough lambda family phage portal protein YP_009422.1 242590 D 882 CDS YP_009423.1 46578615 2795748 244274..245593 1 NC_002937.3 identified by match to protein family HMM PF01343; minor capsid protein C, degenerate 245593 2795748 DVU0198 Desulfovibrio vulgaris str. Hildenborough minor capsid protein C, degenerate YP_009423.1 244274 D 882 CDS YP_009424.1 46578616 2794270 245603..245986 1 NC_002937.3 identified by similarity to OMNI:NTL01RS0859; hypothetical protein 245986 2794270 DVU0199 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009424.1 245603 D 882 CDS YP_009425.1 46578617 2794271 245998..247002 1 NC_002937.3 identified by match to protein family HMM PF03864; major head protein 247002 2794271 DVU0200 Desulfovibrio vulgaris str. Hildenborough major head protein YP_009425.1 245998 D 882 CDS YP_009426.1 46578618 2794272 247011..247331 1 NC_002937.3 hypothetical protein 247331 2794272 DVU0201 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009426.1 247011 D 882 CDS YP_009427.1 46578619 2794273 247334..247822 1 NC_002937.3 identified by match to protein family HMM TIGR01593; holin 247822 2794273 DVU0202 Desulfovibrio vulgaris str. Hildenborough holin YP_009427.1 247334 D 882 CDS YP_009428.1 46578620 2794528 247843..248391 1 NC_002937.3 identified by match to protein family HMM PF05838; hypothetical protein 248391 2794528 DVU0203 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009428.1 247843 D 882 CDS YP_009429.1 46578621 2794529 248409..248819 1 NC_002937.3 lipoprotein 248819 2794529 DVU0204 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009429.1 248409 D 882 CDS YP_009430.1 46578622 2794530 248812..248979 1 NC_002937.3 hypothetical protein 248979 2794530 DVU0205 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009430.1 248812 D 882 CDS YP_009431.1 46578623 2794531 248982..249575 1 NC_002937.3 hypothetical protein 249575 2794531 DVU0206 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009431.1 248982 D 882 CDS YP_009432.1 46578624 2795481 249572..249898 1 NC_002937.3 hypothetical protein 249898 2795481 DVU0207 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009432.1 249572 D 882 CDS YP_009433.1 46578625 2795482 249895..250452 1 NC_002937.3 hypothetical protein 250452 2795482 DVU0208 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009433.1 249895 D 882 CDS YP_009434.1 46578626 2795483 250436..250627 1 NC_002937.3 identified by similarity to GP:1834290; hypothetical protein 250627 2795483 DVU0209 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009434.1 250436 D 882 CDS YP_009435.1 46578627 2795484 250631..252094 1 NC_002937.3 identified by similarity to SP:P79678; tail sheath protein 252094 2795484 DVU0210 Desulfovibrio vulgaris str. Hildenborough tail sheath protein YP_009435.1 250631 D 882 CDS YP_009436.1 46578628 2794505 252144..252509 1 NC_002937.3 identified by similarity to SP:P79679; tail tube protein 252509 2794505 DVU0211 Desulfovibrio vulgaris str. Hildenborough tail tube protein YP_009436.1 252144 D 882 CDS YP_009437.1 46578629 2794506 252509..252769 1 NC_002937.3 identified by similarity to OMNI:NTL03ST4078; hypothetical protein 252769 2794506 DVU0212 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009437.1 252509 D 882 CDS YP_009438.1 46578630 2794507 252969..254459 1 NC_002937.3 hypothetical protein 254459 2794507 DVU0213 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009438.1 252969 D 882 CDS YP_009439.1 46578631 2794508 254468..255667 1 NC_002937.3 identified by similarity to GP:19483753; tail/DNA circulation protein 255667 2794508 DVU0214 Desulfovibrio vulgaris str. Hildenborough tail/DNA circulation protein YP_009439.1 254468 D 882 CDS YP_009440.1 46578632 2794509 255790..256923 1 NC_002937.3 identified by similarity to SP:P08558; tail protein 256923 2794509 DVU0215 Desulfovibrio vulgaris str. Hildenborough tail protein YP_009440.1 255790 D 882 CDS YP_009441.1 46578633 2795069 256925..257563 1 NC_002937.3 identified by match to protein family HMM TIGR01644; phage baseplate assembly protein V 257563 2795069 DVU0216 Desulfovibrio vulgaris str. Hildenborough phage baseplate assembly protein V YP_009441.1 256925 D 882 CDS YP_009442.1 46578634 2795070 257565..258041 1 NC_002937.3 identified by similarity to GP:19483756; tail protein 258041 2795070 DVU0217 Desulfovibrio vulgaris str. Hildenborough tail protein YP_009442.1 257565 D 882 CDS YP_009443.1 46578635 2795071 258050..259111 1 NC_002937.3 identified by similarity to GP:19483757; tail protein 259111 2795071 DVU0218 Desulfovibrio vulgaris str. Hildenborough tail protein YP_009443.1 258050 D 882 CDS YP_009444.1 46578636 2795072 259120..259746 1 NC_002937.3 identified by similarity to GP:19483737; tail protein 259746 2795072 DVU0219 Desulfovibrio vulgaris str. Hildenborough tail protein YP_009444.1 259120 D 882 CDS YP_009445.1 46578637 2795300 259739..260755 1 NC_002937.3 tail fiber protein 260755 2795300 DVU0220 Desulfovibrio vulgaris str. Hildenborough tail fiber protein YP_009445.1 259739 D 882 CDS YP_009446.1 46578638 2795301 260765..261208 1 NC_002937.3 tail fiber assembly protein 261208 2795301 DVU0221 Desulfovibrio vulgaris str. Hildenborough tail fiber assembly protein YP_009446.1 260765 D 882 CDS YP_009447.1 46578639 2795302 261220..261549 1 NC_002937.3 hypothetical protein 261549 2795302 DVU0222 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009447.1 261220 D 882 CDS YP_009448.1 46578640 2795303 261649..261831 1 NC_002937.3 identified by similarity to OMNI:NTL02MA0751; hypothetical protein 261831 2795303 DVU0223 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009448.1 261649 D 882 CDS YP_009449.1 46578641 2796773 261875..262270 1 NC_002937.3 identified by similarity to OMNI:CC3185; hypothetical protein 262270 2796773 DVU0224 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009449.1 261875 D 882 CDS YP_009450.1 46578642 2796774 262334..262510 1 NC_002937.3 hypothetical protein 262510 2796774 DVU0225 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009450.1 262334 D 882 CDS YP_009451.1 46578643 2796775 complement(262657..263796) 1 NC_002937.3 hypothetical protein 263796 2796775 DVU0226 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009451.1 262657 R 882 CDS YP_009452.1 46578644 2796776 complement(263799..264329) 1 NC_002937.3 identified by similarity to OMNI:VC1871; hypothetical protein 264329 2796776 DVU0227 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009452.1 263799 R 882 CDS YP_009453.1 46578645 2796777 264667..264765 1 NC_002937.3 hypothetical protein 264765 2796777 DVU0228 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009453.1 264667 D 882 CDS YP_009454.1 46578646 2794274 complement(265046..265222) 1 NC_002937.3 hypothetical protein 265222 2794274 DVU0229 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009454.1 265046 R 882 CDS YP_009455.1 46578647 2794275 265802..266266 1 NC_002937.3 transcriptional regulator cII 266266 2794275 DVU0230 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator cII YP_009455.1 265802 D 882 CDS YP_009456.1 46578648 2794276 266347..266571 1 NC_002937.3 hypothetical protein 266571 2794276 DVU0231 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009456.1 266347 D 882 CDS YP_009457.1 46578649 2794277 266564..266812 1 NC_002937.3 hypothetical protein 266812 2794277 DVU0232 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009457.1 266564 D 882 CDS YP_009458.1 46578650 2796582 complement(266937..267239) 1 NC_002937.3 hypothetical protein 267239 2796582 DVU0233 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009458.1 266937 R 882 CDS YP_009459.1 46578651 2796583 267982..268305 1 NC_002937.3 hypothetical protein 268305 2796583 DVU0234 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009459.1 267982 D 882 CDS YP_009460.1 46578652 2796584 268308..268871 1 NC_002937.3 hypothetical protein 268871 2796584 DVU0235 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009460.1 268308 D 882 CDS YP_009461.1 46578653 2796585 complement(269283..270425) 1 NC_002937.3 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 270425 2796585 DVU0236 Desulfovibrio vulgaris str. Hildenborough phage integrase site specific recombinase YP_009461.1 269283 R 882 CDS YP_009462.1 46578654 2795009 complement(270666..271940) 1 NC_002937.3 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 271940 serS 2795009 serS Desulfovibrio vulgaris str. Hildenborough seryl-tRNA synthetase YP_009462.1 270666 R 882 CDS YP_009463.1 46578655 2795010 complement(272045..272434) 1 NC_002937.3 hypothetical protein 272434 2795010 DVU0238 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009463.1 272045 R 882 CDS YP_009464.1 46578656 2795011 complement(272556..272792) 1 NC_002937.3 hypothetical protein 272792 2795011 DVU0239 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009464.1 272556 R 882 CDS YP_009465.1 46578657 2795012 complement(272970..273467) 1 NC_002937.3 hypothetical protein 273467 2795012 DVU0240 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009465.1 272970 R 882 CDS YP_009466.1 46578658 2796722 273553..273930 1 NC_002937.3 identified by similarity to SP:P10390; match to protein family HMM PF02579; hypothetical protein 273930 2796722 DVU0241 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009466.1 273553 D 882 CDS YP_009467.1 46578659 2796723 273943..274431 1 NC_002937.3 identified by match to protein family HMM PF02810; SecC motif-containing protein 274431 2796723 DVU0242 Desulfovibrio vulgaris str. Hildenborough SecC motif-containing protein YP_009467.1 273943 D 882 CDS YP_009468.1 46578660 2796724 275444..276112 1 NC_002937.3 identified by similarity to OMNI:NTL01XC3841; lipoprotein 276112 2796724 DVU0243 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009468.1 275444 D 882 CDS YP_009469.1 46578661 2796725 complement(276172..277029) 1 NC_002937.3 hypothetical protein 277029 2796725 DVU0244 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009469.1 276172 R 882 CDS YP_009470.1 46578662 2794293 complement(277059..278168) 1 NC_002937.3 identified by match to protein family HMM PF00782; protein phosphatase 278168 2794293 DVU0245 Desulfovibrio vulgaris str. Hildenborough protein phosphatase YP_009470.1 277059 R 882 CDS YP_009471.1 46578663 2794294 complement(278347..280581) 1 NC_002937.3 identified by similarity to SP:O29548; match to protein family HMM PF00391; match to protein family HMM PF01326; pyruvate phosphate dikinase PEP/pyruvate binding subunit 280581 2794294 DVU0246 Desulfovibrio vulgaris str. Hildenborough pyruvate phosphate dikinase PEP/pyruvate binding subunit YP_009471.1 278347 R 882 CDS YP_009472.1 46578664 2794295 complement(280944..281303) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 281303 2794295 DVU0247 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009472.1 280944 R 882 CDS YP_009473.1 46578665 2794297 complement(283424..284395) 1 NC_002937.3 identified by similarity to OMNI:NTL01NSC0089; hypothetical protein 284395 2794297 DVU0249 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009473.1 283424 R 882 CDS YP_009474.1 46578666 2794298 complement(284703..285290) 1 NC_002937.3 hypothetical protein 285290 2794298 DVU0250 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009474.1 284703 R 882 CDS YP_009475.1 46578667 2794205 complement(285367..286329) 1 NC_002937.3 identified by similarity to OMNI:AF2125; match to protein family HMM PF01925; hypothetical protein 286329 2794205 DVU0251 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009475.1 285367 R 882 CDS YP_009476.1 46578668 2794206 complement(286665..286874) 1 NC_002937.3 hypothetical protein 286874 2794206 DVU0252 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009476.1 286665 R 882 CDS YP_009477.1 46578669 2794207 complement(287022..289847) 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase 289847 2794207 DVU0253 Desulfovibrio vulgaris str. Hildenborough oxidoreductase YP_009477.1 287022 R 882 CDS YP_009478.1 46578670 2794501 complement(290212..290358) 1 NC_002937.3 hypothetical protein 290358 2794501 DVU0254 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009478.1 290212 R 882 CDS YP_009479.1 46578671 2794502 290357..290911 1 NC_002937.3 hypothetical protein 290911 2794502 DVU0255 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009479.1 290357 D 882 CDS YP_009480.1 46578672 2794503 complement(291021..294386) 1 NC_002937.3 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 294386 2794503 DVU0256 Desulfovibrio vulgaris str. Hildenborough DEAD/DEAH box helicase YP_009480.1 291021 R 882 CDS YP_009481.1 46578673 2795004 300822..301286 1 NC_002937.3 identified by match to protein family HMM PF00583; acetyltransferase 301286 2795004 DVU0257 Desulfovibrio vulgaris str. Hildenborough acetyltransferase YP_009481.1 300822 D 882 CDS YP_009482.1 46578674 2794100 complement(301447..303420) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 303420 2794100 DVU0258 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_009482.1 301447 R 882 CDS YP_009483.1 46578675 2794101 complement(303681..304070) 1 NC_002937.3 identified by similarity to SP:P33394; match to protein family HMM PF00072; DNA-binding response regulator 304070 2794101 DVU0259 Desulfovibrio vulgaris str. Hildenborough DNA-binding response regulator YP_009483.1 303681 R 882 CDS YP_009484.1 46578676 2794102 complement(304088..304489) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 304489 2794102 DVU0260 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009484.1 304088 R 882 CDS YP_009485.1 46578677 2794103 complement(304509..305435) 1 NC_002937.3 identified by match to protein family HMM PF00582; universal stress protein 305435 2794103 DVU0261 Desulfovibrio vulgaris str. Hildenborough universal stress protein YP_009485.1 304509 R 882 CDS YP_009486.1 46578678 2794104 complement(305439..305993) 1 NC_002937.3 hypothetical protein 305993 2794104 DVU0262 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009486.1 305439 R 882 CDS YP_009487.1 46578679 2795005 complement(306015..306395) 1 NC_002937.3 identified by similarity to SP:P94690; acidic cytochrome c3 306395 2795005 DVU0263 Desulfovibrio vulgaris str. Hildenborough acidic cytochrome c3 YP_009487.1 306015 R 882 CDS YP_009488.1 46578680 2795006 complement(306421..307740) 1 NC_002937.3 identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754; ferredoxin, 4Fe-4S 307740 2795006 DVU0264 Desulfovibrio vulgaris str. Hildenborough ferredoxin, 4Fe-4S YP_009488.1 306421 R 882 CDS YP_009489.1 46578681 2795007 complement(307760..308419) 1 NC_002937.3 hypothetical protein 308419 2795007 DVU0265 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009489.1 307760 R 882 CDS YP_009490.2 304569679 2795008 complement(308428..309684) 1 NC_002937.3 hypothetical protein 309684 2795008 DVU0266 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009490.2 308428 R 882 CDS YP_009491.1 46578683 2794321 complement(309644..309799) 1 NC_002937.3 hypothetical protein 309799 2794321 DVU0267 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009491.1 309644 R 882 CDS YP_009492.1 46578684 2794322 309898..310038 1 NC_002937.3 hypothetical protein 310038 2794322 DVU0268 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009492.1 309898 D 882 CDS YP_009493.1 46578685 2794323 310226..310723 1 NC_002937.3 identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family transcriptional regulator 310723 2794323 DVU0269 Desulfovibrio vulgaris str. Hildenborough Rrf2 family transcriptional regulator YP_009493.1 310226 D 882 CDS YP_009494.1 46578686 2794324 310963..313233 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 313233 2794324 DVU0270 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009494.1 310963 D 882 CDS YP_009495.1 46578687 2794325 313230..314720 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF02518; response regulator 314720 2794325 DVU0271 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009495.1 313230 D 882 CDS YP_009496.1 46578688 2794997 315017..315112 1 NC_002937.3 hypothetical protein 315112 2794997 DVU0272 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009496.1 315017 D 882 CDS YP_009497.1 46578689 2794998 315149..316666 1 NC_002937.3 identified by similarity to GP:21899254; hypothetical protein 316666 2794998 DVU0273 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009497.1 315149 D 882 CDS YP_009498.1 46578690 2794999 complement(316978..317349) 1 NC_002937.3 hypothetical protein 317349 2794999 DVU0274 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009498.1 316978 R 882 CDS YP_009499.1 46578691 2795000 complement(317644..318339) 1 NC_002937.3 identified by match to protein family HMM PF01522; polysaccharide deacetylase 318339 2795000 DVU0275 Desulfovibrio vulgaris str. Hildenborough polysaccharide deacetylase YP_009499.1 317644 R 882 CDS YP_009500.1 46578692 2795067 complement(319404..319802) 1 NC_002937.3 identified by similarity to OMNI:NTL02ST1965; match to protein family HMM PF03625; hypothetical protein 319802 2795067 DVU0276 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009500.1 319404 R 882 CDS YP_009501.1 46578693 2794208 320357..321337 1 NC_002937.3 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 321337 2794208 DVU0277 Desulfovibrio vulgaris str. Hildenborough AraC family transcriptional regulator YP_009501.1 320357 D 882 CDS YP_009502.1 46578694 2794209 complement(321631..322053) 1 NC_002937.3 identified by similarity to OMNI:NTL01FN1550; match to protein family HMM PF00903; glyoxalase 322053 2794209 DVU0278 Desulfovibrio vulgaris str. Hildenborough glyoxalase YP_009502.1 321631 R 882 CDS YP_009503.1 46578695 2794210 322378..324084 1 NC_002937.3 identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease 324084 2794210 DVU0279 Desulfovibrio vulgaris str. Hildenborough sulfate permease YP_009503.1 322378 D 882 CDS YP_009504.1 46578696 2794211 complement(324397..325536) 1 NC_002937.3 identified by similarity to GP:47012; match to protein family HMM PF00534; glycosyl transferase family protein 325536 2794211 DVU0280 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_009504.1 324397 R 882 CDS YP_009505.1 46578697 2796691 complement(325641..327080) 1 NC_002937.3 identified by match to protein family HMM PF02397; exopolysaccharide biosynthesis protein 327080 2796691 DVU0281 Desulfovibrio vulgaris str. Hildenborough exopolysaccharide biosynthesis protein YP_009505.1 325641 R 882 CDS YP_009506.1 46578698 2796692 complement(327314..328435) 1 NC_002937.3 identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 328435 mutY 2796692 mutY Desulfovibrio vulgaris str. Hildenborough A/G-specific adenine glycosylase YP_009506.1 327314 R 882 CDS YP_009507.1 46578699 2796693 complement(328770..330755) 1 NC_002937.3 identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292; AhpF family protein/thioredoxin reductase 330755 2796693 DVU0283 Desulfovibrio vulgaris str. Hildenborough AhpF family protein/thioredoxin reductase YP_009507.1 328770 R 882 CDS YP_009508.2 304569680 2796694 330771..331277 1 NC_002937.3 identified by similarity to SP:P23869; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 331277 ppiB-1 2796694 ppiB-1 Desulfovibrio vulgaris str. Hildenborough peptidyl-prolyl cis-trans isomerase B YP_009508.2 330771 D 882 CDS YP_009509.1 46578701 2796695 331465..332106 1 NC_002937.3 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 332106 hisH 2796695 hisH Desulfovibrio vulgaris str. Hildenborough imidazole glycerol phosphate synthase subunit HisH YP_009509.1 331465 D 882 CDS YP_009510.1 46578702 2793492 332096..332875 1 NC_002937.3 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 332875 hisF 2793492 hisF Desulfovibrio vulgaris str. Hildenborough imidazole glycerol phosphate synthase subunit HisF YP_009510.1 332096 D 882 CDS YP_003858603.1 304569758 9714862 333042..333728 1 NC_002937.3 hypothetical protein 333728 9714862 DVU4017 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858603.1 333042 D 882 CDS YP_009513.2 304569681 2793495 complement(333951..334577) 1 NC_002937.3 identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C 334577 moaC 2793495 moaC Desulfovibrio vulgaris str. Hildenborough molybdenum cofactor biosynthesis protein C YP_009513.2 333951 R 882 CDS YP_009514.1 46578706 2793496 complement(334593..335201) 1 NC_002937.3 lipoprotein 335201 2793496 DVU0290 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009514.1 334593 R 882 CDS YP_009515.1 46578707 2795946 complement(335226..336290) 1 NC_002937.3 identified by similarity to SP:P16676; match to protein family HMM PF00005; ABC transporter ATP-binding protein 336290 2795946 DVU0291 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_009515.1 335226 R 882 CDS YP_009516.1 46578708 2795947 complement(336275..337381) 1 NC_002937.3 hypothetical protein 337381 2795947 DVU0292 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009516.1 336275 R 882 CDS YP_009517.1 46578709 2795948 337767..338108 1 NC_002937.3 dksA/traR C4-type zinc finger family protein 338108 2795948 DVU0293 Desulfovibrio vulgaris str. Hildenborough dksA/traR C4-type zinc finger family protein YP_009517.1 337767 D 882 CDS YP_009518.1 46578710 2795949 338182..340326 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 340326 2795949 DVU0294 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_009518.1 338182 D 882 CDS YP_009519.1 46578711 2795950 340483..341832 1 NC_002937.3 amine oxidase, flavin-containing 341832 2795950 DVU0295 Desulfovibrio vulgaris str. Hildenborough amine oxidase, flavin-containing YP_009519.1 340483 D 882 CDS YP_009520.1 46578712 2795180 341931..343001 1 NC_002937.3 identified by match to protein family HMM PF00557; M24 family peptidase 343001 2795180 DVU0296 Desulfovibrio vulgaris str. Hildenborough M24 family peptidase YP_009520.1 341931 D 882 CDS YP_009521.1 46578713 2795181 343489..343836 1 NC_002937.3 hypothetical protein 343836 2795181 DVU0297 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009521.1 343489 D 882 CDS YP_009522.1 46578714 2795182 344447..345232 1 NC_002937.3 hypothetical protein 345232 2795182 DVU0298 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009522.1 344447 D 882 CDS YP_003858604.1 304569745 9714861 complement(345305..345463) 1 NC_002937.3 hypothetical protein 345463 9714861 DVU4004 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858604.1 345305 R 882 CDS YP_009523.1 46578715 2795183 complement(345642..347687) 1 NC_002937.3 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 347687 2795183 DVU0299 Desulfovibrio vulgaris str. Hildenborough anaerobic ribonucleoside triphosphate reductase YP_009523.1 345642 R 882 CDS YP_009524.1 46578716 2795184 complement(347569..348306) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 348306 2795184 DVU0300 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_009524.1 347569 R 882 CDS YP_009525.1 46578717 2794557 complement(348472..348621) 1 NC_002937.3 hypothetical protein 348621 2794557 DVU0301 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009525.1 348472 R 882 CDS YP_009526.1 46578718 2794558 complement(348841..349308) 1 NC_002937.3 identified by similarity to GP:3493637; chemotaxis protein CheX 349308 2794558 DVU0302 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheX YP_009526.1 348841 R 882 CDS YP_009527.1 46578719 2794559 complement(349656..349973) 1 NC_002937.3 hypothetical protein 349973 2794559 DVU0303 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009527.1 349656 R 882 CDS YP_009528.1 46578720 2794560 complement(350004..350285) 1 NC_002937.3 hypothetical protein 350285 2794560 DVU0304 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009528.1 350004 R 882 CDS YP_009529.1 46578721 2794561 complement(350415..350609) 1 NC_002937.3 identified by similarity to SP:P10624; match to protein family HMM PF00037; ferredoxin II 350609 2794561 DVU0305 Desulfovibrio vulgaris str. Hildenborough ferredoxin II YP_009529.1 350415 R 882 CDS YP_009530.1 46578722 2794805 350703..351320 1 NC_002937.3 hypothetical protein 351320 2794805 DVU0306 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009530.1 350703 D 882 CDS YP_009531.1 46578723 2794806 351441..352937 1 NC_002937.3 identified by match to protein family HMM PF00460; flagella basal body rod domain-containing protein 352937 2794806 DVU0307 Desulfovibrio vulgaris str. Hildenborough flagella basal body rod domain-containing protein YP_009531.1 351441 D 882 CDS YP_009532.1 46578724 2794807 complement(353329..353763) 1 NC_002937.3 identified by similarity to OMNI:NTL01AT1594; hypothetical protein 353763 2794807 DVU0308 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009532.1 353329 R 882 CDS YP_009533.1 46578725 2794808 353856..354776 1 NC_002937.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 354776 2794808 DVU0309 Desulfovibrio vulgaris str. Hildenborough LysR family transcriptional regulator YP_009533.1 353856 D 882 CDS YP_009534.1 46578726 2794809 complement(354912..356225) 1 NC_002937.3 identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026; flagellum-specific ATP synthase FliI 356225 fliI 2794809 fliI Desulfovibrio vulgaris str. Hildenborough flagellum-specific ATP synthase FliI YP_009534.1 354912 R 882 CDS YP_009535.1 46578727 2796755 complement(356222..356974) 1 NC_002937.3 identified by similarity to SP:P31068; flagellar assembly protein FliH 356974 2796755 DVU0311 Desulfovibrio vulgaris str. Hildenborough flagellar assembly protein FliH YP_009535.1 356222 R 882 CDS YP_009536.1 46578728 2796756 complement(356961..357977) 1 NC_002937.3 identified by similarity to SP:P23448; match to protein family HMM PF01706; match to protein family HMM TIGR00207; flagellar motor switch protein FliG 357977 fliG 2796756 fliG Desulfovibrio vulgaris str. Hildenborough flagellar motor switch protein FliG YP_009536.1 356961 R 882 CDS YP_009537.1 46578729 2796757 complement(357946..359562) 1 NC_002937.3 identified by similarity to SP:P25798; match to protein family HMM PF01514; match to protein family HMM TIGR00206; flagellar M-ring protein FliF 359562 fliF 2796757 fliF Desulfovibrio vulgaris str. Hildenborough flagellar M-ring protein FliF YP_009537.1 357946 R 882 CDS YP_009538.1 46578730 2796758 complement(359614..359949) 1 NC_002937.3 identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205; flagellar basal body component FliE 359949 fliE 2796758 fliE Desulfovibrio vulgaris str. Hildenborough flagellar basal body component FliE YP_009538.1 359614 R 882 CDS YP_009539.1 46578731 2796759 complement(359964..360401) 1 NC_002937.3 identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; flagellar basal-body rod protein FlgC 360401 flgC 2796759 flgC Desulfovibrio vulgaris str. Hildenborough flagellar basal-body rod protein FlgC YP_009539.1 359964 R 882 CDS YP_009540.1 46578732 2794174 complement(360401..360811) 1 NC_002937.3 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 360811 flgB 2794174 flgB Desulfovibrio vulgaris str. Hildenborough flagellar basal body rod protein FlgB YP_009540.1 360401 R 882 CDS YP_009541.1 46578733 2794175 complement(361286..361423) 1 NC_002937.3 hypothetical protein 361423 2794175 DVU0317 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009541.1 361286 R 882 CDS YP_009542.1 46578734 2794176 361450..362013 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 362013 2794176 DVU0318 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009542.1 361450 D 882 CDS YP_009543.1 46578735 2794177 complement(362485..363510) 1 NC_002937.3 identified by similarity to GP:20560072; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 363510 2794177 DVU0319 Desulfovibrio vulgaris str. Hildenborough NAD-dependent epimerase/dehydratase YP_009543.1 362485 R 882 CDS YP_009544.1 46578736 2794443 complement(363642..363902) 1 NC_002937.3 identified by similarity to GP:295166; hypothetical protein 363902 2794443 DVU0320 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009544.1 363642 R 882 CDS YP_009545.1 46578737 2794444 364219..365007 1 NC_002937.3 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 365007 2794444 DVU0321 Desulfovibrio vulgaris str. Hildenborough pantothenate kinase YP_009545.1 364219 D 882 CDS YP_009546.1 46578738 2794445 365096..366409 1 NC_002937.3 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 366409 eno 2794445 eno Desulfovibrio vulgaris str. Hildenborough phosphopyruvate hydratase YP_009546.1 365096 D 882 CDS YP_009547.1 46578739 2794446 366622..367482 1 NC_002937.3 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 367482 folD 2794446 folD Desulfovibrio vulgaris str. Hildenborough bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_009547.1 366622 D 882 CDS YP_009548.1 46578740 2794326 367541..367639 1 NC_002937.3 hypothetical protein 367639 2794326 DVU0324 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009548.1 367541 D 882 CDS YP_009549.1 46578741 2794327 367932..369029 1 NC_002937.3 identified by similarity to SP:P24192; match to protein family HMM PF01924; hydrogenase expression/formation protein HypD 369029 hypD 2794327 hypD Desulfovibrio vulgaris str. Hildenborough hydrogenase expression/formation protein HypD YP_009549.1 367932 D 882 CDS YP_009550.1 46578742 2794328 369036..370061 1 NC_002937.3 identified by similarity to SP:P42034; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 370061 hypE 2794328 hypE Desulfovibrio vulgaris str. Hildenborough hydrogenase expression/formation protein HypE YP_009550.1 369036 D 882 CDS YP_009551.1 46578743 2794329 complement(370217..371482) 1 NC_002937.3 identified by match to protein family HMM PF02397; exopolysaccharide biosynthesis protein 371482 2794329 DVU0327 Desulfovibrio vulgaris str. Hildenborough exopolysaccharide biosynthesis protein YP_009551.1 370217 R 882 CDS YP_009552.1 46578744 2794330 complement(371560..372705) 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 372705 2794330 DVU0328 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_009552.1 371560 R 882 CDS YP_009553.1 46578745 2794331 372898..373017 1 NC_002937.3 hypothetical protein 373017 2794331 DVU0329 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009553.1 372898 D 882 CDS YP_009554.1 46578746 2794497 complement(372996..374234) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; response regulator 374234 2794497 DVU0330 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009554.1 372996 R 882 CDS YP_009555.1 46578747 2794498 complement(374234..377155) 1 NC_002937.3 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 377155 2794498 DVU0331 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009555.1 374234 R 882 CDS YP_009556.1 46578748 2794499 complement(377194..377352) 1 NC_002937.3 hypothetical protein 377352 2794499 DVU0332 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009556.1 377194 R 882 CDS YP_009557.1 46578749 2794500 377367..378023 1 NC_002937.3 hypothetical protein 378023 2794500 DVU0333 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009557.1 377367 D 882 CDS YP_009558.1 46578750 2794750 377980..378891 1 NC_002937.3 identified by similarity to SP:P07862; match to protein family HMM PF01820; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase 378891 2794750 DVU0334 Desulfovibrio vulgaris str. Hildenborough D-alanine--D-alanine ligase YP_009558.1 377980 D 882 CDS YP_009559.1 46578751 2794751 378977..380569 1 NC_002937.3 identified by similarity to GP:17221411; 3-deoxy-D-manno-octulosonic-acid transferase 380569 2794751 DVU0335 Desulfovibrio vulgaris str. Hildenborough 3-deoxy-D-manno-octulosonic-acid transferase YP_009559.1 378977 D 882 CDS YP_009560.1 46578752 2794752 complement(380770..382110) 1 NC_002937.3 identified by match to protein family HMM PF01041; aminotransferase 382110 2794752 DVU0336 Desulfovibrio vulgaris str. Hildenborough aminotransferase YP_009560.1 380770 R 882 CDS YP_009561.1 46578753 2794753 complement(382107..384077) 1 NC_002937.3 hypothetical protein 384077 2794753 DVU0337 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009561.1 382107 R 882 CDS YP_009562.1 46578754 2794754 complement(384097..384738) 1 NC_002937.3 identified by match to protein family HMM PF00702; HAD superfamily hydrolase 384738 2794754 DVU0338 Desulfovibrio vulgaris str. Hildenborough HAD superfamily hydrolase YP_009562.1 384097 R 882 CDS YP_009563.1 46578755 2796768 complement(384768..385673) 1 NC_002937.3 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 385673 2796768 DVU0339 Desulfovibrio vulgaris str. Hildenborough D-isomer specific 2-hydroxyacid dehydrogenase YP_009563.1 384768 R 882 CDS YP_009564.1 46578756 2796769 complement(385816..386409) 1 NC_002937.3 identified by similarity to SP:P26839; match to protein family HMM PF00132; acetyltransferase 386409 2796769 DVU0340 Desulfovibrio vulgaris str. Hildenborough acetyltransferase YP_009564.1 385816 R 882 CDS YP_009565.1 46578757 2796770 complement(386419..387189) 1 NC_002937.3 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 387189 2796770 DVU0341 Desulfovibrio vulgaris str. Hildenborough 3-deoxy-manno-octulosonate cytidylyltransferase YP_009565.1 386419 R 882 CDS YP_009566.1 46578758 2796771 complement(387502..388416) 1 NC_002937.3 identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 388416 2796771 DVU0342 Desulfovibrio vulgaris str. Hildenborough NAD-dependent epimerase/dehydratase YP_009566.1 387502 R 882 CDS YP_009567.1 46578759 2796772 complement(388419..389201) 1 NC_002937.3 identified by similarity to SP:P23522; match to protein family HMM PF03328; HPCH/HPAI aldolase 389201 2796772 DVU0343 Desulfovibrio vulgaris str. Hildenborough HPCH/HPAI aldolase YP_009567.1 388419 R 882 CDS YP_009568.1 46578760 2794784 complement(389669..391597) 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 391597 2794784 DVU0344 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009568.1 389669 R 882 CDS YP_009569.1 46578761 2794785 complement(391581..391781) 1 NC_002937.3 hypothetical protein 391781 2794785 DVU0345 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009569.1 391581 R 882 CDS YP_009570.1 46578762 2794786 complement(391830..393368) 1 NC_002937.3 hypothetical protein 393368 2794786 DVU0346 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009570.1 391830 R 882 CDS YP_009571.1 46578763 2794787 complement(393664..394335) 1 NC_002937.3 identified by match to protein family HMM PF00132; hexapaptide repeat-containing transferase 394335 2794787 DVU0347 Desulfovibrio vulgaris str. Hildenborough hexapaptide repeat-containing transferase YP_009571.1 393664 R 882 CDS YP_009572.1 46578764 2794788 complement(394354..396078) 1 NC_002937.3 hypothetical protein 396078 2794788 DVU0348 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009572.1 394354 R 882 CDS YP_009573.1 46578765 2794676 complement(396098..397156) 1 NC_002937.3 identified by match to protein family HMM PF01354; match to protein family HMM PF03102; NeuB family protein 397156 2794676 DVU0349 Desulfovibrio vulgaris str. Hildenborough NeuB family protein YP_009573.1 396098 R 882 CDS YP_009574.1 46578766 2794677 complement(397193..397876) 1 NC_002937.3 identified by match to protein family HMM PF02348; spore coat polysaccharide biosynthesis protein spsF 397876 spsF 2794677 spsF Desulfovibrio vulgaris str. Hildenborough spore coat polysaccharide biosynthesis protein spsF YP_009574.1 397193 R 882 CDS YP_009575.1 46578767 2794678 complement(397873..399507) 1 NC_002937.3 identified by similarity to SP:P39627; similarity to GP:4741793; cytidine 5'monophosphate N-acetylneuraminic acid synthetase /polysaccharide biosynthesis protein 399507 2794678 DVU0351 Desulfovibrio vulgaris str. Hildenborough cytidine 5'monophosphate N-acetylneuraminic acid synthetase /polysaccharide biosynthesis protein YP_009575.1 397873 R 882 CDS YP_009576.1 46578768 2794679 complement(399515..400696) 1 NC_002937.3 identified by match to protein family HMM PF01041; aminotransferase 400696 2794679 DVU0352 Desulfovibrio vulgaris str. Hildenborough aminotransferase YP_009576.1 399515 R 882 CDS YP_009577.1 46578769 2794680 complement(400830..401903) 1 NC_002937.3 identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 401903 2794680 DVU0353 Desulfovibrio vulgaris str. Hildenborough iron-containing alcohol dehydrogenase YP_009577.1 400830 R 882 CDS YP_009578.1 46578770 2794755 402346..403404 1 NC_002937.3 identified by similarity to OMNI:NTL01AT2375; hypothetical protein 403404 2794755 DVU0354 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009578.1 402346 D 882 CDS YP_009579.1 46578771 2794756 complement(403528..405351) 1 NC_002937.3 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 405351 2794756 DVU0355 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_009579.1 403528 R 882 CDS YP_009580.1 46578772 2794757 405472..406047 1 NC_002937.3 identified by similarity to SP:P05100; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I 406047 tag 2794757 tag Desulfovibrio vulgaris str. Hildenborough DNA-3-methyladenine glycosylase I YP_009580.1 405472 D 882 CDS YP_009581.1 46578773 2794758 406059..406976 1 NC_002937.3 identified by similarity to OMNI:NTL02ML5790; hypothetical protein 406976 2794758 DVU0357 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009581.1 406059 D 882 CDS YP_009582.1 46578774 2793497 407342..408085 1 NC_002937.3 hypothetical protein 408085 2793497 DVU0358 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009582.1 407342 D 882 CDS YP_009583.1 46578775 2793498 408368..408694 1 NC_002937.3 HesB-like domain-containing protein 408694 2793498 DVU0359 Desulfovibrio vulgaris str. Hildenborough HesB-like domain-containing protein YP_009583.1 408368 D 882 CDS YP_009584.1 46578776 2793499 409391..411082 1 NC_002937.3 catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit 411082 ilvB-1 2793499 ilvB-1 Desulfovibrio vulgaris str. Hildenborough acetolactate synthase catalytic subunit YP_009584.1 409391 D 882 CDS YP_009585.1 46578777 2793500 411087..411410 1 NC_002937.3 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 411410 2793500 DVU0361 Desulfovibrio vulgaris str. Hildenborough acetolactate synthase 1 regulatory subunit YP_009585.1 411087 D 882 CDS YP_009586.1 46578778 2793501 complement(411461..412240) 1 NC_002937.3 identified by similarity to OMNI:NTL01AA01111; hypothetical protein 412240 2793501 DVU0362 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009586.1 411461 R 882 CDS YP_009587.2 304569682 2793561 complement(412237..413337) 1 NC_002937.3 identified by match to protein family HMM PF00425; para-aminobenzoate synthase, component I 413337 pabB 2793561 pabB Desulfovibrio vulgaris str. Hildenborough para-aminobenzoate synthase, component I YP_009587.2 412237 R 882 CDS YP_009588.1 46578780 2793562 complement(413780..414334) 1 NC_002937.3 identified by similarity to SP:P28819; match to protein family HMM PF00117; para-aminobenzoate/anthranilate synthase glutamine amidotransferase 414334 pabA 2793562 pabA Desulfovibrio vulgaris str. Hildenborough para-aminobenzoate/anthranilate synthase glutamine amidotransferase YP_009588.1 413780 R 882 CDS YP_009589.1 46578781 2793563 complement(414331..415086) 1 NC_002937.3 identified by similarity to OMNI:NTL01RS1629; match to protein family HMM PF02578; hypothetical protein 415086 2793563 DVU0365 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009589.1 414331 R 882 CDS YP_009590.1 46578782 2793564 complement(415077..415928) 1 NC_002937.3 identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 415928 2793564 DVU0366 Desulfovibrio vulgaris str. Hildenborough 5-formyltetrahydrofolate cyclo-ligase YP_009590.1 415077 R 882 CDS YP_009591.1 46578783 2793565 416195..416929 1 NC_002937.3 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 416929 2793565 DVU0367 Desulfovibrio vulgaris str. Hildenborough Ser/Thr protein phosphatase YP_009591.1 416195 D 882 CDS YP_009592.1 46578784 2794440 417842..417946 1 NC_002937.3 hypothetical protein 417946 2794440 DVU0368 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009592.1 417842 D 882 CDS YP_009593.1 46578785 2794441 418078..418176 1 NC_002937.3 hypothetical protein 418176 2794441 DVU0369 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009593.1 418078 D 882 CDS YP_009594.1 46578786 2794442 complement(418268..418411) 1 NC_002937.3 hypothetical protein 418411 2794442 DVU0370 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009594.1 418268 R 882 CDS YP_009595.1 46578787 2796717 418412..419836 1 NC_002937.3 identified by similarity to GP:21899254; hypothetical protein 419836 2796717 DVU0371 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009595.1 418412 D 882 CDS YP_009596.1 46578788 2796718 complement(420136..420828) 1 NC_002937.3 hypothetical protein 420828 2796718 DVU0372 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009596.1 420136 R 882 CDS YP_009597.1 46578789 2796719 complement(420886..423198) 1 NC_002937.3 identified by similarity to OMNI:NTL01PA0352; match to protein family HMM PF02629; CoA-binding domain-containing protein 423198 2796719 DVU0373 Desulfovibrio vulgaris str. Hildenborough CoA-binding domain-containing protein YP_009597.1 420886 R 882 CDS YP_009598.1 46578790 2796720 complement(423403..425901) 1 NC_002937.3 identified by match to protein family HMM PF01558; pyruvate ferredoxin/flavodoxin oxidoreductase 425901 2796720 DVU0374 Desulfovibrio vulgaris str. Hildenborough pyruvate ferredoxin/flavodoxin oxidoreductase YP_009598.1 423403 R 882 CDS YP_009599.1 46578791 2796721 complement(425986..427215) 1 NC_002937.3 identified by match to protein family HMM PF00208; Glu/Leu/Phe/Val dehydrogenase 427215 2796721 DVU0375 Desulfovibrio vulgaris str. Hildenborough Glu/Leu/Phe/Val dehydrogenase YP_009599.1 425986 R 882 CDS YP_009600.1 46578792 2794634 complement(427237..427503) 1 NC_002937.3 hypothetical protein 427503 2794634 DVU0376 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009600.1 427237 R 882 CDS YP_009601.1 46578793 2794635 complement(427507..428424) 1 NC_002937.3 identified by similarity to SP:P50971; match to protein family HMM PF00070; thioredoxin reductase 428424 trxB-1 2794635 trxB-1 Desulfovibrio vulgaris str. Hildenborough thioredoxin reductase YP_009601.1 427507 R 882 CDS YP_009602.1 46578794 2794636 complement(428443..428757) 1 NC_002937.3 identified by similarity to SP:P80579; thioredoxin 428757 2794636 DVU0378 Desulfovibrio vulgaris str. Hildenborough thioredoxin YP_009602.1 428443 R 882 CDS YP_009603.1 46578795 2794637 complement(428780..429457) 1 NC_002937.3 identified by match to protein family HMM PF00027; transcriptional regulator 429457 2794637 DVU0379 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_009603.1 428780 R 882 CDS YP_009604.1 46578796 2794638 complement(429501..431063) 1 NC_002937.3 identified by match to protein family HMM PF00884; sulfatase 431063 2794638 DVU0380 Desulfovibrio vulgaris str. Hildenborough sulfatase YP_009604.1 429501 R 882 CDS YP_009605.1 46578797 2796739 complement(431111..432502) 1 NC_002937.3 identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 432502 nhaC-1 2796739 nhaC-1 Desulfovibrio vulgaris str. Hildenborough Na+/H+ antiporter NhaC YP_009605.1 431111 R 882 CDS YP_009606.1 46578798 2796740 432584..432883 1 NC_002937.3 hypothetical protein 432883 2796740 DVU0382 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009606.1 432584 D 882 CDS YP_009607.1 46578799 2796741 433064..433453 1 NC_002937.3 hypothetical protein 433453 2796741 DVU0383 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009607.1 433064 D 882 CDS YP_009608.1 46578800 2796742 complement(433812..434384) 1 NC_002937.3 identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613; flavoredoxin 434384 flr 2796742 flr Desulfovibrio vulgaris str. Hildenborough flavoredoxin YP_009608.1 433812 R 882 CDS YP_009609.1 46578801 2796743 434408..434530 1 NC_002937.3 hypothetical protein 434530 2796743 DVU0385 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009609.1 434408 D 882 CDS YP_009610.1 46578802 2796744 434628..435377 1 NC_002937.3 identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein 435377 2796744 DVU0386 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter periplasmic amino acid-binding protein YP_009610.1 434628 D 882 CDS YP_009611.1 46578803 2795061 435519..436196 1 NC_002937.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 436196 2795061 DVU0387 Desulfovibrio vulgaris str. Hildenborough His/Glu/Gln/Arg/opine ABC transporter permease YP_009611.1 435519 D 882 CDS YP_009612.1 46578804 2795062 436205..436972 1 NC_002937.3 identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 436972 2795062 DVU0388 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter ATP-binding protein YP_009612.1 436205 D 882 CDS YP_009613.1 46578805 2795063 436972..437646 1 NC_002937.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter permease 437646 2795063 DVU0389 Desulfovibrio vulgaris str. Hildenborough His/Glu/Gln/Arg/opine amino acid ABC transporter permease YP_009613.1 436972 D 882 CDS YP_009614.1 46578806 2795064 437672..439054 1 NC_002937.3 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 439054 2795064 DVU0390 Desulfovibrio vulgaris str. Hildenborough glycolate oxidase subunit GlcD YP_009614.1 437672 D 882 CDS YP_009615.1 46578807 2794247 complement(439115..440056) 1 NC_002937.3 hypothetical protein 440056 2794247 DVU0391 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009615.1 439115 R 882 CDS YP_009616.1 46578808 2794248 440311..441510 1 NC_002937.3 identified by similarity to GP:14278621; match to protein family HMM PF00155; aromatic aminotransferase 441510 2794248 DVU0392 Desulfovibrio vulgaris str. Hildenborough aromatic aminotransferase YP_009616.1 440311 D 882 CDS YP_009617.2 304569683 2794249 441512..442501 1 NC_002937.3 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 442501 ung 2794249 ung Desulfovibrio vulgaris str. Hildenborough uracil-DNA glycosylase YP_009617.2 441512 D 882 CDS YP_009618.1 46578810 2794250 complement(442741..443763) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 443763 2794250 DVU0394 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_009618.1 442741 R 882 CDS YP_009619.1 46578811 2794251 443991..444410 1 NC_002937.3 identified by similarity to SP:O07513; match to protein family HMM PF01230; HIT family protein 444410 2794251 DVU0395 Desulfovibrio vulgaris str. Hildenborough HIT family protein YP_009619.1 443991 D 882 CDS YP_009620.1 46578812 2796538 444438..444725 1 NC_002937.3 identified by similarity to SP:P05514; match to protein family HMM PF00216; DNA-binding protein HU 444725 hup-1 2796538 hup-1 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein HU YP_009620.1 444438 D 882 CDS YP_009621.1 46578813 2796539 complement(445073..445804) 1 NC_002937.3 identified by similarity to SP:P10100; match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A 445804 2796539 DVU0397 Desulfovibrio vulgaris str. Hildenborough rare lipoprotein A YP_009621.1 445073 R 882 CDS YP_009622.1 46578814 2796540 complement(445885..447711) 1 NC_002937.3 identified by match to protein family HMM PF00682; HMGL-like domain-containing protein 447711 2796540 DVU0398 Desulfovibrio vulgaris str. Hildenborough HMGL-like domain-containing protein YP_009622.1 445885 R 882 CDS YP_009623.1 46578815 2796541 complement(447708..448496) 1 NC_002937.3 hypothetical protein 448496 2796541 DVU0399 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009623.1 447708 R 882 CDS YP_009624.1 46578816 2796542 complement(448581..449132) 1 NC_002937.3 hypothetical protein 449132 2796542 DVU0400 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009624.1 448581 R 882 CDS YP_009625.1 46578817 2796543 complement(449150..449701) 1 NC_002937.3 hypothetical protein 449701 2796543 DVU0401 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009625.1 449150 R 882 CDS YP_009626.1 46578818 2796152 449888..451201 1 NC_002937.3 identified by similarity to GP:902747; match to protein family HMM PF01077; match to protein family HMM TIGR02064; dissimilatory sulfite reductase subunit alpha 451201 dsvA 2796152 dsvA Desulfovibrio vulgaris str. Hildenborough dissimilatory sulfite reductase subunit alpha YP_009626.1 449888 D 882 CDS YP_009627.1 46578819 2796153 451220..452365 1 NC_002937.3 identified by similarity to GP:902748; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02066; dissimilatory sulfite reductase subunit beta 452365 dvsB 2796153 dvsB Desulfovibrio vulgaris str. Hildenborough dissimilatory sulfite reductase subunit beta YP_009627.1 451220 D 882 CDS YP_009628.1 46578820 2796154 452427..452663 1 NC_002937.3 identified by similarity to SP:Q46582; dissimilatory sulfite reductase B 452663 2796154 DVU0404 Desulfovibrio vulgaris str. Hildenborough dissimilatory sulfite reductase B YP_009628.1 452427 D 882 CDS YP_009629.1 46578821 2796155 452779..454185 1 NC_002937.3 identified by similarity to SP:P29946; match to protein family HMM PF01656; match to protein family HMM TIGR00379; cobyrinic acid a,c-diamide synthase 454185 cobB-1 2796155 cobB-1 Desulfovibrio vulgaris str. Hildenborough cobyrinic acid a,c-diamide synthase YP_009629.1 452779 D 882 CDS YP_009630.1 46578822 2796156 complement(454663..455601) 1 NC_002937.3 identified by match to protein family HMM PF00892; hypothetical protein 455601 2796156 DVU0406 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009630.1 454663 R 882 CDS YP_009631.1 46578823 2793708 455770..456414 1 NC_002937.3 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A family protein 456414 2793708 DVU0407 Desulfovibrio vulgaris str. Hildenborough rare lipoprotein A family protein YP_009631.1 455770 D 882 CDS YP_009632.1 46578824 2793709 456505..458652 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; response regulator/sensory box/GGDEF domain/EAL domain-containing protein 458652 2793709 DVU0408 Desulfovibrio vulgaris str. Hildenborough response regulator/sensory box/GGDEF domain/EAL domain-containing protein YP_009632.1 456505 D 882 CDS YP_009633.1 46578825 2793710 complement(458875..459225) 1 NC_002937.3 hypothetical protein 459225 2793710 DVU0409 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009633.1 458875 R 882 CDS YP_009634.1 46578826 2793711 complement(459231..459836) 1 NC_002937.3 hypothetical protein 459836 2793711 DVU0410 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009634.1 459231 R 882 CDS YP_009635.1 46578827 2793712 complement(459998..461671) 1 NC_002937.3 identified by match to protein family HMM PF01075; heptosyltransferase 461671 2793712 DVU0411 Desulfovibrio vulgaris str. Hildenborough heptosyltransferase YP_009635.1 459998 R 882 CDS YP_009636.1 46578828 2795175 complement(461688..462353) 1 NC_002937.3 identified by similarity to GP:3288678; match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein TrkA 462353 2795175 DVU0412 Desulfovibrio vulgaris str. Hildenborough potassium uptake protein TrkA YP_009636.1 461688 R 882 CDS YP_009637.1 46578829 2795176 complement(462411..463748) 1 NC_002937.3 identified by similarity to GP:3395637; match to protein family HMM PF02386; TrkH family potassium uptake protein 463748 2795176 DVU0413 Desulfovibrio vulgaris str. Hildenborough TrkH family potassium uptake protein YP_009637.1 462411 R 882 CDS YP_009638.1 46578830 2795177 463867..465186 1 NC_002937.3 identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme-like protein 465186 2795177 DVU0414 Desulfovibrio vulgaris str. Hildenborough NADP-dependent malic enzyme-like protein YP_009638.1 463867 D 882 CDS YP_009639.1 46578831 2795178 465244..466767 1 NC_002937.3 identified by similarity to SP:P11648; match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 466767 pepA 2795178 pepA Desulfovibrio vulgaris str. Hildenborough cytosol aminopeptidase YP_009639.1 465244 D 882 CDS YP_009640.1 46578832 2795179 complement(467022..468140) 1 NC_002937.3 identified by similarity to GP:1119215; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 468140 2795179 DVU0416 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_009640.1 467022 R 882 CDS YP_009641.1 46578833 2796700 468657..470636 1 NC_002937.3 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 470636 speA 2796700 speA Desulfovibrio vulgaris str. Hildenborough arginine decarboxylase YP_009641.1 468657 D 882 CDS YP_009642.1 46578834 2796701 470885..472075 1 NC_002937.3 identified by match to protein family HMM PF03435; saccharopine dehydrogenase 472075 lys1 2796701 lys1 Desulfovibrio vulgaris str. Hildenborough saccharopine dehydrogenase YP_009642.1 470885 D 882 CDS YP_009643.1 46578835 2796702 472353..473525 1 NC_002937.3 identified by similarity to GP:498170; match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 473525 nspC 2796702 nspC Desulfovibrio vulgaris str. Hildenborough carboxynorspermidine decarboxylase YP_009643.1 472353 D 882 CDS YP_009644.1 46578836 2796703 473780..473956 1 NC_002937.3 hypothetical protein 473956 2796703 DVU0420 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009644.1 473780 D 882 CDS YP_009645.1 46578837 2796704 473967..474839 1 NC_002937.3 identified by similarity to OMNI:NTL01SS00132; match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 474839 2796704 DVU0421 Desulfovibrio vulgaris str. Hildenborough agmatinase YP_009645.1 473967 D 882 CDS YP_009646.1 46578838 2795215 complement(475147..478365) 1 NC_002937.3 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 478365 2795215 DVU0422 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_009646.1 475147 R 882 CDS YP_009647.1 46578839 2795216 478518..478943 1 NC_002937.3 identified by match to protein family HMM PF00582; universal stress protein 478943 2795216 DVU0423 Desulfovibrio vulgaris str. Hildenborough universal stress protein YP_009647.1 478518 D 882 CDS YP_009648.1 46578840 2795217 479096..480541 1 NC_002937.3 identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthetase 480541 cls 2795217 cls Desulfovibrio vulgaris str. Hildenborough cardiolipin synthetase YP_009648.1 479096 D 882 CDS YP_009649.1 46578841 2795218 480810..481616 1 NC_002937.3 hypothetical protein 481616 2795218 DVU0425 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009649.1 480810 D 882 CDS YP_009650.1 46578842 2795219 complement(481824..483176) 1 NC_002937.3 identified by similarity to SP:P14285; match to protein family HMM PF02417; chromate transport family protein 483176 2795219 DVU0426 Desulfovibrio vulgaris str. Hildenborough chromate transport family protein YP_009650.1 481824 R 882 CDS YP_009651.1 46578843 2795220 483204..483401 1 NC_002937.3 hypothetical protein 483401 2795220 DVU0427 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009651.1 483204 D 882 CDS YP_009652.1 46578844 2794671 483654..483974 1 NC_002937.3 identified by similarity to OMNI:NTL01SM02466; match to protein family HMM PF03992; hypothetical protein 483974 2794671 DVU0428 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009652.1 483654 D 882 CDS YP_009653.1 46578845 2794672 complement(484368..484769) 1 NC_002937.3 identified by similarity to GP:3005972; match to protein family HMM PF00037; ech hydrogenase subunit EchF 484769 2794672 DVU0429 Desulfovibrio vulgaris str. Hildenborough ech hydrogenase subunit EchF YP_009653.1 484368 R 882 CDS YP_009654.1 46578846 2794673 complement(484788..485864) 1 NC_002937.3 identified by similarity to GP:3005971; match to protein family HMM PF00346; ech hydrogenase subunit EchE 485864 2794673 DVU0430 Desulfovibrio vulgaris str. Hildenborough ech hydrogenase subunit EchE YP_009654.1 484788 R 882 CDS YP_009655.1 46578847 2794674 complement(485877..486269) 1 NC_002937.3 identified by similarity to GP:3005970; ech hydrogenase subunit EchD 486269 2794674 DVU0431 Desulfovibrio vulgaris str. Hildenborough ech hydrogenase subunit EchD YP_009655.1 485877 R 882 CDS YP_009656.1 46578848 2794675 complement(486305..486778) 1 NC_002937.3 identified by similarity to GP:3005969; ech hydrogenase subunit EchC 486778 2794675 DVU0432 Desulfovibrio vulgaris str. Hildenborough ech hydrogenase subunit EchC YP_009656.1 486305 R 882 CDS YP_009657.1 46578849 2794928 complement(486791..487639) 1 NC_002937.3 identified by similarity to GP:3005968; match to protein family HMM PF00146; ech hydrogenase subunit EchB 487639 2794928 DVU0433 Desulfovibrio vulgaris str. Hildenborough ech hydrogenase subunit EchB YP_009657.1 486791 R 882 CDS YP_009658.1 46578850 2794929 complement(487639..489585) 1 NC_002937.3 identified by similarity to GP:3005967; match to protein family HMM PF00361; ech hydrogenase subunit EchA 489585 2794929 DVU0434 Desulfovibrio vulgaris str. Hildenborough ech hydrogenase subunit EchA YP_009658.1 487639 R 882 CDS YP_009659.1 46578851 2794930 complement(489742..489840) 1 NC_002937.3 hypothetical protein 489840 2794930 DVU0435 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009659.1 489742 R 882 CDS YP_009660.1 46578852 2794931 489845..490600 1 NC_002937.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 490600 2794931 DVU0436 Desulfovibrio vulgaris str. Hildenborough TetR family transcriptional regulator YP_009660.1 489845 D 882 CDS YP_009661.1 46578853 2794932 490755..492215 1 NC_002937.3 identified by similarity to SP:P76397; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 492215 2794932 DVU0437 Desulfovibrio vulgaris str. Hildenborough RND family efflux transporter MFP subunit YP_009661.1 490755 D 882 CDS YP_009662.1 46578854 2794933 492212..495337 1 NC_002937.3 identified by similarity to GP:14025566; match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 495337 2794933 DVU0438 Desulfovibrio vulgaris str. Hildenborough AcrB/AcrD/AcrF family protein YP_009662.1 492212 D 882 CDS YP_009663.1 46578855 2794934 495372..495662 1 NC_002937.3 identified by match to protein family HMM PF03795; YCII-related domain-containing protein 495662 2794934 DVU0439 Desulfovibrio vulgaris str. Hildenborough YCII-related domain-containing protein YP_009663.1 495372 D 882 CDS YP_009664.1 46578856 2796509 496131..497462 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0248; hypothetical protein 497462 2796509 DVU0440 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009664.1 496131 D 882 CDS YP_009665.1 46578857 2796510 complement(497613..499340) 1 NC_002937.3 identified by similarity to SP:P39761; match to protein family HMM PF01979; match to protein family HMM TIGR01178; adenine deaminase 499340 ade 2796510 ade Desulfovibrio vulgaris str. Hildenborough adenine deaminase YP_009665.1 497613 R 882 CDS YP_009666.1 46578858 2796511 complement(499787..500983) 1 NC_002937.3 identified by match to protein family HMM PF02562; phoH-like protein 500983 2796511 DVU0442 Desulfovibrio vulgaris str. Hildenborough phoH-like protein YP_009666.1 499787 R 882 CDS YP_009667.1 46578859 2796512 complement(501196..501930) 1 NC_002937.3 identified by match to protein family HMM PF00929; exonulcease 501930 2796512 DVU0443 Desulfovibrio vulgaris str. Hildenborough exonulcease YP_009667.1 501196 R 882 CDS YP_009668.1 46578860 2796513 complement(501938..504160) 1 NC_002937.3 identified by match to protein family HMM PF00571; hypothetical protein 504160 2796513 DVU0444 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009668.1 501938 R 882 CDS YP_009669.1 46578861 2796648 complement(504169..505893) 1 NC_002937.3 identified by match to protein family HMM PF00571; hypothetical protein 505893 2796648 DVU0445 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009669.1 504169 R 882 CDS YP_009670.1 46578862 2796649 complement(506042..507589) 1 NC_002937.3 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium/solute symporter family protein 507589 2796649 DVU0446 Desulfovibrio vulgaris str. Hildenborough sodium/solute symporter family protein YP_009670.1 506042 R 882 CDS YP_009671.1 46578863 2796650 complement(507582..507899) 1 NC_002937.3 identified by similarity to SP:P32706; match to protein family HMM PF04341; hypothetical protein 507899 2796650 DVU0447 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009671.1 507582 R 882 CDS YP_009672.1 46578864 2796651 508293..509438 1 NC_002937.3 identified by similarity to SP:P32054; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 509438 gmd 2796651 gmd Desulfovibrio vulgaris str. Hildenborough GDP-mannose 4,6-dehydratase YP_009672.1 508293 D 882 CDS YP_009673.1 46578865 2796652 complement(509426..513967) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229; sensor/response regulator 513967 2796652 DVU0449 Desulfovibrio vulgaris str. Hildenborough sensor/response regulator YP_009673.1 509426 R 882 CDS YP_009674.1 46578866 2793373 514816..515760 1 NC_002937.3 identified by similarity to SP:P08391; match to protein family HMM PF01687; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 515760 ribF 2793373 ribF Desulfovibrio vulgaris str. Hildenborough riboflavin biosynthesis protein RibF YP_009674.1 514816 D 882 CDS YP_009675.1 46578867 2793374 515765..517576 1 NC_002937.3 identified by match to protein family HMM PF00571; match to protein family HMM PF00654; chloride channel family protein 517576 2793374 DVU0451 Desulfovibrio vulgaris str. Hildenborough chloride channel family protein YP_009675.1 515765 D 882 CDS YP_009676.1 46578868 2793375 complement(517716..519395) 1 NC_002937.3 hypothetical protein 519395 2793375 DVU0452 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009676.1 517716 R 882 CDS YP_009677.2 304569684 2793376 519369..522752 1 NC_002937.3 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 522752 2793376 DVU0453 Desulfovibrio vulgaris str. Hildenborough ATP-dependent DNA helicase UvrD YP_009677.2 519369 D 882 CDS YP_009678.1 46578870 2794974 complement(522863..523111) 1 NC_002937.3 hypothetical protein 523111 2794974 DVU0454 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009678.1 522863 R 882 CDS YP_009679.1 46578871 2794975 523161..523928 1 NC_002937.3 hypothetical protein 523928 2794975 DVU0455 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009679.1 523161 D 882 CDS YP_009680.1 46578872 2794976 523950..524957 1 NC_002937.3 DHH family protein 524957 2794976 DVU0456 Desulfovibrio vulgaris str. Hildenborough DHH family protein YP_009680.1 523950 D 882 CDS YP_009681.1 46578873 2794977 complement(525113..526363) 1 NC_002937.3 identified by match to protein family HMM PF00563; EAL domain-containing protein 526363 2794977 DVU0457 Desulfovibrio vulgaris str. Hildenborough EAL domain-containing protein YP_009681.1 525113 R 882 CDS YP_009682.1 46578874 2794978 complement(527146..527313) 1 NC_002937.3 hypothetical protein 527313 2794978 DVU0458 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009682.1 527146 R 882 CDS YP_009683.1 46578875 2794979 527355..527456 1 NC_002937.3 hypothetical protein 527456 2794979 DVU0459 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009683.1 527355 D 882 CDS YP_009684.1 46578876 2794473 527671..528471 1 NC_002937.3 catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase 528471 2794473 DVU0460 Desulfovibrio vulgaris str. Hildenborough fructose-bisphosphate aldolase YP_009684.1 527671 D 882 CDS YP_009685.1 46578877 2794474 528480..529451 1 NC_002937.3 catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase 529451 2794474 DVU0461 Desulfovibrio vulgaris str. Hildenborough 3-dehydroquinate synthase YP_009685.1 528480 D 882 CDS YP_009686.1 46578878 2794475 529454..530629 1 NC_002937.3 identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 530629 2794475 DVU0462 Desulfovibrio vulgaris str. Hildenborough chorismate mutase/prephenate dehydratase YP_009686.1 529454 D 882 CDS YP_009687.1 46578879 2794476 530629..531948 1 NC_002937.3 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356; 3-phosphoshikimate 1-carboxyvinyltransferase 531948 aroA 2794476 aroA Desulfovibrio vulgaris str. Hildenborough 3-phosphoshikimate 1-carboxyvinyltransferase YP_009687.1 530629 D 882 CDS YP_009688.1 46578880 2794477 531954..532721 1 NC_002937.3 identified by match to protein family HMM PF02153; prephenate dehydrogenase 532721 2794477 DVU0464 Desulfovibrio vulgaris str. Hildenborough prephenate dehydrogenase YP_009688.1 531954 D 882 CDS YP_009689.1 46578881 2794478 532853..534451 1 NC_002937.3 identified by similarity to SP:O66849; match to protein family HMM PF00425; match to protein family HMM PF04715; anthranilate synthase, component I 534451 2794478 DVU0465 Desulfovibrio vulgaris str. Hildenborough anthranilate synthase, component I YP_009689.1 532853 D 882 CDS YP_009690.1 46578882 2793607 534432..535061 1 NC_002937.3 identified by similarity to SP:Q08654; match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase, glutamine amidotransferase component 535061 trpG 2793607 trpG Desulfovibrio vulgaris str. Hildenborough anthranilate synthase, glutamine amidotransferase component YP_009690.1 534432 D 882 CDS YP_009691.1 46578883 2793608 535058..536056 1 NC_002937.3 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245; anthranilate phosphoribosyltransferase 536056 trpD 2793608 trpD Desulfovibrio vulgaris str. Hildenborough anthranilate phosphoribosyltransferase YP_009691.1 535058 D 882 CDS YP_009692.1 46578884 2793609 536049..536822 1 NC_002937.3 identified by match to protein family HMM PF00218; indole-3-glycerol phosphate synthase 536822 trpC 2793609 trpC Desulfovibrio vulgaris str. Hildenborough indole-3-glycerol phosphate synthase YP_009692.1 536049 D 882 CDS YP_009693.1 46578885 2793610 536870..537724 1 NC_002937.3 identified by match to protein family HMM PF00697; N-(5'-phosphoribosyl)anthranilate isomerase 537724 trpF-1 2793610 trpF-1 Desulfovibrio vulgaris str. Hildenborough N-(5'-phosphoribosyl)anthranilate isomerase YP_009693.1 536870 D 882 CDS YP_009694.1 46578886 2793611 537721..538908 1 NC_002937.3 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 538908 trpB-2 2793611 trpB-2 Desulfovibrio vulgaris str. Hildenborough tryptophan synthase subunit beta YP_009694.1 537721 D 882 CDS YP_009695.1 46578887 2794713 538905..539678 1 NC_002937.3 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 539678 trpA 2794713 trpA Desulfovibrio vulgaris str. Hildenborough tryptophan synthase subunit alpha YP_009695.1 538905 D 882 CDS YP_009696.1 46578888 2794714 complement(539866..540267) 1 NC_002937.3 hypothetical protein 540267 2794714 DVU0472 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009696.1 539866 R 882 CDS YP_009697.1 46578889 2794715 complement(540281..540409) 1 NC_002937.3 hypothetical protein 540409 2794715 DVU0473 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009697.1 540281 R 882 CDS YP_009698.1 46578890 2794716 complement(540442..541491) 1 NC_002937.3 identified by similarity to OMNI:SO3543; match to protein family HMM PF00665; ISDvu4, transposase 541491 2794716 DVU0474 Desulfovibrio vulgaris str. Hildenborough ISDvu4, transposase YP_009698.1 540442 R 882 CDS YP_009699.1 46578891 2794717 complement(541597..542037) 1 NC_002937.3 membrane protein , truncation 542037 2794717 DVU0475 Desulfovibrio vulgaris str. Hildenborough membrane protein , truncation YP_009699.1 541597 R 882 CDS YP_009700.1 46578892 2794718 542019..542234 1 NC_002937.3 hypothetical protein 542234 2794718 DVU0476 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009700.1 542019 D 882 CDS YP_009701.1 46578893 2793622 542367..543509 1 NC_002937.3 identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183; isocitrate dehydrogenase 543509 icd 2793622 icd Desulfovibrio vulgaris str. Hildenborough isocitrate dehydrogenase YP_009701.1 542367 D 882 CDS YP_009702.1 46578894 2793623 543608..544471 1 NC_002937.3 identified by match to protein family HMM PF00149; serine/threonine protein phosphatase 544471 2793623 DVU0478 Desulfovibrio vulgaris str. Hildenborough serine/threonine protein phosphatase YP_009702.1 543608 D 882 CDS YP_009703.1 46578895 2793624 544595..546094 1 NC_002937.3 identified by similarity to SP:P54736; match to protein family HMM PF00069; serine/threonine protein kinase 546094 2793624 DVU0479 Desulfovibrio vulgaris str. Hildenborough serine/threonine protein kinase YP_009703.1 544595 D 882 CDS YP_009704.1 46578896 2793625 546147..546878 1 NC_002937.3 hypothetical protein 546878 2793625 DVU0480 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009704.1 546147 D 882 CDS YP_009705.1 46578897 2793626 547103..548074 1 NC_002937.3 identified by similarity to SP:P17963; match to protein family HMM PF01370; ADP-L-glycero-D-manno-heptose-6-epimerase 548074 rfaD 2793626 rfaD Desulfovibrio vulgaris str. Hildenborough ADP-L-glycero-D-manno-heptose-6-epimerase YP_009705.1 547103 D 882 CDS YP_009706.1 46578898 2793627 complement(548195..549643) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 549643 2793627 DVU0482 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_009706.1 548195 R 882 CDS YP_009707.1 46578899 2796550 complement(549943..552177) 1 NC_002937.3 identified by similarity to SP:P23367; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585; DNA mismatch repair protein MutL 552177 2796550 DVU0483 Desulfovibrio vulgaris str. Hildenborough DNA mismatch repair protein MutL YP_009707.1 549943 R 882 CDS YP_009708.1 46578900 2796551 552380..553174 1 NC_002937.3 identified by similarity to SP:P38046; match to protein family HMM PF00005; ABC transporter ATP-binding protein 553174 2796551 DVU0484 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_009708.1 552380 D 882 CDS YP_009709.1 46578901 2796552 553171..553956 1 NC_002937.3 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 553956 2796552 DVU0485 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009709.1 553171 D 882 CDS YP_009710.1 46578902 2796553 554000..554329 1 NC_002937.3 hypothetical protein 554329 2796553 DVU0486 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009710.1 554000 D 882 CDS YP_009711.1 46578903 2796554 complement(554629..555129) 1 NC_002937.3 identified by similarity to SP:P12044; match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 555129 purE 2796554 purE Desulfovibrio vulgaris str. Hildenborough phosphoribosylaminoimidazole carboxylase catalytic subunit YP_009711.1 554629 R 882 CDS YP_009712.1 46578904 2796555 complement(555143..556417) 1 NC_002937.3 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 556417 purD 2796555 purD Desulfovibrio vulgaris str. Hildenborough phosphoribosylamine--glycine ligase YP_009712.1 555143 R 882 CDS YP_009713.1 46578905 2793703 556585..557883 1 NC_002937.3 identified by similarity to SP:P76085; match to protein family HMM PF00501; phenylacetate-coenzyme A ligase 557883 paaK-1 2793703 paaK-1 Desulfovibrio vulgaris str. Hildenborough phenylacetate-coenzyme A ligase YP_009713.1 556585 D 882 CDS YP_009714.1 46578906 2793705 559822..561027 1 NC_002937.3 identified by similarity to OMNI:NTL01RS2515; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 561027 2793705 DVU0491 Desulfovibrio vulgaris str. Hildenborough HDIG domain-containing protein YP_009714.1 559822 D 882 CDS YP_009715.1 46578907 2793706 complement(561263..562327) 1 NC_002937.3 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 562327 argC 2793706 argC Desulfovibrio vulgaris str. Hildenborough N-acetyl-gamma-glutamyl-phosphate reductase YP_009715.1 561263 R 882 CDS YP_009716.1 46578908 2793707 complement(562337..562645) 1 NC_002937.3 hypothetical protein 562645 2793707 DVU0493 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009716.1 562337 R 882 CDS YP_009717.1 46578909 2794722 complement(562711..563880) 1 NC_002937.3 identified by match to protein family HMM PF00266; class V aminotransferase 563880 2794722 DVU0494 Desulfovibrio vulgaris str. Hildenborough class V aminotransferase YP_009717.1 562711 R 882 CDS YP_009718.1 46578910 2794723 complement(563891..565087) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA00355; hypothetical protein 565087 2794723 DVU0495 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009718.1 563891 R 882 CDS YP_009719.1 46578911 2794724 complement(565280..568327) 1 NC_002937.3 identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 568327 polA 2794724 polA Desulfovibrio vulgaris str. Hildenborough DNA polymerase I YP_009719.1 565280 R 882 CDS YP_009720.1 46578912 2794725 complement(568434..568682) 1 NC_002937.3 hypothetical protein 568682 2794725 DVU0497 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009720.1 568434 R 882 CDS YP_009721.1 46578913 2794726 complement(568761..570266) 1 NC_002937.3 identified by similarity to OMNI:AF1263; match to protein family HMM PF00037; iron-sulfur cluster-binding protein 570266 2794726 DVU0498 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_009721.1 568761 R 882 CDS YP_009722.1 46578914 2794727 complement(570496..570891) 1 NC_002937.3 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 570891 2794727 DVU0499 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009722.1 570496 R 882 CDS YP_009723.1 46578915 2796760 571241..573169 1 NC_002937.3 identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 573169 selB 2796760 selB Desulfovibrio vulgaris str. Hildenborough selenocysteine-specific translation elongation factor YP_009723.1 571241 D 882 CDS YP_009724.1 46578916 2796761 complement(573514..574335) 1 NC_002937.3 identified by similarity to OMNI:NT01MC0824; hypothetical protein 574335 2796761 DVU0501 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009724.1 573514 R 882 CDS YP_009725.1 46578917 2796762 complement(574371..574814) 1 NC_002937.3 hypothetical protein 574814 2796762 DVU0502 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009725.1 574371 R 882 CDS YP_009726.1 46578918 2796763 complement(574964..577246) 1 NC_002937.3 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 577246 pnp 2796763 pnp Desulfovibrio vulgaris str. Hildenborough polynucleotide phosphorylase/polyadenylase YP_009726.1 574964 R 882 CDS YP_009727.1 46578919 2796764 complement(577418..577687) 1 NC_002937.3 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 577687 rpsO 2796764 rpsO Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S15 YP_009727.1 577418 R 882 CDS YP_009728.1 46578920 2796765 complement(577712..578626) 1 NC_002937.3 identified by similarity to SP:P09171; match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 578626 truB 2796765 truB Desulfovibrio vulgaris str. Hildenborough tRNA pseudouridine synthase B YP_009728.1 577712 R 882 CDS YP_009729.1 46578921 2793566 complement(578631..579632) 1 NC_002937.3 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein 579632 2793566 DVU0506 Desulfovibrio vulgaris str. Hildenborough DHH family protein YP_009729.1 578631 R 882 CDS YP_009730.1 46578922 2793567 complement(579650..579940) 1 NC_002937.3 identified by similarity to OMNI:NTL01BH2415; match to protein family HMM PF04456; hypothetical protein 579940 2793567 DVU0507 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009730.1 579650 R 882 CDS YP_009731.1 46578923 2793568 complement(580044..583283) 1 NC_002937.3 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 583283 infB 2793568 infB Desulfovibrio vulgaris str. Hildenborough translation initiation factor IF-2 YP_009731.1 580044 R 882 CDS YP_009732.1 46578924 2793569 complement(583287..583517) 1 NC_002937.3 identified by similarity to GP:642365; hypothetical protein 583517 2793569 DVU0509 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009732.1 583287 R 882 CDS YP_009733.1 46578925 2793570 complement(583521..584807) 1 NC_002937.3 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 584807 nusA 2793570 nusA Desulfovibrio vulgaris str. Hildenborough transcription elongation factor NusA YP_009733.1 583521 R 882 CDS YP_009734.1 46578926 2794303 complement(584848..585366) 1 NC_002937.3 identified by similarity to OMNI:SO1202; match to protein family HMM PF02576; hypothetical protein 585366 2794303 DVU0511 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009734.1 584848 R 882 CDS YP_009735.1 46578927 2794304 585708..586490 1 NC_002937.3 identified by similarity to SP:P75939; match to protein family HMM PF00460; flagellar basal-body rod protein 586490 2794304 DVU0512 Desulfovibrio vulgaris str. Hildenborough flagellar basal-body rod protein YP_009735.1 585708 D 882 CDS YP_009736.1 46578928 2794305 586547..587329 1 NC_002937.3 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 587329 flgG 2794305 flgG Desulfovibrio vulgaris str. Hildenborough flagellar basal body rod protein FlgG YP_009736.1 586547 D 882 CDS YP_009737.1 46578929 2794306 587379..588311 1 NC_002937.3 identified by match to protein family HMM PF03240; FlgA family protein 588311 2794306 DVU0514 Desulfovibrio vulgaris str. Hildenborough FlgA family protein YP_009737.1 587379 D 882 CDS YP_009738.1 46578930 2794307 588330..589046 1 NC_002937.3 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 589046 flgH 2794307 flgH Desulfovibrio vulgaris str. Hildenborough flagellar basal body L-ring protein YP_009738.1 588330 D 882 CDS YP_009739.1 46578931 2794308 589056..590192 1 NC_002937.3 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 590192 flgI 2794308 flgI Desulfovibrio vulgaris str. Hildenborough flagellar basal body P-ring protein YP_009739.1 589056 D 882 CDS YP_009740.1 46578932 2794799 590194..592026 1 NC_002937.3 identified by similarity to SP:P75942; match to protein family HMM PF01551; M24/M37 family peptidase 592026 2794799 DVU0517 Desulfovibrio vulgaris str. Hildenborough M24/M37 family peptidase YP_009740.1 590194 D 882 CDS YP_009741.1 46578933 2794800 592050..592514 1 NC_002937.3 hypothetical protein 592514 2794800 DVU0518 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009741.1 592050 D 882 CDS YP_009742.1 46578934 2794801 592514..594610 1 NC_002937.3 identified by similarity to SP:P33235; match to protein family HMM PF00460; flagellar hook-associated protein FlgK 594610 2794801 DVU0519 Desulfovibrio vulgaris str. Hildenborough flagellar hook-associated protein FlgK YP_009742.1 592514 D 882 CDS YP_009743.1 46578935 2794802 594622..596193 1 NC_002937.3 identified by match to protein family HMM PF00669; match to protein family HMM PF02012; flagellar hook-associated protein FlgL 596193 2794802 DVU0520 Desulfovibrio vulgaris str. Hildenborough flagellar hook-associated protein FlgL YP_009743.1 594622 D 882 CDS YP_009744.1 46578936 2794803 596207..596443 1 NC_002937.3 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 596443 csrA 2794803 csrA Desulfovibrio vulgaris str. Hildenborough carbon storage regulator YP_009744.1 596207 D 882 CDS YP_009745.1 46578937 2794804 596422..596943 1 NC_002937.3 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 596943 2794804 DVU0522 Desulfovibrio vulgaris str. Hildenborough flagellar assembly protein FliW YP_009745.1 596422 D 882 CDS YP_009746.1 46578938 2794889 complement(597294..597608) 1 NC_002937.3 identified by similarity to SP:P39809; match to protein family HMM PF04316; negative regulator of flagellin synthesis FlgM 597608 flgM 2794889 flgM Desulfovibrio vulgaris str. Hildenborough negative regulator of flagellin synthesis FlgM YP_009746.1 597294 R 882 CDS YP_009747.1 46578939 2794890 complement(597634..598050) 1 NC_002937.3 hypothetical protein 598050 2794890 DVU0524 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009747.1 597634 R 882 CDS YP_009748.1 46578940 2794891 598268..598936 1 NC_002937.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 598936 2794891 DVU0525 Desulfovibrio vulgaris str. Hildenborough MarR family transcriptional regulator YP_009748.1 598268 D 882 CDS YP_009749.1 46578941 2794892 598929..600332 1 NC_002937.3 identified by similarity to OMNI:NTL02MA1611; drug resistance transporter 600332 2794892 DVU0526 Desulfovibrio vulgaris str. Hildenborough drug resistance transporter YP_009749.1 598929 D 882 CDS YP_009750.1 46578942 2794893 600433..601065 1 NC_002937.3 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 601065 maF 2794893 maF Desulfovibrio vulgaris str. Hildenborough Maf-like protein YP_009750.1 600433 D 882 CDS YP_009751.1 46578943 2794894 601058..601537 1 NC_002937.3 identified by similarity to SP:P18200; match to protein family HMM PF04608; phosphatidylglycerophosphatase 601537 2794894 DVU0528 Desulfovibrio vulgaris str. Hildenborough phosphatidylglycerophosphatase YP_009751.1 601058 D 882 CDS YP_009752.1 46578944 2796178 complement(601638..602090) 1 NC_002937.3 identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family transcriptional regulator 602090 2796178 DVU0529 Desulfovibrio vulgaris str. Hildenborough Rrf2 family transcriptional regulator YP_009752.1 601638 R 882 CDS YP_009753.1 46578945 2796179 complement(602094..602510) 1 NC_002937.3 identified by similarity to SP:P33394; match to protein family HMM PF00072; response regulator, rrf1 protein 602510 2796179 DVU0530 Desulfovibrio vulgaris str. Hildenborough response regulator, rrf1 protein YP_009753.1 602094 R 882 CDS YP_009754.1 46578946 2796180 complement(602603..603988) 1 NC_002937.3 identified by similarity to SP:P33393; match to protein family HMM PF02754; hmc operon protein 6 603988 2796180 DVU0531 Desulfovibrio vulgaris str. Hildenborough hmc operon protein 6 YP_009754.1 602603 R 882 CDS YP_009755.1 46578947 2796181 complement(604012..604692) 1 NC_002937.3 identified by similarity to SP:P33392; hmc operon protein 5 604692 2796181 DVU0532 Desulfovibrio vulgaris str. Hildenborough hmc operon protein 5 YP_009755.1 604012 R 882 CDS YP_009756.1 46578948 2796182 complement(604714..604857) 1 NC_002937.3 identified by similarity to SP:P33391; hmc operon protein 4 604857 2796182 DVU0533 Desulfovibrio vulgaris str. Hildenborough hmc operon protein 4 YP_009756.1 604714 R 882 CDS YP_009757.1 46578949 2796183 complement(604873..606039) 1 NC_002937.3 identified by similarity to SP:P33390; match to protein family HMM PF03916; hmc operon protein 3 606039 2796183 DVU0534 Desulfovibrio vulgaris str. Hildenborough hmc operon protein 3 YP_009757.1 604873 R 882 CDS YP_009758.1 46578950 2796184 complement(606040..607152) 1 NC_002937.3 identified by similarity to SP:P33389; match to protein family HMM PF00037; match to protein family HMM TIGR01409; hmc operon protein 2 607152 2796184 DVU0535 Desulfovibrio vulgaris str. Hildenborough hmc operon protein 2 YP_009758.1 606040 R 882 CDS YP_009759.1 46578951 2795573 complement(607171..608853) 1 NC_002937.3 identified by similarity to SP:P24092; match to protein family HMM PF02085; high-molecular-weight cytochrome C 608853 hmcA 2795573 hmcA Desulfovibrio vulgaris str. Hildenborough high-molecular-weight cytochrome C YP_009759.1 607171 R 882 CDS YP_009760.1 46578952 2795574 complement(609020..609205) 1 NC_002937.3 hypothetical protein 609205 2795574 DVU0537 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009760.1 609020 R 882 CDS YP_009761.1 46578953 2795575 609243..610031 1 NC_002937.3 identified by match to protein family HMM PF01261; AP endonuclease 610031 2795575 DVU0538 Desulfovibrio vulgaris str. Hildenborough AP endonuclease YP_009761.1 609243 D 882 CDS YP_009762.1 46578954 2795576 complement(610049..611452) 1 NC_002937.3 identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 611452 2795576 DVU0539 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent DNA-binding response regulator YP_009762.1 610049 R 882 CDS YP_009763.1 46578955 2795577 complement(611436..613847) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 613847 2795577 DVU0540 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_009763.1 611436 R 882 CDS YP_009764.1 46578956 2795578 614023..614148 1 NC_002937.3 lipoprotein 614148 2795578 DVU0541 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009764.1 614023 D 882 CDS YP_009765.1 46578957 2794532 614145..614567 1 NC_002937.3 identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582; universal stress protein 614567 2794532 DVU0542 Desulfovibrio vulgaris str. Hildenborough universal stress protein YP_009765.1 614145 D 882 CDS YP_009766.1 46578958 2794533 614589..615698 1 NC_002937.3 hypothetical protein 615698 2794533 DVU0543 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009766.1 614589 D 882 CDS YP_009767.1 46578959 2794534 615721..616122 1 NC_002937.3 hypothetical protein 616122 2794534 DVU0544 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009767.1 615721 D 882 CDS YP_009768.1 46578960 2794535 616122..616547 1 NC_002937.3 identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582; hypothetical protein 616547 2794535 DVU0545 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009768.1 616122 D 882 CDS YP_009769.1 46578961 2794536 complement(616827..617003) 1 NC_002937.3 hypothetical protein 617003 2794536 DVU0546 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009769.1 616827 R 882 CDS YP_009770.1 46578962 2794537 616996..618114 1 NC_002937.3 identified by match to protein family HMM PF01094; high-affinity branched chain amino acid ABC transporter periplasmic branched chain amino acid-binding protein 618114 2794537 DVU0547 Desulfovibrio vulgaris str. Hildenborough high-affinity branched chain amino acid ABC transporter periplasmic branched chain amino acid-binding protein YP_009770.1 616996 D 882 CDS YP_009771.1 46578963 2794431 618218..619126 1 NC_002937.3 identified by similarity to SP:P08340; match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC transporter permease 619126 2794431 DVU0548 Desulfovibrio vulgaris str. Hildenborough high-affinity branched-chain amino acid ABC transporter permease YP_009771.1 618218 D 882 CDS YP_009772.1 46578964 2794432 619154..620377 1 NC_002937.3 identified by similarity to SP:P21628; match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC transporter permease 620377 2794432 DVU0549 Desulfovibrio vulgaris str. Hildenborough high-affinity branched-chain amino acid ABC transporter permease YP_009772.1 619154 D 882 CDS YP_009773.1 46578965 2794433 620377..621165 1 NC_002937.3 identified by similarity to SP:P22730; match to protein family HMM PF00005; high-affinity branched-chain amino acid ABC transporter ATP binding protein 621165 2794433 DVU0550 Desulfovibrio vulgaris str. Hildenborough high-affinity branched-chain amino acid ABC transporter ATP binding protein YP_009773.1 620377 D 882 CDS YP_009774.1 46578966 2794434 621158..621862 1 NC_002937.3 identified by similarity to SP:P22731; match to protein family HMM PF00005; high-affinity branched-chain amino acid ABC transporter ATP-binding protein 621862 2794434 DVU0551 Desulfovibrio vulgaris str. Hildenborough high-affinity branched-chain amino acid ABC transporter ATP-binding protein YP_009774.1 621158 D 882 CDS YP_009775.1 46578967 2794435 622064..623029 1 NC_002937.3 identified by similarity to GP:14250952; match to protein family HMM PF00535; hypothetical protein 623029 2794435 DVU0552 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009775.1 622064 D 882 CDS YP_009776.1 46578968 2794436 complement(623122..623373) 1 NC_002937.3 hypothetical protein 623373 2794436 DVU0553 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009776.1 623122 R 882 CDS YP_009777.1 46578969 2794437 623355..624293 1 NC_002937.3 identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 624293 2794437 DVU0554 Desulfovibrio vulgaris str. Hildenborough NAD-dependent epimerase/dehydratase YP_009777.1 623355 D 882 CDS YP_009778.1 46578970 2795338 624333..624587 1 NC_002937.3 hypothetical protein 624587 2795338 DVU0555 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009778.1 624333 D 882 CDS YP_009779.1 46578971 2795339 624615..624878 1 NC_002937.3 identified by similarity to GP:14286345; match to protein family HMM PF01527; ISDvu3, transposase OrfA 624878 2795339 DVU0556 Desulfovibrio vulgaris str. Hildenborough ISDvu3, transposase OrfA YP_009779.1 624615 D 882 CDS YP_009780.1 46578972 2795341 626376..626501 1 NC_002937.3 hypothetical protein 626501 2795341 DVU0558 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009780.1 626376 D 882 CDS YP_009782.2 304569685 2794780 626553..627134 1 NC_002937.3 identified by similarity to OMNI:MT0861; hypothetical protein 627134 2794780 DVU0560 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009782.2 626553 D 882 CDS YP_009783.1 46578975 2794781 627172..628275 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 628275 2794781 DVU0561 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_009783.1 627172 D 882 CDS YP_009784.1 46578976 2794782 628388..628654 1 NC_002937.3 identified by similarity to GP:2645860; match to protein family HMM PF01527; ISD1, transposase OrfA 628654 2794782 DVU0562 Desulfovibrio vulgaris str. Hildenborough ISD1, transposase OrfA YP_009784.1 628388 D 882 CDS YP_009785.1 46578977 2794783 628675..629499 1 NC_002937.3 identified by similarity to GP:2645861; match to protein family HMM PF00665; ISD1, transposase OrfB 629499 2794783 DVU0563 Desulfovibrio vulgaris str. Hildenborough ISD1, transposase OrfB YP_009785.1 628675 D 882 CDS YP_009786.1 46578978 2795889 complement(629480..629875) 1 NC_002937.3 identified by similarity to OMNI:SO3543; ISDvu4, transposase, truncation 629875 2795889 DVU0564 Desulfovibrio vulgaris str. Hildenborough ISDvu4, transposase, truncation YP_009786.1 629480 R 882 CDS YP_009787.1 46578979 2795890 complement(630087..631103) 1 NC_002937.3 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 631103 gap-1 2795890 gap-1 Desulfovibrio vulgaris str. Hildenborough glyceraldehyde 3-phosphate dehydrogenase YP_009787.1 630087 R 882 CDS YP_009788.1 46578980 2795891 complement(631123..631680) 1 NC_002937.3 identified by match to protein family HMM PF01590; GAF domain-containing protein 631680 2795891 DVU0566 Desulfovibrio vulgaris str. Hildenborough GAF domain-containing protein YP_009788.1 631123 R 882 CDS YP_009789.1 46578981 2795892 complement(631895..632974) 1 NC_002937.3 identified by match to protein family HMM PF03741; TerC family protein 632974 2795892 DVU0567 Desulfovibrio vulgaris str. Hildenborough TerC family protein YP_009789.1 631895 R 882 CDS YP_009790.1 46578982 2795893 complement(633096..634136) 1 NC_002937.3 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 634136 2795893 DVU0568 Desulfovibrio vulgaris str. Hildenborough tRNA 2-selenouridine synthase YP_009790.1 633096 R 882 CDS YP_009791.1 46578983 2795894 634415..635995 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 635995 2795894 DVU0569 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_009791.1 634415 D 882 CDS YP_009792.1 46578984 2793415 635992..636168 1 NC_002937.3 hypothetical protein 636168 2793415 DVU0570 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009792.1 635992 D 882 CDS YP_009793.1 46578985 2793416 636374..637486 1 NC_002937.3 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 637486 ald 2793416 ald Desulfovibrio vulgaris str. Hildenborough alanine dehydrogenase YP_009793.1 636374 D 882 CDS YP_009794.1 46578986 2793417 637893..638231 1 NC_002937.3 hypothetical protein 638231 2793417 DVU0572 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009794.1 637893 D 882 CDS YP_009795.1 46578987 2793418 638724..639149 1 NC_002937.3 identified by similarity to SP:P08367; creA protein 639149 creA 2793418 creA Desulfovibrio vulgaris str. Hildenborough creA protein YP_009795.1 638724 D 882 CDS YP_003858605.1 304569766 9714858 639295..639978 1 NC_002937.3 hypothetical protein 639978 9714858 DVU4025 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858605.1 639295 D 882 CDS YP_009797.1 46578989 2793420 complement(640283..640564) 1 NC_002937.3 hypothetical protein 640564 2793420 DVU0575 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009797.1 640283 R 882 CDS YP_009798.1 46578990 2793421 complement(640793..641224) 1 NC_002937.3 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 641224 msrB 2793421 msrB Desulfovibrio vulgaris str. Hildenborough methionine sulfoxide reductase B YP_009798.1 640793 R 882 CDS YP_009799.1 46578991 2794562 641591..642472 1 NC_002937.3 identified by similarity to SP:P44452; formate dehydrogenase formation protein FdhE 642472 2794562 DVU0577 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase formation protein FdhE YP_009799.1 641591 D 882 CDS YP_009800.1 46578992 2794563 642474..643262 1 NC_002937.3 identified by match to protein family HMM PF02634; formate dehydrogenase accessory protein FdhD 643262 2794563 DVU0578 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase accessory protein FdhD YP_009800.1 642474 D 882 CDS YP_009801.1 46578993 2794564 643259..643927 1 NC_002937.3 identified by similarity to SP:O31701; molybdopterin-guanine dinucleotide biosynthesis protein A 643927 2794564 DVU0579 Desulfovibrio vulgaris str. Hildenborough molybdopterin-guanine dinucleotide biosynthesis protein A YP_009801.1 643259 D 882 CDS YP_009802.1 46578994 2794565 643924..644949 1 NC_002937.3 identified by similarity to SP:Q44118; match to protein family HMM PF04055; molybdenum cofactor biosynthesis protein A 644949 moaA 2794565 moaA Desulfovibrio vulgaris str. Hildenborough molybdenum cofactor biosynthesis protein A YP_009802.1 643924 D 882 CDS YP_009803.1 46578995 2794566 complement(645186..645887) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator/anti-anti-sigma factor 645887 2794566 DVU0581 Desulfovibrio vulgaris str. Hildenborough response regulator/anti-anti-sigma factor YP_009803.1 645186 R 882 CDS YP_009804.1 46578996 2794567 complement(645923..647941) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 647941 2794567 DVU0582 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009804.1 645923 R 882 CDS YP_009805.1 46578997 2794160 complement(647938..649209) 1 NC_002937.3 identified by match to protein family HMM PF01094; lipoprotein 649209 2794160 DVU0583 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009805.1 647938 R 882 CDS YP_009806.1 46578998 2794161 649275..650213 1 NC_002937.3 identified by similarity to OMNI:NTL01NM00438; transposase 650213 2794161 DVU0584 Desulfovibrio vulgaris str. Hildenborough transposase YP_009806.1 649275 D 882 CDS YP_009807.1 46578999 2794162 complement(650376..652769) 1 NC_002937.3 identified by similarity to OMNI:NTL01PF1838; hypothetical protein 652769 2794162 DVU0585 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009807.1 650376 R 882 CDS YP_009808.1 46579000 2794163 653145..653369 1 NC_002937.3 hypothetical protein 653369 2794163 DVU0586 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009808.1 653145 D 882 CDS YP_009809.1 46579001 2794164 653387..656404 1 NC_002937.3 selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase subunit alpha 656404 fdnG-1 2794164 fdnG-1 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase subunit alpha YP_009809.1 653387 D 882 CDS YP_009810.1 46579002 2794165 656416..657126 1 NC_002937.3 identified by similarity to SP:P32175; formate dehydrogenase subunit beta 657126 2794165 DVU0588 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase subunit beta YP_009810.1 656416 D 882 CDS YP_009811.1 46579003 2794166 657590..658330 1 NC_002937.3 identified by match to protein family HMM PF03205; match to protein family HMM PF04060; molybdopterin-guanine dinucleotide biosynthesis protein MobB 658330 2794166 DVU0589 Desulfovibrio vulgaris str. Hildenborough molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_009811.1 657590 D 882 CDS YP_009812.1 46579004 2794088 658718..659122 1 NC_002937.3 hypothetical protein 659122 2794088 DVU0590 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009812.1 658718 D 882 CDS YP_009813.1 46579005 2794089 659306..661264 1 NC_002937.3 identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 661264 2794089 DVU0591 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009813.1 659306 D 882 CDS YP_009814.1 46579006 2794090 661310..661831 1 NC_002937.3 identified by similarity to SP:P07365; match to protein family HMM PF01584; chemotaxis protein CheW 661831 cheW-1 2794090 cheW-1 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheW YP_009814.1 661310 D 882 CDS YP_009815.1 46579007 2794091 complement(662191..662811) 1 NC_002937.3 identified by match to protein family HMM PF01810; L-lysine exporter 662811 2794091 DVU0593 Desulfovibrio vulgaris str. Hildenborough L-lysine exporter YP_009815.1 662191 R 882 CDS YP_009816.1 46579008 2794092 662909..663811 1 NC_002937.3 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 663811 iciA 2794092 iciA Desulfovibrio vulgaris str. Hildenborough chromosome replication initiation inhibitor protein YP_009816.1 662909 D 882 CDS YP_009817.1 46579009 2794093 663965..664312 1 NC_002937.3 identified by similarity to OMNI:AF0913; hypothetical protein 664312 2794093 DVU0595 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009817.1 663965 D 882 CDS YP_009818.1 46579010 2793524 664472..665245 1 NC_002937.3 identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator LytR 665245 lytR 2793524 lytR Desulfovibrio vulgaris str. Hildenborough DNA-binding response regulator LytR YP_009818.1 664472 D 882 CDS YP_009819.1 46579011 2793525 665371..667086 1 NC_002937.3 identified by similarity to GP:862312; match to protein family HMM PF02518; regulatory protein LytS 667086 lytS 2793525 lytS Desulfovibrio vulgaris str. Hildenborough regulatory protein LytS YP_009819.1 665371 D 882 CDS YP_009820.1 46579012 2793526 667290..668711 1 NC_002937.3 identified by match to protein family HMM PF02554; carbon starvation protein A 668711 2793526 DVU0598 Desulfovibrio vulgaris str. Hildenborough carbon starvation protein A YP_009820.1 667290 D 882 CDS YP_009821.1 46579013 2793527 669038..670459 1 NC_002937.3 identified by match to protein family HMM PF02554; carbon starvation protein A 670459 2793527 DVU0599 Desulfovibrio vulgaris str. Hildenborough carbon starvation protein A YP_009821.1 669038 D 882 CDS YP_009822.1 46579014 2793528 670757..671686 1 NC_002937.3 identified by similarity to SP:P00345; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 671686 ldh 2793528 ldh Desulfovibrio vulgaris str. Hildenborough L-lactate dehydrogenase YP_009822.1 670757 D 882 CDS YP_009823.1 46579015 2793529 672098..672532 1 NC_002937.3 identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369; phenylacetic acid degradation protein PaaI 672532 2793529 DVU0601 Desulfovibrio vulgaris str. Hildenborough phenylacetic acid degradation protein PaaI YP_009823.1 672098 D 882 CDS YP_009824.1 46579016 2793363 complement(672841..673203) 1 NC_002937.3 hypothetical protein 673203 2793363 DVU0602 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009824.1 672841 R 882 CDS YP_009825.1 46579017 2793364 complement(673432..673698) 1 NC_002937.3 hypothetical protein 673698 2793364 DVU0603 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009825.1 673432 R 882 CDS YP_009826.1 46579018 2793365 complement(673695..673826) 1 NC_002937.3 hypothetical protein 673826 2793365 DVU0604 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009826.1 673695 R 882 CDS YP_009827.1 46579019 2793366 673809..673937 1 NC_002937.3 hypothetical protein 673937 2793366 DVU0605 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009827.1 673809 D 882 CDS YP_009828.1 46579020 2793367 674210..675133 1 NC_002937.3 identified by match to protein family HMM PF01022; match to protein family HMM PF01209; ArsR family transcriptional regulator 675133 2793367 DVU0606 Desulfovibrio vulgaris str. Hildenborough ArsR family transcriptional regulator YP_009828.1 674210 D 882 CDS YP_009829.1 46579021 2793368 675159..676598 1 NC_002937.3 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 676598 ahcY 2793368 ahcY Desulfovibrio vulgaris str. Hildenborough S-adenosyl-L-homocysteine hydrolase YP_009829.1 675159 D 882 CDS YP_009830.1 46579022 2794094 complement(676751..678784) 1 NC_002937.3 identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 678784 2794094 DVU0608 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009830.1 676751 R 882 CDS YP_009831.1 46579023 2794095 complement(678940..679575) 1 NC_002937.3 identified by similarity to OMNI:NTL01SM01830; lipoprotein 679575 2794095 DVU0609 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009831.1 678940 R 882 CDS YP_009832.1 46579024 2794096 complement(679572..680492) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA03213; match to protein family HMM PF02470; hypothetical protein 680492 2794096 DVU0610 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009832.1 679572 R 882 CDS YP_009833.1 46579025 2794097 complement(680517..681344) 1 NC_002937.3 identified by similarity to GP:21109946; match to protein family HMM PF00005; ABC transporter ATP-binding protein 681344 2794097 DVU0611 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_009833.1 680517 R 882 CDS YP_009834.1 46579026 2794098 complement(681360..682580) 1 NC_002937.3 identified by similarity to GP:9106294; match to protein family HMM PF01740; match to protein family HMM PF02405; match to protein family HMM TIGR00056; STAS domain-containing protein 682580 2794098 DVU0612 Desulfovibrio vulgaris str. Hildenborough STAS domain-containing protein YP_009834.1 681360 R 882 CDS YP_009835.1 46579027 2794099 682807..682905 1 NC_002937.3 hypothetical protein 682905 2794099 DVU0613 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009835.1 682807 D 882 CDS YP_009836.1 46579028 2794400 complement(683049..683330) 1 NC_002937.3 hypothetical protein 683330 2794400 DVU0614 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009836.1 683049 R 882 CDS YP_009837.1 46579029 2794401 683330..683494 1 NC_002937.3 hypothetical protein 683494 2794401 DVU0615 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009837.1 683330 D 882 CDS YP_009838.1 46579030 2794402 complement(683510..683902) 1 NC_002937.3 hypothetical protein 683902 2794402 DVU0616 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009838.1 683510 R 882 CDS YP_009839.1 46579031 2794403 complement(683895..684185) 1 NC_002937.3 hypothetical protein 684185 2794403 DVU0617 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009839.1 683895 R 882 CDS YP_009840.1 46579032 2794404 684215..684370 1 NC_002937.3 hypothetical protein 684370 2794404 DVU0618 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009840.1 684215 D 882 CDS YP_009841.1 46579033 2794405 complement(684470..685909) 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 685909 2794405 DVU0619 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_009841.1 684470 R 882 CDS YP_009842.1 46579034 2794406 686025..686408 1 NC_002937.3 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; L-PSP family endoribonuclease 686408 2794406 DVU0620 Desulfovibrio vulgaris str. Hildenborough L-PSP family endoribonuclease YP_009842.1 686025 D 882 CDS YP_009843.1 46579035 2796145 complement(686695..688092) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 688092 2796145 DVU0621 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent DNA-binding response regulator YP_009843.1 686695 R 882 CDS YP_009844.1 46579036 2796146 complement(688231..690729) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 690729 2796146 DVU0622 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase/response regulator YP_009844.1 688231 R 882 CDS YP_009845.1 46579037 2796147 690717..691034 1 NC_002937.3 hypothetical protein 691034 2796147 DVU0623 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009845.1 690717 D 882 CDS YP_009846.1 46579038 2796148 691072..691551 1 NC_002937.3 identified by similarity to SP:P33226; NapC/NirT cytochrome c family protein 691551 2796148 DVU0624 Desulfovibrio vulgaris str. Hildenborough NapC/NirT cytochrome c family protein YP_009846.1 691072 D 882 CDS YP_009847.1 46579039 2796149 691544..693118 1 NC_002937.3 identified by similarity to GP:5748660; match to protein family HMM PF02335; cytochrome c nitrite reductase, catalytic subunit NfrA 693118 2796149 DVU0625 Desulfovibrio vulgaris str. Hildenborough cytochrome c nitrite reductase, catalytic subunit NfrA YP_009847.1 691544 D 882 CDS YP_009848.1 46579040 2796150 693551..694030 1 NC_002937.3 identified by similarity to SP:P37252; match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase small subunit 694030 ilvN-1 2796150 ilvN-1 Desulfovibrio vulgaris str. Hildenborough acetolactate synthase small subunit YP_009848.1 693551 D 882 CDS YP_009849.1 46579041 2796151 694034..695065 1 NC_002937.3 identified by similarity to GP:457633; match to protein family HMM PF01515; phosphotransbutyrylase 695065 ptB 2796151 ptB Desulfovibrio vulgaris str. Hildenborough phosphotransbutyrylase YP_009849.1 694034 D 882 CDS YP_009850.1 46579042 2794550 695062..696180 1 NC_002937.3 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 696180 buk 2794550 buk Desulfovibrio vulgaris str. Hildenborough butyrate kinase YP_009850.1 695062 D 882 CDS YP_009851.1 46579043 2794551 696323..696883 1 NC_002937.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 696883 2794551 DVU0629 Desulfovibrio vulgaris str. Hildenborough TetR family transcriptional regulator YP_009851.1 696323 D 882 CDS YP_009852.1 46579044 2794552 696887..697063 1 NC_002937.3 hypothetical protein 697063 2794552 DVU0630 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009852.1 696887 D 882 CDS YP_009853.1 46579045 2794553 complement(697251..698816) 1 NC_002937.3 identified by similarity to GP:14041200; hypothetical protein 698816 2794553 DVU0631 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009853.1 697251 R 882 CDS YP_009854.1 46579046 2794554 complement(699063..699680) 1 NC_002937.3 identified by match to protein family HMM PF00190; cupin family protein 699680 2794554 DVU0632 Desulfovibrio vulgaris str. Hildenborough cupin family protein YP_009854.1 699063 R 882 CDS YP_009855.1 46579047 2794555 complement(699680..702103) 1 NC_002937.3 identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 702103 2794555 DVU0633 Desulfovibrio vulgaris str. Hildenborough penicillin-binding protein YP_009855.1 699680 R 882 CDS YP_009856.1 46579048 2794556 complement(702115..702681) 1 NC_002937.3 hypothetical protein 702681 2794556 DVU0634 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009856.1 702115 R 882 CDS YP_009857.1 46579049 2794105 complement(702696..704282) 1 NC_002937.3 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 704282 2794105 DVU0635 Desulfovibrio vulgaris str. Hildenborough dolichyl-phosphate-mannose-protein mannosyltransferase YP_009857.1 702696 R 882 CDS YP_009858.1 46579050 2794106 704799..706112 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator/GGDEF domain-containing protein 706112 2794106 DVU0636 Desulfovibrio vulgaris str. Hildenborough response regulator/GGDEF domain-containing protein YP_009858.1 704799 D 882 CDS YP_009859.1 46579051 2794107 706392..707780 1 NC_002937.3 identified by similarity to OMNI:NTL01PH00308; hypothetical protein 707780 2794107 DVU0637 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009859.1 706392 D 882 CDS YP_009860.1 46579052 2794108 complement(707913..708779) 1 NC_002937.3 identified by similarity to OMNI:CT0045; hypothetical protein 708779 2794108 DVU0638 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009860.1 707913 R 882 CDS YP_009861.1 46579053 2794110 complement(709562..710335) 1 NC_002937.3 identified by similarity to GP:2130949; match to protein family HMM PF00691; chemotaxis protein PomB 710335 pomB 2794110 pomB Desulfovibrio vulgaris str. Hildenborough chemotaxis protein PomB YP_009861.1 709562 R 882 CDS YP_009862.1 46579054 2794332 complement(710339..711091) 1 NC_002937.3 identified by similarity to SP:O06873; match to protein family HMM PF01618; chemotaxis protein PomA 711091 pomA 2794332 pomA Desulfovibrio vulgaris str. Hildenborough chemotaxis protein PomA YP_009862.1 710339 R 882 CDS YP_009863.1 46579055 2794333 complement(711092..712240) 1 NC_002937.3 identified by similarity to OMNI:TM0735; hypothetical protein 712240 2794333 DVU0641 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009863.1 711092 R 882 CDS YP_009864.1 46579056 2794334 712640..713452 1 NC_002937.3 identified by similarity to GP:2935027; match to protein family HMM PF00561; alpha/beta fold family hydrolase 713452 2794334 DVU0642 Desulfovibrio vulgaris str. Hildenborough alpha/beta fold family hydrolase YP_009864.1 712640 D 882 CDS YP_009865.1 46579057 2794335 713684..714376 1 NC_002937.3 identified by similarity to SP:P30138; match to protein family HMM PF00899; thiF protein 714376 2794335 DVU0643 Desulfovibrio vulgaris str. Hildenborough thiF protein YP_009865.1 713684 D 882 CDS YP_009866.1 46579058 2794336 complement(714570..714803) 1 NC_002937.3 hypothetical protein 714803 2794336 DVU0644 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009866.1 714570 R 882 CDS YP_009867.1 46579059 2794337 714819..716858 1 NC_002937.3 identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 716858 2794337 DVU0645 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009867.1 714819 D 882 CDS YP_009868.1 46579060 2794338 complement(717068..717838) 1 NC_002937.3 identified by similarity to SP:Q05593; match to protein family HMM PF00590; match to protein family HMM TIGR01467; precorrin-2 C(20)-methyltransferase 717838 cobI 2794338 cobI Desulfovibrio vulgaris str. Hildenborough precorrin-2 C(20)-methyltransferase YP_009868.1 717068 R 882 CDS YP_009869.1 46579061 2795037 complement(717840..718754) 1 NC_002937.3 identified by similarity to OMNI:DRB0007; match to protein family HMM PF01497; iron compound ABC transporter periplasmic iron compount-binding protein 718754 2795037 DVU0647 Desulfovibrio vulgaris str. Hildenborough iron compound ABC transporter periplasmic iron compount-binding protein YP_009869.1 717840 R 882 CDS YP_009870.1 46579062 2795038 complement(718732..719547) 1 NC_002937.3 identified by similarity to SP:P07821; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 719547 2795038 DVU0648 Desulfovibrio vulgaris str. Hildenborough iron compound ABC transporter ATP-binding protein YP_009870.1 718732 R 882 CDS YP_009871.1 46579063 2795039 complement(719544..720599) 1 NC_002937.3 identified by similarity to PIR:S54438; match to protein family HMM PF01032; iron compound ABC transporter permease 720599 2795039 DVU0649 Desulfovibrio vulgaris str. Hildenborough iron compound ABC transporter permease YP_009871.1 719544 R 882 CDS YP_009872.1 46579064 2795040 complement(720601..721494) 1 NC_002937.3 identified by similarity to SP:Q05592; match to protein family HMM PF06180; chelatase 721494 2795040 DVU0650 Desulfovibrio vulgaris str. Hildenborough chelatase YP_009872.1 720601 R 882 CDS YP_009873.1 46579065 2795041 complement(722121..723209) 1 NC_002937.3 hypothetical protein 723209 2795041 DVU0651 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009873.1 722121 R 882 CDS YP_009874.1 46579066 2795042 723349..724299 1 NC_002937.3 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 724299 cheV-2 2795042 cheV-2 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheV YP_009874.1 723349 D 882 CDS YP_009875.1 46579067 2795043 complement(724910..726595) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator /response regulator 726595 2795043 DVU0653 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator /response regulator YP_009875.1 724910 R 882 CDS YP_009876.1 46579068 2794240 complement(726616..727842) 1 NC_002937.3 identified by match to protein family HMM PF01136; U32 family peptidase 727842 2794240 DVU0654 Desulfovibrio vulgaris str. Hildenborough U32 family peptidase YP_009876.1 726616 R 882 CDS YP_009877.1 46579069 2794241 complement(727882..728748) 1 NC_002937.3 identified by match to protein family HMM PF02231; phosphotransferase domain-containing protein 728748 2794241 DVU0655 Desulfovibrio vulgaris str. Hildenborough phosphotransferase domain-containing protein YP_009877.1 727882 R 882 CDS YP_009878.1 46579070 2794242 728887..729096 1 NC_002937.3 identified by similarity to OMNI:NTL02SC2888; match to protein family HMM PF03966; hypothetical protein 729096 2794242 DVU0656 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009878.1 728887 D 882 CDS YP_009879.1 46579071 2794243 729163..729576 1 NC_002937.3 identified by match to protein family HMM PF00011; HSP20 family protein 729576 2794243 DVU0657 Desulfovibrio vulgaris str. Hildenborough HSP20 family protein YP_009879.1 729163 D 882 CDS YP_009880.1 46579072 2794244 729587..730048 1 NC_002937.3 identified by match to protein family HMM PF00011; HSP20 family protein 730048 2794244 DVU0658 Desulfovibrio vulgaris str. Hildenborough HSP20 family protein YP_009880.1 729587 D 882 CDS YP_009881.1 46579073 2794245 complement(730307..731077) 1 NC_002937.3 hypothetical protein 731077 2794245 DVU0659 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009881.1 730307 R 882 CDS YP_009882.1 46579074 2794246 731288..731854 1 NC_002937.3 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 731854 2794246 DVU0660 Desulfovibrio vulgaris str. Hildenborough phosphodiesterase YP_009882.1 731288 D 882 CDS YP_009883.1 46579075 2793600 732072..733070 1 NC_002937.3 identified by match to protein family HMM PF01207; dihydrouridine synthase 733070 2793600 DVU0661 Desulfovibrio vulgaris str. Hildenborough dihydrouridine synthase YP_009883.1 732072 D 882 CDS YP_009884.1 46579076 2793601 complement(733256..734227) 1 NC_002937.3 identified by similarity to SP:Q59967; match to protein family HMM PF00132; serine O-acetyltransferase 734227 cysE 2793601 cysE Desulfovibrio vulgaris str. Hildenborough serine O-acetyltransferase YP_009884.1 733256 R 882 CDS YP_009885.1 46579077 2793602 complement(734395..735321) 1 NC_002937.3 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 735321 cysK 2793602 cysK Desulfovibrio vulgaris str. Hildenborough cysteine synthase A YP_009885.1 734395 R 882 CDS YP_009886.1 46579078 2793603 complement(735449..736633) 1 NC_002937.3 identified by similarity to SP:O54055; match to protein family HMM PF00266; cysteine desulfurase 736633 2793603 DVU0664 Desulfovibrio vulgaris str. Hildenborough cysteine desulfurase YP_009886.1 735449 R 882 CDS YP_009887.1 46579079 2793604 complement(736630..737475) 1 NC_002937.3 identified by similarity to SP:P20628; match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; nitrogen fixation protein nifU 737475 2793604 DVU0665 Desulfovibrio vulgaris str. Hildenborough nitrogen fixation protein nifU YP_009887.1 736630 R 882 CDS YP_009888.1 46579080 2793605 complement(737572..738570) 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 738570 2793605 DVU0666 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_009888.1 737572 R 882 CDS YP_009889.1 46579081 2793606 complement(738684..739673) 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 739673 2793606 DVU0667 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_009889.1 738684 R 882 CDS YP_009890.1 46579082 2794692 739843..741429 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 741429 2794692 DVU0668 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009890.1 739843 D 882 CDS YP_009891.1 46579083 2794693 741595..742365 1 NC_002937.3 hypothetical protein 742365 2794693 DVU0669 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009891.1 741595 D 882 CDS YP_009892.1 46579084 2794694 742386..743657 1 NC_002937.3 identified by match to protein family HMM PF04932; exopolysaccharide production protein 743657 2794694 DVU0670 Desulfovibrio vulgaris str. Hildenborough exopolysaccharide production protein YP_009892.1 742386 D 882 CDS YP_009893.1 46579085 2794695 complement(743817..745454) 1 NC_002937.3 identified by similarity to OMNI:TM1058; hypothetical protein 745454 2794695 DVU0671 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009893.1 743817 R 882 CDS YP_009894.1 46579086 2794696 745612..745764 1 NC_002937.3 hypothetical protein 745764 2794696 DVU0672 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009894.1 745612 D 882 CDS YP_009895.1 46579087 2794697 complement(745815..745982) 1 NC_002937.3 hypothetical protein 745982 2794697 DVU0673 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009895.1 745815 R 882 CDS YP_009896.1 46579088 2794698 746331..747146 1 NC_002937.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 747146 2794698 DVU0674 Desulfovibrio vulgaris str. Hildenborough His/Glu/Gln/Arg/opine ABC transporter permease YP_009896.1 746331 D 882 CDS YP_009897.1 46579089 2794167 747176..747997 1 NC_002937.3 identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein 747997 2794167 DVU0675 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter periplasmic amino acid-binding protein YP_009897.1 747176 D 882 CDS YP_009898.1 46579090 2794168 748069..748956 1 NC_002937.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 748956 2794168 DVU0676 Desulfovibrio vulgaris str. Hildenborough His/Glu/Gln/Arg/opine ABC transporter permease YP_009898.1 748069 D 882 CDS YP_009899.1 46579091 2794169 complement(749238..750287) 1 NC_002937.3 identified by similarity to SP:P41052; transglycosylase 750287 2794169 DVU0677 Desulfovibrio vulgaris str. Hildenborough transglycosylase YP_009899.1 749238 R 882 CDS YP_009900.1 46579092 2794170 750440..750544 1 NC_002937.3 hypothetical protein 750544 2794170 DVU0678 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009900.1 750440 D 882 CDS YP_009901.1 46579093 2794171 complement(750641..752107) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 752107 2794171 DVU0679 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_009901.1 750641 R 882 CDS YP_009902.1 46579094 2794172 complement(752095..754167) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 754167 2794172 DVU0680 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009902.1 752095 R 882 CDS YP_009903.1 46579095 2795331 complement(754029..756032) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 756032 2795331 DVU0681 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase/response regulator YP_009903.1 754029 R 882 CDS YP_009904.1 46579096 2795332 complement(756252..757040) 1 NC_002937.3 DNA-binding protein 757040 2795332 DVU0682 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_009904.1 756252 R 882 CDS YP_009905.1 46579097 2795333 complement(757279..758130) 1 NC_002937.3 identified by similarity to SP:P25661; match to protein family HMM PF01145; hflC protein 758130 2795333 DVU0683 Desulfovibrio vulgaris str. Hildenborough hflC protein YP_009905.1 757279 R 882 CDS YP_009906.1 46579098 2795334 complement(758132..759268) 1 NC_002937.3 identified by similarity to SP:P25662; match to protein family HMM PF01145; hflK protein 759268 2795334 DVU0684 Desulfovibrio vulgaris str. Hildenborough hflK protein YP_009906.1 758132 R 882 CDS YP_009907.1 46579099 2795335 759320..760681 1 NC_002937.3 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 760681 2795335 DVU0685 Desulfovibrio vulgaris str. Hildenborough phosphomannomutase YP_009907.1 759320 D 882 CDS YP_009908.1 46579100 2795336 760765..761253 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 761253 2795336 DVU0686 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_009908.1 760765 D 882 CDS YP_009909.1 46579101 2795337 761222..763006 1 NC_002937.3 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730; tungsten-containing aldehyde:ferredoxin oxidoreductase 763006 2795337 DVU0687 Desulfovibrio vulgaris str. Hildenborough tungsten-containing aldehyde:ferredoxin oxidoreductase YP_009909.1 761222 D 882 CDS YP_009910.1 46579102 2793628 763007..763507 1 NC_002937.3 hypothetical protein 763507 2793628 DVU0688 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009910.1 763007 D 882 CDS YP_009911.1 46579103 2793629 763517..763987 1 NC_002937.3 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 763987 rnhA 2793629 rnhA Desulfovibrio vulgaris str. Hildenborough ribonuclease H YP_009911.1 763517 D 882 CDS YP_009912.1 46579104 2793630 764349..765020 1 NC_002937.3 identified by similarity to GP:28809584; hypothetical protein 765020 2793630 DVU0690 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009912.1 764349 D 882 CDS YP_009913.1 46579105 2793631 765035..765994 1 NC_002937.3 hypothetical protein 765994 2793631 DVU0691 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009913.1 765035 D 882 CDS YP_009914.1 46579106 2793632 complement(766527..767786) 1 NC_002937.3 identified by similarity to SP:P37180; molybdopterin oxidoreductase, transmembrane subunit 767786 2793632 DVU0692 Desulfovibrio vulgaris str. Hildenborough molybdopterin oxidoreductase, transmembrane subunit YP_009914.1 766527 R 882 CDS YP_009915.1 46579107 2793633 complement(767790..768557) 1 NC_002937.3 identified by similarity to SP:P31076; match to protein family HMM PF00037; molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit 768557 2793633 DVU0693 Desulfovibrio vulgaris str. Hildenborough molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit YP_009915.1 767790 R 882 CDS YP_009916.1 46579108 2793634 complement(768570..770645) 1 NC_002937.3 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01409; molybdopterin oxidoreductase, molybdopterin-binding subunit 770645 2793634 DVU0694 Desulfovibrio vulgaris str. Hildenborough molybdopterin oxidoreductase, molybdopterin-binding subunit YP_009916.1 768570 R 882 CDS YP_003858606.1 304569768 9714857 complement(770661..771293) 1 NC_002937.3 hypothetical protein 771293 9714857 DVU4027 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858606.1 770661 R 882 CDS YP_009918.1 46579110 2794447 771610..771738 1 NC_002937.3 hypothetical protein 771738 2794447 DVU0696 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009918.1 771610 D 882 CDS YP_009919.1 46579111 2794448 complement(771808..773226) 1 NC_002937.3 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 773226 2794448 DVU0697 Desulfovibrio vulgaris str. Hildenborough mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_009919.1 771808 R 882 CDS YP_009920.1 46579112 2794449 complement(773223..773795) 1 NC_002937.3 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 773795 rfbC 2794449 rfbC Desulfovibrio vulgaris str. Hildenborough dTDP-4-dehydrorhamnose 3,5-epimerase YP_009920.1 773223 R 882 CDS YP_009921.1 46579113 2794452 complement(776063..778519) 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 778519 2794452 DVU0700 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009921.1 776063 R 882 CDS YP_009922.1 46579114 2795485 778761..780950 1 NC_002937.3 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 780950 glcB 2795485 glcB Desulfovibrio vulgaris str. Hildenborough malate synthase G YP_009922.1 778761 D 882 CDS YP_009923.1 46579115 2795486 781566..782012 1 NC_002937.3 identified by similarity to SP:Q57142; cytochrome c family protein 782012 2795486 DVU0702 Desulfovibrio vulgaris str. Hildenborough cytochrome c family protein YP_009923.1 781566 D 882 CDS YP_009924.1 46579116 2795487 782190..783995 1 NC_002937.3 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 783995 lepA 2795487 lepA Desulfovibrio vulgaris str. Hildenborough GTP-binding protein LepA YP_009924.1 782190 D 882 CDS YP_009925.1 46579117 2795488 784042..784641 1 NC_002937.3 identified by similarity to SP:P26844; match to protein family HMM PF00461; signal peptidase I 784641 lepB 2795488 lepB Desulfovibrio vulgaris str. Hildenborough signal peptidase I YP_009925.1 784042 D 882 CDS YP_009926.1 46579118 2795489 complement(785091..786374) 1 NC_002937.3 identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786; TRAP C4-dicarboxylate transport system permease DctM 786374 dctM 2795489 dctM Desulfovibrio vulgaris str. Hildenborough TRAP C4-dicarboxylate transport system permease DctM YP_009926.1 785091 R 882 CDS YP_009927.1 46579119 2795490 complement(786371..786841) 1 NC_002937.3 identified by match to protein family HMM PF04290; TRAP C4-dicarboxylate transport system subunit DctQ 786841 2795490 DVU0706 Desulfovibrio vulgaris str. Hildenborough TRAP C4-dicarboxylate transport system subunit DctQ YP_009927.1 786371 R 882 CDS YP_009928.1 46579120 2795491 complement(786926..787942) 1 NC_002937.3 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate family transporter subunit DctP 787942 dctP 2795491 dctP Desulfovibrio vulgaris str. Hildenborough TRAP dicarboxylate family transporter subunit DctP YP_009928.1 786926 R 882 CDS YP_009929.1 46579121 2795404 788163..788315 1 NC_002937.3 hypothetical protein 788315 2795404 DVU0708 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009929.1 788163 D 882 CDS YP_009930.1 46579122 2795405 788176..788436 1 NC_002937.3 hypothetical protein 788436 2795405 DVU0709 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009930.1 788176 D 882 CDS YP_009931.1 46579123 2795406 788925..790589 1 NC_002937.3 identified by similarity to SP:P45049; match to protein family HMM PF01078; match to protein family HMM TIGR00368; competence protein comM 790589 2795406 DVU0710 Desulfovibrio vulgaris str. Hildenborough competence protein comM YP_009931.1 788925 D 882 CDS YP_009932.1 46579124 2795407 790673..791314 1 NC_002937.3 hypothetical protein 791314 2795407 DVU0711 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009932.1 790673 D 882 CDS YP_009933.1 46579125 2795408 791681..792811 1 NC_002937.3 identified by match to protein family HMM PF01094; amino acid ABC transporter periplasmic-binding protein 792811 2795408 DVU0712 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter periplasmic-binding protein YP_009933.1 791681 D 882 CDS YP_009934.1 46579126 2795409 792889..793794 1 NC_002937.3 identified by similarity to SP:P08340; match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 793794 2795409 DVU0713 Desulfovibrio vulgaris str. Hildenborough branched-chain amino acid ABC transporter permease YP_009934.1 792889 D 882 CDS YP_009935.1 46579127 2795410 793791..794744 1 NC_002937.3 identified by match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 794744 2795410 DVU0714 Desulfovibrio vulgaris str. Hildenborough branched-chain amino acid ABC transporter permease YP_009935.1 793791 D 882 CDS YP_009936.1 46579128 2793614 794741..795508 1 NC_002937.3 identified by similarity to SP:P22730; match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 795508 2793614 DVU0715 Desulfovibrio vulgaris str. Hildenborough branched-chain amino acid ABC transporter ATP-binding protein YP_009936.1 794741 D 882 CDS YP_009937.1 46579129 2793615 795522..796238 1 NC_002937.3 identified by similarity to SP:P22731; match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 796238 2793615 DVU0716 Desulfovibrio vulgaris str. Hildenborough branched-chain amino acid ABC transporter ATP-binding protein YP_009937.1 795522 D 882 CDS YP_009938.1 46579130 2793616 complement(796457..797965) 1 NC_002937.3 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 797965 2793616 DVU0717 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_009938.1 796457 R 882 CDS YP_009939.1 46579131 2793617 798061..798459 1 NC_002937.3 identified by match to protein family HMM PF01527; ISDvu2, transposase OrfA 798459 2793617 DVU0718 Desulfovibrio vulgaris str. Hildenborough ISDvu2, transposase OrfA YP_009939.1 798061 D 882 CDS YP_009940.1 46579132 2793618 798456..799298 1 NC_002937.3 identified by match to protein family HMM PF00665; ISDvu2, transposase OrfB 799298 2793618 DVU0719 Desulfovibrio vulgaris str. Hildenborough ISDvu2, transposase OrfB YP_009940.1 798456 D 882 CDS YP_009941.1 46579133 2793619 complement(799261..800550) 1 NC_002937.3 identified by match to protein family HMM PF00672; HAMP domain-containing protein 800550 2793619 DVU0720 Desulfovibrio vulgaris str. Hildenborough HAMP domain-containing protein YP_009941.1 799261 R 882 CDS YP_009942.1 46579134 2793620 800645..803455 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 803455 2793620 DVU0721 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009942.1 800645 D 882 CDS YP_009943.1 46579135 2793621 803442..804998 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; response regulator 804998 2793621 DVU0722 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009943.1 803442 D 882 CDS YP_009944.1 46579136 2794128 805115..806296 1 NC_002937.3 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 806296 purT 2794128 purT Desulfovibrio vulgaris str. Hildenborough phosphoribosylglycinamide formyltransferase 2 YP_009944.1 805115 D 882 CDS YP_009945.1 46579137 2794129 complement(806523..807929) 1 NC_002937.3 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium/alanine symporter family protein 807929 2794129 DVU0724 Desulfovibrio vulgaris str. Hildenborough sodium/alanine symporter family protein YP_009945.1 806523 R 882 CDS YP_009946.1 46579138 2794130 complement(808323..810470) 1 NC_002937.3 identified by similarity to OMNI:NTL01MM0619; match to protein family HMM PF03190; hypothetical protein 810470 2794130 DVU0725 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009946.1 808323 R 882 CDS YP_009947.1 46579139 2794131 complement(810938..812065) 1 NC_002937.3 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 812065 tgt 2794131 tgt Desulfovibrio vulgaris str. Hildenborough queuine tRNA-ribosyltransferase YP_009947.1 810938 R 882 CDS YP_009948.1 46579140 2794132 complement(812110..812784) 1 NC_002937.3 identified by similarity to OMNI:NTL02AT2357; match to protein family HMM TIGR02117; hypothetical protein 812784 2794132 DVU0727 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009948.1 812110 R 882 CDS YP_009949.1 46579141 2794133 complement(812813..812983) 1 NC_002937.3 hypothetical protein 812983 2794133 DVU0728 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009949.1 812813 R 882 CDS YP_009950.1 46579142 2794134 813205..813660 1 NC_002937.3 hypothetical protein 813660 2794134 DVU0729 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009950.1 813205 D 882 CDS YP_009951.1 46579143 2794944 complement(814050..815015) 1 NC_002937.3 identified by similarity to OMNI:NTL01TT1685; hypothetical protein 815015 2794944 DVU0730 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009951.1 814050 R 882 CDS YP_009952.1 46579144 2794945 complement(815020..816381) 1 NC_002937.3 hypothetical protein 816381 2794945 DVU0731 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009952.1 815020 R 882 CDS YP_009953.1 46579145 2794946 816473..819127 1 NC_002937.3 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 819127 valS 2794946 valS Desulfovibrio vulgaris str. Hildenborough valyl-tRNA synthetase YP_009953.1 816473 D 882 CDS YP_009954.1 46579146 2794947 819244..819732 1 NC_002937.3 identified by similarity to OMNI:NTL02MA2200; hypothetical protein 819732 2794947 DVU0733 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009954.1 819244 D 882 CDS YP_009955.1 46579147 2794948 819967..821478 1 NC_002937.3 identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469; uroporphyrinogen III synthase/methyltransferase 821478 2794948 DVU0734 Desulfovibrio vulgaris str. Hildenborough uroporphyrinogen III synthase/methyltransferase YP_009955.1 819967 D 882 CDS YP_009956.1 46579148 2794949 822186..822620 1 NC_002937.3 identified by match to protein family HMM PF03473; MOSC domain-containing protein 822620 2794949 DVU0735 Desulfovibrio vulgaris str. Hildenborough MOSC domain-containing protein YP_009956.1 822186 D 882 CDS YP_009957.1 46579149 2794950 822647..823324 1 NC_002937.3 identified by similarity to SP:P08179; match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 823324 purN 2794950 purN Desulfovibrio vulgaris str. Hildenborough phosphoribosylglycinamide formyltransferase YP_009957.1 822647 D 882 CDS YP_009958.1 46579150 2794951 complement(823577..825817) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 825817 2794951 DVU0737 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009958.1 823577 R 882 CDS YP_009959.1 46579151 2795254 complement(825817..826938) 1 NC_002937.3 identified by match to protein family HMM PF01094; ABC transporter substrate-binding protein 826938 2795254 DVU0738 Desulfovibrio vulgaris str. Hildenborough ABC transporter substrate-binding protein YP_009959.1 825817 R 882 CDS YP_009960.1 46579152 2795255 827065..827637 1 NC_002937.3 identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296; hypothetical protein 827637 2795255 DVU0739 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009960.1 827065 D 882 CDS YP_009961.1 46579153 2795256 827914..829089 1 NC_002937.3 hypothetical protein 829089 2795256 DVU0740 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009961.1 827914 D 882 CDS YP_009962.1 46579154 2795257 829146..829622 1 NC_002937.3 hypothetical protein 829622 2795257 DVU0741 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009962.1 829146 D 882 CDS YP_009963.1 46579155 2795258 829630..830466 1 NC_002937.3 hypothetical protein 830466 2795258 DVU0742 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009963.1 829630 D 882 CDS YP_009964.1 46579156 2795259 830471..832468 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 832468 2795259 DVU0743 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009964.1 830471 D 882 CDS YP_009965.1 46579157 2795260 832468..834177 1 NC_002937.3 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 834177 2795260 DVU0744 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_009965.1 832468 D 882 CDS YP_009966.1 46579158 2795261 834410..835228 1 NC_002937.3 identified by similarity to GP:14330288; match to protein family HMM PF01547; ABC transporter periplasmic substrate-binding protein 835228 2795261 DVU0745 Desulfovibrio vulgaris str. Hildenborough ABC transporter periplasmic substrate-binding protein YP_009966.1 834410 D 882 CDS YP_009967.1 46579159 2794964 835639..836385 1 NC_002937.3 identified by similarity to GP:20906056; match to protein family HMM PF00528; ABC transporter permease 836385 2794964 DVU0746 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_009967.1 835639 D 882 CDS YP_009968.1 46579160 2794965 836382..837020 1 NC_002937.3 identified by similarity to OMNI:CC1598; match to protein family HMM PF00005; ABC transporter ATP-binding protein 837020 2794965 DVU0747 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_009968.1 836382 D 882 CDS YP_009969.1 46579161 2794966 complement(837106..839052) 1 NC_002937.3 identified by similarity to SP:P27095; match to protein family HMM PF00501; acetyl-CoA synthetase 839052 acs 2794966 acs Desulfovibrio vulgaris str. Hildenborough acetyl-CoA synthetase YP_009969.1 837106 R 882 CDS YP_009970.1 46579162 2794967 complement(839102..840031) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator 840031 2794967 DVU0749 Desulfovibrio vulgaris str. Hildenborough DNA-binding response regulator YP_009970.1 839102 R 882 CDS YP_009971.1 46579163 2794968 complement(840322..842331) 1 NC_002937.3 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 842331 2794968 DVU0750 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_009971.1 840322 R 882 CDS YP_009972.1 46579164 2794969 complement(842727..844517) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA02202; similarity to OMNI:NTL03PA04194; match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 844517 2794969 DVU0751 Desulfovibrio vulgaris str. Hildenborough His/Glu/Gln/Arg/opine ABC transporter permease YP_009972.1 842727 R 882 CDS YP_009973.1 46579165 2794970 complement(844606..845433) 1 NC_002937.3 identified by match to protein family HMM PF00497; amino acid ABC transporter amino acid-binding protein 845433 2794970 DVU0752 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter amino acid-binding protein YP_009973.1 844606 R 882 CDS YP_009974.1 46579166 2793592 complement(845531..846262) 1 NC_002937.3 identified by similarity to SP:P27675; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 846262 2793592 DVU0753 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter ATP-binding protein YP_009974.1 845531 R 882 CDS YP_009975.1 46579167 2793593 complement(846259..846393) 1 NC_002937.3 hypothetical protein 846393 2793593 DVU0754 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009975.1 846259 R 882 CDS YP_009976.1 46579168 2793594 complement(846505..847872) 1 NC_002937.3 identified by match to protein family HMM PF02518; sensor histidine kinase 847872 2793594 DVU0755 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_009976.1 846505 R 882 CDS YP_009977.1 46579169 2793595 848084..848797 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 848797 2793595 DVU0756 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009977.1 848084 D 882 CDS YP_009978.1 46579170 2793596 848797..849117 1 NC_002937.3 hypothetical protein 849117 2793596 DVU0757 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009978.1 848797 D 882 CDS YP_009979.1 46579171 2793597 complement(849322..849771) 1 NC_002937.3 hypothetical protein 849771 2793597 DVU0758 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009979.1 849322 R 882 CDS YP_009980.1 46579172 2793598 complement(849749..850954) 1 NC_002937.3 identified by match to protein family HMM PF02073; M29 family peptidase 850954 2793598 DVU0759 Desulfovibrio vulgaris str. Hildenborough M29 family peptidase YP_009980.1 849749 R 882 CDS YP_009981.1 46579173 2793599 complement(851217..852347) 1 NC_002937.3 hypothetical protein 852347 2793599 DVU0760 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009981.1 851217 R 882 CDS YP_009982.1 46579174 2795565 complement(852498..853088) 1 NC_002937.3 lipoprotein 853088 2795565 DVU0761 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_009982.1 852498 R 882 CDS YP_009983.1 46579175 2795566 complement(853114..853584) 1 NC_002937.3 identified by similarity to SP:Q8XBS4; hypothetical protein 853584 2795566 DVU0762 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009983.1 853114 R 882 CDS YP_009984.1 46579176 2795567 853682..854617 1 NC_002937.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 854617 2795567 DVU0763 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_009984.1 853682 D 882 CDS YP_009985.2 304569686 2795568 854707..855012 1 NC_002937.3 identified by similarity to SP:P02341; similarity to SP:P02346; similarity to SP:P08821; similarity to SP:P15148; match to protein family HMM PF00216; DNA-binding protein HU 855012 hup-2 2795568 hup-2 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein HU YP_009985.2 854707 D 882 CDS YP_009986.1 46579178 2795569 complement(855564..856928) 1 NC_002937.3 identified by similarity to SP:Q44472; match to protein family HMM PF05161; hydroxypyruvate reductase 856928 2795569 DVU0765 Desulfovibrio vulgaris str. Hildenborough hydroxypyruvate reductase YP_009986.1 855564 R 882 CDS YP_009987.1 46579179 2795570 857127..857657 1 NC_002937.3 identified by match to protein family HMM PF04972; transporter 857657 2795570 DVU0766 Desulfovibrio vulgaris str. Hildenborough transporter YP_009987.1 857127 D 882 CDS YP_009988.1 46579180 2795571 complement(857778..858884) 1 NC_002937.3 identified by match to protein family HMM PF00266; class V aminotransferase 858884 2795571 DVU0767 Desulfovibrio vulgaris str. Hildenborough class V aminotransferase YP_009988.1 857778 R 882 CDS YP_009989.1 46579181 2795572 complement(858973..859821) 1 NC_002937.3 identified by similarity to SP:P94556; match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase 859821 murI 2795572 murI Desulfovibrio vulgaris str. Hildenborough glutamate racemase YP_009989.1 858973 R 882 CDS YP_009990.1 46579182 2794840 complement(859823..860701) 1 NC_002937.3 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 860701 2794840 DVU0769 Desulfovibrio vulgaris str. Hildenborough pyridoxamine kinase YP_009990.1 859823 R 882 CDS YP_009991.1 46579183 2794841 complement(860983..861933) 1 NC_002937.3 identified by match to protein family HMM PF01925; hypothetical protein 861933 2794841 DVU0770 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009991.1 860983 R 882 CDS YP_009992.1 46579184 2794842 862088..863158 1 NC_002937.3 identified by similarity to SP:P46930; similarity to OMNI:BR2031; match to protein family HMM PF00589; match to protein family HMM PF03459; match to protein family HMM TIGR00638; fused molybdenum-pterin binding domain-containing protein/site-specific recombinase phage integrase 863158 2794842 DVU0771 Desulfovibrio vulgaris str. Hildenborough fused molybdenum-pterin binding domain-containing protein/site-specific recombinase phage integrase YP_009992.1 862088 D 882 CDS YP_009993.1 46579185 2794843 complement(863400..863747) 1 NC_002937.3 hypothetical protein 863747 2794843 DVU0772 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009993.1 863400 R 882 CDS YP_009994.1 46579186 2794844 864023..864262 1 NC_002937.3 hypothetical protein 864262 2794844 DVU0773 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009994.1 864023 D 882 CDS YP_009995.1 46579187 2794845 complement(864389..864793) 1 NC_002937.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 864793 atpC 2794845 atpC Desulfovibrio vulgaris str. Hildenborough F0F1 ATP synthase subunit epsilon YP_009995.1 864389 R 882 CDS YP_009996.1 46579188 2794846 complement(864805..866217) 1 NC_002937.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 866217 atpD 2794846 atpD Desulfovibrio vulgaris str. Hildenborough F0F1 ATP synthase subunit beta YP_009996.1 864805 R 882 CDS YP_009997.1 46579189 2794847 complement(866236..867111) 1 NC_002937.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 867111 atpG 2794847 atpG Desulfovibrio vulgaris str. Hildenborough F0F1 ATP synthase subunit gamma YP_009997.1 866236 R 882 CDS YP_009998.1 46579190 2794762 complement(867128..868636) 1 NC_002937.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 868636 atpA 2794762 atpA Desulfovibrio vulgaris str. Hildenborough F0F1 ATP synthase subunit alpha YP_009998.1 867128 R 882 CDS YP_009999.1 46579191 2794763 complement(868641..869192) 1 NC_002937.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 869192 atpH 2794763 atpH Desulfovibrio vulgaris str. Hildenborough F0F1 ATP synthase subunit delta YP_009999.1 868641 R 882 CDS YP_010000.1 46579192 2794764 complement(869189..869719) 1 NC_002937.3 identified by similarity to SP:P20601; match to protein family HMM PF00430; ATP synthase F0 subunit B 869719 2794764 DVU0779 Desulfovibrio vulgaris str. Hildenborough ATP synthase F0 subunit B YP_010000.1 869189 R 882 CDS YP_010001.1 46579193 2794765 complement(869792..870187) 1 NC_002937.3 identified by match to protein family HMM PF00430; ATP synthase F0 subunit B' 870187 2794765 DVU0780 Desulfovibrio vulgaris str. Hildenborough ATP synthase F0 subunit B' YP_010001.1 869792 R 882 CDS YP_010002.1 46579194 2794766 870276..870446 1 NC_002937.3 hypothetical protein 870446 2794766 DVU0781 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010002.1 870276 D 882 CDS YP_010003.1 46579195 2794767 870433..870552 1 NC_002937.3 hypothetical protein 870552 2794767 DVU0782 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010003.1 870433 D 882 CDS YP_010004.1 46579196 2794768 870569..870715 1 NC_002937.3 hypothetical protein 870715 2794768 DVU0783 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010004.1 870569 D 882 CDS YP_010005.1 46579197 2794769 complement(870985..871332) 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0780; match to protein family HMM PF04519; hypothetical protein 871332 2794769 DVU0784 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010005.1 870985 R 882 CDS YP_010006.1 46579198 2794810 complement(871370..872485) 1 NC_002937.3 identified by similarity to SP:P15035; match to protein family HMM PF01098; rod shape-determining protein RodA 872485 rodA 2794810 rodA Desulfovibrio vulgaris str. Hildenborough rod shape-determining protein RodA YP_010006.1 871370 R 882 CDS YP_010007.1 46579199 2794811 complement(872482..874269) 1 NC_002937.3 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 874269 2794811 DVU0786 Desulfovibrio vulgaris str. Hildenborough penicillin-binding protein YP_010007.1 872482 R 882 CDS YP_010008.1 46579200 2794812 complement(874253..874723) 1 NC_002937.3 hypothetical protein 874723 2794812 DVU0787 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010008.1 874253 R 882 CDS YP_010009.1 46579201 2794813 complement(874730..875644) 1 NC_002937.3 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 875644 mreC 2794813 mreC Desulfovibrio vulgaris str. Hildenborough rod shape-determining protein MreC YP_010009.1 874730 R 882 CDS YP_010010.1 46579202 2794814 complement(875646..876686) 1 NC_002937.3 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 876686 mreB-1 2794814 mreB-1 Desulfovibrio vulgaris str. Hildenborough rod shape-determining protein MreB YP_010010.1 875646 R 882 CDS YP_010011.1 46579203 2794815 876761..877816 1 NC_002937.3 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein 877816 2794815 DVU0790 Desulfovibrio vulgaris str. Hildenborough radical SAM family protein YP_010011.1 876761 D 882 CDS YP_010012.1 46579204 2794816 877891..878376 1 NC_002937.3 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated DNA-protein cysteine methyltransferase DNA binding subunit 878376 2794816 DVU0791 Desulfovibrio vulgaris str. Hildenborough methylated DNA-protein cysteine methyltransferase DNA binding subunit YP_010012.1 877891 D 882 CDS YP_010013.1 46579205 2794513 878370..878702 1 NC_002937.3 hypothetical protein 878702 2794513 DVU0792 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010013.1 878370 D 882 CDS YP_010014.1 46579206 2794515 complement(879217..879312) 1 NC_002937.3 hypothetical protein 879312 2794515 DVU0793 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010014.1 879217 R 882 CDS YP_010015.1 46579207 2794516 complement(879315..880079) 1 NC_002937.3 identified by similarity to SP:P29132; match to protein family HMM PF00106; enoyl-ACP reductase 880079 fabI 2794516 fabI Desulfovibrio vulgaris str. Hildenborough enoyl-ACP reductase YP_010015.1 879315 R 882 CDS YP_010016.1 46579208 2794517 complement(880193..881089) 1 NC_002937.3 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 881089 purC 2794517 purC Desulfovibrio vulgaris str. Hildenborough phosphoribosylaminoimidazole-succinocarboxamide synthase YP_010016.1 880193 R 882 CDS YP_010017.1 46579209 2794518 complement(881106..882416) 1 NC_002937.3 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 882416 hisD 2794518 hisD Desulfovibrio vulgaris str. Hildenborough histidinol dehydrogenase YP_010017.1 881106 R 882 CDS YP_010018.1 46579210 2794519 complement(882546..883976) 1 NC_002937.3 identified by similarity to GP:21899254; hypothetical protein 883976 2794519 DVU0797 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010018.1 882546 R 882 CDS YP_010019.1 46579211 2795093 complement(884036..884131) 1 NC_002937.3 hypothetical protein 884131 2795093 DVU0798 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010019.1 884036 R 882 CDS YP_010020.1 46579212 2795094 complement(884379..885779) 1 NC_002937.3 identified by similarity to GP:21899254; hypothetical protein 885779 2795094 DVU0799 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010020.1 884379 R 882 CDS YP_010021.1 46579213 2795095 complement(885776..885982) 1 NC_002937.3 hypothetical protein 885982 2795095 DVU0800 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010021.1 885776 R 882 CDS YP_010022.1 46579214 2795096 886202..888310 1 NC_002937.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 888310 uvrC 2795096 uvrC Desulfovibrio vulgaris str. Hildenborough excinuclease ABC subunit C YP_010022.1 886202 D 882 CDS YP_010023.1 46579215 2795097 888398..888514 1 NC_002937.3 hypothetical protein 888514 2795097 DVU0802 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010023.1 888398 D 882 CDS YP_010024.1 46579216 2795098 888532..889797 1 NC_002937.3 identified by similarity to GP:21107427; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 889797 2795098 DVU0803 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_010024.1 888532 D 882 CDS YP_010025.1 46579217 2795099 889782..891254 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 891254 2795099 DVU0804 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_010025.1 889782 D 882 CDS YP_010026.1 46579218 2795100 891422..891718 1 NC_002937.3 hypothetical protein 891718 2795100 DVU0805 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010026.1 891422 D 882 CDS YP_010027.1 46579219 2796529 891715..892125 1 NC_002937.3 identified by similarity to GP:3493638; match to protein family HMM PF00072; chemotaxis protein CheY 892125 2796529 DVU0806 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheY YP_010027.1 891715 D 882 CDS YP_010028.1 46579220 2796530 complement(892395..893435) 1 NC_002937.3 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 893435 trmU 2796530 trmU Desulfovibrio vulgaris str. Hildenborough tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_010028.1 892395 R 882 CDS YP_010029.1 46579221 2796531 complement(893450..894919) 1 NC_002937.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 894919 gatA 2796531 gatA Desulfovibrio vulgaris str. Hildenborough aspartyl/glutamyl-tRNA amidotransferase subunit A YP_010029.1 893450 R 882 CDS YP_010030.1 46579222 2796532 complement(894941..895225) 1 NC_002937.3 identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) amidotransferase subunit C 895225 gatC 2796532 gatC Desulfovibrio vulgaris str. Hildenborough glutamyl-tRNA(Gln) amidotransferase subunit C YP_010030.1 894941 R 882 CDS YP_010031.1 46579223 2796533 complement(895245..897305) 1 NC_002937.3 hypothetical protein 897305 2796533 DVU0810 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010031.1 895245 R 882 CDS YP_010032.1 46579224 2796534 complement(897365..899275) 1 NC_002937.3 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 899275 dnaK 2796534 dnaK Desulfovibrio vulgaris str. Hildenborough molecular chaperone DnaK YP_010032.1 897365 R 882 CDS YP_010033.1 46579225 2796535 complement(899494..900069) 1 NC_002937.3 identified by similarity to SP:P15874; match to protein family HMM PF01025; heat shock protein GrpE 900069 grpE 2796535 grpE Desulfovibrio vulgaris str. Hildenborough heat shock protein GrpE YP_010033.1 899494 R 882 CDS YP_010034.1 46579226 2795016 complement(900335..901402) 1 NC_002937.3 identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA 901402 hrcA 2795016 hrcA Desulfovibrio vulgaris str. Hildenborough heat-inducible transcription repressor HrcA YP_010034.1 900335 R 882 CDS YP_010035.2 304569687 2795017 complement(901535..902020) 1 NC_002937.3 identified by similarity to SP:P23480; match to protein family HMM PF00578; bacterioferritin comigratory protein 902020 2795017 DVU0814 Desulfovibrio vulgaris str. Hildenborough bacterioferritin comigratory protein YP_010035.2 901535 R 882 CDS YP_010036.1 46579228 2795018 complement(902205..904310) 1 NC_002937.3 identified by similarity to SP:P28249; match to protein family HMM PF05170; AsmA family protein 904310 2795018 DVU0815 Desulfovibrio vulgaris str. Hildenborough AsmA family protein YP_010036.1 902205 R 882 CDS YP_010037.1 46579229 2795019 904464..906095 1 NC_002937.3 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 906095 cobQ 2795019 cobQ Desulfovibrio vulgaris str. Hildenborough cobyric acid synthase YP_010037.1 904464 D 882 CDS YP_010038.1 46579230 2795020 complement(906158..906625) 1 NC_002937.3 hypothetical protein 906625 2795020 DVU0817 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010038.1 906158 R 882 CDS YP_010039.1 46579231 2795021 906828..908576 1 NC_002937.3 identified by similarity to GP:27359550; hypothetical protein 908576 2795021 DVU0818 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010039.1 906828 D 882 CDS YP_010040.1 46579232 2795022 complement(908890..909507) 1 NC_002937.3 identified by match to protein family HMM PF03358; FMN reductase, NADPH-dependent 909507 2795022 DVU0819 Desulfovibrio vulgaris str. Hildenborough FMN reductase, NADPH-dependent YP_010040.1 908890 R 882 CDS YP_010041.1 46579233 2795023 909804..909923 1 NC_002937.3 hypothetical protein 909923 2795023 DVU0820 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010041.1 909804 D 882 CDS YP_010042.1 46579234 2796167 complement(909911..910510) 1 NC_002937.3 identified by similarity to OMNI:NT01MC2073; hypothetical protein 910510 2796167 DVU0821 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010042.1 909911 R 882 CDS YP_010043.1 46579235 2796168 complement(910522..911178) 1 NC_002937.3 hypothetical protein 911178 2796168 DVU0822 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010043.1 910522 R 882 CDS YP_010044.1 46579236 2796170 complement(911585..912766) 1 NC_002937.3 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 912766 argJ 2796170 argJ Desulfovibrio vulgaris str. Hildenborough bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_010044.1 911585 R 882 CDS YP_010045.1 46579237 2796171 912765..912977 1 NC_002937.3 hypothetical protein 912977 2796171 DVU0824 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010045.1 912765 D 882 CDS YP_010046.1 46579238 2796172 complement(913045..915546) 1 NC_002937.3 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 915546 secA 2796172 secA Desulfovibrio vulgaris str. Hildenborough preprotein translocase subunit SecA YP_010046.1 913045 R 882 CDS YP_010047.1 46579239 2796173 complement(915709..917031) 1 NC_002937.3 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase, iron-sulfur subunit 917031 2796173 DVU0826 Desulfovibrio vulgaris str. Hildenborough glycolate oxidase, iron-sulfur subunit YP_010047.1 915709 R 882 CDS YP_010048.1 46579240 2796174 complement(917179..918594) 1 NC_002937.3 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 918594 2796174 DVU0827 Desulfovibrio vulgaris str. Hildenborough glycolate oxidase subunit GlcD YP_010048.1 917179 R 882 CDS YP_010049.1 46579241 2795492 complement(918623..919087) 1 NC_002937.3 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 919087 smpB 2795492 smpB Desulfovibrio vulgaris str. Hildenborough SsrA-binding protein YP_010049.1 918623 R 882 CDS YP_010050.1 46579242 2795493 complement(919099..920871) 1 NC_002937.3 identified by similarity to SP:P08838; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 920871 ptsI 2795493 ptsI Desulfovibrio vulgaris str. Hildenborough phosphoenolpyruvate-protein phosphotransferase YP_010050.1 919099 R 882 CDS YP_010051.1 46579243 2795494 complement(920882..921142) 1 NC_002937.3 identified by similarity to SP:P07006; match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 921142 ptsH 2795494 ptsH Desulfovibrio vulgaris str. Hildenborough phosphocarrier protein HPr YP_010051.1 920882 R 882 CDS YP_010052.1 46579244 2795495 complement(921203..921961) 1 NC_002937.3 identified by similarity to SP:P26382; PTS system transporter subunit IID 921961 2795495 DVU0831 Desulfovibrio vulgaris str. Hildenborough PTS system transporter subunit IID YP_010052.1 921203 R 882 CDS YP_010053.1 46579245 2795496 complement(922377..923204) 1 NC_002937.3 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase 923204 2795496 DVU0832 Desulfovibrio vulgaris str. Hildenborough tetrapyrrole methylase YP_010053.1 922377 R 882 CDS YP_010054.1 46579246 2795497 complement(923146..923550) 1 NC_002937.3 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 923550 2795497 DVU0833 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010054.1 923146 R 882 CDS YP_010055.1 46579247 2795498 complement(923544..924206) 1 NC_002937.3 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 924206 rnhB 2795498 rnhB Desulfovibrio vulgaris str. Hildenborough ribonuclease HII YP_010055.1 923544 R 882 CDS YP_010056.1 46579248 2795499 complement(924557..924904) 1 NC_002937.3 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 924904 rplS 2795499 rplS Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L19 YP_010056.1 924557 R 882 CDS YP_010057.1 46579249 2794848 complement(924958..926235) 1 NC_002937.3 identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase 926235 trmD 2794848 trmD Desulfovibrio vulgaris str. Hildenborough tRNA (guanine-N1)-methyltransferase YP_010057.1 924958 R 882 CDS YP_010058.1 46579250 2794849 complement(926250..926780) 1 NC_002937.3 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; 16S rRNA processing protein RimM 926780 rimM 2794849 rimM Desulfovibrio vulgaris str. Hildenborough 16S rRNA processing protein RimM YP_010058.1 926250 R 882 CDS YP_010059.1 46579251 2794850 complement(926804..927037) 1 NC_002937.3 identified by similarity to SP:Q8XJP5; hypothetical protein 927037 2794850 DVU0838 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010059.1 926804 R 882 CDS YP_010060.1 46579252 2794851 complement(927121..927360) 1 NC_002937.3 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 927360 rpsP 2794851 rpsP Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S16 YP_010060.1 927121 R 882 CDS YP_010061.1 46579253 2794852 complement(927439..928965) 1 NC_002937.3 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 928965 ffh 2794852 ffh Desulfovibrio vulgaris str. Hildenborough signal recognition particle protein YP_010061.1 927439 R 882 CDS YP_010062.1 46579254 2794853 complement(929194..930375) 1 NC_002937.3 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 930375 2794853 DVU0841 Desulfovibrio vulgaris str. Hildenborough aspartate aminotransferase YP_010062.1 929194 R 882 CDS YP_010063.1 46579255 2794854 complement(930484..930714) 1 NC_002937.3 hypothetical protein 930714 2794854 DVU0842 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010063.1 930484 R 882 CDS YP_010064.2 304569688 2795194 complement(930704..932302) 1 NC_002937.3 hypothetical protein 932302 2795194 DVU0843 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010064.2 930704 R 882 CDS YP_010066.1 46579258 2795196 complement(932782..933042) 1 NC_002937.3 hypothetical protein 933042 2795196 DVU0845 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010066.1 932782 R 882 CDS YP_010067.1 46579259 2795197 933076..933579 1 NC_002937.3 identified by similarity to GP:7109234; match to protein family HMM PF00037; match to protein family HMM TIGR02060; adenylylsulfate reductase subunit beta 933579 aprB 2795197 aprB Desulfovibrio vulgaris str. Hildenborough adenylylsulfate reductase subunit beta YP_010067.1 933076 D 882 CDS YP_010068.1 46579260 2795198 933621..935615 1 NC_002937.3 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 935615 aprA 2795198 aprA Desulfovibrio vulgaris str. Hildenborough adenylylsulfate reductase subunit alpha YP_010068.1 933621 D 882 CDS YP_010069.1 46579261 2795199 935761..936999 1 NC_002937.3 identified by similarity to GP:1890204; heterodisulfide reductase 936999 2795199 DVU0848 Desulfovibrio vulgaris str. Hildenborough heterodisulfide reductase YP_010069.1 935761 D 882 CDS YP_010070.1 46579262 2795200 937006..939282 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF02662; heterodisulfide reductase, iron-sulfur-binding subunit 939282 2795200 DVU0849 Desulfovibrio vulgaris str. Hildenborough heterodisulfide reductase, iron-sulfur-binding subunit YP_010070.1 937006 D 882 CDS YP_010071.1 46579263 2795201 939296..940450 1 NC_002937.3 identified by match to protein family HMM PF00037; heterodisulfide reductase, transmembrane subunit 940450 2795201 DVU0850 Desulfovibrio vulgaris str. Hildenborough heterodisulfide reductase, transmembrane subunit YP_010071.1 939296 D 882 CDS YP_010072.1 46579264 2794180 940540..941286 1 NC_002937.3 hypothetical protein 941286 2794180 DVU0851 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010072.1 940540 D 882 CDS YP_010073.1 46579265 2794181 941500..942297 1 NC_002937.3 extracellular solute-binding protein 942297 2794181 DVU0852 Desulfovibrio vulgaris str. Hildenborough extracellular solute-binding protein YP_010073.1 941500 D 882 CDS YP_010074.1 46579266 2794182 complement(942353..943624) 1 NC_002937.3 identified by similarity to OMNI:NTL02SC3149; match to protein family HMM PF01139; hypothetical protein 943624 2794182 DVU0853 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010074.1 942353 R 882 CDS YP_010075.1 46579267 2794183 complement(944038..944568) 1 NC_002937.3 identified by similarity to SP:Q52522; NirD protein 944568 2794183 DVU0854 Desulfovibrio vulgaris str. Hildenborough NirD protein YP_010075.1 944038 R 882 CDS YP_010076.1 46579268 2794184 complement(944578..945681) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 945681 2794184 DVU0855 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_010076.1 944578 R 882 CDS YP_010077.1 46579269 2794185 complement(945759..946751) 1 NC_002937.3 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 946751 hemB 2794185 hemB Desulfovibrio vulgaris str. Hildenborough delta-aminolevulinic acid dehydratase YP_010077.1 945759 R 882 CDS YP_010078.1 46579270 2794186 complement(946761..947942) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 947942 2794186 DVU0857 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_010078.1 946761 R 882 CDS YP_010079.1 46579271 2794187 complement(948258..948941) 1 NC_002937.3 lipoprotein 948941 2794187 DVU0858 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010079.1 948258 R 882 CDS YP_010080.1 46579272 2794188 complement(949376..950851) 1 NC_002937.3 hypothetical protein 950851 2794188 DVU0859 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010080.1 949376 R 882 CDS YP_003858607.1 304569760 9714856 complement(950733..952319) 1 NC_002937.3 hypothetical protein 952319 9714856 DVU4019 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858607.1 950733 R 882 CDS YP_010082.1 46579274 2796158 complement(952490..953608) 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 953608 2796158 DVU0861 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_010082.1 952490 R 882 CDS YP_010083.1 46579275 2796159 complement(953768..954673) 1 NC_002937.3 identified by similarity to SP:P26608; match to protein family HMM PF02561; match to protein family HMM TIGR00208; bifunctional flagellar protein FliS/hypothetical protein 954673 2796159 DVU0862 Desulfovibrio vulgaris str. Hildenborough bifunctional flagellar protein FliS/hypothetical protein YP_010083.1 953768 R 882 CDS YP_010084.1 46579276 2796160 complement(954684..956411) 1 NC_002937.3 identified by similarity to SP:P24216; match to protein family HMM PF02465; flagellar hook-associated protein 2 956411 2796160 DVU0863 Desulfovibrio vulgaris str. Hildenborough flagellar hook-associated protein 2 YP_010084.1 954684 R 882 CDS YP_010085.1 46579277 2796161 complement(956549..957334) 1 NC_002937.3 identified by match to protein family HMM PF00814; glycoprotease 957334 2796161 DVU0864 Desulfovibrio vulgaris str. Hildenborough glycoprotease YP_010085.1 956549 R 882 CDS YP_010086.1 46579278 2796162 complement(957331..958395) 1 NC_002937.3 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 958395 2796162 DVU0865 Desulfovibrio vulgaris str. Hildenborough membrane-associated zinc metalloprotease YP_010086.1 957331 R 882 CDS YP_010087.1 46579279 2796163 complement(958392..959618) 1 NC_002937.3 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 959618 dxr 2796163 dxr Desulfovibrio vulgaris str. Hildenborough 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_010087.1 958392 R 882 CDS YP_010088.1 46579280 2796164 complement(959615..961108) 1 NC_002937.3 identified by similarity to GP:6900962; match to protein family HMM PF00282; aromatic amino acid decarboxylase 961108 2796164 DVU0867 Desulfovibrio vulgaris str. Hildenborough aromatic amino acid decarboxylase YP_010088.1 959615 R 882 CDS YP_010089.1 46579281 2795167 complement(961117..961923) 1 NC_002937.3 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 961923 cdsA 2795167 cdsA Desulfovibrio vulgaris str. Hildenborough phosphatidate cytidylyltransferase YP_010089.1 961117 R 882 CDS YP_010090.1 46579282 2795168 complement(961920..962663) 1 NC_002937.3 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; UDP diphosphate synthase 962663 uppS 2795168 uppS Desulfovibrio vulgaris str. Hildenborough UDP diphosphate synthase YP_010090.1 961920 R 882 CDS YP_010091.1 46579283 2795169 complement(962781..963341) 1 NC_002937.3 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 963341 frr 2795169 frr Desulfovibrio vulgaris str. Hildenborough ribosome recycling factor YP_010091.1 962781 R 882 CDS YP_010092.1 46579284 2795170 complement(963345..964061) 1 NC_002937.3 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 964061 pyrH 2795170 pyrH Desulfovibrio vulgaris str. Hildenborough uridylate kinase YP_010092.1 963345 R 882 CDS YP_010093.1 46579285 2795171 complement(964110..964877) 1 NC_002937.3 identified by similarity to GP:19423800; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 964877 2795171 DVU0872 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_010093.1 964110 R 882 CDS YP_010094.1 46579286 2795172 complement(965140..966003) 1 NC_002937.3 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 966003 tsf 2795172 tsf Desulfovibrio vulgaris str. Hildenborough elongation factor Ts YP_010094.1 965140 R 882 CDS YP_010095.1 46579287 2795173 complement(966030..966794) 1 NC_002937.3 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 966794 rpsB 2795173 rpsB Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S2 YP_010095.1 966030 R 882 CDS YP_010096.1 46579288 2795174 complement(967141..967920) 1 NC_002937.3 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase 967920 2795174 DVU0875 Desulfovibrio vulgaris str. Hildenborough fumarylacetoacetate hydrolase YP_010096.1 967141 R 882 CDS YP_010097.1 46579289 2795130 complement(967948..969612) 1 NC_002937.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase 969612 2795130 DVU0876 Desulfovibrio vulgaris str. Hildenborough metallo-beta-lactamase YP_010097.1 967948 R 882 CDS YP_010098.1 46579290 2795131 complement(969620..969763) 1 NC_002937.3 hypothetical protein 969763 2795131 DVU0877 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010098.1 969620 R 882 CDS YP_010099.1 46579291 2795132 complement(970085..970441) 1 NC_002937.3 identified by similarity to SP:P18274; match to protein family HMM PF01258; dnaK suppressor protein 970441 2795132 DVU0878 Desulfovibrio vulgaris str. Hildenborough dnaK suppressor protein YP_010099.1 970085 R 882 CDS YP_010100.1 46579292 2795133 complement(970438..970575) 1 NC_002937.3 hypothetical protein 970575 2795133 DVU0879 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010100.1 970438 R 882 CDS YP_010101.1 46579293 2795134 complement(970692..971081) 1 NC_002937.3 hypothetical protein 971081 2795134 DVU0880 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010101.1 970692 R 882 CDS YP_010102.1 46579294 2795135 complement(971471..973537) 1 NC_002937.3 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 973537 fusA 2795135 fusA Desulfovibrio vulgaris str. Hildenborough elongation factor G YP_010102.1 971471 R 882 CDS YP_010103.1 46579295 2795136 973743..974207 1 NC_002937.3 hypothetical protein 974207 2795136 DVU0882 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010103.1 973743 D 882 CDS YP_010104.1 46579296 2795137 974481..974738 1 NC_002937.3 identified by match to protein family HMM PF00462; glutaredoxin 974738 2795137 DVU0883 Desulfovibrio vulgaris str. Hildenborough glutaredoxin YP_010104.1 974481 D 882 CDS YP_010105.1 46579297 2794196 974735..975079 1 NC_002937.3 identified by similarity to GP:2649026; hypothetical protein 975079 2794196 DVU0884 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010105.1 974735 D 882 CDS YP_010106.1 46579298 2794197 complement(975521..976309) 1 NC_002937.3 identified by match to protein family HMM PF04909; amidohydrolase 976309 2794197 DVU0885 Desulfovibrio vulgaris str. Hildenborough amidohydrolase YP_010106.1 975521 R 882 CDS YP_010107.1 46579299 2794198 complement(976360..976770) 1 NC_002937.3 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 976770 2794198 DVU0886 Desulfovibrio vulgaris str. Hildenborough thioesterase YP_010107.1 976360 R 882 CDS YP_010108.1 46579300 2794199 976825..978099 1 NC_002937.3 identified by similarity to OMNI:PP4971; match to protein family HMM PF03562; transglycosylase 978099 2794199 DVU0887 Desulfovibrio vulgaris str. Hildenborough transglycosylase YP_010108.1 976825 D 882 CDS YP_010109.1 46579301 2794200 978190..979902 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; response regulator 979902 2794200 DVU0888 Desulfovibrio vulgaris str. Hildenborough response regulator YP_010109.1 978190 D 882 CDS YP_010110.1 46579302 2794201 complement(979998..981137) 1 NC_002937.3 identified by match to protein family HMM PF01676; phosphonopyruvate decarboxylase-like protein 981137 2794201 DVU0889 Desulfovibrio vulgaris str. Hildenborough phosphonopyruvate decarboxylase-like protein YP_010110.1 979998 R 882 CDS YP_010111.1 46579303 2794202 complement(981134..982408) 1 NC_002937.3 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 982408 hom 2794202 hom Desulfovibrio vulgaris str. Hildenborough homoserine dehydrogenase YP_010111.1 981134 R 882 CDS YP_010112.1 46579304 2794203 complement(982410..983603) 1 NC_002937.3 identified by match to protein family HMM PF00155; class I/II aminotransferase 983603 2794203 DVU0891 Desulfovibrio vulgaris str. Hildenborough class I/II aminotransferase YP_010112.1 982410 R 882 CDS YP_010113.1 46579305 2794204 983727..984254 1 NC_002937.3 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 984254 aroL 2794204 aroL Desulfovibrio vulgaris str. Hildenborough shikimate kinase YP_010113.1 983727 D 882 CDS YP_010114.1 46579306 2794111 984283..984765 1 NC_002937.3 identified by match to protein family HMM PF00582; universal stress protein 984765 2794111 DVU0893 Desulfovibrio vulgaris str. Hildenborough universal stress protein YP_010114.1 984283 D 882 CDS YP_010115.1 46579307 2794112 984956..986020 1 NC_002937.3 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 986020 aroC 2794112 aroC Desulfovibrio vulgaris str. Hildenborough chorismate synthase YP_010115.1 984956 D 882 CDS YP_010116.1 46579308 2794113 986193..988421 1 NC_002937.3 identified by match to protein family HMM TIGR01448; recombinase D 988421 2794113 DVU0895 Desulfovibrio vulgaris str. Hildenborough recombinase D YP_010116.1 986193 D 882 CDS YP_010117.1 46579309 2794114 988431..989825 1 NC_002937.3 identified by match to protein family HMM PF00877; NLP/P60 family lipoprotein 989825 2794114 DVU0896 Desulfovibrio vulgaris str. Hildenborough NLP/P60 family lipoprotein YP_010117.1 988431 D 882 CDS YP_010118.1 46579310 2794115 989827..991203 1 NC_002937.3 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; RNA modification protein 991203 2794115 DVU0897 Desulfovibrio vulgaris str. Hildenborough RNA modification protein YP_010118.1 989827 D 882 CDS YP_010119.1 46579311 2794116 991288..992169 1 NC_002937.3 identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255; hypothetical protein 992169 2794116 DVU0898 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010119.1 991288 D 882 CDS YP_010120.1 46579312 2794117 992166..992426 1 NC_002937.3 identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025; hypothetical protein 992426 2794117 DVU0899 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010120.1 992166 D 882 CDS YP_010121.1 46579313 2794118 992426..993049 1 NC_002937.3 identified by similarity to SP:P24234; match to protein family HMM PF00625; guanylate kinase 993049 gmk 2794118 gmk Desulfovibrio vulgaris str. Hildenborough guanylate kinase YP_010121.1 992426 D 882 CDS YP_010122.1 46579314 2795411 993049..993756 1 NC_002937.3 identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 993756 pyrF 2795411 pyrF Desulfovibrio vulgaris str. Hildenborough orotidine 5'-phosphate decarboxylase YP_010122.1 993049 D 882 CDS YP_010123.1 46579315 2795412 993889..994746 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 994746 2795412 DVU0902 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010123.1 993889 D 882 CDS YP_010124.1 46579316 2795413 994751..995608 1 NC_002937.3 identified by similarity to GP:21107347; match to protein family HMM PF01966; HD domain-containing protein 995608 2795413 DVU0903 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_010124.1 994751 D 882 CDS YP_010125.1 46579317 2795414 995665..997380 1 NC_002937.3 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 997380 recJ 2795414 recJ Desulfovibrio vulgaris str. Hildenborough single-stranded-DNA-specific exonuclease RecJ YP_010125.1 995665 D 882 CDS YP_010126.1 46579318 2795415 complement(997479..998375) 1 NC_002937.3 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 998375 lipA 2795415 lipA Desulfovibrio vulgaris str. Hildenborough lipoyl synthase YP_010126.1 997479 R 882 CDS YP_010127.1 46579319 2795416 complement(998305..998961) 1 NC_002937.3 identified by similarity to SP:P30976; match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B 998961 lipB 2795416 lipB Desulfovibrio vulgaris str. Hildenborough lipoate-protein ligase B YP_010127.1 998305 R 882 CDS YP_010128.1 46579320 2795417 complement(998948..1001887) 1 NC_002937.3 identified by similarity to OMNI:NTL01BM0443; hypothetical protein 1001887 2795417 DVU0907 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010128.1 998948 R 882 CDS YP_010129.1 46579321 2795418 complement(1001899..1003530) 1 NC_002937.3 iron-sulfur cluster-binding protein 1003530 2795418 DVU0908 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_010129.1 1001899 R 882 CDS YP_010130.1 46579322 2794662 1003696..1004091 1 NC_002937.3 hypothetical protein 1004091 2794662 DVU0909 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010130.1 1003696 D 882 CDS YP_010131.1 46579323 2794663 1004227..1005207 1 NC_002937.3 identified by similarity to SP:P06974; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 1005207 fliM 2794663 fliM Desulfovibrio vulgaris str. Hildenborough flagellar motor switch protein FliM YP_010131.1 1004227 D 882 CDS YP_010132.1 46579324 2794664 complement(1005807..1006700) 1 NC_002937.3 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1006700 truA 2794664 truA Desulfovibrio vulgaris str. Hildenborough tRNA pseudouridine synthase A YP_010132.1 1005807 R 882 CDS YP_010133.1 46579325 2794665 complement(1006702..1007286) 1 NC_002937.3 hypothetical protein 1007286 2794665 DVU0912 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010133.1 1006702 R 882 CDS YP_010134.1 46579326 2794666 complement(1007363..1007800) 1 NC_002937.3 identified by similarity to OMNI:TM0512; hypothetical protein 1007800 2794666 DVU0913 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010134.1 1007363 R 882 CDS YP_010135.1 46579327 2794667 complement(1007871..1008608) 1 NC_002937.3 identified by similarity to SP:P36561; match to protein family HMM PF02654; cobalamin-5-phosphate synthase 1008608 cobS 2794667 cobS Desulfovibrio vulgaris str. Hildenborough cobalamin-5-phosphate synthase YP_010135.1 1007871 R 882 CDS YP_010136.1 46579328 2794668 complement(1008987..1009775) 1 NC_002937.3 identified by similarity to OMNI:CT1550; match to protein family HMM PF01887; hypothetical protein 1009775 2794668 DVU0915 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010136.1 1008987 R 882 CDS YP_010137.1 46579329 2794669 complement(1009809..1010453) 1 NC_002937.3 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1010453 2794669 DVU0916 Desulfovibrio vulgaris str. Hildenborough redox-sensing transcriptional repressor Rex YP_010137.1 1009809 R 882 CDS YP_010138.1 46579330 2794670 complement(1010558..1010806) 1 NC_002937.3 identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase F0 subunit C 1010806 atpE 2794670 atpE Desulfovibrio vulgaris str. Hildenborough ATP synthase F0 subunit C YP_010138.1 1010558 R 882 CDS YP_010139.1 46579331 2794254 complement(1010942..1011643) 1 NC_002937.3 identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131; ATP synthase F0 subunit A 1011643 atpB 2794254 atpB Desulfovibrio vulgaris str. Hildenborough ATP synthase F0 subunit A YP_010139.1 1010942 R 882 CDS YP_010140.1 46579332 2794255 complement(1011648..1012082) 1 NC_002937.3 hypothetical protein 1012082 2794255 DVU0919 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010140.1 1011648 R 882 CDS YP_010141.1 46579333 2794256 complement(1012051..1012455) 1 NC_002937.3 identified by similarity to SP:P15011; ATP synthase I 1012455 atpI 2794256 atpI Desulfovibrio vulgaris str. Hildenborough ATP synthase I YP_010141.1 1012051 R 882 CDS YP_010142.1 46579334 2794257 1012517..1012984 1 NC_002937.3 identified by similarity to GP:435265; 5-nitroimidazole antibiotic resistance protein 1012984 2794257 DVU0921 Desulfovibrio vulgaris str. Hildenborough 5-nitroimidazole antibiotic resistance protein YP_010142.1 1012517 D 882 CDS YP_010143.1 46579335 2794258 complement(1013027..1013584) 1 NC_002937.3 cytochrome c family protein 1013584 2794258 DVU0922 Desulfovibrio vulgaris str. Hildenborough cytochrome c family protein YP_010143.1 1013027 R 882 CDS YP_010144.1 46579336 2794259 complement(1014066..1014464) 1 NC_002937.3 identified by match to protein family HMM PF01042; L-PSP family endoribonuclease 1014464 2794259 DVU0923 Desulfovibrio vulgaris str. Hildenborough L-PSP family endoribonuclease YP_010144.1 1014066 R 882 CDS YP_010145.1 46579337 2794260 complement(1014520..1015926) 1 NC_002937.3 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 1015926 rumA 2794260 rumA Desulfovibrio vulgaris str. Hildenborough 23S rRNA (uracil-5-)-methyltransferase RumA YP_010145.1 1014520 R 882 CDS YP_010146.1 46579338 2794261 complement(1016369..1017277) 1 NC_002937.3 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 1017277 rfbA 2794261 rfbA Desulfovibrio vulgaris str. Hildenborough glucose-1-phosphate thymidylyltransferase YP_010146.1 1016369 R 882 CDS YP_010147.1 46579339 2794626 complement(1017547..1017738) 1 NC_002937.3 hypothetical protein 1017738 2794626 DVU0926 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010147.1 1017547 R 882 CDS YP_010148.1 46579340 2794627 1017855..1018163 1 NC_002937.3 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 1018163 rplU 2794627 rplU Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L21 YP_010148.1 1017855 D 882 CDS YP_010149.1 46579341 2794628 1018184..1018447 1 NC_002937.3 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1018447 rpmA 2794628 rpmA Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L27 YP_010149.1 1018184 D 882 CDS YP_010150.1 46579342 2794629 1018596..1019696 1 NC_002937.3 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1019696 obgE 2794629 obgE Desulfovibrio vulgaris str. Hildenborough GTPase ObgE YP_010150.1 1018596 D 882 CDS YP_010151.1 46579343 2794630 1019714..1020856 1 NC_002937.3 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1020856 proB 2794630 proB Desulfovibrio vulgaris str. Hildenborough gamma-glutamyl kinase YP_010151.1 1019714 D 882 CDS YP_010152.1 46579344 2794631 1020935..1021741 1 NC_002937.3 identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 1021741 thiD 2794631 thiD Desulfovibrio vulgaris str. Hildenborough phosphomethylpyrimidine kinase YP_010152.1 1020935 D 882 CDS YP_010153.1 46579345 2794632 1022374..1023549 1 NC_002937.3 identified by match to protein family HMM PF02518; sensor histidine kinase 1023549 2794632 DVU0932 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_010153.1 1022374 D 882 CDS YP_010154.1 46579346 2794633 1023539..1024783 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM TIGR00229; response regulator 1024783 2794633 DVU0933 Desulfovibrio vulgaris str. Hildenborough response regulator YP_010154.1 1023539 D 882 CDS YP_010155.1 46579347 2794608 1024764..1025024 1 NC_002937.3 hypothetical protein 1025024 2794608 DVU0934 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010155.1 1024764 D 882 CDS YP_010156.1 46579348 2794609 1025021..1027525 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1027525 2794609 DVU0935 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_010156.1 1025021 D 882 CDS YP_010157.1 46579349 2794610 1028071..1028445 1 NC_002937.3 hypothetical protein 1028445 2794610 DVU0936 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010157.1 1028071 D 882 CDS YP_010158.1 46579350 2794611 1028459..1028845 1 NC_002937.3 hypothetical protein 1028845 2794611 DVU0937 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010158.1 1028459 D 882 CDS YP_010159.1 46579351 2794612 1028909..1029277 1 NC_002937.3 isoamylase N-terminal domain-containing protein 1029277 2794612 DVU0938 Desulfovibrio vulgaris str. Hildenborough isoamylase N-terminal domain-containing protein YP_010159.1 1028909 D 882 CDS YP_010160.1 46579352 2794613 1029677..1030426 1 NC_002937.3 identified by similarity to GP:6978033; hypothetical protein 1030426 2794613 DVU0939 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010160.1 1029677 D 882 CDS YP_010161.1 46579353 2794614 1030439..1031170 1 NC_002937.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1031170 2794614 DVU0940 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_010161.1 1030439 D 882 CDS YP_010162.1 46579354 2794615 1031522..1034416 1 NC_002937.3 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1034416 2794615 DVU0941 Desulfovibrio vulgaris str. Hildenborough M16 family peptidase YP_010162.1 1031522 D 882 CDS YP_010163.1 46579355 2794616 1034493..1034927 1 NC_002937.3 identified by match to protein family HMM PF01475; Fur family transcriptional regulator 1034927 2794616 DVU0942 Desulfovibrio vulgaris str. Hildenborough Fur family transcriptional regulator YP_010163.1 1034493 D 882 CDS YP_010164.1 46579356 2794587 1035361..1037160 1 NC_002937.3 hypothetical protein 1037160 2794587 DVU0943 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010164.1 1035361 D 882 CDS YP_010165.1 46579357 2794588 1037214..1037471 1 NC_002937.3 hypothetical protein 1037471 2794588 DVU0944 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010165.1 1037214 D 882 CDS YP_010166.1 46579358 2794589 1037557..1039989 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1039989 2794589 DVU0945 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_010166.1 1037557 D 882 CDS YP_010167.1 46579359 2794590 1039992..1041422 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 1041422 2794590 DVU0946 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_010167.1 1039992 D 882 CDS YP_010168.1 46579360 2794591 complement(1041478..1042383) 1 NC_002937.3 identified by match to protein family HMM PF00892; hypothetical protein 1042383 2794591 DVU0947 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010168.1 1041478 R 882 CDS YP_010169.1 46579361 2794592 complement(1042559..1042987) 1 NC_002937.3 hypothetical protein 1042987 2794592 DVU0948 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010169.1 1042559 R 882 CDS YP_010170.1 46579362 2794593 complement(1043035..1043796) 1 NC_002937.3 identified by similarity to OMNI:NMB1475; hypothetical protein 1043796 2794593 DVU0949 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010170.1 1043035 R 882 CDS YP_010171.1 46579363 2794594 1043812..1043928 1 NC_002937.3 hypothetical protein 1043928 2794594 DVU0950 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010171.1 1043812 D 882 CDS YP_010172.1 46579364 2794595 1043957..1045294 1 NC_002937.3 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 1045294 2794595 DVU0951 Desulfovibrio vulgaris str. Hildenborough molybdopterin biosynthesis MoeA protein YP_010172.1 1043957 D 882 CDS YP_010173.1 46579365 2795148 1045296..1046168 1 NC_002937.3 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein 1046168 2795148 DVU0952 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010173.1 1045296 D 882 CDS YP_010174.1 46579366 2795149 1046362..1047558 1 NC_002937.3 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1047558 tyrS 2795149 tyrS Desulfovibrio vulgaris str. Hildenborough tyrosyl-tRNA synthetase YP_010174.1 1046362 D 882 CDS YP_010175.1 46579367 2795150 complement(1047731..1050025) 1 NC_002937.3 identified by similarity to SP:P31554; organic solvent tolerance protein 1050025 2795150 DVU0954 Desulfovibrio vulgaris str. Hildenborough organic solvent tolerance protein YP_010175.1 1047731 R 882 CDS YP_010176.1 46579368 2795151 1050212..1051342 1 NC_002937.3 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 1051342 alr 2795151 alr Desulfovibrio vulgaris str. Hildenborough alanine racemase YP_010176.1 1050212 D 882 CDS YP_010177.1 46579369 2795152 1051480..1051785 1 NC_002937.3 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1051785 rpsF 2795152 rpsF Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S6 YP_010177.1 1051480 D 882 CDS YP_010178.1 46579370 2795153 1051786..1052049 1 NC_002937.3 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1052049 rpsR 2795153 rpsR Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S18 YP_010178.1 1051786 D 882 CDS YP_010179.1 46579371 2795154 1052062..1052565 1 NC_002937.3 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1052565 rplI 2795154 rplI Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L9 YP_010179.1 1052062 D 882 CDS YP_010180.1 46579372 2795155 1052516..1053997 1 NC_002937.3 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 1053997 dnaB 2795155 dnaB Desulfovibrio vulgaris str. Hildenborough replicative DNA helicase YP_010180.1 1052516 D 882 CDS YP_010181.1 46579373 2795156 complement(1054031..1054219) 1 NC_002937.3 hypothetical protein 1054219 2795156 DVU0960 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010181.1 1054031 R 882 CDS YP_010182.1 46579374 2794464 complement(1054399..1058463) 1 NC_002937.3 identified by similarity to OMNI:NTL01RS0896; hypothetical protein 1058463 2794464 DVU0961 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010182.1 1054399 R 882 CDS YP_010183.1 46579375 2794465 complement(1058460..1058576) 1 NC_002937.3 hypothetical protein 1058576 2794465 DVU0962 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010183.1 1058460 R 882 CDS YP_010184.1 46579376 2794466 complement(1058925..1059422) 1 NC_002937.3 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1059422 2794466 DVU0963 Desulfovibrio vulgaris str. Hildenborough 7-cyano-7-deazaguanine reductase YP_010184.1 1058925 R 882 CDS YP_010185.1 46579377 2794467 1059674..1062667 1 NC_002937.3 identified by match to protein family HMM PF00208; Glu/Leu/Phe/Val dehydrogenase 1062667 2794467 DVU0964 Desulfovibrio vulgaris str. Hildenborough Glu/Leu/Phe/Val dehydrogenase YP_010185.1 1059674 D 882 CDS YP_010186.1 46579378 2794468 1062907..1063083 1 NC_002937.3 hypothetical protein 1063083 2794468 DVU0965 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010186.1 1062907 D 882 CDS YP_010187.1 46579379 2794469 1063178..1063996 1 NC_002937.3 identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein 1063996 2794469 DVU0966 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter periplasmic amino acid-binding protein YP_010187.1 1063178 D 882 CDS YP_010188.1 46579380 2794470 1064266..1065279 1 NC_002937.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1065279 2794470 DVU0967 Desulfovibrio vulgaris str. Hildenborough His/Glu/Gln/Arg/opine ABC transporter permease YP_010188.1 1064266 D 882 CDS YP_010189.1 46579381 2796144 1065276..1066016 1 NC_002937.3 identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 1066016 2796144 DVU0968 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter ATP-binding protein YP_010189.1 1065276 D 882 CDS YP_010190.1 46579382 2794471 1066264..1067010 1 NC_002937.3 identified by similarity to OMNI:CC0456; match to protein family HMM PF01810; amino acid transporter LysE 1067010 2794471 DVU0969 Desulfovibrio vulgaris str. Hildenborough amino acid transporter LysE YP_010190.1 1066264 D 882 CDS YP_010191.1 46579383 2794472 1067013..1067552 1 NC_002937.3 lipoprotein 1067552 2794472 DVU0970 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010191.1 1067013 D 882 CDS YP_010192.2 304569689 2795103 1067552..1068331 1 NC_002937.3 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein 1068331 2795103 DVU0971 Desulfovibrio vulgaris str. Hildenborough molybdenum cofactor biosynthesis protein YP_010192.2 1067552 D 882 CDS YP_010193.1 46579385 2795104 1068370..1069635 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 1069635 2795104 DVU0972 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_010193.1 1068370 D 882 CDS YP_010194.1 46579386 2795105 1069632..1070501 1 NC_002937.3 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; 4-hydroxybenzoate octaprenyltransferase 1070501 2795105 DVU0973 Desulfovibrio vulgaris str. Hildenborough 4-hydroxybenzoate octaprenyltransferase YP_010194.1 1069632 D 882 CDS YP_010195.1 46579387 2795106 1070600..1070938 1 NC_002937.3 hypothetical protein 1070938 2795106 DVU0974 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010195.1 1070600 D 882 CDS YP_010196.1 46579388 2795107 1070971..1071531 1 NC_002937.3 identified by similarity to SP:P26650; match to protein family HMM PF04751; hypothetical protein 1071531 2795107 DVU0975 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010196.1 1070971 D 882 CDS YP_010197.1 46579389 2795108 complement(1071674..1072837) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 1072837 2795108 DVU0976 Desulfovibrio vulgaris str. Hildenborough response regulator YP_010197.1 1071674 R 882 CDS YP_010198.1 46579390 2795109 1072913..1073062 1 NC_002937.3 hypothetical protein 1073062 2795109 DVU0977 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010198.1 1072913 D 882 CDS YP_010199.1 46579391 2795110 1073542..1074396 1 NC_002937.3 identified by similarity to GP:14330288; ABC transporter periplasmic substrate-binding protein 1074396 2795110 DVU0978 Desulfovibrio vulgaris str. Hildenborough ABC transporter periplasmic substrate-binding protein YP_010199.1 1073542 D 882 CDS YP_010200.1 46579392 2795111 1074581..1075645 1 NC_002937.3 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 1075645 2795111 DVU0979 Desulfovibrio vulgaris str. Hildenborough dihydroxyacetone kinase subunit DhaK YP_010200.1 1074581 D 882 CDS YP_010201.1 46579393 2793322 1075824..1076456 1 NC_002937.3 identified by match to protein family HMM PF02734; DAK2 domain-containing protein 1076456 2793322 DVU0980 Desulfovibrio vulgaris str. Hildenborough DAK2 domain-containing protein YP_010201.1 1075824 D 882 CDS YP_010202.1 46579394 2793323 1076460..1079024 1 NC_002937.3 identified by similarity to SP:P23388; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; multiphosphoryl transfer protein 1079024 2793323 DVU0981 Desulfovibrio vulgaris str. Hildenborough multiphosphoryl transfer protein YP_010202.1 1076460 D 882 CDS YP_010203.1 46579395 2793324 complement(1079062..1079721) 1 NC_002937.3 identified by match to protein family HMM PF02231; match to protein family HMM PF02811; hypothetical protein 1079721 2793324 DVU0982 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010203.1 1079062 R 882 CDS YP_010204.1 46579396 2793325 complement(1079723..1080268) 1 NC_002937.3 identified by similarity to SP:Q50604; match to protein family HMM PF02577; hypothetical protein 1080268 2793325 DVU0983 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010204.1 1079723 R 882 CDS YP_010205.1 46579397 2793326 complement(1080262..1081611) 1 NC_002937.3 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1081611 miaB 2793326 miaB Desulfovibrio vulgaris str. Hildenborough (dimethylallyl)adenosine tRNA methylthiotransferase YP_010205.1 1080262 R 882 CDS YP_010206.1 46579398 2793327 1081606..1081863 1 NC_002937.3 hypothetical protein 1081863 2793327 DVU0985 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010206.1 1081606 D 882 CDS YP_010207.1 46579399 2793328 complement(1082046..1082165) 1 NC_002937.3 hypothetical protein 1082165 2793328 DVU0986 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010207.1 1082046 R 882 CDS YP_010208.1 46579400 2793329 1082181..1082384 1 NC_002937.3 identified by match to protein family HMM PF00403; heavy metal-binding domain-containing protein 1082384 2793329 DVU0987 Desulfovibrio vulgaris str. Hildenborough heavy metal-binding domain-containing protein YP_010208.1 1082181 D 882 CDS YP_010209.1 46579401 2793330 complement(1082842..1083768) 1 NC_002937.3 identified by match to protein family HMM PF00294; carbohydrate kinase 1083768 2793330 DVU0988 Desulfovibrio vulgaris str. Hildenborough carbohydrate kinase YP_010209.1 1082842 R 882 CDS YP_010210.1 46579402 2794146 complement(1083778..1084218) 1 NC_002937.3 identified by similarity to SP:P36654; match to protein family HMM PF03091; periplasmic divalent cation tolerance protein cutA 1084218 2794146 DVU0989 Desulfovibrio vulgaris str. Hildenborough periplasmic divalent cation tolerance protein cutA YP_010210.1 1083778 R 882 CDS YP_010211.1 46579403 2794147 1084333..1085190 1 NC_002937.3 identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 1085190 2794147 DVU0990 Desulfovibrio vulgaris str. Hildenborough endonuclease III YP_010211.1 1084333 D 882 CDS YP_010212.1 46579404 2794148 1085187..1086005 1 NC_002937.3 identified by similarity to OMNI:NTL01MM1967; hypothetical protein 1086005 2794148 DVU0991 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010212.1 1085187 D 882 CDS YP_010213.1 46579405 2794149 1086193..1087155 1 NC_002937.3 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 1087155 cheV-3 2794149 cheV-3 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheV YP_010213.1 1086193 D 882 CDS YP_010214.1 46579406 2794150 1087234..1087956 1 NC_002937.3 hypothetical protein 1087956 2794150 DVU0993 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010214.1 1087234 D 882 CDS YP_010215.1 46579407 2794151 complement(1088229..1088408) 1 NC_002937.3 hypothetical protein 1088408 2794151 DVU0994 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010215.1 1088229 R 882 CDS YP_010216.1 46579408 2794152 1088648..1089235 1 NC_002937.3 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; ThiJ/PfpI family protein 1089235 2794152 DVU0995 Desulfovibrio vulgaris str. Hildenborough ThiJ/PfpI family protein YP_010216.1 1088648 D 882 CDS YP_010217.1 46579409 2794153 complement(1089448..1090323) 1 NC_002937.3 hypothetical protein 1090323 2794153 DVU0996 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010217.1 1089448 R 882 CDS YP_010218.1 46579410 2794154 1090724..1091599 1 NC_002937.3 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 1091599 metF 2794154 metF Desulfovibrio vulgaris str. Hildenborough 5,10-methylenetetrahydrofolate reductase YP_010218.1 1090724 D 882 CDS YP_010219.1 46579411 2795112 1092123..1093178 1 NC_002937.3 identified by match to protein family HMM PF01075; heptosyltransferase 1093178 2795112 DVU0998 Desulfovibrio vulgaris str. Hildenborough heptosyltransferase YP_010219.1 1092123 D 882 CDS YP_010220.1 46579412 2795115 1093789..1095948 1 NC_002937.3 identified by similarity to SP:P36655; match to protein family HMM PF02683; thio:disulfide interchange protein 1095948 2795115 DVU0999 Desulfovibrio vulgaris str. Hildenborough thio:disulfide interchange protein YP_010220.1 1093789 D 882 CDS YP_010221.1 46579413 2795116 complement(1096059..1097282) 1 NC_002937.3 identified by match to protein family HMM PF00557; M24 family peptidase 1097282 2795116 DVU1000 Desulfovibrio vulgaris str. Hildenborough M24 family peptidase YP_010221.1 1096059 R 882 CDS YP_010222.1 46579414 2795117 1097428..1097832 1 NC_002937.3 identified by match to protein family HMM PF02629; coenzyme A binding protein 1097832 2795117 DVU1001 Desulfovibrio vulgaris str. Hildenborough coenzyme A binding protein YP_010222.1 1097428 D 882 CDS YP_010223.1 46579415 2795118 1097829..1098284 1 NC_002937.3 identified by match to protein family HMM PF03692; hypothetical protein 1098284 2795118 DVU1002 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010223.1 1097829 D 882 CDS YP_010224.1 46579416 2795119 1098299..1099285 1 NC_002937.3 identified by match to protein family HMM PF00226; dnaJ domain-containing protein 1099285 2795119 DVU1003 Desulfovibrio vulgaris str. Hildenborough dnaJ domain-containing protein YP_010224.1 1098299 D 882 CDS YP_010225.1 46579417 2794642 complement(1099427..1100311) 1 NC_002937.3 identified by similarity to OMNI:NTL01PH00071; match to protein family HMM PF00892; hypothetical protein 1100311 2794642 DVU1004 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010225.1 1099427 R 882 CDS YP_010226.1 46579418 2794643 1100542..1101762 1 NC_002937.3 hypothetical protein 1101762 2794643 DVU1005 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010226.1 1100542 D 882 CDS YP_010227.1 46579419 2794644 complement(1102246..1102695) 1 NC_002937.3 hypothetical protein 1102695 2794644 DVU1006 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010227.1 1102246 R 882 CDS YP_010228.1 46579420 2794645 1102911..1103447 1 NC_002937.3 identified by similarity to SP:P29931; match to protein family HMM PF02283; cobinamide kinase/cobinamide phosphate guanylyltransferase 1103447 cobU 2794645 cobU Desulfovibrio vulgaris str. Hildenborough cobinamide kinase/cobinamide phosphate guanylyltransferase YP_010228.1 1102911 D 882 CDS YP_010229.1 46579421 2794646 1103500..1104303 1 NC_002937.3 hypothetical protein 1104303 2794646 DVU1008 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010229.1 1103500 D 882 CDS YP_010230.1 46579422 2794647 complement(1104647..1105261) 1 NC_002937.3 hypothetical protein 1105261 2794647 DVU1009 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010230.1 1104647 R 882 CDS YP_010231.1 46579423 2794648 1105375..1105578 1 NC_002937.3 hypothetical protein 1105578 2794648 DVU1010 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010231.1 1105375 D 882 CDS YP_010232.1 46579424 2794649 complement(1105878..1105976) 1 NC_002937.3 hypothetical protein 1105976 2794649 DVU1011 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010232.1 1105878 R 882 CDS YP_010233.1 46579425 2794650 complement(1106001..1115117) 1 NC_002937.3 identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612; hemolysin-type calcium-binding repeat-containing protein 1115117 2794650 DVU1012 Desulfovibrio vulgaris str. Hildenborough hemolysin-type calcium-binding repeat-containing protein YP_010233.1 1106001 R 882 CDS YP_010234.1 46579426 2793736 complement(1115282..1116652) 1 NC_002937.3 identified by similarity to GP:150976; match to protein family HMM PF02321; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein 1116652 2793736 DVU1013 Desulfovibrio vulgaris str. Hildenborough TolC family type I secretion outer membrane protein YP_010234.1 1115282 R 882 CDS YP_010235.1 46579427 2793737 1116656..1116751 1 NC_002937.3 hypothetical protein 1116751 2793737 DVU1014 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010235.1 1116656 D 882 CDS YP_010236.1 46579428 2793738 1116735..1116881 1 NC_002937.3 hypothetical protein 1116881 2793738 DVU1015 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010236.1 1116735 D 882 CDS YP_010237.1 46579429 2793739 complement(1116913..1117077) 1 NC_002937.3 hypothetical protein 1117077 2793739 DVU1016 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010237.1 1116913 R 882 CDS YP_010238.1 46579430 2793740 1117054..1119384 1 NC_002937.3 identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1119384 2793740 DVU1017 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein/permease YP_010238.1 1117054 D 882 CDS YP_010239.2 304569690 2793741 1119387..1120733 1 NC_002937.3 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; HlyD family type I secretion membrane fusion protein 1120733 2793741 DVU1018 Desulfovibrio vulgaris str. Hildenborough HlyD family type I secretion membrane fusion protein YP_010239.2 1119387 D 882 CDS YP_010240.1 46579432 2793742 1120733..1121953 1 NC_002937.3 identified by similarity to OMNI:VCA1081; hypothetical protein 1121953 2793742 DVU1019 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010240.1 1120733 D 882 CDS YP_010241.1 46579433 2793743 1121956..1124061 1 NC_002937.3 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00229; HD domain/sensory box protein 1124061 2793743 DVU1020 Desulfovibrio vulgaris str. Hildenborough HD domain/sensory box protein YP_010241.1 1121956 D 882 CDS YP_010242.1 46579434 2793744 complement(1124280..1125446) 1 NC_002937.3 identified by similarity to OMNI:NTL02MA4295; match to protein family HMM PF01458; hypothetical protein 1125446 2793744 DVU1021 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010242.1 1124280 R 882 CDS YP_010243.1 46579435 2793745 complement(1125448..1126224) 1 NC_002937.3 identified by similarity to OMNI:NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978; SUF system FeS assembly ATPase SufC 1126224 2793745 DVU1022 Desulfovibrio vulgaris str. Hildenborough SUF system FeS assembly ATPase SufC YP_010243.1 1125448 R 882 CDS YP_010244.1 46579436 2794520 complement(1126725..1127465) 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0367; match to protein family HMM PF01694; rhomboid family protein 1127465 2794520 DVU1023 Desulfovibrio vulgaris str. Hildenborough rhomboid family protein YP_010244.1 1126725 R 882 CDS YP_010245.1 46579437 2794521 complement(1127477..1129102) 1 NC_002937.3 identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01121; match to protein family HMM PF01479; match to protein family HMM TIGR00005; match to protein family HMM TIGR00152; ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase 1129102 rluD/coaE 2794521 rluD/coaE Desulfovibrio vulgaris str. Hildenborough ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase YP_010245.1 1127477 R 882 CDS YP_010246.1 46579438 2794522 1129212..1129838 1 NC_002937.3 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1129838 upp 2794522 upp Desulfovibrio vulgaris str. Hildenborough uracil phosphoribosyltransferase YP_010246.1 1129212 D 882 CDS YP_010247.1 46579439 2794523 1130018..1131277 1 NC_002937.3 identified by similarity to SP:P39766; match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1131277 uraA 2794523 uraA Desulfovibrio vulgaris str. Hildenborough uracil permease YP_010247.1 1130018 D 882 CDS YP_010248.1 46579440 2794524 1131511..1132482 1 NC_002937.3 hypothetical protein 1132482 2794524 DVU1027 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010248.1 1131511 D 882 CDS YP_010249.1 46579441 2794525 complement(1132719..1133417) 1 NC_002937.3 identified by similarity to SP:P23863; match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 1133417 cmk 2794525 cmk Desulfovibrio vulgaris str. Hildenborough cytidylate kinase YP_010249.1 1132719 R 882 CDS YP_010250.1 46579442 2794526 complement(1133410..1134531) 1 NC_002937.3 identified by similarity to SP:P17731; match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 1134531 hisC 2794526 hisC Desulfovibrio vulgaris str. Hildenborough histidinol-phosphate aminotransferase YP_010250.1 1133410 R 882 CDS YP_010251.1 46579443 2794527 complement(1134798..1135241) 1 NC_002937.3 identified by match to protein family HMM PF00582; universal stress protein 1135241 2794527 DVU1030 Desulfovibrio vulgaris str. Hildenborough universal stress protein YP_010251.1 1134798 R 882 CDS YP_010252.1 46579444 2796244 1135240..1135416 1 NC_002937.3 hypothetical protein 1135416 2796244 DVU1031 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010252.1 1135240 D 882 CDS YP_010253.1 46579445 2796245 1135502..1136011 1 NC_002937.3 hypothetical protein 1136011 2796245 DVU1032 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010253.1 1135502 D 882 CDS YP_010254.1 46579446 2796246 complement(1136444..1136938) 1 NC_002937.3 identified by similarity to SP:P46323; match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible protein CinA protein, truncation 1136938 2796246 DVU1033 Desulfovibrio vulgaris str. Hildenborough competence/damage-inducible protein CinA protein, truncation YP_010254.1 1136444 R 882 CDS YP_010255.1 46579447 2796247 1137146..1137931 1 NC_002937.3 hypothetical protein 1137931 2796247 DVU1034 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010255.1 1137146 D 882 CDS YP_010256.2 304569691 2796248 1137931..1138995 1 NC_002937.3 glucokinase 1138995 2796248 DVU1035 Desulfovibrio vulgaris str. Hildenborough glucokinase YP_010256.2 1137931 D 882 CDS YP_010257.1 46579449 2796249 1138992..1139876 1 NC_002937.3 hypothetical protein 1139876 2796249 DVU1036 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010257.1 1138992 D 882 CDS YP_010258.1 46579450 2796250 1139907..1141349 1 NC_002937.3 identified by similarity to SP:P16171; match to protein family HMM PF00070; match to protein family HMM PF02852; mercuric reductase 1141349 2796250 DVU1037 Desulfovibrio vulgaris str. Hildenborough mercuric reductase YP_010258.1 1139907 D 882 CDS YP_010259.1 46579451 2796251 complement(1141452..1142201) 1 NC_002937.3 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1142201 hisA 2796251 hisA Desulfovibrio vulgaris str. Hildenborough 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_010259.1 1141452 R 882 CDS YP_010260.1 46579452 2796252 complement(1142198..1142839) 1 NC_002937.3 lipoprotein 1142839 2796252 DVU1039 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010260.1 1142198 R 882 CDS YP_010261.2 304569692 2796253 complement(1142839..1143447) 1 NC_002937.3 identified by similarity to SP:O34683; match to protein family HMM PF00475; imidazoleglycerol-phosphate dehydratase 1143447 hisB 2796253 hisB Desulfovibrio vulgaris str. Hildenborough imidazoleglycerol-phosphate dehydratase YP_010261.2 1142839 R 882 CDS YP_010262.1 46579454 2795262 complement(1143464..1144237) 1 NC_002937.3 identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 1144237 tatC 2795262 tatC Desulfovibrio vulgaris str. Hildenborough Sec-independent protein translocase TatC YP_010262.1 1143464 R 882 CDS YP_010263.1 46579455 2795263 complement(1144695..1145063) 1 NC_002937.3 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; twin-arginine translocation protein TatB 1145063 tatB 2795263 tatB Desulfovibrio vulgaris str. Hildenborough twin-arginine translocation protein TatB YP_010263.1 1144695 R 882 CDS YP_010264.1 46579456 2795264 complement(1145100..1146647) 1 NC_002937.3 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1146647 guaA 2795264 guaA Desulfovibrio vulgaris str. Hildenborough GMP synthase YP_010264.1 1145100 R 882 CDS YP_010265.1 46579457 2795265 complement(1146685..1148142) 1 NC_002937.3 identified by similarity to SP:P50099; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5`-monophosphate dehydrogenase 1148142 guaB 2795265 guaB Desulfovibrio vulgaris str. Hildenborough inosine-5`-monophosphate dehydrogenase YP_010265.1 1146685 R 882 CDS YP_010266.1 46579458 2795266 complement(1148402..1148998) 1 NC_002937.3 hypothetical protein 1148998 2795266 DVU1045 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010266.1 1148402 R 882 CDS YP_010267.1 46579459 2795267 complement(1148991..1149128) 1 NC_002937.3 hypothetical protein 1149128 2795267 DVU1046 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010267.1 1148991 R 882 CDS YP_010268.1 46579460 2795268 complement(1149138..1149812) 1 NC_002937.3 identified by similarity to SP:P33929; match to protein family HMM PF01578; cytochrome c-type biogenesis protein CcmC 1149812 ccmC 2795268 ccmC Desulfovibrio vulgaris str. Hildenborough cytochrome c-type biogenesis protein CcmC YP_010268.1 1149138 R 882 CDS YP_010269.1 46579461 2795269 complement(1149864..1150541) 1 NC_002937.3 cytochrome c-type biogenesis protein CcmB 1150541 ccmB 2795269 ccmB Desulfovibrio vulgaris str. Hildenborough cytochrome c-type biogenesis protein CcmB YP_010269.1 1149864 R 882 CDS YP_010270.1 46579462 2794895 complement(1150535..1151185) 1 NC_002937.3 identified by similarity to SP:P46903; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1151185 2794895 DVU1049 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_010270.1 1150535 R 882 CDS YP_010271.1 46579463 2794896 complement(1151185..1153080) 1 NC_002937.3 identified by match to protein family HMM PF01578; cytochrome c-type biogenesis protein CcmF 1153080 ccmF 2794896 ccmF Desulfovibrio vulgaris str. Hildenborough cytochrome c-type biogenesis protein CcmF YP_010271.1 1151185 R 882 CDS YP_010272.1 46579464 2794897 complement(1153168..1153581) 1 NC_002937.3 cytochrome c-type biogenesis protein CcmE 1153581 ccmE 2794897 ccmE Desulfovibrio vulgaris str. Hildenborough cytochrome c-type biogenesis protein CcmE YP_010272.1 1153168 R 882 CDS YP_010273.1 46579465 2794898 complement(1153719..1154783) 1 NC_002937.3 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hypothetical protein 1154783 2794898 DVU1052 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010273.1 1153719 R 882 CDS YP_010274.1 46579466 2794899 1154768..1154860 1 NC_002937.3 hypothetical protein 1154860 2794899 DVU1053 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010274.1 1154768 D 882 CDS YP_010275.1 46579467 2794900 1154949..1155587 1 NC_002937.3 identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; HAD superfamily hydrolase 1155587 2794900 DVU1054 Desulfovibrio vulgaris str. Hildenborough HAD superfamily hydrolase YP_010275.1 1154949 D 882 CDS YP_010276.1 46579468 2794901 1155824..1156858 1 NC_002937.3 identified by match to protein family HMM PF01075; heptosyltransferase 1156858 2794901 DVU1055 Desulfovibrio vulgaris str. Hildenborough heptosyltransferase YP_010276.1 1155824 D 882 CDS YP_010277.1 46579469 2794902 complement(1157353..1158174) 1 NC_002937.3 identified by similarity to OMNI:BR1368; match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein 1158174 2794902 DVU1056 Desulfovibrio vulgaris str. Hildenborough cobalt ABC transporter ATP-binding protein YP_010277.1 1157353 R 882 CDS YP_010278.1 46579470 2794903 complement(1158171..1158941) 1 NC_002937.3 identified by similarity to OMNI:BR1367; match to protein family HMM PF02361; cobalt ABC transporter permease 1158941 2794903 DVU1057 Desulfovibrio vulgaris str. Hildenborough cobalt ABC transporter permease YP_010278.1 1158171 R 882 CDS YP_010279.1 46579471 2794770 complement(1158944..1159558) 1 NC_002937.3 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 1159558 cbiM 2794770 cbiM Desulfovibrio vulgaris str. Hildenborough cobalt transport protein CbiM YP_010279.1 1158944 R 882 CDS YP_010280.1 46579472 2794771 complement(1159778..1160950) 1 NC_002937.3 aminotransferase 1160950 2794771 DVU1059 Desulfovibrio vulgaris str. Hildenborough aminotransferase YP_010280.1 1159778 R 882 CDS YP_010281.1 46579473 2794772 complement(1160947..1162050) 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1162050 2794772 DVU1060 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_010281.1 1160947 R 882 CDS YP_010282.1 46579474 2794773 complement(1162060..1163121) 1 NC_002937.3 identified by similarity to SP:P71243; match to protein family HMM PF00534; glycosyl transferase family protein 1163121 2794773 DVU1061 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_010282.1 1162060 R 882 CDS YP_010283.1 46579475 2794774 complement(1163247..1164017) 1 NC_002937.3 identified by similarity to OMNI:NTL01SS02998; hypothetical protein 1164017 2794774 DVU1062 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010283.1 1163247 R 882 CDS YP_010284.1 46579476 2794775 1164161..1165600 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; transcriptional regulator 1165600 2794775 DVU1063 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_010284.1 1164161 D 882 CDS YP_010285.1 46579477 2794776 1165948..1167876 1 NC_002937.3 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1167876 2794776 DVU1064 Desulfovibrio vulgaris str. Hildenborough aconitate hydratase YP_010285.1 1165948 D 882 CDS YP_010286.1 46579478 2794777 1167904..1169793 1 NC_002937.3 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerse domain-containing protein 1169793 2794777 DVU1065 Desulfovibrio vulgaris str. Hildenborough peptidyl-prolyl cis-trans isomerse domain-containing protein YP_010286.1 1167904 D 882 CDS YP_010287.1 46579479 2794778 1170213..1170704 1 NC_002937.3 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 1170704 gpt 2794778 gpt Desulfovibrio vulgaris str. Hildenborough xanthine-guanine phosphoribosyltransferase YP_010287.1 1170213 D 882 CDS YP_010288.1 46579480 2794037 1170790..1171938 1 NC_002937.3 identified by match to protein family HMM PF02608; Bmp family membrane protein 1171938 2794037 DVU1067 Desulfovibrio vulgaris str. Hildenborough Bmp family membrane protein YP_010288.1 1170790 D 882 CDS YP_010289.1 46579481 2794038 1171964..1173028 1 NC_002937.3 identified by match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 1173028 2794038 DVU1068 Desulfovibrio vulgaris str. Hildenborough branched-chain amino acid ABC transporter permease YP_010289.1 1171964 D 882 CDS YP_010290.1 46579482 2794039 1173025..1173945 1 NC_002937.3 identified by match to protein family HMM PF02653; branched chain amino acid ABC transporter permease 1173945 2794039 DVU1069 Desulfovibrio vulgaris str. Hildenborough branched chain amino acid ABC transporter permease YP_010290.1 1173025 D 882 CDS YP_010291.2 304569693 2794040 1173950..1175524 1 NC_002937.3 identified by match to protein family HMM PF00005; branched chain amino acid ABC transporter ATP-binding protein 1175524 2794040 DVU1070 Desulfovibrio vulgaris str. Hildenborough branched chain amino acid ABC transporter ATP-binding protein YP_010291.2 1173950 D 882 CDS YP_010292.1 46579484 2794041 complement(1175953..1176543) 1 NC_002937.3 hypothetical protein 1176543 2794041 DVU1071 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010292.1 1175953 R 882 CDS YP_010293.1 46579485 2794042 complement(1176605..1177267) 1 NC_002937.3 identified by similarity to OMNI:BR1366; hypothetical protein 1177267 2794042 DVU1072 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010293.1 1176605 R 882 CDS YP_010294.1 46579486 2794043 1177463..1178389 1 NC_002937.3 identified by similarity to OMNI:NT01MC2073; hypothetical protein 1178389 2794043 DVU1073 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010294.1 1177463 D 882 CDS YP_010295.1 46579487 2794044 1178593..1178727 1 NC_002937.3 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1178727 rpmH 2794044 rpmH Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L34 YP_010295.1 1178593 D 882 CDS YP_010296.1 46579488 2794045 1178814..1179104 1 NC_002937.3 identified by similarity to SP:P58031; match to protein family HMM TIGR00188; ribonuclease P protein component 1179104 rnpA 2794045 rnpA Desulfovibrio vulgaris str. Hildenborough ribonuclease P protein component YP_010296.1 1178814 D 882 CDS YP_010297.1 46579489 2794046 1179101..1179361 1 NC_002937.3 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1179361 2794046 DVU1076 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010297.1 1179101 D 882 CDS YP_010298.1 46579490 2794455 1179369..1180973 1 NC_002937.3 identified by match to protein family HMM PF02096; inner membrane protein, 60 kDa 1180973 2794455 DVU1077 Desulfovibrio vulgaris str. Hildenborough inner membrane protein, 60 kDa YP_010298.1 1179369 D 882 CDS YP_010299.1 46579491 2794456 1181012..1182304 1 NC_002937.3 identified by match to protein family HMM PF01424; R3H domain-containing protein 1182304 2794456 DVU1078 Desulfovibrio vulgaris str. Hildenborough R3H domain-containing protein YP_010299.1 1181012 D 882 CDS YP_010300.1 46579492 2794457 1182378..1183751 1 NC_002937.3 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1183751 trmE 2794457 trmE Desulfovibrio vulgaris str. Hildenborough tRNA modification GTPase TrmE YP_010300.1 1182378 D 882 CDS YP_010301.1 46579493 2794458 1184070..1184612 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 1184612 2794458 DVU1080 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_010301.1 1184070 D 882 CDS YP_010302.1 46579494 2794459 1184609..1186228 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 1186228 2794459 DVU1081 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_010302.1 1184609 D 882 CDS YP_010303.1 46579495 2794460 1186345..1186953 1 NC_002937.3 identified by match to protein family HMM PF01612; 3' exoribonuclease 1186953 2794460 DVU1082 Desulfovibrio vulgaris str. Hildenborough 3' exoribonuclease YP_010303.1 1186345 D 882 CDS YP_010304.1 46579496 2794461 1187127..1187816 1 NC_002937.3 identified by similarity to SP:P23620; match to protein family HMM PF00072; match to protein family HMM PF00486; phosphate regulon transcriptional regulator PhoB 1187816 phoB 2794461 phoB Desulfovibrio vulgaris str. Hildenborough phosphate regulon transcriptional regulator PhoB YP_010304.1 1187127 D 882 CDS YP_010305.1 46579497 2794462 1187844..1188611 1 NC_002937.3 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1188611 pstB-1 2794462 pstB-1 Desulfovibrio vulgaris str. Hildenborough phosphate transporter ATP-binding protein YP_010305.1 1187844 D 882 CDS YP_010306.1 46579498 2794463 1188620..1189285 1 NC_002937.3 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system protein PhoU 1189285 phoU 2794463 phoU Desulfovibrio vulgaris str. Hildenborough phosphate transport system protein PhoU YP_010306.1 1188620 D 882 CDS YP_010307.1 46579499 2794065 1189443..1190192 1 NC_002937.3 hypothetical protein 1190192 2794065 DVU1086 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010307.1 1189443 D 882 CDS YP_010308.1 46579500 2794066 1190196..1191176 1 NC_002937.3 identified by similarity to GP:2342730; hypothetical protein 1191176 2794066 DVU1087 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010308.1 1190196 D 882 CDS YP_010309.1 46579501 2794067 1191223..1191399 1 NC_002937.3 hypothetical protein 1191399 2794067 DVU1088 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010309.1 1191223 D 882 CDS YP_010310.1 46579502 2794068 complement(1191779..1194418) 1 NC_002937.3 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1194418 alaS 2794068 alaS Desulfovibrio vulgaris str. Hildenborough alanyl-tRNA synthetase YP_010310.1 1191779 R 882 CDS YP_010311.1 46579503 2794069 complement(1194497..1195570) 1 NC_002937.3 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1195570 recA 2794069 recA Desulfovibrio vulgaris str. Hildenborough recombinase A YP_010311.1 1194497 R 882 CDS YP_010312.1 46579504 2794070 1195859..1196965 1 NC_002937.3 identified by similarity to OMNI:NTL03CP2210; hypothetical protein 1196965 2794070 DVU1091 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010312.1 1195859 D 882 CDS YP_010313.1 46579505 2794071 1197183..1198544 1 NC_002937.3 identified by similarity to SP:P45320; match to protein family HMM PF00209; sodium-dependent symporter family protein 1198544 2794071 DVU1092 Desulfovibrio vulgaris str. Hildenborough sodium-dependent symporter family protein YP_010313.1 1197183 D 882 CDS YP_010314.1 46579506 2794072 complement(1198734..1199264) 1 NC_002937.3 HAD family hydrolase 1199264 2794072 DVU1093 Desulfovibrio vulgaris str. Hildenborough HAD family hydrolase YP_010314.1 1198734 R 882 CDS YP_010315.1 46579507 2794073 complement(1199397..1200779) 1 NC_002937.3 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1200779 argH 2794073 argH Desulfovibrio vulgaris str. Hildenborough argininosuccinate lyase YP_010315.1 1199397 R 882 CDS YP_010316.1 46579508 2794339 complement(1200783..1201973) 1 NC_002937.3 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1201973 argG 2794339 argG Desulfovibrio vulgaris str. Hildenborough argininosuccinate synthase YP_010316.1 1200783 R 882 CDS YP_010317.1 46579509 2794340 complement(1202025..1202927) 1 NC_002937.3 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1202927 argF 2794340 argF Desulfovibrio vulgaris str. Hildenborough ornithine carbamoyltransferase YP_010317.1 1202025 R 882 CDS YP_010318.1 46579510 2794341 1203069..1203818 1 NC_002937.3 identified by similarity to OMNI:NTL01MM2648; hypothetical protein 1203818 2794341 DVU1097 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010318.1 1203069 D 882 CDS YP_010319.1 46579511 2794343 complement(1204238..1204981) 1 NC_002937.3 identified by match to protein family HMM PF01555; adenine specific DNA methyltransferase 1204981 2794343 DVU1098 Desulfovibrio vulgaris str. Hildenborough adenine specific DNA methyltransferase YP_010319.1 1204238 R 882 CDS YP_010320.1 46579512 2794344 complement(1205411..1205857) 1 NC_002937.3 tail fiber assembly protein 1205857 2794344 DVU1099 Desulfovibrio vulgaris str. Hildenborough tail fiber assembly protein YP_010320.1 1205411 R 882 CDS YP_010321.1 46579513 2795073 complement(1205871..1207388) 1 NC_002937.3 tail fiber protein 1207388 2795073 DVU1100 Desulfovibrio vulgaris str. Hildenborough tail fiber protein YP_010321.1 1205871 R 882 CDS YP_010322.1 46579514 2795074 complement(1207390..1208046) 1 NC_002937.3 hypothetical protein 1208046 2795074 DVU1101 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010322.1 1207390 R 882 CDS YP_010323.1 46579515 2795075 complement(1208201..1209355) 1 NC_002937.3 baseplate assembly protein 1209355 2795075 DVU1102 Desulfovibrio vulgaris str. Hildenborough baseplate assembly protein YP_010323.1 1208201 R 882 CDS YP_010324.1 46579516 2795076 complement(1209360..1209794) 1 NC_002937.3 identified by match to protein family HMM PF04965; baseplate assembly protein 1209794 2795076 DVU1103 Desulfovibrio vulgaris str. Hildenborough baseplate assembly protein YP_010324.1 1209360 R 882 CDS YP_010325.1 46579517 2795077 complement(1209791..1210522) 1 NC_002937.3 baseplate assembly protein 1210522 2795077 DVU1104 Desulfovibrio vulgaris str. Hildenborough baseplate assembly protein YP_010325.1 1209791 R 882 CDS YP_010326.1 46579518 2795078 complement(1210509..1211309) 1 NC_002937.3 hypothetical protein 1211309 2795078 DVU1105 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010326.1 1210509 R 882 CDS YP_010327.1 46579519 2795079 complement(1211455..1212006) 1 NC_002937.3 hypothetical protein 1212006 2795079 DVU1106 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010327.1 1211455 R 882 CDS YP_010328.1 46579520 2795080 complement(1212003..1214345) 1 NC_002937.3 identified by similarity to OMNI:NTL01XF00731; match to protein family HMM TIGR01760; tail tape measure protein 1214345 2795080 DVU1107 Desulfovibrio vulgaris str. Hildenborough tail tape measure protein YP_010328.1 1212003 R 882 CDS YP_010329.1 46579521 2795081 complement(1214546..1214878) 1 NC_002937.3 hypothetical protein 1214878 2795081 DVU1108 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010329.1 1214546 R 882 CDS YP_010330.1 46579522 2795082 1215111..1216133 1 NC_002937.3 identified by match to protein family HMM PF00991; ATPase 1216133 2795082 DVU1109 Desulfovibrio vulgaris str. Hildenborough ATPase YP_010330.1 1215111 D 882 CDS YP_010331.1 46579523 2793343 complement(1216193..1216639) 1 NC_002937.3 hypothetical protein 1216639 2793343 DVU1110 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010331.1 1216193 R 882 CDS YP_010332.1 46579524 2793344 complement(1216652..1218337) 1 NC_002937.3 hypothetical protein 1218337 2793344 DVU1111 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010332.1 1216652 R 882 CDS YP_010333.1 46579525 2793345 complement(1218347..1218727) 1 NC_002937.3 hypothetical protein 1218727 2793345 DVU1112 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010333.1 1218347 R 882 CDS YP_010334.1 46579526 2793346 complement(1218729..1219265) 1 NC_002937.3 hypothetical protein 1219265 2793346 DVU1113 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010334.1 1218729 R 882 CDS YP_010335.1 46579527 2793347 complement(1219280..1219720) 1 NC_002937.3 identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; virion morphogenesis protein 1219720 2793347 DVU1114 Desulfovibrio vulgaris str. Hildenborough virion morphogenesis protein YP_010335.1 1219280 R 882 CDS YP_010336.1 46579528 2793348 complement(1219720..1220151) 1 NC_002937.3 hypothetical protein 1220151 2793348 DVU1115 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010336.1 1219720 R 882 CDS YP_010337.1 46579529 2793349 complement(1220432..1221427) 1 NC_002937.3 hypothetical protein 1221427 2793349 DVU1116 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010337.1 1220432 R 882 CDS YP_010338.1 46579530 2793350 complement(1221436..1221783) 1 NC_002937.3 hypothetical protein 1221783 2793350 DVU1117 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010338.1 1221436 R 882 CDS YP_010339.1 46579531 2793351 complement(1221799..1222749) 1 NC_002937.3 identified by similarity to OMNI:NTL03ST1420; hypothetical protein 1222749 2793351 DVU1118 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010339.1 1221799 R 882 CDS YP_010340.1 46579532 2793352 complement(1222939..1224240) 1 NC_002937.3 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; virion morphogenesis protein 1224240 2793352 DVU1119 Desulfovibrio vulgaris str. Hildenborough virion morphogenesis protein YP_010340.1 1222939 R 882 CDS YP_010341.1 46579533 2794731 complement(1224240..1225832) 1 NC_002937.3 identified by similarity to OMNI:NTL03ST1417; hypothetical protein 1225832 2794731 DVU1120 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010341.1 1224240 R 882 CDS YP_010342.1 46579534 2794732 complement(1225917..1226537) 1 NC_002937.3 hypothetical protein 1226537 2794732 DVU1121 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010342.1 1225917 R 882 CDS YP_010343.1 46579535 2794733 complement(1226597..1228081) 1 NC_002937.3 portal protein 1228081 2794733 DVU1122 Desulfovibrio vulgaris str. Hildenborough portal protein YP_010343.1 1226597 R 882 CDS YP_010344.1 46579536 2794734 complement(1228132..1228701) 1 NC_002937.3 identified by similarity to GP:1772508; hypothetical protein 1228701 2794734 DVU1123 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010344.1 1228132 R 882 CDS YP_010345.1 46579537 2794735 complement(1228740..1228982) 1 NC_002937.3 hypothetical protein 1228982 2794735 DVU1124 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010345.1 1228740 R 882 CDS YP_010346.1 46579538 2794736 complement(1228979..1229452) 1 NC_002937.3 identified by similarity to GP:5531665; hypothetical protein 1229452 2794736 DVU1125 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010346.1 1228979 R 882 CDS YP_010347.1 46579539 2794737 complement(1229449..1229754) 1 NC_002937.3 lipoprotein 1229754 2794737 DVU1126 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010347.1 1229449 R 882 CDS YP_010348.1 46579540 2794738 complement(1229708..1230121) 1 NC_002937.3 hypothetical protein 1230121 2794738 DVU1127 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010348.1 1229708 R 882 CDS YP_010349.1 46579541 2794739 complement(1230114..1230779) 1 NC_002937.3 identified by match to protein family HMM PF01464; lysozyme 1230779 2794739 DVU1128 Desulfovibrio vulgaris str. Hildenborough lysozyme YP_010349.1 1230114 R 882 CDS YP_010350.1 46579542 2795202 complement(1230779..1231147) 1 NC_002937.3 identified by similarity to OMNI:NTL03ST1409; hypothetical protein 1231147 2795202 DVU1129 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010350.1 1230779 R 882 CDS YP_010351.1 46579543 2795203 complement(1231221..1231685) 1 NC_002937.3 DNA-binding protein 1231685 2795203 DVU1130 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_010351.1 1231221 R 882 CDS YP_010352.1 46579544 2795204 complement(1231669..1232034) 1 NC_002937.3 hypothetical protein 1232034 2795204 DVU1131 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010352.1 1231669 R 882 CDS YP_010353.1 46579545 2795205 complement(1232031..1232540) 1 NC_002937.3 identified by similarity to OMNI:NMB0985; hypothetical protein 1232540 2795205 DVU1132 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010353.1 1232031 R 882 CDS YP_010354.1 46579546 2795206 complement(1232504..1232962) 1 NC_002937.3 hypothetical protein 1232962 2795206 DVU1133 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010354.1 1232504 R 882 CDS YP_010355.1 46579547 2795207 complement(1233044..1233331) 1 NC_002937.3 identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU subunit beta 1233331 hupB 2795207 hupB Desulfovibrio vulgaris str. Hildenborough DNA-binding protein HU subunit beta YP_010355.1 1233044 R 882 CDS YP_010356.1 46579548 2795208 complement(1233345..1233584) 1 NC_002937.3 identified by similarity to GP:14277814; hypothetical protein 1233584 2795208 DVU1135 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010356.1 1233345 R 882 CDS YP_010357.1 46579549 2795209 complement(1233602..1234114) 1 NC_002937.3 identified by similarity to SP:P06023; host-nuclease inhibitor protein Gam 1234114 2795209 DVU1136 Desulfovibrio vulgaris str. Hildenborough host-nuclease inhibitor protein Gam YP_010357.1 1233602 R 882 CDS YP_010358.1 46579550 2795210 complement(1234116..1234304) 1 NC_002937.3 hypothetical protein 1234304 2795210 DVU1137 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010358.1 1234116 R 882 CDS YP_010359.1 46579551 2795211 complement(1234307..1234939) 1 NC_002937.3 hypothetical protein 1234939 2795211 DVU1138 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010359.1 1234307 R 882 CDS YP_010360.1 46579552 2793422 complement(1234932..1235669) 1 NC_002937.3 identified by similarity to GP:974770; bacteriophage DNA transposition B protein 1235669 2793422 DVU1139 Desulfovibrio vulgaris str. Hildenborough bacteriophage DNA transposition B protein YP_010360.1 1234932 R 882 CDS YP_010361.1 46579553 2793423 complement(1235666..1237819) 1 NC_002937.3 identified by similarity to SP:P07636; bacteriophage transposase A protein 1237819 2793423 DVU1140 Desulfovibrio vulgaris str. Hildenborough bacteriophage transposase A protein YP_010361.1 1235666 R 882 CDS YP_010362.1 46579554 2793424 complement(1238043..1238474) 1 NC_002937.3 hypothetical protein 1238474 2793424 DVU1141 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010362.1 1238043 R 882 CDS YP_010363.1 46579555 2793425 complement(1238531..1238800) 1 NC_002937.3 transcriptional regulator 1238800 2793425 DVU1142 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_010363.1 1238531 R 882 CDS YP_010364.1 46579556 2793426 complement(1238797..1239222) 1 NC_002937.3 hypothetical protein 1239222 2793426 DVU1143 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010364.1 1238797 R 882 CDS YP_010365.1 46579557 2793427 1239484..1240251 1 NC_002937.3 identified by match to protein family HMM PF00717; Cro/CI family transcriptional regulator 1240251 2793427 DVU1144 Desulfovibrio vulgaris str. Hildenborough Cro/CI family transcriptional regulator YP_010365.1 1239484 D 882 CDS YP_010366.1 46579558 2793428 1240891..1241031 1 NC_002937.3 hypothetical protein 1241031 2793428 DVU1145 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010366.1 1240891 D 882 CDS YP_010367.1 46579559 2793430 1241837..1243216 1 NC_002937.3 identified by similarity to GP:1245347; match to protein family HMM PF03062; alginate o-acetyltransferase AlgI 1243216 2793430 DVU1147 Desulfovibrio vulgaris str. Hildenborough alginate o-acetyltransferase AlgI YP_010367.1 1241837 D 882 CDS YP_010368.1 46579560 2794371 1243218..1244264 1 NC_002937.3 identified by similarity to GP:28202763; hypothetical protein 1244264 2794371 DVU1148 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010368.1 1243218 D 882 CDS YP_010369.1 46579561 2794373 1245191..1245604 1 NC_002937.3 identified by similarity to OMNI:NTL01YP0371; hypothetical protein 1245604 2794373 DVU1150 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010369.1 1245191 D 882 CDS YP_010370.1 46579562 2794374 1245814..1245966 1 NC_002937.3 hypothetical protein 1245966 2794374 DVU1151 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010370.1 1245814 D 882 CDS YP_010371.1 46579563 2794375 1246091..1246705 1 NC_002937.3 hypothetical protein 1246705 2794375 DVU1152 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010371.1 1246091 D 882 CDS YP_010372.1 46579564 2794376 complement(1246834..1246944) 1 NC_002937.3 hypothetical protein 1246944 2794376 DVU1153 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010372.1 1246834 R 882 CDS YP_010373.1 46579565 2794377 complement(1246999..1247136) 1 NC_002937.3 hypothetical protein 1247136 2794377 DVU1154 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010373.1 1246999 R 882 CDS YP_010374.1 46579566 2794378 complement(1247203..1247307) 1 NC_002937.3 hypothetical protein 1247307 2794378 DVU1155 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010374.1 1247203 R 882 CDS YP_010375.1 46579567 2794379 complement(1247371..1248810) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator /response regulator 1248810 2794379 DVU1156 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator /response regulator YP_010375.1 1247371 R 882 CDS YP_010376.1 46579568 2794230 complement(1248807..1252064) 1 NC_002937.3 identified by match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1252064 2794230 DVU1157 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_010376.1 1248807 R 882 CDS YP_010377.1 46579569 2794231 1252320..1252634 1 NC_002937.3 hypothetical protein 1252634 2794231 DVU1158 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010377.1 1252320 D 882 CDS YP_010378.1 46579570 2794232 complement(1252817..1252963) 1 NC_002937.3 hypothetical protein 1252963 2794232 DVU1159 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010378.1 1252817 R 882 CDS YP_010379.1 46579571 2794233 complement(1253139..1254152) 1 NC_002937.3 identified by similarity to SP:Q13336; match to protein family HMM PF03253; urea transporter 1254152 2794233 DVU1160 Desulfovibrio vulgaris str. Hildenborough urea transporter YP_010379.1 1253139 R 882 CDS YP_010380.1 46579572 2794234 complement(1254189..1254419) 1 NC_002937.3 hypothetical protein 1254419 2794234 DVU1161 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010380.1 1254189 R 882 CDS YP_010381.1 46579573 2794235 complement(1254406..1254597) 1 NC_002937.3 hypothetical protein 1254597 2794235 DVU1162 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010381.1 1254406 R 882 CDS YP_010382.1 46579574 2794236 complement(1254740..1256014) 1 NC_002937.3 identified by match to protein family HMM PF00083; major facilitator superfamily protein 1256014 2794236 DVU1163 Desulfovibrio vulgaris str. Hildenborough major facilitator superfamily protein YP_010382.1 1254740 R 882 CDS YP_010383.1 46579575 2794237 complement(1256134..1257138) 1 NC_002937.3 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase 1257138 amiF 2794237 amiF Desulfovibrio vulgaris str. Hildenborough formamidase YP_010383.1 1256134 R 882 CDS YP_010384.1 46579576 2794238 1257810..1259129 1 NC_002937.3 identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 1259129 2794238 DVU1165 Desulfovibrio vulgaris str. Hildenborough pyridine nucleotide-disulfide oxidoreductase YP_010384.1 1257810 D 882 CDS YP_010385.1 46579577 2794239 complement(1259571..1259723) 1 NC_002937.3 hypothetical protein 1259723 2794239 DVU1166 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010385.1 1259571 R 882 CDS YP_010386.1 46579578 2794855 1259801..1260337 1 NC_002937.3 hypothetical protein 1260337 2794855 DVU1167 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010386.1 1259801 D 882 CDS YP_010387.1 46579579 2794856 complement(1260521..1260937) 1 NC_002937.3 hypothetical protein 1260937 2794856 DVU1168 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010387.1 1260521 R 882 CDS YP_010388.1 46579580 2794857 complement(1261035..1263449) 1 NC_002937.3 identified by similarity to SP:P39215; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1263449 2794857 DVU1169 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_010388.1 1261035 R 882 CDS YP_010389.1 46579581 2794858 complement(1263761..1263949) 1 NC_002937.3 hypothetical protein 1263949 2794858 DVU1170 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010389.1 1263761 R 882 CDS YP_010390.1 46579582 2794859 1263965..1264060 1 NC_002937.3 hypothetical protein 1264060 2794859 DVU1171 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010390.1 1263965 D 882 CDS YP_010391.1 46579583 2794860 complement(1264312..1264449) 1 NC_002937.3 hypothetical protein 1264449 2794860 DVU1172 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010391.1 1264312 R 882 CDS YP_010392.1 46579584 2794861 1264555..1266111 1 NC_002937.3 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1266111 mviN-1 2794861 mviN-1 Desulfovibrio vulgaris str. Hildenborough integral membrane protein MviN YP_010392.1 1264555 D 882 CDS YP_010393.1 46579585 2794862 complement(1266446..1266823) 1 NC_002937.3 hypothetical protein 1266823 2794862 DVU1174 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010393.1 1266446 R 882 CDS YP_010394.1 46579586 2794863 complement(1266860..1267297) 1 NC_002937.3 hypothetical protein 1267297 2794863 DVU1175 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010394.1 1266860 R 882 CDS YP_010395.1 46579587 2794864 1267479..1268036 1 NC_002937.3 hypothetical protein 1268036 2794864 DVU1176 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010395.1 1267479 D 882 CDS YP_010396.1 46579588 2796662 complement(1268360..1269022) 1 NC_002937.3 hypothetical protein 1269022 2796662 DVU1177 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010396.1 1268360 R 882 CDS YP_010397.1 46579589 2796663 complement(1269031..1269150) 1 NC_002937.3 hypothetical protein 1269150 2796663 DVU1178 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010397.1 1269031 R 882 CDS YP_010398.1 46579590 2796664 1269177..1270907 1 NC_002937.3 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730; tungsten-containing aldehyde:ferredoxin oxidoreductase 1270907 aor 2796664 aor Desulfovibrio vulgaris str. Hildenborough tungsten-containing aldehyde:ferredoxin oxidoreductase YP_010398.1 1269177 D 882 CDS YP_010399.1 46579591 2796665 complement(1271134..1271358) 1 NC_002937.3 hypothetical protein 1271358 2796665 DVU1180 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010399.1 1271134 R 882 CDS YP_010400.1 46579592 2796666 complement(1271372..1272442) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277; response regulator 1272442 2796666 DVU1181 Desulfovibrio vulgaris str. Hildenborough response regulator YP_010400.1 1271372 R 882 CDS YP_010401.1 46579593 2796667 complement(1272491..1273405) 1 NC_002937.3 hypothetical protein 1273405 2796667 DVU1182 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010401.1 1272491 R 882 CDS YP_010402.2 304569694 2796668 complement(1273387..1274634) 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 1274634 2796668 DVU1183 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_010402.2 1273387 R 882 CDS YP_010404.1 46579596 2796670 1274805..1275284 1 NC_002937.3 identified by match to protein family HMM PF02674; colicin V production family protein 1275284 2796670 DVU1185 Desulfovibrio vulgaris str. Hildenborough colicin V production family protein YP_010404.1 1274805 D 882 CDS YP_010405.1 46579597 2796671 1275312..1276115 1 NC_002937.3 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 1276115 mazG 2796671 mazG Desulfovibrio vulgaris str. Hildenborough nucleoside triphosphate pyrophosphohydrolase YP_010405.1 1275312 D 882 CDS YP_010406.1 46579598 2796587 1276232..1277056 1 NC_002937.3 hypothetical protein 1277056 2796587 DVU1187 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010406.1 1276232 D 882 CDS YP_010407.1 46579599 2796588 1277104..1277325 1 NC_002937.3 hypothetical protein 1277325 2796588 DVU1188 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010407.1 1277104 D 882 CDS YP_010408.1 46579600 2796589 1277322..1278521 1 NC_002937.3 identified by similarity to OMNI:VC0624; match to protein family HMM PF01594; hypothetical protein 1278521 2796589 DVU1189 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010408.1 1277322 D 882 CDS YP_010409.1 46579601 2796590 1278751..1281531 1 NC_002937.3 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1281531 2796590 DVU1190 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_010409.1 1278751 D 882 CDS YP_010410.1 46579602 2796591 complement(1281920..1284490) 1 NC_002937.3 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; match to protein family HMM TIGR01369; ATP-dependent protease La 1284490 2796591 DVU1191 Desulfovibrio vulgaris str. Hildenborough ATP-dependent protease La YP_010410.1 1281920 R 882 CDS YP_010411.1 46579603 2796592 complement(1284487..1284789) 1 NC_002937.3 identified by match to protein family HMM PF00708; acylphosphatase 1284789 2796592 DVU1192 Desulfovibrio vulgaris str. Hildenborough acylphosphatase YP_010411.1 1284487 R 882 CDS YP_010412.1 46579604 2796593 complement(1284798..1285475) 1 NC_002937.3 identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608; DNA repair protein RadC 1285475 radC 2796593 radC Desulfovibrio vulgaris str. Hildenborough DNA repair protein RadC YP_010412.1 1284798 R 882 CDS YP_010413.1 46579605 2796594 complement(1285511..1286617) 1 NC_002937.3 hypothetical protein 1286617 2796594 DVU1194 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010413.1 1285511 R 882 CDS YP_010414.1 46579606 2796595 complement(1286583..1287101) 1 NC_002937.3 lipoprotein 1287101 2796595 DVU1195 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010414.1 1286583 R 882 CDS YP_010415.1 46579607 2796653 complement(1287085..1289574) 1 NC_002937.3 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1289574 leuS 2796653 leuS Desulfovibrio vulgaris str. Hildenborough leucyl-tRNA synthetase YP_010415.1 1287085 R 882 CDS YP_010416.1 46579608 2796654 complement(1289617..1290078) 1 NC_002937.3 identified by similarity to SP:P04381; match to protein family HMM PF01029; N utilization substance protein B 1290078 nusB 2796654 nusB Desulfovibrio vulgaris str. Hildenborough N utilization substance protein B YP_010416.1 1289617 R 882 CDS YP_010417.1 46579609 2796655 complement(1290082..1290552) 1 NC_002937.3 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1290552 ribH 2796655 ribH Desulfovibrio vulgaris str. Hildenborough 6,7-dimethyl-8-ribityllumazine synthase YP_010417.1 1290082 R 882 CDS YP_010418.1 46579610 2796656 complement(1290684..1291913) 1 NC_002937.3 identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1291913 ribAB 2796656 ribAB Desulfovibrio vulgaris str. Hildenborough 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_010418.1 1290684 R 882 CDS YP_010419.1 46579611 2796657 complement(1291945..1292607) 1 NC_002937.3 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1292607 ribE 2796657 ribE Desulfovibrio vulgaris str. Hildenborough riboflavin synthase subunit alpha YP_010419.1 1291945 R 882 CDS YP_010420.1 46579612 2796658 complement(1292613..1293746) 1 NC_002937.3 identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 1293746 ribD 2796658 ribD Desulfovibrio vulgaris str. Hildenborough riboflavin biosynthesis protein RibD YP_010420.1 1292613 R 882 CDS YP_010421.1 46579613 2796659 complement(1293749..1294279) 1 NC_002937.3 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 1294279 2796659 DVU1202 Desulfovibrio vulgaris str. Hildenborough cytidine/deoxycytidylate deaminase YP_010421.1 1293749 R 882 CDS YP_010422.1 46579614 2796660 complement(1294345..1295583) 1 NC_002937.3 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1295583 glyA 2796660 glyA Desulfovibrio vulgaris str. Hildenborough serine hydroxymethyltransferase YP_010422.1 1294345 R 882 CDS YP_010423.1 46579615 2796661 complement(1295642..1296889) 1 NC_002937.3 identified by similarity to SP:P73283; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 1296889 fabF 2796661 fabF Desulfovibrio vulgaris str. Hildenborough 3-oxoacyl-ACP synthase YP_010423.1 1295642 R 882 CDS YP_010424.1 46579616 2796682 complement(1297077..1297307) 1 NC_002937.3 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1297307 acpP 2796682 acpP Desulfovibrio vulgaris str. Hildenborough acyl carrier protein YP_010424.1 1297077 R 882 CDS YP_010425.1 46579617 2796683 complement(1297364..1298107) 1 NC_002937.3 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 1298107 fabG 2796683 fabG Desulfovibrio vulgaris str. Hildenborough 3-oxoacyl-ACP reductase YP_010425.1 1297364 R 882 CDS YP_010426.1 46579618 2796684 complement(1298192..1299184) 1 NC_002937.3 identified by similarity to SP:P30790; match to protein family HMM TIGR00747; 3-oxoacyl-ACP synthase 1299184 fabH 2796684 fabH Desulfovibrio vulgaris str. Hildenborough 3-oxoacyl-ACP synthase YP_010426.1 1298192 R 882 CDS YP_010427.1 46579619 2796685 complement(1299241..1300278) 1 NC_002937.3 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1300278 plsX 2796685 plsX Desulfovibrio vulgaris str. Hildenborough glycerol-3-phosphate acyltransferase PlsX YP_010427.1 1299241 R 882 CDS YP_010428.1 46579620 2796686 complement(1300271..1300450) 1 NC_002937.3 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1300450 rpmF 2796686 rpmF Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L32 YP_010428.1 1300271 R 882 CDS YP_010429.1 46579621 2796687 complement(1300495..1301031) 1 NC_002937.3 identified by similarity to GP:1491791; match to protein family HMM PF02620; hypothetical protein 1301031 2796687 DVU1210 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010429.1 1300495 R 882 CDS YP_010430.1 46579622 2796688 1301234..1301443 1 NC_002937.3 required for 70S ribosome assembly; 50S ribosomal protein L28 1301443 rpmB 2796688 rpmB Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L28 YP_010430.1 1301234 D 882 CDS YP_010431.1 46579623 2796689 1301750..1302310 1 NC_002937.3 identified by similarity to SP:P37147; match to protein family HMM PF04186; fxsA protein 1302310 fsxA 2796689 fsxA Desulfovibrio vulgaris str. Hildenborough fxsA protein YP_010431.1 1301750 D 882 CDS YP_010432.1 46579624 2796690 1302307..1303320 1 NC_002937.3 identified by match to protein family HMM PF01694; rhomboid family protein 1303320 2796690 DVU1213 Desulfovibrio vulgaris str. Hildenborough rhomboid family protein YP_010432.1 1302307 D 882 CDS YP_010433.2 304569695 2796672 complement(1303706..1305898) 1 NC_002937.3 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1305898 2796672 DVU1214 Desulfovibrio vulgaris str. Hildenborough dolichyl-phosphate-mannose-protein mannosyltransferase YP_010433.2 1303706 R 882 CDS YP_010434.1 46579626 2796673 complement(1305895..1306551) 1 NC_002937.3 identified by match to protein family HMM PF01569; PAP2 family protein 1306551 2796673 DVU1215 Desulfovibrio vulgaris str. Hildenborough PAP2 family protein YP_010434.1 1305895 R 882 CDS YP_010435.1 46579627 2796674 complement(1306615..1306839) 1 NC_002937.3 hypothetical protein 1306839 2796674 DVU1216 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010435.1 1306615 R 882 CDS YP_010436.1 46579628 2796675 1307187..1308596 1 NC_002937.3 identified by similarity to SP:P37340; match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1308596 2796675 DVU1217 Desulfovibrio vulgaris str. Hildenborough MATE efflux family protein YP_010436.1 1307187 D 882 CDS YP_010437.1 46579629 2796676 complement(1308927..1309226) 1 NC_002937.3 identified by similarity to SP:Q58452; match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein 1309226 2796676 DVU1218 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010437.1 1308927 R 882 CDS YP_010438.1 46579630 2796677 complement(1309280..1311475) 1 NC_002937.3 identified by similarity to GP:6724082; hypothetical protein 1311475 2796677 DVU1219 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010438.1 1309280 R 882 CDS YP_010439.1 46579631 2796678 1311642..1312466 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF00881; nitroreductase 1312466 2796678 DVU1220 Desulfovibrio vulgaris str. Hildenborough nitroreductase YP_010439.1 1311642 D 882 CDS YP_010440.1 46579632 2796679 1312447..1312692 1 NC_002937.3 hypothetical protein 1312692 2796679 DVU1221 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010440.1 1312447 D 882 CDS YP_010441.1 46579633 2796680 1312689..1313216 1 NC_002937.3 hypothetical protein 1313216 2796680 DVU1222 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010441.1 1312689 D 882 CDS YP_010442.2 304569696 2796681 complement(1313384..1314952) 1 NC_002937.3 identified by similarity to SP:O27068; match to protein family HMM PF02624; hypothetical protein 1314952 2796681 DVU1223 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010442.2 1313384 R 882 CDS YP_010443.1 46579635 2794119 1315670..1316518 1 NC_002937.3 identified by similarity to SP:P12638; match to protein family HMM PF01261; match to protein family HMM TIGR00587; endonuclease IV 1316518 nfo 2794119 nfo Desulfovibrio vulgaris str. Hildenborough endonuclease IV YP_010443.1 1315670 D 882 CDS YP_010444.1 46579636 2794120 complement(1317005..1317457) 1 NC_002937.3 hypothetical protein 1317457 2794120 DVU1225 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010444.1 1317005 R 882 CDS YP_010445.1 46579637 2794121 1317469..1317564 1 NC_002937.3 hypothetical protein 1317564 2794121 DVU1226 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010445.1 1317469 D 882 CDS YP_010446.1 46579638 2794122 1317647..1317760 1 NC_002937.3 hypothetical protein 1317760 2794122 DVU1227 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010446.1 1317647 D 882 CDS YP_010447.1 46579639 2794123 complement(1317780..1318298) 1 NC_002937.3 identified by similarity to SP:P37901; match to protein family HMM PF00578; thiol peroxidase 1318298 tpX 2794123 tpX Desulfovibrio vulgaris str. Hildenborough thiol peroxidase YP_010447.1 1317780 R 882 CDS YP_010448.1 46579640 2794124 complement(1318295..1318456) 1 NC_002937.3 hypothetical protein 1318456 2794124 DVU1229 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010448.1 1318295 R 882 CDS YP_010449.1 46579641 2794125 1318494..1318604 1 NC_002937.3 hypothetical protein 1318604 2794125 DVU1230 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010449.1 1318494 D 882 CDS YP_010450.1 46579642 2794126 1318601..1319809 1 NC_002937.3 identified by similarity to SP:Q07429; match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 1319809 amt 2794126 amt Desulfovibrio vulgaris str. Hildenborough ammonium transporter YP_010450.1 1318601 D 882 CDS YP_010451.1 46579643 2794127 1319932..1320270 1 NC_002937.3 identified by similarity to SP:P21193; match to protein family HMM PF00543; nitrogen regulatory protein P-II 1320270 glnB-1 2794127 glnB-1 Desulfovibrio vulgaris str. Hildenborough nitrogen regulatory protein P-II YP_010451.1 1319932 D 882 CDS YP_010452.1 46579644 2794410 1320326..1323046 1 NC_002937.3 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; protein-P-II uridylyltransferase 1323046 2794410 DVU1233 Desulfovibrio vulgaris str. Hildenborough protein-P-II uridylyltransferase YP_010452.1 1320326 D 882 CDS YP_010453.1 46579645 2794411 1323117..1323848 1 NC_002937.3 identified by match to protein family HMM PF01925; hypothetical protein 1323848 2794411 DVU1234 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010453.1 1323117 D 882 CDS YP_010454.1 46579646 2794412 1324232..1324852 1 NC_002937.3 hypothetical protein 1324852 2794412 DVU1235 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010454.1 1324232 D 882 CDS YP_010455.1 46579647 2794413 complement(1325232..1325975) 1 NC_002937.3 identified by similarity to SP:Q52815; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 1325975 2794413 DVU1236 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter ATP-binding protein YP_010455.1 1325232 R 882 CDS YP_010456.1 46579648 2794414 complement(1325962..1326732) 1 NC_002937.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1326732 2794414 DVU1237 Desulfovibrio vulgaris str. Hildenborough His/Glu/Gln/Arg/opine ABC transporter permease YP_010456.1 1325962 R 882 CDS YP_010457.1 46579649 2794415 complement(1326839..1327579) 1 NC_002937.3 identified by similarity to SP:P30859; match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein 1327579 2794415 DVU1238 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter periplasmic amino acid-binding protein YP_010457.1 1326839 R 882 CDS YP_010458.1 46579650 2794416 complement(1327711..1328313) 1 NC_002937.3 identified by similarity to GP:5458792; match to protein family HMM PF03956; hypothetical protein 1328313 2794416 DVU1239 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010458.1 1327711 R 882 CDS YP_010459.1 46579651 2794417 complement(1328303..1328710) 1 NC_002937.3 hypothetical protein 1328710 2794417 DVU1240 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010459.1 1328303 R 882 CDS YP_010460.1 46579652 2794418 1329016..1329333 1 NC_002937.3 identified by similarity to OMNI:NTL01FN1126; hypothetical protein 1329333 2794418 DVU1241 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010460.1 1329016 D 882 CDS YP_010461.1 46579653 2794419 complement(1329456..1330277) 1 NC_002937.3 identified by similarity to SP:P76506; match to protein family HMM PF04333; vacJ lipoprotein 1330277 2794419 DVU1242 Desulfovibrio vulgaris str. Hildenborough vacJ lipoprotein YP_010461.1 1329456 R 882 CDS YP_010462.1 46579654 2795024 complement(1330286..1330918) 1 NC_002937.3 identified by similarity to GP:22799047; hypothetical protein 1330918 2795024 DVU1243 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010462.1 1330286 R 882 CDS YP_010463.1 46579655 2795025 complement(1330922..1331368) 1 NC_002937.3 identified by similarity to OMNI:NTL01RS2960; match to protein family HMM PF02470; hypothetical protein 1331368 2795025 DVU1244 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010463.1 1330922 R 882 CDS YP_010464.1 46579656 2795026 complement(1331477..1332301) 1 NC_002937.3 identified by similarity to SP:P45393; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1332301 2795026 DVU1245 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_010464.1 1331477 R 882 CDS YP_010465.1 46579657 2795027 complement(1332313..1333116) 1 NC_002937.3 identified by similarity to OMNI:NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056; hypothetical protein 1333116 2795027 DVU1246 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010465.1 1332313 R 882 CDS YP_010466.1 46579658 2795028 complement(1333148..1333969) 1 NC_002937.3 hypothetical protein 1333969 2795028 DVU1247 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010466.1 1333148 R 882 CDS YP_010467.1 46579659 2795029 complement(1333990..1335645) 1 NC_002937.3 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1335645 argS 2795029 argS Desulfovibrio vulgaris str. Hildenborough arginyl-tRNA synthetase YP_010467.1 1333990 R 882 CDS YP_010468.1 46579660 2795030 complement(1335876..1336829) 1 NC_002937.3 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-ACP transacylase 1336829 fabD 2795030 fabD Desulfovibrio vulgaris str. Hildenborough malonyl CoA-ACP transacylase YP_010468.1 1335876 R 882 CDS YP_010469.1 46579661 2795031 1336980..1337636 1 NC_002937.3 identified by similarity to SP:P17113; methyltransferase GidB 1337636 gidB 2795031 gidB Desulfovibrio vulgaris str. Hildenborough methyltransferase GidB YP_010469.1 1336980 D 882 CDS YP_010470.1 46579662 2795032 complement(1337597..1337815) 1 NC_002937.3 hypothetical protein 1337815 2795032 DVU1251 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010470.1 1337597 R 882 CDS YP_010471.1 46579663 2794598 1337944..1340220 1 NC_002937.3 hypothetical protein 1340220 2794598 DVU1252 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010471.1 1337944 D 882 CDS YP_010472.1 46579664 2794599 complement(1340271..1340399) 1 NC_002937.3 hypothetical protein 1340399 2794599 DVU1253 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010472.1 1340271 R 882 CDS YP_010473.1 46579665 2794600 complement(1340438..1340908) 1 NC_002937.3 identified by similarity to OMNI:NTL03SA0024; match to protein family HMM PF02590; hypothetical protein 1340908 2794600 DVU1254 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010473.1 1340438 R 882 CDS YP_010474.1 46579666 2794601 1341261..1341893 1 NC_002937.3 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1341893 2794601 DVU1255 Desulfovibrio vulgaris str. Hildenborough Sua5/YciO/YrdC/YwlC family protein YP_010474.1 1341261 D 882 CDS YP_010475.1 46579667 2794602 complement(1342002..1343090) 1 NC_002937.3 identified by match to protein family HMM PF01075; heptosyltransferase 1343090 2794602 DVU1256 Desulfovibrio vulgaris str. Hildenborough heptosyltransferase YP_010475.1 1342002 R 882 CDS YP_010476.1 46579668 2794603 1343358..1343630 1 NC_002937.3 identified by match to protein family HMM PF00076; RNA-binding protein 1343630 2794603 DVU1257 Desulfovibrio vulgaris str. Hildenborough RNA-binding protein YP_010476.1 1343358 D 882 CDS YP_010477.1 46579669 2794604 complement(1343777..1345957) 1 NC_002937.3 identified by similarity to GP:9651982; match to protein family HMM PF00120; glutamine synthetase 1345957 glnN 2794604 glnN Desulfovibrio vulgaris str. Hildenborough glutamine synthetase YP_010477.1 1343777 R 882 CDS YP_010478.1 46579670 2794605 1346082..1346186 1 NC_002937.3 hypothetical protein 1346186 2794605 DVU1259 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010478.1 1346082 D 882 CDS YP_010479.1 46579671 2794606 1346657..1347940 1 NC_002937.3 identified by similarity to GP:9716643; match to protein family HMM PF03349; outer membrane protein P1 1347940 2794606 DVU1260 Desulfovibrio vulgaris str. Hildenborough outer membrane protein P1 YP_010479.1 1346657 D 882 CDS YP_010480.1 46579672 2794607 complement(1348254..1350014) 1 NC_002937.3 identified by similarity to SP:P45754; hypothetical protein 1350014 2794607 DVU1261 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010480.1 1348254 R 882 CDS YP_010481.1 46579673 2793582 complement(1350023..1351132) 1 NC_002937.3 identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 1351132 2793582 DVU1262 Desulfovibrio vulgaris str. Hildenborough twitching motility protein PilT YP_010481.1 1350023 R 882 CDS YP_010482.1 46579674 2793583 1351308..1352111 1 NC_002937.3 identified by similarity to SP:P31712; similarity to SP:Q46836; type IV prepilin-like proteins leader peptidase 1352111 pppA 2793583 pppA Desulfovibrio vulgaris str. Hildenborough type IV prepilin-like proteins leader peptidase YP_010482.1 1351308 D 882 CDS YP_010483.1 46579675 2793584 complement(1352419..1353180) 1 NC_002937.3 identified by match to protein family HMM PF01464; transglycosylase 1353180 2793584 DVU1264 Desulfovibrio vulgaris str. Hildenborough transglycosylase YP_010483.1 1352419 R 882 CDS YP_010484.1 46579676 2793585 1353191..1353940 1 NC_002937.3 hypothetical protein 1353940 2793585 DVU1265 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010484.1 1353191 D 882 CDS YP_010485.1 46579677 2793586 complement(1354391..1357828) 1 NC_002937.3 hypothetical protein 1357828 2793586 DVU1266 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010485.1 1354391 R 882 CDS YP_010486.1 46579678 2793587 complement(1357839..1358522) 1 NC_002937.3 hypothetical protein 1358522 2793587 DVU1267 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010486.1 1357839 R 882 CDS YP_010487.1 46579679 2793588 complement(1358519..1358932) 1 NC_002937.3 hypothetical protein 1358932 2793588 DVU1268 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010487.1 1358519 R 882 CDS YP_010488.1 46579680 2793589 1359012..1359146 1 NC_002937.3 hypothetical protein 1359146 2793589 DVU1269 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010488.1 1359012 D 882 CDS YP_010489.1 46579681 2793590 complement(1359233..1360513) 1 NC_002937.3 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein 1360513 2793590 DVU1270 Desulfovibrio vulgaris str. Hildenborough twitching motility protein YP_010489.1 1359233 R 882 CDS YP_003858608.1 304569756 9714855 complement(1360581..1360913) 1 NC_002937.3 hypothetical protein 1360913 9714855 DVU4015 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858608.1 1360581 R 882 CDS YP_010490.1 46579682 2793591 complement(1361119..1362345) 1 NC_002937.3 identified by similarity to GP:4139238; match to protein family HMM PF00482; general secretion pathway protein F 1362345 2793591 DVU1271 Desulfovibrio vulgaris str. Hildenborough general secretion pathway protein F YP_010490.1 1361119 R 882 CDS YP_010491.1 46579683 2794262 complement(1362349..1364070) 1 NC_002937.3 identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157; general secretion pathway protein E 1364070 2794262 DVU1272 Desulfovibrio vulgaris str. Hildenborough general secretion pathway protein E YP_010491.1 1362349 R 882 CDS YP_010492.1 46579684 2794263 complement(1364359..1365933) 1 NC_002937.3 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; type II/III secretion system protein 1365933 2794263 DVU1273 Desulfovibrio vulgaris str. Hildenborough type II/III secretion system protein YP_010492.1 1364359 R 882 CDS YP_010493.1 46579685 2794264 complement(1365953..1366396) 1 NC_002937.3 hypothetical protein 1366396 2794264 DVU1274 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010493.1 1365953 R 882 CDS YP_010494.1 46579686 2794265 complement(1366452..1367012) 1 NC_002937.3 hypothetical protein 1367012 2794265 DVU1275 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010494.1 1366452 R 882 CDS YP_010495.1 46579687 2794266 complement(1367009..1368928) 1 NC_002937.3 hypothetical protein 1368928 2794266 DVU1276 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010495.1 1367009 R 882 CDS YP_010496.1 46579688 2794267 1369213..1369350 1 NC_002937.3 hypothetical protein 1369350 2794267 DVU1277 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010496.1 1369213 D 882 CDS YP_010497.1 46579689 2794269 1369986..1371956 1 NC_002937.3 identified by similarity to GP:5531227; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241; cell division protein FtsH 1371956 ftsH 2794269 ftsH Desulfovibrio vulgaris str. Hildenborough cell division protein FtsH YP_010497.1 1369986 D 882 CDS YP_010498.1 46579690 2794345 1371953..1372813 1 NC_002937.3 identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1372813 folP 2794345 folP Desulfovibrio vulgaris str. Hildenborough dihydropteroate synthase YP_010498.1 1371953 D 882 CDS YP_010499.1 46579691 2794346 1372822..1373568 1 NC_002937.3 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 1373568 2794346 DVU1280 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010499.1 1372822 D 882 CDS YP_010500.1 46579692 2794347 1373570..1374472 1 NC_002937.3 identified by similarity to OMNI:NTL01TT2044; hypothetical protein 1374472 2794347 DVU1281 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010500.1 1373570 D 882 CDS YP_010501.1 46579693 2794348 1374532..1375884 1 NC_002937.3 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1375884 glmM 2794348 glmM Desulfovibrio vulgaris str. Hildenborough phosphoglucosamine mutase YP_010501.1 1374532 D 882 CDS YP_010502.1 46579694 2794349 1375922..1376800 1 NC_002937.3 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 1376800 galU 2794349 galU Desulfovibrio vulgaris str. Hildenborough UTP-glucose-1-phosphate uridylyltransferase YP_010502.1 1375922 D 882 CDS YP_010503.1 46579695 2794350 1376876..1379254 1 NC_002937.3 identified by match to protein family HMM PF00271; match to protein family HMM TIGR00595; primosomal protein n' 1379254 priA 2794350 priA Desulfovibrio vulgaris str. Hildenborough primosomal protein n' YP_010503.1 1376876 D 882 CDS YP_010504.1 46579696 2794351 1379291..1379896 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 1379896 2794351 DVU1285 Desulfovibrio vulgaris str. Hildenborough response regulator YP_010504.1 1379291 D 882 CDS YP_010505.1 46579697 2794352 complement(1380084..1381247) 1 NC_002937.3 identified by match to protein family HMM PF03916; reductase, transmembrane subunit 1381247 2794352 DVU1286 Desulfovibrio vulgaris str. Hildenborough reductase, transmembrane subunit YP_010505.1 1380084 R 882 CDS YP_010506.1 46579698 2794740 complement(1381259..1382044) 1 NC_002937.3 identified by match to protein family HMM PF00037; reductase, iron-sulfur binding subunit 1382044 2794740 DVU1287 Desulfovibrio vulgaris str. Hildenborough reductase, iron-sulfur binding subunit YP_010506.1 1381259 R 882 CDS YP_010507.1 46579699 2794741 complement(1382044..1382424) 1 NC_002937.3 identified by similarity to OMNI:AF0503; cytochrome c family protein 1382424 2794741 DVU1288 Desulfovibrio vulgaris str. Hildenborough cytochrome c family protein YP_010507.1 1382044 R 882 CDS YP_010508.1 46579700 2794742 complement(1382427..1384037) 1 NC_002937.3 identified by match to protein family HMM PF00037; reductase, iron-sulfur binding subunit 1384037 2794742 DVU1289 Desulfovibrio vulgaris str. Hildenborough reductase, iron-sulfur binding subunit YP_010508.1 1382427 R 882 CDS YP_010509.1 46579701 2794743 complement(1384047..1385051) 1 NC_002937.3 identified by match to protein family HMM PF02665; nitrate reductase subunit gamma 1385051 2794743 DVU1290 Desulfovibrio vulgaris str. Hildenborough nitrate reductase subunit gamma YP_010509.1 1384047 R 882 CDS YP_010510.2 304569697 2794744 complement(1385086..1385613) 1 NC_002937.3 hypothetical protein 1385613 2794744 DVU1291 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010510.2 1385086 R 882 CDS YP_010511.1 46579703 2794745 complement(1385555..1385728) 1 NC_002937.3 hypothetical protein 1385728 2794745 DVU1292 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010511.1 1385555 R 882 CDS YP_003858609.1 304569744 9714854 complement(1385824..1386354) 1 NC_002937.3 hypothetical protein 1386354 9714854 DVU4003 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858609.1 1385824 R 882 CDS YP_010513.1 46579705 2794747 1386862..1387560 1 NC_002937.3 identified by similarity to OMNI:CT0704; match to protein family HMM PF01863; hypothetical protein 1387560 2794747 DVU1294 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010513.1 1386862 D 882 CDS YP_010514.1 46579706 2794748 complement(1387712..1388995) 1 NC_002937.3 identified by similarity to SP:P56864; match to protein family HMM PF01747; match to protein family HMM TIGR00339; sulfate adenylyltransferase 1388995 sat 2794748 sat Desulfovibrio vulgaris str. Hildenborough sulfate adenylyltransferase YP_010514.1 1387712 R 882 CDS YP_010515.1 46579707 2794749 1388988..1389119 1 NC_002937.3 hypothetical protein 1389119 2794749 DVU1296 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010515.1 1388988 D 882 CDS YP_010516.1 46579708 2795185 1389116..1389268 1 NC_002937.3 hypothetical protein 1389268 2795185 DVU1297 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010516.1 1389116 D 882 CDS YP_010517.1 46579709 2795186 1389633..1390004 1 NC_002937.3 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1390004 rpsL 2795186 rpsL Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S12 YP_010517.1 1389633 D 882 CDS YP_010518.1 46579710 2795187 1390020..1390490 1 NC_002937.3 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1390490 rpsG 2795187 rpsG Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S7 YP_010518.1 1390020 D 882 CDS YP_010519.1 46579711 2795188 1390506..1392581 1 NC_002937.3 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1392581 fusA-1 2795188 fusA-1 Desulfovibrio vulgaris str. Hildenborough elongation factor G YP_010519.1 1390506 D 882 CDS YP_010520.1 46579712 2795189 1393042..1393224 1 NC_002937.3 hypothetical protein 1393224 2795189 DVU1301 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010520.1 1393042 D 882 CDS YP_010521.1 46579713 2795190 1393231..1393548 1 NC_002937.3 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1393548 rpsJ 2795190 rpsJ Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S10 YP_010521.1 1393231 D 882 CDS YP_010522.1 46579714 2795191 1393561..1394190 1 NC_002937.3 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1394190 rplC 2795191 rplC Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L3 YP_010522.1 1393561 D 882 CDS YP_010523.1 46579715 2795192 1394209..1394829 1 NC_002937.3 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1394829 rplD 2795192 rplD Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L4 YP_010523.1 1394209 D 882 CDS YP_010524.1 46579716 2795193 1394795..1395133 1 NC_002937.3 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1395133 rplW 2795193 rplW Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L23 YP_010524.1 1394795 D 882 CDS YP_010525.1 46579717 2794189 1395137..1395967 1 NC_002937.3 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1395967 rplB 2794189 rplB Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L2 YP_010525.1 1395137 D 882 CDS YP_010526.1 46579718 2794190 1395977..1396258 1 NC_002937.3 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1396258 rpsS 2794190 rpsS Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S19 YP_010526.1 1395977 D 882 CDS YP_010527.1 46579719 2794191 1396271..1396609 1 NC_002937.3 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1396609 rplV 2794191 rplV Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L22 YP_010527.1 1396271 D 882 CDS YP_010528.1 46579720 2794192 1396614..1397252 1 NC_002937.3 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1397252 rpsC 2794192 rpsC Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S3 YP_010528.1 1396614 D 882 CDS YP_010529.1 46579721 2794193 1397255..1397668 1 NC_002937.3 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1397668 rplP 2794193 rplP Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L16 YP_010529.1 1397255 D 882 CDS YP_010530.1 46579722 2794194 1397670..1397855 1 NC_002937.3 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1397855 rpmC 2794194 rpmC Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L29 YP_010530.1 1397670 D 882 CDS YP_010531.1 46579723 2794195 1397866..1398132 1 NC_002937.3 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1398132 rpsQ 2794195 rpsQ Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S17 YP_010531.1 1397866 D 882 CDS YP_010532.1 46579724 2794380 1398143..1398511 1 NC_002937.3 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1398511 rplN 2794380 rplN Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L14 YP_010532.1 1398143 D 882 CDS YP_010533.1 46579725 2794381 1398521..1398844 1 NC_002937.3 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1398844 rplX 2794381 rplX Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L24 YP_010533.1 1398521 D 882 CDS YP_010534.1 46579726 2794382 1398856..1399395 1 NC_002937.3 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1399395 rplE 2794382 rplE Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L5 YP_010534.1 1398856 D 882 CDS YP_010535.1 46579727 2794383 1399408..1399593 1 NC_002937.3 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1399593 rpsN 2794383 rpsN Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S14 YP_010535.1 1399408 D 882 CDS YP_010536.1 46579728 2794384 1399612..1399992 1 NC_002937.3 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1399992 rpsH 2794384 rpsH Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S8 YP_010536.1 1399612 D 882 CDS YP_010537.1 46579729 2794385 1400005..1400544 1 NC_002937.3 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1400544 rplF 2794385 rplF Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L6 YP_010537.1 1400005 D 882 CDS YP_010538.1 46579730 2794386 1400558..1400917 1 NC_002937.3 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1400917 rplR 2794386 rplR Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L18 YP_010538.1 1400558 D 882 CDS YP_010539.1 46579731 2794387 1400937..1401428 1 NC_002937.3 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1401428 rpsE 2794387 rpsE Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S5 YP_010539.1 1400937 D 882 CDS YP_010540.1 46579732 2794388 1401438..1401608 1 NC_002937.3 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1401608 rpmD 2794388 rpmD Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L30 YP_010540.1 1401438 D 882 CDS YP_010541.1 46579733 2794617 1401608..1402054 1 NC_002937.3 late assembly protein; 50S ribosomal protein L15 1402054 rplO 2794617 rplO Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L15 YP_010541.1 1401608 D 882 CDS YP_010542.1 46579734 2794618 1402058..1403371 1 NC_002937.3 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1403371 secY 2794618 secY Desulfovibrio vulgaris str. Hildenborough preprotein translocase subunit SecY YP_010542.1 1402058 D 882 CDS YP_010543.1 46579735 2794619 1403373..1404152 1 NC_002937.3 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 1404152 map 2794619 map Desulfovibrio vulgaris str. Hildenborough methionine aminopeptidase YP_010543.1 1403373 D 882 CDS YP_010544.1 46579736 2794620 1404246..1404359 1 NC_002937.3 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1404359 rpmJ 2794620 rpmJ Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L36 YP_010544.1 1404246 D 882 CDS YP_010545.1 46579737 2794621 1404378..1404746 1 NC_002937.3 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1404746 rpsM 2794621 rpsM Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S13 YP_010545.1 1404378 D 882 CDS YP_010546.1 46579738 2794622 1404895..1405284 1 NC_002937.3 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1405284 rpsK 2794622 rpsK Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S11 YP_010546.1 1404895 D 882 CDS YP_010547.1 46579739 2794623 1405300..1405926 1 NC_002937.3 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1405926 rpsD 2794623 rpsD Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S4 YP_010547.1 1405300 D 882 CDS YP_010548.1 46579740 2794624 1405939..1406982 1 NC_002937.3 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1406982 rpoA 2794624 rpoA Desulfovibrio vulgaris str. Hildenborough DNA-directed RNA polymerase subunit alpha YP_010548.1 1405939 D 882 CDS YP_010549.1 46579741 2794625 1406972..1407373 1 NC_002937.3 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1407373 rplQ 2794625 rplQ Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L17 YP_010549.1 1406972 D 882 CDS YP_010550.1 46579742 2794578 1407515..1408441 1 NC_002937.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1408441 2794578 DVU1331 Desulfovibrio vulgaris str. Hildenborough LysR family transcriptional regulator YP_010550.1 1407515 D 882 CDS YP_010551.1 46579743 2794579 1408431..1409486 1 NC_002937.3 selenoprotein; identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase, selenocysteine-containing 1409486 selD 2794579 selD Desulfovibrio vulgaris str. Hildenborough selenide, water dikinase, selenocysteine-containing YP_010551.1 1408431 D 882 CDS YP_010552.1 46579744 2794580 1409514..1409639 1 NC_002937.3 hypothetical protein 1409639 2794580 DVU1333 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010552.1 1409514 D 882 CDS YP_010553.1 46579745 2794582 1409785..1411086 1 NC_002937.3 identified by similarity to SP:P80698; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115; trigger factor 1411086 tig 2794582 tig Desulfovibrio vulgaris str. Hildenborough trigger factor YP_010553.1 1409785 D 882 CDS YP_010554.1 46579746 2794583 1411273..1411878 1 NC_002937.3 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1411878 clpP 2794583 clpP Desulfovibrio vulgaris str. Hildenborough ATP-dependent Clp protease proteolytic subunit YP_010554.1 1411273 D 882 CDS YP_010555.1 46579747 2794584 1411889..1413142 1 NC_002937.3 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1413142 clpX 2794584 clpX Desulfovibrio vulgaris str. Hildenborough ATP-dependent protease ATP-binding subunit ClpX YP_010555.1 1411889 D 882 CDS YP_010556.1 46579748 2794585 1413261..1415726 1 NC_002937.3 identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 1415726 lon 2794585 lon Desulfovibrio vulgaris str. Hildenborough ATP-dependent protease La YP_010556.1 1413261 D 882 CDS YP_010557.1 46579749 2794586 complement(1415889..1416473) 1 NC_002937.3 identified by similarity to OMNI:SO3257; hypothetical protein 1416473 2794586 DVU1338 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010557.1 1415889 R 882 CDS YP_010558.1 46579750 2795138 complement(1416774..1417604) 1 NC_002937.3 lipoprotein 1417604 2795138 DVU1339 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010558.1 1416774 R 882 CDS YP_010559.1 46579751 2795139 complement(1417766..1418260) 1 NC_002937.3 Fur family transcriptional regulator 1418260 2795139 DVU1340 Desulfovibrio vulgaris str. Hildenborough Fur family transcriptional regulator YP_010559.1 1417766 R 882 CDS YP_010560.1 46579752 2795140 complement(1418257..1419081) 1 NC_002937.3 identified by similarity to GP:5019735; match to protein family HMM PF00950; cation ABC transporter permease 1419081 2795140 DVU1341 Desulfovibrio vulgaris str. Hildenborough cation ABC transporter permease YP_010560.1 1418257 R 882 CDS YP_010561.1 46579753 2795141 complement(1419083..1419889) 1 NC_002937.3 identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005; cation ABC transporter ATP-binding protein 1419889 2795141 DVU1342 Desulfovibrio vulgaris str. Hildenborough cation ABC transporter ATP-binding protein YP_010561.1 1419083 R 882 CDS YP_010562.1 46579754 2795142 complement(1419892..1420899) 1 NC_002937.3 identified by match to protein family HMM PF01297; cation ABC transporter periplasmc-binding protein 1420899 2795142 DVU1343 Desulfovibrio vulgaris str. Hildenborough cation ABC transporter periplasmc-binding protein YP_010562.1 1419892 R 882 CDS YP_010563.1 46579755 2795143 1421161..1422321 1 NC_002937.3 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1422321 ispG 2795143 ispG Desulfovibrio vulgaris str. Hildenborough 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_010563.1 1421161 D 882 CDS YP_010564.1 46579756 2795144 1422321..1424045 1 NC_002937.3 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1424045 proS 2795144 proS Desulfovibrio vulgaris str. Hildenborough prolyl-tRNA synthetase YP_010564.1 1422321 D 882 CDS YP_010565.1 46579757 2795145 1424092..1425489 1 NC_002937.3 identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 1425489 xseA 2795145 xseA Desulfovibrio vulgaris str. Hildenborough exodeoxyribonuclease VII large subunit YP_010565.1 1424092 D 882 CDS YP_010566.1 46579758 2795146 1425518..1426432 1 NC_002937.3 identified by match to protein family HMM PF01551; M24/M37 family peptidase 1426432 2795146 DVU1347 Desulfovibrio vulgaris str. Hildenborough M24/M37 family peptidase YP_010566.1 1425518 D 882 CDS YP_010567.1 46579759 2795147 1426444..1426689 1 NC_002937.3 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1426689 xseB 2795147 xseB Desulfovibrio vulgaris str. Hildenborough exodeoxyribonuclease VII small subunit YP_010567.1 1426444 D 882 CDS YP_010568.1 46579760 2794915 1426709..1427572 1 NC_002937.3 identified by similarity to GP:5631295; match to protein family HMM PF00348; geranylgeranyl diphosphate synthase 1427572 2794915 DVU1349 Desulfovibrio vulgaris str. Hildenborough geranylgeranyl diphosphate synthase YP_010568.1 1426709 D 882 CDS YP_010569.1 46579761 2794916 1427612..1429537 1 NC_002937.3 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1429537 dxs 2794916 dxs Desulfovibrio vulgaris str. Hildenborough 1-deoxy-D-xylulose-5-phosphate synthase YP_010569.1 1427612 D 882 CDS YP_010570.1 46579762 2794917 complement(1429780..1430382) 1 NC_002937.3 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC membrane protein 1430382 2794917 DVU1351 Desulfovibrio vulgaris str. Hildenborough MarC membrane protein YP_010570.1 1429780 R 882 CDS YP_010571.1 46579763 2794918 complement(1430512..1430901) 1 NC_002937.3 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 1430901 2794918 DVU1352 Desulfovibrio vulgaris str. Hildenborough 6-pyruvoyl tetrahydrobiopterin synthase YP_010571.1 1430512 R 882 CDS YP_010572.1 46579764 2794919 complement(1430903..1434397) 1 NC_002937.3 identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 1434397 dnaE 2794919 dnaE Desulfovibrio vulgaris str. Hildenborough DNA polymerase III subunit alpha YP_010572.1 1430903 R 882 CDS YP_010573.1 46579765 2794920 1434594..1434851 1 NC_002937.3 hypothetical protein 1434851 2794920 DVU1354 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010573.1 1434594 D 882 CDS YP_010574.1 46579766 2794921 1434875..1435243 1 NC_002937.3 hypothetical protein 1435243 2794921 DVU1355 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010574.1 1434875 D 882 CDS YP_010575.1 46579767 2794922 1435251..1436054 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 1436054 2794922 DVU1356 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_010575.1 1435251 D 882 CDS YP_010576.1 46579768 2794923 1436051..1436677 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0547; hypothetical protein 1436677 2794923 DVU1357 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010576.1 1436051 D 882 CDS YP_010577.1 46579769 2794924 complement(1436896..1437543) 1 NC_002937.3 identified by match to protein family HMM PF00702; HAD superfamily hydrolase 1437543 2794924 DVU1358 Desulfovibrio vulgaris str. Hildenborough HAD superfamily hydrolase YP_010577.1 1436896 R 882 CDS YP_010578.1 46579770 2795083 complement(1437585..1438868) 1 NC_002937.3 hypothetical protein 1438868 2795083 DVU1359 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010578.1 1437585 R 882 CDS YP_010579.1 46579771 2795084 1438843..1439838 1 NC_002937.3 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1439838 galE 2795084 galE Desulfovibrio vulgaris str. Hildenborough UDP-glucose 4-epimerase YP_010579.1 1438843 D 882 CDS YP_010580.1 46579772 2795085 complement(1439920..1441050) 1 NC_002937.3 identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215; lipid A disaccharide synthase 1441050 lpxB 2795085 lpxB Desulfovibrio vulgaris str. Hildenborough lipid A disaccharide synthase YP_010580.1 1439920 R 882 CDS YP_010581.1 46579773 2795086 complement(1441052..1442020) 1 NC_002937.3 hypothetical protein 1442020 2795086 DVU1362 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010581.1 1441052 R 882 CDS YP_010582.1 46579774 2795087 complement(1442048..1442923) 1 NC_002937.3 identified by match to protein family HMM PF04321; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 1442923 rfbD 2795087 rfbD Desulfovibrio vulgaris str. Hildenborough dTDP-4-dehydrorhamnose reductase YP_010582.1 1442048 R 882 CDS YP_010583.1 46579775 2795088 complement(1442920..1443942) 1 NC_002937.3 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 1443942 rfbB 2795088 rfbB Desulfovibrio vulgaris str. Hildenborough dTDP-glucose 4,6-dehydratase YP_010583.1 1442920 R 882 CDS YP_010584.1 46579776 2795089 1444130..1444978 1 NC_002937.3 identified by similarity to SP:Q05592; match to protein family HMM PF06180; heme-binding protein 1444978 2795089 DVU1365 Desulfovibrio vulgaris str. Hildenborough heme-binding protein YP_010584.1 1444130 D 882 CDS YP_010585.1 46579777 2795090 1445139..1446044 1 NC_002937.3 lipoprotein 1446044 2795090 DVU1366 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010585.1 1445139 D 882 CDS YP_010586.1 46579778 2795091 complement(1446107..1446304) 1 NC_002937.3 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A 1446304 tatA 2795091 tatA Desulfovibrio vulgaris str. Hildenborough twin arginine translocase A YP_010586.1 1446107 R 882 CDS YP_010587.1 46579779 2795092 1446416..1448038 1 NC_002937.3 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1448038 2795092 DVU1368 Desulfovibrio vulgaris str. Hildenborough rhodanese-like domain-containing protein YP_010587.1 1446416 D 882 CDS YP_010588.1 46579780 2793502 1448110..1448484 1 NC_002937.3 hypothetical protein 1448484 2793502 DVU1369 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010588.1 1448110 D 882 CDS YP_010589.1 46579781 2793503 1448497..1449369 1 NC_002937.3 hypothetical protein 1449369 2793503 DVU1370 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010589.1 1448497 D 882 CDS YP_010590.1 46579782 2793504 1449380..1450054 1 NC_002937.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 1450054 2793504 DVU1371 Desulfovibrio vulgaris str. Hildenborough HAD family hydrolase YP_010590.1 1449380 D 882 CDS YP_010591.1 46579783 2793505 1450159..1450461 1 NC_002937.3 identified by similarity to OMNI:NTL01CJ00797; match to protein family HMM PF02325; hypothetical protein 1450461 2793505 DVU1372 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010591.1 1450159 D 882 CDS YP_010592.1 46579784 2793506 1450470..1450979 1 NC_002937.3 identified by similarity to OMNI:NTL01BS1543; match to protein family HMM PF05103; cell-division initiation protein DivIVA 1450979 divIVA 2793506 divIVA Desulfovibrio vulgaris str. Hildenborough cell-division initiation protein DivIVA YP_010592.1 1450470 D 882 CDS YP_010593.1 46579785 2793507 1450972..1451292 1 NC_002937.3 identified by similarity to OMNI:NT01MC2722; match to protein family HMM PF02594; hypothetical protein 1451292 2793507 DVU1374 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010593.1 1450972 D 882 CDS YP_010594.1 46579786 2793508 1451313..1451543 1 NC_002937.3 hypothetical protein 1451543 2793508 DVU1375 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010594.1 1451313 D 882 CDS YP_010595.1 46579787 2793509 1451544..1453235 1 NC_002937.3 identified by similarity to SP:P00893; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit, biosynthetic type 1453235 ilvB-2 2793509 ilvB-2 Desulfovibrio vulgaris str. Hildenborough acetolactate synthase large subunit, biosynthetic type YP_010595.1 1451544 D 882 CDS YP_010596.1 46579788 2793510 1453245..1453733 1 NC_002937.3 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1453733 ilvH 2793510 ilvH Desulfovibrio vulgaris str. Hildenborough acetolactate synthase 3 regulatory subunit YP_010596.1 1453245 D 882 CDS YP_010597.1 46579789 2793511 1453855..1454850 1 NC_002937.3 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1454850 ilvC 2793511 ilvC Desulfovibrio vulgaris str. Hildenborough ketol-acid reductoisomerase YP_010597.1 1453855 D 882 CDS YP_010598.1 46579790 2795120 1454829..1454987 1 NC_002937.3 hypothetical protein 1454987 2795120 DVU1379 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010598.1 1454829 D 882 CDS YP_010599.1 46579791 2795121 complement(1455113..1455343) 1 NC_002937.3 hypothetical protein 1455343 2795121 DVU1380 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010599.1 1455113 R 882 CDS YP_010600.1 46579792 2795122 complement(1455324..1455539) 1 NC_002937.3 hypothetical protein 1455539 2795122 DVU1381 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010600.1 1455324 R 882 CDS YP_010601.1 46579793 2795123 complement(1455600..1455923) 1 NC_002937.3 selenoprotein; identified by match to protein family HMM PF01521; HesB family selenoprotein 1455923 2795123 DVU1382 Desulfovibrio vulgaris str. Hildenborough HesB family selenoprotein YP_010601.1 1455600 R 882 CDS YP_010602.1 46579794 2795124 1456016..1456441 1 NC_002937.3 hypothetical protein 1456441 2795124 DVU1383 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010602.1 1456016 D 882 CDS YP_010603.1 46579795 2795125 1456461..1456997 1 NC_002937.3 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1456997 pyrR 2795125 pyrR Desulfovibrio vulgaris str. Hildenborough bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_010603.1 1456461 D 882 CDS YP_010604.1 46579796 2795126 complement(1457129..1457230) 1 NC_002937.3 hypothetical protein 1457230 2795126 DVU1385 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010604.1 1457129 R 882 CDS YP_010605.1 46579797 2795127 complement(1457330..1458880) 1 NC_002937.3 hypothetical protein 1458880 2795127 DVU1386 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010605.1 1457330 R 882 CDS YP_010606.1 46579798 2795128 1459171..1460499 1 NC_002937.3 identified by similarity to OMNI:NTL01CJ01237; hypothetical protein 1460499 2795128 DVU1387 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010606.1 1459171 D 882 CDS YP_010607.1 46579799 2795129 1460672..1461427 1 NC_002937.3 identified by similarity to OMNI:SO1143; hypothetical protein 1461427 2795129 DVU1388 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010607.1 1460672 D 882 CDS YP_010608.1 46579800 2794789 complement(1461664..1462797) 1 NC_002937.3 hypothetical protein 1462797 2794789 DVU1389 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010608.1 1461664 R 882 CDS YP_010609.1 46579801 2794790 complement(1462982..1463449) 1 NC_002937.3 hypothetical protein 1463449 2794790 DVU1390 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010609.1 1462982 R 882 CDS YP_010610.1 46579802 2794791 1464007..1464384 1 NC_002937.3 hypothetical protein 1464384 2794791 DVU1391 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010610.1 1464007 D 882 CDS YP_010611.1 46579803 2794792 1464357..1465154 1 NC_002937.3 identified by match to protein family HMM PF00877; NLP/P60 family protein 1465154 2794792 DVU1392 Desulfovibrio vulgaris str. Hildenborough NLP/P60 family protein YP_010611.1 1464357 D 882 CDS YP_010612.1 46579804 2794793 1465199..1465402 1 NC_002937.3 hypothetical protein 1465402 2794793 DVU1393 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010612.1 1465199 D 882 CDS YP_010613.1 46579805 2794794 1465287..1465445 1 NC_002937.3 hypothetical protein 1465445 2794794 DVU1394 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010613.1 1465287 D 882 CDS YP_010614.1 46579806 2794795 1465417..1465638 1 NC_002937.3 identified by match to protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 1465638 2794795 DVU1395 Desulfovibrio vulgaris str. Hildenborough C4-type zinc finger DksA/TraR family protein YP_010614.1 1465417 D 882 CDS YP_010615.1 46579807 2794796 complement(1465764..1466021) 1 NC_002937.3 identified by similarity to OMNI:NTL02MT00799; hypothetical protein 1466021 2794796 DVU1396 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010615.1 1465764 R 882 CDS YP_010616.1 46579808 2794797 complement(1466087..1466626) 1 NC_002937.3 identified by similarity to GP:14326006; match to protein family HMM PF00210; bacterioferritin 1466626 bfr 2794797 bfr Desulfovibrio vulgaris str. Hildenborough bacterioferritin YP_010616.1 1466087 R 882 CDS YP_010617.1 46579809 2794798 complement(1467022..1467864) 1 NC_002937.3 identified by match to protein family HMM PF00665; ISDvu2, transposase OrfB 1467864 2794798 DVU1398 Desulfovibrio vulgaris str. Hildenborough ISDvu2, transposase OrfB YP_010617.1 1467022 R 882 CDS YP_010618.1 46579810 2794651 complement(1467861..1468259) 1 NC_002937.3 identified by match to protein family HMM PF01527; ISDvu2, transposase OrfA 1468259 2794651 DVU1399 Desulfovibrio vulgaris str. Hildenborough ISDvu2, transposase OrfA YP_010618.1 1467861 R 882 CDS YP_010619.1 46579811 2794652 1468349..1470241 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1470241 2794652 DVU1400 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_010619.1 1468349 D 882 CDS YP_010620.1 46579812 2794653 complement(1470407..1471372) 1 NC_002937.3 identified by match to protein family HMM PF03547; hypothetical protein 1471372 2794653 DVU1401 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010620.1 1470407 R 882 CDS YP_010621.1 46579813 2794654 1471525..1472520 1 NC_002937.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1472520 2794654 DVU1402 Desulfovibrio vulgaris str. Hildenborough LysR family transcriptional regulator YP_010621.1 1471525 D 882 CDS YP_010622.1 46579814 2794655 complement(1472525..1473028) 1 NC_002937.3 cob(I)alamin adenosyltransferase 1473028 cobO 2794655 cobO Desulfovibrio vulgaris str. Hildenborough cob(I)alamin adenosyltransferase YP_010622.1 1472525 R 882 CDS YP_010623.1 46579815 2794656 complement(1473006..1474112) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1474112 2794656 DVU1404 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_010623.1 1473006 R 882 CDS YP_010624.1 46579816 2794657 complement(1474096..1474599) 1 NC_002937.3 hypothetical protein 1474599 2794657 DVU1405 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010624.1 1474096 R 882 CDS YP_010625.1 46579817 2794658 1474610..1475662 1 NC_002937.3 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1475662 purM 2794658 purM Desulfovibrio vulgaris str. Hildenborough phosphoribosylaminoimidazole synthetase YP_010625.1 1474610 D 882 CDS YP_010626.1 46579818 2794659 complement(1475979..1477454) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1477454 2794659 DVU1407 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_010626.1 1475979 R 882 CDS YP_010627.1 46579819 2794660 1477612..1477914 1 NC_002937.3 hypothetical protein 1477914 2794660 DVU1408 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010627.1 1477612 D 882 CDS YP_010628.1 46579820 2794661 1477932..1478396 1 NC_002937.3 hypothetical protein 1478396 2794661 DVU1409 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010628.1 1477932 D 882 CDS YP_010629.1 46579821 2794954 complement(1478673..1479545) 1 NC_002937.3 identified by similarity to OMNI:NT01MC3424; hypothetical protein 1479545 2794954 DVU1410 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010629.1 1478673 R 882 CDS YP_010630.1 46579822 2794955 1480019..1481308 1 NC_002937.3 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1481308 thiC 2794955 thiC Desulfovibrio vulgaris str. Hildenborough thiamine biosynthesis protein ThiC YP_010630.1 1480019 D 882 CDS YP_010631.1 46579823 2794956 complement(1481630..1482610) 1 NC_002937.3 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 1482610 2794956 DVU1412 Desulfovibrio vulgaris str. Hildenborough glycerate dehydrogenase YP_010631.1 1481630 R 882 CDS YP_010632.1 46579824 2794957 1482724..1484016 1 NC_002937.3 identified by similarity to GP:3128261; hypothetical protein 1484016 2794957 DVU1413 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010632.1 1482724 D 882 CDS YP_010633.1 46579825 2794958 1484048..1487041 1 NC_002937.3 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1487041 2794958 DVU1414 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_010633.1 1484048 D 882 CDS YP_010634.1 46579826 2794959 1487077..1490661 1 NC_002937.3 identified by match to protein family HMM PF05170; AsmA family protein 1490661 2794959 DVU1415 Desulfovibrio vulgaris str. Hildenborough AsmA family protein YP_010634.1 1487077 D 882 CDS YP_010635.1 46579827 2794960 complement(1488714..1489691) 1 NC_002937.3 hypothetical protein 1489691 2794960 DVU1416 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010635.1 1488714 R 882 CDS YP_010636.1 46579828 2794961 complement(1490796..1491002) 1 NC_002937.3 hypothetical protein 1491002 2794961 DVU1417 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010636.1 1490796 R 882 CDS YP_010637.1 46579829 2794962 1491108..1492847 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1492847 2794962 DVU1418 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_010637.1 1491108 D 882 CDS YP_010638.1 46579830 2794963 1492844..1494223 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 1494223 2794963 DVU1419 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_010638.1 1492844 D 882 CDS YP_010639.1 46579831 2794681 1494284..1494655 1 NC_002937.3 identified by match to protein family HMM PF01627; Hpt domain-containing protein 1494655 2794681 DVU1420 Desulfovibrio vulgaris str. Hildenborough Hpt domain-containing protein YP_010639.1 1494284 D 882 CDS YP_010640.1 46579832 2794682 complement(1494855..1495316) 1 NC_002937.3 hypothetical protein 1495316 2794682 DVU1421 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010640.1 1494855 R 882 CDS YP_010641.1 46579833 2794683 complement(1495381..1496454) 1 NC_002937.3 identified by match to protein family HMM PF00691; OmpA family protein 1496454 2794683 DVU1422 Desulfovibrio vulgaris str. Hildenborough OmpA family protein YP_010641.1 1495381 R 882 CDS YP_010642.1 46579834 2794684 complement(1496557..1497927) 1 NC_002937.3 identified by similarity to SP:O34324; match to protein family HMM PF00070; match to protein family HMM PF02852; 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase 1497927 lpdA 2794684 lpdA Desulfovibrio vulgaris str. Hildenborough 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase YP_010642.1 1496557 R 882 CDS YP_010643.1 46579835 2794685 complement(1497917..1499362) 1 NC_002937.3 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1499362 gcvPB 2794685 gcvPB Desulfovibrio vulgaris str. Hildenborough glycine dehydrogenase subunit 2 YP_010643.1 1497917 R 882 CDS YP_010644.1 46579836 2794686 complement(1499359..1500690) 1 NC_002937.3 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1500690 gcvPA 2794686 gcvPA Desulfovibrio vulgaris str. Hildenborough glycine dehydrogenase subunit 1 YP_010644.1 1499359 R 882 CDS YP_010645.1 46579837 2794687 complement(1500705..1501088) 1 NC_002937.3 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1501088 gcvH 2794687 gcvH Desulfovibrio vulgaris str. Hildenborough glycine cleavage system protein H YP_010645.1 1500705 R 882 CDS YP_010646.1 46579838 2794688 complement(1501280..1501693) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 1501693 2794688 DVU1427 Desulfovibrio vulgaris str. Hildenborough response regulator YP_010646.1 1501280 R 882 CDS YP_010647.1 46579839 2794689 complement(1501801..1503456) 1 NC_002937.3 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1503456 pgm 2794689 pgm Desulfovibrio vulgaris str. Hildenborough phosphoglucomutase YP_010647.1 1501801 R 882 CDS YP_010648.1 46579840 2794690 complement(1503735..1504835) 1 NC_002937.3 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1504835 ychF 2794690 ychF Desulfovibrio vulgaris str. Hildenborough GTP-dependent nucleic acid-binding protein EngD YP_010648.1 1503735 R 882 CDS YP_010649.1 46579841 2794691 complement(1505249..1507855) 1 NC_002937.3 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1507855 2794691 DVU1430 Desulfovibrio vulgaris str. Hildenborough M16 family peptidase YP_010649.1 1505249 R 882 CDS YP_010650.1 46579842 2795157 1508049..1510244 1 NC_002937.3 identified by match to protein family HMM PF01627; match to protein family HMM PF01740; hpt domain-containing protein/STAS domain-containing protein 1510244 2795157 DVU1431 Desulfovibrio vulgaris str. Hildenborough hpt domain-containing protein/STAS domain-containing protein YP_010650.1 1508049 D 882 CDS YP_010651.1 46579843 2795158 complement(1510471..1513065) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1513065 2795158 DVU1432 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_010651.1 1510471 R 882 CDS YP_010652.1 46579844 2795159 1513064..1513255 1 NC_002937.3 hypothetical protein 1513255 2795159 DVU1433 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010652.1 1513064 D 882 CDS YP_010653.1 46579845 2795160 complement(1513301..1513666) 1 NC_002937.3 hypothetical protein 1513666 2795160 DVU1434 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010653.1 1513301 R 882 CDS YP_010654.1 46579846 2795161 complement(1513729..1514913) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA01784; hypothetical protein 1514913 2795161 DVU1435 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010654.1 1513729 R 882 CDS YP_010655.1 46579847 2795162 complement(1515050..1515145) 1 NC_002937.3 hypothetical protein 1515145 2795162 DVU1436 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010655.1 1515050 R 882 CDS YP_010656.1 46579848 2795163 1515334..1515432 1 NC_002937.3 hypothetical protein 1515432 2795163 DVU1437 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010656.1 1515334 D 882 CDS YP_010657.1 46579849 2795164 complement(1515410..1516474) 1 NC_002937.3 identified by match to protein family HMM PF01656; cobyrinic acid a,c-diamide synthase 1516474 2795164 DVU1438 Desulfovibrio vulgaris str. Hildenborough cobyrinic acid a,c-diamide synthase YP_010657.1 1515410 R 882 CDS YP_010658.1 46579850 2795165 complement(1516553..1516705) 1 NC_002937.3 hypothetical protein 1516705 2795165 DVU1439 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010658.1 1516553 R 882 CDS YP_010659.1 46579851 2795166 1516953..1517714 1 NC_002937.3 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1517714 rnc 2795166 rnc Desulfovibrio vulgaris str. Hildenborough ribonuclease III YP_010659.1 1516953 D 882 CDS YP_010660.1 46579852 2794568 complement(1517815..1518711) 1 NC_002937.3 identified by similarity to SP:P21990; match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 1518711 2794568 DVU1441 Desulfovibrio vulgaris str. Hildenborough flagellin YP_010660.1 1517815 R 882 CDS YP_010661.1 46579853 2794569 1518983..1519357 1 NC_002937.3 identified by similarity to GP:2384651; flagellin FlaG 1519357 2794569 DVU1442 Desulfovibrio vulgaris str. Hildenborough flagellin FlaG YP_010661.1 1518983 D 882 CDS YP_010662.1 46579854 2794570 complement(1519825..1521519) 1 NC_002937.3 identified by similarity to SP:O07884; match to protein family HMM PF00460; flagellar hook protein FlgE 1521519 flgE 2794570 flgE Desulfovibrio vulgaris str. Hildenborough flagellar hook protein FlgE YP_010662.1 1519825 R 882 CDS YP_010663.1 46579855 2794571 complement(1521577..1522374) 1 NC_002937.3 identified by similarity to SP:P16321; match to protein family HMM PF03963; basal-body rod modification protein FlgD 1522374 flgD 2794571 flgD Desulfovibrio vulgaris str. Hildenborough basal-body rod modification protein FlgD YP_010663.1 1521577 R 882 CDS YP_010664.1 46579856 2794572 complement(1522387..1523982) 1 NC_002937.3 identified by match to protein family HMM PF02120; flagellar hook-length control domain-containing protein 1523982 2794572 DVU1445 Desulfovibrio vulgaris str. Hildenborough flagellar hook-length control domain-containing protein YP_010664.1 1522387 R 882 CDS YP_010665.1 46579857 2794573 complement(1524125..1525528) 1 NC_002937.3 identified by match to protein family HMM PF01075; heptosyltransferase 1525528 2794573 DVU1446 Desulfovibrio vulgaris str. Hildenborough heptosyltransferase YP_010665.1 1524125 R 882 CDS YP_010666.1 46579858 2794574 complement(1525525..1527234) 1 NC_002937.3 CgeB family protein 1527234 2794574 DVU1447 Desulfovibrio vulgaris str. Hildenborough CgeB family protein YP_010666.1 1525525 R 882 CDS YP_010667.1 46579859 2794575 complement(1527231..1528367) 1 NC_002937.3 identified by similarity to OMNI:TM0735; match to protein family HMM PF03961; hypothetical protein 1528367 2794575 DVU1448 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010667.1 1527231 R 882 CDS YP_010668.1 46579860 2794576 complement(1528388..1528732) 1 NC_002937.3 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor 1528732 2794576 DVU1449 Desulfovibrio vulgaris str. Hildenborough anti-anti-sigma factor YP_010668.1 1528388 R 882 CDS YP_010669.1 46579861 2794577 complement(1528690..1529130) 1 NC_002937.3 identified by similarity to SP:P70878; match to protein family HMM PF02518; anti-sigma factor 1529130 2794577 DVU1450 Desulfovibrio vulgaris str. Hildenborough anti-sigma factor YP_010669.1 1528690 R 882 CDS YP_010670.1 46579862 2794817 complement(1529130..1530299) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 1530299 2794817 DVU1451 Desulfovibrio vulgaris str. Hildenborough response regulator YP_010670.1 1529130 R 882 CDS YP_010671.1 46579863 2794818 complement(1530262..1530750) 1 NC_002937.3 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1530750 dtd 2794818 dtd Desulfovibrio vulgaris str. Hildenborough D-tyrosyl-tRNA(Tyr) deacylase YP_010671.1 1530262 R 882 CDS YP_010672.1 46579864 2794819 complement(1530755..1532449) 1 NC_002937.3 identified by similarity to SP:P94547; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase 1532449 fadD 2794819 fadD Desulfovibrio vulgaris str. Hildenborough long-chain-fatty-acid--CoA ligase YP_010672.1 1530755 R 882 CDS YP_010673.1 46579865 2794820 complement(1532607..1533794) 1 NC_002937.3 identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1533794 ispD 2794820 ispD Desulfovibrio vulgaris str. Hildenborough 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_010673.1 1532607 R 882 CDS YP_010674.1 46579866 2794822 complement(1534209..1534952) 1 NC_002937.3 identified by similarity to OMNI:NTL01CJ00668; match to protein family HMM PF02591; hypothetical protein 1534952 2794822 DVU1455 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010674.1 1534209 R 882 CDS YP_010675.1 46579867 2794823 complement(1534993..1536003) 1 NC_002937.3 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; NIF3 family protein 1536003 2794823 DVU1456 Desulfovibrio vulgaris str. Hildenborough NIF3 family protein YP_010675.1 1534993 R 882 CDS YP_010676.1 46579868 2794825 complement(1536247..1537176) 1 NC_002937.3 identified by similarity to SP:Q05741; match to protein family HMM PF00070; thioredoxin reductase 1537176 2794825 DVU1457 Desulfovibrio vulgaris str. Hildenborough thioredoxin reductase YP_010676.1 1536247 R 882 CDS YP_010677.2 304569698 2794876 complement(1537477..1538223) 1 NC_002937.3 identified by similarity to SP:P07800; chemotaxis protein CheZ 1538223 2794876 DVU1458 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheZ YP_010677.2 1537477 R 882 CDS YP_010678.1 46579870 2794877 complement(1538486..1539658) 1 NC_002937.3 identified by match to protein family HMM PF01171; hypothetical protein 1539658 2794877 DVU1459 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010678.1 1538486 R 882 CDS YP_010679.1 46579871 2794878 complement(1539694..1540029) 1 NC_002937.3 hypothetical protein 1540029 2794878 DVU1460 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010679.1 1539694 R 882 CDS YP_010680.1 46579872 2794879 complement(1540047..1541369) 1 NC_002937.3 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1541369 hemA 2794879 hemA Desulfovibrio vulgaris str. Hildenborough glutamyl-tRNA reductase YP_010680.1 1540047 R 882 CDS YP_010681.1 46579873 2794880 complement(1541371..1542102) 1 NC_002937.3 identified by match to protein family HMM PF01578; cytochrome c assembly protein 1542102 2794880 DVU1462 Desulfovibrio vulgaris str. Hildenborough cytochrome c assembly protein YP_010681.1 1541371 R 882 CDS YP_010682.1 46579874 2794881 complement(1542188..1542865) 1 NC_002937.3 identified by match to protein family HMM TIGR01470; siroheme synthase 1542865 2794881 DVU1463 Desulfovibrio vulgaris str. Hildenborough siroheme synthase YP_010682.1 1542188 R 882 CDS YP_010683.1 46579875 2794882 1542988..1544223 1 NC_002937.3 identified by match to protein family HMM PF01075; heptosyltransferase 1544223 2794882 DVU1464 Desulfovibrio vulgaris str. Hildenborough heptosyltransferase YP_010683.1 1542988 D 882 CDS YP_010684.2 304569699 2794883 1544267..1545595 1 NC_002937.3 CgeB family protein 1545595 2794883 DVU1465 Desulfovibrio vulgaris str. Hildenborough CgeB family protein YP_010684.2 1544267 D 882 CDS YP_010685.1 46579877 2794884 complement(1545702..1546628) 1 NC_002937.3 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1546628 argB 2794884 argB Desulfovibrio vulgaris str. Hildenborough acetylglutamate kinase YP_010685.1 1545702 R 882 CDS YP_010686.1 46579878 2794885 complement(1546644..1547969) 1 NC_002937.3 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1547969 hslU 2794885 hslU Desulfovibrio vulgaris str. Hildenborough ATP-dependent protease ATP-binding subunit HslU YP_010686.1 1546644 R 882 CDS YP_010687.1 46579879 2794137 complement(1548081..1549529) 1 NC_002937.3 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; peptidase/PDZ domain-containing protein 1549529 2794137 DVU1468 Desulfovibrio vulgaris str. Hildenborough peptidase/PDZ domain-containing protein YP_010687.1 1548081 R 882 CDS YP_010688.1 46579880 2794138 complement(1549690..1551153) 1 NC_002937.3 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1551153 rpsA 2794138 rpsA Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S1 YP_010688.1 1549690 R 882 CDS YP_010689.1 46579881 2794139 1551307..1551591 1 NC_002937.3 identified by similarity to SP:P39159; match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase C 1551591 ppiC 2794139 ppiC Desulfovibrio vulgaris str. Hildenborough peptidyl-prolyl cis-trans isomerase C YP_010689.1 1551307 D 882 CDS YP_010690.2 304569700 2794140 1551664..1552092 1 NC_002937.3 identified by match to protein family HMM PF00011; HSP20 family protein 1552092 2794140 DVU1471 Desulfovibrio vulgaris str. Hildenborough HSP20 family protein YP_010690.2 1551664 D 882 CDS YP_010691.2 304569701 2794141 1552089..1554554 1 NC_002937.3 identified by match to protein family HMM PF05362; ATP-dependent protease 1554554 2794141 DVU1472 Desulfovibrio vulgaris str. Hildenborough ATP-dependent protease YP_010691.2 1552089 D 882 CDS YP_010692.1 46579884 2794142 complement(1554683..1554898) 1 NC_002937.3 hypothetical protein 1554898 2794142 DVU1473 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010692.1 1554683 R 882 CDS YP_010693.1 46579885 2794143 1555168..1555281 1 NC_002937.3 hypothetical protein 1555281 2794143 DVU1474 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010693.1 1555168 D 882 CDS YP_010694.1 46579886 2794144 1555564..1556241 1 NC_002937.3 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; PhoU family protein 1556241 2794144 DVU1475 Desulfovibrio vulgaris str. Hildenborough PhoU family protein YP_010694.1 1555564 D 882 CDS YP_010695.1 46579887 2794145 complement(1556492..1556701) 1 NC_002937.3 hypothetical protein 1556701 2794145 DVU1476 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010695.1 1556492 R 882 CDS YP_010696.1 46579888 2794935 1557005..1557733 1 NC_002937.3 hypothetical protein 1557733 2794935 DVU1477 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010696.1 1557005 D 882 CDS YP_010697.1 46579889 2794936 1557759..1558655 1 NC_002937.3 hypothetical protein 1558655 2794936 DVU1478 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010697.1 1557759 D 882 CDS YP_010698.1 46579890 2794937 1558664..1559671 1 NC_002937.3 identified by similarity to GP:15025573; hypothetical protein 1559671 2794937 DVU1479 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010698.1 1558664 D 882 CDS YP_010699.1 46579891 2794938 1559712..1560071 1 NC_002937.3 identified by similarity to OMNI:NTL01MM2929; hypothetical protein 1560071 2794938 DVU1480 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010699.1 1559712 D 882 CDS YP_010700.1 46579892 2794939 complement(1560130..1560939) 1 NC_002937.3 identified by match to protein family HMM PF00565; nuclease domain-containing protein 1560939 2794939 DVU1481 Desulfovibrio vulgaris str. Hildenborough nuclease domain-containing protein YP_010700.1 1560130 R 882 CDS YP_010701.1 46579893 2794940 complement(1560945..1561235) 1 NC_002937.3 hypothetical protein 1561235 2794940 DVU1482 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010701.1 1560945 R 882 CDS YP_010702.1 46579894 2794941 complement(1561263..1561772) 1 NC_002937.3 tail fiber assembly protein 1561772 2794941 DVU1483 Desulfovibrio vulgaris str. Hildenborough tail fiber assembly protein YP_010702.1 1561263 R 882 CDS YP_010703.1 46579895 2794942 complement(1561765..1562103) 1 NC_002937.3 hypothetical protein 1562103 2794942 DVU1484 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010703.1 1561765 R 882 CDS YP_010704.1 46579896 2794943 complement(1562106..1562741) 1 NC_002937.3 hypothetical protein 1562741 2794943 DVU1485 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010704.1 1562106 R 882 CDS YP_010705.1 46579897 2794420 complement(1562738..1565050) 1 NC_002937.3 tail fiber protein, truncation 1565050 2794420 DVU1486 Desulfovibrio vulgaris str. Hildenborough tail fiber protein, truncation YP_010705.1 1562738 R 882 CDS YP_010706.1 46579898 2794421 complement(1565472..1565900) 1 NC_002937.3 hypothetical protein 1565900 2794421 DVU1487 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010706.1 1565472 R 882 CDS YP_010707.1 46579899 2794422 complement(1565890..1566795) 1 NC_002937.3 minor tail protein 1566795 2794422 DVU1488 Desulfovibrio vulgaris str. Hildenborough minor tail protein YP_010707.1 1565890 R 882 CDS YP_010708.1 46579900 2794423 complement(1566799..1567149) 1 NC_002937.3 hypothetical protein 1567149 2794423 DVU1489 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010708.1 1566799 R 882 CDS YP_010709.1 46579901 2794424 complement(1567152..1569950) 1 NC_002937.3 tail tape measure protein 1569950 2794424 DVU1490 Desulfovibrio vulgaris str. Hildenborough tail tape measure protein YP_010709.1 1567152 R 882 CDS YP_010710.1 46579902 2794425 1570123..1570305 1 NC_002937.3 identified by similarity to OMNI:NTL01PF1323; hypothetical protein 1570305 2794425 DVU1491 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010710.1 1570123 D 882 CDS YP_003858610.1 304569743 9714853 1570354..1570758 1 NC_002937.3 hypothetical protein 1570758 9714853 DVU4002 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858610.1 1570354 D 882 CDS YP_010712.1 46579904 2794427 complement(1571178..1571561) 1 NC_002937.3 hypothetical protein 1571561 2794427 DVU1493 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010712.1 1571178 R 882 CDS YP_010713.1 46579905 2794428 complement(1571570..1572733) 1 NC_002937.3 hypothetical protein 1572733 2794428 DVU1494 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010713.1 1571570 R 882 CDS YP_010714.1 46579906 2794429 complement(1572745..1573089) 1 NC_002937.3 hypothetical protein 1573089 2794429 DVU1495 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010714.1 1572745 R 882 CDS YP_010715.1 46579907 2794430 complement(1573134..1573631) 1 NC_002937.3 hypothetical protein 1573631 2794430 DVU1496 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010715.1 1573134 R 882 CDS YP_010716.1 46579908 2793648 complement(1573624..1573950) 1 NC_002937.3 identified by match to protein family HMM TIGR01563; head-tail adaptor 1573950 2793648 DVU1497 Desulfovibrio vulgaris str. Hildenborough head-tail adaptor YP_010716.1 1573624 R 882 CDS YP_010717.1 46579909 2793649 complement(1573950..1574507) 1 NC_002937.3 identified by similarity to GP:17484030; hypothetical protein 1574507 2793649 DVU1498 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010717.1 1573950 R 882 CDS YP_010718.1 46579910 2793650 complement(1574511..1574780) 1 NC_002937.3 hypothetical protein 1574780 2793650 DVU1499 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010718.1 1574511 R 882 CDS YP_010719.1 46579911 2793651 complement(1574826..1576022) 1 NC_002937.3 identified by match to protein family HMM TIGR01554; HK97 family major capsid protein 1576022 2793651 DVU1500 Desulfovibrio vulgaris str. Hildenborough HK97 family major capsid protein YP_010719.1 1574826 R 882 CDS YP_010720.1 46579912 2793652 complement(1576227..1576961) 1 NC_002937.3 identified by match to protein family HMM PF00574; ClpP protease 1576961 2793652 DVU1501 Desulfovibrio vulgaris str. Hildenborough ClpP protease YP_010720.1 1576227 R 882 CDS YP_010721.1 46579913 2793653 complement(1576954..1578213) 1 NC_002937.3 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; HK97 family portal protein 1578213 2793653 DVU1502 Desulfovibrio vulgaris str. Hildenborough HK97 family portal protein YP_010721.1 1576954 R 882 CDS YP_010722.1 46579914 2793654 complement(1578213..1579910) 1 NC_002937.3 identified by match to protein family HMM PF03354; terminase large subunit 1579910 2793654 DVU1503 Desulfovibrio vulgaris str. Hildenborough terminase large subunit YP_010722.1 1578213 R 882 CDS YP_010723.1 46579915 2793655 complement(1579915..1580382) 1 NC_002937.3 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; terminase small subunit 1580382 2793655 DVU1504 Desulfovibrio vulgaris str. Hildenborough terminase small subunit YP_010723.1 1579915 R 882 CDS YP_010724.1 46579916 2793656 complement(1580466..1580864) 1 NC_002937.3 identified by match to protein family HMM PF01844; holin 1580864 2793656 DVU1505 Desulfovibrio vulgaris str. Hildenborough holin YP_010724.1 1580466 R 882 CDS YP_010725.1 46579917 2793657 complement(1580884..1581132) 1 NC_002937.3 hypothetical protein 1581132 2793657 DVU1506 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010725.1 1580884 R 882 CDS YP_010726.1 46579918 2793658 complement(1581129..1581479) 1 NC_002937.3 hypothetical protein 1581479 2793658 DVU1507 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010726.1 1581129 R 882 CDS YP_010727.1 46579919 2793946 complement(1581479..1581886) 1 NC_002937.3 identified by similarity to GP:27550078; hypothetical protein 1581886 2793946 DVU1508 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010727.1 1581479 R 882 CDS YP_010728.1 46579920 2793947 complement(1582050..1582439) 1 NC_002937.3 identified by similarity to GP:21913207; hypothetical protein 1582439 2793947 DVU1509 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010728.1 1582050 R 882 CDS YP_010729.1 46579921 2793948 complement(1582432..1582995) 1 NC_002937.3 hypothetical protein 1582995 2793948 DVU1510 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010729.1 1582432 R 882 CDS YP_010730.1 46579922 2793949 complement(1583104..1583334) 1 NC_002937.3 hypothetical protein 1583334 2793949 DVU1511 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010730.1 1583104 R 882 CDS YP_010731.1 46579923 2793950 complement(1583337..1583597) 1 NC_002937.3 hypothetical protein 1583597 2793950 DVU1512 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010731.1 1583337 R 882 CDS YP_010732.1 46579924 2793951 complement(1583584..1584078) 1 NC_002937.3 identified by similarity to GP:21202981; hypothetical protein 1584078 2793951 DVU1513 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010732.1 1583584 R 882 CDS YP_010733.1 46579925 2793952 complement(1584247..1585464) 1 NC_002937.3 hypothetical protein 1585464 2793952 DVU1514 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010733.1 1584247 R 882 CDS YP_010734.1 46579926 2793953 complement(1585461..1586924) 1 NC_002937.3 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; type II DNA modification methyltransferase 1586924 2793953 DVU1515 Desulfovibrio vulgaris str. Hildenborough type II DNA modification methyltransferase YP_010734.1 1585461 R 882 CDS YP_010735.1 46579927 2793954 complement(1587127..1587486) 1 NC_002937.3 hypothetical protein 1587486 2793954 DVU1516 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010735.1 1587127 R 882 CDS YP_010736.1 46579928 2793955 complement(1587483..1587896) 1 NC_002937.3 transcriptional regulator cII 1587896 2793955 DVU1517 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator cII YP_010736.1 1587483 R 882 CDS YP_010737.1 46579929 2793956 complement(1588107..1588397) 1 NC_002937.3 identified by match to protein family HMM PF01381; transcriptional regulator cI, truncation 1588397 2793956 DVU1518 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator cI, truncation YP_010737.1 1588107 R 882 CDS YP_010738.1 46579930 2793936 1588433..1589107 1 NC_002937.3 identified by match to protein family HMM PF00717; transcriptional regulator 1589107 2793936 DVU1519 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_010738.1 1588433 D 882 CDS YP_010739.1 46579931 2793937 1589165..1590151 1 NC_002937.3 hypothetical protein 1590151 2793937 DVU1520 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010739.1 1589165 D 882 CDS YP_010740.1 46579932 2793938 1590141..1590320 1 NC_002937.3 hypothetical protein 1590320 2793938 DVU1521 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010740.1 1590141 D 882 CDS YP_010741.1 46579933 2793939 1590750..1591145 1 NC_002937.3 hypothetical protein 1591145 2793939 DVU1522 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010741.1 1590750 D 882 CDS YP_010742.1 46579934 2793940 1591191..1592219 1 NC_002937.3 hypothetical protein 1592219 2793940 DVU1523 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010742.1 1591191 D 882 CDS YP_010743.1 46579935 2793941 1592222..1593118 1 NC_002937.3 identified by similarity to GP:13491641; hypothetical protein 1593118 2793941 DVU1524 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010743.1 1592222 D 882 CDS YP_010744.1 46579936 2793942 1593138..1594130 1 NC_002937.3 identified by similarity to OMNI:NTL02MA1432; hypothetical protein 1594130 2793942 DVU1525 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010744.1 1593138 D 882 CDS YP_010745.1 46579937 2793943 complement(1594494..1594712) 1 NC_002937.3 hypothetical protein 1594712 2793943 DVU1526 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010745.1 1594494 R 882 CDS YP_010746.1 46579938 2793944 complement(1594709..1595902) 1 NC_002937.3 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 1595902 2793944 DVU1527 Desulfovibrio vulgaris str. Hildenborough phage integrase site specific recombinase YP_010746.1 1594709 R 882 CDS YP_010747.1 46579939 2793813 complement(1596516..1597001) 1 NC_002937.3 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 1597001 2793813 DVU1528 Desulfovibrio vulgaris str. Hildenborough cytidine/deoxycytidylate deaminase YP_010747.1 1596516 R 882 CDS YP_010748.1 46579940 2793814 complement(1597222..1597878) 1 NC_002937.3 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; decarboxylase 1597878 2793814 DVU1529 Desulfovibrio vulgaris str. Hildenborough decarboxylase YP_010748.1 1597222 R 882 CDS YP_010749.1 46579941 2793815 1598015..1599625 1 NC_002937.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase 1599625 2793815 DVU1530 Desulfovibrio vulgaris str. Hildenborough metallo-beta-lactamase YP_010749.1 1598015 D 882 CDS YP_010750.1 46579942 2793816 1599751..1600323 1 NC_002937.3 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 1600323 2793816 DVU1531 Desulfovibrio vulgaris str. Hildenborough methyltransferase YP_010750.1 1599751 D 882 CDS YP_010751.1 46579943 2793817 1600299..1600859 1 NC_002937.3 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1600859 coaD 2793817 coaD Desulfovibrio vulgaris str. Hildenborough phosphopantetheine adenylyltransferase YP_010751.1 1600299 D 882 CDS YP_010752.1 46579944 2793818 1600856..1601785 1 NC_002937.3 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1601785 miaA 2793818 miaA Desulfovibrio vulgaris str. Hildenborough tRNA delta(2)-isopentenylpyrophosphate transferase YP_010752.1 1600856 D 882 CDS YP_010753.1 46579945 2793819 1601935..1602447 1 NC_002937.3 identified by similarity to OMNI:NTL01TV0482; match to protein family HMM PF04143; hypothetical protein 1602447 2793819 DVU1534 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010753.1 1601935 D 882 CDS YP_010754.1 46579946 2793820 1602447..1602968 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0071; hypothetical protein 1602968 2793820 DVU1535 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010754.1 1602447 D 882 CDS YP_010755.1 46579947 2793821 1603093..1604229 1 NC_002937.3 identified by match to protein family HMM PF01464; Slt family transglycosylase 1604229 2793821 DVU1536 Desulfovibrio vulgaris str. Hildenborough Slt family transglycosylase YP_010755.1 1603093 D 882 CDS YP_010756.1 46579948 2793822 1604359..1604925 1 NC_002937.3 identified by match to protein family HMM PF03938; lipoprotein 1604925 2793822 DVU1537 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010756.1 1604359 D 882 CDS YP_010757.1 46579949 2793688 complement(1605189..1605713) 1 NC_002937.3 hypothetical protein 1605713 2793688 DVU1538 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010757.1 1605189 R 882 CDS YP_010758.1 46579950 2793689 complement(1605816..1606799) 1 NC_002937.3 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 1606799 glpX 2793689 glpX Desulfovibrio vulgaris str. Hildenborough fructose 1,6-bisphosphatase II YP_010758.1 1605816 R 882 CDS YP_010759.1 46579951 2793690 complement(1606991..1607845) 1 NC_002937.3 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1607845 purU 2793690 purU Desulfovibrio vulgaris str. Hildenborough formyltetrahydrofolate deformylase YP_010759.1 1606991 R 882 CDS YP_010760.1 46579952 2793691 complement(1607951..1608352) 1 NC_002937.3 hypothetical protein 1608352 2793691 DVU1541 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010760.1 1607951 R 882 CDS YP_010761.1 46579953 2793692 complement(1608530..1608757) 1 NC_002937.3 hypothetical protein 1608757 2793692 DVU1542 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010761.1 1608530 R 882 CDS YP_010762.1 46579954 2793693 1608966..1611509 1 NC_002937.3 identified by similarity to SP:P37024; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970; ATP-dependent helicase HrpB 1611509 hrpB 2793693 hrpB Desulfovibrio vulgaris str. Hildenborough ATP-dependent helicase HrpB YP_010762.1 1608966 D 882 CDS YP_010763.1 46579955 2793694 complement(1611814..1614255) 1 NC_002937.3 identified by similarity to SP:P77338; match to protein family HMM PF00924; mechanosensitive ion channel family protein 1614255 2793694 DVU1544 Desulfovibrio vulgaris str. Hildenborough mechanosensitive ion channel family protein YP_010763.1 1611814 R 882 CDS YP_010764.1 46579956 2793695 complement(1614477..1621721) 1 NC_002937.3 identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612; hemolysin-type calcium-binding repeat family protein 1621721 2793695 DVU1545 Desulfovibrio vulgaris str. Hildenborough hemolysin-type calcium-binding repeat family protein YP_010764.1 1614477 R 882 CDS YP_010765.1 46579957 2793696 1621692..1622027 1 NC_002937.3 hypothetical protein 1622027 2793696 DVU1546 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010765.1 1621692 D 882 CDS YP_010766.1 46579958 2793697 complement(1622188..1623813) 1 NC_002937.3 identified by match to protein family HMM PF00785; match to protein family HMM TIGR00229; sensory box protein 1623813 2793697 DVU1547 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_010766.1 1622188 R 882 CDS YP_010767.1 46579959 2793698 1623964..1625178 1 NC_002937.3 identified by match to protein family HMM PF03349; OmpP1/FadL/TodX family outer membrane transporter 1625178 2793698 DVU1548 Desulfovibrio vulgaris str. Hildenborough OmpP1/FadL/TodX family outer membrane transporter YP_010767.1 1623964 D 882 CDS YP_010768.1 46579960 2794865 1625478..1626230 1 NC_002937.3 identified by similarity to OMNI:NTL01SS00054; hypothetical protein 1626230 2794865 DVU1549 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010768.1 1625478 D 882 CDS YP_010769.1 46579961 2794866 complement(1626312..1626968) 1 NC_002937.3 identified by match to protein family HMM PF00300; phosphoglycerate mutase 1626968 2794866 DVU1550 Desulfovibrio vulgaris str. Hildenborough phosphoglycerate mutase YP_010769.1 1626312 R 882 CDS YP_010770.1 46579962 2794867 complement(1627026..1628432) 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 1628432 2794867 DVU1551 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_010770.1 1627026 R 882 CDS YP_010771.1 46579963 2794868 complement(1628591..1629721) 1 NC_002937.3 identified by similarity to OMNI:NTL02SC5917; match to protein family HMM PF02625; hypothetical protein 1629721 2794868 DVU1552 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010771.1 1628591 R 882 CDS YP_010772.1 46579964 2794869 complement(1629739..1631088) 1 NC_002937.3 AMP-binding protein 1631088 2794869 DVU1553 Desulfovibrio vulgaris str. Hildenborough AMP-binding protein YP_010772.1 1629739 R 882 CDS YP_010773.1 46579965 2794870 complement(1631085..1632716) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1632716 2794870 DVU1554 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_010773.1 1631085 R 882 CDS YP_010774.1 46579966 2794871 complement(1632716..1633168) 1 NC_002937.3 hypothetical protein 1633168 2794871 DVU1555 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010774.1 1632716 R 882 CDS YP_010775.1 46579967 2794872 complement(1633173..1634066) 1 NC_002937.3 hypothetical protein 1634066 2794872 DVU1556 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010775.1 1633173 R 882 CDS YP_010776.1 46579968 2794873 complement(1634075..1634290) 1 NC_002937.3 hypothetical protein 1634290 2794873 DVU1557 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010776.1 1634075 R 882 CDS YP_010777.1 46579969 2794874 complement(1634287..1636680) 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; hypothetical protein 1636680 2794874 DVU1558 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010777.1 1634287 R 882 CDS YP_010778.1 46579970 2794875 complement(1636751..1639471) 1 NC_002937.3 identified by similarity to SP:Q46509; match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; aldehyde oxidoreductase 1639471 mop 2794875 mop Desulfovibrio vulgaris str. Hildenborough aldehyde oxidoreductase YP_010778.1 1636751 R 882 CDS YP_010779.1 46579971 2795731 complement(1639590..1640609) 1 NC_002937.3 identified by match to protein family HMM PF00994; molybdopterin biosynthesis protein 1640609 2795731 DVU1560 Desulfovibrio vulgaris str. Hildenborough molybdopterin biosynthesis protein YP_010779.1 1639590 R 882 CDS YP_010780.1 46579972 2795732 1640840..1641211 1 NC_002937.3 identified by match to protein family HMM PF02573; molybdenum-binding protein 1641211 2795732 DVU1561 Desulfovibrio vulgaris str. Hildenborough molybdenum-binding protein YP_010780.1 1640840 D 882 CDS YP_010781.1 46579973 2795733 complement(1641270..1644164) 1 NC_002937.3 identified by match to protein family HMM PF00672; HAMP domain-containing protein 1644164 2795733 DVU1562 Desulfovibrio vulgaris str. Hildenborough HAMP domain-containing protein YP_010781.1 1641270 R 882 CDS YP_010782.1 46579974 2795734 1644419..1647538 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 1647538 2795734 DVU1563 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_010782.1 1644419 D 882 CDS YP_010783.1 46579975 2795735 1647670..1647948 1 NC_002937.3 hypothetical protein 1647948 2795735 DVU1564 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010783.1 1647670 D 882 CDS YP_003858611.1 304569764 9714860 complement(1648550..1648942) 1 NC_002937.3 hypothetical protein 1648942 9714860 DVU4023 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858611.1 1648550 R 882 CDS YP_010785.1 46579977 2793457 1648971..1649738 1 NC_002937.3 identified by match to protein family HMM PF01507; phosphoadenosine phosphosulfate reductase 1649738 2793457 DVU1566 Desulfovibrio vulgaris str. Hildenborough phosphoadenosine phosphosulfate reductase YP_010785.1 1648971 D 882 CDS YP_010786.1 46579978 2793458 complement(1649748..1649960) 1 NC_002937.3 hypothetical protein 1649960 2793458 DVU1567 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010786.1 1649748 R 882 CDS YP_010787.1 46579979 2793459 1650124..1650633 1 NC_002937.3 identified by similarity to SP:P23887; match to protein family HMM PF00210; ferritin 1650633 2793459 DVU1568 Desulfovibrio vulgaris str. Hildenborough ferritin YP_010787.1 1650124 D 882 CDS YP_010788.1 46579980 2793460 1650706..1652442 1 NC_002937.3 identified by similarity to GP:43498; match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin oxidoreductase subunit alpha 1652442 porA 2793460 porA Desulfovibrio vulgaris str. Hildenborough pyruvate ferredoxin oxidoreductase subunit alpha YP_010788.1 1650706 D 882 CDS YP_010789.1 46579981 2793461 1652439..1653293 1 NC_002937.3 identified by similarity to GP:1565184; pyruvate ferredoxin oxidoreductase subunit beta 1653293 porB 2793461 porB Desulfovibrio vulgaris str. Hildenborough pyruvate ferredoxin oxidoreductase subunit beta YP_010789.1 1652439 D 882 CDS YP_010790.2 304569702 2793462 complement(1653748..1655037) 1 NC_002937.3 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1655037 rho 2793462 rho Desulfovibrio vulgaris str. Hildenborough transcription termination factor Rho YP_010790.2 1653748 R 882 CDS YP_010791.1 46579983 2793463 complement(1655325..1655840) 1 NC_002937.3 identified by match to protein family HMM PF02559; CarD family transcriptional regulator 1655840 2793463 DVU1572 Desulfovibrio vulgaris str. Hildenborough CarD family transcriptional regulator YP_010791.1 1655325 R 882 CDS YP_010792.1 46579984 2793464 complement(1655955..1656560) 1 NC_002937.3 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1656560 pth 2793464 pth Desulfovibrio vulgaris str. Hildenborough peptidyl-tRNA hydrolase YP_010792.1 1655955 R 882 CDS YP_010793.1 46579985 2793465 complement(1656675..1657247) 1 NC_002937.3 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1657247 rplY 2793465 rplY Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L25 YP_010793.1 1656675 R 882 CDS YP_010794.1 46579986 2793466 complement(1657297..1658235) 1 NC_002937.3 identified by similarity to SP:P08330; match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase 1658235 prsA 2793466 prsA Desulfovibrio vulgaris str. Hildenborough ribose-phosphate pyrophosphokinase YP_010794.1 1657297 R 882 CDS YP_010795.1 46579987 2796188 complement(1658357..1659217) 1 NC_002937.3 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1659217 ispE 2796188 ispE Desulfovibrio vulgaris str. Hildenborough 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_010795.1 1658357 R 882 CDS YP_010796.1 46579988 2796189 complement(1659214..1659759) 1 NC_002937.3 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1659759 hslV 2796189 hslV Desulfovibrio vulgaris str. Hildenborough ATP-dependent protease peptidase subunit YP_010796.1 1659214 R 882 CDS YP_010797.1 46579989 2796190 complement(1659921..1661366) 1 NC_002937.3 identified by match to protein family HMM PF01435; hypothetical protein 1661366 2796190 DVU1578 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010797.1 1659921 R 882 CDS YP_010798.1 46579990 2796191 complement(1661372..1662829) 1 NC_002937.3 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1662829 cysS 2796191 cysS Desulfovibrio vulgaris str. Hildenborough cysteinyl-tRNA synthetase YP_010798.1 1661372 R 882 CDS YP_010799.1 46579991 2796192 complement(1662846..1663289) 1 NC_002937.3 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase 1663289 2796192 DVU1580 Desulfovibrio vulgaris str. Hildenborough ribose 5-phosphate isomerase YP_010799.1 1662846 R 882 CDS YP_010800.1 46579992 2796193 complement(1663303..1663653) 1 NC_002937.3 hypothetical protein 1663653 2796193 DVU1581 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010800.1 1663303 R 882 CDS YP_010801.1 46579993 2796194 complement(1663668..1664507) 1 NC_002937.3 hypothetical protein 1664507 2796194 DVU1582 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010801.1 1663668 R 882 CDS YP_010802.1 46579994 2796195 complement(1664504..1666192) 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 1666192 2796195 DVU1583 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010802.1 1664504 R 882 CDS YP_010803.1 46579995 2796196 complement(1666207..1667277) 1 NC_002937.3 identified by match to protein family HMM PF00140; match to protein family HMM PF04542; match to protein family HMM PF04545; sigma 70 family protein 1667277 2796196 DVU1584 Desulfovibrio vulgaris str. Hildenborough sigma 70 family protein YP_010803.1 1666207 R 882 CDS YP_010804.1 46579996 2796021 1667483..1669897 1 NC_002937.3 identified by similarity to SP:P37586; match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; vitamin B12-dependent methionine synthase 1669897 2796021 DVU1585 Desulfovibrio vulgaris str. Hildenborough vitamin B12-dependent methionine synthase YP_010804.1 1667483 D 882 CDS YP_010805.1 46579997 2796022 1669924..1670391 1 NC_002937.3 identified by similarity to SP:P36893; thioredoxin family protein 1670391 2796022 DVU1586 Desulfovibrio vulgaris str. Hildenborough thioredoxin family protein YP_010805.1 1669924 D 882 CDS YP_010806.1 46579998 2796023 1670391..1670855 1 NC_002937.3 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase 1670855 2796023 DVU1587 Desulfovibrio vulgaris str. Hildenborough acetyltransferase YP_010806.1 1670391 D 882 CDS YP_010807.1 46579999 2796024 1670936..1671466 1 NC_002937.3 identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 1671466 hpt 2796024 hpt Desulfovibrio vulgaris str. Hildenborough hypoxanthine phosphoribosyltransferase YP_010807.1 1670936 D 882 CDS YP_010808.1 46580000 2796025 1671497..1672285 1 NC_002937.3 hypothetical protein 1672285 2796025 DVU1589 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010808.1 1671497 D 882 CDS YP_010809.1 46580001 2796026 1672298..1673668 1 NC_002937.3 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1673668 radA 2796026 radA Desulfovibrio vulgaris str. Hildenborough DNA repair protein RadA YP_010809.1 1672298 D 882 CDS YP_010810.1 46580002 2796027 1673771..1673902 1 NC_002937.3 hypothetical protein 1673902 2796027 DVU1591 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010810.1 1673771 D 882 CDS YP_010811.1 46580003 2796028 1673985..1675727 1 NC_002937.3 arginine N-succinyltransferase subunit beta 1675727 2796028 DVU1592 Desulfovibrio vulgaris str. Hildenborough arginine N-succinyltransferase subunit beta YP_010811.1 1673985 D 882 CDS YP_010812.1 46580004 2796029 1675754..1676116 1 NC_002937.3 identified by similarity to GP:510670; match to protein family HMM PF00072; chemotaxis protein CheY 1676116 cheY-1 2796029 cheY-1 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheY YP_010812.1 1675754 D 882 CDS YP_010813.1 46580005 2796030 1676184..1678310 1 NC_002937.3 identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 1678310 cheA-1 2796030 cheA-1 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheA YP_010813.1 1676184 D 882 CDS YP_010814.2 304569703 2796031 1678334..1679209 1 NC_002937.3 identified by similarity to SP:P07801; match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein methyltransferase 1679209 cheR-1 2796031 cheR-1 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein methyltransferase YP_010814.2 1678334 D 882 CDS YP_010815.1 46580007 2795951 1679212..1680285 1 NC_002937.3 identified by similarity to SP:P04042; match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB 1680285 cheB-1 2795951 cheB-1 Desulfovibrio vulgaris str. Hildenborough protein-glutamate methylesterase CheB YP_010815.1 1679212 D 882 CDS YP_010816.1 46580008 2795952 1680309..1680965 1 NC_002937.3 identified by similarity to SP:Q05805; match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite reductase, assimilatory-type 1680965 2795952 DVU1597 Desulfovibrio vulgaris str. Hildenborough sulfite reductase, assimilatory-type YP_010816.1 1680309 D 882 CDS YP_010817.1 46580009 2795953 complement(1681361..1681705) 1 NC_002937.3 identified by similarity to SP:Q9FC38; match to protein family HMM PF02641; hypothetical protein 1681705 2795953 DVU1598 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010817.1 1681361 R 882 CDS YP_010818.1 46580010 2795954 complement(1681750..1682124) 1 NC_002937.3 identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494; crcB protein 1682124 crcB 2795954 crcB Desulfovibrio vulgaris str. Hildenborough crcB protein YP_010818.1 1681750 R 882 CDS YP_010819.1 46580011 2795955 1682163..1682774 1 NC_002937.3 identified by match to protein family HMM PF01928; adenylate cyclase 1682774 2795955 DVU1600 Desulfovibrio vulgaris str. Hildenborough adenylate cyclase YP_010819.1 1682163 D 882 CDS YP_010820.1 46580012 2795956 1682865..1683179 1 NC_002937.3 identified by similarity to SP:Q9JV14; match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 1683179 2795956 DVU1601 Desulfovibrio vulgaris str. Hildenborough ATP-dependent Clp protease adaptor protein ClpS YP_010820.1 1682865 D 882 CDS YP_010821.1 46580013 2795957 1683179..1685509 1 NC_002937.3 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpA 1685509 clpA 2795957 clpA Desulfovibrio vulgaris str. Hildenborough ATP-dependent Clp protease, ATP-binding subunit ClpA YP_010821.1 1683179 D 882 CDS YP_010822.1 46580014 2795958 1685506..1686210 1 NC_002937.3 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1686210 aat 2795958 aat Desulfovibrio vulgaris str. Hildenborough leucyl/phenylalanyl-tRNA--protein transferase YP_010822.1 1685506 D 882 CDS YP_010823.1 46580015 2795959 complement(1686217..1686795) 1 NC_002937.3 hypothetical protein 1686795 2795959 DVU1604 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010823.1 1686217 R 882 CDS YP_010824.1 46580016 2795960 1686795..1688828 1 NC_002937.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1688828 uvrB 2795960 uvrB Desulfovibrio vulgaris str. Hildenborough excinuclease ABC subunit B YP_010824.1 1686795 D 882 CDS YP_010825.1 46580017 2796059 1688825..1689877 1 NC_002937.3 identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA family potassium uptake protein 1689877 2796059 DVU1606 Desulfovibrio vulgaris str. Hildenborough TrkA family potassium uptake protein YP_010825.1 1688825 D 882 CDS YP_010826.1 46580018 2796060 1689878..1690624 1 NC_002937.3 hypothetical protein 1690624 2796060 DVU1607 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010826.1 1689878 D 882 CDS YP_010827.1 46580019 2796061 1690678..1693077 1 NC_002937.3 identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 1693077 ligA 2796061 ligA Desulfovibrio vulgaris str. Hildenborough NAD-dependent DNA ligase YP_010827.1 1690678 D 882 CDS YP_010828.1 46580020 2796062 1693239..1694018 1 NC_002937.3 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1694018 dapB 2796062 dapB Desulfovibrio vulgaris str. Hildenborough dihydrodipicolinate reductase YP_010828.1 1693239 D 882 CDS YP_010829.1 46580021 2796063 1694019..1695698 1 NC_002937.3 identified by similarity to SP:Q03638; match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; glutamine-dependent NAD+ synthetase 1695698 nadE 2796063 nadE Desulfovibrio vulgaris str. Hildenborough glutamine-dependent NAD+ synthetase YP_010829.1 1694019 D 882 CDS YP_010830.1 46580022 2796064 complement(1695875..1697803) 1 NC_002937.3 identified by match to protein family HMM PF00384; match to protein family HMM PF04879; molybdopterin oxidoreductase domain-containing protein 1697803 2796064 DVU1611 Desulfovibrio vulgaris str. Hildenborough molybdopterin oxidoreductase domain-containing protein YP_010830.1 1695875 R 882 CDS YP_010831.1 46580023 2796065 complement(1698084..1698515) 1 NC_002937.3 identified by match to protein family HMM PF01842; ACT domain-containing protein 1698515 2796065 DVU1612 Desulfovibrio vulgaris str. Hildenborough ACT domain-containing protein YP_010831.1 1698084 R 882 CDS YP_010832.2 304569704 2796066 1698737..1699795 1 NC_002937.3 unknown function; probable involvement in glutamate synthesis; glutamate synthase 1699795 2796066 DVU1613 Desulfovibrio vulgaris str. Hildenborough glutamate synthase YP_010832.2 1698737 D 882 CDS YP_010833.1 46580025 2796067 1699809..1700339 1 NC_002937.3 identified by similarity to SP:P30132; match to protein family HMM PF00037; iron-sulfur cluster-binding protein 1700339 2796067 DVU1614 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_010833.1 1699809 D 882 CDS YP_010834.1 46580026 2796068 complement(1700751..1702058) 1 NC_002937.3 identified by similarity to SP:P76085; phenylacetate-coenzyme A ligase 1702058 paaK-2 2796068 paaK-2 Desulfovibrio vulgaris str. Hildenborough phenylacetate-coenzyme A ligase YP_010834.1 1700751 R 882 CDS YP_010835.1 46580027 2796069 complement(1702055..1702159) 1 NC_002937.3 hypothetical protein 1702159 2796069 DVU1616 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010835.1 1702055 R 882 CDS YP_010836.1 46580028 2795878 1702244..1702837 1 NC_002937.3 identified by match to protein family HMM PF00881; nitroreductase 1702837 2795878 DVU1617 Desulfovibrio vulgaris str. Hildenborough nitroreductase YP_010836.1 1702244 D 882 CDS YP_010837.1 46580029 2795879 1702850..1703254 1 NC_002937.3 identified by similarity to GP:15158001; match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein 1703254 2795879 DVU1618 Desulfovibrio vulgaris str. Hildenborough iojap family protein YP_010837.1 1702850 D 882 CDS YP_010838.1 46580030 2795880 1703251..1704786 1 NC_002937.3 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1704786 gpmA 2795880 gpmA Desulfovibrio vulgaris str. Hildenborough phosphoglyceromutase YP_010838.1 1703251 D 882 CDS YP_010839.1 46580031 2795881 1704791..1705033 1 NC_002937.3 hypothetical protein 1705033 2795881 DVU1620 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010839.1 1704791 D 882 CDS YP_010840.1 46580032 2795882 complement(1705135..1705557) 1 NC_002937.3 hypothetical protein 1705557 2795882 DVU1621 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010840.1 1705135 R 882 CDS YP_010841.1 46580033 2795883 complement(1706229..1707038) 1 NC_002937.3 phosphoribosylformylglycinamidine synthase I 1707038 purQ 2795883 purQ Desulfovibrio vulgaris str. Hildenborough phosphoribosylformylglycinamidine synthase I YP_010841.1 1706229 R 882 CDS YP_010842.1 46580034 2795884 1707295..1708938 1 NC_002937.3 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1708938 pyrG 2795884 pyrG Desulfovibrio vulgaris str. Hildenborough CTP synthetase YP_010842.1 1707295 D 882 CDS YP_010843.1 46580035 2795885 1709008..1709829 1 NC_002937.3 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1709829 kdsA 2795885 kdsA Desulfovibrio vulgaris str. Hildenborough 2-dehydro-3-deoxyphosphooctonate aldolase YP_010843.1 1709008 D 882 CDS YP_010844.1 46580036 2795886 1709819..1710346 1 NC_002937.3 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; YrbI family phosphatase 1710346 2795886 DVU1625 Desulfovibrio vulgaris str. Hildenborough YrbI family phosphatase YP_010844.1 1709819 D 882 CDS YP_010845.1 46580037 2795887 1710343..1710987 1 NC_002937.3 hypothetical protein 1710987 2795887 DVU1626 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010845.1 1710343 D 882 CDS YP_003858612.1 304569749 9714852 1711060..1711587 1 NC_002937.3 hypothetical protein 1711587 9714852 DVU4008 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858612.1 1711060 D 882 CDS YP_010846.1 46580038 2795888 1711584..1712309 1 NC_002937.3 identified by similarity to OMNI:DR2134; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1712309 2795888 DVU1627 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_010846.1 1711584 D 882 CDS YP_010847.1 46580039 2796092 1712453..1713883 1 NC_002937.3 identified by similarity to SP:P24255; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; RNA polymerase sigma-54 factor 1713883 rpoN 2796092 rpoN Desulfovibrio vulgaris str. Hildenborough RNA polymerase sigma-54 factor YP_010847.1 1712453 D 882 CDS YP_010848.1 46580040 2796093 1713942..1714481 1 NC_002937.3 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 1714481 yfiA 2796093 yfiA Desulfovibrio vulgaris str. Hildenborough ribosomal subunit interface protein YP_010848.1 1713942 D 882 CDS YP_010849.1 46580041 2796094 1714491..1714940 1 NC_002937.3 identified by match to protein family HMM PF00359; PTS system transporter subunit IIA 1714940 2796094 DVU1630 Desulfovibrio vulgaris str. Hildenborough PTS system transporter subunit IIA YP_010849.1 1714491 D 882 CDS YP_010850.1 46580042 2796095 1714949..1715860 1 NC_002937.3 identified by similarity to SP:O06973; match to protein family HMM PF03668; hypothetical protein 1715860 2796095 DVU1631 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010850.1 1714949 D 882 CDS YP_010851.1 46580043 2796096 1715889..1716326 1 NC_002937.3 identified by similarity to OMNI:BR2094; match to protein family HMM PF03610; PTS system transporter subunit IIA 1716326 2796096 DVU1632 Desulfovibrio vulgaris str. Hildenborough PTS system transporter subunit IIA YP_010851.1 1715889 D 882 CDS YP_010852.1 46580044 2796097 1716328..1716789 1 NC_002937.3 identified by similarity to SP:P42909; match to protein family HMM PF03830; PTS system transporter subunit IIB 1716789 2796097 DVU1633 Desulfovibrio vulgaris str. Hildenborough PTS system transporter subunit IIB YP_010852.1 1716328 D 882 CDS YP_010853.1 46580045 2796098 1716815..1717486 1 NC_002937.3 hypothetical protein 1717486 2796098 DVU1634 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010853.1 1716815 D 882 CDS YP_010854.1 46580046 2796099 1717473..1717577 1 NC_002937.3 hypothetical protein 1717577 2796099 DVU1635 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010854.1 1717473 D 882 CDS YP_010855.1 46580047 2796100 1717621..1718541 1 NC_002937.3 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 1718541 ppaC 2796100 ppaC Desulfovibrio vulgaris str. Hildenborough manganese-dependent inorganic pyrophosphatase YP_010855.1 1717621 D 882 CDS YP_010856.1 46580048 2796101 complement(1718745..1719182) 1 NC_002937.3 hypothetical protein 1719182 2796101 DVU1637 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010856.1 1718745 R 882 CDS YP_010857.1 46580049 2796102 complement(1719212..1719808) 1 NC_002937.3 hypothetical protein 1719808 2796102 DVU1638 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010857.1 1719212 R 882 CDS YP_010858.1 46580050 2796135 1719951..1720946 1 NC_002937.3 hypothetical protein 1720946 2796135 DVU1639 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010858.1 1719951 D 882 CDS YP_003858613.1 304569741 9714851 complement(1721042..1721284) 1 NC_002937.3 hypothetical protein 1721284 9714851 DVU4000 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858613.1 1721042 R 882 CDS YP_010860.1 46580052 2796137 1721579..1721902 1 NC_002937.3 identified by similarity to SP:P51732; hypothetical protein 1721902 2796137 DVU1641 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010860.1 1721579 D 882 CDS YP_010861.1 46580053 2796138 1721906..1722895 1 NC_002937.3 hypothetical protein 1722895 2796138 DVU1642 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010861.1 1721906 D 882 CDS YP_010862.1 46580054 2796141 complement(1723708..1724823) 1 NC_002937.3 identified by match to protein family HMM PF03773; permease 1724823 2796141 DVU1644 Desulfovibrio vulgaris str. Hildenborough permease YP_010862.1 1723708 R 882 CDS YP_010863.1 46580055 2796142 complement(1724829..1725173) 1 NC_002937.3 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 1725173 2796142 DVU1645 Desulfovibrio vulgaris str. Hildenborough ArsR family transcriptional regulator YP_010863.1 1724829 R 882 CDS YP_010864.1 46580056 2796143 1725332..1725775 1 NC_002937.3 identified by similarity to SP:P45947; match to protein family HMM PF01451; arsenate reductase 1725775 arsC 2796143 arsC Desulfovibrio vulgaris str. Hildenborough arsenate reductase YP_010864.1 1725332 D 882 CDS YP_010865.1 46580057 2795918 complement(1726001..1727239) 1 NC_002937.3 identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 1727239 lysA-1 2795918 lysA-1 Desulfovibrio vulgaris str. Hildenborough diaminopimelate decarboxylase YP_010865.1 1726001 R 882 CDS YP_010866.1 46580058 2795919 complement(1727313..1727753) 1 NC_002937.3 lipoprotein 1727753 2795919 DVU1648 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010866.1 1727313 R 882 CDS YP_010867.1 46580059 2795920 complement(1727737..1730454) 1 NC_002937.3 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1730454 mutS 2795920 mutS Desulfovibrio vulgaris str. Hildenborough DNA mismatch repair protein MutS YP_010867.1 1727737 R 882 CDS YP_010868.1 46580060 2795921 complement(1730618..1731742) 1 NC_002937.3 identified by similarity to SP:P45576; hypothetical protein 1731742 2795921 DVU1650 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010868.1 1730618 R 882 CDS YP_010869.1 46580061 2795922 complement(1731757..1732128) 1 NC_002937.3 identified by similarity to OMNI:NTL01SM00387; hypothetical protein 1732128 2795922 DVU1651 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010869.1 1731757 R 882 CDS YP_010870.1 46580062 2795923 complement(1732139..1732663) 1 NC_002937.3 identified by match to protein family HMM PF01230; HIT family protein 1732663 2795923 DVU1652 Desulfovibrio vulgaris str. Hildenborough HIT family protein YP_010870.1 1732139 R 882 CDS YP_010871.1 46580063 2795924 complement(1732726..1735440) 1 NC_002937.3 identified by similarity to SP:P42977; match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; polyA polymerase 1735440 2795924 DVU1653 Desulfovibrio vulgaris str. Hildenborough polyA polymerase YP_010871.1 1732726 R 882 CDS YP_010872.1 46580064 2795925 complement(1735437..1736321) 1 NC_002937.3 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase site specific recombinase 1736321 2795925 DVU1654 Desulfovibrio vulgaris str. Hildenborough phage integrase site specific recombinase YP_010872.1 1735437 R 882 CDS YP_010873.1 46580065 2795926 1736595..1737761 1 NC_002937.3 catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis; LL-diaminopimelate aminotransferase 1737761 2795926 DVU1655 Desulfovibrio vulgaris str. Hildenborough LL-diaminopimelate aminotransferase YP_010873.1 1736595 D 882 CDS YP_010874.1 46580066 2795927 1737836..1738261 1 NC_002937.3 identified by similarity to SP:P26281; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1738261 folK 2795927 folK Desulfovibrio vulgaris str. Hildenborough 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_010874.1 1737836 D 882 CDS YP_010875.1 46580067 2795895 1738286..1738585 1 NC_002937.3 hypothetical protein 1738585 2795895 DVU1657 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010875.1 1738286 D 882 CDS YP_010876.1 46580068 2795896 1738843..1739490 1 NC_002937.3 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 1739490 2795896 DVU1658 Desulfovibrio vulgaris str. Hildenborough translaldolase YP_010876.1 1738843 D 882 CDS YP_010877.1 46580069 2795897 1740015..1740152 1 NC_002937.3 hypothetical protein 1740152 2795897 DVU1659 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010877.1 1740015 D 882 CDS YP_010878.1 46580070 2795899 complement(1740327..1741124) 1 NC_002937.3 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 1741124 2795899 DVU1660 Desulfovibrio vulgaris str. Hildenborough UDP pyrophosphate phosphatase YP_010878.1 1740327 R 882 CDS YP_010879.1 46580071 2795900 1741334..1741528 1 NC_002937.3 hypothetical protein 1741528 2795900 DVU1661 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010879.1 1741334 D 882 CDS YP_010880.1 46580072 2795901 1741571..1742713 1 NC_002937.3 identified by match to protein family HMM PF03739; permease 1742713 2795901 DVU1662 Desulfovibrio vulgaris str. Hildenborough permease YP_010880.1 1741571 D 882 CDS YP_010881.1 46580073 2795902 1742710..1743792 1 NC_002937.3 identified by match to protein family HMM PF03739; permease 1743792 2795902 DVU1663 Desulfovibrio vulgaris str. Hildenborough permease YP_010881.1 1742710 D 882 CDS YP_010882.1 46580074 2795903 complement(1743911..1744561) 1 NC_002937.3 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1744561 engB 2795903 engB Desulfovibrio vulgaris str. Hildenborough ribosome biogenesis GTP-binding protein YsxC YP_010882.1 1743911 R 882 CDS YP_010883.1 46580075 2795904 1744706..1745173 1 NC_002937.3 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1745173 aroQ 2795904 aroQ Desulfovibrio vulgaris str. Hildenborough 3-dehydroquinate dehydratase YP_010883.1 1744706 D 882 CDS YP_010884.1 46580076 2795905 1745214..1745771 1 NC_002937.3 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1745771 efp 2795905 efp Desulfovibrio vulgaris str. Hildenborough elongation factor P YP_010884.1 1745214 D 882 CDS YP_010885.1 46580077 2794389 1745901..1748231 1 NC_002937.3 identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 1748231 2794389 DVU1667 Desulfovibrio vulgaris str. Hildenborough FtsK/SpoIIIE family protein YP_010885.1 1745901 D 882 CDS YP_010886.1 46580078 2794390 1748249..1748926 1 NC_002937.3 identified by similarity to SP:P39178; match to protein family HMM PF03548; outer membrane lipoprotein carrier protein 1748926 2794390 DVU1668 Desulfovibrio vulgaris str. Hildenborough outer membrane lipoprotein carrier protein YP_010886.1 1748249 D 882 CDS YP_010887.2 304569705 2794391 complement(1749106..1749984) 1 NC_002937.3 identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1749984 rluB 2794391 rluB Desulfovibrio vulgaris str. Hildenborough ribosomal large subunit pseudouridine synthase B YP_010887.2 1749106 R 882 CDS YP_010888.1 46580080 2794392 complement(1749981..1750619) 1 NC_002937.3 identified by similarity to OMNI:NTL03CP2236; hypothetical protein 1750619 2794392 DVU1670 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010888.1 1749981 R 882 CDS YP_010889.1 46580081 2794393 1750731..1752536 1 NC_002937.3 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1752536 2794393 DVU1671 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein/permease YP_010889.1 1750731 D 882 CDS YP_010890.1 46580082 2794394 1752533..1753159 1 NC_002937.3 identified by similarity to OMNI:NTL01FN1845; match to protein family HMM PF04028; hypothetical protein 1753159 2794394 DVU1672 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010890.1 1752533 D 882 CDS YP_010891.2 304569706 2794395 1753156..1754100 1 NC_002937.3 acyltransferase 1754100 2794395 DVU1673 Desulfovibrio vulgaris str. Hildenborough acyltransferase YP_010891.2 1753156 D 882 CDS YP_010892.1 46580084 2794396 1754716..1755330 1 NC_002937.3 identified by similarity to SP:Q37906; match to protein family HMM PF00717; transcriptional regulator 1755330 2794396 DVU1674 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_010892.1 1754716 D 882 CDS YP_010893.1 46580085 2794397 1755389..1755553 1 NC_002937.3 hypothetical protein 1755553 2794397 DVU1675 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010893.1 1755389 D 882 CDS YP_010894.1 46580086 2794904 complement(1755893..1756243) 1 NC_002937.3 identified by similarity to SP:P33582; match to protein family HMM PF03840; preprotein translocase subunit SecG 1756243 secG 2794904 secG Desulfovibrio vulgaris str. Hildenborough preprotein translocase subunit SecG YP_010894.1 1755893 R 882 CDS YP_010895.1 46580087 2794905 complement(1756281..1757036) 1 NC_002937.3 identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 1757036 tpiA 2794905 tpiA Desulfovibrio vulgaris str. Hildenborough triosephosphate isomerase YP_010895.1 1756281 R 882 CDS YP_010896.1 46580088 2794906 complement(1757056..1757550) 1 NC_002937.3 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 1757550 rimI 2794906 rimI Desulfovibrio vulgaris str. Hildenborough ribosomal-protein-alanine acetyltransferase YP_010896.1 1757056 R 882 CDS YP_010897.1 46580089 2794907 1757573..1758109 1 NC_002937.3 identified by match to protein family HMM PF00293; isopentenyl-diphosphate delta-isomerase 1758109 idi 2794907 idi Desulfovibrio vulgaris str. Hildenborough isopentenyl-diphosphate delta-isomerase YP_010897.1 1757573 D 882 CDS YP_010898.1 46580090 2794908 complement(1758067..1758858) 1 NC_002937.3 identified by similarity to SP:P22783; match to protein family HMM PF00459; inositol-1-monophosphatase 1758858 suhB 2794908 suhB Desulfovibrio vulgaris str. Hildenborough inositol-1-monophosphatase YP_010898.1 1758067 R 882 CDS YP_010899.1 46580091 2794909 complement(1758877..1759899) 1 NC_002937.3 identified by similarity to SP:P13519; match to protein family HMM TIGR00904; rod shape-determining protein MreB 1759899 mreB-2 2794909 mreB-2 Desulfovibrio vulgaris str. Hildenborough rod shape-determining protein MreB YP_010899.1 1758877 R 882 CDS YP_010900.1 46580092 2794910 complement(1759899..1760933) 1 NC_002937.3 identified by match to protein family HMM PF01590; GAF domain-containing protein 1760933 2794910 DVU1682 Desulfovibrio vulgaris str. Hildenborough GAF domain-containing protein YP_010900.1 1759899 R 882 CDS YP_010901.1 46580093 2794911 1761202..1762938 1 NC_002937.3 hypothetical protein 1762938 2794911 DVU1683 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010901.1 1761202 D 882 CDS YP_010902.2 304569707 2794912 1762935..1764065 1 NC_002937.3 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528; glycine cleavage system T protein 1764065 gcvT 2794912 gcvT Desulfovibrio vulgaris str. Hildenborough glycine cleavage system T protein YP_010902.2 1762935 D 882 CDS YP_010903.1 46580095 2794913 1764117..1764866 1 NC_002937.3 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1764866 2794913 DVU1685 Desulfovibrio vulgaris str. Hildenborough 16S ribosomal RNA methyltransferase RsmE YP_010903.1 1764117 D 882 CDS YP_010904.1 46580096 2794914 1764863..1766098 1 NC_002937.3 identified by match to protein family HMM PF00004; recombination factor protein RarA 1766098 2794914 DVU1686 Desulfovibrio vulgaris str. Hildenborough recombination factor protein RarA YP_010904.1 1764863 D 882 CDS YP_010905.1 46580097 2795821 1766095..1766802 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1766802 2795821 DVU1687 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_010905.1 1766095 D 882 CDS YP_010906.1 46580098 2795822 1766799..1767608 1 NC_002937.3 identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1767608 2795822 DVU1688 Desulfovibrio vulgaris str. Hildenborough 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_010906.1 1766799 D 882 CDS YP_010907.1 46580099 2795823 1767793..1767978 1 NC_002937.3 hypothetical protein 1767978 2795823 DVU1689 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010907.1 1767793 D 882 CDS YP_010908.1 46580100 2795824 1768176..1768745 1 NC_002937.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1768745 2795824 DVU1690 Desulfovibrio vulgaris str. Hildenborough TetR family transcriptional regulator YP_010908.1 1768176 D 882 CDS YP_010909.1 46580101 2795825 1768959..1769066 1 NC_002937.3 hypothetical protein 1769066 2795825 DVU1691 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010909.1 1768959 D 882 CDS YP_010910.1 46580102 2795826 complement(1769045..1769440) 1 NC_002937.3 hypothetical protein 1769440 2795826 DVU1692 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010910.1 1769045 R 882 CDS YP_010911.1 46580103 2795827 complement(1769611..1770585) 1 NC_002937.3 identified by similarity to SP:P22250; match to protein family HMM PF00749; glutamyl-tRNA synthetase 1770585 gltX-1 2795827 gltX-1 Desulfovibrio vulgaris str. Hildenborough glutamyl-tRNA synthetase YP_010911.1 1769611 R 882 CDS YP_010912.1 46580104 2795829 complement(1770879..1771088) 1 NC_002937.3 identified by match to protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 1771088 2795829 DVU1694 Desulfovibrio vulgaris str. Hildenborough C4-type zinc finger DksA/TraR family protein YP_010912.1 1770879 R 882 CDS YP_010913.1 46580105 2795777 complement(1771104..1771613) 1 NC_002937.3 tail fiber assembly protein 1771613 2795777 DVU1695 Desulfovibrio vulgaris str. Hildenborough tail fiber assembly protein YP_010913.1 1771104 R 882 CDS YP_010914.1 46580106 2795778 complement(1771606..1771974) 1 NC_002937.3 hypothetical protein 1771974 2795778 DVU1696 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010914.1 1771606 R 882 CDS YP_010915.1 46580107 2795779 complement(1771977..1772555) 1 NC_002937.3 hypothetical protein 1772555 2795779 DVU1697 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010915.1 1771977 R 882 CDS YP_010916.1 46580108 2795780 complement(1773086..1773571) 1 NC_002937.3 hypothetical protein 1773571 2795780 DVU1698 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010916.1 1773086 R 882 CDS YP_010917.1 46580109 2795781 1773938..1774057 1 NC_002937.3 hypothetical protein 1774057 2795781 DVU1699 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010917.1 1773938 D 882 CDS YP_010918.1 46580110 2795782 1774325..1775572 1 NC_002937.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase 1775572 2795782 DVU1700 Desulfovibrio vulgaris str. Hildenborough metallo-beta-lactamase YP_010918.1 1774325 D 882 CDS YP_010919.1 46580111 2795783 complement(1775767..1776084) 1 NC_002937.3 hypothetical protein 1776084 2795783 DVU1701 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010919.1 1775767 R 882 CDS YP_003858614.1 304569765 9714850 1776136..1776639 1 NC_002937.3 hypothetical protein 1776639 9714850 DVU4024 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858614.1 1776136 D 882 CDS YP_010920.1 46580112 2795784 complement(1776998..1777741) 1 NC_002937.3 identified by similarity to GP:21114108; match to protein family HMM PF01863; hypothetical protein 1777741 2795784 DVU1702 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010920.1 1776998 R 882 CDS YP_010921.1 46580113 2795785 complement(1777728..1781027) 1 NC_002937.3 identified by match to protein family HMM PF04313; match to protein family HMM TIGR00348; type I restriction-modification enzyme, R subunit 1781027 2795785 DVU1703 Desulfovibrio vulgaris str. Hildenborough type I restriction-modification enzyme, R subunit YP_010921.1 1777728 R 882 CDS YP_010922.1 46580114 2795786 complement(1781206..1781433) 1 NC_002937.3 identified by similarity to OMNI:SAG0550; hypothetical protein 1781433 2795786 DVU1704 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010922.1 1781206 R 882 CDS YP_010923.2 304569708 2795787 complement(1781460..1782710) 1 NC_002937.3 identified by match to protein family HMM PF01420; type I restriction-modification enzyme, S subunit 1782710 2795787 DVU1705 Desulfovibrio vulgaris str. Hildenborough type I restriction-modification enzyme, S subunit YP_010923.2 1781460 R 882 CDS YP_010925.1 46580117 2795831 complement(1782760..1782969) 1 NC_002937.3 hypothetical protein 1782969 2795831 DVU1707 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010925.1 1782760 R 882 CDS YP_010926.1 46580118 2795832 complement(1782972..1783985) 1 NC_002937.3 identified by similarity to OMNI:NTL01XC0464; hypothetical protein 1783985 2795832 DVU1708 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010926.1 1782972 R 882 CDS YP_010927.1 46580119 2795833 complement(1783988..1785508) 1 NC_002937.3 identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 1785508 hsdM 2795833 hsdM Desulfovibrio vulgaris str. Hildenborough type I restriction-modification system, M subunit YP_010927.1 1783988 R 882 CDS YP_010928.1 46580120 2795834 complement(1785521..1786099) 1 NC_002937.3 identified by similarity to GP:21114103; hypothetical protein 1786099 2795834 DVU1710 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010928.1 1785521 R 882 CDS YP_010929.1 46580121 2795835 complement(1786512..1786649) 1 NC_002937.3 hypothetical protein 1786649 2795835 DVU1711 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010929.1 1786512 R 882 CDS YP_010930.1 46580122 2795836 complement(1786746..1788347) 1 NC_002937.3 hypothetical protein 1788347 2795836 DVU1712 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010930.1 1786746 R 882 CDS YP_010931.1 46580123 2795837 complement(1788317..1788952) 1 NC_002937.3 hypothetical protein 1788952 2795837 DVU1713 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010931.1 1788317 R 882 CDS YP_010932.1 46580124 2795838 complement(1788961..1791054) 1 NC_002937.3 identified by similarity to GP:13186158; hypothetical protein 1791054 2795838 DVU1714 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010932.1 1788961 R 882 CDS YP_010933.1 46580125 2795839 complement(1791227..1791814) 1 NC_002937.3 hypothetical protein 1791814 2795839 DVU1715 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010933.1 1791227 R 882 CDS YP_010934.1 46580126 2795840 complement(1791856..1792200) 1 NC_002937.3 hypothetical protein 1792200 2795840 DVU1716 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010934.1 1791856 R 882 CDS YP_010935.1 46580127 2795841 complement(1792212..1792613) 1 NC_002937.3 hypothetical protein 1792613 2795841 DVU1717 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010935.1 1792212 R 882 CDS YP_010936.1 46580128 2795766 complement(1792670..1793602) 1 NC_002937.3 hypothetical protein 1793602 2795766 DVU1718 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010936.1 1792670 R 882 CDS YP_010937.1 46580129 2795767 complement(1793607..1794446) 1 NC_002937.3 hypothetical protein 1794446 2795767 DVU1719 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010937.1 1793607 R 882 CDS YP_010938.1 46580130 2795768 complement(1794443..1794775) 1 NC_002937.3 hypothetical protein 1794775 2795768 DVU1720 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010938.1 1794443 R 882 CDS YP_010939.1 46580131 2795769 complement(1794775..1796427) 1 NC_002937.3 hypothetical protein 1796427 2795769 DVU1721 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010939.1 1794775 R 882 CDS YP_010940.1 46580132 2795770 complement(1796428..1796781) 1 NC_002937.3 hypothetical protein 1796781 2795770 DVU1722 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010940.1 1796428 R 882 CDS YP_010941.1 46580133 2795771 complement(1796778..1797332) 1 NC_002937.3 hypothetical protein 1797332 2795771 DVU1723 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010941.1 1796778 R 882 CDS YP_010942.1 46580134 2795772 complement(1797329..1798933) 1 NC_002937.3 phage protein 1798933 2795772 DVU1724 Desulfovibrio vulgaris str. Hildenborough phage protein YP_010942.1 1797329 R 882 CDS YP_010943.1 46580135 2795773 complement(1798920..1799528) 1 NC_002937.3 identified by similarity to GP:13346844; hypothetical protein 1799528 2795773 DVU1725 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010943.1 1798920 R 882 CDS YP_010944.1 46580136 2795774 complement(1799664..1799912) 1 NC_002937.3 hypothetical protein 1799912 2795774 DVU1726 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010944.1 1799664 R 882 CDS YP_010945.1 46580137 2795775 complement(1799909..1800259) 1 NC_002937.3 hypothetical protein 1800259 2795775 DVU1727 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010945.1 1799909 R 882 CDS YP_010946.1 46580138 2795776 complement(1800259..1800675) 1 NC_002937.3 identified by similarity to GP:16506030; hypothetical protein 1800675 2795776 DVU1728 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010946.1 1800259 R 882 CDS YP_010947.1 46580139 2795799 1800946..1801224 1 NC_002937.3 identified by similarity to GP:21203107; match to protein family HMM PF05015; killer protein 1801224 2795799 DVU1729 Desulfovibrio vulgaris str. Hildenborough killer protein YP_010947.1 1800946 D 882 CDS YP_010948.1 46580140 2795800 1801234..1801539 1 NC_002937.3 identified by match to protein family HMM PF01381; DNA-binding protein 1801539 2795800 DVU1730 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_010948.1 1801234 D 882 CDS YP_010949.1 46580141 2795801 complement(1801647..1801817) 1 NC_002937.3 hypothetical protein 1801817 2795801 DVU1731 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010949.1 1801647 R 882 CDS YP_010950.1 46580142 2795802 complement(1801863..1802090) 1 NC_002937.3 hypothetical protein 1802090 2795802 DVU1732 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010950.1 1801863 R 882 CDS YP_010951.1 46580143 2795803 complement(1803107..1803328) 1 NC_002937.3 hypothetical protein 1803328 2795803 DVU1733 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010951.1 1803107 R 882 CDS YP_010952.1 46580144 2795804 complement(1804805..1804981) 1 NC_002937.3 hypothetical protein 1804981 2795804 DVU1734 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010952.1 1804805 R 882 CDS YP_010953.1 46580145 2795805 1805962..1806105 1 NC_002937.3 hypothetical protein 1806105 2795805 DVU1735 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010953.1 1805962 D 882 CDS YP_010954.1 46580146 2795806 1806089..1806283 1 NC_002937.3 hypothetical protein 1806283 2795806 DVU1736 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010954.1 1806089 D 882 CDS YP_010955.1 46580147 2795807 complement(1806390..1806608) 1 NC_002937.3 identified by similarity to GP:12580916; hypothetical protein 1806608 2795807 DVU1737 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010955.1 1806390 R 882 CDS YP_010956.1 46580148 2795808 complement(1806786..1807430) 1 NC_002937.3 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 1807430 2795808 DVU1738 Desulfovibrio vulgaris str. Hildenborough phage integrase site specific recombinase YP_010956.1 1806786 R 882 CDS YP_010957.1 46580149 2795842 complement(1808056..1808148) 1 NC_002937.3 hypothetical protein 1808148 2795842 DVU1739 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010957.1 1808056 R 882 CDS YP_010958.1 46580150 2795843 complement(1808578..1808979) 1 NC_002937.3 hypothetical protein 1808979 2795843 DVU1740 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010958.1 1808578 R 882 CDS YP_010959.1 46580151 2795844 complement(1808976..1809947) 1 NC_002937.3 hypothetical protein 1809947 2795844 DVU1741 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010959.1 1808976 R 882 CDS YP_010960.1 46580152 2795845 1810417..1810656 1 NC_002937.3 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; prevent-host-death family protein 1810656 2795845 DVU1742 Desulfovibrio vulgaris str. Hildenborough prevent-host-death family protein YP_010960.1 1810417 D 882 CDS YP_010961.1 46580153 2795846 complement(1810662..1811099) 1 NC_002937.3 hypothetical protein 1811099 2795846 DVU1743 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010961.1 1810662 R 882 CDS YP_010962.1 46580154 2795847 complement(1811183..1811425) 1 NC_002937.3 identified by match to protein family HMM PF01381; DNA-binding protein 1811425 2795847 DVU1744 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_010962.1 1811183 R 882 CDS YP_010963.1 46580155 2795848 1811492..1812031 1 NC_002937.3 identified by match to protein family HMM PF01381; DNA-binding protein 1812031 2795848 DVU1745 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_010963.1 1811492 D 882 CDS YP_010964.1 46580156 2795849 1812266..1813375 1 NC_002937.3 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; C-5 cytosine-specific DNA methylase 1813375 2795849 DVU1746 Desulfovibrio vulgaris str. Hildenborough C-5 cytosine-specific DNA methylase YP_010964.1 1812266 D 882 CDS YP_010965.1 46580157 2795850 1813416..1816361 1 NC_002937.3 identified by match to protein family HMM PF02518; match to protein family HMM TIGR01369; hypothetical protein 1816361 2795850 DVU1747 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010965.1 1813416 D 882 CDS YP_010966.1 46580158 2795851 1816342..1818114 1 NC_002937.3 hypothetical protein 1818114 2795851 DVU1748 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010966.1 1816342 D 882 CDS YP_010967.1 46580159 2795852 complement(1818096..1818317) 1 NC_002937.3 hypothetical protein 1818317 2795852 DVU1749 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010967.1 1818096 R 882 CDS YP_010968.1 46580160 2795853 1818336..1819118 1 NC_002937.3 hypothetical protein 1819118 2795853 DVU1750 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010968.1 1818336 D 882 CDS YP_010969.1 46580161 2795788 1819311..1819457 1 NC_002937.3 hypothetical protein 1819457 2795788 DVU1751 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010969.1 1819311 D 882 CDS YP_010970.1 46580162 2795789 1819838..1820077 1 NC_002937.3 hypothetical protein 1820077 2795789 DVU1752 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010970.1 1819838 D 882 CDS YP_010971.1 46580163 2795790 1820161..1820334 1 NC_002937.3 hypothetical protein 1820334 2795790 DVU1753 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010971.1 1820161 D 882 CDS YP_010972.1 46580164 2795791 1820331..1820738 1 NC_002937.3 hypothetical protein 1820738 2795791 DVU1754 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010972.1 1820331 D 882 CDS YP_010973.1 46580165 2795792 1820735..1820977 1 NC_002937.3 hypothetical protein 1820977 2795792 DVU1755 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010973.1 1820735 D 882 CDS YP_010974.1 46580166 2795793 1821372..1821635 1 NC_002937.3 hypothetical protein 1821635 2795793 DVU1756 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010974.1 1821372 D 882 CDS YP_010975.1 46580167 2795794 complement(1821607..1822728) 1 NC_002937.3 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 1822728 2795794 DVU1757 Desulfovibrio vulgaris str. Hildenborough phage integrase site specific recombinase YP_010975.1 1821607 R 882 CDS YP_010976.1 46580168 2795795 1823074..1823781 1 NC_002937.3 lipoprotein 1823781 2795795 DVU1758 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_010976.1 1823074 D 882 CDS YP_010977.1 46580169 2795796 complement(1823946..1824314) 1 NC_002937.3 identified by match to protein family HMM PF02573; molybdenum-binding protein 1824314 2795796 DVU1759 Desulfovibrio vulgaris str. Hildenborough molybdenum-binding protein YP_010977.1 1823946 R 882 CDS YP_010978.1 46580170 2795797 complement(1824953..1825537) 1 NC_002937.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1825537 2795797 DVU1760 Desulfovibrio vulgaris str. Hildenborough TetR family transcriptional regulator YP_010978.1 1824953 R 882 CDS YP_010979.1 46580171 2795798 1825555..1825746 1 NC_002937.3 hypothetical protein 1825746 2795798 DVU1761 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010979.1 1825555 D 882 CDS YP_010980.1 46580172 2795809 1825786..1826244 1 NC_002937.3 identified by similarity to OMNI:VCA1051; match to protein family HMM PF03733; hypothetical protein 1826244 2795809 DVU1762 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010980.1 1825786 D 882 CDS YP_010981.1 46580173 2795810 complement(1826856..1827011) 1 NC_002937.3 hypothetical protein 1827011 2795810 DVU1763 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010981.1 1826856 R 882 CDS YP_010982.1 46580174 2795811 1827038..1827307 1 NC_002937.3 identified by similarity to OMNI:NTL01TT1482; hypothetical protein 1827307 2795811 DVU1764 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010982.1 1827038 D 882 CDS YP_010983.1 46580175 2795812 1827335..1828729 1 NC_002937.3 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 1828729 thiH 2795812 thiH Desulfovibrio vulgaris str. Hildenborough thiamine biosynthesis protein ThiH YP_010983.1 1827335 D 882 CDS YP_010984.1 46580176 2795813 1828716..1830128 1 NC_002937.3 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 1830128 2795813 DVU1766 Desulfovibrio vulgaris str. Hildenborough aspartate ammonia-lyase YP_010984.1 1828716 D 882 CDS YP_010985.1 46580177 2795814 1830125..1831093 1 NC_002937.3 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1831093 2795814 DVU1767 Desulfovibrio vulgaris str. Hildenborough biotin synthase YP_010985.1 1830125 D 882 CDS YP_010986.1 46580178 2795815 1831098..1832330 1 NC_002937.3 identified by match to protein family HMM TIGR00231; GTP-binding protein 1832330 2795815 DVU1768 Desulfovibrio vulgaris str. Hildenborough GTP-binding protein YP_010986.1 1831098 D 882 CDS YP_010987.1 46580179 2795816 1832483..1833748 1 NC_002937.3 identified by similarity to SP:P07598; match to protein family HMM PF00037; match to protein family HMM PF02906; periplasmic [Fe] hydrogenase large subunit 1833748 hydA 2795816 hydA Desulfovibrio vulgaris str. Hildenborough periplasmic [Fe] hydrogenase large subunit YP_010987.1 1832483 D 882 CDS YP_010988.1 46580180 2795817 1833760..1834131 1 NC_002937.3 identified by similarity to SP:P07603; match to protein family HMM PF02256; match to protein family HMM TIGR01409; periplasmic [Fe] hydrogenase small subunit 1834131 hydB 2795817 hydB Desulfovibrio vulgaris str. Hildenborough periplasmic [Fe] hydrogenase small subunit YP_010988.1 1833760 D 882 CDS YP_010989.1 46580181 2795818 complement(1834384..1836204) 1 NC_002937.3 identified by similarity to GP:40828; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; [Fe] hydrogenase gamma 1836204 hydC 2795818 hydC Desulfovibrio vulgaris str. Hildenborough [Fe] hydrogenase gamma YP_010989.1 1834384 R 882 CDS YP_010990.1 46580182 2795819 complement(1836228..1838249) 1 NC_002937.3 identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 1838249 2795819 DVU1772 Desulfovibrio vulgaris str. Hildenborough pyridine nucleotide-disulfide oxidoreductase YP_010990.1 1836228 R 882 CDS YP_010991.1 46580183 2795820 1838243..1838536 1 NC_002937.3 hypothetical protein 1838536 2795820 DVU1773 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010991.1 1838243 D 882 CDS YP_010992.1 46580184 2794281 1838748..1839629 1 NC_002937.3 hypothetical protein 1839629 2794281 DVU1774 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010992.1 1838748 D 882 CDS YP_010993.1 46580185 2794282 complement(1839892..1840536) 1 NC_002937.3 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1840536 ribB 2794282 ribB Desulfovibrio vulgaris str. Hildenborough 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_010993.1 1839892 R 882 CDS YP_010994.1 46580186 2794283 complement(1840788..1840901) 1 NC_002937.3 hypothetical protein 1840901 2794283 DVU1776 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010994.1 1840788 R 882 CDS YP_010995.1 46580187 2794284 complement(1841010..1841747) 1 NC_002937.3 identified by similarity to SP:P17582; match to protein family HMM PF00484; carbonic anhydrase 1841747 cynT 2794284 cynT Desulfovibrio vulgaris str. Hildenborough carbonic anhydrase YP_010995.1 1841010 R 882 CDS YP_010996.1 46580188 2794285 complement(1841677..1843122) 1 NC_002937.3 identified by similarity to OMNI:CT0538; match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1843122 2794285 DVU1778 Desulfovibrio vulgaris str. Hildenborough cation efflux family protein YP_010996.1 1841677 R 882 CDS YP_010997.1 46580189 2794286 complement(1843176..1843382) 1 NC_002937.3 hypothetical protein 1843382 2794286 DVU1779 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010997.1 1843176 R 882 CDS YP_010998.1 46580190 2794287 complement(1843438..1843743) 1 NC_002937.3 identified by similarity to OMNI:NTL01XC1623; hypothetical protein 1843743 2794287 DVU1780 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010998.1 1843438 R 882 CDS YP_010999.1 46580191 2794288 complement(1843928..1844593) 1 NC_002937.3 identified by similarity to OMNI:NTL01NM01533; match to protein family HMM PF02589; hypothetical protein 1844593 2794288 DVU1781 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_010999.1 1843928 R 882 CDS YP_011000.1 46580192 2794289 complement(1844586..1846013) 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273; iron-sulfur cluster-binding protein 1846013 2794289 DVU1782 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_011000.1 1844586 R 882 CDS YP_011001.1 46580193 2794290 complement(1846006..1846758) 1 NC_002937.3 identified by match to protein family HMM PF02754; hypothetical protein 1846758 2794290 DVU1783 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011001.1 1846006 R 882 CDS YP_011002.1 46580194 2794291 1846930..1847691 1 NC_002937.3 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 1847691 2794291 DVU1784 Desulfovibrio vulgaris str. Hildenborough short chain dehydrogenase/reductase oxidoreductase YP_011002.1 1846930 D 882 CDS YP_011003.1 46580195 2794292 1847895..1848497 1 NC_002937.3 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC membrane protein 1848497 2794292 DVU1785 Desulfovibrio vulgaris str. Hildenborough MarC membrane protein YP_011003.1 1847895 D 882 CDS YP_011004.1 46580196 2793312 complement(1849057..1850115) 1 NC_002937.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1850115 2793312 DVU1786 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_011004.1 1849057 R 882 CDS YP_011005.1 46580197 2793313 complement(1850148..1850774) 1 NC_002937.3 identified by match to protein family HMM PF00565; nuclease domain-containing protein 1850774 2793313 DVU1787 Desulfovibrio vulgaris str. Hildenborough nuclease domain-containing protein YP_011005.1 1850148 R 882 CDS YP_011006.1 46580198 2793314 complement(1851002..1852774) 1 NC_002937.3 identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma-70 factor 1852774 rpoD 2793314 rpoD Desulfovibrio vulgaris str. Hildenborough RNA polymerase sigma-70 factor YP_011006.1 1851002 R 882 CDS YP_011007.1 46580199 2793315 complement(1852767..1854485) 1 NC_002937.3 identified by similarity to SP:O33470; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase 1854485 dnaG 2793315 dnaG Desulfovibrio vulgaris str. Hildenborough DNA primase YP_011007.1 1852767 R 882 CDS YP_011008.1 46580200 2793316 complement(1854518..1856833) 1 NC_002937.3 identified by match to protein family HMM PF00488; match to protein family HMM PF01713; MutS2 family protein 1856833 2793316 DVU1790 Desulfovibrio vulgaris str. Hildenborough MutS2 family protein YP_011008.1 1854518 R 882 CDS YP_011009.1 46580201 2793317 complement(1856840..1857289) 1 NC_002937.3 identified by match to protein family HMM PF02637; GatB/Yqey family protein 1857289 2793317 DVU1791 Desulfovibrio vulgaris str. Hildenborough GatB/Yqey family protein YP_011009.1 1856840 R 882 CDS YP_011010.2 161343883 2793318 complement(1857405..1857608) 1 NC_002937.3 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1857608 rpsU 2793318 rpsU Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S21 YP_011010.2 1857405 R 882 CDS YP_011011.1 46580203 2793319 complement(1857614..1857712) 1 NC_002937.3 hypothetical protein 1857712 2793319 DVU1793 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011011.1 1857614 R 882 CDS YP_011012.1 46580204 2793320 complement(1857725..1857928) 1 NC_002937.3 hypothetical protein 1857928 2793320 DVU1794 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011012.1 1857725 R 882 CDS YP_011013.1 46580205 2793321 complement(1857939..1858211) 1 NC_002937.3 identified by similarity to SP:P02341; similarity to SP:P28080; match to protein family HMM PF00216; DNA-binding protein HU 1858211 hup-3 2793321 hup-3 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein HU YP_011013.1 1857939 R 882 CDS YP_011014.1 46580206 2796705 complement(1858208..1858330) 1 NC_002937.3 hypothetical protein 1858330 2796705 DVU1796 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011014.1 1858208 R 882 CDS YP_011015.2 304569709 2796706 complement(1858413..1859288) 1 NC_002937.3 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1859288 ksgA 2796706 ksgA Desulfovibrio vulgaris str. Hildenborough dimethyladenosine transferase YP_011015.2 1858413 R 882 CDS YP_011016.1 46580208 2796707 complement(1859305..1859820) 1 NC_002937.3 identified by similarity to OMNI:NTL01TE0138; hypothetical protein 1859820 2796707 DVU1798 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011016.1 1859305 R 882 CDS YP_011017.1 46580209 2796708 complement(1859827..1861875) 1 NC_002937.3 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1861875 fusA-2 2796708 fusA-2 Desulfovibrio vulgaris str. Hildenborough elongation factor G YP_011017.1 1859827 R 882 CDS YP_003858615.1 304569746 9714859 complement(1861868..1862815) 1 NC_002937.3 hypothetical protein 1862815 9714859 DVU4005 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858615.1 1861868 R 882 CDS YP_011019.1 46580211 2796710 complement(1863082..1864269) 1 NC_002937.3 hypothetical protein 1864269 2796710 DVU1801 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011019.1 1863082 R 882 CDS YP_011020.1 46580212 2796711 1864479..1865339 1 NC_002937.3 identified by similarity to OMNI:NTL01RS2082; hypothetical protein 1865339 2796711 DVU1802 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011020.1 1864479 D 882 CDS YP_011021.1 46580213 2796712 complement(1865370..1866458) 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1866458 2796712 DVU1803 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_011021.1 1865370 R 882 CDS YP_011022.1 46580214 2796713 complement(1866458..1868287) 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1868287 2796713 DVU1804 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_011022.1 1866458 R 882 CDS YP_011023.1 46580215 2796714 1868457..1869920 1 NC_002937.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1869920 2796714 DVU1805 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_011023.1 1868457 D 882 CDS YP_011024.1 46580216 2796715 complement(1870156..1871526) 1 NC_002937.3 identified by similarity to OMNI:NTL03CP1240; match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 1871526 mgtE 2796715 mgtE Desulfovibrio vulgaris str. Hildenborough magnesium transporter YP_011024.1 1870156 R 882 CDS YP_011025.1 46580217 2796716 1871670..1872557 1 NC_002937.3 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 1872557 nadC 2796716 nadC Desulfovibrio vulgaris str. Hildenborough nicotinate-nucleotide pyrophosphorylase YP_011025.1 1871670 D 882 CDS YP_011026.1 46580218 2796637 1872554..1873630 1 NC_002937.3 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1873630 nadA 2796637 nadA Desulfovibrio vulgaris str. Hildenborough quinolinate synthetase YP_011026.1 1872554 D 882 CDS YP_011027.1 46580219 2796638 1873643..1875229 1 NC_002937.3 identified by similarity to SP:P10902; match to protein family HMM PF00890; match to protein family HMM TIGR00551; L-aspartate oxidase 1875229 nadB 2796638 nadB Desulfovibrio vulgaris str. Hildenborough L-aspartate oxidase YP_011027.1 1873643 D 882 CDS YP_011028.1 46580220 2796639 complement(1875340..1875762) 1 NC_002937.3 hypothetical protein 1875762 2796639 DVU1810 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011028.1 1875340 R 882 CDS YP_011029.1 46580221 2796640 complement(1875780..1876643) 1 NC_002937.3 identified by similarity to SP:P24009; match to protein family HMM PF01040; protoheme IX farnesyltransferase 1876643 2796640 DVU1811 Desulfovibrio vulgaris str. Hildenborough protoheme IX farnesyltransferase YP_011029.1 1875780 R 882 CDS YP_011030.1 46580222 2796641 complement(1876687..1877967) 1 NC_002937.3 identified by match to protein family HMM PF00116; cytochrome c oxidase subunit II 1877967 2796641 DVU1812 Desulfovibrio vulgaris str. Hildenborough cytochrome c oxidase subunit II YP_011030.1 1876687 R 882 CDS YP_011031.1 46580223 2796642 complement(1877977..1878270) 1 NC_002937.3 hypothetical protein 1878270 2796642 DVU1813 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011031.1 1877977 R 882 CDS YP_011032.1 46580224 2796643 complement(1878279..1878890) 1 NC_002937.3 identified by similarity to SP:P50677; match to protein family HMM PF00510; cytochrome c oxidase subunit III 1878890 2796643 DVU1814 Desulfovibrio vulgaris str. Hildenborough cytochrome c oxidase subunit III YP_011032.1 1878279 R 882 CDS YP_011033.1 46580225 2796644 complement(1878901..1880526) 1 NC_002937.3 identified by match to protein family HMM PF00115; cytochrome c oxidase subunit I 1880526 2796644 DVU1815 Desulfovibrio vulgaris str. Hildenborough cytochrome c oxidase subunit I YP_011033.1 1878901 R 882 CDS YP_011034.2 304569710 2796645 complement(1880550..1881671) 1 NC_002937.3 identified by similarity to GP:10185094; hypothetical protein 1881671 2796645 DVU1816 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011034.2 1880550 R 882 CDS YP_011035.1 46580227 2796646 complement(1881747..1882058) 1 NC_002937.3 identified by similarity to SP:P04032; match to protein family HMM PF00034; cytochrome c-553 1882058 cyf 2796646 cyf Desulfovibrio vulgaris str. Hildenborough cytochrome c-553 YP_011035.1 1881747 R 882 CDS YP_011036.1 46580228 2796647 complement(1882210..1883298) 1 NC_002937.3 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1883298 secF 2796647 secF Desulfovibrio vulgaris str. Hildenborough preprotein translocase subunit SecF YP_011036.1 1882210 R 882 CDS YP_011037.1 46580229 2793480 complement(1883311..1884909) 1 NC_002937.3 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1884909 secD 2793480 secD Desulfovibrio vulgaris str. Hildenborough preprotein translocase subunit SecD YP_011037.1 1883311 R 882 CDS YP_011038.1 46580230 2793481 complement(1885040..1885405) 1 NC_002937.3 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 1885405 yajC 2793481 yajC Desulfovibrio vulgaris str. Hildenborough preprotein translocase subunit YajC YP_011038.1 1885040 R 882 CDS YP_011039.1 46580231 2793482 complement(1885906..1886661) 1 NC_002937.3 identified by similarity to OMNI:TM0394; match to protein family HMM PF01493; hypothetical protein 1886661 2793482 DVU1821 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011039.1 1885906 R 882 CDS YP_011040.1 46580232 2793483 complement(1886664..1887758) 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0760; match to protein family HMM PF00310; glutamate synthase 1887758 2793483 DVU1822 Desulfovibrio vulgaris str. Hildenborough glutamate synthase YP_011040.1 1886664 R 882 CDS YP_011041.1 46580233 2793484 complement(1887773..1889296) 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF01645; glutamate synthase 1889296 2793484 DVU1823 Desulfovibrio vulgaris str. Hildenborough glutamate synthase YP_011041.1 1887773 R 882 CDS YP_011042.1 46580234 2793485 complement(1889515..1890279) 1 NC_002937.3 hypothetical protein 1890279 2793485 DVU1824 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011042.1 1889515 R 882 CDS YP_011043.1 46580235 2793486 1890462..1891790 1 NC_002937.3 identified by match to protein family HMM PF01979; amidohydrolase 1891790 2793486 DVU1825 Desulfovibrio vulgaris str. Hildenborough amidohydrolase YP_011043.1 1890462 D 882 CDS YP_011044.1 46580236 2793487 1891930..1892202 1 NC_002937.3 hypothetical protein 1892202 2793487 DVU1826 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011044.1 1891930 D 882 CDS YP_011045.1 46580237 2793488 1892330..1893553 1 NC_002937.3 catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate; diaminopimelate aminotransferase 1893553 2793488 DVU1827 Desulfovibrio vulgaris str. Hildenborough diaminopimelate aminotransferase YP_011045.1 1892330 D 882 CDS YP_011046.1 46580238 2793489 1893556..1895445 1 NC_002937.3 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1895445 gidA 2793489 gidA Desulfovibrio vulgaris str. Hildenborough tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_011046.1 1893556 D 882 CDS YP_011047.1 46580239 2793490 complement(1895451..1895606) 1 NC_002937.3 hypothetical protein 1895606 2793490 DVU1829 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011047.1 1895451 R 882 CDS YP_011048.1 46580240 2793491 1895706..1896770 1 NC_002937.3 hypothetical protein 1896770 2793491 DVU1830 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011048.1 1895706 D 882 CDS YP_011049.1 46580241 2796466 1898045..1898146 1 NC_002937.3 hypothetical protein 1898146 2796466 DVU1832 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011049.1 1898045 D 882 CDS YP_011050.1 46580242 2796467 complement(1898486..1902061) 1 NC_002937.3 identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; phosphoenolpyruvate synthase 1902061 2796467 DVU1833 Desulfovibrio vulgaris str. Hildenborough phosphoenolpyruvate synthase YP_011050.1 1898486 R 882 CDS YP_011051.2 304569711 2796468 complement(1902205..1905909) 1 NC_002937.3 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1905909 2796468 DVU1834 Desulfovibrio vulgaris str. Hildenborough pyruvate carboxylase YP_011051.2 1902205 R 882 CDS YP_011052.2 304569712 2796469 complement(1905994..1906926) 1 NC_002937.3 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin--acetyl-CoA-carboxylase ligase 1906926 2796469 DVU1835 Desulfovibrio vulgaris str. Hildenborough biotin--acetyl-CoA-carboxylase ligase YP_011052.2 1905994 R 882 CDS YP_011053.1 46580245 2796470 1906976..1908127 1 NC_002937.3 identified by match to protein family HMM PF01743; tRNA nucleotidyltransferase 1908127 2796470 DVU1836 Desulfovibrio vulgaris str. Hildenborough tRNA nucleotidyltransferase YP_011053.1 1906976 D 882 CDS YP_011054.1 46580246 2796471 complement(1908228..1909010) 1 NC_002937.3 identified by similarity to SP:Q50985; match to protein family HMM PF03696; competence protein 1909010 2796471 DVU1837 Desulfovibrio vulgaris str. Hildenborough competence protein YP_011054.1 1908228 R 882 CDS YP_011055.1 46580247 2796472 complement(1908952..1909875) 1 NC_002937.3 identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 1909875 trxB-2 2796472 trxB-2 Desulfovibrio vulgaris str. Hildenborough thioredoxin-disulfide reductase YP_011055.1 1908952 R 882 CDS YP_011056.1 46580248 2796473 complement(1909875..1910198) 1 NC_002937.3 identified by similarity to SP:P06544; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1910198 trx 2796473 trx Desulfovibrio vulgaris str. Hildenborough thioredoxin YP_011056.1 1909875 R 882 CDS YP_011057.1 46580249 2796474 complement(1910311..1911396) 1 NC_002937.3 identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329; glycoprotease metalloendopeptidase 1911396 2796474 DVU1840 Desulfovibrio vulgaris str. Hildenborough glycoprotease metalloendopeptidase YP_011057.1 1910311 R 882 CDS YP_011058.1 46580250 2796475 complement(1911438..1912451) 1 NC_002937.3 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1912451 fbp 2796475 fbp Desulfovibrio vulgaris str. Hildenborough fructose-1,6-bisphosphatase YP_011058.1 1911438 R 882 CDS YP_011059.1 46580251 2796476 complement(1912544..1913500) 1 NC_002937.3 lipoprotein 1913500 2796476 DVU1842 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011059.1 1912544 R 882 CDS YP_011060.1 46580252 2795906 complement(1913546..1914499) 1 NC_002937.3 hypothetical protein 1914499 2795906 DVU1843 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011060.1 1913546 R 882 CDS YP_011061.1 46580253 2795907 complement(1914483..1914812) 1 NC_002937.3 identified by match to protein family HMM PF04977; septum formation initiator family protein 1914812 2795907 DVU1844 Desulfovibrio vulgaris str. Hildenborough septum formation initiator family protein YP_011061.1 1914483 R 882 CDS YP_011062.1 46580254 2795908 complement(1914809..1915081) 1 NC_002937.3 hypothetical protein 1915081 2795908 DVU1845 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011062.1 1914809 R 882 CDS YP_011063.1 46580255 2795909 complement(1915111..1915668) 1 NC_002937.3 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1915668 pgsA 2795909 pgsA Desulfovibrio vulgaris str. Hildenborough CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_011063.1 1915111 R 882 CDS YP_011064.1 46580256 2795910 complement(1915787..1916680) 1 NC_002937.3 identified by similarity to SP:Q57731; hypothetical protein 1916680 2795910 DVU1847 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011064.1 1915787 R 882 CDS YP_011065.1 46580257 2795911 complement(1916843..1917436) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA05518; match to protein family HMM PF00597; hypothetical protein 1917436 2795911 DVU1848 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011065.1 1916843 R 882 CDS YP_011066.1 46580258 2795912 complement(1917440..1918072) 1 NC_002937.3 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase 1918072 pcm 2795912 pcm Desulfovibrio vulgaris str. Hildenborough protein-L-isoaspartate O-methyltransferase YP_011066.1 1917440 R 882 CDS YP_011067.1 46580259 2795913 1918297..1918725 1 NC_002937.3 identified by match to protein family HMM PF00571; hypothetical protein 1918725 2795913 DVU1850 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011067.1 1918297 D 882 CDS YP_011068.1 46580260 2795914 1918806..1920128 1 NC_002937.3 identified by match to protein family HMM PF01551; M24/M37 family peptidase 1920128 2795914 DVU1851 Desulfovibrio vulgaris str. Hildenborough M24/M37 family peptidase YP_011068.1 1918806 D 882 CDS YP_011069.1 46580261 2795915 1920283..1920894 1 NC_002937.3 identified by similarity to SP:Q10785; hypothetical protein 1920894 2795915 DVU1852 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011069.1 1920283 D 882 CDS YP_011070.1 46580262 2795916 complement(1921076..1921372) 1 NC_002937.3 hypothetical protein 1921372 2795916 DVU1853 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011070.1 1921076 R 882 CDS YP_011071.1 46580263 2795917 1921449..1922141 1 NC_002937.3 hypothetical protein 1922141 2795917 DVU1854 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011071.1 1921449 D 882 CDS YP_011072.1 46580264 2793637 1922796..1923116 1 NC_002937.3 integrase, truncation 1923116 2793637 DVU1855 Desulfovibrio vulgaris str. Hildenborough integrase, truncation YP_011072.1 1922796 D 882 CDS YP_011073.1 46580265 2793638 complement(1923251..1923439) 1 NC_002937.3 hypothetical protein 1923439 2793638 DVU1856 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011073.1 1923251 R 882 CDS YP_011074.1 46580266 2793639 complement(1923475..1925562) 1 NC_002937.3 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1925562 2793639 DVU1857 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011074.1 1923475 R 882 CDS YP_011075.1 46580267 2793640 complement(1925817..1926353) 1 NC_002937.3 identified by match to protein family HMM PF00313; cold shock domain-containing protein 1926353 2793640 DVU1858 Desulfovibrio vulgaris str. Hildenborough cold shock domain-containing protein YP_011075.1 1925817 R 882 CDS YP_011076.1 46580268 2793641 1926709..1926834 1 NC_002937.3 hypothetical protein 1926834 2793641 DVU1859 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011076.1 1926709 D 882 CDS YP_011077.1 46580269 2793642 1926819..1928327 1 NC_002937.3 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1928327 lnt 2793642 lnt Desulfovibrio vulgaris str. Hildenborough apolipoprotein N-acyltransferase YP_011077.1 1926819 D 882 CDS YP_011078.1 46580270 2793643 join(1928351..1928425,1928427..1929467) 1 NC_002937.3 identified by similarity to SP:P28367; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift 1929467 prfB 2793643 prfB Desulfovibrio vulgaris str. Hildenborough peptide chain release factor 2, programmed frameshift YP_011078.1 1928351 D 882 CDS YP_011079.1 46580271 2793644 1929448..1930443 1 NC_002937.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1930443 2793644 DVU1862 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_011079.1 1929448 D 882 CDS YP_011080.1 46580272 2793645 1930440..1931258 1 NC_002937.3 identified by similarity to OMNI:NTL03PA01455; flagellar synthesis regulator FleN 1931258 2793645 DVU1863 Desulfovibrio vulgaris str. Hildenborough flagellar synthesis regulator FleN YP_011080.1 1930440 D 882 CDS YP_011081.1 46580273 2793646 1931333..1931614 1 NC_002937.3 identified by similarity to SP:P08821; match to protein family HMM PF00216; DNA-binding protein HU subunit beta 1931614 2793646 DVU1864 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein HU subunit beta YP_011081.1 1931333 D 882 CDS YP_011082.1 46580274 2794309 1931601..1931741 1 NC_002937.3 hypothetical protein 1931741 2794309 DVU1865 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011082.1 1931601 D 882 CDS YP_011083.1 46580275 2794310 1931793..1932494 1 NC_002937.3 hypothetical protein 1932494 2794310 DVU1866 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011083.1 1931793 D 882 CDS YP_011084.1 46580276 2794311 1932520..1933368 1 NC_002937.3 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1933368 dapF 2794311 dapF Desulfovibrio vulgaris str. Hildenborough diaminopimelate epimerase YP_011084.1 1932520 D 882 CDS YP_011085.1 46580277 2794312 1933424..1934302 1 NC_002937.3 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1934302 dapA 2794312 dapA Desulfovibrio vulgaris str. Hildenborough dihydrodipicolinate synthase YP_011085.1 1933424 D 882 CDS YP_011086.1 46580278 2794313 1934675..1936990 1 NC_002937.3 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1936990 2794313 DVU1869 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011086.1 1934675 D 882 CDS YP_011087.1 46580279 2794314 complement(1937100..1937897) 1 NC_002937.3 identified by match to protein family HMM PF04199; cyclase 1937897 2794314 DVU1870 Desulfovibrio vulgaris str. Hildenborough cyclase YP_011087.1 1937100 R 882 CDS YP_011088.1 46580280 2794315 complement(1938152..1939558) 1 NC_002937.3 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 1939558 aspA 2794315 aspA Desulfovibrio vulgaris str. Hildenborough aspartate ammonia-lyase YP_011088.1 1938152 R 882 CDS YP_011089.1 46580281 2794316 complement(1939633..1940058) 1 NC_002937.3 hypothetical protein 1940058 2794316 DVU1872 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011089.1 1939633 R 882 CDS YP_011090.2 304569713 2794317 complement(1940074..1940646) 1 NC_002937.3 identified by similarity to SP:P23869; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 1940646 ppiB-2 2794317 ppiB-2 Desulfovibrio vulgaris str. Hildenborough peptidyl-prolyl cis-trans isomerase B YP_011090.2 1940074 R 882 CDS YP_011091.1 46580283 2794318 complement(1940871..1943468) 1 NC_002937.3 identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB 1943468 clpB 2794318 clpB Desulfovibrio vulgaris str. Hildenborough ATP-dependent Clp protease, ATP-binding subunit ClpB YP_011091.1 1940871 R 882 CDS YP_011092.1 46580284 2794319 complement(1943493..1943810) 1 NC_002937.3 identified by similarity to SP:P77527; dafA protein 1943810 2794319 DVU1875 Desulfovibrio vulgaris str. Hildenborough dafA protein YP_011092.1 1943493 R 882 CDS YP_011093.1 46580285 2794320 complement(1943843..1944793) 1 NC_002937.3 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF01556; dnaJ protein 1944793 2794320 DVU1876 Desulfovibrio vulgaris str. Hildenborough dnaJ protein YP_011093.1 1943843 R 882 CDS YP_011094.1 46580286 2793546 1944936..1946036 1 NC_002937.3 identified by match to protein family HMM PF01522; polysaccharide deacetylase 1946036 2793546 DVU1877 Desulfovibrio vulgaris str. Hildenborough polysaccharide deacetylase YP_011094.1 1944936 D 882 CDS YP_011095.1 46580287 2793547 complement(1946235..1947257) 1 NC_002937.3 identified by similarity to SP:O50584; threonine aldolase 1947257 ltaE 2793547 ltaE Desulfovibrio vulgaris str. Hildenborough threonine aldolase YP_011095.1 1946235 R 882 CDS YP_011096.1 46580288 2793548 complement(1947269..1948369) 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1948369 2793548 DVU1879 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_011096.1 1947269 R 882 CDS YP_011097.1 46580289 2793549 complement(1948764..1949405) 1 NC_002937.3 hypothetical protein 1949405 2793549 DVU1880 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011097.1 1948764 R 882 CDS YP_011098.1 46580290 2793550 1949567..1950583 1 NC_002937.3 identified by similarity to SP:P46343; match to protein family HMM PF02562; phoH family protein 1950583 2793550 DVU1881 Desulfovibrio vulgaris str. Hildenborough phoH family protein YP_011098.1 1949567 D 882 CDS YP_011099.1 46580291 2793551 1950678..1953038 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0909; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 1953038 2793551 DVU1882 Desulfovibrio vulgaris str. Hildenborough HDIG domain-containing protein YP_011099.1 1950678 D 882 CDS YP_011100.1 46580292 2793552 1953035..1953523 1 NC_002937.3 identified by similarity to SP:P71335; match to protein family HMM PF02130; hypothetical protein 1953523 2793552 DVU1883 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011100.1 1953035 D 882 CDS YP_011101.1 46580293 2793553 complement(1953750..1956152) 1 NC_002937.3 identified by similarity to OMNI:VCA1056; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1956152 2793553 DVU1884 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011101.1 1953750 R 882 CDS YP_011102.1 46580294 2793554 complement(1956477..1957907) 1 NC_002937.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1957907 gatB 2793554 gatB Desulfovibrio vulgaris str. Hildenborough aspartyl/glutamyl-tRNA amidotransferase subunit B YP_011102.1 1956477 R 882 CDS YP_011103.1 46580295 2793555 complement(1957910..1958587) 1 NC_002937.3 hypothetical protein 1958587 2793555 DVU1886 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011103.1 1957910 R 882 CDS YP_011104.1 46580296 2793556 complement(1958609..1960351) 1 NC_002937.3 hypothetical protein 1960351 2793556 DVU1887 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011104.1 1958609 R 882 CDS YP_011105.1 46580297 2793557 complement(1960433..1961332) 1 NC_002937.3 identified by match to protein family HMM PF01513; ATP-NAD kinase domain-containing protein 1961332 2793557 DVU1888 Desulfovibrio vulgaris str. Hildenborough ATP-NAD kinase domain-containing protein YP_011105.1 1960433 R 882 CDS YP_011106.1 46580298 2793558 1961468..1962094 1 NC_002937.3 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1962094 gmhA 2793558 gmhA Desulfovibrio vulgaris str. Hildenborough phosphoheptose isomerase YP_011106.1 1961468 D 882 CDS YP_011107.1 46580299 2794701 1962409..1963356 1 NC_002937.3 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1963356 hemC 2794701 hemC Desulfovibrio vulgaris str. Hildenborough porphobilinogen deaminase YP_011107.1 1962409 D 882 CDS YP_011108.1 46580300 2794702 complement(1963699..1964460) 1 NC_002937.3 identified by similarity to OMNI:NTL01NS1759; match to protein family HMM PF05143; hypothetical protein 1964460 2794702 DVU1891 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011108.1 1963699 R 882 CDS YP_011109.1 46580301 2794703 complement(1964430..1965179) 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1965179 2794703 DVU1892 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_011109.1 1964430 R 882 CDS YP_011110.1 46580302 2794704 1965307..1967727 1 NC_002937.3 identified by match to protein family HMM PF05362; ATP-dependent protease 1967727 2794704 DVU1893 Desulfovibrio vulgaris str. Hildenborough ATP-dependent protease YP_011110.1 1965307 D 882 CDS YP_011111.1 46580303 2794705 complement(1967938..1968156) 1 NC_002937.3 hypothetical protein 1968156 2794705 DVU1894 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011111.1 1967938 R 882 CDS YP_011112.1 46580304 2794706 1968364..1969530 1 NC_002937.3 identified by similarity to OMNI:NTL02MA0180; match to protein family HMM PF00083; major facilitator superfamily protein 1969530 2794706 DVU1895 Desulfovibrio vulgaris str. Hildenborough major facilitator superfamily protein YP_011112.1 1968364 D 882 CDS YP_011113.1 46580305 2794707 complement(1970096..1970359) 1 NC_002937.3 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1970359 rpsT 2794707 rpsT Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S20 YP_011113.1 1970096 R 882 CDS YP_011114.1 46580306 2794708 complement(1970475..1972565) 1 NC_002937.3 identified by match to protein family HMM PF02092; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta 1972565 glyS 2794708 glyS Desulfovibrio vulgaris str. Hildenborough glycyl-tRNA synthetase subunit beta YP_011114.1 1970475 R 882 CDS YP_011115.1 46580307 2794709 complement(1972583..1973452) 1 NC_002937.3 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1973452 glyQ 2794709 glyQ Desulfovibrio vulgaris str. Hildenborough glycyl-tRNA synthetase subunit alpha YP_011115.1 1972583 R 882 CDS YP_011116.1 46580308 2794710 complement(1973502..1974257) 1 NC_002937.3 identified by match to protein family HMM PF02565; DNA repair protein RecO 1974257 2794710 DVU1899 Desulfovibrio vulgaris str. Hildenborough DNA repair protein RecO YP_011116.1 1973502 R 882 CDS YP_011117.1 46580309 2794711 complement(1974260..1975201) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA03804; hypothetical protein 1975201 2794711 DVU1900 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011117.1 1974260 R 882 CDS YP_011118.1 46580310 2794712 complement(1975298..1976344) 1 NC_002937.3 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein 1976344 2794712 DVU1901 Desulfovibrio vulgaris str. Hildenborough peptidyl-prolyl cis-trans isomerase domain-containing protein YP_011118.1 1975298 R 882 CDS YP_011119.1 46580311 2793675 complement(1976382..1977320) 1 NC_002937.3 identified by similarity to OMNI:NTL01YP0471; hypothetical protein 1977320 2793675 DVU1902 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011119.1 1976382 R 882 CDS YP_011120.1 46580312 2793676 complement(1977379..1980861) 1 NC_002937.3 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor 1980861 mfd 2793676 mfd Desulfovibrio vulgaris str. Hildenborough transcription-repair coupling factor YP_011120.1 1977379 R 882 CDS YP_011121.1 46580313 2793677 complement(1980940..1981416) 1 NC_002937.3 identified by similarity to SP:P07365; match to protein family HMM PF01584; chemotaxis protein CheW 1981416 cheW-2 2793677 cheW-2 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheW YP_011121.1 1980940 R 882 CDS YP_011122.1 46580314 2793678 1981437..1981865 1 NC_002937.3 hypothetical protein 1981865 2793678 DVU1905 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011122.1 1981437 D 882 CDS YP_011123.1 46580315 2793679 1981946..1982062 1 NC_002937.3 hypothetical protein 1982062 2793679 DVU1906 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011123.1 1981946 D 882 CDS YP_011124.1 46580316 2793680 complement(1982240..1983577) 1 NC_002937.3 identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose 6-dehydrogenase 1983577 ugd 2793680 ugd Desulfovibrio vulgaris str. Hildenborough UDP-glucose 6-dehydrogenase YP_011124.1 1982240 R 882 CDS YP_011125.1 46580317 2793681 1983729..1984454 1 NC_002937.3 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1984454 pdxJ 2793681 pdxJ Desulfovibrio vulgaris str. Hildenborough pyridoxine 5'-phosphate synthase YP_011125.1 1983729 D 882 CDS YP_011126.1 46580318 2793682 1984465..1984839 1 NC_002937.3 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1984839 acpS 2793682 acpS Desulfovibrio vulgaris str. Hildenborough 4'-phosphopantetheinyl transferase YP_011126.1 1984465 D 882 CDS YP_011127.1 46580319 2793683 1984961..1986685 1 NC_002937.3 identified by similarity to GP:9105649; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; YjeF-like protein 1986685 2793683 DVU1910 Desulfovibrio vulgaris str. Hildenborough YjeF-like protein YP_011127.1 1984961 D 882 CDS YP_011128.1 46580320 2793684 1986678..1987130 1 NC_002937.3 identified by similarity to OMNI:NTL01TE1801; match to protein family HMM PF00571; hypothetical protein 1987130 2793684 DVU1911 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011128.1 1986678 D 882 CDS YP_011129.1 46580321 2793685 1987143..1987631 1 NC_002937.3 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1987631 2793685 DVU1912 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011129.1 1987143 D 882 CDS YP_011130.1 46580322 2793686 1987690..1988916 1 NC_002937.3 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1988916 2793686 DVU1913 Desulfovibrio vulgaris str. Hildenborough aspartate kinase YP_011130.1 1987690 D 882 CDS YP_011131.1 46580323 2793687 1988931..1990547 1 NC_002937.3 catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA; alpha-isopropylmalate/homocitrate synthase transferase 1990547 2793687 DVU1914 Desulfovibrio vulgaris str. Hildenborough alpha-isopropylmalate/homocitrate synthase transferase YP_011131.1 1988931 D 882 CDS YP_011132.1 46580324 2793331 complement(1990589..1990864) 1 NC_002937.3 hypothetical protein 1990864 2793331 DVU1915 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011132.1 1990589 R 882 CDS YP_011133.1 46580325 2793332 complement(1990842..1990973) 1 NC_002937.3 hypothetical protein 1990973 2793332 DVU1916 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011133.1 1990842 R 882 CDS YP_011134.1 46580326 2793333 1991067..1992020 1 NC_002937.3 identified by similarity to SP:P13063; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; periplasmic [NiFeSe] hydrogenase small subunit 1992020 hysB 2793333 hysB Desulfovibrio vulgaris str. Hildenborough periplasmic [NiFeSe] hydrogenase small subunit YP_011134.1 1991067 D 882 CDS YP_011135.1 46580327 2793334 1992054..1993586 1 NC_002937.3 selenoprotein; identified by match to protein family HMM PF00374; periplasmic [NiFeSe] hydrogenase large subunit, selenocysteine-containing 1993586 hysA 2793334 hysA Desulfovibrio vulgaris str. Hildenborough periplasmic [NiFeSe] hydrogenase large subunit, selenocysteine-containing YP_011135.1 1992054 D 882 CDS YP_011136.1 46580328 2793335 1993855..1994325 1 NC_002937.3 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase expression/formation protein 1994325 2793335 DVU1919 Desulfovibrio vulgaris str. Hildenborough hydrogenase expression/formation protein YP_011136.1 1993855 D 882 CDS YP_011137.1 46580329 2793336 complement(1994456..1994581) 1 NC_002937.3 hypothetical protein 1994581 2793336 DVU1920 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011137.1 1994456 R 882 CDS YP_011138.1 46580330 2793337 1994643..1995596 1 NC_002937.3 identified by similarity to SP:P21853; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; periplasmic [NiFe] hydrogenase small subunit, isozyme 1 1995596 hynB-1 2793337 hynB-1 Desulfovibrio vulgaris str. Hildenborough periplasmic [NiFe] hydrogenase small subunit, isozyme 1 YP_011138.1 1994643 D 882 CDS YP_011139.1 46580331 2793338 1995648..1997348 1 NC_002937.3 identified by similarity to SP:P21852; match to protein family HMM PF00374; periplasmic [NiFe] hydrogenase large subunit, isozyme 1 1997348 hynA-1 2793338 hynA-1 Desulfovibrio vulgaris str. Hildenborough periplasmic [NiFe] hydrogenase large subunit, isozyme 1 YP_011139.1 1995648 D 882 CDS YP_011140.1 46580332 2793339 1997717..1998214 1 NC_002937.3 identified by similarity to SP:P31909; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; hydrogenase expression/formation protein HupD 1998214 hupD 2793339 hupD Desulfovibrio vulgaris str. Hildenborough hydrogenase expression/formation protein HupD YP_011140.1 1997717 D 882 CDS YP_011141.1 46580333 2793340 1998226..1998477 1 NC_002937.3 identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 1998477 hypC 2793340 hypC Desulfovibrio vulgaris str. Hildenborough hydrogenase assembly chaperone HypC/HupF YP_011141.1 1998226 D 882 CDS YP_011142.1 46580334 2793341 1998495..1999136 1 NC_002937.3 identified by similarity to SP:Q07792; match to protein family HMM PF00657; GDSL family lipase 1999136 2793341 DVU1925 Desulfovibrio vulgaris str. Hildenborough GDSL family lipase YP_011142.1 1998495 D 882 CDS YP_011143.1 46580335 2793342 1999118..1999606 1 NC_002937.3 identified by similarity to GP:3482869; hypothetical protein 1999606 2793342 DVU1926 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011143.1 1999118 D 882 CDS YP_011144.1 46580336 2795304 1999840..2002656 1 NC_002937.3 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 2002656 ileS 2795304 ileS Desulfovibrio vulgaris str. Hildenborough isoleucyl-tRNA synthetase YP_011144.1 1999840 D 882 CDS YP_011145.1 46580337 2795305 2002720..2003217 1 NC_002937.3 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2003217 lspA 2795305 lspA Desulfovibrio vulgaris str. Hildenborough lipoprotein signal peptidase YP_011145.1 2002720 D 882 CDS YP_011146.1 46580338 2795306 2003220..2003417 1 NC_002937.3 hypothetical protein 2003417 2795306 DVU1929 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011146.1 2003220 D 882 CDS YP_011147.1 46580339 2795307 2003452..2004390 1 NC_002937.3 hypothetical protein 2004390 2795307 DVU1930 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011147.1 2003452 D 882 CDS YP_011148.1 46580340 2795308 2004416..2004859 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 2004859 2795308 DVU1931 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_011148.1 2004416 D 882 CDS YP_011149.1 46580341 2795309 2005343..2006014 1 NC_002937.3 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2006014 adk 2795309 adk Desulfovibrio vulgaris str. Hildenborough adenylate kinase YP_011149.1 2005343 D 882 CDS YP_011150.1 46580342 2795310 complement(2006535..2007056) 1 NC_002937.3 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; PfpI family peptidase 2007056 2795310 DVU1933 Desulfovibrio vulgaris str. Hildenborough PfpI family peptidase YP_011150.1 2006535 R 882 CDS YP_011151.1 46580343 2795311 complement(2007149..2007949) 1 NC_002937.3 identified by similarity to SP:P16683; match to protein family HMM PF00528; phosphonate ABC transporter permease 2007949 2795311 DVU1934 Desulfovibrio vulgaris str. Hildenborough phosphonate ABC transporter permease YP_011151.1 2007149 R 882 CDS YP_011152.1 46580344 2795312 complement(2007946..2008743) 1 NC_002937.3 identified by similarity to SP:P16683; match to protein family HMM PF00528; phosphonate ABC transporter permease 2008743 2795312 DVU1935 Desulfovibrio vulgaris str. Hildenborough phosphonate ABC transporter permease YP_011152.1 2007946 R 882 CDS YP_011153.1 46580345 2795313 complement(2008731..2009528) 1 NC_002937.3 identified by similarity to SP:P16677; match to protein family HMM PF00005; phosphonate ABC transporter ATP-binding protein 2009528 2795313 DVU1936 Desulfovibrio vulgaris str. Hildenborough phosphonate ABC transporter ATP-binding protein YP_011153.1 2008731 R 882 CDS YP_011154.1 46580346 2795314 complement(2009605..2010618) 1 NC_002937.3 identified by similarity to SP:P16682; phosphonate ABC transporter periplasmic phosphonate-binding protein 2010618 2795314 DVU1937 Desulfovibrio vulgaris str. Hildenborough phosphonate ABC transporter periplasmic phosphonate-binding protein YP_011154.1 2009605 R 882 CDS YP_011155.1 46580347 2795315 complement(2010900..2011175) 1 NC_002937.3 hypothetical protein 2011175 2795315 DVU1938 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011155.1 2010900 R 882 CDS YP_011156.1 46580348 2795316 complement(2011221..2012504) 1 NC_002937.3 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2012504 2795316 DVU1939 Desulfovibrio vulgaris str. Hildenborough anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_011156.1 2011221 R 882 CDS YP_011157.1 46580349 2793512 complement(2012513..2014063) 1 NC_002937.3 identified by similarity to SP:P13032; match to protein family HMM PF01266; anaerobic glycerol-3-phosphate dehydrogenase subunit A 2014063 2793512 DVU1940 Desulfovibrio vulgaris str. Hildenborough anaerobic glycerol-3-phosphate dehydrogenase subunit A YP_011157.1 2012513 R 882 CDS YP_011158.1 46580350 2793513 complement(2014099..2014866) 1 NC_002937.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; HAD family hydrolase 2014866 2793513 DVU1941 Desulfovibrio vulgaris str. Hildenborough HAD family hydrolase YP_011158.1 2014099 R 882 CDS YP_011159.1 46580351 2793514 2015131..2017044 1 NC_002937.3 identified by match to protein family HMM PF02645; match to protein family HMM PF02734; match to protein family HMM TIGR00762; DAK2 and DegV domain-containing protein 2017044 2793514 DVU1942 Desulfovibrio vulgaris str. Hildenborough DAK2 and DegV domain-containing protein YP_011159.1 2015131 D 882 CDS YP_011160.1 46580352 2793515 2017131..2017364 1 NC_002937.3 hypothetical protein 2017364 2793515 DVU1943 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011160.1 2017131 D 882 CDS YP_011161.1 46580353 2793516 2017637..2017909 1 NC_002937.3 identified by match to protein family HMM PF00037; pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit 2017909 2793516 DVU1944 Desulfovibrio vulgaris str. Hildenborough pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit YP_011161.1 2017637 D 882 CDS YP_011162.1 46580354 2793517 2017911..2019059 1 NC_002937.3 Couples the complete acetyl-CoA oxidation to aromatic ring reduction by the use of the low-potential electron shuttle ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 2019059 2793517 DVU1945 Desulfovibrio vulgaris str. Hildenborough 2-oxoglutarate ferredoxin oxidoreductase subunit alpha YP_011162.1 2017911 D 882 CDS YP_011163.1 46580355 2793518 2019067..2019897 1 NC_002937.3 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 2019897 2793518 DVU1946 Desulfovibrio vulgaris str. Hildenborough 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_011163.1 2019067 D 882 CDS YP_011164.1 46580356 2793519 2019894..2020517 1 NC_002937.3 identified by match to protein family HMM PF01558; pyruvate ferredoxin oxidoreductase subunit gamma 2020517 2793519 DVU1947 Desulfovibrio vulgaris str. Hildenborough pyruvate ferredoxin oxidoreductase subunit gamma YP_011164.1 2019894 D 882 CDS YP_011165.1 46580357 2793520 2020528..2020818 1 NC_002937.3 identified by similarity to GP:29541639; hypothetical protein 2020818 2793520 DVU1948 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011165.1 2020528 D 882 CDS YP_011166.1 46580358 2793521 complement(2021083..2022672) 1 NC_002937.3 identified by similarity to SP:P27713; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; nif-specific regulatory protein 2022672 nifA-1 2793521 nifA-1 Desulfovibrio vulgaris str. Hildenborough nif-specific regulatory protein YP_011166.1 2021083 R 882 CDS YP_011167.1 46580359 2796185 complement(2022676..2023272) 1 NC_002937.3 identified by similarity to SP:O07836; match to protein family HMM PF01558; indolepyruvate ferredoxin oxidoreductase subunit beta 2023272 2796185 DVU1950 Desulfovibrio vulgaris str. Hildenborough indolepyruvate ferredoxin oxidoreductase subunit beta YP_011167.1 2022676 R 882 CDS YP_011168.1 46580360 2796186 complement(2023272..2025122) 1 NC_002937.3 identified by similarity to SP:O07835; indolepyruvate ferredoxin oxidoreductase subunit alpha 2025122 2796186 DVU1951 Desulfovibrio vulgaris str. Hildenborough indolepyruvate ferredoxin oxidoreductase subunit alpha YP_011168.1 2023272 R 882 CDS YP_011169.1 46580361 2793522 complement(2025171..2025866) 1 NC_002937.3 hypothetical protein 2025866 2793522 DVU1952 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011169.1 2025171 R 882 CDS YP_011170.1 46580362 2793523 2026227..2027486 1 NC_002937.3 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2027486 proA 2793523 proA Desulfovibrio vulgaris str. Hildenborough gamma-glutamyl phosphate reductase YP_011170.1 2026227 D 882 CDS YP_011171.1 46580363 2793467 2027512..2028216 1 NC_002937.3 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 2028216 nadD 2793467 nadD Desulfovibrio vulgaris str. Hildenborough nicotinate (nicotinamide) nucleotide adenylyltransferase YP_011171.1 2027512 D 882 CDS YP_011172.1 46580364 2793468 2028213..2029046 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 2029046 2793468 DVU1955 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011172.1 2028213 D 882 CDS YP_011173.1 46580365 2793469 complement(2029188..2030243) 1 NC_002937.3 identified by match to protein family HMM PF01075; heptosyltransferase 2030243 2793469 DVU1956 Desulfovibrio vulgaris str. Hildenborough heptosyltransferase YP_011173.1 2029188 R 882 CDS YP_011174.1 46580366 2793470 complement(2030240..2030386) 1 NC_002937.3 hypothetical protein 2030386 2793470 DVU1957 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011174.1 2030240 R 882 CDS YP_011175.1 46580367 2793471 2030405..2033002 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2033002 2793471 DVU1958 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_011175.1 2030405 D 882 CDS YP_011176.1 46580368 2793472 2033326..2035719 1 NC_002937.3 identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; EAL/GGDEF domain-containing protein 2035719 2793472 DVU1959 Desulfovibrio vulgaris str. Hildenborough EAL/GGDEF domain-containing protein YP_011176.1 2033326 D 882 CDS YP_011177.1 46580369 2793473 complement(2035941..2038034) 1 NC_002937.3 identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 2038034 cheA-2 2793473 cheA-2 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheA YP_011177.1 2035941 R 882 CDS YP_011178.1 46580370 2793474 complement(2038039..2038542) 1 NC_002937.3 identified by similarity to SP:P07365; match to protein family HMM PF01584; chemotaxis protein CheW 2038542 cheW-3 2793474 cheW-3 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheW YP_011178.1 2038039 R 882 CDS YP_011179.1 46580371 2793475 complement(2038551..2040713) 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2040713 2793475 DVU1962 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011179.1 2038551 R 882 CDS YP_011180.1 46580372 2793476 complement(2040758..2041039) 1 NC_002937.3 hypothetical protein 2041039 2793476 DVU1963 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011180.1 2040758 R 882 CDS YP_011181.1 46580373 2793477 complement(2041408..2041920) 1 NC_002937.3 identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family transcriptional regulator 2041920 2793477 DVU1964 Desulfovibrio vulgaris str. Hildenborough Rrf2 family transcriptional regulator YP_011181.1 2041408 R 882 CDS YP_011182.1 46580374 2793478 2041974..2042201 1 NC_002937.3 hypothetical protein 2042201 2793478 DVU1965 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011182.1 2041974 D 882 CDS YP_011183.1 46580375 2793479 complement(2042247..2042405) 1 NC_002937.3 hypothetical protein 2042405 2793479 DVU1966 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011183.1 2042247 R 882 CDS YP_011184.1 46580376 2795981 2042526..2043047 1 NC_002937.3 identified by similarity to SP:P33395; match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family transcriptional regulator 2043047 2795981 DVU1967 Desulfovibrio vulgaris str. Hildenborough Rrf2 family transcriptional regulator YP_011184.1 2042526 D 882 CDS YP_011185.1 46580377 2795982 2043063..2044304 1 NC_002937.3 oxidoreductase 2044304 2795982 DVU1968 Desulfovibrio vulgaris str. Hildenborough oxidoreductase YP_011185.1 2043063 D 882 CDS YP_011186.1 46580378 2795983 2044318..2045013 1 NC_002937.3 hypothetical protein 2045013 2795983 DVU1969 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011186.1 2044318 D 882 CDS YP_011187.1 46580379 2795984 2045022..2045429 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 2045429 2795984 DVU1970 Desulfovibrio vulgaris str. Hildenborough response regulator YP_011187.1 2045022 D 882 CDS YP_011188.1 46580380 2795985 complement(2045894..2046457) 1 NC_002937.3 identified by similarity to GP:5852329; hypothetical protein 2046457 2795985 DVU1971 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011188.1 2045894 R 882 CDS YP_011189.1 46580381 2795986 complement(2046806..2047000) 1 NC_002937.3 hypothetical protein 2047000 2795986 DVU1972 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011189.1 2046806 R 882 CDS YP_011190.1 46580382 2795987 2046999..2047847 1 NC_002937.3 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 2047847 2795987 DVU1973 Desulfovibrio vulgaris str. Hildenborough rhodanese-like domain-containing protein YP_011190.1 2046999 D 882 CDS YP_011191.1 46580383 2795988 2047840..2048943 1 NC_002937.3 identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 2048943 2795988 DVU1974 Desulfovibrio vulgaris str. Hildenborough pyridine nucleotide-disulfide oxidoreductase YP_011191.1 2047840 D 882 CDS YP_011192.1 46580384 2795989 complement(2049015..2050829) 1 NC_002937.3 identified by similarity to SP:P35841; match to protein family HMM PF00015; methyl-accepting chemotaxis protein 2050829 2795989 DVU1975 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011192.1 2049015 R 882 CDS YP_011193.1 46580385 2795990 complement(2050958..2052601) 1 NC_002937.3 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2052601 groEL 2795990 groEL Desulfovibrio vulgaris str. Hildenborough chaperonin GroEL YP_011193.1 2050958 R 882 CDS YP_011194.1 46580386 2795991 complement(2052641..2052928) 1 NC_002937.3 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2052928 groES 2795991 groES Desulfovibrio vulgaris str. Hildenborough co-chaperonin GroES YP_011194.1 2052641 R 882 CDS YP_011195.1 46580387 2795992 complement(2053213..2054535) 1 NC_002937.3 identified by similarity to OMNI:VCA0193; match to protein family HMM PF03553; Na+/H+ antiporter family protein 2054535 2795992 DVU1978 Desulfovibrio vulgaris str. Hildenborough Na+/H+ antiporter family protein YP_011195.1 2053213 R 882 CDS YP_011196.1 46580388 2795993 complement(2055072..2056997) 1 NC_002937.3 identified by similarity to SP:P43672; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2056997 2795993 DVU1979 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_011196.1 2055072 R 882 CDS YP_011197.1 46580389 2793786 2057153..2057545 1 NC_002937.3 hypothetical protein 2057545 2793786 DVU1980 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011197.1 2057153 D 882 CDS YP_011198.1 46580390 2793787 complement(2058023..2058514) 1 NC_002937.3 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 2058514 2793787 DVU1981 Desulfovibrio vulgaris str. Hildenborough nucleotide-binding protein YP_011198.1 2058023 R 882 CDS YP_011199.1 46580391 2793788 complement(2058879..2060267) 1 NC_002937.3 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase RhlE 2060267 rhlE 2793788 rhlE Desulfovibrio vulgaris str. Hildenborough ATP-dependent RNA helicase RhlE YP_011199.1 2058879 R 882 CDS YP_011200.1 46580392 2793789 2060785..2062008 1 NC_002937.3 hypothetical protein 2062008 2793789 DVU1983 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011200.1 2060785 D 882 CDS YP_011201.1 46580393 2793790 2062136..2062762 1 NC_002937.3 identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase MsrA 2062762 msrA 2793790 msrA Desulfovibrio vulgaris str. Hildenborough peptide methionine sulfoxide reductase MsrA YP_011201.1 2062136 D 882 CDS YP_011202.1 46580394 2793791 complement(2062872..2064128) 1 NC_002937.3 hypothetical protein 2064128 2793791 DVU1985 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011202.1 2062872 R 882 CDS YP_011203.1 46580395 2793792 2064529..2064960 1 NC_002937.3 identified by similarity to OMNI:MJ0989; hypothetical protein 2064960 2793792 DVU1986 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011203.1 2064529 D 882 CDS YP_011204.1 46580396 2793793 complement(2065139..2068009) 1 NC_002937.3 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 2068009 uvrA 2793793 uvrA Desulfovibrio vulgaris str. Hildenborough excinuclease ABC subunit A YP_011204.1 2065139 R 882 CDS YP_011205.1 46580397 2793794 complement(2068117..2068803) 1 NC_002937.3 identified by match to protein family HMM PF04474; hypothetical protein 2068803 2793794 DVU1988 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011205.1 2068117 R 882 CDS YP_011206.1 46580398 2793795 complement(2068825..2068926) 1 NC_002937.3 hypothetical protein 2068926 2793795 DVU1989 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011206.1 2068825 R 882 CDS YP_011207.1 46580399 2793796 2068980..2069627 1 NC_002937.3 hypothetical protein 2069627 2793796 DVU1990 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011207.1 2068980 D 882 CDS YP_011208.1 46580400 2793798 2070224..2071219 1 NC_002937.3 hypothetical protein 2071219 2793798 DVU1991 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011208.1 2070224 D 882 CDS YP_011209.1 46580401 2793431 complement(2071422..2072066) 1 NC_002937.3 identified by similarity to SP:P50868; match to protein family HMM PF00132; antibiotic acetyltransferase 2072066 2793431 DVU1992 Desulfovibrio vulgaris str. Hildenborough antibiotic acetyltransferase YP_011209.1 2071422 R 882 CDS YP_011210.1 46580402 2793432 complement(2072210..2074963) 1 NC_002937.3 identified by similarity to SP:Q10860; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase 2074963 2793432 DVU1993 Desulfovibrio vulgaris str. Hildenborough cation transporter E1-E2 family ATPase YP_011210.1 2072210 R 882 CDS YP_011211.1 46580403 2793433 2074975..2075109 1 NC_002937.3 hypothetical protein 2075109 2793433 DVU1994 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011211.1 2074975 D 882 CDS YP_011212.1 46580404 2793434 2076256..2076585 1 NC_002937.3 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor 2076585 2793434 DVU1995 Desulfovibrio vulgaris str. Hildenborough anti-anti-sigma factor YP_011212.1 2076256 D 882 CDS YP_011213.1 46580405 2793435 2077184..2077513 1 NC_002937.3 identified by similarity to GP:12024949; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein QacC 2077513 2793435 DVU1996 Desulfovibrio vulgaris str. Hildenborough quaternary ammonium compound-resistance protein QacC YP_011213.1 2077184 D 882 CDS YP_011214.1 46580406 2793436 complement(2078651..2078752) 1 NC_002937.3 hypothetical protein 2078752 2793436 DVU1997 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011214.1 2078651 R 882 CDS YP_011215.1 46580407 2793437 2079351..2079515 1 NC_002937.3 hypothetical protein 2079515 2793437 DVU1998 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011215.1 2079351 D 882 CDS YP_011216.1 46580408 2793438 2079560..2081704 1 NC_002937.3 identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740; sulfate transporter family protein 2081704 2793438 DVU1999 Desulfovibrio vulgaris str. Hildenborough sulfate transporter family protein YP_011216.1 2079560 D 882 CDS YP_011217.1 46580409 2793439 complement(2082654..2082743) 1 NC_002937.3 hypothetical protein 2082743 2793439 DVU2000 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011217.1 2082654 R 882 CDS YP_011218.1 46580410 2793441 2084394..2084816 1 NC_002937.3 hypothetical protein 2084816 2793441 DVU2002 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011218.1 2084394 D 882 CDS YP_011219.1 46580411 2793442 complement(2084977..2086239) 1 NC_002937.3 identified by match to protein family HMM PF01609; IS5 family transposase 2086239 2793442 DVU2003 Desulfovibrio vulgaris str. Hildenborough IS5 family transposase YP_011219.1 2084977 R 882 CDS YP_011220.1 46580412 2796726 2086357..2087406 1 NC_002937.3 identified by similarity to OMNI:SO3543; match to protein family HMM PF00665; ISDvu4, transposase 2087406 2796726 DVU2004 Desulfovibrio vulgaris str. Hildenborough ISDvu4, transposase YP_011220.1 2086357 D 882 CDS YP_011221.1 46580413 2796727 2087546..2087647 1 NC_002937.3 hypothetical protein 2087647 2796727 DVU2005 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011221.1 2087546 D 882 CDS YP_011222.1 46580414 2796728 complement(2087712..2087867) 1 NC_002937.3 hypothetical protein 2087867 2796728 DVU2006 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011222.1 2087712 R 882 CDS YP_011223.1 46580415 2796729 complement(2087978..2088394) 1 NC_002937.3 identified by match to protein family HMM PF00565; nuclease 2088394 2796729 DVU2007 Desulfovibrio vulgaris str. Hildenborough nuclease YP_011223.1 2087978 R 882 CDS YP_011224.1 46580416 2796730 complement(2088618..2088752) 1 NC_002937.3 hypothetical protein 2088752 2796730 DVU2008 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011224.1 2088618 R 882 CDS YP_011225.1 46580417 2796731 2088755..2089138 1 NC_002937.3 identified by similarity to OMNI:SO4260; hypothetical protein 2089138 2796731 DVU2009 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011225.1 2088755 D 882 CDS YP_011226.1 46580418 2796732 complement(2089119..2089943) 1 NC_002937.3 identified by match to protein family HMM PF00665; ISD1, transposase OrfB 2089943 2796732 DVU2010 Desulfovibrio vulgaris str. Hildenborough ISD1, transposase OrfB YP_011226.1 2089119 R 882 CDS YP_011227.1 46580419 2796733 complement(2089964..2090230) 1 NC_002937.3 identified by similarity to GP:2645860; match to protein family HMM PF01527; ISD1, transposase OrfA 2090230 2796733 DVU2011 Desulfovibrio vulgaris str. Hildenborough ISD1, transposase OrfA YP_011227.1 2089964 R 882 CDS YP_011228.1 46580420 2796734 complement(2090399..2090584) 1 NC_002937.3 hypothetical protein 2090584 2796734 DVU2012 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011228.1 2090399 R 882 CDS YP_011229.1 46580421 2796735 complement(2090668..2092329) 1 NC_002937.3 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2092329 2796735 DVU2013 Desulfovibrio vulgaris str. Hildenborough hydroxylamine reductase YP_011229.1 2090668 R 882 CDS YP_011230.1 46580422 2796736 complement(2092404..2093579) 1 NC_002937.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2093579 2796736 DVU2014 Desulfovibrio vulgaris str. Hildenborough metallo-beta-lactamase YP_011230.1 2092404 R 882 CDS YP_011231.1 46580423 2796737 2093666..2093794 1 NC_002937.3 hypothetical protein 2093794 2796737 DVU2015 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011231.1 2093666 D 882 CDS YP_011232.1 46580424 2796738 complement(2093764..2094645) 1 NC_002937.3 identified by match to protein family HMM PF00990; diguanylate cyclase 2094645 2796738 DVU2016 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_011232.1 2093764 R 882 CDS YP_011233.1 46580425 2793353 complement(2094689..2095930) 1 NC_002937.3 identified by similarity to GP:7339832; match to protein family HMM PF01610; ISDvu5, transposase 2095930 2793353 DVU2017 Desulfovibrio vulgaris str. Hildenborough ISDvu5, transposase YP_011233.1 2094689 R 882 CDS YP_011234.1 46580426 2793354 complement(2096176..2098245) 1 NC_002937.3 identified by similarity to OMNI:NTL02MA2298; hypothetical protein 2098245 2793354 DVU2019 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011234.1 2096176 R 882 CDS YP_011235.1 46580427 2793355 complement(2098260..2100758) 1 NC_002937.3 identified by similarity to GP:20095133; hypothetical protein 2100758 2793355 DVU2020 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011235.1 2098260 R 882 CDS YP_011236.1 46580428 2793356 complement(2100755..2101222) 1 NC_002937.3 hypothetical protein 2101222 2793356 DVU2021 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011236.1 2100755 R 882 CDS YP_011237.1 46580429 2793357 complement(2101222..2104698) 1 NC_002937.3 identified by similarity to GP:28629295; hypothetical protein 2104698 2793357 DVU2022 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011237.1 2101222 R 882 CDS YP_011238.1 46580430 2793358 complement(2104703..2105242) 1 NC_002937.3 hypothetical protein 2105242 2793358 DVU2023 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011238.1 2104703 R 882 CDS YP_011239.1 46580431 2793359 complement(2105239..2106303) 1 NC_002937.3 identified by similarity to OMNI:NMB2085; hypothetical protein 2106303 2793359 DVU2024 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011239.1 2105239 R 882 CDS YP_011240.1 46580432 2793360 complement(2106300..2109851) 1 NC_002937.3 identified by similarity to GP:19882263; match to protein family HMM TIGR01612; hypothetical protein 2109851 2793360 DVU2025 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011240.1 2106300 R 882 CDS YP_011241.1 46580433 2793361 complement(2109863..2110453) 1 NC_002937.3 identified by similarity to GP:19916320; hypothetical protein 2110453 2793361 DVU2026 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011241.1 2109863 R 882 CDS YP_011242.1 46580434 2793362 2110636..2110950 1 NC_002937.3 hypothetical protein 2110950 2793362 DVU2027 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011242.1 2110636 D 882 CDS YP_011243.1 46580435 2794826 complement(2111168..2111395) 1 NC_002937.3 identified by similarity to OMNI:NT01MC3723; hypothetical protein 2111395 2794826 DVU2028 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011243.1 2111168 R 882 CDS YP_011244.1 46580436 2794827 2111440..2111838 1 NC_002937.3 identified by match to protein family HMM PF01527; ISDvu2, transposase OrfA 2111838 2794827 DVU2029 Desulfovibrio vulgaris str. Hildenborough ISDvu2, transposase OrfA YP_011244.1 2111440 D 882 CDS YP_011245.1 46580437 2794828 2111835..2112677 1 NC_002937.3 identified by match to protein family HMM PF00665; ISDvu2, transposase OrfB 2112677 2794828 DVU2030 Desulfovibrio vulgaris str. Hildenborough ISDvu2, transposase OrfB YP_011245.1 2111835 D 882 CDS YP_011246.1 46580438 2794829 complement(2112978..2113208) 1 NC_002937.3 hypothetical protein 2113208 2794829 DVU2031 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011246.1 2112978 R 882 CDS YP_011247.1 46580439 2794830 2113963..2114676 1 NC_002937.3 identified by match to protein family HMM PF04404; ERF family protein 2114676 2794830 DVU2032 Desulfovibrio vulgaris str. Hildenborough ERF family protein YP_011247.1 2113963 D 882 CDS YP_011248.1 46580440 2794831 2114748..2116019 1 NC_002937.3 hypothetical protein 2116019 2794831 DVU2033 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011248.1 2114748 D 882 CDS YP_011249.1 46580441 2794832 2116022..2116387 1 NC_002937.3 hypothetical protein 2116387 2794832 DVU2034 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011249.1 2116022 D 882 CDS YP_011250.1 46580442 2794833 complement(2116384..2116671) 1 NC_002937.3 identified by match to protein family HMM PF05016; plasmid stabilization system family protein 2116671 2794833 DVU2035 Desulfovibrio vulgaris str. Hildenborough plasmid stabilization system family protein YP_011250.1 2116384 R 882 CDS YP_011251.1 46580443 2794834 complement(2116661..2116900) 1 NC_002937.3 identified by match to protein family HMM PF01402; CopG family transcriptinal regulator 2116900 2794834 DVU2036 Desulfovibrio vulgaris str. Hildenborough CopG family transcriptinal regulator YP_011251.1 2116661 R 882 CDS YP_011252.1 46580444 2794835 2116979..2117953 1 NC_002937.3 identified by similarity to SP:P29933; cobS protein 2117953 2794835 DVU2037 Desulfovibrio vulgaris str. Hildenborough cobS protein YP_011252.1 2116979 D 882 CDS YP_011253.1 46580445 2794836 2118007..2118303 1 NC_002937.3 hypothetical protein 2118303 2794836 DVU2038 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011253.1 2118007 D 882 CDS YP_011254.1 46580446 2794837 2118372..2118647 1 NC_002937.3 hypothetical protein 2118647 2794837 DVU2039 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011254.1 2118372 D 882 CDS YP_011255.1 46580447 2794838 2118657..2118944 1 NC_002937.3 hypothetical protein 2118944 2794838 DVU2040 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011255.1 2118657 D 882 CDS YP_011256.1 46580448 2794839 2118990..2119985 1 NC_002937.3 identified by similarity to GP:20095150; hypothetical protein 2119985 2794839 DVU2041 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011256.1 2118990 D 882 CDS YP_011257.1 46580449 2794538 2119999..2120793 1 NC_002937.3 identified by match to protein family HMM PF02661; Fic family protein 2120793 2794538 DVU2042 Desulfovibrio vulgaris str. Hildenborough Fic family protein YP_011257.1 2119999 D 882 CDS YP_011258.1 46580450 2794539 2120862..2122463 1 NC_002937.3 identified by similarity to GP:20095140; hypothetical protein 2122463 2794539 DVU2043 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011258.1 2120862 D 882 CDS YP_011259.1 46580451 2794540 2122572..2122697 1 NC_002937.3 hypothetical protein 2122697 2794540 DVU2044 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011259.1 2122572 D 882 CDS YP_011260.1 46580452 2794541 2122690..2122872 1 NC_002937.3 hypothetical protein 2122872 2794541 DVU2045 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011260.1 2122690 D 882 CDS YP_011261.1 46580453 2794542 2123012..2123182 1 NC_002937.3 hypothetical protein 2123182 2794542 DVU2046 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011261.1 2123012 D 882 CDS YP_011262.1 46580454 2794543 2125275..2125439 1 NC_002937.3 hypothetical protein 2125439 2794543 DVU2047 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011262.1 2125275 D 882 CDS YP_011263.1 46580455 2794544 complement(2125651..2125821) 1 NC_002937.3 hypothetical protein 2125821 2794544 DVU2048 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011263.1 2125651 R 882 CDS YP_011264.1 46580456 2794547 complement(2127643..2128941) 1 NC_002937.3 hypothetical protein 2128941 2794547 DVU2051 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011264.1 2127643 R 882 CDS YP_011265.1 46580457 2794549 2129341..2130063 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2130063 2794549 DVU2052 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_011265.1 2129341 D 882 CDS YP_011266.1 46580458 2796477 2130293..2130973 1 NC_002937.3 hypothetical protein 2130973 2796477 DVU2053 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011266.1 2130293 D 882 CDS YP_011267.1 46580459 2796478 complement(2130967..2131065) 1 NC_002937.3 hypothetical protein 2131065 2796478 DVU2054 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011267.1 2130967 R 882 CDS YP_011268.1 46580460 2796479 complement(2131143..2133134) 1 NC_002937.3 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2133134 metG 2796479 metG Desulfovibrio vulgaris str. Hildenborough methionyl-tRNA synthetase YP_011268.1 2131143 R 882 CDS YP_011269.1 46580461 2796480 2133136..2133258 1 NC_002937.3 hypothetical protein 2133258 2796480 DVU2056 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011269.1 2133136 D 882 CDS YP_011270.1 46580462 2796481 complement(2133364..2134827) 1 NC_002937.3 identified by similarity to OMNI:EF2761; match to protein family HMM PF04468; hypothetical protein 2134827 2796481 DVU2057 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011270.1 2133364 R 882 CDS YP_011271.1 46580463 2796482 2134985..2135596 1 NC_002937.3 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 2135596 2796482 DVU2058 Desulfovibrio vulgaris str. Hildenborough HDIG domain-containing protein YP_011271.1 2134985 D 882 CDS YP_011272.1 46580464 2796483 2135611..2136603 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2136603 2796483 DVU2059 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_011272.1 2135611 D 882 CDS YP_011273.1 46580465 2796484 2136610..2136714 1 NC_002937.3 hypothetical protein 2136714 2796484 DVU2060 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011273.1 2136610 D 882 CDS YP_011274.1 46580466 2796485 2136887..2138221 1 NC_002937.3 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 2138221 pfkA 2796485 pfkA Desulfovibrio vulgaris str. Hildenborough diphosphate--fructose-6-phosphate 1-phosphotransferase YP_011274.1 2136887 D 882 CDS YP_011275.1 46580467 2796486 2138236..2141694 1 NC_002937.3 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 2141694 2796486 DVU2062 Desulfovibrio vulgaris str. Hildenborough ATP-dependent DNA helicase UvrD YP_011275.1 2138236 D 882 CDS YP_011276.1 46580468 2796487 2141691..2144645 1 NC_002937.3 identified by similarity to GP:29338363; hypothetical protein 2144645 2796487 DVU2063 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011276.1 2141691 D 882 CDS YP_011277.1 46580469 2796488 2144757..2145878 1 NC_002937.3 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 2145878 2796488 DVU2064 Desulfovibrio vulgaris str. Hildenborough 2-nitropropane dioxygenase YP_011277.1 2144757 D 882 CDS YP_011278.1 46580470 2796489 complement(2145907..2146116) 1 NC_002937.3 hypothetical protein 2146116 2796489 DVU2065 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011278.1 2145907 R 882 CDS YP_011279.1 46580471 2793443 complement(2146192..2147616) 1 NC_002937.3 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase site specific recombinase 2147616 2793443 DVU2066 Desulfovibrio vulgaris str. Hildenborough phage integrase site specific recombinase YP_011279.1 2146192 R 882 CDS YP_011280.1 46580472 2793444 complement(2147609..2148730) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 2148730 2793444 DVU2067 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_011280.1 2147609 R 882 CDS YP_011281.1 46580473 2793445 complement(2148730..2149572) 1 NC_002937.3 identified by similarity to OMNI:TM0854; match to protein family HMM PF01966; HD domain-containing protein 2149572 2793445 DVU2068 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_011281.1 2148730 R 882 CDS YP_003858616.1 304569752 9714849 complement(2149626..2149958) 1 NC_002937.3 hypothetical protein 2149958 9714849 DVU4011 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858616.1 2149626 R 882 CDS YP_011282.1 46580474 2793446 complement(2149978..2151969) 1 NC_002937.3 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein DprA 2151969 2793446 DVU2069 Desulfovibrio vulgaris str. Hildenborough DNA processing protein DprA YP_011282.1 2149978 R 882 CDS YP_011283.1 46580475 2793447 complement(2151978..2152751) 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 2152751 2793447 DVU2070 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011283.1 2151978 R 882 CDS YP_011284.1 46580476 2793448 2153102..2154058 1 NC_002937.3 hypothetical protein 2154058 2793448 DVU2071 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011284.1 2153102 D 882 CDS YP_011285.1 46580477 2793449 complement(2154133..2157402) 1 NC_002937.3 identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 2157402 cheA-3 2793449 cheA-3 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheA YP_011285.1 2154133 R 882 CDS YP_011286.1 46580478 2793450 complement(2157498..2157866) 1 NC_002937.3 identified by similarity to GP:510670; match to protein family HMM PF00072; chemotaxis protein CheY 2157866 cheY-2 2793450 cheY-2 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheY YP_011286.1 2157498 R 882 CDS YP_011287.2 304569714 2793451 complement(2157876..2158526) 1 NC_002937.3 identified by similarity to SP:P39802; match to protein family HMM PF01584; chemotaxis protein CheW 2158526 2793451 DVU2074 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheW YP_011287.2 2157876 R 882 CDS YP_011288.1 46580480 2793452 complement(2158520..2159296) 1 NC_002937.3 identified by match to protein family HMM PF00991; ParA family protein 2159296 2793452 DVU2075 Desulfovibrio vulgaris str. Hildenborough ParA family protein YP_011288.1 2158520 R 882 CDS YP_011289.1 46580481 2793453 complement(2159347..2160225) 1 NC_002937.3 identified by similarity to SP:P07801; chemotaxis protein methyltransferase 2160225 cheR-2 2793453 cheR-2 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein methyltransferase YP_011289.1 2159347 R 882 CDS YP_011290.1 46580482 2793454 complement(2160222..2162150) 1 NC_002937.3 identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130; hypothetical protein 2162150 2793454 DVU2077 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011290.1 2160222 R 882 CDS YP_011291.1 46580483 2793455 complement(2162209..2163312) 1 NC_002937.3 identified by similarity to SP:Q05522; match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB 2163312 cheB-2 2793455 cheB-2 Desulfovibrio vulgaris str. Hildenborough protein-glutamate methylesterase CheB YP_011291.1 2162209 R 882 CDS YP_011292.1 46580484 2793533 complement(2163649..2166261) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2166261 2793533 DVU2079 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_011292.1 2163649 R 882 CDS YP_003858617.1 304569759 9714848 2166576..2166914 1 NC_002937.3 hypothetical protein 2166914 9714848 DVU4018 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858617.1 2166576 D 882 CDS YP_011294.1 46580486 2793535 complement(2167122..2167430) 1 NC_002937.3 hypothetical protein 2167430 2793535 DVU2081 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011294.1 2167122 R 882 CDS YP_011295.1 46580487 2793536 2167481..2168374 1 NC_002937.3 identified by similarity to SP:P02968; match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 2168374 2793536 DVU2082 Desulfovibrio vulgaris str. Hildenborough flagellin YP_011295.1 2167481 D 882 CDS YP_011296.1 46580488 2793537 complement(2168573..2170726) 1 NC_002937.3 identified by similarity to SP:O54408; GTP pyrophosphokinase 2170726 relA 2793537 relA Desulfovibrio vulgaris str. Hildenborough GTP pyrophosphokinase YP_011296.1 2168573 R 882 CDS YP_011297.1 46580489 2793538 complement(2170730..2172427) 1 NC_002937.3 identified by similarity to SP:P42061; match to protein family HMM PF00496; oligopeptide-binding protein 2172427 2793538 DVU2084 Desulfovibrio vulgaris str. Hildenborough oligopeptide-binding protein YP_011297.1 2170730 R 882 CDS YP_011298.2 304569715 2793539 2172660..2175875 1 NC_002937.3 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; Snf2 family protein 2175875 2793539 DVU2085 Desulfovibrio vulgaris str. Hildenborough Snf2 family protein YP_011298.2 2172660 D 882 CDS YP_011299.1 46580491 2793540 complement(2176130..2177572) 1 NC_002937.3 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2177572 2793540 DVU2086 Desulfovibrio vulgaris str. Hildenborough GntR family transcriptional regulator YP_011299.1 2176130 R 882 CDS YP_011300.1 46580492 2793541 2177571..2178380 1 NC_002937.3 hypothetical protein 2178380 2793541 DVU2087 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011300.1 2177571 D 882 CDS YP_011301.1 46580493 2793542 2178377..2179297 1 NC_002937.3 identified by similarity to OMNI:NTL01BH0391; match to protein family HMM PF00892; hypothetical protein 2179297 2793542 DVU2088 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011301.1 2178377 D 882 CDS YP_011302.1 46580494 2793543 2179302..2179463 1 NC_002937.3 hypothetical protein 2179463 2793543 DVU2089 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011302.1 2179302 D 882 CDS YP_011303.1 46580495 2793544 2179568..2180404 1 NC_002937.3 identified by match to protein family HMM PF00036; EF hand domain-containing protein 2180404 2793544 DVU2090 Desulfovibrio vulgaris str. Hildenborough EF hand domain-containing protein YP_011303.1 2179568 D 882 CDS YP_011304.1 46580496 2793545 complement(2180539..2181219) 1 NC_002937.3 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 2181219 thiE-1 2793545 thiE-1 Desulfovibrio vulgaris str. Hildenborough thiamine-phosphate pyrophosphorylase YP_011304.1 2180539 R 882 CDS YP_011305.1 46580497 2795468 complement(2181488..2182129) 1 NC_002937.3 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 2182129 2795468 DVU2092 Desulfovibrio vulgaris str. Hildenborough thiamine biosynthesis protein ThiF YP_011305.1 2181488 R 882 CDS YP_011306.1 46580498 2795469 complement(2182114..2183448) 1 NC_002937.3 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2183448 thiH 2795469 thiH Desulfovibrio vulgaris str. Hildenborough thiamine biosynthesis protein ThiH YP_011306.1 2182114 R 882 CDS YP_011307.1 46580499 2795470 complement(2183451..2184248) 1 NC_002937.3 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2184248 thiG 2795470 thiG Desulfovibrio vulgaris str. Hildenborough thiazole synthase YP_011307.1 2183451 R 882 CDS YP_011308.1 46580500 2795471 complement(2184248..2184448) 1 NC_002937.3 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 2184448 thiS 2795471 thiS Desulfovibrio vulgaris str. Hildenborough thiamine biosynthesis protein ThiS YP_011308.1 2184248 R 882 CDS YP_011309.1 46580501 2795472 complement(2184974..2185066) 1 NC_002937.3 hypothetical protein 2185066 2795472 DVU2096 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011309.1 2184974 R 882 CDS YP_011310.1 46580502 2795473 2185336..2186007 1 NC_002937.3 identified by similarity to SP:P03019; match to protein family HMM PF00027; transcriptional regulator 2186007 2795473 DVU2097 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_011310.1 2185336 D 882 CDS YP_011311.1 46580503 2795474 2186296..2188185 1 NC_002937.3 identified by similarity to SP:P31896; carbon monoxide dehydrogenase 2188185 cooS 2795474 cooS Desulfovibrio vulgaris str. Hildenborough carbon monoxide dehydrogenase YP_011311.1 2186296 D 882 CDS YP_011312.1 46580504 2795475 2188270..2189151 1 NC_002937.3 identified by similarity to SP:P31897; match to protein family HMM PF00991; carbon monoxide dehydrogenase accessory protein CooC 2189151 2795475 DVU2099 Desulfovibrio vulgaris str. Hildenborough carbon monoxide dehydrogenase accessory protein CooC YP_011312.1 2188270 D 882 CDS YP_011313.1 46580505 2795476 complement(2189292..2189708) 1 NC_002937.3 identified by match to protein family HMM PF00582; universal stress protein 2189708 2795476 DVU2100 Desulfovibrio vulgaris str. Hildenborough universal stress protein YP_011313.1 2189292 R 882 CDS YP_011314.1 46580506 2795477 complement(2189934..2195285) 1 NC_002937.3 identified by similarity to OMNI:CC1604; match to protein family HMM PF04357; hypothetical protein 2195285 2795477 DVU2101 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011314.1 2189934 R 882 CDS YP_011315.1 46580507 2795478 complement(2195285..2197615) 1 NC_002937.3 identified by match to protein family HMM PF01103; OMP85 family outer membrane protein 2197615 2795478 DVU2102 Desulfovibrio vulgaris str. Hildenborough OMP85 family outer membrane protein YP_011315.1 2195285 R 882 CDS YP_011316.1 46580508 2795479 complement(2197890..2198753) 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF00991; iron-sulfur cluster-binding/ATPase 2198753 2795479 DVU2103 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding/ATPase YP_011316.1 2197890 R 882 CDS YP_011317.1 46580509 2795480 complement(2198750..2199655) 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF00991; iron-sulfur cluster-binding/ATPase 2199655 2795480 DVU2104 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding/ATPase YP_011317.1 2198750 R 882 CDS YP_011318.1 46580510 2793377 complement(2199676..2200188) 1 NC_002937.3 hypothetical protein 2200188 2793377 DVU2105 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011318.1 2199676 R 882 CDS YP_011319.1 46580511 2793378 2200357..2201733 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2201733 2793378 DVU2106 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_011319.1 2200357 D 882 CDS YP_011320.1 46580512 2793379 2201950..2202501 1 NC_002937.3 hypothetical protein 2202501 2793379 DVU2107 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011320.1 2201950 D 882 CDS YP_011321.1 46580513 2793380 2202492..2202851 1 NC_002937.3 identified by match to protein family HMM PF02579; hypothetical protein 2202851 2793380 DVU2108 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011321.1 2202492 D 882 CDS YP_011322.1 46580514 2793381 2202848..2204311 1 NC_002937.3 identified by match to protein family HMM PF02579; hypothetical protein 2204311 2793381 DVU2109 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011322.1 2202848 D 882 CDS YP_011323.1 46580515 2793382 complement(2204660..2206297) 1 NC_002937.3 identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 2206297 2793382 DVU2110 Desulfovibrio vulgaris str. Hildenborough L-lactate permease YP_011323.1 2204660 R 882 CDS YP_011324.1 46580516 2793383 2206454..2207356 1 NC_002937.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2207356 2793383 DVU2111 Desulfovibrio vulgaris str. Hildenborough LysR family transcriptional regulator YP_011324.1 2206454 D 882 CDS YP_011325.1 46580517 2793384 2207353..2207772 1 NC_002937.3 hypothetical protein 2207772 2793384 DVU2112 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011325.1 2207353 D 882 CDS YP_011326.1 46580518 2793385 complement(2208084..2209415) 1 NC_002937.3 identified by similarity to SP:P31466; match to protein family HMM PF00860; xanthine/uracil permease 2209415 2793385 DVU2113 Desulfovibrio vulgaris str. Hildenborough xanthine/uracil permease YP_011326.1 2208084 R 882 CDS YP_011327.1 46580519 2793386 2210047..2211435 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 2211435 2793386 DVU2114 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_011327.1 2210047 D 882 CDS YP_011328.1 46580520 2793387 complement(2211635..2211826) 1 NC_002937.3 hypothetical protein 2211826 2793387 DVU2115 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011328.1 2211635 R 882 CDS YP_011329.1 46580521 2793388 2212101..2212274 1 NC_002937.3 identified by similarity to OMNI:NTL01RSA1092; match to protein family HMM PF04964; pilin 2212274 2793388 DVU2116 Desulfovibrio vulgaris str. Hildenborough pilin YP_011329.1 2212101 D 882 CDS YP_011330.1 46580522 2793389 2212495..2213061 1 NC_002937.3 hypothetical protein 2213061 2793389 DVU2117 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011330.1 2212495 D 882 CDS YP_011331.1 46580523 2793390 2213071..2213889 1 NC_002937.3 identified by similarity to OMNI:CT0429; hypothetical protein 2213889 2793390 DVU2118 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011331.1 2213071 D 882 CDS YP_011332.1 46580524 2795500 2213886..2215340 1 NC_002937.3 identified by match to protein family HMM PF00263; type II/III secretion system protein 2215340 2795500 DVU2119 Desulfovibrio vulgaris str. Hildenborough type II/III secretion system protein YP_011332.1 2213886 D 882 CDS YP_011333.1 46580525 2795501 2215350..2215754 1 NC_002937.3 hypothetical protein 2215754 2795501 DVU2120 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011333.1 2215350 D 882 CDS YP_011334.1 46580526 2795502 2215766..2216980 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 2216980 2795502 DVU2121 Desulfovibrio vulgaris str. Hildenborough response regulator YP_011334.1 2215766 D 882 CDS YP_011335.1 46580527 2795503 2217377..2218810 1 NC_002937.3 identified by similarity to GP:10334985; match to protein family HMM PF00437; type II/IV secretion system protein 2218810 2795503 DVU2122 Desulfovibrio vulgaris str. Hildenborough type II/IV secretion system protein YP_011335.1 2217377 D 882 CDS YP_011336.1 46580528 2795504 2218890..2219855 1 NC_002937.3 identified by similarity to OMNI:NTL01RS0651; hypothetical protein 2219855 2795504 DVU2123 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011336.1 2218890 D 882 CDS YP_011337.1 46580529 2795505 2219984..2220838 1 NC_002937.3 identified by similarity to OMNI:NTL01SM00146; hypothetical protein 2220838 2795505 DVU2124 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011337.1 2219984 D 882 CDS YP_011338.1 46580530 2795506 2220892..2222007 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 2222007 2795506 DVU2125 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011338.1 2220892 D 882 CDS YP_011339.1 46580531 2795507 2222196..2222585 1 NC_002937.3 hypothetical protein 2222585 2795507 DVU2126 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011339.1 2222196 D 882 CDS YP_011340.1 46580532 2795508 2222596..2223858 1 NC_002937.3 identified by match to protein family HMM PF00092; von Willebrand factor A 2223858 2795508 DVU2127 Desulfovibrio vulgaris str. Hildenborough von Willebrand factor A YP_011340.1 2222596 D 882 CDS YP_011341.1 46580533 2795509 2223874..2224368 1 NC_002937.3 hypothetical protein 2224368 2795509 DVU2128 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011341.1 2223874 D 882 CDS YP_011342.1 46580534 2795510 2224406..2226877 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 2226877 2795510 DVU2129 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_011342.1 2224406 D 882 CDS YP_011343.1 46580535 2795511 complement(2226864..2227526) 1 NC_002937.3 hypothetical protein 2227526 2795511 DVU2130 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011343.1 2226864 R 882 CDS YP_011344.1 46580536 2795512 2227823..2228302 1 NC_002937.3 hypothetical protein 2228302 2795512 DVU2131 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011344.1 2227823 D 882 CDS YP_011345.1 46580537 2795513 complement(2228569..2228826) 1 NC_002937.3 hypothetical protein 2228826 2795513 DVU2132 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011345.1 2228569 R 882 CDS YP_011346.1 46580538 2794212 complement(2228881..2230620) 1 NC_002937.3 hypothetical protein 2230620 2794212 DVU2133 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011346.1 2228881 R 882 CDS YP_011347.1 46580539 2794213 2230755..2230883 1 NC_002937.3 hypothetical protein 2230883 2794213 DVU2134 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011347.1 2230755 D 882 CDS YP_011348.1 46580540 2794214 2231340..2231891 1 NC_002937.3 hypothetical protein 2231891 2794214 DVU2135 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011348.1 2231340 D 882 CDS YP_011349.1 46580541 2794215 2231969..2233150 1 NC_002937.3 hypothetical protein 2233150 2794215 DVU2136 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011349.1 2231969 D 882 CDS YP_011350.1 46580542 2794216 complement(2233371..2235500) 1 NC_002937.3 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthase subunit beta 2235500 sucCD 2794216 sucCD Desulfovibrio vulgaris str. Hildenborough succinyl-CoA synthase subunit beta YP_011350.1 2233371 R 882 CDS YP_011351.1 46580543 2794217 complement(2235537..2236190) 1 NC_002937.3 identified by similarity to OMNI:NTL03CP2602; hypothetical protein 2236190 2794217 DVU2138 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011351.1 2235537 R 882 CDS YP_011352.1 46580544 2794218 complement(2236243..2237562) 1 NC_002937.3 identified by match to protein family HMM PF00850; histone deacetylase 2237562 2794218 DVU2139 Desulfovibrio vulgaris str. Hildenborough histone deacetylase YP_011352.1 2236243 R 882 CDS YP_011353.1 46580545 2794219 complement(2237716..2238390) 1 NC_002937.3 identified by similarity to SP:P37537; match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 2238390 tmk 2794219 tmk Desulfovibrio vulgaris str. Hildenborough thymidylate kinase YP_011353.1 2237716 R 882 CDS YP_011354.1 46580546 2794220 complement(2238366..2239403) 1 NC_002937.3 identified by match to protein family HMM PF01336; match to protein family HMM PF01966; match to protein family HMM TIGR00277; nucleic acid-binding protein 2239403 2794220 DVU2141 Desulfovibrio vulgaris str. Hildenborough nucleic acid-binding protein YP_011354.1 2238366 R 882 CDS YP_011355.1 46580547 2794221 2239541..2240293 1 NC_002937.3 identified by similarity to SP:P36664; match to protein family HMM PF01975; match to protein family HMM TIGR00087; acid phosphatase SurE 2240293 surE 2794221 surE Desulfovibrio vulgaris str. Hildenborough acid phosphatase SurE YP_011355.1 2239541 D 882 CDS YP_011356.1 46580548 2794222 2240742..2241665 1 NC_002937.3 identified by similarity to SP:P13243; match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase 2241665 fba 2794222 fba Desulfovibrio vulgaris str. Hildenborough fructose-1,6-bisphosphate aldolase YP_011356.1 2240742 D 882 CDS YP_011357.1 46580549 2794223 2241689..2242690 1 NC_002937.3 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 2242690 gap-2 2794223 gap-2 Desulfovibrio vulgaris str. Hildenborough glyceraldehyde 3-phosphate dehydrogenase YP_011357.1 2241689 D 882 CDS YP_011358.1 46580550 2794224 complement(2243015..2243665) 1 NC_002937.3 identified by similarity to SP:P22616; chloramphenicol acetyltransferase 2243665 2794224 DVU2145 Desulfovibrio vulgaris str. Hildenborough chloramphenicol acetyltransferase YP_011358.1 2243015 R 882 CDS YP_011359.1 46580551 2794225 2243814..2243969 1 NC_002937.3 hypothetical protein 2243969 2794225 DVU2146 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011359.1 2243814 D 882 CDS YP_011360.1 46580552 2793406 complement(2244026..2245534) 1 NC_002937.3 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; L-serine dehydratase 2245534 2793406 DVU2147 Desulfovibrio vulgaris str. Hildenborough L-serine dehydratase YP_011360.1 2244026 R 882 CDS YP_011361.1 46580553 2793407 2246009..2247403 1 NC_002937.3 identified by similarity to SP:P39319; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 2247403 2793407 DVU2148 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011361.1 2246009 D 882 CDS YP_011362.1 46580554 2793408 complement(2247518..2249257) 1 NC_002937.3 identified by similarity to GP:21666416; match to protein family HMM PF05670; hypothetical protein 2249257 2793408 DVU2149 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011362.1 2247518 R 882 CDS YP_011363.1 46580555 2793409 complement(2249277..2249639) 1 NC_002937.3 identified by similarity to SP:P18274; match to protein family HMM PF01258; dnaK suppressor protein 2249639 2793409 DVU2150 Desulfovibrio vulgaris str. Hildenborough dnaK suppressor protein YP_011363.1 2249277 R 882 CDS YP_011364.1 46580556 2793414 complement(2250828..2251187) 1 NC_002937.3 identified by similarity to SP:P54342; hypothetical protein 2251187 2793414 DVU2151 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011364.1 2250828 R 882 CDS YP_011365.1 46580557 2796563 complement(2251197..2252213) 1 NC_002937.3 hypothetical protein 2252213 2796563 DVU2152 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011365.1 2251197 R 882 CDS YP_011366.1 46580558 2796564 complement(2252215..2256255) 1 NC_002937.3 tail fiber protein 2256255 2796564 DVU2153 Desulfovibrio vulgaris str. Hildenborough tail fiber protein YP_011366.1 2252215 R 882 CDS YP_011367.1 46580559 2796565 complement(2256245..2256670) 1 NC_002937.3 identified by match to protein family HMM PF00877; tail assembly protein 2256670 2796565 DVU2154 Desulfovibrio vulgaris str. Hildenborough tail assembly protein YP_011367.1 2256245 R 882 CDS YP_011368.1 46580560 2796566 complement(2256670..2257095) 1 NC_002937.3 hypothetical protein 2257095 2796566 DVU2155 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011368.1 2256670 R 882 CDS YP_011369.1 46580561 2796567 complement(2257176..2257541) 1 NC_002937.3 hypothetical protein 2257541 2796567 DVU2156 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011369.1 2257176 R 882 CDS YP_011370.1 46580562 2796568 complement(2257541..2260462) 1 NC_002937.3 tail tape meausure protein 2260462 2796568 DVU2157 Desulfovibrio vulgaris str. Hildenborough tail tape meausure protein YP_011370.1 2257541 R 882 CDS YP_011371.1 46580563 2796569 complement(2260761..2261111) 1 NC_002937.3 hypothetical protein 2261111 2796569 DVU2158 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011371.1 2260761 R 882 CDS YP_011372.1 46580564 2796570 complement(2261120..2262064) 1 NC_002937.3 hypothetical protein 2262064 2796570 DVU2159 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011372.1 2261120 R 882 CDS YP_011373.1 46580565 2796571 complement(2262082..2262549) 1 NC_002937.3 hypothetical protein 2262549 2796571 DVU2160 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011373.1 2262082 R 882 CDS YP_011374.1 46580566 2796572 complement(2262546..2263256) 1 NC_002937.3 hypothetical protein 2263256 2796572 DVU2161 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011374.1 2262546 R 882 CDS YP_011375.1 46580567 2796573 complement(2263256..2263585) 1 NC_002937.3 hypothetical protein 2263585 2796573 DVU2162 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011375.1 2263256 R 882 CDS YP_011376.1 46580568 2796574 complement(2263606..2263770) 1 NC_002937.3 hypothetical protein 2263770 2796574 DVU2163 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011376.1 2263606 R 882 CDS YP_011377.1 46580569 2796575 complement(2263763..2264173) 1 NC_002937.3 lipoprotein 2264173 2796575 DVU2164 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011377.1 2263763 R 882 CDS YP_011378.1 46580570 2796576 complement(2264316..2264816) 1 NC_002937.3 identified by match to protein family HMM PF01464; lysozyme 2264816 2796576 DVU2165 Desulfovibrio vulgaris str. Hildenborough lysozyme YP_011378.1 2264316 R 882 CDS YP_011379.1 46580571 2793391 complement(2264839..2265237) 1 NC_002937.3 identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593; holin 2265237 2793391 DVU2166 Desulfovibrio vulgaris str. Hildenborough holin YP_011379.1 2264839 R 882 CDS YP_011380.1 46580572 2793392 complement(2265367..2265576) 1 NC_002937.3 hypothetical protein 2265576 2793392 DVU2167 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011380.1 2265367 R 882 CDS YP_011381.1 46580573 2793393 complement(2265579..2266604) 1 NC_002937.3 identified by match to protein family HMM PF03864; major head protein 2266604 2793393 DVU2168 Desulfovibrio vulgaris str. Hildenborough major head protein YP_011381.1 2265579 R 882 CDS YP_011382.1 46580574 2793394 complement(2266615..2266983) 1 NC_002937.3 identified by similarity to GP:311850; hypothetical protein 2266983 2793394 DVU2169 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011382.1 2266615 R 882 CDS YP_011383.1 46580575 2793395 complement(2266987..2268207) 1 NC_002937.3 identified by match to protein family HMM PF01343; minor capsid protein C 2268207 2793395 DVU2170 Desulfovibrio vulgaris str. Hildenborough minor capsid protein C YP_011383.1 2266987 R 882 CDS YP_011384.1 46580576 2793396 complement(2268224..2269777) 1 NC_002937.3 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; portal protein 2269777 2793396 DVU2171 Desulfovibrio vulgaris str. Hildenborough portal protein YP_011384.1 2268224 R 882 CDS YP_011385.1 46580577 2793397 complement(2269777..2269998) 1 NC_002937.3 hypothetical protein 2269998 2793397 DVU2172 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011385.1 2269777 R 882 CDS YP_011386.1 46580578 2793398 2269991..2270116 1 NC_002937.3 hypothetical protein 2270116 2793398 DVU2173 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011386.1 2269991 D 882 CDS YP_011387.1 46580579 2793399 complement(2270230..2270907) 1 NC_002937.3 hypothetical protein 2270907 2793399 DVU2174 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011387.1 2270230 R 882 CDS YP_011388.1 46580580 2793400 complement(2270961..2275748) 1 NC_002937.3 identified by match to protein family HMM PF00271; match to protein family HMM TIGR01612; adenine specific DNA methyltransferase 2275748 2793400 DVU2175 Desulfovibrio vulgaris str. Hildenborough adenine specific DNA methyltransferase YP_011388.1 2270961 R 882 CDS YP_011389.1 46580581 2793401 2275825..2276004 1 NC_002937.3 hypothetical protein 2276004 2793401 DVU2176 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011389.1 2275825 D 882 CDS YP_011390.1 46580582 2793402 complement(2276354..2277667) 1 NC_002937.3 hypothetical protein 2277667 2793402 DVU2177 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011390.1 2276354 R 882 CDS YP_011391.1 46580583 2793403 complement(2277993..2278835) 1 NC_002937.3 identified by match to protein family HMM PF00665; ISDvu2, transposase OrfB 2278835 2793403 DVU2178 Desulfovibrio vulgaris str. Hildenborough ISDvu2, transposase OrfB YP_011391.1 2277993 R 882 CDS YP_011392.1 46580584 2793404 complement(2278832..2279230) 1 NC_002937.3 identified by match to protein family HMM PF01527; ISDvu2, transposase OrfA 2279230 2793404 DVU2179 Desulfovibrio vulgaris str. Hildenborough ISDvu2, transposase OrfA YP_011392.1 2278832 R 882 CDS YP_011393.1 46580585 2793405 2279386..2279526 1 NC_002937.3 hypothetical protein 2279526 2793405 DVU2180 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011393.1 2279386 D 882 CDS YP_011394.1 46580586 2795749 2279617..2280495 1 NC_002937.3 antirepressor 2280495 2795749 DVU2181 Desulfovibrio vulgaris str. Hildenborough antirepressor YP_011394.1 2279617 D 882 CDS YP_011395.1 46580587 2795750 2280733..2280864 1 NC_002937.3 hypothetical protein 2280864 2795750 DVU2182 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011395.1 2280733 D 882 CDS YP_011396.1 46580588 2795751 2280885..2281616 1 NC_002937.3 hypothetical protein 2281616 2795751 DVU2183 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011396.1 2280885 D 882 CDS YP_011397.1 46580589 2795752 complement(2281651..2281869) 1 NC_002937.3 identified by match to protein family HMM TIGR01764; DNA-binding protein 2281869 2795752 DVU2184 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_011397.1 2281651 R 882 CDS YP_011398.1 46580590 2795753 complement(2281873..2283798) 1 NC_002937.3 terminase large subunit 2283798 2795753 DVU2185 Desulfovibrio vulgaris str. Hildenborough terminase large subunit YP_011398.1 2281873 R 882 CDS YP_011399.1 46580591 2795754 complement(2283842..2284855) 1 NC_002937.3 hypothetical protein 2284855 2795754 DVU2186 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011399.1 2283842 R 882 CDS YP_011400.1 46580592 2795755 complement(2285284..2285814) 1 NC_002937.3 hypothetical protein 2285814 2795755 DVU2187 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011400.1 2285284 R 882 CDS YP_011401.1 46580593 2795756 complement(2286231..2288723) 1 NC_002937.3 identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613; primase 2288723 2795756 DVU2188 Desulfovibrio vulgaris str. Hildenborough primase YP_011401.1 2286231 R 882 CDS YP_011402.1 46580594 2795757 complement(2288804..2289244) 1 NC_002937.3 transcriptional regulator cII 2289244 2795757 DVU2189 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator cII YP_011402.1 2288804 R 882 CDS YP_011403.1 46580595 2795758 complement(2289318..2289512) 1 NC_002937.3 transcriptional regulator 2289512 2795758 DVU2190 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_011403.1 2289318 R 882 CDS YP_003858618.1 304569755 9714847 2289599..2289883 1 NC_002937.3 hypothetical protein 2289883 9714847 DVU4014 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858618.1 2289599 D 882 CDS YP_011404.1 46580596 2795759 2290097..2290453 1 NC_002937.3 hypothetical protein 2290453 2795759 DVU2191 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011404.1 2290097 D 882 CDS YP_011405.1 46580597 2795760 2290446..2290601 1 NC_002937.3 hypothetical protein 2290601 2795760 DVU2192 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011405.1 2290446 D 882 CDS YP_011406.1 46580598 2795761 2290628..2291182 1 NC_002937.3 hypothetical protein 2291182 2795761 DVU2193 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011406.1 2290628 D 882 CDS YP_011407.1 46580599 2795762 2291229..2291918 1 NC_002937.3 hypothetical protein 2291918 2795762 DVU2194 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011407.1 2291229 D 882 CDS YP_011408.1 46580600 2795763 2291911..2292168 1 NC_002937.3 hypothetical protein 2292168 2795763 DVU2195 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011408.1 2291911 D 882 CDS YP_011409.1 46580601 2793659 2292218..2292763 1 NC_002937.3 hypothetical protein 2292763 2793659 DVU2196 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011409.1 2292218 D 882 CDS YP_011410.1 46580602 2793660 complement(2292764..2293693) 1 NC_002937.3 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 2293693 2793660 DVU2197 Desulfovibrio vulgaris str. Hildenborough phage integrase site specific recombinase YP_011410.1 2292764 R 882 CDS YP_011411.1 46580603 2793661 complement(2294218..2294415) 1 NC_002937.3 hypothetical protein 2294415 2793661 DVU2198 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011411.1 2294218 R 882 CDS YP_011412.1 46580604 2793662 complement(2294467..2294691) 1 NC_002937.3 hypothetical protein 2294691 2793662 DVU2199 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011412.1 2294467 R 882 CDS YP_011413.1 46580605 2793663 2294814..2295194 1 NC_002937.3 hypothetical protein 2295194 2793663 DVU2200 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011413.1 2294814 D 882 CDS YP_011414.1 46580606 2793664 2296002..2297159 1 NC_002937.3 identified by similarity to SP:Q24857; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 2297159 2793664 DVU2201 Desulfovibrio vulgaris str. Hildenborough iron-containing alcohol dehydrogenase YP_011414.1 2296002 D 882 CDS YP_011415.1 46580607 2793665 complement(2297470..2298987) 1 NC_002937.3 identified by match to protein family HMM PF00497; match to protein family HMM PF01464; transglycosylase 2298987 2793665 DVU2202 Desulfovibrio vulgaris str. Hildenborough transglycosylase YP_011415.1 2297470 R 882 CDS YP_011416.1 46580608 2793666 2299312..2299686 1 NC_002937.3 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; L-PSP family endoribonuclease 2299686 2793666 DVU2203 Desulfovibrio vulgaris str. Hildenborough L-PSP family endoribonuclease YP_011416.1 2299312 D 882 CDS YP_011417.1 46580609 2793667 2299796..2301184 1 NC_002937.3 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 2301184 tnaA 2793667 tnaA Desulfovibrio vulgaris str. Hildenborough tryptophanase YP_011417.1 2299796 D 882 CDS YP_011418.1 46580610 2793668 2301355..2302632 1 NC_002937.3 identified by similarity to SP:P22306; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tryptophan-specific transport protein 2302632 2793668 DVU2205 Desulfovibrio vulgaris str. Hildenborough tryptophan-specific transport protein YP_011418.1 2301355 D 882 CDS YP_011419.1 46580611 2793669 complement(2302938..2303609) 1 NC_002937.3 hypothetical protein 2303609 2793669 DVU2206 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011419.1 2302938 R 882 CDS YP_011420.1 46580612 2793670 complement(2303661..2303834) 1 NC_002937.3 hypothetical protein 2303834 2793670 DVU2207 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011420.1 2303661 R 882 CDS YP_011421.1 46580613 2793671 complement(2303762..2303875) 1 NC_002937.3 hypothetical protein 2303875 2793671 DVU2208 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011421.1 2303762 R 882 CDS YP_011422.1 46580614 2795356 2304321..2305043 1 NC_002937.3 identified by similarity to GP:18252514; hypothetical protein 2305043 2795356 DVU2209 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011422.1 2304321 D 882 CDS YP_011423.1 46580615 2795357 2305040..2306767 1 NC_002937.3 identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein 2306767 2795357 DVU2210 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011423.1 2305040 D 882 CDS YP_011424.1 46580616 2795358 complement(2306914..2309532) 1 NC_002937.3 hypothetical protein 2309532 2795358 DVU2211 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011424.1 2306914 R 882 CDS YP_011425.1 46580617 2795359 2309563..2309925 1 NC_002937.3 identified by similarity to OMNI:NTL01MT00146; hypothetical protein 2309925 2795359 DVU2212 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011425.1 2309563 D 882 CDS YP_011426.1 46580618 2795360 2310270..2310971 1 NC_002937.3 identified by match to protein family HMM PF00565; nuclease domain-containing protein 2310971 2795360 DVU2213 Desulfovibrio vulgaris str. Hildenborough nuclease domain-containing protein YP_011426.1 2310270 D 882 CDS YP_011427.1 46580619 2795361 2311050..2311223 1 NC_002937.3 hypothetical protein 2311223 2795361 DVU2214 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011427.1 2311050 D 882 CDS YP_011428.1 46580620 2795362 2311376..2311645 1 NC_002937.3 identified by match to protein family HMM PF00076; RNA-binding protein 2311645 2795362 DVU2215 Desulfovibrio vulgaris str. Hildenborough RNA-binding protein YP_011428.1 2311376 D 882 CDS YP_011429.1 46580621 2795363 2311725..2311988 1 NC_002937.3 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2311988 infA 2795363 infA Desulfovibrio vulgaris str. Hildenborough translation initiation factor IF-1 YP_011429.1 2311725 D 882 CDS YP_011430.1 46580622 2795364 complement(2312523..2313029) 1 NC_002937.3 identified by similarity to SP:P45473; match to protein family HMM PF00583; acetyltransferase 2313029 2795364 DVU2217 Desulfovibrio vulgaris str. Hildenborough acetyltransferase YP_011430.1 2312523 R 882 CDS YP_011431.1 46580623 2795365 complement(2313101..2314147) 1 NC_002937.3 identified by match to protein family HMM PF03193; GTP-binding protein 2314147 2795365 DVU2218 Desulfovibrio vulgaris str. Hildenborough GTP-binding protein YP_011431.1 2313101 R 882 CDS YP_011432.1 46580624 2795366 complement(2314352..2314531) 1 NC_002937.3 hypothetical protein 2314531 2795366 DVU2219 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011432.1 2314352 R 882 CDS YP_011433.1 46580625 2795367 2314522..2314791 1 NC_002937.3 identified by similarity to OMNI:NTL03CP0738; hypothetical protein 2314791 2795367 DVU2220 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011433.1 2314522 D 882 CDS YP_011434.1 46580626 2795368 2314837..2314977 1 NC_002937.3 hypothetical protein 2314977 2795368 DVU2221 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011434.1 2314837 D 882 CDS YP_011435.1 46580627 2795369 complement(2314982..2315512) 1 NC_002937.3 identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 2315512 ssb 2795369 ssb Desulfovibrio vulgaris str. Hildenborough single-strand binding protein YP_011435.1 2314982 R 882 CDS YP_011436.1 46580628 2795550 complement(2315552..2315896) 1 NC_002937.3 hypothetical protein 2315896 2795550 DVU2223 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011436.1 2315552 R 882 CDS YP_011437.1 46580629 2795551 complement(2315899..2316549) 1 NC_002937.3 hypothetical protein 2316549 2795551 DVU2224 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011437.1 2315899 R 882 CDS YP_011438.1 46580630 2795552 complement(2316568..2318823) 1 NC_002937.3 acetyl-CoA carboxylase carboxyltransferase subunits alpha and beta 2318823 2795552 DVU2225 Desulfovibrio vulgaris str. Hildenborough acetyl-CoA carboxylase carboxyltransferase subunits alpha and beta YP_011438.1 2316568 R 882 CDS YP_011439.1 46580631 2795553 complement(2318897..2320312) 1 NC_002937.3 identified by match to protein family HMM PF00289; match to protein family HMM PF02786; acetyl-CoA carboxylase, biotin carboxylase 2320312 2795553 DVU2226 Desulfovibrio vulgaris str. Hildenborough acetyl-CoA carboxylase, biotin carboxylase YP_011439.1 2318897 R 882 CDS YP_011440.1 46580632 2795554 complement(2320293..2320736) 1 NC_002937.3 hypothetical protein 2320736 2795554 DVU2227 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011440.1 2320293 R 882 CDS YP_011441.1 46580633 2795555 complement(2320741..2321475) 1 NC_002937.3 identified by similarity to GP:4426946; match to protein family HMM PF00691; motB protein 2321475 2795555 DVU2228 Desulfovibrio vulgaris str. Hildenborough motB protein YP_011441.1 2320741 R 882 CDS YP_011442.1 46580634 2795556 complement(2321459..2322220) 1 NC_002937.3 identified by similarity to SP:P28611; match to protein family HMM PF01618; chemotaxis protein MotA 2322220 motA-2 2795556 motA-2 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein MotA YP_011442.1 2321459 R 882 CDS YP_011443.1 46580635 2795557 2322336..2323160 1 NC_002937.3 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2323160 deoD 2795557 deoD Desulfovibrio vulgaris str. Hildenborough purine nucleoside phosphorylase YP_011443.1 2322336 D 882 CDS YP_011444.1 46580636 2795558 2323364..2325205 1 NC_002937.3 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 2325205 typA 2795558 typA Desulfovibrio vulgaris str. Hildenborough GTP-binding protein TypA YP_011444.1 2323364 D 882 CDS YP_011445.1 46580637 2795559 2325641..2326009 1 NC_002937.3 hypothetical protein 2326009 2795559 DVU2232 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011445.1 2325641 D 882 CDS YP_011446.1 46580638 2795560 complement(2326274..2327251) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA00369; match to protein family HMM PF00561; hypothetical protein 2327251 2795560 DVU2233 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011446.1 2326274 R 882 CDS YP_011447.1 46580639 2795561 2327596..2328765 1 NC_002937.3 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275; hypothetical protein 2328765 2795561 DVU2234 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011447.1 2327596 D 882 CDS YP_011448.1 46580640 2795562 2328874..2329083 1 NC_002937.3 identified by similarity to OMNI:NTL03CP1242; hypothetical protein 2329083 2795562 DVU2235 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011448.1 2328874 D 882 CDS YP_011449.1 46580641 2795563 2329093..2329197 1 NC_002937.3 hypothetical protein 2329197 2795563 DVU2236 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011449.1 2329093 D 882 CDS YP_011450.1 46580642 2795564 complement(2329256..2330218) 1 NC_002937.3 identified by match to protein family HMM PF03186; cobalamin biosynthesis protein CobD 2330218 2795564 DVU2237 Desulfovibrio vulgaris str. Hildenborough cobalamin biosynthesis protein CobD YP_011450.1 2329256 R 882 CDS YP_011451.1 46580643 2795390 complement(2330215..2330694) 1 NC_002937.3 identified by match to protein family HMM PF00588; RNA methyltransferase 2330694 2795390 DVU2238 Desulfovibrio vulgaris str. Hildenborough RNA methyltransferase YP_011451.1 2330215 R 882 CDS YP_011452.1 46580644 2795391 complement(2330937..2332382) 1 NC_002937.3 identified by match to protein family HMM PF00933; glycosyl hydrolase 2332382 2795391 DVU2239 Desulfovibrio vulgaris str. Hildenborough glycosyl hydrolase YP_011452.1 2330937 R 882 CDS YP_011453.1 46580645 2795392 complement(2332382..2334034) 1 NC_002937.3 identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoinase/oxoprolinase 2334034 2795392 DVU2240 Desulfovibrio vulgaris str. Hildenborough hydantoinase/oxoprolinase YP_011453.1 2332382 R 882 CDS YP_011454.1 46580646 2795393 complement(2334036..2335256) 1 NC_002937.3 identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; pyridoxal phosphate biosynthetic protein PdxA 2335256 pdxA 2795393 pdxA Desulfovibrio vulgaris str. Hildenborough pyridoxal phosphate biosynthetic protein PdxA YP_011454.1 2334036 R 882 CDS YP_011455.1 46580647 2795394 complement(2335527..2336474) 1 NC_002937.3 identified by similarity to SP:Q47898; match to protein family HMM PF01112; asparaginase 2336474 2795394 DVU2242 Desulfovibrio vulgaris str. Hildenborough asparaginase YP_011455.1 2335527 R 882 CDS YP_011456.1 46580648 2795395 complement(2336760..2338682) 1 NC_002937.3 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2338682 glgB 2795395 glgB Desulfovibrio vulgaris str. Hildenborough glycogen branching protein YP_011456.1 2336760 R 882 CDS YP_011457.1 46580649 2795396 complement(2338679..2340148) 1 NC_002937.3 identified by similarity to SP:P08323; match to protein family HMM PF00534; match to protein family HMM TIGR02095; glycogen synthase 2340148 glgA 2795396 glgA Desulfovibrio vulgaris str. Hildenborough glycogen synthase YP_011457.1 2338679 R 882 CDS YP_011458.1 46580650 2795397 complement(2340177..2340593) 1 NC_002937.3 identified by match to protein family HMM PF00293; mutT/nudix family protein 2340593 2795397 DVU2245 Desulfovibrio vulgaris str. Hildenborough mutT/nudix family protein YP_011458.1 2340177 R 882 CDS YP_003858619.1 304569747 9714846 complement(2341387..2341623) 1 NC_002937.3 hypothetical protein 2341623 9714846 DVU4006 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858619.1 2341387 R 882 CDS YP_011459.1 46580651 2795398 2341713..2343884 1 NC_002937.3 identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 2343884 2795398 DVU2246 Desulfovibrio vulgaris str. Hildenborough S1 RNA-binding domain-containing protein YP_011459.1 2341713 D 882 CDS YP_011460.1 46580652 2795399 complement(2344057..2344671) 1 NC_002937.3 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 2344671 2795399 DVU2247 Desulfovibrio vulgaris str. Hildenborough anti-oxidant AhpCTSA family protein YP_011460.1 2344057 R 882 CDS YP_011461.1 46580653 2795400 2344699..2344803 1 NC_002937.3 hypothetical protein 2344803 2795400 DVU2248 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011461.1 2344699 D 882 CDS YP_011462.1 46580654 2795401 complement(2344778..2344918) 1 NC_002937.3 hypothetical protein 2344918 2795401 DVU2249 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011462.1 2344778 R 882 CDS YP_011463.1 46580655 2795402 complement(2344952..2346607) 1 NC_002937.3 identified by match to protein family HMM PF00501; AMP-binding protein 2346607 2795402 DVU2250 Desulfovibrio vulgaris str. Hildenborough AMP-binding protein YP_011463.1 2344952 R 882 CDS YP_011464.1 46580656 2795403 complement(2346940..2347500) 1 NC_002937.3 identified by match to protein family HMM PF01381; DNA-binding protein 2347500 2795403 DVU2251 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_011464.1 2346940 R 882 CDS YP_011465.1 46580657 2794074 complement(2347717..2349192) 1 NC_002937.3 identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 2349192 dnaA-2 2794074 dnaA-2 Desulfovibrio vulgaris str. Hildenborough chromosomal replication initiator protein DnaA YP_011465.1 2347717 R 882 CDS YP_011466.1 46580658 2794075 2349297..2349479 1 NC_002937.3 hypothetical protein 2349479 2794075 DVU2253 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011466.1 2349297 D 882 CDS YP_011467.1 46580659 2794076 complement(2349512..2350249) 1 NC_002937.3 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 2350249 thyX 2794076 thyX Desulfovibrio vulgaris str. Hildenborough FAD-dependent thymidylate synthase YP_011467.1 2349512 R 882 CDS YP_011468.1 46580660 2794077 complement(2350267..2351229) 1 NC_002937.3 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2351229 ruvB 2794077 ruvB Desulfovibrio vulgaris str. Hildenborough Holliday junction DNA helicase RuvB YP_011468.1 2350267 R 882 CDS YP_011469.1 46580661 2794078 complement(2351230..2351838) 1 NC_002937.3 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2351838 ruvA 2794078 ruvA Desulfovibrio vulgaris str. Hildenborough Holliday junction DNA helicase RuvA YP_011469.1 2351230 R 882 CDS YP_011470.1 46580662 2794079 complement(2351877..2352035) 1 NC_002937.3 hypothetical protein 2352035 2794079 DVU2257 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011470.1 2351877 R 882 CDS YP_011471.1 46580663 2794080 complement(2352212..2352712) 1 NC_002937.3 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2352712 ruvC 2794080 ruvC Desulfovibrio vulgaris str. Hildenborough Holliday junction resolvase YP_011471.1 2352212 R 882 CDS YP_011472.1 46580664 2794081 complement(2352787..2353530) 1 NC_002937.3 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 2353530 2794081 DVU2259 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011472.1 2352787 R 882 CDS YP_011473.1 46580665 2794082 complement(2353584..2354198) 1 NC_002937.3 identified by similarity to SP:P28692; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 2354198 rrmJ 2794082 rrmJ Desulfovibrio vulgaris str. Hildenborough ribosomal RNA large subunit methyltransferase J YP_011473.1 2353584 R 882 CDS YP_011474.1 46580666 2794083 2354254..2356068 1 NC_002937.3 hypothetical protein 2356068 2794083 DVU2261 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011474.1 2354254 D 882 CDS YP_011475.1 46580667 2794085 complement(2356421..2356549) 1 NC_002937.3 hypothetical protein 2356549 2794085 DVU2262 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011475.1 2356421 R 882 CDS YP_011476.1 46580668 2794086 complement(2356696..2358621) 1 NC_002937.3 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; outer membrane autotransporter 2358621 2794086 DVU2263 Desulfovibrio vulgaris str. Hildenborough outer membrane autotransporter YP_011476.1 2356696 R 882 CDS YP_011477.1 46580669 2794087 2358673..2358825 1 NC_002937.3 hypothetical protein 2358825 2794087 DVU2264 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011477.1 2358673 D 882 CDS YP_011478.1 46580670 2795221 complement(2358809..2358913) 1 NC_002937.3 hypothetical protein 2358913 2795221 DVU2265 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011478.1 2358809 R 882 CDS YP_011479.1 46580671 2795222 complement(2358928..2359056) 1 NC_002937.3 hypothetical protein 2359056 2795222 DVU2266 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011479.1 2358928 R 882 CDS YP_011480.1 46580672 2795223 complement(2359130..2359423) 1 NC_002937.3 hypothetical protein 2359423 2795223 DVU2267 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011480.1 2359130 R 882 CDS YP_011481.1 46580673 2795224 2359465..2359584 1 NC_002937.3 hypothetical protein 2359584 2795224 DVU2268 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011481.1 2359465 D 882 CDS YP_011482.1 46580674 2795225 complement(2359725..2359892) 1 NC_002937.3 hypothetical protein 2359892 2795225 DVU2269 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011482.1 2359725 R 882 CDS YP_011483.1 46580675 2795226 complement(2359905..2360018) 1 NC_002937.3 hypothetical protein 2360018 2795226 DVU2270 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011483.1 2359905 R 882 CDS YP_011484.1 46580676 2795227 complement(2360039..2360932) 1 NC_002937.3 identified by similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase activating enzyme 2360932 2795227 DVU2271 Desulfovibrio vulgaris str. Hildenborough pyruvate formate-lyase activating enzyme YP_011484.1 2360039 R 882 CDS YP_011485.1 46580677 2795228 complement(2361044..2363497) 1 NC_002937.3 identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901; formate acetyltransferase 2363497 2795228 DVU2272 Desulfovibrio vulgaris str. Hildenborough formate acetyltransferase YP_011485.1 2361044 R 882 CDS YP_011486.1 46580678 2795229 2363581..2363910 1 NC_002937.3 hypothetical protein 2363910 2795229 DVU2273 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011486.1 2363581 D 882 CDS YP_011487.1 46580679 2795230 complement(2363792..2363929) 1 NC_002937.3 hypothetical protein 2363929 2795230 DVU2274 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011487.1 2363792 R 882 CDS YP_011488.1 46580680 2795231 2363991..2365445 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2365445 2795231 DVU2275 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_011488.1 2363991 D 882 CDS YP_011489.1 46580681 2795232 complement(2365527..2366273) 1 NC_002937.3 identified by match to protein family HMM PF01925; hypothetical protein 2366273 2795232 DVU2276 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011489.1 2365527 R 882 CDS YP_011490.1 46580682 2795233 complement(2366254..2366865) 1 NC_002937.3 hypothetical protein 2366865 2795233 DVU2277 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011490.1 2366254 R 882 CDS YP_011491.1 46580683 2795234 complement(2366929..2367780) 1 NC_002937.3 identified by match to protein family HMM PF00892; hypothetical protein 2367780 2795234 DVU2278 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011491.1 2366929 R 882 CDS YP_011492.1 46580684 2795235 complement(2367925..2368089) 1 NC_002937.3 hypothetical protein 2368089 2795235 DVU2279 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011492.1 2367925 R 882 CDS YP_011493.1 46580685 2795434 2368269..2369777 1 NC_002937.3 identified by match to protein family HMM PF00324; amino acid permease 2369777 2795434 DVU2280 Desulfovibrio vulgaris str. Hildenborough amino acid permease YP_011493.1 2368269 D 882 CDS YP_011494.1 46580686 2795435 complement(2369933..2372134) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 2372134 2795435 DVU2281 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase/response regulator YP_011494.1 2369933 R 882 CDS YP_011495.1 46580687 2795436 2372404..2373954 1 NC_002937.3 hypothetical protein 2373954 2795436 DVU2282 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011495.1 2372404 D 882 CDS YP_011496.1 46580688 2795437 2374131..2374232 1 NC_002937.3 hypothetical protein 2374232 2795437 DVU2283 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011496.1 2374131 D 882 CDS YP_011497.1 46580689 2795438 2374291..2374803 1 NC_002937.3 hypothetical protein 2374803 2795438 DVU2284 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011497.1 2374291 D 882 CDS YP_011498.1 46580690 2795439 complement(2375226..2376746) 1 NC_002937.3 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 2376746 2795439 DVU2285 Desulfovibrio vulgaris str. Hildenborough L-lactate permease YP_011498.1 2375226 R 882 CDS YP_011499.1 46580691 2795440 2377289..2381050 1 NC_002937.3 identified by similarity to GP:1515466; match to protein family HMM PF00361; hydrogenase subunit CooM 2381050 2795440 DVU2286 Desulfovibrio vulgaris str. Hildenborough hydrogenase subunit CooM YP_011499.1 2377289 D 882 CDS YP_011500.1 46580692 2795441 2381054..2382019 1 NC_002937.3 selenoprotein; identified by similarity to GP:1515467; match to protein family HMM PF00146; hydrogenase subunit CooK 2382019 2795441 DVU2287 Desulfovibrio vulgaris str. Hildenborough hydrogenase subunit CooK YP_011500.1 2381054 D 882 CDS YP_011501.1 46580693 2795442 2382032..2382466 1 NC_002937.3 identified by similarity to GP:1515468; match to protein family HMM PF01058; hydrogenase subunit CooL 2382466 2795442 DVU2288 Desulfovibrio vulgaris str. Hildenborough hydrogenase subunit CooL YP_011501.1 2382032 D 882 CDS YP_011502.1 46580694 2795443 2382468..2383103 1 NC_002937.3 identified by match to protein family HMM PF00037; hydrogenase subunit CooX 2383103 2795443 DVU2289 Desulfovibrio vulgaris str. Hildenborough hydrogenase subunit CooX YP_011502.1 2382468 D 882 CDS YP_011503.2 304569716 2795444 2383100..2383645 1 NC_002937.3 identified by similarity to GP:1515470; match to protein family HMM PF00329; hydrogenase subunit CooU 2383645 2795444 DVU2290 Desulfovibrio vulgaris str. Hildenborough hydrogenase subunit CooU YP_011503.2 2383100 D 882 CDS YP_011504.1 46580696 2795445 2383642..2384742 1 NC_002937.3 identified by similarity to SP:P31895; match to protein family HMM PF00346; carbon monoxide-induced hydrogenase CooH 2384742 2795445 DVU2291 Desulfovibrio vulgaris str. Hildenborough carbon monoxide-induced hydrogenase CooH YP_011504.1 2383642 D 882 CDS YP_011505.1 46580697 2795446 2384751..2385113 1 NC_002937.3 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA 2385113 hypA 2795446 hypA Desulfovibrio vulgaris str. Hildenborough hydrogenase nickel incorporation protein HypA YP_011505.1 2384751 D 882 CDS YP_011506.1 46580698 2795447 2385110..2385631 1 NC_002937.3 identified by similarity to SP:P31894; match to protein family HMM PF00037; iron-sulfur protein CooF 2385631 cooF 2795447 cooF Desulfovibrio vulgaris str. Hildenborough iron-sulfur protein CooF YP_011506.1 2385110 D 882 CDS YP_011507.1 46580699 2795448 complement(2385828..2386907) 1 NC_002937.3 identified by match to protein family HMM PF02388; femAB family protein 2386907 2795448 DVU2294 Desulfovibrio vulgaris str. Hildenborough femAB family protein YP_011507.1 2385828 R 882 CDS YP_011508.1 46580700 2795449 complement(2387414..2389744) 1 NC_002937.3 identified by similarity to OMNI:VC1289; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2389744 2795449 DVU2295 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011508.1 2387414 R 882 CDS YP_011509.1 46580701 2795342 2390172..2390918 1 NC_002937.3 identified by similarity to SP:Q51005; match to protein family HMM PF00912; match to protein family HMM TIGR02070; monofunctional biosynthetic peptidoglycan transglycosylase 2390918 mtgA 2795342 mtgA Desulfovibrio vulgaris str. Hildenborough monofunctional biosynthetic peptidoglycan transglycosylase YP_011509.1 2390172 D 882 CDS YP_011510.1 46580702 2795343 complement(2391131..2391988) 1 NC_002937.3 identified by match to protein family HMM PF04069; glycine betaine/L-proline ABC transporter substrate-binding protein 2391988 2795343 DVU2297 Desulfovibrio vulgaris str. Hildenborough glycine betaine/L-proline ABC transporter substrate-binding protein YP_011510.1 2391131 R 882 CDS YP_011511.1 46580703 2795344 complement(2392146..2392997) 1 NC_002937.3 identified by similarity to SP:P46921; match to protein family HMM PF00528; glycine/betaine/L-proline ABC transporter permease 2392997 2795344 DVU2298 Desulfovibrio vulgaris str. Hildenborough glycine/betaine/L-proline ABC transporter permease YP_011511.1 2392146 R 882 CDS YP_011512.1 46580704 2795345 complement(2392994..2394187) 1 NC_002937.3 identified by similarity to SP:P17328; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/L-proline ABC transporter ATP-binding protein 2394187 2795345 DVU2299 Desulfovibrio vulgaris str. Hildenborough glycine betaine/L-proline ABC transporter ATP-binding protein YP_011512.1 2392994 R 882 CDS YP_011513.1 46580705 2795346 complement(2394323..2394478) 1 NC_002937.3 hypothetical protein 2394478 2795346 DVU2300 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011513.1 2394323 R 882 CDS YP_011514.1 46580706 2795347 complement(2394492..2394629) 1 NC_002937.3 lipoprotein 2394629 2795347 DVU2301 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011514.1 2394492 R 882 CDS YP_011515.1 46580707 2795348 2394641..2396659 1 NC_002937.3 identified by similarity to OMNI:NTL01MM0929; match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254; glutathione-regulated potassium-efflux system protein KefB 2396659 2795348 DVU2302 Desulfovibrio vulgaris str. Hildenborough glutathione-regulated potassium-efflux system protein KefB YP_011515.1 2394641 D 882 CDS YP_011516.1 46580708 2795349 2396735..2398162 1 NC_002937.3 hypothetical protein 2398162 2795349 DVU2303 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011516.1 2396735 D 882 CDS YP_011517.1 46580709 2795350 2398174..2398410 1 NC_002937.3 hypothetical protein 2398410 2795350 DVU2304 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011517.1 2398174 D 882 CDS YP_011518.1 46580710 2795351 2398490..2399119 1 NC_002937.3 identified by similarity to OMNI:NTL01RS1312; match to protein family HMM PF01865; hypothetical protein 2399119 2795351 DVU2305 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011518.1 2398490 D 882 CDS YP_011519.1 46580711 2795352 2399112..2400122 1 NC_002937.3 identified by similarity to GP:15026158; match to protein family HMM PF01384; phosphate transporter family protein 2400122 2795352 DVU2306 Desulfovibrio vulgaris str. Hildenborough phosphate transporter family protein YP_011519.1 2399112 D 882 CDS YP_011520.1 46580712 2795353 complement(2400220..2400441) 1 NC_002937.3 identified by match to protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 2400441 2795353 DVU2307 Desulfovibrio vulgaris str. Hildenborough C4-type zinc finger DksA/TraR family protein YP_011520.1 2400220 R 882 CDS YP_011521.1 46580713 2795354 complement(2400453..2400944) 1 NC_002937.3 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 2400944 2795354 DVU2308 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011521.1 2400453 R 882 CDS YP_011522.1 46580714 2795355 2401206..2403293 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 2403293 2795355 DVU2309 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011522.1 2401206 D 882 CDS YP_011523.1 46580715 2795270 2403522..2404268 1 NC_002937.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2404268 2795270 DVU2310 Desulfovibrio vulgaris str. Hildenborough metallo-beta-lactamase YP_011523.1 2403522 D 882 CDS YP_003858620.1 304569750 9714845 2404636..2405895 1 NC_002937.3 hypothetical protein 2405895 9714845 DVU4009 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858620.1 2404636 D 882 CDS YP_011525.1 46580717 2795272 2405929..2406396 1 NC_002937.3 hypothetical protein 2406396 2795272 DVU2312 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011525.1 2405929 D 882 CDS YP_011526.1 46580718 2795273 2406614..2407363 1 NC_002937.3 identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198; 6-phosphogluconolactonase 2407363 pgl 2795273 pgl Desulfovibrio vulgaris str. Hildenborough 6-phosphogluconolactonase YP_011526.1 2406614 D 882 CDS YP_011527.1 46580719 2795274 2407508..2407648 1 NC_002937.3 hypothetical protein 2407648 2795274 DVU2314 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011527.1 2407508 D 882 CDS YP_011528.1 46580720 2795275 complement(2407645..2408373) 1 NC_002937.3 identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein 2408373 2795275 DVU2315 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011528.1 2407645 R 882 CDS YP_011529.1 46580721 2795276 2408456..2411044 1 NC_002937.3 identified by similarity to SP:P14294; match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056; DNA topoisomerase III 2411044 topB 2795276 topB Desulfovibrio vulgaris str. Hildenborough DNA topoisomerase III YP_011529.1 2408456 D 882 CDS YP_011530.1 46580722 2795277 2411334..2413103 1 NC_002937.3 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 2413103 2795277 DVU2317 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011530.1 2411334 D 882 CDS YP_011531.1 46580723 2795278 2413715..2414209 1 NC_002937.3 identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin 2414209 2795278 DVU2318 Desulfovibrio vulgaris str. Hildenborough rubrerythrin YP_011531.1 2413715 D 882 CDS YP_011532.1 46580724 2795279 2414335..2414991 1 NC_002937.3 identified by match to protein family HMM PF00486; transcriptional regulator domain-containing protein 2414991 2795279 DVU2319 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator domain-containing protein YP_011532.1 2414335 D 882 CDS YP_011533.1 46580725 2795280 2415017..2416855 1 NC_002937.3 identified by match to protein family HMM PF01977; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2416855 2795280 DVU2320 Desulfovibrio vulgaris str. Hildenborough 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_011533.1 2415017 D 882 CDS YP_011534.1 46580726 2795281 complement(2417136..2417333) 1 NC_002937.3 hypothetical protein 2417333 2795281 DVU2321 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011534.1 2417136 R 882 CDS YP_011535.1 46580727 2795282 2417314..2418753 1 NC_002937.3 identified by match to protein family HMM PF01704; UTP--glucose-1-phosphate uridylyltransferase 2418753 2795282 DVU2322 Desulfovibrio vulgaris str. Hildenborough UTP--glucose-1-phosphate uridylyltransferase YP_011535.1 2417314 D 882 CDS YP_011536.1 46580728 2795283 2419003..2419425 1 NC_002937.3 hypothetical protein 2419425 2795283 DVU2323 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011536.1 2419003 D 882 CDS YP_011537.1 46580729 2795284 complement(2419638..2422355) 1 NC_002937.3 identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2422355 2795284 DVU2324 Desulfovibrio vulgaris str. Hildenborough copper-translocating P-type ATPase YP_011537.1 2419638 R 882 CDS YP_011538.1 46580730 2795285 2422628..2422825 1 NC_002937.3 identified by similarity to SP:P04131; match to protein family HMM PF00403; mercuric transport periplasmic protein 2422825 merP 2795285 merP Desulfovibrio vulgaris str. Hildenborough mercuric transport periplasmic protein YP_011538.1 2422628 D 882 CDS YP_011539.1 46580731 2793799 complement(2422922..2423824) 1 NC_002937.3 identified by similarity to GP:3978519; hypothetical protein 2423824 2793799 DVU2326 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011539.1 2422922 R 882 CDS YP_003858621.1 304569757 9714844 complement(2423824..2424249) 1 NC_002937.3 hypothetical protein 2424249 9714844 DVU4016 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858621.1 2423824 R 882 CDS YP_011541.1 46580733 2793801 2424814..2425167 1 NC_002937.3 identified by match to protein family HMM PF01155; hydrogenase nickel incorporation protein HypA 2425167 2793801 DVU2328 Desulfovibrio vulgaris str. Hildenborough hydrogenase nickel incorporation protein HypA YP_011541.1 2424814 D 882 CDS YP_011542.1 46580734 2793802 2425178..2425852 1 NC_002937.3 identified by similarity to SP:P24190; match to protein family HMM PF01495; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 2425852 hypB 2793802 hypB Desulfovibrio vulgaris str. Hildenborough hydrogenase nickel incorporation protein HypB YP_011542.1 2425178 D 882 CDS YP_011543.1 46580735 2793803 2425849..2426730 1 NC_002937.3 identified by similarity to SP:P53383; MRP family protein 2426730 2793803 DVU2330 Desulfovibrio vulgaris str. Hildenborough MRP family protein YP_011543.1 2425849 D 882 CDS YP_011544.1 46580736 2793804 2427033..2428262 1 NC_002937.3 identified by match to protein family HMM PF01713; Smr family protein 2428262 2793804 DVU2331 Desulfovibrio vulgaris str. Hildenborough Smr family protein YP_011544.1 2427033 D 882 CDS YP_011545.1 46580737 2793805 complement(2428593..2429390) 1 NC_002937.3 identified by similarity to SP:P00373; match to protein family HMM PF01089; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 2429390 proC 2793805 proC Desulfovibrio vulgaris str. Hildenborough pyrroline-5-carboxylate reductase YP_011545.1 2428593 R 882 CDS YP_011546.1 46580738 2793806 complement(2429390..2429809) 1 NC_002937.3 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2429809 ndk 2793806 ndk Desulfovibrio vulgaris str. Hildenborough nucleoside diphosphate kinase YP_011546.1 2429390 R 882 CDS YP_011547.1 46580739 2793807 2429794..2430078 1 NC_002937.3 hypothetical protein 2430078 2793807 DVU2334 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011547.1 2429794 D 882 CDS YP_011548.1 46580740 2793808 complement(2430361..2431911) 1 NC_002937.3 identified by similarity to SP:P37691; match to protein family HMM PF04748; hypothetical protein 2431911 2793808 DVU2335 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011548.1 2430361 R 882 CDS YP_011549.1 46580741 2793809 complement(2431992..2433278) 1 NC_002937.3 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 2433278 2793809 DVU2336 Desulfovibrio vulgaris str. Hildenborough carboxyl-terminal protease YP_011549.1 2431992 R 882 CDS YP_011550.1 46580742 2793810 complement(2433311..2434462) 1 NC_002937.3 identified by match to protein family HMM PF01551; M24/M37 family peptidase 2434462 2793810 DVU2337 Desulfovibrio vulgaris str. Hildenborough M24/M37 family peptidase YP_011550.1 2433311 R 882 CDS YP_011551.1 46580743 2793811 complement(2434492..2435172) 1 NC_002937.3 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; HhH-GPD family DNA repair protein 2435172 2793811 DVU2338 Desulfovibrio vulgaris str. Hildenborough HhH-GPD family DNA repair protein YP_011551.1 2434492 R 882 CDS YP_011552.1 46580744 2793812 complement(2435422..2436273) 1 NC_002937.3 50S ribosomal protein L11 methyltransferase 2436273 2793812 DVU2339 Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L11 methyltransferase YP_011552.1 2435422 R 882 CDS YP_011553.1 46580745 2795514 complement(2436277..2436969) 1 NC_002937.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 2436969 2795514 DVU2340 Desulfovibrio vulgaris str. Hildenborough His/Glu/Gln/Arg/opine ABC transporter permease YP_011553.1 2436277 R 882 CDS YP_011554.1 46580746 2795515 complement(2436980..2437681) 1 NC_002937.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 2437681 2795515 DVU2341 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter permease YP_011554.1 2436980 R 882 CDS YP_011555.1 46580747 2795516 complement(2437743..2438555) 1 NC_002937.3 identified by match to protein family HMM PF00497; amino acid ABC transporter periplasmic amino acid-binding protein 2438555 2795516 DVU2342 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter periplasmic amino acid-binding protein YP_011555.1 2437743 R 882 CDS YP_011556.1 46580748 2795517 complement(2438613..2439341) 1 NC_002937.3 identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 2439341 2795517 DVU2343 Desulfovibrio vulgaris str. Hildenborough amino acid ABC transporter ATP-binding protein YP_011556.1 2438613 R 882 CDS YP_011557.1 46580749 2795518 2439629..2439727 1 NC_002937.3 hypothetical protein 2439727 2795518 DVU2344 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011557.1 2439629 D 882 CDS YP_011558.1 46580750 2795519 complement(2439751..2440071) 1 NC_002937.3 hypothetical protein 2440071 2795519 DVU2345 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011558.1 2439751 R 882 CDS YP_011559.1 46580751 2795520 2440093..2440350 1 NC_002937.3 hypothetical protein 2440350 2795520 DVU2346 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011559.1 2440093 D 882 CDS YP_011560.1 46580752 2795521 complement(2440531..2441730) 1 NC_002937.3 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2441730 argD 2795521 argD Desulfovibrio vulgaris str. Hildenborough acetylornithine aminotransferase YP_011560.1 2440531 R 882 CDS YP_011561.1 46580753 2795522 complement(2441935..2442396) 1 NC_002937.3 identified by similarity to SP:P06968; match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5'-triphosphate nucleotidohydrolase 2442396 dut 2795522 dut Desulfovibrio vulgaris str. Hildenborough deoxyuridine 5'-triphosphate nucleotidohydrolase YP_011561.1 2441935 R 882 CDS YP_011562.1 46580754 2795523 2442630..2445197 1 NC_002937.3 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094; carbohydrate phosphorylase 2445197 2795523 DVU2349 Desulfovibrio vulgaris str. Hildenborough carbohydrate phosphorylase YP_011562.1 2442630 D 882 CDS YP_011563.1 46580755 2795524 2445526..2446950 1 NC_002937.3 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2446950 gid 2795524 gid Desulfovibrio vulgaris str. Hildenborough tRNA (uracil-5-)-methyltransferase Gid YP_011563.1 2445526 D 882 CDS YP_011564.1 46580756 2795525 2447023..2447391 1 NC_002937.3 hypothetical protein 2447391 2795525 DVU2351 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011564.1 2447023 D 882 CDS YP_011565.1 46580757 2795526 complement(2447492..2449129) 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2449129 2795526 DVU2352 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_011565.1 2447492 R 882 CDS YP_011566.1 46580758 2795527 2449172..2450980 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2450980 2795527 DVU2353 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_011566.1 2449172 D 882 CDS YP_011567.1 46580759 2795528 2450977..2452224 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2452224 2795528 DVU2354 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_011567.1 2450977 D 882 CDS YP_011568.1 46580760 2796514 complement(2452485..2453075) 1 NC_002937.3 identified by similarity to SP:P19396; similarity to GP:11079208; match to protein family HMM PF00588; tRNA (guanosine-2'-O-)-methyltransferase 2453075 trmH 2796514 trmH Desulfovibrio vulgaris str. Hildenborough tRNA (guanosine-2'-O-)-methyltransferase YP_011568.1 2452485 R 882 CDS YP_011569.1 46580761 2796515 2453277..2454704 1 NC_002937.3 hypothetical protein 2454704 2796515 DVU2356 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011569.1 2453277 D 882 CDS YP_011570.2 304569717 2796516 complement(2455000..2456109) 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 2456109 2796516 DVU2357 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_011570.2 2455000 R 882 CDS YP_011571.1 46580763 2796517 complement(2456141..2456233) 1 NC_002937.3 hypothetical protein 2456233 2796517 DVU2358 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011571.1 2456141 R 882 CDS YP_011572.1 46580764 2796518 2456656..2458311 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2458311 2796518 DVU2359 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_011572.1 2456656 D 882 CDS YP_011573.1 46580765 2796519 2458415..2459221 1 NC_002937.3 identified by similarity to SP:P49852; match to protein family HMM PF00175; match to protein family HMM PF00970; FAD/NAD-binding family oxidoreductase 2459221 2796519 DVU2360 Desulfovibrio vulgaris str. Hildenborough FAD/NAD-binding family oxidoreductase YP_011573.1 2458415 D 882 CDS YP_011574.1 46580766 2796520 complement(2459206..2459352) 1 NC_002937.3 hypothetical protein 2459352 2796520 DVU2361 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011574.1 2459206 R 882 CDS YP_011575.1 46580767 2796521 complement(2459445..2460104) 1 NC_002937.3 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 2460104 thiE 2796521 thiE Desulfovibrio vulgaris str. Hildenborough thiamine-phosphate pyrophosphorylase YP_011575.1 2459445 R 882 CDS YP_011576.1 46580768 2796522 complement(2460101..2460904) 1 NC_002937.3 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2460904 thiM 2796522 thiM Desulfovibrio vulgaris str. Hildenborough hydroxyethylthiazole kinase YP_011576.1 2460101 R 882 CDS YP_011577.1 46580769 2796523 complement(2461234..2462400) 1 NC_002937.3 identified by match to protein family HMM PF00155; class I/II aminotransferase 2462400 2796523 DVU2364 Desulfovibrio vulgaris str. Hildenborough class I/II aminotransferase YP_011577.1 2461234 R 882 CDS YP_011578.1 46580770 2796524 complement(2462435..2463259) 1 NC_002937.3 identified by similarity to OMNI:CC1910; hypothetical protein 2463259 2796524 DVU2365 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011578.1 2462435 R 882 CDS YP_011579.1 46580771 2796525 2463287..2463415 1 NC_002937.3 hypothetical protein 2463415 2796525 DVU2366 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011579.1 2463287 D 882 CDS YP_011580.1 46580772 2796526 complement(2463471..2464274) 1 NC_002937.3 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2464274 lpxA 2796526 lpxA Desulfovibrio vulgaris str. Hildenborough UDP-N-acetylglucosamine acyltransferase YP_011580.1 2463471 R 882 CDS YP_011581.1 46580773 2796527 complement(2464274..2464738) 1 NC_002937.3 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2464738 fabZ 2796527 fabZ Desulfovibrio vulgaris str. Hildenborough (3R)-hydroxymyristoyl-ACP dehydratase YP_011581.1 2464274 R 882 CDS YP_011582.1 46580774 2796528 complement(2464738..2465772) 1 NC_002937.3 identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase 2465772 lpxD 2796528 lpxD Desulfovibrio vulgaris str. Hildenborough UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase YP_011582.1 2464738 R 882 CDS YP_011583.1 46580775 2796103 complement(2465783..2466310) 1 NC_002937.3 identified by similarity to SP:P31519; match to protein family HMM PF03938; outer membrane protein OmpH 2466310 2796103 DVU2370 Desulfovibrio vulgaris str. Hildenborough outer membrane protein OmpH YP_011583.1 2465783 R 882 CDS YP_011584.1 46580776 2796104 complement(2466461..2468092) 1 NC_002937.3 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 2468092 2796104 DVU2371 Desulfovibrio vulgaris str. Hildenborough N-acetylmuramoyl-L-alanine amidase YP_011584.1 2466461 R 882 CDS YP_011585.1 46580777 2796105 complement(2468097..2468462) 1 NC_002937.3 hypothetical protein 2468462 2796105 DVU2372 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011585.1 2468097 R 882 CDS YP_011586.2 304569718 2796106 complement(2468564..2471185) 1 NC_002937.3 identified by match to protein family HMM PF01103; OMP85 family outer membrane protein 2471185 2796106 DVU2373 Desulfovibrio vulgaris str. Hildenborough OMP85 family outer membrane protein YP_011586.2 2468564 R 882 CDS YP_011587.1 46580779 2796107 complement(2471235..2471936) 1 NC_002937.3 identified by similarity to SP:P75957; match to protein family HMM PF00005; lipoprotein releasing system, ATP-binding protein 2471936 lolD 2796107 lolD Desulfovibrio vulgaris str. Hildenborough lipoprotein releasing system, ATP-binding protein YP_011587.1 2471235 R 882 CDS YP_011588.1 46580780 2796108 complement(2471933..2473168) 1 NC_002937.3 identified by similarity to SP:P75956; match to protein family HMM PF02687; lipoprotein releasing system, permease 2473168 2796108 DVU2375 Desulfovibrio vulgaris str. Hildenborough lipoprotein releasing system, permease YP_011588.1 2471933 R 882 CDS YP_011589.2 304569719 2796109 complement(2473176..2474720) 1 NC_002937.3 identified by similarity to SP:P41255; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; lysyl-tRNA synthetase 2474720 lysS 2796109 lysS Desulfovibrio vulgaris str. Hildenborough lysyl-tRNA synthetase YP_011589.2 2473176 R 882 CDS YP_011590.1 46580782 2796111 complement(2475373..2475504) 1 NC_002937.3 hypothetical protein 2475504 2796111 DVU2377 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011590.1 2475373 R 882 CDS YP_011591.1 46580783 2796112 2475614..2476306 1 NC_002937.3 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2476306 2796112 DVU2378 Desulfovibrio vulgaris str. Hildenborough AraC family transcriptional regulator YP_011591.1 2475614 D 882 CDS YP_011592.1 46580784 2796113 2476431..2479448 1 NC_002937.3 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 2479448 2796113 DVU2379 Desulfovibrio vulgaris str. Hildenborough M16 family peptidase YP_011592.1 2476431 D 882 CDS YP_011593.1 46580785 2796114 2479445..2480350 1 NC_002937.3 identified by similarity to SP:P72335; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2480350 2796114 DVU2380 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_011593.1 2479445 D 882 CDS YP_011594.1 46580786 2796115 2480368..2481036 1 NC_002937.3 identified by similarity to GP:29340941; hypothetical protein 2481036 2796115 DVU2381 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011594.1 2480368 D 882 CDS YP_011595.1 46580787 2796116 2481033..2482397 1 NC_002937.3 identified by similarity to GP:29340940; hypothetical protein 2482397 2796116 DVU2382 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011595.1 2481033 D 882 CDS YP_011596.1 46580788 2796117 2482430..2485057 1 NC_002937.3 identified by match to protein family HMM PF00593; TonB dependent receptor domain-containing protein 2485057 2796117 DVU2383 Desulfovibrio vulgaris str. Hildenborough TonB dependent receptor domain-containing protein YP_011596.1 2482430 D 882 CDS YP_011597.1 46580789 2795286 2485110..2487029 1 NC_002937.3 identified by match to protein family HMM PF00496; ABC transporter periplasmic substrate-binding protein 2487029 2795286 DVU2384 Desulfovibrio vulgaris str. Hildenborough ABC transporter periplasmic substrate-binding protein YP_011597.1 2485110 D 882 CDS YP_011598.1 46580790 2795287 2487029..2488150 1 NC_002937.3 identified by match to protein family HMM PF00528; ABC transporter permease 2488150 2795287 DVU2385 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_011598.1 2487029 D 882 CDS YP_011599.1 46580791 2795288 2488147..2489178 1 NC_002937.3 identified by match to protein family HMM PF00528; ABC transporter permease 2489178 2795288 DVU2386 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_011599.1 2488147 D 882 CDS YP_011600.1 46580792 2795289 2489184..2490962 1 NC_002937.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2490962 2795289 DVU2387 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_011600.1 2489184 D 882 CDS YP_011601.1 46580793 2795290 2490966..2491919 1 NC_002937.3 identified by similarity to SP:P05828; match to protein family HMM PF01618; tolQ protein 2491919 tolQ-1 2795290 tolQ-1 Desulfovibrio vulgaris str. Hildenborough tolQ protein YP_011601.1 2490966 D 882 CDS YP_011602.1 46580794 2795291 2491903..2492316 1 NC_002937.3 identified by match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 2492316 2795291 DVU2389 Desulfovibrio vulgaris str. Hildenborough biopolymer ExbD/TolR family transporter YP_011602.1 2491903 D 882 CDS YP_011603.1 46580795 2795292 2492313..2493221 1 NC_002937.3 identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB domain-containing protein 2493221 2795292 DVU2390 Desulfovibrio vulgaris str. Hildenborough TonB domain-containing protein YP_011603.1 2492313 D 882 CDS YP_011604.1 46580796 2795294 complement(2493730..2493873) 1 NC_002937.3 hypothetical protein 2493873 2795294 DVU2391 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011604.1 2493730 R 882 CDS YP_011605.1 46580797 2795295 2494058..2494510 1 NC_002937.3 CesT family type III secretion chaperone 2494510 2795295 DVU2392 Desulfovibrio vulgaris str. Hildenborough CesT family type III secretion chaperone YP_011605.1 2494058 D 882 CDS YP_003858622.1 304569751 9714843 2494623..2496719 1 NC_002937.3 hypothetical protein 2496719 9714843 DVU4010 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858622.1 2494623 D 882 CDS YP_011607.1 46580799 2795297 complement(2496966..2498357) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 2498357 2795297 DVU2394 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_011607.1 2496966 R 882 CDS YP_011608.2 304569720 2795298 complement(2498363..2499619) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2499619 2795298 DVU2395 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_011608.2 2498363 R 882 CDS YP_011609.1 46580801 2795299 complement(2499621..2500763) 1 NC_002937.3 identified by similarity to SP:P31005; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 2500763 2795299 DVU2396 Desulfovibrio vulgaris str. Hildenborough iron-containing alcohol dehydrogenase YP_011609.1 2499621 R 882 CDS YP_011610.1 46580802 2794482 complement(2501252..2501995) 1 NC_002937.3 hypothetical protein 2501995 2794482 DVU2397 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011610.1 2501252 R 882 CDS YP_011611.1 46580803 2794483 complement(2502202..2502693) 1 NC_002937.3 identified by similarity to OMNI:TM0095; hypothetical protein 2502693 2794483 DVU2398 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011611.1 2502202 R 882 CDS YP_011612.2 304569721 2794484 complement(2502951..2503838) 1 NC_002937.3 identified by similarity to GP:21327886; match to protein family HMM PF00175; match to protein family HMM PF00970; hydrogenase 2503838 2794484 DVU2399 Desulfovibrio vulgaris str. Hildenborough hydrogenase YP_011612.2 2502951 R 882 CDS YP_011613.1 46580805 2794485 complement(2503831..2504913) 1 NC_002937.3 identified by similarity to GP:21327885; hydrogenase 2504913 2794485 DVU2400 Desulfovibrio vulgaris str. Hildenborough hydrogenase YP_011613.1 2503831 R 882 CDS YP_011614.1 46580806 2794486 complement(2504910..2506394) 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF02662; hydrogenase, iron-sulfur cluster-binding subunit 2506394 2794486 DVU2401 Desulfovibrio vulgaris str. Hildenborough hydrogenase, iron-sulfur cluster-binding subunit YP_011614.1 2504910 R 882 CDS YP_011615.1 46580807 2794487 complement(2506382..2508340) 1 NC_002937.3 identified by similarity to GP:12642418; match to protein family HMM PF00037; heterodisulfide reductase subunit A 2508340 hdrA 2794487 hdrA Desulfovibrio vulgaris str. Hildenborough heterodisulfide reductase subunit A YP_011615.1 2506382 R 882 CDS YP_011616.1 46580808 2794488 complement(2508337..2509341) 1 NC_002937.3 identified by similarity to GP:3378542; match to protein family HMM PF02754; heterodisulfide reductase subunit B 2509341 hdrB 2794488 hdrB Desulfovibrio vulgaris str. Hildenborough heterodisulfide reductase subunit B YP_011616.1 2508337 R 882 CDS YP_011617.1 46580809 2794489 complement(2509338..2509898) 1 NC_002937.3 identified by similarity to GP:12642421; heterodisulfide reductase subunit C 2509898 hdrC 2794489 hdrC Desulfovibrio vulgaris str. Hildenborough heterodisulfide reductase subunit C YP_011617.1 2509338 R 882 CDS YP_011618.1 46580810 2794490 complement(2510126..2511307) 1 NC_002937.3 identified by similarity to GP:2393887; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 2511307 2794490 DVU2405 Desulfovibrio vulgaris str. Hildenborough iron-containing alcohol dehydrogenase YP_011618.1 2510126 R 882 CDS YP_011619.1 46580811 2794491 complement(2511342..2511548) 1 NC_002937.3 hypothetical protein 2511548 2794491 DVU2406 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011619.1 2511342 R 882 CDS YP_011620.1 46580812 2794492 complement(2511892..2512392) 1 NC_002937.3 identified by similarity to OMNI:NTL01PH01257; hypothetical protein 2512392 2794492 DVU2407 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011620.1 2511892 R 882 CDS YP_011621.1 46580813 2794493 complement(2512382..2512660) 1 NC_002937.3 hypothetical protein 2512660 2794493 DVU2408 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011621.1 2512382 R 882 CDS YP_011622.1 46580814 2794494 complement(2512747..2513559) 1 NC_002937.3 identified by match to protein family HMM PF00497; solute-binding family 3 protein 2513559 2794494 DVU2409 Desulfovibrio vulgaris str. Hildenborough solute-binding family 3 protein YP_011622.1 2512747 R 882 CDS YP_011623.2 304569722 2794495 2513845..2514531 1 NC_002937.3 identified by similarity to GP:2654175; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 2514531 sodB 2794495 sodB Desulfovibrio vulgaris str. Hildenborough superoxide dismutase, Fe YP_011623.2 2513845 D 882 CDS YP_011624.1 46580816 2794496 2514715..2515131 1 NC_002937.3 identified by match to protein family HMM PF00036; EF hand domain-containing protein 2515131 2794496 DVU2411 Desulfovibrio vulgaris str. Hildenborough EF hand domain-containing protein YP_011624.1 2514715 D 882 CDS YP_011625.1 46580817 2794353 complement(2515473..2518580) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2518580 2794353 DVU2412 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_011625.1 2515473 R 882 CDS YP_011626.1 46580818 2794354 2518594..2520636 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2520636 2794354 DVU2413 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_011626.1 2518594 D 882 CDS YP_011627.1 46580819 2794355 complement(2520831..2522591) 1 NC_002937.3 hypothetical protein 2522591 2794355 DVU2414 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011627.1 2520831 R 882 CDS YP_011628.1 46580820 2794356 2522644..2524371 1 NC_002937.3 hypothetical protein 2524371 2794356 DVU2415 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011628.1 2522644 D 882 CDS YP_011629.1 46580821 2794357 2524701..2525183 1 NC_002937.3 identified by similarity to GP:22294464; match to protein family HMM PF04543; hypothetical protein 2525183 2794357 DVU2416 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011629.1 2524701 D 882 CDS YP_011630.1 46580822 2794358 2525180..2525401 1 NC_002937.3 SlyX protein 2525401 2794358 DVU2417 Desulfovibrio vulgaris str. Hildenborough SlyX protein YP_011630.1 2525180 D 882 CDS YP_011631.1 46580823 2794359 complement(2525837..2526259) 1 NC_002937.3 identified by match to protein family HMM PF04892; vanZ-like family protein 2526259 2794359 DVU2418 Desulfovibrio vulgaris str. Hildenborough vanZ-like family protein YP_011631.1 2525837 R 882 CDS YP_011632.1 46580824 2794360 complement(2526617..2527171) 1 NC_002937.3 identified by similarity to GP:13752542; hypothetical protein 2527171 2794360 DVU2419 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011632.1 2526617 R 882 CDS YP_011633.1 46580825 2794361 complement(2527461..2527790) 1 NC_002937.3 identified by similarity to OMNI:NTL02ML3469; hypothetical protein 2527790 2794361 DVU2420 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011633.1 2527461 R 882 CDS YP_011634.1 46580826 2794362 complement(2527924..2528121) 1 NC_002937.3 identified by match to protein family HMM PF01361; 4-oxalocrotonate tautomerase 2528121 2794362 DVU2421 Desulfovibrio vulgaris str. Hildenborough 4-oxalocrotonate tautomerase YP_011634.1 2527924 R 882 CDS YP_011635.1 46580827 2794363 complement(2528124..2528633) 1 NC_002937.3 identified by match to protein family HMM PF00881; nitroreductase 2528633 2794363 DVU2422 Desulfovibrio vulgaris str. Hildenborough nitroreductase YP_011635.1 2528124 R 882 CDS YP_011636.1 46580828 2794364 2528735..2529214 1 NC_002937.3 identified by match to protein family HMM PF01638; transcriptional regulator 2529214 2794364 DVU2423 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_011636.1 2528735 D 882 CDS YP_011637.1 46580829 2794365 complement(2529640..2530554) 1 NC_002937.3 identified by similarity to OMNI:NTL01ATA0877; match to protein family HMM PF00892; hypothetical protein 2530554 2794365 DVU2424 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011637.1 2529640 R 882 CDS YP_011638.1 46580830 2794366 complement(2530647..2531534) 1 NC_002937.3 identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688; rarD protein 2531534 rarD 2794366 rarD Desulfovibrio vulgaris str. Hildenborough rarD protein YP_011638.1 2530647 R 882 CDS YP_011639.1 46580831 2794367 2531512..2531625 1 NC_002937.3 hypothetical protein 2531625 2794367 DVU2426 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011639.1 2531512 D 882 CDS YP_011640.1 46580832 2794368 complement(2531790..2532431) 1 NC_002937.3 hypothetical protein 2532431 2794368 DVU2427 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011640.1 2531790 R 882 CDS YP_011641.1 46580833 2795419 complement(2532467..2532925) 1 NC_002937.3 lipoprotein 2532925 2795419 DVU2428 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011641.1 2532467 R 882 CDS YP_011642.1 46580834 2795420 2533152..2533262 1 NC_002937.3 hypothetical protein 2533262 2795420 DVU2429 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011642.1 2533152 D 882 CDS YP_011643.1 46580835 2795421 complement(2533259..2533525) 1 NC_002937.3 identified by match to protein family HMM PF00076; RNA-binding protein 2533525 2795421 DVU2430 Desulfovibrio vulgaris str. Hildenborough RNA-binding protein YP_011643.1 2533259 R 882 CDS YP_011644.1 46580836 2795422 2533614..2533763 1 NC_002937.3 hypothetical protein 2533763 2795422 DVU2431 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011644.1 2533614 D 882 CDS YP_011645.1 46580837 2795423 2533787..2538028 1 NC_002937.3 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 2538028 2795423 DVU2432 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_011645.1 2533787 D 882 CDS YP_011646.1 46580838 2795424 complement(2538257..2538379) 1 NC_002937.3 hypothetical protein 2538379 2795424 DVU2433 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011646.1 2538257 R 882 CDS YP_011647.1 46580839 2795425 complement(2538367..2538774) 1 NC_002937.3 hypothetical protein 2538774 2795425 DVU2434 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011647.1 2538367 R 882 CDS YP_011648.1 46580840 2795426 2539054..2540088 1 NC_002937.3 identified by similarity to SP:P27841; match to protein family HMM PF01544; CorA family protein 2540088 2795426 DVU2435 Desulfovibrio vulgaris str. Hildenborough CorA family protein YP_011648.1 2539054 D 882 CDS YP_011649.1 46580841 2795427 2540394..2541026 1 NC_002937.3 identified by similarity to OMNI:AF1432; hypothetical protein 2541026 2795427 DVU2436 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011649.1 2540394 D 882 CDS YP_011650.1 46580842 2795428 complement(2541104..2542324) 1 NC_002937.3 identified by similarity to OMNI:NTL01TE1382; match to protein family HMM PF02687; ABC transporter permease 2542324 2795428 DVU2437 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_011650.1 2541104 R 882 CDS YP_011651.1 46580843 2795430 complement(2544684..2545919) 1 NC_002937.3 identified by similarity to SP:P75830; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2545919 2795430 DVU2439 Desulfovibrio vulgaris str. Hildenborough RND family efflux transporter MFP subunit YP_011651.1 2544684 R 882 CDS YP_011652.1 46580844 2795431 complement(2546391..2547314) 1 NC_002937.3 hypothetical protein 2547314 2795431 DVU2440 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011652.1 2546391 R 882 CDS YP_011653.1 46580845 2795432 2547504..2547914 1 NC_002937.3 identified by match to protein family HMM PF00011; HSP20 family protein 2547914 2795432 DVU2441 Desulfovibrio vulgaris str. Hildenborough HSP20 family protein YP_011653.1 2547504 D 882 CDS YP_011654.1 46580846 2795433 2547975..2548328 1 NC_002937.3 identified by match to protein family HMM PF00011; HSP20 family protein 2548328 2795433 DVU2442 Desulfovibrio vulgaris str. Hildenborough HSP20 family protein YP_011654.1 2547975 D 882 CDS YP_011655.1 46580847 2796620 complement(2548554..2549180) 1 NC_002937.3 identified by similarity to OMNI:NTL01PM1881; hypothetical protein 2549180 2796620 DVU2443 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011655.1 2548554 R 882 CDS YP_011656.1 46580848 2796621 complement(2549361..2550254) 1 NC_002937.3 identified by similarity to GP:1929918; match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 2550254 2796621 DVU2444 Desulfovibrio vulgaris str. Hildenborough flagellin YP_011656.1 2549361 R 882 CDS YP_011657.1 46580849 2796622 complement(2550227..2550352) 1 NC_002937.3 hypothetical protein 2550352 2796622 DVU2445 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011657.1 2550227 R 882 CDS YP_011658.1 46580850 2796623 2550513..2551436 1 NC_002937.3 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2551436 panB 2796623 panB Desulfovibrio vulgaris str. Hildenborough 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_011658.1 2550513 D 882 CDS YP_011659.1 46580851 2796624 complement(2551555..2552130) 1 NC_002937.3 hypothetical protein 2552130 2796624 DVU2447 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011659.1 2551555 R 882 CDS YP_011660.1 46580852 2796625 2552303..2553154 1 NC_002937.3 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2553154 panC 2796625 panC Desulfovibrio vulgaris str. Hildenborough pantoate--beta-alanine ligase YP_011660.1 2552303 D 882 CDS YP_011661.1 46580853 2796626 2553206..2554381 1 NC_002937.3 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2554381 metK 2796626 metK Desulfovibrio vulgaris str. Hildenborough S-adenosylmethionine synthetase YP_011661.1 2553206 D 882 CDS YP_011662.1 46580854 2796627 2554552..2554758 1 NC_002937.3 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A 2554758 tatA 2796627 tatA Desulfovibrio vulgaris str. Hildenborough twin arginine translocase A YP_011662.1 2554552 D 882 CDS YP_011663.1 46580855 2796628 complement(2555055..2556767) 1 NC_002937.3 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 2556767 2796628 DVU2451 Desulfovibrio vulgaris str. Hildenborough L-lactate permease YP_011663.1 2555055 R 882 CDS YP_011664.1 46580856 2796629 2556895..2557044 1 NC_002937.3 hypothetical protein 2557044 2796629 DVU2452 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011664.1 2556895 D 882 CDS YP_011665.1 46580857 2796630 complement(2557376..2557474) 1 NC_002937.3 hypothetical protein 2557474 2796630 DVU2453 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011665.1 2557376 R 882 CDS YP_011666.1 46580858 2796631 complement(2557471..2557740) 1 NC_002937.3 hypothetical protein 2557740 2796631 DVU2454 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011666.1 2557471 R 882 CDS YP_011667.1 46580859 2796632 2557897..2558847 1 NC_002937.3 identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 2558847 2796632 DVU2455 Desulfovibrio vulgaris str. Hildenborough NAD-dependent epimerase/dehydratase YP_011667.1 2557897 D 882 CDS YP_011668.1 46580860 2795320 2564303..2564542 1 NC_002937.3 hypothetical protein 2564542 2795320 DVU2456 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011668.1 2564303 D 882 CDS YP_011669.1 46580861 2795321 2564532..2564744 1 NC_002937.3 hypothetical protein 2564744 2795321 DVU2457 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011669.1 2564532 D 882 CDS YP_011671.2 304569723 2795323 2564868..2565482 1 NC_002937.3 hypothetical protein 2565482 2795323 DVU2459 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011671.2 2564868 D 882 CDS YP_011672.1 46580864 2795324 2565584..2566177 1 NC_002937.3 hypothetical protein 2566177 2795324 DVU2460 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011672.1 2565584 D 882 CDS YP_011673.1 46580865 2795325 2566189..2567208 1 NC_002937.3 identified by similarity to SP:P42062; match to protein family HMM PF00528; oligopeptide ABC transporter permease 2567208 2795325 DVU2461 Desulfovibrio vulgaris str. Hildenborough oligopeptide ABC transporter permease YP_011673.1 2566189 D 882 CDS YP_011674.1 46580866 2795326 2567205..2568107 1 NC_002937.3 identified by similarity to SP:P42063; match to protein family HMM PF00528; oligopeptide ABC transporter permease 2568107 2795326 DVU2462 Desulfovibrio vulgaris str. Hildenborough oligopeptide ABC transporter permease YP_011674.1 2567205 D 882 CDS YP_011675.1 46580867 2795327 2568549..2570168 1 NC_002937.3 identified by similarity to SP:P17894; DNA repair protein RecN 2570168 recN 2795327 recN Desulfovibrio vulgaris str. Hildenborough DNA repair protein RecN YP_011675.1 2568549 D 882 CDS YP_011676.1 46580868 2795328 2570171..2571754 1 NC_002937.3 hypothetical protein 2571754 2795328 DVU2464 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011676.1 2570171 D 882 CDS YP_011677.1 46580869 2795329 complement(2571741..2571890) 1 NC_002937.3 hypothetical protein 2571890 2795329 DVU2465 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011677.1 2571741 R 882 CDS YP_011678.1 46580870 2795330 2572078..2572947 1 NC_002937.3 flocculin repeat-containing protein 2572947 2795330 DVU2466 Desulfovibrio vulgaris str. Hildenborough flocculin repeat-containing protein YP_011678.1 2572078 D 882 CDS YP_011679.1 46580871 2795649 complement(2573308..2575968) 1 NC_002937.3 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 2575968 rnr 2795649 rnr Desulfovibrio vulgaris str. Hildenborough ribonuclease R YP_011679.1 2573308 R 882 CDS YP_011680.1 46580872 2795650 complement(2575998..2577062) 1 NC_002937.3 identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase 2577062 lpxK 2795650 lpxK Desulfovibrio vulgaris str. Hildenborough tetraacyldisaccharide 4'-kinase YP_011680.1 2575998 R 882 CDS YP_011681.1 46580873 2795651 2577128..2577232 1 NC_002937.3 hypothetical protein 2577232 2795651 DVU2469 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011681.1 2577128 D 882 CDS YP_011682.1 46580874 2795652 complement(2577229..2577930) 1 NC_002937.3 identified by similarity to SP:P75768; match to protein family HMM PF01027; membrane protein 2577930 2795652 DVU2470 Desulfovibrio vulgaris str. Hildenborough membrane protein YP_011682.1 2577229 R 882 CDS YP_011683.1 46580875 2795653 2578425..2579723 1 NC_002937.3 selenoprotein; identified by match to protein family HMM PF00037; match to protein family HMM PF02754; oxidoreductase, selenocysteine-containing 2579723 2795653 DVU2471 Desulfovibrio vulgaris str. Hildenborough oxidoreductase, selenocysteine-containing YP_011683.1 2578425 D 882 CDS YP_011684.1 46580876 2795654 2580029..2582368 1 NC_002937.3 identified by similarity to OMNI:NTL01TE2269; match to protein family HMM PF03065; hypothetical protein 2582368 2795654 DVU2472 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011684.1 2580029 D 882 CDS YP_011685.1 46580877 2795655 complement(2582514..2582657) 1 NC_002937.3 hypothetical protein 2582657 2795655 DVU2473 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011685.1 2582514 R 882 CDS YP_011686.1 46580878 2795656 complement(2582665..2583147) 1 NC_002937.3 hypothetical protein 2583147 2795656 DVU2474 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011686.1 2582665 R 882 CDS YP_011687.1 46580879 2795657 2583408..2584250 1 NC_002937.3 identified by match to protein family HMM PF00175; ferredoxin-NADP(+) reductase subunit alpha 2584250 2795657 DVU2475 Desulfovibrio vulgaris str. Hildenborough ferredoxin-NADP(+) reductase subunit alpha YP_011687.1 2583408 D 882 CDS YP_011688.1 46580880 2795658 2584243..2585673 1 NC_002937.3 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2585673 gltA 2795658 gltA Desulfovibrio vulgaris str. Hildenborough oxidoreductase YP_011688.1 2584243 D 882 CDS YP_011689.1 46580881 2795659 2585915..2586727 1 NC_002937.3 identified by similarity to SP:P46338; match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 2586727 pstS 2795659 pstS Desulfovibrio vulgaris str. Hildenborough phosphate ABC transporter substrate-binding protein YP_011689.1 2585915 D 882 CDS YP_011690.1 46580882 2795660 2586813..2587700 1 NC_002937.3 identified by similarity to SP:P46339; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 2587700 pstC 2795660 pstC Desulfovibrio vulgaris str. Hildenborough phosphate ABC transporter permease YP_011690.1 2586813 D 882 CDS YP_011691.1 46580883 2795661 2587787..2588716 1 NC_002937.3 identified by similarity to GP:1369911; match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 2588716 2795661 DVU2479 Desulfovibrio vulgaris str. Hildenborough phosphate ABC transporter permease YP_011691.1 2587787 D 882 CDS YP_011692.1 46580884 2795662 2588902..2589051 1 NC_002937.3 hypothetical protein 2589051 2795662 DVU2480 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011692.1 2588902 D 882 CDS YP_011693.1 46580885 2795663 complement(2589171..2589953) 1 NC_002937.3 identified by similarity to SP:P32175; formate dehydrogenase subunit beta 2589953 2795663 DVU2481 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase subunit beta YP_011693.1 2589171 R 882 CDS YP_011694.1 46580886 2795450 complement(2590064..2593075) 1 NC_002937.3 selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase subunit alpha 2593075 fdnG-2 2795450 fdnG-2 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase subunit alpha YP_011694.1 2590064 R 882 CDS YP_011695.1 46580887 2795451 complement(2593092..2594837) 1 NC_002937.3 identified by similarity to SP:P00135; match to protein family HMM PF02085; cytochrome c family protein 2594837 2795451 DVU2483 Desulfovibrio vulgaris str. Hildenborough cytochrome c family protein YP_011695.1 2593092 R 882 CDS YP_011696.1 46580888 2795452 complement(2594864..2596156) 1 NC_002937.3 identified by match to protein family HMM PF00034; cytochrome c family protein 2596156 2795452 DVU2484 Desulfovibrio vulgaris str. Hildenborough cytochrome c family protein YP_011696.1 2594864 R 882 CDS YP_011697.1 46580889 2795453 complement(2596160..2597224) 1 NC_002937.3 hypothetical protein 2597224 2795453 DVU2485 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011697.1 2596160 R 882 CDS YP_011698.1 46580890 2795454 complement(2597619..2598164) 1 NC_002937.3 identified by match to protein family HMM PF00583; acetyltransferase 2598164 2795454 DVU2486 Desulfovibrio vulgaris str. Hildenborough acetyltransferase YP_011698.1 2597619 R 882 CDS YP_011699.1 46580891 2795455 complement(2598213..2599400) 1 NC_002937.3 hypothetical protein 2599400 2795455 DVU2487 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011699.1 2598213 R 882 CDS YP_011700.1 46580892 2795456 2599382..2599501 1 NC_002937.3 hypothetical protein 2599501 2795456 DVU2488 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011700.1 2599382 D 882 CDS YP_011701.1 46580893 2795457 2599678..2600436 1 NC_002937.3 hypothetical protein 2600436 2795457 DVU2489 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011701.1 2599678 D 882 CDS YP_011702.1 46580894 2795458 2601007..2601831 1 NC_002937.3 identified by similarity to SP:O34411; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphatase 2601831 2795458 DVU2490 Desulfovibrio vulgaris str. Hildenborough histidinol phosphatase YP_011702.1 2601007 D 882 CDS YP_011703.1 46580895 2795459 2601837..2603735 1 NC_002937.3 identified by similarity to SP:P31060; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2603735 2795459 DVU2491 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_011703.1 2601837 D 882 CDS YP_011704.1 46580896 2795460 2603932..2604747 1 NC_002937.3 identified by match to protein family HMM PF00697; N-(5'-phosphoribosyl)anthranilate isomerase 2604747 trpF-2 2795460 trpF-2 Desulfovibrio vulgaris str. Hildenborough N-(5'-phosphoribosyl)anthranilate isomerase YP_011704.1 2603932 D 882 CDS YP_011705.1 46580897 2795461 2604855..2606243 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 2606243 2795461 DVU2493 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_011705.1 2604855 D 882 CDS YP_011706.1 46580898 2795462 2606430..2607290 1 NC_002937.3 identified by match to protein family HMM PF01435; M48 family peptidase 2607290 2795462 DVU2494 Desulfovibrio vulgaris str. Hildenborough M48 family peptidase YP_011706.1 2606430 D 882 CDS YP_011707.1 46580899 2795463 2607365..2607898 1 NC_002937.3 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase 2607898 2795463 DVU2495 Desulfovibrio vulgaris str. Hildenborough thioesterase YP_011707.1 2607365 D 882 CDS YP_011708.1 46580900 2795464 2607928..2608380 1 NC_002937.3 lipoprotein 2608380 2795464 DVU2496 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011708.1 2607928 D 882 CDS YP_011709.1 46580901 2795465 complement(2608616..2609350) 1 NC_002937.3 lipoprotein 2609350 2795465 DVU2497 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011709.1 2608616 R 882 CDS YP_011710.1 46580902 2795466 complement(2609375..2609668) 1 NC_002937.3 hypothetical protein 2609668 2795466 DVU2498 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011710.1 2609375 R 882 CDS YP_011711.1 46580903 2795467 complement(2609897..2611246) 1 NC_002937.3 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2611246 ftsZ 2795467 ftsZ Desulfovibrio vulgaris str. Hildenborough cell division protein FtsZ YP_011711.1 2609897 R 882 CDS YP_011712.1 46580904 2795628 complement(2611296..2612522) 1 NC_002937.3 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 2612522 ftsA 2795628 ftsA Desulfovibrio vulgaris str. Hildenborough cell division protein FtsA YP_011712.1 2611296 R 882 CDS YP_011713.1 46580905 2795629 complement(2612553..2613389) 1 NC_002937.3 identified by match to protein family HMM PF03799; cell division protein FtsQ 2613389 2795629 DVU2501 Desulfovibrio vulgaris str. Hildenborough cell division protein FtsQ YP_011713.1 2612553 R 882 CDS YP_011714.1 46580906 2795630 complement(2613380..2614270) 1 NC_002937.3 identified by match to protein family HMM PF02873; match to protein family HMM TIGR00179; UDP-N-acetylenolpyruvoylglucosamine reductase 2614270 murB 2795630 murB Desulfovibrio vulgaris str. Hildenborough UDP-N-acetylenolpyruvoylglucosamine reductase YP_011714.1 2613380 R 882 CDS YP_011715.1 46580907 2795631 complement(2614272..2615636) 1 NC_002937.3 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2615636 murC 2795631 murC Desulfovibrio vulgaris str. Hildenborough UDP-N-acetylmuramate--L-alanine ligase YP_011715.1 2614272 R 882 CDS YP_011716.1 46580908 2795632 complement(2615647..2616744) 1 NC_002937.3 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 2616744 murG 2795632 murG Desulfovibrio vulgaris str. Hildenborough UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_011716.1 2615647 R 882 CDS YP_011717.1 46580909 2795633 complement(2616748..2617881) 1 NC_002937.3 identified by match to protein family HMM PF01098; cell cycle protein FtsW 2617881 2795633 DVU2505 Desulfovibrio vulgaris str. Hildenborough cell cycle protein FtsW YP_011717.1 2616748 R 882 CDS YP_011718.1 46580910 2795634 complement(2617887..2619188) 1 NC_002937.3 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087; UDP-N-acetylmuramoylalanine--D-glutamate ligase 2619188 murD 2795634 murD Desulfovibrio vulgaris str. Hildenborough UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_011718.1 2617887 R 882 CDS YP_011719.1 46580911 2795635 complement(2619204..2620280) 1 NC_002937.3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2620280 mraY 2795635 mraY Desulfovibrio vulgaris str. Hildenborough phospho-N-acetylmuramoyl-pentapeptide- transferase YP_011719.1 2619204 R 882 CDS YP_011720.1 46580912 2795636 complement(2620270..2621706) 1 NC_002937.3 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 2621706 murF 2795636 murF Desulfovibrio vulgaris str. Hildenborough UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_011720.1 2620270 R 882 CDS YP_011721.1 46580913 2795637 complement(2621697..2623157) 1 NC_002937.3 identified by similarity to GP:12007716; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2623157 murE 2795637 murE Desulfovibrio vulgaris str. Hildenborough UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_011721.1 2621697 R 882 CDS YP_011722.1 46580914 2795638 complement(2623154..2625226) 1 NC_002937.3 identified by similarity to SP:P11882; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2625226 2795638 DVU2510 Desulfovibrio vulgaris str. Hildenborough penicillin-binding protein YP_011722.1 2623154 R 882 CDS YP_011723.1 46580915 2795639 complement(2625241..2625528) 1 NC_002937.3 hypothetical protein 2625528 2795639 DVU2511 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011723.1 2625241 R 882 CDS YP_011724.1 46580916 2795640 complement(2625531..2626502) 1 NC_002937.3 identified by similarity to SP:Q97H81; match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 2626502 mraW 2795640 mraW Desulfovibrio vulgaris str. Hildenborough S-adenosyl-methyltransferase MraW YP_011724.1 2625531 R 882 CDS YP_011725.1 46580917 2795641 complement(2626516..2626965) 1 NC_002937.3 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 2626965 mraZ 2795641 mraZ Desulfovibrio vulgaris str. Hildenborough cell division protein MraZ YP_011725.1 2626516 R 882 CDS YP_011726.1 46580918 2795604 2627119..2628528 1 NC_002937.3 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 2628528 pyk 2795604 pyk Desulfovibrio vulgaris str. Hildenborough pyruvate kinase YP_011726.1 2627119 D 882 CDS YP_011727.1 46580919 2795605 2628531..2629586 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 2629586 2795605 DVU2515 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_011727.1 2628531 D 882 CDS YP_011728.1 46580920 2795606 complement(2629806..2630291) 1 NC_002937.3 identified by match to protein family HMM PF00571; hypothetical protein 2630291 2795606 DVU2516 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011728.1 2629806 R 882 CDS YP_011729.1 46580921 2795607 complement(2630653..2631894) 1 NC_002937.3 identified by similarity to OMNI:NTL01HP00646; hypothetical protein 2631894 2795607 DVU2517 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011729.1 2630653 R 882 CDS YP_011730.1 46580922 2795608 2632092..2632526 1 NC_002937.3 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2632526 rplM 2795608 rplM Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L13 YP_011730.1 2632092 D 882 CDS YP_011731.1 46580923 2795609 2632545..2632937 1 NC_002937.3 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2632937 rpsI 2795609 rpsI Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S9 YP_011731.1 2632545 D 882 CDS YP_011732.1 46580924 2795610 complement(2632934..2633344) 1 NC_002937.3 hypothetical protein 2633344 2795610 DVU2520 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011732.1 2632934 R 882 CDS YP_011733.1 46580925 2795611 2633489..2634031 1 NC_002937.3 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 2634031 aroK 2795611 aroK Desulfovibrio vulgaris str. Hildenborough shikimate kinase YP_011733.1 2633489 D 882 CDS YP_011734.1 46580926 2795612 2634024..2634626 1 NC_002937.3 hypothetical protein 2634626 2795612 DVU2522 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011734.1 2634024 D 882 CDS YP_011735.1 46580927 2795613 2634656..2635132 1 NC_002937.3 lipoprotein 2635132 2795613 DVU2523 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011735.1 2634656 D 882 CDS YP_011736.1 46580928 2795614 2635568..2636065 1 NC_002937.3 identified by match to protein family HMM PF02085; cytochrome c3 2636065 2795614 DVU2524 Desulfovibrio vulgaris str. Hildenborough cytochrome c3 YP_011736.1 2635568 D 882 CDS YP_011737.1 46580929 2795615 2636122..2637036 1 NC_002937.3 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; periplasmic [NiFe] hydrogenase small subunit, isozyme 2 2637036 hynB-2 2795615 hynB-2 Desulfovibrio vulgaris str. Hildenborough periplasmic [NiFe] hydrogenase small subunit, isozyme 2 YP_011737.1 2636122 D 882 CDS YP_011738.1 46580930 2795616 2637049..2638698 1 NC_002937.3 identified by similarity to SP:P21852; match to protein family HMM PF00374; periplasmic [NiFe] hydrogenase large subunit, isozyme 2 2638698 hynA-2 2795616 hynA-2 Desulfovibrio vulgaris str. Hildenborough periplasmic [NiFe] hydrogenase large subunit, isozyme 2 YP_011738.1 2637049 D 882 CDS YP_011739.1 46580931 2795617 complement(2638841..2639239) 1 NC_002937.3 identified by similarity to SP:P55323; transcriptional regulator 2639239 2795617 DVU2527 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_011739.1 2638841 R 882 CDS YP_011740.1 46580932 2795618 complement(2639314..2639511) 1 NC_002937.3 hypothetical protein 2639511 2795618 DVU2528 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011740.1 2639314 R 882 CDS YP_011741.1 46580933 2795619 complement(2639592..2640773) 1 NC_002937.3 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2640773 pgk 2795619 pgk Desulfovibrio vulgaris str. Hildenborough phosphoglycerate kinase YP_011741.1 2639592 R 882 CDS YP_011742.1 46580934 2795716 complement(2640910..2642904) 1 NC_002937.3 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2642904 tkt 2795716 tkt Desulfovibrio vulgaris str. Hildenborough transketolase YP_011742.1 2640910 R 882 CDS YP_011743.1 46580935 2795717 complement(2642995..2643663) 1 NC_002937.3 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 2643663 rpe 2795717 rpe Desulfovibrio vulgaris str. Hildenborough ribulose-phosphate 3-epimerase YP_011743.1 2642995 R 882 CDS YP_011744.1 46580936 2795718 complement(2643711..2644094) 1 NC_002937.3 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2644094 2795718 DVU2532 Desulfovibrio vulgaris str. Hildenborough MerR family transcriptional regulator YP_011744.1 2643711 R 882 CDS YP_011745.1 46580937 2795719 complement(2644119..2646515) 1 NC_002937.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2646515 pheT 2795719 pheT Desulfovibrio vulgaris str. Hildenborough phenylalanyl-tRNA synthetase subunit beta YP_011745.1 2644119 R 882 CDS YP_011746.1 46580938 2795720 complement(2646695..2647732) 1 NC_002937.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2647732 pheS 2795720 pheS Desulfovibrio vulgaris str. Hildenborough phenylalanyl-tRNA synthetase subunit alpha YP_011746.1 2646695 R 882 CDS YP_011747.1 46580939 2795721 complement(2647904..2648257) 1 NC_002937.3 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2648257 rplT 2795721 rplT Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L20 YP_011747.1 2647904 R 882 CDS YP_011748.1 46580940 2795722 complement(2648340..2648537) 1 NC_002937.3 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 2648537 rpmI 2795722 rpmI Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L35 YP_011748.1 2648340 R 882 CDS YP_011749.1 46580941 2795723 complement(2648707..2649237) 1 NC_002937.3 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2649237 infC 2795723 infC Desulfovibrio vulgaris str. Hildenborough translation initiation factor IF-3 YP_011749.1 2648707 R 882 CDS YP_011750.1 46580942 2795724 complement(2649245..2651179) 1 NC_002937.3 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2651179 thrS 2795724 thrS Desulfovibrio vulgaris str. Hildenborough threonyl-tRNA synthetase YP_011750.1 2649245 R 882 CDS YP_011751.1 46580943 2795726 complement(2651364..2651486) 1 NC_002937.3 hypothetical protein 2651486 2795726 DVU2539 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011751.1 2651364 R 882 CDS YP_011752.1 46580944 2795727 complement(2651492..2652634) 1 NC_002937.3 identified by similarity to GP:38802; match to protein family HMM PF06050; 2-hydroxyglutaryl-CoA dehydratase subunit D 2652634 2795727 DVU2540 Desulfovibrio vulgaris str. Hildenborough 2-hydroxyglutaryl-CoA dehydratase subunit D YP_011752.1 2651492 R 882 CDS YP_011753.1 46580945 2795728 complement(2652642..2653451) 1 NC_002937.3 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 2653451 2795728 DVU2541 Desulfovibrio vulgaris str. Hildenborough CoA-substrate-specific enzyme activase YP_011753.1 2652642 R 882 CDS YP_011754.1 46580946 2795729 2653647..2653772 1 NC_002937.3 hypothetical protein 2653772 2795729 DVU2542 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011754.1 2653647 D 882 CDS YP_011755.3 304569724 2795730 2653864..2655564 1 NC_002937.3 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2655564 2795730 DVU2543 Desulfovibrio vulgaris str. Hildenborough hydroxylamine reductase YP_011755.3 2653864 D 882 CDS YP_011756.1 46580948 2796118 2655623..2656438 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 2656438 2796118 DVU2544 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_011756.1 2655623 D 882 CDS YP_011757.1 46580949 2796119 2656906..2658066 1 NC_002937.3 identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 2658066 2796119 DVU2545 Desulfovibrio vulgaris str. Hildenborough iron-containing alcohol dehydrogenase YP_011757.1 2656906 D 882 CDS YP_011758.2 304569725 2796120 2658050..2659672 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2659672 2796120 DVU2546 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_011758.2 2658050 D 882 CDS YP_011759.1 46580951 2796121 complement(2659978..2660664) 1 NC_002937.3 identified by match to protein family HMM PF00027; transcriptional regulator 2660664 2796121 DVU2547 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_011759.1 2659978 R 882 CDS YP_011760.1 46580952 2796122 complement(2660668..2661297) 1 NC_002937.3 identified by similarity to SP:P41407; match to protein family HMM PF02525; ACP phosphodiesterase 2661297 acpD 2796122 acpD Desulfovibrio vulgaris str. Hildenborough ACP phosphodiesterase YP_011760.1 2660668 R 882 CDS YP_011761.1 46580953 2796123 2661552..2661827 1 NC_002937.3 hypothetical protein 2661827 2796123 DVU2549 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011761.1 2661552 D 882 CDS YP_011762.1 46580954 2796124 2661932..2662099 1 NC_002937.3 hypothetical protein 2662099 2796124 DVU2550 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011762.1 2661932 D 882 CDS YP_011763.2 304569726 2796125 complement(2662087..2663322) 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 2663322 2796125 DVU2551 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_011763.2 2662087 R 882 CDS YP_011764.1 46580956 2796126 complement(2663659..2665050) 1 NC_002937.3 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2665050 gltX 2796126 gltX Desulfovibrio vulgaris str. Hildenborough glutamyl-tRNA synthetase YP_011764.1 2663659 R 882 CDS YP_011765.1 46580957 2796127 complement(2665224..2665469) 1 NC_002937.3 identified by match to protein family HMM PF01106; NifU family protein 2665469 2796127 DVU2553 Desulfovibrio vulgaris str. Hildenborough NifU family protein YP_011765.1 2665224 R 882 CDS YP_011766.1 46580958 2796128 complement(2665572..2666456) 1 NC_002937.3 identified by similarity to OMNI:NTL01FN0863; hypothetical protein 2666456 2796128 DVU2554 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011766.1 2665572 R 882 CDS YP_011767.1 46580959 2796129 complement(2666443..2667864) 1 NC_002937.3 identified by similarity to OMNI:NTL01RSA1213; match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2667864 2796129 DVU2555 Desulfovibrio vulgaris str. Hildenborough MATE efflux family protein YP_011767.1 2666443 R 882 CDS YP_011768.1 46580960 2796130 2668011..2668379 1 NC_002937.3 hypothetical protein 2668379 2796130 DVU2556 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011768.1 2668011 D 882 CDS YP_011769.1 46580961 2796131 complement(2668667..2669659) 1 NC_002937.3 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121; birA bifunctional protein 2669659 birA 2796131 birA Desulfovibrio vulgaris str. Hildenborough birA bifunctional protein YP_011769.1 2668667 R 882 CDS YP_011770.1 46580962 2796132 2669895..2670827 1 NC_002937.3 identified by similarity to SP:P53557; match to protein family HMM PF04055; match to protein family HMM TIGR00433; biotin synthase 2670827 bioB 2796132 bioB Desulfovibrio vulgaris str. Hildenborough biotin synthase YP_011770.1 2669895 D 882 CDS YP_011771.1 46580963 2796133 2670824..2672452 1 NC_002937.3 identified by similarity to SP:P53555; match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine--8-amino-7-oxononanoate aminotransferase 2672452 bioA 2796133 bioA Desulfovibrio vulgaris str. Hildenborough adenosylmethionine--8-amino-7-oxononanoate aminotransferase YP_011771.1 2670824 D 882 CDS YP_011772.1 46580964 2796134 2672449..2672835 1 NC_002937.3 identified by similarity to SP:O84537; hypothetical protein 2672835 2796134 DVU2560 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011772.1 2672449 D 882 CDS YP_011773.1 46580965 2796254 2672832..2673860 1 NC_002937.3 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2673860 2796254 DVU2561 Desulfovibrio vulgaris str. Hildenborough short chain dehydrogenase/reductase oxidoreductase YP_011773.1 2672832 D 882 CDS YP_011774.1 46580966 2796255 2673960..2674367 1 NC_002937.3 identified by similarity to SP:P20804; acyl carrier protein 2674367 2796255 DVU2562 Desulfovibrio vulgaris str. Hildenborough acyl carrier protein YP_011774.1 2673960 D 882 CDS YP_011775.1 46580967 2796256 2674645..2676093 1 NC_002937.3 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; beta-ketoacyl synthase 2676093 2796256 DVU2563 Desulfovibrio vulgaris str. Hildenborough beta-ketoacyl synthase YP_011775.1 2674645 D 882 CDS YP_011776.1 46580968 2796257 2676659..2677933 1 NC_002937.3 identified by similarity to SP:P22806; 8-amino-7-oxononanoate synthase 2677933 bioF 2796257 bioF Desulfovibrio vulgaris str. Hildenborough 8-amino-7-oxononanoate synthase YP_011776.1 2676659 D 882 CDS YP_011777.1 46580969 2796258 2677915..2678655 1 NC_002937.3 identified by match to protein family HMM PF01656; match to protein family HMM TIGR00347; dethiobiotin synthetase 2678655 bioD 2796258 bioD Desulfovibrio vulgaris str. Hildenborough dethiobiotin synthetase YP_011777.1 2677915 D 882 CDS YP_011778.1 46580970 2796259 complement(2678811..2680076) 1 NC_002937.3 identified by similarity to SP:P00861; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 2680076 lysA-2 2796259 lysA-2 Desulfovibrio vulgaris str. Hildenborough diaminopimelate decarboxylase YP_011778.1 2678811 R 882 CDS YP_011779.1 46580971 2796260 complement(2680076..2680780) 1 NC_002937.3 identified by similarity to OMNI:NTL01BS2704; match to protein family HMM PF01978; hypothetical protein 2680780 2796260 DVU2567 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011779.1 2680076 R 882 CDS YP_011780.1 46580972 2796261 2681380..2682618 1 NC_002937.3 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase 2682618 2796261 DVU2568 Desulfovibrio vulgaris str. Hildenborough M20/M25/M40 family peptidase YP_011780.1 2681380 D 882 CDS YP_011781.1 46580973 2796262 2682688..2683113 1 NC_002937.3 identified by similarity to SP:O52980; match to protein family HMM PF00254; peptidyl-prolyl cis-trans isomerase, FKBP-type 2683113 2796262 DVU2569 Desulfovibrio vulgaris str. Hildenborough peptidyl-prolyl cis-trans isomerase, FKBP-type YP_011781.1 2682688 D 882 CDS YP_011782.1 46580974 2796263 complement(2683213..2684865) 1 NC_002937.3 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 2684865 2796263 DVU2570 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_011782.1 2683213 R 882 CDS YP_011783.1 46580975 2796264 complement(2685003..2687201) 1 NC_002937.3 identified by match to protein family HMM PF02421; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 2687201 feoB 2796264 feoB Desulfovibrio vulgaris str. Hildenborough ferrous iron transport protein B YP_011783.1 2685003 R 882 CDS YP_011784.1 46580976 2796265 complement(2687198..2687458) 1 NC_002937.3 identified by similarity to OMNI:NTL02MA3391; match to protein family HMM PF04023; ferrous iron transport protein A 2687458 2796265 DVU2572 Desulfovibrio vulgaris str. Hildenborough ferrous iron transport protein A YP_011784.1 2687198 R 882 CDS YP_011785.1 46580977 2796266 complement(2687539..2687694) 1 NC_002937.3 hypothetical protein 2687694 2796266 DVU2573 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011785.1 2687539 R 882 CDS YP_011786.1 46580978 2796267 complement(2687726..2687962) 1 NC_002937.3 identified by similarity to GP:19887847; match to protein family HMM PF04023; ferrous ion transport protein 2687962 2796267 DVU2574 Desulfovibrio vulgaris str. Hildenborough ferrous ion transport protein YP_011786.1 2687726 R 882 CDS YP_011787.1 46580979 2796268 2688199..2689299 1 NC_002937.3 identified by match to protein family HMM PF01546; M20/M25/M40 family peptidase 2689299 2796268 DVU2575 Desulfovibrio vulgaris str. Hildenborough M20/M25/M40 family peptidase YP_011787.1 2688199 D 882 CDS YP_011788.1 46580980 2796269 2689296..2690261 1 NC_002937.3 identified by similarity to SP:P42064; match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 2690261 2796269 DVU2576 Desulfovibrio vulgaris str. Hildenborough oligopeptide ABC transporter ATP-binding protein YP_011788.1 2689296 D 882 CDS YP_011789.1 46580981 2794984 2690356..2691006 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 2691006 2794984 DVU2577 Desulfovibrio vulgaris str. Hildenborough LuxR family transcriptional regulator YP_011789.1 2690356 D 882 CDS YP_011790.1 46580982 2794986 2691333..2692022 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 2692022 2794986 DVU2578 Desulfovibrio vulgaris str. Hildenborough response regulator YP_011790.1 2691333 D 882 CDS YP_011791.1 46580983 2794992 2698344..2698973 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 2698973 2794992 DVU2579 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011791.1 2698344 D 882 CDS YP_011792.1 46580984 2794993 2699014..2703135 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF02518; response regulator 2703135 2794993 DVU2580 Desulfovibrio vulgaris str. Hildenborough response regulator YP_011792.1 2699014 D 882 CDS YP_011793.1 46580985 2794994 2703132..2703572 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 2703572 2794994 DVU2581 Desulfovibrio vulgaris str. Hildenborough response regulator YP_011793.1 2703132 D 882 CDS YP_011794.1 46580986 2794995 2703645..2704232 1 NC_002937.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2704232 2794995 DVU2582 Desulfovibrio vulgaris str. Hildenborough TetR family transcriptional regulator YP_011794.1 2703645 D 882 CDS YP_011795.1 46580987 2794996 2704465..2704971 1 NC_002937.3 lipoprotein 2704971 2794996 DVU2583 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011795.1 2704465 D 882 CDS YP_011796.1 46580988 2796362 2705433..2706365 1 NC_002937.3 identified by match to protein family HMM PF01544; CorA family protein 2706365 2796362 DVU2584 Desulfovibrio vulgaris str. Hildenborough CorA family protein YP_011796.1 2705433 D 882 CDS YP_011797.1 46580989 2796363 2706604..2708484 1 NC_002937.3 identified by similarity to OMNI:TM1428; match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2708484 2796363 DVU2585 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011797.1 2706604 D 882 CDS YP_011798.1 46580990 2796364 complement(2709005..2710687) 1 NC_002937.3 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 2710687 2796364 DVU2586 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_011798.1 2709005 R 882 CDS YP_011799.1 46580991 2796365 complement(2710879..2712264) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2712264 2796365 DVU2587 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_011799.1 2710879 R 882 CDS YP_011800.1 46580992 2796366 complement(2712233..2712913) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2712913 2796366 DVU2588 Desulfovibrio vulgaris str. Hildenborough DNA-binding response regulator YP_011800.1 2712233 R 882 CDS YP_011801.1 46580993 2796367 complement(2712971..2713096) 1 NC_002937.3 hypothetical protein 2713096 2796367 DVU2589 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011801.1 2712971 R 882 CDS YP_011802.1 46580994 2796368 2713242..2714807 1 NC_002937.3 sensory box protein 2714807 2796368 DVU2590 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_011802.1 2713242 D 882 CDS YP_011803.1 46580995 2796369 complement(2714953..2715462) 1 NC_002937.3 tail fiber assembly protein 2715462 2796369 DVU2591 Desulfovibrio vulgaris str. Hildenborough tail fiber assembly protein YP_011803.1 2714953 R 882 CDS YP_011804.1 46580996 2796370 complement(2715455..2715793) 1 NC_002937.3 hypothetical protein 2715793 2796370 DVU2592 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011804.1 2715455 R 882 CDS YP_011805.1 46580997 2796371 2716465..2716836 1 NC_002937.3 hypothetical protein 2716836 2796371 DVU2593 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011805.1 2716465 D 882 CDS YP_011806.1 46580998 2796372 2716907..2717218 1 NC_002937.3 hypothetical protein 2717218 2796372 DVU2594 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011806.1 2716907 D 882 CDS YP_011807.1 46580999 2796373 complement(2717383..2717958) 1 NC_002937.3 hypothetical protein 2717958 2796373 DVU2595 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011807.1 2717383 R 882 CDS YP_011808.1 46581000 2796374 complement(2717955..2718734) 1 NC_002937.3 hypothetical protein 2718734 2796374 DVU2596 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011808.1 2717955 R 882 CDS YP_011809.1 46581001 2796375 2718792..2718989 1 NC_002937.3 hypothetical protein 2718989 2796375 DVU2597 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011809.1 2718792 D 882 CDS YP_011810.1 46581002 2796376 complement(2720054..2720608) 1 NC_002937.3 hypothetical protein 2720608 2796376 DVU2598 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011810.1 2720054 R 882 CDS YP_011811.1 46581003 2796377 complement(2720598..2721041) 1 NC_002937.3 hypothetical protein 2721041 2796377 DVU2599 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011811.1 2720598 R 882 CDS YP_011812.1 46581004 2796378 complement(2721182..2721583) 1 NC_002937.3 hypothetical protein 2721583 2796378 DVU2600 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011812.1 2721182 R 882 CDS YP_003858623.1 304569761 9714842 complement(2721610..2722524) 1 NC_002937.3 hypothetical protein 2722524 9714842 DVU4020 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858623.1 2721610 R 882 CDS YP_011814.1 46581006 2793898 complement(2722536..2723219) 1 NC_002937.3 identified by similarity to OMNI:NTL02SC5552; hypothetical protein 2723219 2793898 DVU2602 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011814.1 2722536 R 882 CDS YP_011815.1 46581007 2793899 complement(2723281..2723688) 1 NC_002937.3 hypothetical protein 2723688 2793899 DVU2603 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011815.1 2723281 R 882 CDS YP_011816.1 46581008 2793900 complement(2723678..2725387) 1 NC_002937.3 identified by similarity to GP:13186164; hypothetical protein 2725387 2793900 DVU2604 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011816.1 2723678 R 882 CDS YP_011817.1 46581009 2793901 complement(2725387..2725821) 1 NC_002937.3 hypothetical protein 2725821 2793901 DVU2605 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011817.1 2725387 R 882 CDS YP_011818.1 46581010 2793902 2725862..2726161 1 NC_002937.3 hypothetical protein 2726161 2793902 DVU2606 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011818.1 2725862 D 882 CDS YP_011819.1 46581011 2793903 2726271..2726897 1 NC_002937.3 hypothetical protein 2726897 2793903 DVU2607 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011819.1 2726271 D 882 CDS YP_011820.1 46581012 2793904 2726913..2727758 1 NC_002937.3 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2727758 motA-3 2793904 motA-3 Desulfovibrio vulgaris str. Hildenborough flagellar motor protein MotA YP_011820.1 2726913 D 882 CDS YP_011821.1 46581013 2793905 2727785..2728516 1 NC_002937.3 identified by similarity to GP:4426946; match to protein family HMM PF00691; chemotaxis MotB protein 2728516 2793905 DVU2609 Desulfovibrio vulgaris str. Hildenborough chemotaxis MotB protein YP_011821.1 2727785 D 882 CDS YP_011822.1 46581014 2793906 complement(2728550..2729227) 1 NC_002937.3 hypothetical protein 2729227 2793906 DVU2610 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011822.1 2728550 R 882 CDS YP_011823.1 46581015 2793907 complement(2729301..2730860) 1 NC_002937.3 hypothetical protein 2730860 2793907 DVU2611 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011823.1 2729301 R 882 CDS YP_011824.1 46581016 2793908 2731396..2731785 1 NC_002937.3 identified by similarity to OMNI:NTL03PA02779; hypothetical protein 2731785 2793908 DVU2612 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011824.1 2731396 D 882 CDS YP_011825.1 46581017 2793909 2731832..2732398 1 NC_002937.3 hypothetical protein 2732398 2793909 DVU2613 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011825.1 2731832 D 882 CDS YP_011826.1 46581018 2793910 2732473..2733090 1 NC_002937.3 hypothetical protein 2733090 2793910 DVU2614 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011826.1 2732473 D 882 CDS YP_011827.1 46581019 2793911 2733693..2734541 1 NC_002937.3 identified by similarity to SP:P02911; match to protein family HMM PF00497; solute-binding family 1 protein 2734541 2793911 DVU2615 Desulfovibrio vulgaris str. Hildenborough solute-binding family 1 protein YP_011827.1 2733693 D 882 CDS YP_011828.1 46581020 2793912 2734559..2737561 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 2737561 2793912 DVU2616 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_011828.1 2734559 D 882 CDS YP_011829.1 46581021 2793913 2737933..2739153 1 NC_002937.3 identified by match to protein family HMM PF01699; sodium/calcium exchanger family protein 2739153 2793913 DVU2617 Desulfovibrio vulgaris str. Hildenborough sodium/calcium exchanger family protein YP_011829.1 2737933 D 882 CDS YP_011830.1 46581022 2793914 2739231..2739395 1 NC_002937.3 hypothetical protein 2739395 2793914 DVU2618 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011830.1 2739231 D 882 CDS YP_011831.1 46581023 2795236 2739486..2740214 1 NC_002937.3 identified by similarity to OMNI:NTL03CP2311; hypothetical protein 2740214 2795236 DVU2619 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011831.1 2739486 D 882 CDS YP_011832.1 46581024 2795237 2740315..2741475 1 NC_002937.3 identified by similarity to OMNI:CC3039; hypothetical protein 2741475 2795237 DVU2620 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011832.1 2740315 D 882 CDS YP_011833.1 46581025 2795238 2741758..2742570 1 NC_002937.3 hypothetical protein 2742570 2795238 DVU2621 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011833.1 2741758 D 882 CDS YP_011834.1 46581026 2795239 complement(2742580..2742768) 1 NC_002937.3 hypothetical protein 2742768 2795239 DVU2622 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011834.1 2742580 R 882 CDS YP_011835.1 46581027 2795240 2743066..2743413 1 NC_002937.3 hypothetical protein 2743413 2795240 DVU2623 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011835.1 2743066 D 882 CDS YP_011836.1 46581028 2795241 2743548..2744045 1 NC_002937.3 hypothetical protein 2744045 2795241 DVU2624 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011836.1 2743548 D 882 CDS YP_011837.1 46581029 2795242 complement(2744142..2744243) 1 NC_002937.3 hypothetical protein 2744243 2795242 DVU2625 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011837.1 2744142 R 882 CDS YP_011838.1 46581030 2795243 2744233..2744439 1 NC_002937.3 hypothetical protein 2744439 2795243 DVU2626 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011838.1 2744233 D 882 CDS YP_011839.1 46581031 2795244 complement(2744482..2744859) 1 NC_002937.3 hypothetical protein 2744859 2795244 DVU2627 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011839.1 2744482 R 882 CDS YP_011840.1 46581032 2795245 complement(2744871..2745449) 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 2745449 2795245 DVU2628 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011840.1 2744871 R 882 CDS YP_011841.1 46581033 2795246 2745487..2746038 1 NC_002937.3 hypothetical protein 2746038 2795246 DVU2629 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011841.1 2745487 D 882 CDS YP_011842.1 46581034 2795247 2746127..2747002 1 NC_002937.3 lipoprotein 2747002 2795247 DVU2630 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011842.1 2746127 D 882 CDS YP_011843.1 46581035 2795248 complement(2747566..2747937) 1 NC_002937.3 hypothetical protein 2747937 2795248 DVU2631 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011843.1 2747566 R 882 CDS YP_011844.1 46581036 2795249 2748064..2748300 1 NC_002937.3 hypothetical protein 2748300 2795249 DVU2632 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011844.1 2748064 D 882 CDS YP_011845.1 46581037 2795250 2748792..2749565 1 NC_002937.3 identified by similarity to SP:Q06553; match to protein family HMM PF00717; transcriptional regulator 2749565 2795250 DVU2633 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_011845.1 2748792 D 882 CDS YP_011846.1 46581038 2795251 2749602..2749853 1 NC_002937.3 hypothetical protein 2749853 2795251 DVU2634 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011846.1 2749602 D 882 CDS YP_011847.1 46581039 2795252 2750041..2751174 1 NC_002937.3 identified by similarity to SP:P25740; match to protein family HMM PF00534; glycosyl transferase family protein 2751174 2795252 DVU2635 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_011847.1 2750041 D 882 CDS YP_011848.1 46581040 2795253 complement(2751297..2752466) 1 NC_002937.3 hypothetical protein 2752466 2795253 DVU2636 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011848.1 2751297 R 882 CDS YP_011849.2 304569727 2795693 complement(2752529..2754037) 1 NC_002937.3 identified by match to protein family HMM PF00672; HAMP domain-containing protein 2754037 2795693 DVU2637 Desulfovibrio vulgaris str. Hildenborough HAMP domain-containing protein YP_011849.2 2752529 R 882 CDS YP_011850.1 46581042 2795694 complement(2754320..2755408) 1 NC_002937.3 hypothetical protein 2755408 2795694 DVU2638 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011850.1 2754320 R 882 CDS YP_011851.1 46581043 2795695 2755631..2755933 1 NC_002937.3 identified by similarity to GP:15025399; hypothetical protein 2755933 2795695 DVU2639 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011851.1 2755631 D 882 CDS YP_011852.1 46581044 2795696 2756286..2757026 1 NC_002937.3 hypothetical protein 2757026 2795696 DVU2640 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011852.1 2756286 D 882 CDS YP_011853.1 46581045 2795697 2757048..2757782 1 NC_002937.3 lipoprotein 2757782 2795697 DVU2641 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011853.1 2757048 D 882 CDS YP_011854.1 46581046 2795698 2757848..2758291 1 NC_002937.3 alanyl-tRNA synthetase 2758291 2795698 DVU2642 Desulfovibrio vulgaris str. Hildenborough alanyl-tRNA synthetase YP_011854.1 2757848 D 882 CDS YP_011855.1 46581047 2795699 2758472..2760385 1 NC_002937.3 molecular chaperone; heat shock protein 90 2760385 htpG 2795699 htpG Desulfovibrio vulgaris str. Hildenborough heat shock protein 90 YP_011855.1 2758472 D 882 CDS YP_011856.1 46581048 2795700 complement(2760784..2761455) 1 NC_002937.3 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2761455 2795700 DVU2644 Desulfovibrio vulgaris str. Hildenborough GntR family transcriptional regulator YP_011856.1 2760784 R 882 CDS YP_011857.1 46581049 2795701 complement(2761599..2762999) 1 NC_002937.3 identified by similarity to SP:P27611; Na+/H+ antiporter family protein 2762999 2795701 DVU2645 Desulfovibrio vulgaris str. Hildenborough Na+/H+ antiporter family protein YP_011857.1 2761599 R 882 CDS YP_011858.1 46581050 2795702 complement(2763062..2764060) 1 NC_002937.3 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2764060 2795702 DVU2646 Desulfovibrio vulgaris str. Hildenborough D-cysteine desulfhydrase YP_011858.1 2763062 R 882 CDS YP_011859.1 46581051 2795703 complement(2764110..2764499) 1 NC_002937.3 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; L-PSP family endoribonuclease 2764499 2795703 DVU2647 Desulfovibrio vulgaris str. Hildenborough L-PSP family endoribonuclease YP_011859.1 2764110 R 882 CDS YP_011860.1 46581052 2795704 2764569..2764895 1 NC_002937.3 hypothetical protein 2764895 2795704 DVU2648 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011860.1 2764569 D 882 CDS YP_011861.1 46581053 2795705 2764892..2765152 1 NC_002937.3 hypothetical protein 2765152 2795705 DVU2649 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011861.1 2764892 D 882 CDS YP_011862.1 46581054 2795706 complement(2765697..2766302) 1 NC_002937.3 hypothetical protein 2766302 2795706 DVU2650 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011862.1 2765697 R 882 CDS YP_011863.1 46581055 2795707 complement(2766455..2766631) 1 NC_002937.3 hypothetical protein 2766631 2795707 DVU2651 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011863.1 2766455 R 882 CDS YP_011864.1 46581056 2795708 complement(2766824..2767405) 1 NC_002937.3 hypothetical protein 2767405 2795708 DVU2652 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011864.1 2766824 R 882 CDS YP_011865.1 46581057 2795709 2767551..2767751 1 NC_002937.3 hypothetical protein 2767751 2795709 DVU2653 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011865.1 2767551 D 882 CDS YP_011866.1 46581058 2795710 2767848..2768105 1 NC_002937.3 hypothetical protein 2768105 2795710 DVU2654 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011866.1 2767848 D 882 CDS YP_011867.1 46581059 2796222 2768362..2769687 1 NC_002937.3 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 2769687 2796222 DVU2655 Desulfovibrio vulgaris str. Hildenborough D-alanyl-D-alanine carboxypeptidase YP_011867.1 2768362 D 882 CDS YP_011868.1 46581060 2796223 complement(2769777..2770001) 1 NC_002937.3 hypothetical protein 2770001 2796223 DVU2656 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011868.1 2769777 R 882 CDS YP_011869.1 46581061 2796224 complement(2770045..2770407) 1 NC_002937.3 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 2770407 2796224 DVU2657 Desulfovibrio vulgaris str. Hildenborough 6-pyruvoyl tetrahydrobiopterin synthase YP_011869.1 2770045 R 882 CDS YP_011870.1 46581062 2796225 complement(2770670..2771320) 1 NC_002937.3 hypothetical protein 2771320 2796225 DVU2658 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011870.1 2770670 R 882 CDS YP_011871.1 46581063 2796226 complement(2771317..2772045) 1 NC_002937.3 identified by match to protein family HMM TIGR00364; exsB protein 2772045 2796226 DVU2659 Desulfovibrio vulgaris str. Hildenborough exsB protein YP_011871.1 2771317 R 882 CDS YP_011872.1 46581064 2796227 complement(2772210..2772371) 1 NC_002937.3 hypothetical protein 2772371 2796227 DVU2660 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011872.1 2772210 R 882 CDS YP_011873.1 46581065 2796228 2772423..2773988 1 NC_002937.3 twin-arginine translocation pathway signal sequence domain-containing protein 2773988 2796228 DVU2661 Desulfovibrio vulgaris str. Hildenborough twin-arginine translocation pathway signal sequence domain-containing protein YP_011873.1 2772423 D 882 CDS YP_011874.1 46581066 2796229 2774135..2774899 1 NC_002937.3 identified by similarity to SP:P54952; hypothetical protein 2774899 2796229 DVU2662 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011874.1 2774135 D 882 CDS YP_011875.1 46581067 2796230 complement(2774924..2775400) 1 NC_002937.3 identified by similarity to GP:19886926; hypothetical protein 2775400 2796230 DVU2663 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011875.1 2774924 R 882 CDS YP_011876.1 46581068 2796231 complement(2775403..2776269) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA05367; match to protein family HMM PF00005; phosphate ABC transporter ATP-binding protein 2776269 2796231 DVU2664 Desulfovibrio vulgaris str. Hildenborough phosphate ABC transporter ATP-binding protein YP_011876.1 2775403 R 882 CDS YP_011877.1 46581069 2796232 complement(2776301..2777185) 1 NC_002937.3 identified by similarity to OMNI:NTL02MA0874; match to protein family HMM PF00528; phosphate ABC transporter permease 2777185 2796232 DVU2665 Desulfovibrio vulgaris str. Hildenborough phosphate ABC transporter permease YP_011877.1 2776301 R 882 CDS YP_011878.1 46581070 2796233 complement(2777221..2778096) 1 NC_002937.3 identified by similarity to OMNI:NTL01MT01690; match to protein family HMM PF00528; phosphate ABC transporter permease 2778096 2796233 DVU2666 Desulfovibrio vulgaris str. Hildenborough phosphate ABC transporter permease YP_011878.1 2777221 R 882 CDS YP_011879.1 46581071 2796234 complement(2778093..2778971) 1 NC_002937.3 identified by similarity to SP:P46338; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 2778971 2796234 DVU2667 Desulfovibrio vulgaris str. Hildenborough phosphate ABC transporter substrate-binding protein YP_011879.1 2778093 R 882 CDS YP_011880.1 46581072 2796235 2779417..2780784 1 NC_002937.3 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 2780784 glmU 2796235 glmU Desulfovibrio vulgaris str. Hildenborough bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_011880.1 2779417 D 882 CDS YP_011881.1 46581073 2796236 2780816..2781052 1 NC_002937.3 hypothetical protein 2781052 2796236 DVU2669 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011881.1 2780816 D 882 CDS YP_011882.1 46581074 2796237 2781072..2781335 1 NC_002937.3 hypothetical protein 2781335 2796237 DVU2670 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011882.1 2781072 D 882 CDS YP_011883.1 46581075 2796238 2781727..2783286 1 NC_002937.3 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 2783286 2796238 DVU2671 Desulfovibrio vulgaris str. Hildenborough phosphodiesterase YP_011883.1 2781727 D 882 CDS YP_011884.1 46581076 2796239 2783384..2784007 1 NC_002937.3 identified by similarity to SP:Q9RKM3; match to protein family HMM PF03458; hypothetical protein 2784007 2796239 DVU2672 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011884.1 2783384 D 882 CDS YP_011885.1 46581077 2795044 2784563..2785732 1 NC_002937.3 identified by similarity to SP:P13032; match to protein family HMM PF01266; anaerobic glycerol-3-phosphate dehydrogenase subunit A, truncation 2785732 2795044 DVU2673 Desulfovibrio vulgaris str. Hildenborough anaerobic glycerol-3-phosphate dehydrogenase subunit A, truncation YP_011885.1 2784563 D 882 CDS YP_011886.1 46581078 2795045 2785734..2786453 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2786453 2795045 DVU2674 Desulfovibrio vulgaris str. Hildenborough succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_011886.1 2785734 D 882 CDS YP_011887.1 46581079 2795046 complement(2786675..2787358) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 2787358 2795046 DVU2675 Desulfovibrio vulgaris str. Hildenborough LuxR family transcriptional regulator YP_011887.1 2786675 R 882 CDS YP_011888.1 46581080 2795047 2787609..2787875 1 NC_002937.3 hypothetical protein 2787875 2795047 DVU2676 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011888.1 2787609 D 882 CDS YP_011889.1 46581081 2795048 2788003..2789466 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 2789466 2795048 DVU2677 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase/response regulator YP_011889.1 2788003 D 882 CDS YP_011890.1 46581082 2795049 2789463..2790665 1 NC_002937.3 identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; RNA pseudouridine synthase 2790665 2795049 DVU2678 Desulfovibrio vulgaris str. Hildenborough RNA pseudouridine synthase YP_011890.1 2789463 D 882 CDS YP_011891.1 46581083 2795050 complement(2790679..2793696) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 2793696 2795050 DVU2679 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_011891.1 2790679 R 882 CDS YP_011892.1 46581084 2795051 2794035..2794481 1 NC_002937.3 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753; flavodoxin 2794481 2795051 DVU2680 Desulfovibrio vulgaris str. Hildenborough flavodoxin YP_011892.1 2794035 D 882 CDS YP_011893.1 46581085 2795052 complement(2794603..2794785) 1 NC_002937.3 hypothetical protein 2794785 2795052 DVU2681 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011893.1 2794603 R 882 CDS YP_011894.1 46581086 2795053 complement(2795218..2795859) 1 NC_002937.3 identified by similarity to GP:13446681; match to protein family HMM PF00597; DedA family protein 2795859 2795053 DVU2682 Desulfovibrio vulgaris str. Hildenborough DedA family protein YP_011894.1 2795218 R 882 CDS YP_011895.1 46581087 2795054 2796644..2798194 1 NC_002937.3 L-lactate permease 2798194 2795054 DVU2683 Desulfovibrio vulgaris str. Hildenborough L-lactate permease YP_011895.1 2796644 D 882 CDS YP_011896.1 46581088 2795055 complement(2798343..2799215) 1 NC_002937.3 hypothetical protein 2799215 2795055 DVU2684 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011896.1 2798343 R 882 CDS YP_011897.1 46581089 2795056 complement(2799302..2799535) 1 NC_002937.3 hypothetical protein 2799535 2795056 DVU2685 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011897.1 2799302 R 882 CDS YP_011898.1 46581090 2795057 complement(2799591..2800373) 1 NC_002937.3 identified by match to protein family HMM PF00717; S24 family peptidase 2800373 2795057 DVU2686 Desulfovibrio vulgaris str. Hildenborough S24 family peptidase YP_011898.1 2799591 R 882 CDS YP_011899.1 46581091 2795058 2800560..2801090 1 NC_002937.3 hypothetical protein 2801090 2795058 DVU2687 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011899.1 2800560 D 882 CDS YP_011900.1 46581092 2795059 2801478..2803520 1 NC_002937.3 identified by similarity to SP:P07636; match to protein family HMM PF00665; bacteriophage transposase A protein 2803520 2795059 DVU2688 Desulfovibrio vulgaris str. Hildenborough bacteriophage transposase A protein YP_011900.1 2801478 D 882 CDS YP_011901.1 46581093 2795060 2803529..2804314 1 NC_002937.3 identified by similarity to SP:P03763; bacteriophage DNA transposition B protein 2804314 2795060 DVU2689 Desulfovibrio vulgaris str. Hildenborough bacteriophage DNA transposition B protein YP_011901.1 2803529 D 882 CDS YP_011902.1 46581094 2793746 2804317..2804904 1 NC_002937.3 hypothetical protein 2804904 2793746 DVU2690 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011902.1 2804317 D 882 CDS YP_011903.1 46581095 2793747 2805178..2805711 1 NC_002937.3 hypothetical protein 2805711 2793747 DVU2691 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011903.1 2805178 D 882 CDS YP_011904.1 46581096 2793748 2805721..2805957 1 NC_002937.3 hypothetical protein 2805957 2793748 DVU2692 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011904.1 2805721 D 882 CDS YP_011905.1 46581097 2793749 2806043..2806282 1 NC_002937.3 hypothetical protein 2806282 2793749 DVU2693 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011905.1 2806043 D 882 CDS YP_011906.1 46581098 2793750 2806364..2806798 1 NC_002937.3 hypothetical protein 2806798 2793750 DVU2694 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011906.1 2806364 D 882 CDS YP_011907.1 46581099 2793751 2806807..2807223 1 NC_002937.3 hypothetical protein 2807223 2793751 DVU2695 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011907.1 2806807 D 882 CDS YP_011908.1 46581100 2793752 2807220..2807708 1 NC_002937.3 identified by similarity to OMNI:NMB1083; hypothetical protein 2807708 2793752 DVU2696 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011908.1 2807220 D 882 CDS YP_011909.1 46581101 2793753 2807721..2808059 1 NC_002937.3 hypothetical protein 2808059 2793753 DVU2697 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011909.1 2807721 D 882 CDS YP_011910.1 46581102 2793754 2808172..2808534 1 NC_002937.3 lipoprotein 2808534 2793754 DVU2698 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_011910.1 2808172 D 882 CDS YP_011911.1 46581103 2793755 2808534..2809181 1 NC_002937.3 identified by match to protein family HMM PF01464; transglycosylase 2809181 2793755 DVU2699 Desulfovibrio vulgaris str. Hildenborough transglycosylase YP_011911.1 2808534 D 882 CDS YP_011912.1 46581104 2793756 2809174..2809593 1 NC_002937.3 hypothetical protein 2809593 2793756 DVU2700 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011912.1 2809174 D 882 CDS YP_011913.1 46581105 2793757 2809622..2809840 1 NC_002937.3 hypothetical protein 2809840 2793757 DVU2701 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011913.1 2809622 D 882 CDS YP_011914.1 46581106 2793758 2809844..2810125 1 NC_002937.3 identified by similarity to OMNI:NTL01NM01121; hypothetical protein 2810125 2793758 DVU2702 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011914.1 2809844 D 882 CDS YP_011915.1 46581107 2793759 2810112..2810327 1 NC_002937.3 hypothetical protein 2810327 2793759 DVU2703 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011915.1 2810112 D 882 CDS YP_011916.1 46581108 2793760 2810329..2810847 1 NC_002937.3 identified by similarity to OMNI:NMB1092; hypothetical protein 2810847 2793760 DVU2704 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011916.1 2810329 D 882 CDS YP_011917.1 46581109 2793761 2810844..2812520 1 NC_002937.3 identified by match to protein family HMM TIGR01630; phage protein 2812520 2793761 DVU2705 Desulfovibrio vulgaris str. Hildenborough phage protein YP_011917.1 2810844 D 882 CDS YP_011918.1 46581110 2793762 2812507..2814225 1 NC_002937.3 identified by similarity to OMNI:NTL01NM01730; match to protein family HMM PF06074; hypothetical protein 2814225 2793762 DVU2706 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011918.1 2812507 D 882 CDS YP_011919.1 46581111 2793763 2814228..2815478 1 NC_002937.3 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; virion morphogenesis protein 2815478 2793763 DVU2707 Desulfovibrio vulgaris str. Hildenborough virion morphogenesis protein YP_011919.1 2814228 D 882 CDS YP_011920.1 46581112 2793764 2815643..2816131 1 NC_002937.3 identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; virion morphogenesis protein 2816131 2793764 DVU2708 Desulfovibrio vulgaris str. Hildenborough virion morphogenesis protein YP_011920.1 2815643 D 882 CDS YP_003858624.1 304569767 9714841 2816266..2816802 1 NC_002937.3 hypothetical protein 2816802 9714841 DVU4026 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858624.1 2816266 D 882 CDS YP_011922.1 46581114 2794000 2816859..2818019 1 NC_002937.3 identified by similarity to OMNI:NTL01NM01727; hypothetical protein 2818019 2794000 DVU2710 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011922.1 2816859 D 882 CDS YP_011923.1 46581115 2794001 2818020..2818949 1 NC_002937.3 identified by similarity to SP:Q9T1W1; major head subunit 2818949 2794001 DVU2711 Desulfovibrio vulgaris str. Hildenborough major head subunit YP_011923.1 2818020 D 882 CDS YP_011924.1 46581116 2794002 2818961..2819290 1 NC_002937.3 hypothetical protein 2819290 2794002 DVU2712 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011924.1 2818961 D 882 CDS YP_011925.1 46581117 2794003 2819290..2819721 1 NC_002937.3 hypothetical protein 2819721 2794003 DVU2713 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011925.1 2819290 D 882 CDS YP_011926.1 46581118 2794004 2819718..2820347 1 NC_002937.3 identified by similarity to GP:6900380; hypothetical protein 2820347 2794004 DVU2714 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011926.1 2819718 D 882 CDS YP_011927.1 46581119 2794005 2820350..2820535 1 NC_002937.3 identified by similarity to OMNI:NMB1103; hypothetical protein 2820535 2794005 DVU2715 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011927.1 2820350 D 882 CDS YP_011928.1 46581120 2794006 2820522..2821943 1 NC_002937.3 identified by similarity to SP:P79678; tail sheath protein 2821943 2794006 DVU2716 Desulfovibrio vulgaris str. Hildenborough tail sheath protein YP_011928.1 2820522 D 882 CDS YP_011929.1 46581121 2794007 2822022..2822849 1 NC_002937.3 hypothetical protein 2822849 2794007 DVU2717 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011929.1 2822022 D 882 CDS YP_011930.1 46581122 2794008 2822842..2822994 1 NC_002937.3 hypothetical protein 2822994 2794008 DVU2718 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011930.1 2822842 D 882 CDS YP_011931.1 46581123 2794009 2822985..2823359 1 NC_002937.3 identified by similarity to OMNI:NMB1105; hypothetical protein 2823359 2794009 DVU2719 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011931.1 2822985 D 882 CDS YP_011932.1 46581124 2794010 2823557..2823886 1 NC_002937.3 hypothetical protein 2823886 2794010 DVU2720 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011932.1 2823557 D 882 CDS YP_011933.1 46581125 2794011 2824045..2825985 1 NC_002937.3 TP901 family phage tail tape measure protein 2825985 2794011 DVU2721 Desulfovibrio vulgaris str. Hildenborough TP901 family phage tail tape measure protein YP_011933.1 2824045 D 882 CDS YP_011934.1 46581126 2794012 2826005..2827345 1 NC_002937.3 identified by similarity to OMNI:NTL01NM01712; hypothetical protein 2827345 2794012 DVU2722 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011934.1 2826005 D 882 CDS YP_011935.1 46581127 2794013 2827365..2828489 1 NC_002937.3 identified by similarity to SP:P08558; tail protein 2828489 2794013 DVU2723 Desulfovibrio vulgaris str. Hildenborough tail protein YP_011935.1 2827365 D 882 CDS YP_011936.1 46581128 2794014 2828486..2829112 1 NC_002937.3 identified by match to protein family HMM TIGR01644; phage baseplate assembly protein V 2829112 2794014 DVU2724 Desulfovibrio vulgaris str. Hildenborough phage baseplate assembly protein V YP_011936.1 2828486 D 882 CDS YP_011937.2 304569728 2794015 complement(2829051..2829500) 1 NC_002937.3 hypothetical protein 2829500 2794015 DVU2725 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011937.2 2829051 R 882 CDS YP_011939.1 46581131 2795928 2829573..2829929 1 NC_002937.3 identified by similarity to OMNI:NTL01NM01233; hypothetical protein 2829929 2795928 DVU2727 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011939.1 2829573 D 882 CDS YP_011940.1 46581132 2795929 2829939..2831000 1 NC_002937.3 identified by similarity to GP:19483757; tail protein 2831000 2795929 DVU2728 Desulfovibrio vulgaris str. Hildenborough tail protein YP_011940.1 2829939 D 882 CDS YP_011941.1 46581133 2795930 2830997..2831590 1 NC_002937.3 identified by similarity to GP:19483737; tail protein 2831590 2795930 DVU2729 Desulfovibrio vulgaris str. Hildenborough tail protein YP_011941.1 2830997 D 882 CDS YP_011942.1 46581134 2795931 2831674..2832564 1 NC_002937.3 tail fiber protein 2832564 2795931 DVU2730 Desulfovibrio vulgaris str. Hildenborough tail fiber protein YP_011942.1 2831674 D 882 CDS YP_011943.1 46581135 2795932 2832574..2833113 1 NC_002937.3 tail fiber assembly protein 2833113 2795932 DVU2731 Desulfovibrio vulgaris str. Hildenborough tail fiber assembly protein YP_011943.1 2832574 D 882 CDS YP_011944.1 46581136 2795933 2833414..2833614 1 NC_002937.3 identified by similarity to OMNI:NTL03EC5013; hypothetical protein 2833614 2795933 DVU2732 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011944.1 2833414 D 882 CDS YP_011945.1 46581137 2795934 2833587..2834336 1 NC_002937.3 identified by match to protein family HMM PF01555; adenine specific DNA methyltransferase 2834336 2795934 DVU2733 Desulfovibrio vulgaris str. Hildenborough adenine specific DNA methyltransferase YP_011945.1 2833587 D 882 CDS YP_003858625.1 304569763 9714840 2835038..2836108 1 NC_002937.3 hypothetical protein 2836108 9714840 DVU4022 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858625.1 2835038 D 882 CDS YP_011947.1 46581139 2795937 2836219..2837517 1 NC_002937.3 identified by similarity to SP:P76085; phenylacetate-coenzyme A ligase 2837517 paaK-3 2795937 paaK-3 Desulfovibrio vulgaris str. Hildenborough phenylacetate-coenzyme A ligase YP_011947.1 2836219 D 882 CDS YP_011948.1 46581140 2795938 2837699..2838208 1 NC_002937.3 hypothetical protein 2838208 2795938 DVU2736 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011948.1 2837699 D 882 CDS YP_011949.1 46581141 2795939 2838542..2839306 1 NC_002937.3 identified by match to protein family HMM PF00588; RNA methyltransferase 2839306 2795939 DVU2737 Desulfovibrio vulgaris str. Hildenborough RNA methyltransferase YP_011949.1 2838542 D 882 CDS YP_011950.1 46581142 2795940 2839544..2841949 1 NC_002937.3 identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 2841949 2795940 DVU2738 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_011950.1 2839544 D 882 CDS YP_011951.2 304569729 2795941 2842359..2845445 1 NC_002937.3 identified by similarity to SP:O29548; match to protein family HMM PF00391; match to protein family HMM PF01326; pyruvate phosphate dikinase PEP/pyruvate binding subunit 2845445 2795941 DVU2739 Desulfovibrio vulgaris str. Hildenborough pyruvate phosphate dikinase PEP/pyruvate binding subunit YP_011951.2 2842359 D 882 CDS YP_011952.1 46581144 2795942 complement(2845923..2846648) 1 NC_002937.3 identified by similarity to SP:P21630; match to protein family HMM PF00005; high-affinity branched-chain amino acid ABC transporter ATP-binding protein 2846648 livF 2795942 livF Desulfovibrio vulgaris str. Hildenborough high-affinity branched-chain amino acid ABC transporter ATP-binding protein YP_011952.1 2845923 R 882 CDS YP_011953.1 46581145 2795943 complement(2846648..2847415) 1 NC_002937.3 identified by similarity to SP:P22730; match to protein family HMM PF00005; high-affinity branched chain amino acid ABC transporter ATP-binding protein 2847415 livG 2795943 livG Desulfovibrio vulgaris str. Hildenborough high-affinity branched chain amino acid ABC transporter ATP-binding protein YP_011953.1 2846648 R 882 CDS YP_011954.1 46581146 2795944 complement(2847425..2848501) 1 NC_002937.3 identified by similarity to SP:P22729; match to protein family HMM PF02653; high-affinity branched chain amino acid ABC transporter permease 2848501 livM 2795944 livM Desulfovibrio vulgaris str. Hildenborough high-affinity branched chain amino acid ABC transporter permease YP_011954.1 2847425 R 882 CDS YP_011955.1 46581147 2795945 complement(2848524..2849444) 1 NC_002937.3 identified by match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC ransporter, permease 2849444 livH 2795945 livH Desulfovibrio vulgaris str. Hildenborough high-affinity branched-chain amino acid ABC ransporter, permease YP_011955.1 2848524 R 882 CDS YP_011956.1 46581148 2794017 complement(2849554..2850711) 1 NC_002937.3 identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter perisplasmic amino acid binding protein 2850711 2794017 DVU2744 Desulfovibrio vulgaris str. Hildenborough high-affinity branched-chain amino acid ABC transporter perisplasmic amino acid binding protein YP_011956.1 2849554 R 882 CDS YP_011957.1 46581149 2794018 complement(2850916..2851014) 1 NC_002937.3 hypothetical protein 2851014 2794018 DVU2745 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011957.1 2850916 R 882 CDS YP_011958.1 46581150 2794019 2851089..2852033 1 NC_002937.3 identified by similarity to OMNI:NTL01FN0227; hypothetical protein 2852033 2794019 DVU2746 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011958.1 2851089 D 882 CDS YP_011959.1 46581151 2794020 2852451..2855495 1 NC_002937.3 hypothetical protein 2855495 2794020 DVU2747 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011959.1 2852451 D 882 CDS YP_011960.1 46581152 2794021 complement(2855627..2856400) 1 NC_002937.3 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 2856400 cobM 2794021 cobM Desulfovibrio vulgaris str. Hildenborough precorrin-4 C(11)-methyltransferase YP_011960.1 2855627 R 882 CDS YP_011961.1 46581153 2794022 complement(2856418..2857878) 1 NC_002937.3 identified by similarity to SP:P21921; match to protein family HMM PF00590; match to protein family HMM TIGR01468; precorrin-6Y C5,15-methyltransferase (decarboxylating) 2857878 cobL 2794022 cobL Desulfovibrio vulgaris str. Hildenborough precorrin-6Y C5,15-methyltransferase (decarboxylating) YP_011961.1 2856418 R 882 CDS YP_011962.1 46581154 2794023 complement(2858736..2859905) 1 NC_002937.3 identified by match to protein family HMM PF01888; match to protein family HMM TIGR00312; cobalamin biosynthesis protein CbiD 2859905 cbiD 2794023 cbiD Desulfovibrio vulgaris str. Hildenborough cobalamin biosynthesis protein CbiD YP_011962.1 2858736 R 882 CDS YP_011963.1 46581155 2794024 2860015..2860575 1 NC_002937.3 hypothetical protein 2860575 2794024 DVU2751 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011963.1 2860015 D 882 CDS YP_011964.1 46581156 2794025 2860586..2861107 1 NC_002937.3 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 2861107 2794025 DVU2752 Desulfovibrio vulgaris str. Hildenborough rhodanese-like domain-containing protein YP_011964.1 2860586 D 882 CDS YP_011965.1 46581157 2794026 2861217..2862044 1 NC_002937.3 identified by match to protein family HMM TIGR01909; hypothetical protein 2862044 2794026 DVU2753 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011965.1 2861217 D 882 CDS YP_011966.1 46581158 2794027 complement(2862310..2863287) 1 NC_002937.3 identified by similarity to SP:P28304; match to protein family HMM PF00107; quinone oxidoreductase 2863287 qor 2794027 qor Desulfovibrio vulgaris str. Hildenborough quinone oxidoreductase YP_011966.1 2862310 R 882 CDS YP_011967.1 46581159 2794028 complement(2863564..2864406) 1 NC_002937.3 identified by similarity to OMNI:DR1011; match to protein family HMM PF02642; hypothetical protein 2864406 2794028 DVU2755 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011967.1 2863564 R 882 CDS YP_011968.1 46581160 2794029 2864853..2865971 1 NC_002937.3 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; radical SAM domain-containing protein 2865971 2794029 DVU2756 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_011968.1 2864853 D 882 CDS YP_011969.1 46581161 2794030 2865968..2867095 1 NC_002937.3 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; radical SAM domain-containing protein 2867095 2794030 DVU2757 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_011969.1 2865968 D 882 CDS YP_011970.1 46581162 2794031 2867157..2867999 1 NC_002937.3 identified by similarity to GP:7242723; match to protein family HMM PF02621; hypothetical protein 2867999 2794031 DVU2758 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011970.1 2867157 D 882 CDS YP_011971.1 46581163 2794032 complement(2868041..2868187) 1 NC_002937.3 hypothetical protein 2868187 2794032 DVU2759 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011971.1 2868041 R 882 CDS YP_011972.1 46581164 2794033 2868372..2868983 1 NC_002937.3 hypothetical protein 2868983 2794033 DVU2760 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011972.1 2868372 D 882 CDS YP_011973.1 46581165 2794034 complement(2869107..2869292) 1 NC_002937.3 hypothetical protein 2869292 2794034 DVU2761 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011973.1 2869107 R 882 CDS YP_011974.1 46581166 2794035 complement(2869357..2870277) 1 NC_002937.3 identified by similarity to GP:7379678; match to protein family HMM PF00892; hypothetical protein 2870277 2794035 DVU2762 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011974.1 2869357 R 882 CDS YP_011975.1 46581167 2794036 complement(2870485..2873160) 1 NC_002937.3 identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254; TPR/GGDEF domain-containing protein 2873160 2794036 DVU2763 Desulfovibrio vulgaris str. Hildenborough TPR/GGDEF domain-containing protein YP_011975.1 2870485 R 882 CDS YP_011976.1 46581168 2796314 2873200..2873718 1 NC_002937.3 identified by match to protein family HMM PF00881; nitroreductase 2873718 2796314 DVU2764 Desulfovibrio vulgaris str. Hildenborough nitroreductase YP_011976.1 2873200 D 882 CDS YP_011977.1 46581169 2796315 2873718..2874344 1 NC_002937.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2874344 2796315 DVU2765 Desulfovibrio vulgaris str. Hildenborough metallo-beta-lactamase YP_011977.1 2873718 D 882 CDS YP_011978.1 46581170 2796316 2874432..2874599 1 NC_002937.3 hypothetical protein 2874599 2796316 DVU2766 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011978.1 2874432 D 882 CDS YP_011979.1 46581171 2796317 2874596..2875210 1 NC_002937.3 iron-sulfur flavoprotein 2875210 2796317 DVU2767 Desulfovibrio vulgaris str. Hildenborough iron-sulfur flavoprotein YP_011979.1 2874596 D 882 CDS YP_011980.1 46581172 2796318 2875302..2876198 1 NC_002937.3 identified by similarity to SP:P31773; comF family protein 2876198 2796318 DVU2768 Desulfovibrio vulgaris str. Hildenborough comF family protein YP_011980.1 2875302 D 882 CDS YP_011981.1 46581173 2796319 2876621..2877403 1 NC_002937.3 identified by similarity to OMNI:NTL01FN1523; hypothetical protein 2877403 2796319 DVU2769 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011981.1 2876621 D 882 CDS YP_011982.1 46581174 2796320 2877513..2877911 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 2877911 2796320 DVU2770 Desulfovibrio vulgaris str. Hildenborough response regulator YP_011982.1 2877513 D 882 CDS YP_011983.1 46581175 2796321 2877923..2878888 1 NC_002937.3 identified by similarity to OMNI:NTL01RS0459; hypothetical protein 2878888 2796321 DVU2771 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011983.1 2877923 D 882 CDS YP_011984.1 46581176 2796322 complement(2879148..2880470) 1 NC_002937.3 identified by similarity to OMNI:NTL01TE2295; hypothetical protein 2880470 2796322 DVU2772 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011984.1 2879148 R 882 CDS YP_011985.1 46581177 2796323 complement(2880709..2881575) 1 NC_002937.3 identified by similarity to OMNI:NTL01TT1359; match to protein family HMM PF02588; hypothetical protein 2881575 2796323 DVU2773 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011985.1 2880709 R 882 CDS YP_011986.1 46581178 2796324 2881702..2882385 1 NC_002937.3 identified by match to protein family HMM PF00571; match to protein family HMM PF01842; hypothetical protein 2882385 2796324 DVU2774 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011986.1 2881702 D 882 CDS YP_011987.1 46581179 2796325 complement(2882832..2883107) 1 NC_002937.3 hypothetical protein 2883107 2796325 DVU2775 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011987.1 2882832 R 882 CDS YP_011988.1 46581180 2796326 2883462..2883779 1 NC_002937.3 identified by similarity to GP:145087; match to protein family HMM PF04358; dissimilatory sulfite reductase subunit gamma 2883779 dsvC 2796326 dsvC Desulfovibrio vulgaris str. Hildenborough dissimilatory sulfite reductase subunit gamma YP_011988.1 2883462 D 882 CDS YP_011989.1 46581181 2796327 complement(2883976..2884242) 1 NC_002937.3 hypothetical protein 2884242 2796327 DVU2777 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011989.1 2883976 R 882 CDS YP_011990.1 46581182 2796328 complement(2884308..2884580) 1 NC_002937.3 hypothetical protein 2884580 2796328 DVU2778 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011990.1 2884308 R 882 CDS YP_011991.1 46581183 2796329 complement(2884963..2886348) 1 NC_002937.3 identified by similarity to OMNI:NTL02SC3299; match to protein family HMM PF01547; ABC transporter substrate-binding protein 2886348 2796329 DVU2779 Desulfovibrio vulgaris str. Hildenborough ABC transporter substrate-binding protein YP_011991.1 2884963 R 882 CDS YP_011992.1 46581184 2796330 complement(2886490..2887365) 1 NC_002937.3 identified by similarity to OMNI:NTL01BH1681; match to protein family HMM PF02588; hypothetical protein 2887365 2796330 DVU2780 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011992.1 2886490 R 882 CDS YP_011993.1 46581185 2796331 complement(2887759..2888325) 1 NC_002937.3 hypothetical protein 2888325 2796331 DVU2781 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011993.1 2887759 R 882 CDS YP_011994.1 46581186 2796332 complement(2888408..2888572) 1 NC_002937.3 hypothetical protein 2888572 2796332 DVU2782 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011994.1 2888408 R 882 CDS YP_011995.1 46581187 2796333 complement(2888557..2889357) 1 NC_002937.3 identified by match to protein family HMM PF01925; hypothetical protein 2889357 2796333 DVU2783 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011995.1 2888557 R 882 CDS YP_011996.1 46581188 2795370 complement(2889364..2890389) 1 NC_002937.3 identified by match to protein family HMM PF01070; FMN-dependent family dehydrogenase 2890389 2795370 DVU2784 Desulfovibrio vulgaris str. Hildenborough FMN-dependent family dehydrogenase YP_011996.1 2889364 R 882 CDS YP_011997.1 46581189 2795371 complement(2890512..2891225) 1 NC_002937.3 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2891225 2795371 DVU2785 Desulfovibrio vulgaris str. Hildenborough GntR family transcriptional regulator YP_011997.1 2890512 R 882 CDS YP_011998.1 46581190 2795372 complement(2891237..2891335) 1 NC_002937.3 hypothetical protein 2891335 2795372 DVU2786 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011998.1 2891237 R 882 CDS YP_011999.1 46581191 2795373 complement(2891481..2891939) 1 NC_002937.3 identified by similarity to OMNI:NTL01NS2107; hypothetical protein 2891939 2795373 DVU2787 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_011999.1 2891481 R 882 CDS YP_012000.1 46581192 2795374 complement(2891957..2892319) 1 NC_002937.3 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 2892319 2795374 DVU2788 Desulfovibrio vulgaris str. Hildenborough ArsR family transcriptional regulator YP_012000.1 2891957 R 882 CDS YP_012001.1 46581193 2795375 2892728..2893279 1 NC_002937.3 identified by match to protein family HMM PF01184; Gpr1/Fun34/YaaH family protein 2893279 2795375 DVU2789 Desulfovibrio vulgaris str. Hildenborough Gpr1/Fun34/YaaH family protein YP_012001.1 2892728 D 882 CDS YP_012002.1 46581194 2795376 complement(2893661..2893801) 1 NC_002937.3 hypothetical protein 2893801 2795376 DVU2790 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012002.1 2893661 R 882 CDS YP_012003.1 46581195 2795377 2893852..2894631 1 NC_002937.3 cytochrome c family protein 2894631 2795377 DVU2791 Desulfovibrio vulgaris str. Hildenborough cytochrome c family protein YP_012003.1 2893852 D 882 CDS YP_012004.1 46581196 2795378 2894645..2895850 1 NC_002937.3 identified by similarity to SP:P77611; match to protein family HMM PF00037; electron transport complex protein RnfC 2895850 2795378 DVU2792 Desulfovibrio vulgaris str. Hildenborough electron transport complex protein RnfC YP_012004.1 2894645 D 882 CDS YP_012005.1 46581197 2795379 2895988..2896944 1 NC_002937.3 identified by match to protein family HMM PF03116; electron transport complex protein RnfD 2896944 2795379 DVU2793 Desulfovibrio vulgaris str. Hildenborough electron transport complex protein RnfD YP_012005.1 2895988 D 882 CDS YP_012006.1 46581198 2795380 2896947..2897522 1 NC_002937.3 identified by similarity to SP:P58345; match to protein family HMM PF04205; electron transport complex protein RnfG 2897522 2795380 DVU2794 Desulfovibrio vulgaris str. Hildenborough electron transport complex protein RnfG YP_012006.1 2896947 D 882 CDS YP_012007.1 46581199 2795381 2897534..2898205 1 NC_002937.3 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2898205 2795381 DVU2795 Desulfovibrio vulgaris str. Hildenborough electron transport complex protein RsxE YP_012007.1 2897534 D 882 CDS YP_012008.1 46581200 2795382 2898215..2898790 1 NC_002937.3 identified by similarity to SP:P76181; match to protein family HMM PF02508; electron transport complex protein RnfA 2898790 2795382 DVU2796 Desulfovibrio vulgaris str. Hildenborough electron transport complex protein RnfA YP_012008.1 2898215 D 882 CDS YP_012009.1 46581201 2795383 2898860..2899747 1 NC_002937.3 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 2899747 2795383 DVU2797 Desulfovibrio vulgaris str. Hildenborough ferredoxin YP_012009.1 2898860 D 882 CDS YP_012010.1 46581202 2795384 2899744..2900754 1 NC_002937.3 identified by match to protein family HMM PF02424; match to protein family HMM TIGR01409; ApbE family protein 2900754 2795384 DVU2798 Desulfovibrio vulgaris str. Hildenborough ApbE family protein YP_012010.1 2899744 D 882 CDS YP_012011.1 46581203 2795385 complement(2900849..2901265) 1 NC_002937.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2901265 2795385 DVU2799 Desulfovibrio vulgaris str. Hildenborough MarR family transcriptional regulator YP_012011.1 2900849 R 882 CDS YP_012012.1 46581204 2795386 complement(2901273..2903174) 1 NC_002937.3 identified by similarity to SP:P77894; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal translocating P-type ATPase 2903174 2795386 DVU2800 Desulfovibrio vulgaris str. Hildenborough heavy metal translocating P-type ATPase YP_012012.1 2901273 R 882 CDS YP_012013.1 46581205 2795387 2903357..2904691 1 NC_002937.3 hypothetical protein 2904691 2795387 DVU2801 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012013.1 2903357 D 882 CDS YP_012014.1 46581206 2795388 2904939..2905634 1 NC_002937.3 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2905634 2795388 DVU2802 Desulfovibrio vulgaris str. Hildenborough GntR family transcriptional regulator YP_012014.1 2904939 D 882 CDS YP_012015.1 46581207 2795389 2905914..2907323 1 NC_002937.3 hypothetical protein 2907323 2795389 DVU2803 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012015.1 2905914 D 882 CDS YP_012016.1 46581208 2793765 2907340..2908497 1 NC_002937.3 identified by match to protein family HMM TIGR01409; metallo-beta-lactamase 2908497 2793765 DVU2804 Desulfovibrio vulgaris str. Hildenborough metallo-beta-lactamase YP_012016.1 2907340 D 882 CDS YP_012017.2 304569730 2793766 2908544..2910490 1 NC_002937.3 identified by match to protein family HMM PF02492; P47K family cobalamin synthesis protein 2910490 2793766 DVU2805 Desulfovibrio vulgaris str. Hildenborough P47K family cobalamin synthesis protein YP_012017.2 2908544 D 882 CDS YP_012018.1 46581210 2793767 2910477..2911226 1 NC_002937.3 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 2911226 2793767 DVU2806 Desulfovibrio vulgaris str. Hildenborough MotA/TolQ/ExbB proton channel family protein YP_012018.1 2910477 D 882 CDS YP_012019.1 46581211 2793768 2911246..2911656 1 NC_002937.3 identified by match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 2911656 2793768 DVU2807 Desulfovibrio vulgaris str. Hildenborough biopolymer ExbD/TolR family transporter YP_012019.1 2911246 D 882 CDS YP_012020.1 46581212 2793769 2911653..2912162 1 NC_002937.3 identified by similarity to GP:17982262; match to protein family HMM TIGR01352; TonB domain-containing protein 2912162 2793769 DVU2808 Desulfovibrio vulgaris str. Hildenborough TonB domain-containing protein YP_012020.1 2911653 D 882 CDS YP_012021.1 46581213 2793770 complement(2912373..2912807) 1 NC_002937.3 identified by similarity to SP:P00133; match to protein family HMM PF02085; cytochrome c3 2912807 2793770 DVU2809 Desulfovibrio vulgaris str. Hildenborough cytochrome c3 YP_012021.1 2912373 R 882 CDS YP_012022.2 304569731 2793771 complement(2912822..2913769) 1 NC_002937.3 identified by similarity to SP:P13024; formate dehydrogenase formation protein FdhE 2913769 2793771 DVU2810 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase formation protein FdhE YP_012022.2 2912822 R 882 CDS YP_012023.1 46581215 2793772 complement(2913843..2914502) 1 NC_002937.3 identified by similarity to SP:P24184; formate dehydrogenase subunit beta 2914502 2793772 DVU2811 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase subunit beta YP_012023.1 2913843 R 882 CDS YP_012024.1 46581216 2793773 complement(2914554..2917592) 1 NC_002937.3 selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase subunit alpha 2917592 fdnG-3 2793773 fdnG-3 Desulfovibrio vulgaris str. Hildenborough formate dehydrogenase subunit alpha YP_012024.1 2914554 R 882 CDS YP_012025.1 46581217 2793774 complement(2917842..2917940) 1 NC_002937.3 hypothetical protein 2917940 2793774 DVU2813 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012025.1 2917842 R 882 CDS YP_012026.1 46581218 2793775 complement(2918182..2918355) 1 NC_002937.3 hypothetical protein 2918355 2793775 DVU2814 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012026.1 2918182 R 882 CDS YP_012027.1 46581219 2793776 complement(2918385..2919995) 1 NC_002937.3 identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane efflux protein 2919995 2793776 DVU2815 Desulfovibrio vulgaris str. Hildenborough outer membrane efflux protein YP_012027.1 2918385 R 882 CDS YP_012028.1 46581220 2793777 complement(2920010..2923222) 1 NC_002937.3 identified by similarity to SP:P31224; match to protein family HMM PF00873; match to protein family HMM TIGR00915; multidrug resistance protein 2923222 2793777 DVU2816 Desulfovibrio vulgaris str. Hildenborough multidrug resistance protein YP_012028.1 2920010 R 882 CDS YP_012029.1 46581221 2793778 complement(2923238..2924491) 1 NC_002937.3 identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; multidrug resistance protein 2924491 2793778 DVU2817 Desulfovibrio vulgaris str. Hildenborough multidrug resistance protein YP_012029.1 2923238 R 882 CDS YP_012030.1 46581222 2793779 complement(2924566..2924784) 1 NC_002937.3 hypothetical protein 2924784 2793779 DVU2818 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012030.1 2924566 R 882 CDS YP_012031.1 46581223 2793780 2924948..2925556 1 NC_002937.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2925556 2793780 DVU2819 Desulfovibrio vulgaris str. Hildenborough TetR family transcriptional regulator YP_012031.1 2924948 D 882 CDS YP_012032.1 46581224 2793781 complement(2925744..2926580) 1 NC_002937.3 identified by match to protein family HMM PF04909; amidohydrolase 2926580 2793781 DVU2820 Desulfovibrio vulgaris str. Hildenborough amidohydrolase YP_012032.1 2925744 R 882 CDS YP_012033.1 46581225 2793782 complement(2926577..2926798) 1 NC_002937.3 hypothetical protein 2926798 2793782 DVU2821 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012033.1 2926577 R 882 CDS YP_012034.1 46581226 2793783 2927266..2928276 1 NC_002937.3 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate family transporter subunit DctP 2928276 2793783 DVU2822 Desulfovibrio vulgaris str. Hildenborough TRAP dicarboxylate family transporter subunit DctP YP_012034.1 2927266 D 882 CDS YP_012035.1 46581227 2793784 2928486..2930261 1 NC_002937.3 identified by similarity to GP:12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786; TRAP transporter subunit DctMQ 2930261 2793784 DVU2823 Desulfovibrio vulgaris str. Hildenborough TRAP transporter subunit DctMQ YP_012035.1 2928486 D 882 CDS YP_012036.1 46581228 2793785 2930367..2932853 1 NC_002937.3 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; formate acetyltransferase 2932853 2793785 DVU2824 Desulfovibrio vulgaris str. Hildenborough formate acetyltransferase YP_012036.1 2930367 D 882 CDS YP_012037.1 46581229 2796379 2933030..2933953 1 NC_002937.3 identified by similarity to SP:P09374; similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase 1 activating enzyme 2933953 2796379 DVU2825 Desulfovibrio vulgaris str. Hildenborough pyruvate formate-lyase 1 activating enzyme YP_012037.1 2933030 D 882 CDS YP_012038.1 46581230 2796380 2934002..2934358 1 NC_002937.3 hypothetical protein 2934358 2796380 DVU2826 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012038.1 2934002 D 882 CDS YP_012039.1 46581231 2796381 2934393..2935814 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2935814 2796381 DVU2827 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_012039.1 2934393 D 882 CDS YP_012040.1 46581232 2796382 2936472..2937656 1 NC_002937.3 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 2937656 2796382 DVU2828 Desulfovibrio vulgaris str. Hildenborough phage integrase site specific recombinase YP_012040.1 2936472 D 882 CDS YP_012041.1 46581233 2796383 complement(2937658..2937900) 1 NC_002937.3 hypothetical protein 2937900 2796383 DVU2829 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012041.1 2937658 R 882 CDS YP_012042.1 46581234 2796384 complement(2937965..2938330) 1 NC_002937.3 hypothetical protein 2938330 2796384 DVU2830 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012042.1 2937965 R 882 CDS YP_012043.1 46581235 2796385 complement(2938713..2938907) 1 NC_002937.3 hypothetical protein 2938907 2796385 DVU2831 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012043.1 2938713 R 882 CDS YP_012044.1 46581236 2796386 complement(2938894..2939355) 1 NC_002937.3 identified by similarity to GP:4530498; transcriptional regulator cII 2939355 2796386 DVU2832 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator cII YP_012044.1 2938894 R 882 CDS YP_012045.1 46581237 2796387 2939513..2939842 1 NC_002937.3 hypothetical protein 2939842 2796387 DVU2833 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012045.1 2939513 D 882 CDS YP_012046.1 46581238 2796388 complement(2939832..2940170) 1 NC_002937.3 hypothetical protein 2940170 2796388 DVU2834 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012046.1 2939832 R 882 CDS YP_012047.1 46581239 2796389 complement(2940240..2940512) 1 NC_002937.3 transcriptional regulator 2940512 2796389 DVU2835 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_012047.1 2940240 R 882 CDS YP_012048.1 46581240 2796390 2940609..2941055 1 NC_002937.3 hypothetical protein 2941055 2796390 DVU2836 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012048.1 2940609 D 882 CDS YP_012049.1 46581241 2796391 2941168..2942241 1 NC_002937.3 identified by similarity to OMNI:NTL01XC4052; match to protein family HMM PF04313; hypothetical protein 2942241 2796391 DVU2837 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012049.1 2941168 D 882 CDS YP_012050.1 46581242 2796392 2942313..2943650 1 NC_002937.3 identified by similarity to OMNI:NTL02ST1547; hypothetical protein 2943650 2796392 DVU2838 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012050.1 2942313 D 882 CDS YP_012051.1 46581243 2796393 2943651..2944175 1 NC_002937.3 identified by similarity to OMNI:NTL01TA00070; hypothetical protein 2944175 2796393 DVU2839 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012051.1 2943651 D 882 CDS YP_012052.1 46581244 2796394 complement(2944284..2944985) 1 NC_002937.3 identified by similarity to OMNI:VCA0483; hypothetical protein 2944985 2796394 DVU2840 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012052.1 2944284 R 882 CDS YP_012053.1 46581245 2796395 complement(2944985..2946184) 1 NC_002937.3 identified by similarity to SP:P14633; type II restriction endonuclease 2946184 2796395 DVU2841 Desulfovibrio vulgaris str. Hildenborough type II restriction endonuclease YP_012053.1 2944985 R 882 CDS YP_012054.1 46581246 2796396 2946324..2947400 1 NC_002937.3 identified by similarity to SP:P11876; match to protein family HMM PF00145; match to protein family HMM TIGR00675; type II DNA modification methyltransferase 2947400 2796396 DVU2842 Desulfovibrio vulgaris str. Hildenborough type II DNA modification methyltransferase YP_012054.1 2946324 D 882 CDS YP_012055.1 46581247 2796397 2947409..2947819 1 NC_002937.3 identified by similarity to SP:P09184; match to protein family HMM PF03852; DNA mismatch endonuclease Vsr 2947819 2796397 DVU2843 Desulfovibrio vulgaris str. Hildenborough DNA mismatch endonuclease Vsr YP_012055.1 2947409 D 882 CDS YP_012056.1 46581248 2795579 2947836..2948699 1 NC_002937.3 hypothetical protein 2948699 2795579 DVU2844 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012056.1 2947836 D 882 CDS YP_012057.1 46581249 2795580 2948707..2949135 1 NC_002937.3 identified by similarity to SP:O07513; match to protein family HMM PF01230; HIT family protein 2949135 2795580 DVU2845 Desulfovibrio vulgaris str. Hildenborough HIT family protein YP_012057.1 2948707 D 882 CDS YP_012058.1 46581250 2795581 2949141..2949314 1 NC_002937.3 hypothetical protein 2949314 2795581 DVU2846 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012058.1 2949141 D 882 CDS YP_012059.1 46581251 2795582 complement(2949441..2949770) 1 NC_002937.3 hypothetical protein 2949770 2795582 DVU2847 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012059.1 2949441 R 882 CDS YP_012060.1 46581252 2795583 complement(2949782..2950321) 1 NC_002937.3 tail fiber assembly protein 2950321 2795583 DVU2848 Desulfovibrio vulgaris str. Hildenborough tail fiber assembly protein YP_012060.1 2949782 R 882 CDS YP_012061.1 46581253 2795584 complement(2950331..2951146) 1 NC_002937.3 tail fiber protein 2951146 2795584 DVU2849 Desulfovibrio vulgaris str. Hildenborough tail fiber protein YP_012061.1 2950331 R 882 CDS YP_012062.1 46581254 2795585 complement(2951139..2951765) 1 NC_002937.3 identified by similarity to GP:19483737; tail protein 2951765 2795585 DVU2850 Desulfovibrio vulgaris str. Hildenborough tail protein YP_012062.1 2951139 R 882 CDS YP_012063.1 46581255 2795586 complement(2951774..2952835) 1 NC_002937.3 identified by similarity to GP:19483757; tail protein 2952835 2795586 DVU2851 Desulfovibrio vulgaris str. Hildenborough tail protein YP_012063.1 2951774 R 882 CDS YP_012064.1 46581256 2795587 complement(2952844..2953320) 1 NC_002937.3 identified by similarity to GP:19483756; tail protein 2953320 2795587 DVU2852 Desulfovibrio vulgaris str. Hildenborough tail protein YP_012064.1 2952844 R 882 CDS YP_012065.1 46581257 2795588 complement(2953322..2953960) 1 NC_002937.3 identified by match to protein family HMM TIGR01644; phage baseplate assembly protein V 2953960 2795588 DVU2853 Desulfovibrio vulgaris str. Hildenborough phage baseplate assembly protein V YP_012065.1 2953322 R 882 CDS YP_012066.1 46581258 2795589 complement(2953962..2955095) 1 NC_002937.3 identified by similarity to SP:P08558; tail protein 2955095 2795589 DVU2854 Desulfovibrio vulgaris str. Hildenborough tail protein YP_012066.1 2953962 R 882 CDS YP_012067.1 46581259 2795590 complement(2955218..2956417) 1 NC_002937.3 identified by similarity to GP:19483753; tail/DNA circulation protein 2956417 2795590 DVU2855 Desulfovibrio vulgaris str. Hildenborough tail/DNA circulation protein YP_012067.1 2955218 R 882 CDS YP_012068.1 46581260 2795591 complement(2956426..2957916) 1 NC_002937.3 identified by similarity to GP:915377; hypothetical protein 2957916 2795591 DVU2856 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012068.1 2956426 R 882 CDS YP_012069.1 46581261 2795592 complement(2958116..2958376) 1 NC_002937.3 identified by similarity to OMNI:NTL03ST4078; hypothetical protein 2958376 2795592 DVU2857 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012069.1 2958116 R 882 CDS YP_012070.1 46581262 2795593 complement(2958376..2958741) 1 NC_002937.3 identified by similarity to SP:P79679; tail tube protein 2958741 2795593 DVU2858 Desulfovibrio vulgaris str. Hildenborough tail tube protein YP_012070.1 2958376 R 882 CDS YP_012071.1 46581263 2795594 complement(2958791..2960254) 1 NC_002937.3 identified by similarity to SP:P79678; tail sheath protein 2960254 2795594 DVU2859 Desulfovibrio vulgaris str. Hildenborough tail sheath protein YP_012071.1 2958791 R 882 CDS YP_012072.1 46581264 2795595 complement(2960258..2960449) 1 NC_002937.3 identified by similarity to GP:1834290; hypothetical protein 2960449 2795595 DVU2860 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012072.1 2960258 R 882 CDS YP_012073.1 46581265 2795596 complement(2960433..2960990) 1 NC_002937.3 hypothetical protein 2960990 2795596 DVU2861 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012073.1 2960433 R 882 CDS YP_012074.1 46581266 2795597 complement(2960987..2961313) 1 NC_002937.3 hypothetical protein 2961313 2795597 DVU2862 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012074.1 2960987 R 882 CDS YP_012075.1 46581267 2795598 complement(2961310..2961903) 1 NC_002937.3 hypothetical protein 2961903 2795598 DVU2863 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012075.1 2961310 R 882 CDS YP_012076.1 46581268 2795599 complement(2961906..2962049) 1 NC_002937.3 hypothetical protein 2962049 2795599 DVU2864 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012076.1 2961906 R 882 CDS YP_012077.1 46581269 2795529 complement(2962066..2962476) 1 NC_002937.3 lipoprotein 2962476 2795529 DVU2865 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012077.1 2962066 R 882 CDS YP_012078.1 46581270 2795530 complement(2962494..2963042) 1 NC_002937.3 identified by similarity to GP:6714967; match to protein family HMM PF05838; hypothetical protein 2963042 2795530 DVU2866 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012078.1 2962494 R 882 CDS YP_012079.1 46581271 2795531 complement(2963063..2963551) 1 NC_002937.3 identified by match to protein family HMM TIGR01593; holin 2963551 2795531 DVU2867 Desulfovibrio vulgaris str. Hildenborough holin YP_012079.1 2963063 R 882 CDS YP_012080.1 46581272 2795532 complement(2963554..2963901) 1 NC_002937.3 hypothetical protein 2963901 2795532 DVU2868 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012080.1 2963554 R 882 CDS YP_012081.1 46581273 2795533 complement(2963910..2964914) 1 NC_002937.3 identified by match to protein family HMM PF03864; major head protein 2964914 2795533 DVU2869 Desulfovibrio vulgaris str. Hildenborough major head protein YP_012081.1 2963910 R 882 CDS YP_012082.1 46581274 2795534 complement(2964926..2965309) 1 NC_002937.3 identified by similarity to OMNI:NTL01RS0859; hypothetical protein 2965309 2795534 DVU2870 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012082.1 2964926 R 882 CDS YP_012083.1 46581275 2795535 complement(2965319..2966638) 1 NC_002937.3 identified by match to protein family HMM PF01343; minor capsid protein C 2966638 2795535 DVU2871 Desulfovibrio vulgaris str. Hildenborough minor capsid protein C YP_012083.1 2965319 R 882 CDS YP_012084.1 46581276 2795536 complement(2966622..2968322) 1 NC_002937.3 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; lambda family phage portal protein 2968322 2795536 DVU2872 Desulfovibrio vulgaris str. Hildenborough lambda family phage portal protein YP_012084.1 2966622 R 882 CDS YP_012085.1 46581277 2795537 complement(2968326..2968601) 1 NC_002937.3 hypothetical protein 2968601 2795537 DVU2873 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012085.1 2968326 R 882 CDS YP_012086.1 46581278 2795538 complement(2968828..2969256) 1 NC_002937.3 hypothetical protein 2969256 2795538 DVU2874 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012086.1 2968828 R 882 CDS YP_012087.1 46581279 2795539 complement(2969249..2969467) 1 NC_002937.3 identified by match to protein family HMM TIGR01764; DNA-binding protein 2969467 2795539 DVU2875 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_012087.1 2969249 R 882 CDS YP_012088.1 46581280 2795540 complement(2969464..2971350) 1 NC_002937.3 identified by similarity to GP:13361094; terminase large subunit 2971350 2795540 DVU2876 Desulfovibrio vulgaris str. Hildenborough terminase large subunit YP_012088.1 2969464 R 882 CDS YP_012089.1 46581281 2795541 complement(2971442..2972164) 1 NC_002937.3 hypothetical protein 2972164 2795541 DVU2877 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012089.1 2971442 R 882 CDS YP_012090.1 46581282 2795542 complement(2972157..2973515) 1 NC_002937.3 identified by match to protein family HMM PF01555; match to protein family HMM PF02195; adenine specific DNA methyltransferase 2973515 2795542 DVU2878 Desulfovibrio vulgaris str. Hildenborough adenine specific DNA methyltransferase YP_012090.1 2972157 R 882 CDS YP_012091.1 46581283 2795543 complement(2973642..2975198) 1 NC_002937.3 identified by similarity to OMNI:CC3049; hypothetical protein 2975198 2795543 DVU2879 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012091.1 2973642 R 882 CDS YP_012092.1 46581284 2795544 2975256..2975384 1 NC_002937.3 hypothetical protein 2975384 2795544 DVU2880 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012092.1 2975256 D 882 CDS YP_012093.1 46581285 2795545 complement(2975465..2977150) 1 NC_002937.3 identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613; P4 family phage/plasmid primase 2977150 2795545 DVU2881 Desulfovibrio vulgaris str. Hildenborough P4 family phage/plasmid primase YP_012093.1 2975465 R 882 CDS YP_012094.1 46581286 2795547 2978219..2979715 1 NC_002937.3 identified by similarity to SP:P15925; match to protein family HMM TIGR01499; folylpolyglutamate synthase 2979715 folC 2795547 folC Desulfovibrio vulgaris str. Hildenborough folylpolyglutamate synthase YP_012094.1 2978219 D 882 CDS YP_012095.1 46581287 2795548 2979887..2981296 1 NC_002937.3 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 2981296 selA 2795548 selA Desulfovibrio vulgaris str. Hildenborough selenocysteine synthase YP_012095.1 2979887 D 882 CDS YP_012096.1 46581288 2795549 2981355..2982758 1 NC_002937.3 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 2982758 2795549 DVU2884 Desulfovibrio vulgaris str. Hildenborough aminopeptidase 1 YP_012096.1 2981355 D 882 CDS YP_012097.1 46581289 2793915 2982927..2984120 1 NC_002937.3 identified by similarity to GP:155577; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 2984120 2793915 DVU2885 Desulfovibrio vulgaris str. Hildenborough iron-containing alcohol dehydrogenase YP_012097.1 2982927 D 882 CDS YP_012098.1 46581290 2793916 2984227..2985066 1 NC_002937.3 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; AraC family transcriptional regulator 2985066 2793916 DVU2886 Desulfovibrio vulgaris str. Hildenborough AraC family transcriptional regulator YP_012098.1 2984227 D 882 CDS YP_012099.1 46581291 2793917 2985317..2986285 1 NC_002937.3 identified by similarity to GP:9946975; match to protein family HMM PF00892; hypothetical protein 2986285 2793917 DVU2887 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012099.1 2985317 D 882 CDS YP_012100.1 46581292 2793918 complement(2986467..2987294) 1 NC_002937.3 identified by similarity to SP:Q05596; match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein 2987294 2793918 DVU2888 Desulfovibrio vulgaris str. Hildenborough cobalt ABC transporter ATP-binding protein YP_012100.1 2986467 R 882 CDS YP_012101.1 46581293 2793919 complement(2987291..2987839) 1 NC_002937.3 identified by match to protein family HMM PF02632; BioY family protein 2987839 2793919 DVU2889 Desulfovibrio vulgaris str. Hildenborough BioY family protein YP_012101.1 2987291 R 882 CDS YP_012102.1 46581294 2793920 2987858..2988736 1 NC_002937.3 hypothetical protein 2988736 2793920 DVU2890 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012102.1 2987858 D 882 CDS YP_012103.1 46581295 2793921 2988755..2989174 1 NC_002937.3 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 2989174 nikR 2793921 nikR Desulfovibrio vulgaris str. Hildenborough nickel responsive regulator YP_012103.1 2988755 D 882 CDS YP_012104.2 304569732 2793922 2989179..2989979 1 NC_002937.3 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 2989979 2793922 DVU2892 Desulfovibrio vulgaris str. Hildenborough GTP cyclohydrolase YP_012104.2 2989179 D 882 CDS YP_012105.1 46581297 2793923 2990027..2990404 1 NC_002937.3 identified by similarity to SP:P75935; match to protein family HMM PF00460; flagellar basal-body rod protein 2990404 2793923 DVU2893 Desulfovibrio vulgaris str. Hildenborough flagellar basal-body rod protein YP_012105.1 2990027 D 882 CDS YP_012106.1 46581298 2793924 2990682..2991731 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 2991731 2793924 DVU2894 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_012106.1 2990682 D 882 CDS YP_012107.1 46581299 2793925 2991759..2992061 1 NC_002937.3 hypothetical protein 2992061 2793925 DVU2895 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012107.1 2991759 D 882 CDS YP_012108.1 46581300 2793926 2992043..2995273 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 2995273 2793926 DVU2896 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012108.1 2992043 D 882 CDS YP_012109.1 46581301 2793927 2995616..2996605 1 NC_002937.3 identified by similarity to SP:O67039; match to protein family HMM PF01875; hypothetical protein 2996605 2793927 DVU2897 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012109.1 2995616 D 882 CDS YP_012110.1 46581302 2793928 2996736..2997737 1 NC_002937.3 identified by similarity to OMNI:NTL01MM1125; hypothetical protein 2997737 2793928 DVU2898 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012110.1 2996736 D 882 CDS YP_012111.1 46581303 2793929 complement(2998122..2998982) 1 NC_002937.3 hypothetical protein 2998982 2793929 DVU2899 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012111.1 2998122 R 882 CDS YP_012112.1 46581304 2793930 2999180..3000379 1 NC_002937.3 identified by match to protein family HMM PF01979; amidohydrolase 3000379 2793930 DVU2900 Desulfovibrio vulgaris str. Hildenborough amidohydrolase YP_012112.1 2999180 D 882 CDS YP_012113.1 46581305 2793931 3000393..3001346 1 NC_002937.3 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3001346 pyrB 2793931 pyrB Desulfovibrio vulgaris str. Hildenborough aspartate carbamoyltransferase catalytic subunit YP_012113.1 3000393 D 882 CDS YP_012114.1 46581306 2793932 3001346..3002614 1 NC_002937.3 identified by similarity to SP:P25995; match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase 3002614 pyrC 2793932 pyrC Desulfovibrio vulgaris str. Hildenborough dihydroorotase YP_012114.1 3001346 D 882 CDS YP_012115.1 46581307 2793933 3002932..3004260 1 NC_002937.3 HD domain-containing protein 3004260 2793933 DVU2903 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_012115.1 3002932 D 882 CDS YP_012116.1 46581308 2793934 3004734..3005828 1 NC_002937.3 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 3005828 2793934 DVU2904 Desulfovibrio vulgaris str. Hildenborough ribosomal RNA large subunit methyltransferase N YP_012116.1 3004734 D 882 CDS YP_012117.1 46581309 2793935 complement(3006122..3007300) 1 NC_002937.3 identified by similarity to SP:Q04944; match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 3007300 2793935 DVU2905 Desulfovibrio vulgaris str. Hildenborough iron-containing alcohol dehydrogenase YP_012117.1 3006122 R 882 CDS YP_012118.1 46581310 2794047 complement(3007579..3008982) 1 NC_002937.3 identified by similarity to SP:P04152; match to protein family HMM PF00817; umuC protein 3008982 umuC 2794047 umuC Desulfovibrio vulgaris str. Hildenborough umuC protein YP_012118.1 3007579 R 882 CDS YP_012119.1 46581311 2794048 complement(3009177..3009671) 1 NC_002937.3 identified by similarity to SP:P04153; match to protein family HMM PF00717; umuD protein 3009671 umuD 2794048 umuD Desulfovibrio vulgaris str. Hildenborough umuD protein YP_012119.1 3009177 R 882 CDS YP_012120.1 46581312 2794049 3009966..3010718 1 NC_002937.3 hypothetical protein 3010718 2794049 DVU2908 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012120.1 3009966 D 882 CDS YP_012121.1 46581313 2794050 3010822..3011235 1 NC_002937.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3011235 2794050 DVU2909 Desulfovibrio vulgaris str. Hildenborough MarR family transcriptional regulator YP_012121.1 3010822 D 882 CDS YP_012122.1 46581314 2794051 3011248..3011853 1 NC_002937.3 identified by similarity to OMNI:NTL01YP1657; match to protein family HMM PF02659; hypothetical protein 3011853 2794051 DVU2910 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012122.1 3011248 D 882 CDS YP_012123.1 46581315 2794052 complement(3012054..3012815) 1 NC_002937.3 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 3012815 2794052 DVU2911 Desulfovibrio vulgaris str. Hildenborough hemolysin A YP_012123.1 3012054 R 882 CDS YP_012124.1 46581316 2794053 3013017..3013232 1 NC_002937.3 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 3013232 rpmE 2794053 rpmE Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L31 YP_012124.1 3013017 D 882 CDS YP_012125.1 46581317 2794054 3013347..3014354 1 NC_002937.3 lipoprotein 3014354 2794054 DVU2913 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012125.1 3013347 D 882 CDS YP_012126.1 46581318 2794055 3014361..3015434 1 NC_002937.3 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3015434 prfA 2794055 prfA Desulfovibrio vulgaris str. Hildenborough peptide chain release factor 1 YP_012126.1 3014361 D 882 CDS YP_012127.1 46581319 2794056 3015745..3015909 1 NC_002937.3 hypothetical protein 3015909 2794056 DVU2915 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012127.1 3015745 D 882 CDS YP_012128.1 46581320 2794057 3016134..3017021 1 NC_002937.3 identified by similarity to SP:P37186; match to protein family HMM TIGR00536; hemK protein 3017021 hemK 2794057 hemK Desulfovibrio vulgaris str. Hildenborough hemK protein YP_012128.1 3016134 D 882 CDS YP_012129.1 46581321 2794058 3017229..3018155 1 NC_002937.3 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3018155 lpxC 2794058 lpxC Desulfovibrio vulgaris str. Hildenborough UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_012129.1 3017229 D 882 CDS YP_012130.1 46581322 2794059 3018288..3018524 1 NC_002937.3 hypothetical protein 3018524 2794059 DVU2918 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012130.1 3018288 D 882 CDS YP_012131.1 46581323 2794060 complement(3018487..3019026) 1 NC_002937.3 hypothetical protein 3019026 2794060 DVU2919 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012131.1 3018487 R 882 CDS YP_012132.1 46581324 2793957 3019503..3020696 1 NC_002937.3 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3020696 tuf 2793957 tuf Desulfovibrio vulgaris str. Hildenborough elongation factor Tu YP_012132.1 3019503 D 882 CDS YP_012133.1 46581325 2793958 3020701..3020850 1 NC_002937.3 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3020850 rpmG 2793958 rpmG Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L33 YP_012133.1 3020701 D 882 CDS YP_012134.1 46581326 2793960 3020976..3021227 1 NC_002937.3 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 3021227 secE 2793960 secE Desulfovibrio vulgaris str. Hildenborough preprotein translocase subunit SecE YP_012134.1 3020976 D 882 CDS YP_012135.1 46581327 2793961 3021239..3021790 1 NC_002937.3 identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription antitermination protein NusG 3021790 nusG 2793961 nusG Desulfovibrio vulgaris str. Hildenborough transcription antitermination protein NusG YP_012135.1 3021239 D 882 CDS YP_012136.1 46581328 2793962 3021847..3022269 1 NC_002937.3 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 3022269 rplK 2793962 rplK Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L11 YP_012136.1 3021847 D 882 CDS YP_012137.1 46581329 2793963 3022379..3023086 1 NC_002937.3 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3023086 rplA 2793963 rplA Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L1 YP_012137.1 3022379 D 882 CDS YP_012138.1 46581330 2793964 3023255..3023776 1 NC_002937.3 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 3023776 rplJ 2793964 rplJ Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L10 YP_012138.1 3023255 D 882 CDS YP_012139.1 46581331 2793965 3023830..3024213 1 NC_002937.3 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 3024213 rplL 2793965 rplL Desulfovibrio vulgaris str. Hildenborough 50S ribosomal protein L7/L12 YP_012139.1 3023830 D 882 CDS YP_012140.1 46581332 2793966 3024679..3028797 1 NC_002937.3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3028797 rpoB 2793966 rpoB Desulfovibrio vulgaris str. Hildenborough DNA-directed RNA polymerase subunit beta YP_012140.1 3024679 D 882 CDS YP_012141.1 46581333 2793967 3028905..3033062 1 NC_002937.3 identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR01612; DNA-directed RNA polymerase subunit beta' 3033062 rpoC 2793967 rpoC Desulfovibrio vulgaris str. Hildenborough DNA-directed RNA polymerase subunit beta' YP_012141.1 3028905 D 882 CDS YP_012142.1 46581334 2793968 3033771..3034211 1 NC_002937.3 hypothetical protein 3034211 2793968 DVU2930 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012142.1 3033771 D 882 CDS YP_012143.1 46581335 2793969 3034225..3036426 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR01369; sensory box histidine kinase 3036426 2793969 DVU2931 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_012143.1 3034225 D 882 CDS YP_012144.1 46581336 2793970 3036460..3037386 1 NC_002937.3 identified by similarity to OMNI:NTL03ST2282; match to protein family HMM TIGR01777; hypothetical protein 3037386 2793970 DVU2932 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012144.1 3036460 D 882 CDS YP_012145.1 46581337 2793971 3037398..3038774 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277; response regulator/sensory box/HDIG domain-containing protein 3038774 2793971 DVU2933 Desulfovibrio vulgaris str. Hildenborough response regulator/sensory box/HDIG domain-containing protein YP_012145.1 3037398 D 882 CDS YP_012146.1 46581338 2793972 3038778..3040196 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 3040196 2793972 DVU2934 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_012146.1 3038778 D 882 CDS YP_012147.1 46581339 2793973 3040354..3041106 1 NC_002937.3 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 3041106 gpmA 2793973 gpmA Desulfovibrio vulgaris str. Hildenborough phosphoglyceromutase YP_012147.1 3040354 D 882 CDS YP_012148.1 46581340 2793974 complement(3041186..3041329) 1 NC_002937.3 hypothetical protein 3041329 2793974 DVU2936 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012148.1 3041186 R 882 CDS YP_012149.1 46581341 2793975 3041307..3042662 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00515; TPR domain/response regulator receiver domain-containing protein 3042662 2793975 DVU2937 Desulfovibrio vulgaris str. Hildenborough TPR domain/response regulator receiver domain-containing protein YP_012149.1 3041307 D 882 CDS YP_012150.1 46581342 2793976 3042908..3044080 1 NC_002937.3 identified by similarity to OMNI:NTL01NS1696; match to protein family HMM PF01837; hypothetical protein 3044080 2793976 DVU2938 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012150.1 3042908 D 882 CDS YP_012151.1 46581343 2796490 3044106..3044993 1 NC_002937.3 identified by similarity to OMNI:NTL01TE1240; hypothetical protein 3044993 2796490 DVU2939 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012151.1 3044106 D 882 CDS YP_012152.1 46581344 2796491 3045121..3045390 1 NC_002937.3 hypothetical protein 3045390 2796491 DVU2940 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012152.1 3045121 D 882 CDS YP_012153.1 46581345 2796492 3045522..3045821 1 NC_002937.3 identified by similarity to OMNI:NTL01XC2985; hypothetical protein 3045821 2796492 DVU2941 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012153.1 3045522 D 882 CDS YP_012154.1 46581346 2796493 3045921..3047213 1 NC_002937.3 identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase 3047213 purB 2796493 purB Desulfovibrio vulgaris str. Hildenborough adenylosuccinate lyase YP_012154.1 3045921 D 882 CDS YP_012155.1 46581347 2796494 3047225..3047785 1 NC_002937.3 identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336; orotate phosphoribosyltransferase 3047785 pyrE 2796494 pyrE Desulfovibrio vulgaris str. Hildenborough orotate phosphoribosyltransferase YP_012155.1 3047225 D 882 CDS YP_012156.1 46581348 2796495 3047845..3049134 1 NC_002937.3 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 3049134 2796495 DVU2944 Desulfovibrio vulgaris str. Hildenborough ErfK/YbiS/YcfS/YnhG family protein YP_012156.1 3047845 D 882 CDS YP_012157.1 46581349 2796496 3049173..3050030 1 NC_002937.3 identified by similarity to GP:13926258; hypothetical protein 3050030 2796496 DVU2945 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012157.1 3049173 D 882 CDS YP_012158.1 46581350 2796497 complement(3050421..3050663) 1 NC_002937.3 hypothetical protein 3050663 2796497 DVU2946 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012158.1 3050421 R 882 CDS YP_012159.1 46581351 2796498 complement(3050747..3052816) 1 NC_002937.3 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 3052816 2796498 DVU2947 Desulfovibrio vulgaris str. Hildenborough anaerobic ribonucleoside triphosphate reductase YP_012159.1 3050747 R 882 CDS YP_012160.1 46581352 2796499 3053486..3054334 1 NC_002937.3 identified by match to protein family HMM PF00669; flagellin N-terminal domain-containing protein 3054334 2796499 DVU2948 Desulfovibrio vulgaris str. Hildenborough flagellin N-terminal domain-containing protein YP_012160.1 3053486 D 882 CDS YP_012161.1 46581353 2796500 3054538..3054891 1 NC_002937.3 identified by similarity to OMNI:NTL01SM01900; match to protein family HMM PF04342; hypothetical protein 3054891 2796500 DVU2949 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012161.1 3054538 D 882 CDS YP_012162.1 46581354 2796502 3056772..3058484 1 NC_002937.3 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3058484 glnS 2796502 glnS Desulfovibrio vulgaris str. Hildenborough glutaminyl-tRNA synthetase YP_012162.1 3056772 D 882 CDS YP_012163.1 46581355 2796503 complement(3058744..3059781) 1 NC_002937.3 identified by similarity to OMNI:NTL01PF2043; match to protein family HMM PF00892; hypothetical protein 3059781 2796503 DVU2952 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012163.1 3058744 R 882 CDS YP_012164.1 46581356 2796504 3060107..3061669 1 NC_002937.3 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 3061669 2796504 DVU2953 Desulfovibrio vulgaris str. Hildenborough GntR family transcriptional regulator YP_012164.1 3060107 D 882 CDS YP_012165.1 46581357 2796507 3062063..3063742 1 NC_002937.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3063742 2796507 DVU2954 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_012165.1 3062063 D 882 CDS YP_012166.1 46581358 2796508 complement(3063944..3064087) 1 NC_002937.3 hypothetical protein 3064087 2796508 DVU2955 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012166.1 3063944 R 882 CDS YP_012167.1 46581359 2796270 complement(3064162..3065199) 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 3065199 2796270 DVU2956 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_012167.1 3064162 R 882 CDS YP_012168.1 46581360 2796271 3065309..3065449 1 NC_002937.3 hypothetical protein 3065449 2796271 DVU2957 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012168.1 3065309 D 882 CDS YP_012169.1 46581361 2796272 3065446..3066444 1 NC_002937.3 identified by match to protein family HMM PF01925; hypothetical protein 3066444 2796272 DVU2958 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012169.1 3065446 D 882 CDS YP_012170.1 46581362 2796273 3066457..3066873 1 NC_002937.3 identified by similarity to SP:O28710; hypothetical protein 3066873 2796273 DVU2959 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012170.1 3066457 D 882 CDS YP_012171.1 46581363 2796274 3066958..3068382 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 3068382 2796274 DVU2960 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_012171.1 3066958 D 882 CDS YP_012172.1 46581364 2796275 3068386..3068733 1 NC_002937.3 hypothetical protein 3068733 2796275 DVU2961 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012172.1 3068386 D 882 CDS YP_012173.1 46581365 2796276 3068730..3070463 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3070463 2796276 DVU2962 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_012173.1 3068730 D 882 CDS YP_012174.1 46581366 2796277 3070467..3070853 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 3070853 2796277 DVU2963 Desulfovibrio vulgaris str. Hildenborough response regulator YP_012174.1 3070467 D 882 CDS YP_012175.1 46581367 2796278 3070855..3071514 1 NC_002937.3 hypothetical protein 3071514 2796278 DVU2964 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012175.1 3070855 D 882 CDS YP_012176.1 46581368 2796279 3071634..3071933 1 NC_002937.3 hypothetical protein 3071933 2796279 DVU2965 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012176.1 3071634 D 882 CDS YP_012177.1 46581369 2796280 3072132..3072587 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 3072587 2796280 DVU2966 Desulfovibrio vulgaris str. Hildenborough response regulator YP_012177.1 3072132 D 882 CDS YP_012178.1 46581370 2796281 3072601..3073725 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 3073725 2796281 DVU2967 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase/response regulator YP_012178.1 3072601 D 882 CDS YP_012179.1 46581371 2796282 complement(3073821..3075017) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 3075017 2796282 DVU2968 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase/response regulator YP_012179.1 3073821 R 882 CDS YP_012180.1 46581372 2796283 complement(3075266..3077251) 1 NC_002937.3 identified by similarity to SP:P27550; match to protein family HMM PF00501; acetoacetyl-CoA synthase 3077251 2796283 DVU2969 Desulfovibrio vulgaris str. Hildenborough acetoacetyl-CoA synthase YP_012180.1 3075266 R 882 CDS YP_012181.1 46581373 2796284 3077476..3080172 1 NC_002937.3 identified by match to protein family HMM PF00583; match to protein family HMM PF02629; match to protein family HMM TIGR01369; acetyltransferase 3080172 2796284 DVU2970 Desulfovibrio vulgaris str. Hildenborough acetyltransferase YP_012181.1 3077476 D 882 CDS YP_012182.1 46581374 2796285 complement(3080514..3081425) 1 NC_002937.3 identified by match to protein family HMM PF01501; glycosyl transferase family protein 3081425 2796285 DVU2971 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_012182.1 3080514 R 882 CDS YP_012183.1 46581375 2796286 complement(3081579..3082178) 1 NC_002937.3 chemotaxis protein CheD 3082178 2796286 DVU2972 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheD YP_012183.1 3081579 R 882 CDS YP_012184.1 46581376 2796287 complement(3082212..3082487) 1 NC_002937.3 identified by similarity to SP:Q06607; match to protein family HMM PF00216; integration host factor subunit beta 3082487 2796287 DVU2973 Desulfovibrio vulgaris str. Hildenborough integration host factor subunit beta YP_012184.1 3082212 R 882 CDS YP_012185.1 46581377 2796288 complement(3082568..3082747) 1 NC_002937.3 hypothetical protein 3082747 2796288 DVU2974 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012185.1 3082568 R 882 CDS YP_012186.1 46581378 2796289 complement(3082753..3083793) 1 NC_002937.3 identified by match to protein family HMM PF04307; hydrolase 3083793 2796289 DVU2975 Desulfovibrio vulgaris str. Hildenborough hydrolase YP_012186.1 3082753 R 882 CDS YP_012187.1 46581379 2796290 complement(3084007..3085119) 1 NC_002937.3 identified by similarity to OMNI:NT01MC0831; match to protein family HMM PF04463; hypothetical protein 3085119 2796290 DVU2976 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012187.1 3084007 R 882 CDS YP_012188.1 46581380 2796291 3085118..3085288 1 NC_002937.3 hypothetical protein 3085288 2796291 DVU2977 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012188.1 3085118 D 882 CDS YP_012189.1 46581381 2796292 3085457..3086089 1 NC_002937.3 identified by similarity to OMNI:NTL02EC4785; match to protein family HMM PF00702; HAD superfamily hydrolase 3086089 2796292 DVU2978 Desulfovibrio vulgaris str. Hildenborough HAD superfamily hydrolase YP_012189.1 3085457 D 882 CDS YP_012190.1 46581382 2796293 3086199..3086852 1 NC_002937.3 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 3086852 2796293 DVU2979 Desulfovibrio vulgaris str. Hildenborough phosphatidylserine decarboxylase YP_012190.1 3086199 D 882 CDS YP_012191.1 46581383 2796294 3086915..3087664 1 NC_002937.3 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 3087664 pssA 2796294 pssA Desulfovibrio vulgaris str. Hildenborough CDP-diacylglycerol--serine O-phosphatidyltransferase YP_012191.1 3086915 D 882 CDS YP_012192.1 46581384 2796295 3087841..3089370 1 NC_002937.3 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 3089370 leuA 2796295 leuA Desulfovibrio vulgaris str. Hildenborough 2-isopropylmalate synthase YP_012192.1 3087841 D 882 CDS YP_012193.1 46581385 2796296 3089372..3090631 1 NC_002937.3 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 3090631 2796296 DVU2982 Desulfovibrio vulgaris str. Hildenborough 3-isopropylmalate dehydratase large subunit YP_012193.1 3089372 D 882 CDS YP_012194.1 46581386 2796297 3090649..3091152 1 NC_002937.3 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 3091152 leuD 2796297 leuD Desulfovibrio vulgaris str. Hildenborough 3-isopropylmalate dehydratase small subunit YP_012194.1 3090649 D 882 CDS YP_012195.1 46581387 2796298 3091155..3092162 1 NC_002937.3 identified by similarity to OMNI:NTL01AA00614; match to protein family HMM PF01937; hypothetical protein 3092162 2796298 DVU2984 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012195.1 3091155 D 882 CDS YP_012196.1 46581388 2796299 3092192..3093265 1 NC_002937.3 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3093265 leuB 2796299 leuB Desulfovibrio vulgaris str. Hildenborough 3-isopropylmalate dehydrogenase YP_012196.1 3092192 D 882 CDS YP_012197.1 46581389 2796300 complement(3093874..3094296) 1 NC_002937.3 identified by similarity to SP:P23855; match to protein family HMM PF04024; phage shock protein C 3094296 pspC 2796300 pspC Desulfovibrio vulgaris str. Hildenborough phage shock protein C YP_012197.1 3093874 R 882 CDS YP_012198.1 46581390 2796301 complement(3094293..3094592) 1 NC_002937.3 hypothetical protein 3094592 2796301 DVU2987 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012198.1 3094293 R 882 CDS YP_012199.1 46581391 2796302 complement(3094671..3095336) 1 NC_002937.3 identified by match to protein family HMM PF04012; phage shock protein A 3095336 pspA 2796302 pspA Desulfovibrio vulgaris str. Hildenborough phage shock protein A YP_012199.1 3094671 R 882 CDS YP_012200.1 46581392 2796303 3095502..3096647 1 NC_002937.3 identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM TIGR01199; psp operon transcriptional activator 3096647 pspF 2796303 pspF Desulfovibrio vulgaris str. Hildenborough psp operon transcriptional activator YP_012200.1 3095502 D 882 CDS YP_012201.1 46581393 2796304 3096677..3098629 1 NC_002937.3 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein 3098629 moeA 2796304 moeA Desulfovibrio vulgaris str. Hildenborough molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein YP_012201.1 3096677 D 882 CDS YP_012202.1 46581394 2796305 3098789..3099880 1 NC_002937.3 hypothetical protein 3099880 2796305 DVU2991 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012202.1 3098789 D 882 CDS YP_012203.1 46581395 2796306 3099901..3101517 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3101517 2796306 DVU2992 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_012203.1 3099901 D 882 CDS YP_012204.1 46581396 2796307 3101540..3104203 1 NC_002937.3 identified by match to protein family HMM PF00534; match to protein family HMM PF00535; glycosyl transferase group 1/2 family protein 3104203 2796307 DVU2993 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 1/2 family protein YP_012204.1 3101540 D 882 CDS YP_012205.1 46581397 2796308 3104200..3105228 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3105228 2796308 DVU2994 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_012205.1 3104200 D 882 CDS YP_012206.1 46581398 2796309 complement(3105499..3106662) 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 3106662 2796309 DVU2995 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_012206.1 3105499 R 882 CDS YP_012207.1 46581399 2796310 complement(3106817..3107740) 1 NC_002937.3 identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 3107740 2796310 DVU2996 Desulfovibrio vulgaris str. Hildenborough NAD-dependent epimerase/dehydratase YP_012207.1 3106817 R 882 CDS YP_012208.1 46581400 2796311 complement(3107742..3108518) 1 NC_002937.3 hypothetical protein 3108518 2796311 DVU2997 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012208.1 3107742 R 882 CDS YP_012209.1 46581401 2796312 complement(3108548..3109882) 1 NC_002937.3 hypothetical protein 3109882 2796312 DVU2998 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012209.1 3108548 R 882 CDS YP_012210.1 46581402 2796313 complement(3109908..3110735) 1 NC_002937.3 identified by match to protein family HMM PF00551; methionyl-tRNA formyltransferase 3110735 2796313 DVU2999 Desulfovibrio vulgaris str. Hildenborough methionyl-tRNA formyltransferase YP_012210.1 3109908 R 882 CDS YP_012211.1 46581403 2793713 complement(3110900..3112090) 1 NC_002937.3 hypothetical protein 3112090 2793713 DVU3000 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012211.1 3110900 R 882 CDS YP_012212.1 46581404 2793714 complement(3112087..3112884) 1 NC_002937.3 identified by similarity to OMNI:CC3255; hypothetical protein 3112884 2793714 DVU3001 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012212.1 3112087 R 882 CDS YP_012213.1 46581405 2793715 complement(3112881..3114029) 1 NC_002937.3 hypothetical protein 3114029 2793715 DVU3002 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012213.1 3112881 R 882 CDS YP_012214.1 46581406 2793716 complement(3114085..3115197) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3115197 2793716 DVU3003 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_012214.1 3114085 R 882 CDS YP_012215.1 46581407 2793717 3115376..3117250 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3117250 2793717 DVU3004 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_012215.1 3115376 D 882 CDS YP_012216.1 46581408 2793718 3117261..3118295 1 NC_002937.3 identified by match to protein family HMM PF01041; aminotransferase 3118295 2793718 DVU3005 Desulfovibrio vulgaris str. Hildenborough aminotransferase YP_012216.1 3117261 D 882 CDS YP_012217.1 46581409 2793719 3118306..3119667 1 NC_002937.3 identified by similarity to SP:P39626; similarity to GP:10179847; match to protein family HMM PF02348; polysaccharide biosynthesis protein/methyltransferase 3119667 2793719 DVU3006 Desulfovibrio vulgaris str. Hildenborough polysaccharide biosynthesis protein/methyltransferase YP_012217.1 3118306 D 882 CDS YP_012218.1 46581410 2793720 3119670..3120893 1 NC_002937.3 hypothetical protein 3120893 2793720 DVU3007 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012218.1 3119670 D 882 CDS YP_012219.1 46581411 2793721 3120890..3121966 1 NC_002937.3 identified by match to protein family HMM PF03102; NeuB family protein 3121966 2793721 DVU3008 Desulfovibrio vulgaris str. Hildenborough NeuB family protein YP_012219.1 3120890 D 882 CDS YP_012220.1 46581412 2793722 3121963..3122946 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3122946 2793722 DVU3009 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_012220.1 3121963 D 882 CDS YP_012221.1 46581413 2793723 3122956..3124134 1 NC_002937.3 identified by similarity to GP:22095313; match to protein family HMM PF01041; aminotransferase 3124134 2793723 DVU3010 Desulfovibrio vulgaris str. Hildenborough aminotransferase YP_012221.1 3122956 D 882 CDS YP_012222.1 46581414 2793724 3124139..3124933 1 NC_002937.3 identified by similarity to OMNI:CC2858; hypothetical protein 3124933 2793724 DVU3011 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012222.1 3124139 D 882 CDS YP_012223.1 46581415 2793725 3125034..3126833 1 NC_002937.3 hypothetical protein 3126833 2793725 DVU3012 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012223.1 3125034 D 882 CDS YP_012224.1 46581416 2793726 3126886..3128592 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3128592 2793726 DVU3013 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_012224.1 3126886 D 882 CDS YP_012225.1 46581417 2793727 3128580..3130673 1 NC_002937.3 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase 3130673 2793727 DVU3014 Desulfovibrio vulgaris str. Hildenborough asparagine synthetase YP_012225.1 3128580 D 882 CDS YP_012226.1 46581418 2793728 3130655..3131221 1 NC_002937.3 identified by similarity to OMNI:NT01MC1323; hypothetical protein 3131221 2793728 DVU3015 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012226.1 3130655 D 882 CDS YP_012227.1 46581419 2793729 complement(3131336..3132781) 1 NC_002937.3 identified by match to protein family HMM PF02310; match to protein family HMM PF04055; B12 binding /radical SAM domain-containing protein 3132781 2793729 DVU3016 Desulfovibrio vulgaris str. Hildenborough B12 binding /radical SAM domain-containing protein YP_012227.1 3131336 R 882 CDS YP_012228.2 304569733 2793730 complement(3132813..3133844) 1 NC_002937.3 identified by similarity to OMNI:CT0759; hypothetical protein 3133844 2793730 DVU3017 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012228.2 3132813 R 882 CDS YP_012229.1 46581421 2793731 complement(3133841..3134974) 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3134974 2793731 DVU3018 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_012229.1 3133841 R 882 CDS YP_012230.1 46581422 2793732 complement(3135056..3136513) 1 NC_002937.3 identified by similarity to SP:O58549; match to protein family HMM PF02310; match to protein family HMM PF04055; radical SAM protein 3136513 2793732 DVU3019 Desulfovibrio vulgaris str. Hildenborough radical SAM protein YP_012230.1 3135056 R 882 CDS YP_012231.1 46581423 2793733 complement(3136549..3136917) 1 NC_002937.3 hypothetical protein 3136917 2793733 DVU3020 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012231.1 3136549 R 882 CDS YP_012232.1 46581424 2793734 complement(3137085..3138455) 1 NC_002937.3 identified by match to protein family HMM PF01966; HDIG domain-containing protein 3138455 2793734 DVU3021 Desulfovibrio vulgaris str. Hildenborough HDIG domain-containing protein YP_012232.1 3137085 R 882 CDS YP_012233.1 46581425 2793735 3138517..3141936 1 NC_002937.3 identified by similarity to OMNI:NTL01SMA00507; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 3141936 2793735 DVU3022 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_012233.1 3138517 D 882 CDS YP_012234.1 46581426 2796440 3141933..3143357 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 3143357 2796440 DVU3023 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent DNA-binding response regulator YP_012234.1 3141933 D 882 CDS YP_012235.1 46581427 2796441 3143615..3143782 1 NC_002937.3 hypothetical protein 3143782 2796441 DVU3024 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012235.1 3143615 D 882 CDS YP_012236.1 46581428 2796442 3143767..3147414 1 NC_002937.3 identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate-ferredoxin oxidoreductase 3147414 poR 2796442 poR Desulfovibrio vulgaris str. Hildenborough pyruvate-ferredoxin oxidoreductase YP_012236.1 3143767 D 882 CDS YP_012237.1 46581429 2796443 3147520..3149232 1 NC_002937.3 identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3149232 2796443 DVU3026 Desulfovibrio vulgaris str. Hildenborough L-lactate permease YP_012237.1 3147520 D 882 CDS YP_012238.1 46581430 2796444 3149407..3150792 1 NC_002937.3 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 3150792 glcD 2796444 glcD Desulfovibrio vulgaris str. Hildenborough glycolate oxidase subunit GlcD YP_012238.1 3149407 D 882 CDS YP_012239.1 46581431 2796445 3150824..3152092 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding protein 3152092 2796445 DVU3028 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_012239.1 3150824 D 882 CDS YP_012240.1 46581432 2796446 3152216..3154330 1 NC_002937.3 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3154330 pta 2796446 pta Desulfovibrio vulgaris str. Hildenborough phosphate acetyltransferase YP_012240.1 3152216 D 882 CDS YP_012241.1 46581433 2796447 3154356..3155564 1 NC_002937.3 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 3155564 ackA 2796447 ackA Desulfovibrio vulgaris str. Hildenborough acetate kinase YP_012241.1 3154356 D 882 CDS YP_012242.1 46581434 2796448 3155664..3156755 1 NC_002937.3 identified by similarity to OMNI:NTL01HS00726; hypothetical protein 3156755 2796448 DVU3031 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012242.1 3155664 D 882 CDS YP_012243.1 46581435 2796449 3156752..3157381 1 NC_002937.3 identified by similarity to OMNI:HP0137; match to protein family HMM PF02589; hypothetical protein 3157381 2796449 DVU3032 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012243.1 3156752 D 882 CDS YP_012244.1 46581436 2796450 3157385..3159538 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding protein 3159538 2796450 DVU3033 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_012244.1 3157385 D 882 CDS YP_012245.1 46581437 2796451 complement(3159611..3159712) 1 NC_002937.3 hypothetical protein 3159712 2796451 DVU3034 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012245.1 3159611 R 882 CDS YP_012246.2 304569734 2796452 3159730..3161541 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 3161541 2796452 DVU3035 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_012246.2 3159730 D 882 CDS YP_012247.1 46581439 2796453 complement(3161724..3162716) 1 NC_002937.3 identified by similarity to OMNI:NTL01SS01164; match to protein family HMM PF04015; hypothetical protein 3162716 2796453 DVU3036 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012247.1 3161724 R 882 CDS YP_012248.1 46581440 2796454 complement(3162817..3163689) 1 NC_002937.3 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 3163689 2796454 DVU3037 Desulfovibrio vulgaris str. Hildenborough rhodanese-like domain-containing protein YP_012248.1 3162817 R 882 CDS YP_012249.1 46581441 2796455 3163688..3163792 1 NC_002937.3 hypothetical protein 3163792 2796455 DVU3038 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012249.1 3163688 D 882 CDS YP_012250.1 46581442 2796457 complement(3164143..3164868) 1 NC_002937.3 identified by similarity to GP:9949385; hypothetical protein 3164868 2796457 DVU3039 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012250.1 3164143 R 882 CDS YP_012251.1 46581443 2796458 complement(3164991..3165224) 1 NC_002937.3 hypothetical protein 3165224 2796458 DVU3040 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012251.1 3164991 R 882 CDS YP_012252.1 46581444 2796459 3165232..3165513 1 NC_002937.3 identified by similarity to SP:P00120; match to protein family HMM PF00034; cytochrome c553 3165513 2796459 DVU3041 Desulfovibrio vulgaris str. Hildenborough cytochrome c553 YP_012252.1 3165232 D 882 CDS YP_012253.1 46581445 2796460 3165553..3165789 1 NC_002937.3 identified by match to protein family HMM PF06004; lipoprotein 3165789 2796460 DVU3042 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012253.1 3165553 D 882 CDS YP_012254.1 46581446 2796461 3166018..3167049 1 NC_002937.3 hypothetical protein 3167049 2796461 DVU3043 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012254.1 3166018 D 882 CDS YP_012255.1 46581447 2796070 complement(3167178..3168059) 1 NC_002937.3 hypothetical protein 3168059 2796070 DVU3044 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012255.1 3167178 R 882 CDS YP_012256.1 46581448 2796071 3168343..3171210 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 3171210 2796071 DVU3045 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_012256.1 3168343 D 882 CDS YP_012257.1 46581449 2796072 complement(3171427..3172533) 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 3172533 2796072 DVU3046 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_012257.1 3171427 R 882 CDS YP_012258.1 46581450 2796073 complement(3173003..3173950) 1 NC_002937.3 identified by match to protein family HMM PF01063; class IV aminotransferase 3173950 2796073 DVU3047 Desulfovibrio vulgaris str. Hildenborough class IV aminotransferase YP_012258.1 3173003 R 882 CDS YP_012259.1 46581451 2796074 complement(3174209..3175258) 1 NC_002937.3 identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 3175258 asd 2796074 asd Desulfovibrio vulgaris str. Hildenborough aspartate-semialdehyde dehydrogenase YP_012259.1 3174209 R 882 CDS YP_012260.1 46581452 2796075 complement(3175305..3175718) 1 NC_002937.3 hemerythrin family protein 3175718 2796075 DVU3049 Desulfovibrio vulgaris str. Hildenborough hemerythrin family protein YP_012260.1 3175305 R 882 CDS YP_012261.1 46581453 2796076 complement(3175842..3176276) 1 NC_002937.3 identified by match to protein family HMM PF04657; hypothetical protein 3176276 2796076 DVU3050 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012261.1 3175842 R 882 CDS YP_012262.1 46581454 2796077 complement(3176498..3176887) 1 NC_002937.3 identified by similarity to SP:P08337; match to protein family HMM PF00293; mutator mutT protein 3176887 mutT 2796077 mutT Desulfovibrio vulgaris str. Hildenborough mutator mutT protein YP_012262.1 3176498 R 882 CDS YP_012263.1 46581455 2796078 complement(3176887..3178866) 1 NC_002937.3 identified by similarity to SP:P45535; match to protein family HMM PF00005; ABC transporter ATP-binding protein 3178866 2796078 DVU3052 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_012263.1 3176887 R 882 CDS YP_012264.1 46581456 2796079 complement(3179101..3179994) 1 NC_002937.3 hypothetical protein 3179994 2796079 DVU3053 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012264.1 3179101 R 882 CDS YP_012265.1 46581457 2796080 3180365..3181459 1 NC_002937.3 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3181459 2796080 DVU3054 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_012265.1 3180365 D 882 CDS YP_012266.1 46581458 2796081 3181505..3182974 1 NC_002937.3 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 3182974 2796081 DVU3055 Desulfovibrio vulgaris str. Hildenborough ribonuclease YP_012266.1 3181505 D 882 CDS YP_012267.1 46581459 2796082 3182977..3183630 1 NC_002937.3 identified by similarity to OMNI:TM0731; hypothetical protein 3183630 2796082 DVU3056 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012267.1 3182977 D 882 CDS YP_012268.1 46581460 2796083 3183675..3185168 1 NC_002937.3 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00539; oxygen-independent coproporphyrinogen III oxidase 3185168 2796083 DVU3057 Desulfovibrio vulgaris str. Hildenborough oxygen-independent coproporphyrinogen III oxidase YP_012268.1 3183675 D 882 CDS YP_012269.1 46581461 2796084 3185165..3188836 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 3188836 2796084 DVU3058 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_012269.1 3185165 D 882 CDS YP_012270.1 46581462 2796085 complement(3189021..3190487) 1 NC_002937.3 identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 3190487 ftsY 2796085 ftsY Desulfovibrio vulgaris str. Hildenborough signal recognition particle-docking protein FtsY YP_012270.1 3189021 R 882 CDS YP_012271.1 46581463 2796086 complement(3190466..3190630) 1 NC_002937.3 hypothetical protein 3190630 2796086 DVU3060 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012271.1 3190466 R 882 CDS YP_012272.1 46581464 2796087 3190672..3192966 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 3192966 2796087 DVU3061 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_012272.1 3190672 D 882 CDS YP_012273.1 46581465 2796088 complement(3193322..3196564) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase/response regulator 3196564 2796088 DVU3062 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase/response regulator YP_012273.1 3193322 R 882 CDS YP_012274.1 46581466 2796089 complement(3196686..3198374) 1 NC_002937.3 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 3198374 mviN-2 2796089 mviN-2 Desulfovibrio vulgaris str. Hildenborough integral membrane protein MviN YP_012274.1 3196686 R 882 CDS YP_012275.1 46581467 2796090 3198740..3200470 1 NC_002937.3 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 3200470 2796090 DVU3064 Desulfovibrio vulgaris str. Hildenborough sensory box protein YP_012275.1 3198740 D 882 CDS YP_012276.1 46581468 2796091 complement(3200598..3202250) 1 NC_002937.3 activates fatty acids by binding to coenzyme A; AMP-binding protein 3202250 2796091 DVU3065 Desulfovibrio vulgaris str. Hildenborough AMP-binding protein YP_012276.1 3200598 R 882 CDS YP_012277.1 46581469 2796417 complement(3202265..3202834) 1 NC_002937.3 identified by match to protein family HMM PF01381; DNA-binding protein 3202834 2796417 DVU3066 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_012277.1 3202265 R 882 CDS YP_012278.1 46581470 2796418 3202929..3205448 1 NC_002937.3 identified by similarity to SP:O07451; match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 3205448 hypF 2796418 hypF Desulfovibrio vulgaris str. Hildenborough [NiFe] hydrogenase maturation protein HypF YP_012278.1 3202929 D 882 CDS YP_012279.1 46581471 2796419 3205678..3208161 1 NC_002937.3 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; GAF domain/sensory box/EAL domain-containing protein 3208161 2796419 DVU3068 Desulfovibrio vulgaris str. Hildenborough GAF domain/sensory box/EAL domain-containing protein YP_012279.1 3205678 D 882 CDS YP_012280.1 46581472 2796420 complement(3208579..3209901) 1 NC_002937.3 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 3209901 2796420 DVU3069 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012280.1 3208579 R 882 CDS YP_012281.1 46581473 2796421 complement(3209898..3210326) 1 NC_002937.3 identified by similarity to OMNI:NMB1337; match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 3210326 2796421 DVU3070 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012281.1 3209898 R 882 CDS YP_012282.1 46581474 2796422 complement(3210408..3213971) 1 NC_002937.3 identified by similarity to SP:P52075; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913; oxidoreductase 3213971 2796422 DVU3071 Desulfovibrio vulgaris str. Hildenborough oxidoreductase YP_012282.1 3210408 R 882 CDS YP_012283.1 46581475 2796423 complement(3214138..3216072) 1 NC_002937.3 identified by similarity to SP:P76224; match to protein family HMM PF00528; ABC transporter permease 3216072 2796423 DVU3072 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_012283.1 3214138 R 882 CDS YP_012284.1 46581476 2796424 3216311..3217222 1 NC_002937.3 identified by similarity to OMNI:HI1195; hypothetical protein 3217222 2796424 DVU3073 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012284.1 3216311 D 882 CDS YP_012285.1 46581477 2796425 complement(3217533..3218420) 1 NC_002937.3 identified by similarity to OMNI:VC0081; match to protein family HMM PF00892; hypothetical protein 3218420 2796425 DVU3074 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012285.1 3217533 R 882 CDS YP_012286.1 46581478 2796426 3218488..3218760 1 NC_002937.3 hypothetical protein 3218760 2796426 DVU3075 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012286.1 3218488 D 882 CDS YP_012287.1 46581479 2796427 3218992..3219573 1 NC_002937.3 identified by similarity to OMNI:NTL01OI0852; hypothetical protein 3219573 2796427 DVU3076 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012287.1 3218992 D 882 CDS YP_012288.1 46581480 2796428 3220001..3220762 1 NC_002937.3 identified by match to protein family HMM PF00578; AhpC/TSA family protein 3220762 2796428 DVU3077 Desulfovibrio vulgaris str. Hildenborough AhpC/TSA family protein YP_012288.1 3220001 D 882 CDS YP_012289.1 46581481 2796429 complement(3221253..3221465) 1 NC_002937.3 hypothetical protein 3221465 2796429 DVU3078 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012289.1 3221253 R 882 CDS YP_012290.1 46581482 2796430 3221509..3222111 1 NC_002937.3 identified by match to protein family HMM PF00903; glyoxalase 3222111 2796430 DVU3079 Desulfovibrio vulgaris str. Hildenborough glyoxalase YP_012290.1 3221509 D 882 CDS YP_012291.1 46581483 2796431 3222373..3222771 1 NC_002937.3 identified by similarity to SP:P55323; transcriptional regulator 3222771 2796431 DVU3080 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_012291.1 3222373 D 882 CDS YP_012292.1 46581484 2796432 3223039..3223941 1 NC_002937.3 identified by similarity to GP:9946975; match to protein family HMM PF00892; hypothetical protein 3223941 2796432 DVU3081 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012292.1 3223039 D 882 CDS YP_012293.1 46581485 2796433 complement(3224282..3226045) 1 NC_002937.3 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 3226045 2796433 DVU3082 Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein YP_012293.1 3224282 R 882 CDS YP_012294.1 46581486 2796434 3226286..3226462 1 NC_002937.3 hypothetical protein 3226462 2796434 DVU3083 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012294.1 3226286 D 882 CDS YP_012295.1 46581487 2796435 complement(3226516..3226902) 1 NC_002937.3 identified by similarity to SP:Q04152; transcriptional regulator 3226902 2796435 DVU3084 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_012295.1 3226516 R 882 CDS YP_012296.1 46581488 2796436 3227074..3227319 1 NC_002937.3 hypothetical protein 3227319 2796436 DVU3085 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012296.1 3227074 D 882 CDS YP_012297.1 46581489 2796437 3227312..3229135 1 NC_002937.3 identified by match to protein family HMM PF01656; match to protein family HMM TIGR00379; cobyrinic acid a,c-diamide synthase 3229135 cobB-2 2796437 cobB-2 Desulfovibrio vulgaris str. Hildenborough cobyrinic acid a,c-diamide synthase YP_012297.1 3227312 D 882 CDS YP_012298.1 46581490 2796438 3229144..3229785 1 NC_002937.3 identified by similarity to GP:15826199; match to protein family HMM PF02570; precorrin-8X methylmutase 3229785 cobH 2796438 cobH Desulfovibrio vulgaris str. Hildenborough precorrin-8X methylmutase YP_012298.1 3229144 D 882 CDS YP_012299.1 46581491 2796439 3229894..3231627 1 NC_002937.3 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 3231627 2796439 DVU3088 Desulfovibrio vulgaris str. Hildenborough DEAD/DEAH box helicase YP_012299.1 3229894 D 882 CDS YP_012300.1 46581492 2795961 3231596..3232102 1 NC_002937.3 hypothetical protein 3232102 2795961 DVU3089 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012300.1 3231596 D 882 CDS YP_012301.1 46581493 2795962 complement(3232587..3233792) 1 NC_002937.3 identified by match to protein family HMM PF03349; OMPP1/FadL/TodX family outer membrane protein 3233792 2795962 DVU3090 Desulfovibrio vulgaris str. Hildenborough OMPP1/FadL/TodX family outer membrane protein YP_012301.1 3232587 R 882 CDS YP_012302.1 46581494 2795963 3234266..3235612 1 NC_002937.3 identified by similarity to SP:Q9A4C3; hypothetical protein 3235612 2795963 DVU3091 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012302.1 3234266 D 882 CDS YP_012303.1 46581495 2795964 3235827..3236474 1 NC_002937.3 hypothetical protein 3236474 2795964 DVU3092 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012303.1 3235827 D 882 CDS YP_012304.1 46581496 2795965 complement(3236518..3236745) 1 NC_002937.3 identified by match to protein family HMM PF00301; rubredoxin-like protein 3236745 rdl 2795965 rdl Desulfovibrio vulgaris str. Hildenborough rubredoxin-like protein YP_012304.1 3236518 R 882 CDS YP_012305.1 46581497 2795966 complement(3236764..3237339) 1 NC_002937.3 identified by similarity to SP:P24931; match to protein family HMM PF02915; rubrerythrin 3237339 rr 2795966 rr Desulfovibrio vulgaris str. Hildenborough rubrerythrin YP_012305.1 3236764 R 882 CDS YP_012306.1 46581498 2795967 complement(3237384..3237770) 1 NC_002937.3 identified by match to protein family HMM PF01475; Fur family transcriptional regulator 3237770 2795967 DVU3095 Desulfovibrio vulgaris str. Hildenborough Fur family transcriptional regulator YP_012306.1 3237384 R 882 CDS YP_012307.1 46581499 2795968 complement(3237800..3238051) 1 NC_002937.3 hypothetical protein 3238051 2795968 DVU3096 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012307.1 3237800 R 882 CDS YP_012308.1 46581500 2795969 complement(3238096..3239415) 1 NC_002937.3 identified by match to protein family HMM PF02321; outer membrane efflux protein 3239415 2795969 DVU3097 Desulfovibrio vulgaris str. Hildenborough outer membrane efflux protein YP_012308.1 3238096 R 882 CDS YP_012309.1 46581501 2795970 3239552..3239755 1 NC_002937.3 hypothetical protein 3239755 2795970 DVU3098 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012309.1 3239552 D 882 CDS YP_012310.1 46581502 2795971 3239799..3240491 1 NC_002937.3 identified by similarity to SP:P05828; match to protein family HMM PF01618; tolQ protein 3240491 tolQ-2 2795971 tolQ-2 Desulfovibrio vulgaris str. Hildenborough tolQ protein YP_012310.1 3239799 D 882 CDS YP_012311.1 46581503 2795972 3240501..3240920 1 NC_002937.3 identified by match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 3240920 2795972 DVU3100 Desulfovibrio vulgaris str. Hildenborough biopolymer ExbD/TolR family transporter YP_012311.1 3240501 D 882 CDS YP_012312.1 46581504 2795973 3240930..3241955 1 NC_002937.3 identified by similarity to GP:14595286; match to protein family HMM TIGR01352; tonB protein 3241955 2795973 DVU3101 Desulfovibrio vulgaris str. Hildenborough tonB protein YP_012312.1 3240930 D 882 CDS YP_012313.1 46581505 2795974 3242061..3242648 1 NC_002937.3 hypothetical protein 3242648 2795974 DVU3102 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012313.1 3242061 D 882 CDS YP_012314.1 46581506 2795975 3242725..3244095 1 NC_002937.3 tolB protein 3244095 2795975 DVU3103 Desulfovibrio vulgaris str. Hildenborough tolB protein YP_012314.1 3242725 D 882 CDS YP_012315.1 46581507 2795976 3244295..3244798 1 NC_002937.3 identified by similarity to SP:P07176; match to protein family HMM PF00691; peptidoglycan-associated lipoprotein 3244798 2795976 DVU3104 Desulfovibrio vulgaris str. Hildenborough peptidoglycan-associated lipoprotein YP_012315.1 3244295 D 882 CDS YP_012316.1 46581508 2796597 3252382..3252507 1 NC_002937.3 hypothetical protein 3252507 2796597 DVU3105 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012316.1 3252382 D 882 CDS YP_012317.1 46581509 2796598 complement(3252660..3254627) 1 NC_002937.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3254627 2796598 DVU3106 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_012317.1 3252660 R 882 CDS YP_012318.1 46581510 2796599 3254902..3256671 1 NC_002937.3 identified by match to protein family HMM PF00034; cytochrome c family protein 3256671 2796599 DVU3107 Desulfovibrio vulgaris str. Hildenborough cytochrome c family protein YP_012318.1 3254902 D 882 CDS YP_012319.1 46581511 2796600 complement(3256819..3258246) 1 NC_002937.3 identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 3258246 nhaC-2 2796600 nhaC-2 Desulfovibrio vulgaris str. Hildenborough Na+/H+ antiporter NhaC YP_012319.1 3256819 R 882 CDS YP_012320.1 46581512 2796601 complement(3258440..3258640) 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 3258640 2796601 DVU3109 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_012320.1 3258440 R 882 CDS YP_012321.1 46581513 2796602 complement(3258680..3260401) 1 NC_002937.3 identified by match to protein family HMM PF00890; match to protein family HMM PF02910; oxidoreductase 3260401 2796602 DVU3110 Desulfovibrio vulgaris str. Hildenborough oxidoreductase YP_012321.1 3258680 R 882 CDS YP_012322.1 46581514 2796603 complement(3260648..3261382) 1 NC_002937.3 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 3261382 2796603 DVU3111 Desulfovibrio vulgaris str. Hildenborough Crp/FNR family transcriptional regulator YP_012322.1 3260648 R 882 CDS YP_012323.1 46581515 2796604 complement(3261505..3262308) 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 3262308 2796604 DVU3112 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012323.1 3261505 R 882 CDS YP_012324.1 46581516 2796605 complement(3262359..3263486) 1 NC_002937.3 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 3263486 carA 2796605 carA Desulfovibrio vulgaris str. Hildenborough carbamoyl phosphate synthase small subunit YP_012324.1 3262359 R 882 CDS YP_012325.1 46581517 2796606 complement(3263483..3264241) 1 NC_002937.3 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 3264241 kdsB 2796606 kdsB Desulfovibrio vulgaris str. Hildenborough 3-deoxy-manno-octulosonate cytidylyltransferase YP_012325.1 3263483 R 882 CDS YP_012326.1 46581518 2796607 complement(3264367..3264600) 1 NC_002937.3 hypothetical protein 3264600 2796607 DVU3115 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012326.1 3264367 R 882 CDS YP_012327.1 46581519 2796608 3264560..3266149 1 NC_002937.3 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3266149 prfC 2796608 prfC Desulfovibrio vulgaris str. Hildenborough peptide chain release factor 3 YP_012327.1 3264560 D 882 CDS YP_012328.1 46581520 2796609 3266432..3267016 1 NC_002937.3 hypothetical protein 3267016 2796609 DVU3117 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012328.1 3266432 D 882 CDS YP_012329.1 46581521 2796610 complement(3267144..3267449) 1 NC_002937.3 identified by similarity to OMNI:NTL03CP0853; hypothetical protein 3267449 2796610 DVU3118 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012329.1 3267144 R 882 CDS YP_012330.1 46581522 2796611 3267630..3269324 1 NC_002937.3 identified by match to protein family HMM PF00501; AMP-binding protein 3269324 2796611 DVU3119 Desulfovibrio vulgaris str. Hildenborough AMP-binding protein YP_012330.1 3267630 D 882 CDS YP_012331.1 46581523 2796612 complement(3269441..3269584) 1 NC_002937.3 hypothetical protein 3269584 2796612 DVU3120 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012331.1 3269441 R 882 CDS YP_012332.1 46581524 2796613 complement(3269775..3270905) 1 NC_002937.3 identified by match to protein family HMM PF00266; class V aminotransferase 3270905 2796613 DVU3121 Desulfovibrio vulgaris str. Hildenborough class V aminotransferase YP_012332.1 3269775 R 882 CDS YP_012333.1 46581525 2796614 complement(3270935..3271042) 1 NC_002937.3 hypothetical protein 3271042 2796614 DVU3122 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012333.1 3270935 R 882 CDS YP_012334.1 46581526 2796615 complement(3271204..3271899) 1 NC_002937.3 identified by match to protein family HMM PF01966; HD domain-containing protein 3271899 2796615 DVU3123 Desulfovibrio vulgaris str. Hildenborough HD domain-containing protein YP_012334.1 3271204 R 882 CDS YP_012335.1 46581527 2796616 complement(3271877..3272008) 1 NC_002937.3 hypothetical protein 3272008 2796616 DVU3124 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012335.1 3271877 R 882 CDS YP_012336.1 46581528 2796617 3272173..3272793 1 NC_002937.3 lipoprotein 3272793 2796617 DVU3125 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012336.1 3272173 D 882 CDS YP_012337.1 46581529 2796619 3274537..3276168 1 NC_002937.3 identified by similarity to SP:P43671; paraquat-inducible protein B 3276168 pqiB 2796619 pqiB Desulfovibrio vulgaris str. Hildenborough paraquat-inducible protein B YP_012337.1 3274537 D 882 CDS YP_012338.1 46581530 2793977 3276158..3276775 1 NC_002937.3 identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886; lipoprotein 3276775 2793977 DVU3128 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012338.1 3276158 D 882 CDS YP_012339.1 46581531 2793978 3276789..3276956 1 NC_002937.3 hypothetical protein 3276956 2793978 DVU3129 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012339.1 3276789 D 882 CDS YP_012340.1 46581532 2793979 3277032..3277244 1 NC_002937.3 hypothetical protein 3277244 2793979 DVU3130 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012340.1 3277032 D 882 CDS YP_012341.1 46581533 2793980 3277423..3278370 1 NC_002937.3 identified by match to protein family HMM PF04198; transcriptional regulator 3278370 2793980 DVU3131 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator YP_012341.1 3277423 D 882 CDS YP_012342.1 46581534 2793981 3278367..3280007 1 NC_002937.3 identified by similarity to SP:P18158; match to protein family HMM PF01266; glycerol-3-phosphate dehydrogenase 3280007 2793981 DVU3132 Desulfovibrio vulgaris str. Hildenborough glycerol-3-phosphate dehydrogenase YP_012342.1 3278367 D 882 CDS YP_012343.1 46581535 2793982 3280115..3280870 1 NC_002937.3 identified by similarity to SP:P18156; match to protein family HMM PF00230; glycerol uptake facilitator protein 3280870 2793982 DVU3133 Desulfovibrio vulgaris str. Hildenborough glycerol uptake facilitator protein YP_012343.1 3280115 D 882 CDS YP_012344.1 46581536 2793983 3281017..3282510 1 NC_002937.3 identified by similarity to PIR:JE0391; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 3282510 glpK 2793983 glpK Desulfovibrio vulgaris str. Hildenborough glycerol kinase YP_012344.1 3281017 D 882 CDS YP_012345.1 46581537 2793984 complement(3282773..3283381) 1 NC_002937.3 identified by match to protein family HMM PF02525; flavodoxin-like fold domain-containing protein 3283381 2793984 DVU3135 Desulfovibrio vulgaris str. Hildenborough flavodoxin-like fold domain-containing protein YP_012345.1 3282773 R 882 CDS YP_012346.1 46581538 2793985 complement(3283437..3284093) 1 NC_002937.3 identified by match to protein family HMM PF00881; nitroreductase 3284093 2793985 DVU3136 Desulfovibrio vulgaris str. Hildenborough nitroreductase YP_012346.1 3283437 R 882 CDS YP_012347.1 46581539 2793986 3284721..3285497 1 NC_002937.3 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3285497 fabG 2793986 fabG Desulfovibrio vulgaris str. Hildenborough 3-ketoacyl-ACP reductase YP_012347.1 3284721 D 882 CDS YP_012348.1 46581540 2793987 complement(3286320..3286424) 1 NC_002937.3 hypothetical protein 3286424 2793987 DVU3138 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012348.1 3286320 R 882 CDS YP_012349.1 46581541 2793988 3286423..3287199 1 NC_002937.3 identified by match to protein family HMM PF00497; solute-binding family 1 protein 3287199 2793988 DVU3139 Desulfovibrio vulgaris str. Hildenborough solute-binding family 1 protein YP_012349.1 3286423 D 882 CDS YP_012350.1 46581542 2793990 complement(3287614..3289227) 1 NC_002937.3 identified by similarity to GP:2801417; match to protein family HMM PF02563; capsular polysaccharide transport protein 3289227 2793990 DVU3140 Desulfovibrio vulgaris str. Hildenborough capsular polysaccharide transport protein YP_012350.1 3287614 R 882 CDS YP_012351.1 46581543 2793991 complement(3289514..3289894) 1 NC_002937.3 lipoprotein 3289894 2793991 DVU3141 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012351.1 3289514 R 882 CDS YP_012352.1 46581544 2793992 complement(3290118..3291821) 1 NC_002937.3 identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 3291821 2793992 DVU3142 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_012352.1 3290118 R 882 CDS YP_012353.1 46581545 2793993 3292123..3293712 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; iron-sulfur cluster-binding protein 3293712 2793993 DVU3143 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_012353.1 3292123 D 882 CDS YP_012354.1 46581546 2793994 3293742..3295370 1 NC_002937.3 cytochrome c family protein 3295370 2793994 DVU3144 Desulfovibrio vulgaris str. Hildenborough cytochrome c family protein YP_012354.1 3293742 D 882 CDS YP_012355.1 46581547 2793995 3295380..3295988 1 NC_002937.3 identified by match to protein family HMM PF01292; hydrogenase, b-type cytochrome subunit 3295988 2793995 DVU3145 Desulfovibrio vulgaris str. Hildenborough hydrogenase, b-type cytochrome subunit YP_012355.1 3295380 D 882 CDS YP_012356.1 46581548 2793996 complement(3296540..3297313) 1 NC_002937.3 hypothetical protein 3297313 2793996 DVU3146 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012356.1 3296540 R 882 CDS YP_012357.1 46581549 2793997 complement(3297454..3298716) 1 NC_002937.3 identified by similarity to GP:3309583; match to protein family HMM PF00300; match to protein family HMM PF01591; 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 3298716 2793997 DVU3147 Desulfovibrio vulgaris str. Hildenborough 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase YP_012357.1 3297454 R 882 CDS YP_012358.1 46581550 2793998 complement(3299005..3300516) 1 NC_002937.3 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3300516 malQ 2793998 malQ Desulfovibrio vulgaris str. Hildenborough 4-alpha-glucanotransferase YP_012358.1 3299005 R 882 CDS YP_012359.1 46581551 2795854 complement(3300725..3301615) 1 NC_002937.3 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 3301615 sppA 2795854 sppA Desulfovibrio vulgaris str. Hildenborough signal peptide peptidase SppA, 36K type YP_012359.1 3300725 R 882 CDS YP_012360.1 46581552 2795855 complement(3301599..3303332) 1 NC_002937.3 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 3303332 rpsA 2795855 rpsA Desulfovibrio vulgaris str. Hildenborough 30S ribosomal protein S1 YP_012360.1 3301599 R 882 CDS YP_012361.1 46581553 2795856 complement(3303547..3304839) 1 NC_002937.3 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein 3304839 2795856 DVU3151 Desulfovibrio vulgaris str. Hildenborough tRNA modifying protein YP_012361.1 3303547 R 882 CDS YP_012362.1 46581554 2795857 3304918..3306579 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 3306579 2795857 DVU3152 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_012362.1 3304918 D 882 CDS YP_012363.1 46581555 2795858 3307015..3307134 1 NC_002937.3 hypothetical protein 3307134 2795858 DVU3153 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012363.1 3307015 D 882 CDS YP_012364.1 46581556 2795859 3307131..3307754 1 NC_002937.3 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3307754 2795859 DVU3154 Desulfovibrio vulgaris str. Hildenborough deoxyribonucleotide triphosphate pyrophosphatase YP_012364.1 3307131 D 882 CDS YP_012365.1 46581557 2795860 3308230..3311121 1 NC_002937.3 identified by similarity to GP:887858; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF01814; methyl-accepting chemotaxis protein DcrH 3311121 dcrH 2795860 dcrH Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein DcrH YP_012365.1 3308230 D 882 CDS YP_012366.1 46581558 2795861 3311611..3313434 1 NC_002937.3 identified by similarity to SP:Q56213; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) 3313434 glmS 2795861 glmS Desulfovibrio vulgaris str. Hildenborough glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_012366.1 3311611 D 882 CDS YP_012367.1 46581559 2795862 3313723..3315165 1 NC_002937.3 identified by similarity to OMNI:NTL03PA03238; hypothetical protein 3315165 2795862 DVU3157 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012367.1 3313723 D 882 CDS YP_012368.1 46581560 2795863 3315162..3316049 1 NC_002937.3 identified by match to protein family HMM PF04333; vacJ lipoprotein 3316049 2795863 DVU3158 Desulfovibrio vulgaris str. Hildenborough vacJ lipoprotein YP_012368.1 3315162 D 882 CDS YP_012369.1 46581561 2795864 complement(3316170..3317162) 1 NC_002937.3 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3317162 gpsA 2795864 gpsA Desulfovibrio vulgaris str. Hildenborough NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_012369.1 3316170 R 882 CDS YP_012370.1 46581562 2795865 3317193..3317312 1 NC_002937.3 hypothetical protein 3317312 2795865 DVU3160 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012370.1 3317193 D 882 CDS YP_012371.1 46581563 2795866 3317454..3318503 1 NC_002937.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3318503 2795866 DVU3161 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_012371.1 3317454 D 882 CDS YP_012372.1 46581564 2795867 3318606..3319901 1 NC_002937.3 identified by similarity to SP:P10904; match to protein family HMM PF01547; ABC transporter periplasmic substrate-binding protein 3319901 2795867 DVU3162 Desulfovibrio vulgaris str. Hildenborough ABC transporter periplasmic substrate-binding protein YP_012372.1 3318606 D 882 CDS YP_012373.1 46581565 2795868 3319975..3320856 1 NC_002937.3 identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528; ABC transporter permease 3320856 2795868 DVU3163 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_012373.1 3319975 D 882 CDS YP_012374.1 46581566 2795869 3320853..3321686 1 NC_002937.3 identified by similarity to OMNI:TM0598; match to protein family HMM PF00528; ABC transporter permease 3321686 2795869 DVU3164 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_012374.1 3320853 D 882 CDS YP_012375.1 46581567 2795870 3321693..3322553 1 NC_002937.3 identified by similarity to GP:19886751; hypothetical protein 3322553 2795870 DVU3165 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012375.1 3321693 D 882 CDS YP_012376.1 46581568 2795871 3322606..3323262 1 NC_002937.3 alanyl-tRNA synthetase 3323262 2795871 DVU3166 Desulfovibrio vulgaris str. Hildenborough alanyl-tRNA synthetase YP_012376.1 3322606 D 882 CDS YP_012377.1 46581569 2795872 3323356..3323838 1 NC_002937.3 identified by similarity to SP:Q52522; heme biosynthesis protein 3323838 2795872 DVU3167 Desulfovibrio vulgaris str. Hildenborough heme biosynthesis protein YP_012377.1 3323356 D 882 CDS YP_012378.1 46581570 2795873 3323906..3325177 1 NC_002937.3 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3325177 hemL 2795873 hemL Desulfovibrio vulgaris str. Hildenborough glutamate-1-semialdehyde aminotransferase YP_012378.1 3323906 D 882 CDS YP_012379.1 46581571 2795874 3325298..3326494 1 NC_002937.3 identified by similarity to SP:Q05631; match to protein family HMM PF01890; cobalamin biosynthesis protein CbiG 3326494 cbiG 2795874 cbiG Desulfovibrio vulgaris str. Hildenborough cobalamin biosynthesis protein CbiG YP_012379.1 3325298 D 882 CDS YP_012380.1 46581572 2795875 3326787..3327641 1 NC_002937.3 identified by similarity to SP:P21640; match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3b C17-methyltransferase 3327641 cobJ 2795875 cobJ Desulfovibrio vulgaris str. Hildenborough precorrin-3b C17-methyltransferase YP_012380.1 3326787 D 882 CDS YP_012381.1 46581573 2795876 3327925..3328314 1 NC_002937.3 identified by similarity to SP:P00131; match to protein family HMM PF02085; cytochrome c3 3328314 2795876 DVU3171 Desulfovibrio vulgaris str. Hildenborough cytochrome c3 YP_012381.1 3327925 D 882 CDS YP_012382.1 46581574 2795877 3328360..3330507 1 NC_002937.3 hypothetical protein 3330507 2795877 DVU3172 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012382.1 3328360 D 882 CDS YP_012383.1 46581575 2793823 3330703..3330879 1 NC_002937.3 hypothetical protein 3330879 2793823 DVU3173 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012383.1 3330703 D 882 CDS YP_012384.1 46581576 2793824 3330876..3331652 1 NC_002937.3 identified by similarity to SP:P27851; match to protein family HMM PF01209; ubiquinone/menaquinone biosynthesis methlytransferase UbiE 3331652 ubiE 2793824 ubiE Desulfovibrio vulgaris str. Hildenborough ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_012384.1 3330876 D 882 CDS YP_012385.1 46581577 2793825 complement(3331919..3332122) 1 NC_002937.3 hypothetical protein 3332122 2793825 DVU3175 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012385.1 3331919 R 882 CDS YP_012386.1 46581578 2793826 3332256..3333578 1 NC_002937.3 identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose/GDP-mannose dehydrogenase 3333578 2793826 DVU3176 Desulfovibrio vulgaris str. Hildenborough UDP-glucose/GDP-mannose dehydrogenase YP_012386.1 3332256 D 882 CDS YP_012387.1 46581579 2793827 3333673..3333822 1 NC_002937.3 hypothetical protein 3333822 2793827 DVU3177 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012387.1 3333673 D 882 CDS YP_012388.1 46581580 2793828 3333906..3334529 1 NC_002937.3 identified by similarity to OMNI:NTL02SC4137; hypothetical protein 3334529 2793828 DVU3178 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012388.1 3333906 D 882 CDS YP_012389.1 46581581 2793829 3334550..3335515 1 NC_002937.3 identified by similarity to SP:P19641; match to protein family HMM PF00348; octaprenyl-diphosphate synthase 3335515 ispB 2793829 ispB Desulfovibrio vulgaris str. Hildenborough octaprenyl-diphosphate synthase YP_012389.1 3334550 D 882 CDS YP_012390.1 46581582 2793830 3335547..3338048 1 NC_002937.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3338048 2793830 DVU3180 Desulfovibrio vulgaris str. Hildenborough diguanylate cyclase YP_012390.1 3335547 D 882 CDS YP_012391.2 304569735 2793831 3338134..3341115 1 NC_002937.3 identified by similarity to SP:P12042; match to protein family HMM PF00586; match to protein family HMM PF02769; phosphoribosylformylglycinamidine synthase II 3341115 purL 2793831 purL Desulfovibrio vulgaris str. Hildenborough phosphoribosylformylglycinamidine synthase II YP_012391.2 3338134 D 882 CDS YP_012392.1 46581584 2793832 3341577..3343586 1 NC_002937.3 identified by similarity to SP:P35841; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein DcrA 3343586 dcrA 2793832 dcrA Desulfovibrio vulgaris str. Hildenborough methyl-accepting chemotaxis protein DcrA YP_012392.1 3341577 D 882 CDS YP_012393.1 46581585 2793833 3343927..3344307 1 NC_002937.3 identified by similarity to SP:P20418; match to protein family HMM PF01880; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332; desulfoferrodoxin 3344307 rbO 2793833 rbO Desulfovibrio vulgaris str. Hildenborough desulfoferrodoxin YP_012393.1 3343927 D 882 CDS YP_012394.1 46581586 2793834 3344324..3344482 1 NC_002937.3 identified by similarity to SP:P00269; match to protein family HMM PF00301; rubredoxin 3344482 2793834 DVU3184 Desulfovibrio vulgaris str. Hildenborough rubredoxin YP_012394.1 3344324 D 882 CDS YP_012395.1 46581587 2793835 3344614..3345822 1 NC_002937.3 identified by similarity to SP:Q9F0J6; match to protein family HMM PF00258; match to protein family HMM PF00753; rubredoxin-oxygen oxidoreductase 3345822 roO 2793835 roO Desulfovibrio vulgaris str. Hildenborough rubredoxin-oxygen oxidoreductase YP_012395.1 3344614 D 882 CDS YP_012396.1 46581588 2793836 complement(3346150..3346971) 1 NC_002937.3 hypothetical protein 3346971 2793836 DVU3186 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012396.1 3346150 R 882 CDS YP_012397.1 46581589 2793837 3347046..3347333 1 NC_002937.3 identified by similarity to SP:P02341; similarity to SP:P08821; similarity to GP:14028719; match to protein family HMM PF00216; DNA-binding protein HU 3347333 hup-4 2793837 hup-4 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein HU YP_012397.1 3347046 D 882 CDS YP_012398.1 46581590 2793838 complement(3347482..3348201) 1 NC_002937.3 identified by match to protein family HMM PF00877; NLP/P60 family protein 3348201 2793838 DVU3188 Desulfovibrio vulgaris str. Hildenborough NLP/P60 family protein YP_012398.1 3347482 R 882 CDS YP_012399.1 46581591 2793839 complement(3348264..3349559) 1 NC_002937.3 identified by match to protein family HMM PF01189; NOL1/NOP2/sun family protein 3349559 2793839 DVU3189 Desulfovibrio vulgaris str. Hildenborough NOL1/NOP2/sun family protein YP_012399.1 3348264 R 882 CDS YP_012400.1 46581592 2793840 3349691..3351358 1 NC_002937.3 hypothetical protein 3351358 2793840 DVU3190 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012400.1 3349691 D 882 CDS YP_012401.1 46581593 2793841 3351436..3352608 1 NC_002937.3 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; ribosomal large subunit pseudouridine synthase C 3352608 rluC 2793841 rluC Desulfovibrio vulgaris str. Hildenborough ribosomal large subunit pseudouridine synthase C YP_012401.1 3351436 D 882 CDS YP_012402.1 46581594 2793842 3352605..3353765 1 NC_002937.3 identified by match to protein family HMM PF00534; glycosyl transferase family protein 3353765 2793842 DVU3192 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase family protein YP_012402.1 3352605 D 882 CDS YP_012403.1 46581595 2793843 complement(3354015..3355115) 1 NC_002937.3 identified by match to protein family HMM TIGR01764; DNA-binding protein 3355115 2793843 DVU3193 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_012403.1 3354015 R 882 CDS YP_012404.1 46581596 2793844 3355181..3356656 1 NC_002937.3 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 3356656 engA 2793844 engA Desulfovibrio vulgaris str. Hildenborough GTP-binding protein EngA YP_012404.1 3355181 D 882 CDS YP_012405.1 46581597 2793845 complement(3356741..3358129) 1 NC_002937.3 identified by similarity to OMNI:NTL01CJ01286; lipoprotein 3358129 2793845 DVU3195 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012405.1 3356741 R 882 CDS YP_012406.1 46581598 2793846 complement(3358126..3359277) 1 NC_002937.3 identified by match to protein family HMM TIGR01409; twin-arginine translocation pathway signal sequence domain-containing protein 3359277 2793846 DVU3196 Desulfovibrio vulgaris str. Hildenborough twin-arginine translocation pathway signal sequence domain-containing protein YP_012406.1 3358126 R 882 CDS YP_012407.1 46581599 2793847 3359552..3360481 1 NC_002937.3 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3360481 ilvE 2793847 ilvE Desulfovibrio vulgaris str. Hildenborough branched-chain amino acid aminotransferase YP_012407.1 3359552 D 882 CDS YP_012408.1 46581600 2793848 3360636..3362486 1 NC_002937.3 identified by similarity to SP:P06710; match to protein family HMM PF00004; DNA polymerase III subunits gamma/tau 3362486 2793848 DVU3198 Desulfovibrio vulgaris str. Hildenborough DNA polymerase III subunits gamma/tau YP_012408.1 3360636 D 882 CDS YP_012409.1 46581601 2796197 3362483..3362794 1 NC_002937.3 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 3362794 2796197 DVU3199 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012409.1 3362483 D 882 CDS YP_012410.1 46581602 2796198 3362805..3363410 1 NC_002937.3 identified by match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR 3363410 recR 2796198 recR Desulfovibrio vulgaris str. Hildenborough recombination protein RecR YP_012410.1 3362805 D 882 CDS YP_012411.1 46581603 2796199 3363813..3364874 1 NC_002937.3 hypothetical protein 3364874 2796199 DVU3201 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012411.1 3363813 D 882 CDS YP_012412.1 46581604 2796200 3365112..3365948 1 NC_002937.3 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 3365948 2796200 DVU3202 Desulfovibrio vulgaris str. Hildenborough TatD family hydrolase YP_012412.1 3365112 D 882 CDS YP_012413.2 304569736 2796201 complement(3366263..3367225) 1 NC_002937.3 DNA polymerase III subunit delta' 3367225 2796201 DVU3203 Desulfovibrio vulgaris str. Hildenborough DNA polymerase III subunit delta' YP_012413.2 3366263 R 882 CDS YP_012414.1 46581606 2796202 complement(3367232..3368512) 1 NC_002937.3 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3368512 purA 2796202 purA Desulfovibrio vulgaris str. Hildenborough adenylosuccinate synthetase YP_012414.1 3367232 R 882 CDS YP_012415.1 46581607 2796203 3368755..3370200 1 NC_002937.3 identified by match to protein family HMM PF01464; transglycosylase 3370200 2796203 DVU3205 Desulfovibrio vulgaris str. Hildenborough transglycosylase YP_012415.1 3368755 D 882 CDS YP_003858626.1 304569753 9714839 complement(3370117..3370482) 1 NC_002937.3 hypothetical protein 3370482 9714839 DVU4012 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858626.1 3370117 R 882 CDS YP_012416.1 46581608 2796204 3370503..3372035 1 NC_002937.3 identified by similarity to SP:P12048; match to protein family HMM PF01808; phosphoribosylaminoimidazolecarboxamide formyltransferase 3372035 2796204 DVU3206 Desulfovibrio vulgaris str. Hildenborough phosphoribosylaminoimidazolecarboxamide formyltransferase YP_012416.1 3370503 D 882 CDS YP_012417.1 46581609 2796205 3372044..3374140 1 NC_002937.3 identified by match to protein family HMM PF00773; RNB-like family protein 3374140 2796205 DVU3207 Desulfovibrio vulgaris str. Hildenborough RNB-like family protein YP_012417.1 3372044 D 882 CDS YP_012418.1 46581610 2796206 3374162..3375145 1 NC_002937.3 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein 3375145 2796206 DVU3208 Desulfovibrio vulgaris str. Hildenborough membrane protein YP_012418.1 3374162 D 882 CDS YP_012419.1 46581611 2796207 3375196..3375291 1 NC_002937.3 hypothetical protein 3375291 2796207 DVU3209 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012419.1 3375196 D 882 CDS YP_012420.1 46581612 2796208 3375314..3376726 1 NC_002937.3 identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260; threonine synthase 3376726 thrC 2796208 thrC Desulfovibrio vulgaris str. Hildenborough threonine synthase YP_012420.1 3375314 D 882 CDS YP_012421.1 46581613 2796209 complement(3377282..3377470) 1 NC_002937.3 hypothetical protein 3377470 2796209 DVU3211 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012421.1 3377282 R 882 CDS YP_012422.1 46581614 2796210 3377699..3379408 1 NC_002937.3 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase 3379408 2796210 DVU3212 Desulfovibrio vulgaris str. Hildenborough pyridine nucleotide-disulfide oxidoreductase YP_012422.1 3377699 D 882 CDS YP_012423.1 46581615 2796211 3379729..3380013 1 NC_002937.3 hypothetical protein 3380013 2796211 DVU3213 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012423.1 3379729 D 882 CDS YP_012424.1 46581616 2796212 complement(3380281..3382935) 1 NC_002937.3 identified by similarity to SP:P42850; match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase 3382935 2796212 DVU3214 Desulfovibrio vulgaris str. Hildenborough phosphoenolpyruvate synthase YP_012424.1 3380281 R 882 CDS YP_012425.1 46581617 2796213 complement(3382952..3383317) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 3383317 2796213 DVU3215 Desulfovibrio vulgaris str. Hildenborough response regulator YP_012425.1 3382952 R 882 CDS YP_012426.1 46581618 2796214 complement(3383335..3385032) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3385032 2796214 DVU3216 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_012426.1 3383335 R 882 CDS YP_012427.1 46581619 2796215 complement(3385718..3386146) 1 NC_002937.3 hypothetical protein 3386146 2796215 DVU3217 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012427.1 3385718 R 882 CDS YP_012428.1 46581620 2796216 complement(3386398..3387018) 1 NC_002937.3 identified by similarity to SP:P21369; match to protein family HMM PF00857; pyrazinamidase/nicotinamidase 3387018 pncA 2796216 pncA Desulfovibrio vulgaris str. Hildenborough pyrazinamidase/nicotinamidase YP_012428.1 3386398 R 882 CDS YP_012429.2 304569737 2796217 complement(3387054..3388256) 1 NC_002937.3 hypothetical protein 3388256 2796217 DVU3219 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012429.2 3387054 R 882 CDS YP_012430.1 46581622 2796218 complement(3388327..3389706) 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 3389706 2796218 DVU3220 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_012430.1 3388327 R 882 CDS YP_012431.1 46581623 2796219 complement(3389703..3391229) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3391229 2796219 DVU3221 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_012431.1 3389703 R 882 CDS YP_012432.1 46581624 2796220 complement(3391257..3392600) 1 NC_002937.3 identified by match to protein family HMM PF00342; glucose-6-phosphate isomerase 3392600 pgi 2796220 pgi Desulfovibrio vulgaris str. Hildenborough glucose-6-phosphate isomerase YP_012432.1 3391257 R 882 CDS YP_012433.1 46581625 2796221 complement(3392687..3393859) 1 NC_002937.3 identified by similarity to SP:P23034; match to protein family HMM PF00155; aspartate aminotransferase 3393859 aspB 2796221 aspB Desulfovibrio vulgaris str. Hildenborough aspartate aminotransferase YP_012433.1 3392687 R 882 CDS YP_012434.1 46581626 2793874 3394126..3394854 1 NC_002937.3 identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230; sugar fermentation stimulation protein 3394854 sfsA 2793874 sfsA Desulfovibrio vulgaris str. Hildenborough sugar fermentation stimulation protein YP_012434.1 3394126 D 882 CDS YP_012435.1 46581627 2793875 complement(3394894..3395316) 1 NC_002937.3 hypothetical protein 3395316 2793875 DVU3225 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012435.1 3394894 R 882 CDS YP_012436.1 46581628 2793876 complement(3395327..3395656) 1 NC_002937.3 hypothetical protein 3395656 2793876 DVU3226 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012436.1 3395327 R 882 CDS YP_012437.2 304569738 2793877 complement(3395658..3396341) 1 NC_002937.3 identified by match to protein family HMM PF03748; flagellar basal body-associated protein 3396341 2793877 DVU3227 Desulfovibrio vulgaris str. Hildenborough flagellar basal body-associated protein YP_012437.2 3395658 R 882 CDS YP_012438.1 46581630 2793878 complement(3396417..3396797) 1 NC_002937.3 identified by similarity to SP:Q51455; match to protein family HMM PF00072; chemotaxis protein CheY 3396797 cheY-3 2793878 cheY-3 Desulfovibrio vulgaris str. Hildenborough chemotaxis protein CheY YP_012438.1 3396417 R 882 CDS YP_012439.1 46581631 2793879 complement(3396820..3397617) 1 NC_002937.3 identified by similarity to SP:P31804; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma factor for flagellar operon FliA 3397617 fliA 2793879 fliA Desulfovibrio vulgaris str. Hildenborough RNA polymerase sigma factor for flagellar operon FliA YP_012439.1 3396820 R 882 CDS YP_012440.1 46581632 2793880 complement(3397571..3398398) 1 NC_002937.3 identified by similarity to OMNI:NTL03PA01455; match to protein family HMM PF00991; flagellar synthesis regulator FleN 3398398 2793880 DVU3230 Desulfovibrio vulgaris str. Hildenborough flagellar synthesis regulator FleN YP_012440.1 3397571 R 882 CDS YP_012441.1 46581633 2793881 complement(3398398..3399495) 1 NC_002937.3 identified by similarity to SP:Q01960; match to protein family HMM PF00448; flagellar biosynthesis protein FlhF 3399495 2793881 DVU3231 Desulfovibrio vulgaris str. Hildenborough flagellar biosynthesis protein FlhF YP_012441.1 3398398 R 882 CDS YP_012442.1 46581634 2793882 complement(3399495..3401606) 1 NC_002937.3 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 3401606 flhA 2793882 flhA Desulfovibrio vulgaris str. Hildenborough flagellar biosynthesis protein FlhA YP_012442.1 3399495 R 882 CDS YP_012443.1 46581635 2793883 complement(3401682..3402755) 1 NC_002937.3 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 3402755 flhB 2793883 flhB Desulfovibrio vulgaris str. Hildenborough flagellar biosynthesis protein FlhB YP_012443.1 3401682 R 882 CDS YP_012444.1 46581636 2793884 complement(3402880..3403671) 1 NC_002937.3 identified by similarity to SP:P35537; match to protein family HMM PF01311; match to protein family HMM TIGR01400; flagellar biosynthetic protein FliR 3403671 2793884 DVU3234 Desulfovibrio vulgaris str. Hildenborough flagellar biosynthetic protein FliR YP_012444.1 3402880 R 882 CDS YP_012445.1 46581637 2793885 3403776..3404378 1 NC_002937.3 identified by similarity to SP:P12048; match to protein family HMM PF02142; IMP cyclohydrolase 3404378 2793885 DVU3235 Desulfovibrio vulgaris str. Hildenborough IMP cyclohydrolase YP_012445.1 3403776 D 882 CDS YP_012446.1 46581638 2793886 3404744..3406387 1 NC_002937.3 identified by similarity to SP:P25519; match to protein family HMM TIGR00231; GTP-binding protein HflX 3406387 hflX 2793886 hflX Desulfovibrio vulgaris str. Hildenborough GTP-binding protein HflX YP_012446.1 3404744 D 882 CDS YP_012447.2 304569739 2793887 complement(3406865..3409276) 1 NC_002937.3 identified by similarity to SP:P23538; match to protein family HMM PF00391; phosphoenolpyruvate synthase 3409276 2793887 DVU3237 Desulfovibrio vulgaris str. Hildenborough phosphoenolpyruvate synthase YP_012447.2 3406865 R 882 CDS YP_012448.1 46581640 2793888 complement(3409566..3409970) 1 NC_002937.3 identified by match to protein family HMM PF00072; response regulator 3409970 2793888 DVU3238 Desulfovibrio vulgaris str. Hildenborough response regulator YP_012448.1 3409566 R 882 CDS YP_012449.1 46581641 2793889 complement(3410195..3410860) 1 NC_002937.3 identified by match to protein family HMM PF01569; PAP2 family protein 3410860 2793889 DVU3239 Desulfovibrio vulgaris str. Hildenborough PAP2 family protein YP_012449.1 3410195 R 882 CDS YP_012450.1 46581642 2793890 complement(3410878..3411867) 1 NC_002937.3 identified by match to protein family HMM PF01551; M24/M37 family peptidase 3411867 2793890 DVU3240 Desulfovibrio vulgaris str. Hildenborough M24/M37 family peptidase YP_012450.1 3410878 R 882 CDS YP_012451.1 46581643 2793891 complement(3411881..3412627) 1 NC_002937.3 identified by similarity to OMNI:NTL03CP0990; match to protein family HMM PF01171; hypothetical protein 3412627 2793891 DVU3241 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012451.1 3411881 R 882 CDS YP_012452.1 46581644 2793892 3413030..3413263 1 NC_002937.3 identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 3413263 rpoZ 2793892 rpoZ Desulfovibrio vulgaris str. Hildenborough DNA-directed RNA polymerase subunit omega YP_012452.1 3413030 D 882 CDS YP_012453.1 46581645 2793893 3413276..3414406 1 NC_002937.3 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3414406 dnaJ 2793893 dnaJ Desulfovibrio vulgaris str. Hildenborough chaperone protein DnaJ YP_012453.1 3413276 D 882 CDS YP_012454.1 46581646 2793894 complement(3414449..3414784) 1 NC_002937.3 hypothetical protein 3414784 2793894 DVU3244 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012454.1 3414449 R 882 CDS YP_012455.1 46581647 2793895 3414783..3415274 1 NC_002937.3 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3415274 greA 2793895 greA Desulfovibrio vulgaris str. Hildenborough transcription elongation factor GreA YP_012455.1 3414783 D 882 CDS YP_012456.1 46581648 2793896 3415791..3417416 1 NC_002937.3 identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 3417416 2793896 DVU3246 Desulfovibrio vulgaris str. Hildenborough RND efflux system outer membrane lipoprotein YP_012456.1 3415791 D 882 CDS YP_012457.1 46581649 2793849 3417458..3418627 1 NC_002937.3 identified by similarity to GP:1707644; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 3418627 2793849 DVU3247 Desulfovibrio vulgaris str. Hildenborough RND family efflux transporter MFP subunit YP_012457.1 3417458 D 882 CDS YP_012458.1 46581650 2793850 3418656..3421799 1 NC_002937.3 identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915; AcrB/AcrD/AcrF family protein 3421799 2793850 DVU3248 Desulfovibrio vulgaris str. Hildenborough AcrB/AcrD/AcrF family protein YP_012458.1 3418656 D 882 CDS YP_012459.1 46581651 2793851 3421807..3422487 1 NC_002937.3 identified by similarity to OMNI:NTL01ST1561; lipoprotein 3422487 2793851 DVU3249 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012459.1 3421807 D 882 CDS YP_012460.1 46581652 2793853 complement(3423100..3423801) 1 NC_002937.3 hypothetical protein 3423801 2793853 DVU3250 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012460.1 3423100 R 882 CDS YP_012461.1 46581653 2793854 complement(3424152..3424691) 1 NC_002937.3 identified by similarity to OMNI:NTL01SS02725; match to protein family HMM PF04982; HPP family membrane protein 3424691 2793854 DVU3251 Desulfovibrio vulgaris str. Hildenborough HPP family membrane protein YP_012461.1 3424152 R 882 CDS YP_012462.1 46581654 2793855 3424702..3424953 1 NC_002937.3 hypothetical protein 3424953 2793855 DVU3252 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012462.1 3424702 D 882 CDS YP_012463.1 46581655 2793856 3425041..3426306 1 NC_002937.3 identified by similarity to SP:P76085; phenylacetate-coenzyme A ligase 3426306 2793856 DVU3253 Desulfovibrio vulgaris str. Hildenborough phenylacetate-coenzyme A ligase YP_012463.1 3425041 D 882 CDS YP_012464.1 46581656 2793857 3426297..3427661 1 NC_002937.3 identified by match to protein family HMM PF00595; PDZ domain-containing protein 3427661 2793857 DVU3254 Desulfovibrio vulgaris str. Hildenborough PDZ domain-containing protein YP_012464.1 3426297 D 882 CDS YP_012465.1 46581657 2793858 3427697..3428095 1 NC_002937.3 identified by match to protein family HMM PF01402; CopG family transcriptional regulator 3428095 2793858 DVU3255 Desulfovibrio vulgaris str. Hildenborough CopG family transcriptional regulator YP_012465.1 3427697 D 882 CDS YP_012466.1 46581658 2793859 3428191..3429288 1 NC_002937.3 identified by match to protein family HMM PF01149; match to protein family HMM TIGR00577; formamidopyrimidine-DNA glycosylase 3429288 mutM 2793859 mutM Desulfovibrio vulgaris str. Hildenborough formamidopyrimidine-DNA glycosylase YP_012466.1 3428191 D 882 CDS YP_012467.1 46581659 2793860 complement(3429560..3432484) 1 NC_002937.3 identified by similarity to SP:P39695; match to protein family HMM TIGR00360; DNA internalization-related competence protein ComEC/Rec2 3432484 2793860 DVU3257 Desulfovibrio vulgaris str. Hildenborough DNA internalization-related competence protein ComEC/Rec2 YP_012467.1 3429560 R 882 CDS YP_012468.1 46581660 2793861 complement(3432618..3433871) 1 NC_002937.3 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3433871 murA 2793861 murA Desulfovibrio vulgaris str. Hildenborough UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_012468.1 3432618 R 882 CDS YP_012469.1 46581661 2793863 3434823..3435596 1 NC_002937.3 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 3435596 xth 2793863 xth Desulfovibrio vulgaris str. Hildenborough exodeoxyribonuclease III YP_012469.1 3434823 D 882 CDS YP_012470.1 46581662 2793864 complement(3435859..3436239) 1 NC_002937.3 hypothetical protein 3436239 2793864 DVU3260 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012470.1 3435859 R 882 CDS YP_012471.1 46581663 2793865 3436318..3436968 1 NC_002937.3 identified by similarity to SP:P17413; fumarate reductase, cytochrome subunit B 3436968 frdC 2793865 frdC Desulfovibrio vulgaris str. Hildenborough fumarate reductase, cytochrome subunit B YP_012471.1 3436318 D 882 CDS YP_012472.1 46581664 2793866 3436978..3438816 1 NC_002937.3 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3438816 fdrA 2793866 fdrA Desulfovibrio vulgaris str. Hildenborough fumarate reductase flavoprotein subunit YP_012472.1 3436978 D 882 CDS YP_012473.1 46581665 2793867 3438819..3439562 1 NC_002937.3 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3439562 frdB 2793867 frdB Desulfovibrio vulgaris str. Hildenborough fumarate reductase iron-sulfur subunit YP_012473.1 3438819 D 882 CDS YP_012474.1 46581666 2793868 3439948..3440787 1 NC_002937.3 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 3440787 2793868 DVU3264 Desulfovibrio vulgaris str. Hildenborough fumarate hydratase YP_012474.1 3439948 D 882 CDS YP_012475.1 46581667 2793869 3440787..3441338 1 NC_002937.3 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; tartrate dehydratase subunit beta 3441338 2793869 DVU3265 Desulfovibrio vulgaris str. Hildenborough tartrate dehydratase subunit beta YP_012475.1 3440787 D 882 CDS YP_012476.1 46581668 2793870 complement(3441602..3442393) 1 NC_002937.3 hypothetical protein 3442393 2793870 DVU3266 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012476.1 3441602 R 882 CDS YP_012477.1 46581669 2793871 3442444..3443055 1 NC_002937.3 hypothetical protein 3443055 2793871 DVU3267 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012477.1 3442444 D 882 CDS YP_012478.1 46581670 2793872 3443136..3444398 1 NC_002937.3 identified by similarity to OMNI:NTL01MK0862; hypothetical protein 3444398 2793872 DVU3268 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012478.1 3443136 D 882 CDS YP_012479.1 46581671 2793873 3444526..3447045 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 3447045 2793873 DVU3269 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase/response regulator YP_012479.1 3444526 D 882 CDS YP_012480.1 46581672 2795994 complement(3447306..3448331) 1 NC_002937.3 identified by similarity to SP:P94365; match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 3448331 cydB 2795994 cydB Desulfovibrio vulgaris str. Hildenborough cytochrome d ubiquinol oxidase subunit II YP_012480.1 3447306 R 882 CDS YP_012481.1 46581673 2795995 complement(3448377..3449678) 1 NC_002937.3 identified by similarity to SP:P94364; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 3449678 cydA 2795995 cydA Desulfovibrio vulgaris str. Hildenborough cytochrome d ubiquinol oxidase subunit I YP_012481.1 3448377 R 882 CDS YP_012482.1 46581674 2795996 complement(3450229..3450852) 1 NC_002937.3 identified by match to protein family HMM PF00515; hypothetical protein 3450852 2795996 DVU3272 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012482.1 3450229 R 882 CDS YP_012483.1 46581675 2795997 complement(3450836..3451228) 1 NC_002937.3 identified by similarity to GP:944973; hypothetical protein 3451228 2795997 DVU3273 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012483.1 3450836 R 882 CDS YP_012484.1 46581676 2795998 complement(3451228..3451896) 1 NC_002937.3 hypothetical protein 3451896 2795998 DVU3274 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012484.1 3451228 R 882 CDS YP_012485.1 46581677 2795999 complement(3451893..3452033) 1 NC_002937.3 hypothetical protein 3452033 2795999 DVU3275 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012485.1 3451893 R 882 CDS YP_012486.1 46581678 2796000 complement(3452147..3452335) 1 NC_002937.3 identified by similarity to SP:P08813; match to protein family HMM PF00037; ferredoxin I 3452335 2796000 DVU3276 Desulfovibrio vulgaris str. Hildenborough ferredoxin I YP_012486.1 3452147 R 882 CDS YP_012487.1 46581679 2796001 complement(3452418..3452516) 1 NC_002937.3 hypothetical protein 3452516 2796001 DVU3277 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012487.1 3452418 R 882 CDS YP_012488.1 46581680 2796002 complement(3452517..3454073) 1 NC_002937.3 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; peptidase/PDZ domain-containing protein 3454073 2796002 DVU3278 Desulfovibrio vulgaris str. Hildenborough peptidase/PDZ domain-containing protein YP_012488.1 3452517 R 882 CDS YP_012489.1 46581681 2796003 3454215..3455288 1 NC_002937.3 identified by similarity to SP:P36562; match to protein family HMM PF02277; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3455288 cobT 2796003 cobT Desulfovibrio vulgaris str. Hildenborough nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_012489.1 3454215 D 882 CDS YP_012490.1 46581682 2796005 3456490..3456990 1 NC_002937.3 hypothetical protein 3456990 2796005 DVU3281 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012490.1 3456490 D 882 CDS YP_012491.1 46581683 2796006 complement(3457225..3458124) 1 NC_002937.3 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase 3458124 2796006 DVU3282 Desulfovibrio vulgaris str. Hildenborough ADP-ribosylglycohydrolase YP_012491.1 3457225 R 882 CDS YP_012492.1 46581684 2796007 3459141..3459374 1 NC_002937.3 hypothetical protein 3459374 2796007 DVU3283 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012492.1 3459141 D 882 CDS YP_012493.1 46581685 2796008 complement(3459535..3461166) 1 NC_002937.3 identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3461166 2796008 DVU3284 Desulfovibrio vulgaris str. Hildenborough L-lactate permease YP_012493.1 3459535 R 882 CDS YP_012494.1 46581686 2796009 complement(3461235..3461411) 1 NC_002937.3 hypothetical protein 3461411 2796009 DVU3285 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012494.1 3461235 R 882 CDS YP_012495.1 46581687 2796010 complement(3461450..3461575) 1 NC_002937.3 hypothetical protein 3461575 2796010 DVU3286 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012495.1 3461450 R 882 CDS YP_012496.1 46581688 2796011 complement(3461929..3463962) 1 NC_002937.3 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3463962 2796011 DVU3287 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase group 2 family protein YP_012496.1 3461929 R 882 CDS YP_012497.1 46581689 2796012 3464004..3464111 1 NC_002937.3 hypothetical protein 3464111 2796012 DVU3288 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012497.1 3464004 D 882 CDS YP_012498.1 46581690 2796013 complement(3464096..3464260) 1 NC_002937.3 hypothetical protein 3464260 2796013 DVU3289 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012498.1 3464096 R 882 CDS YP_012499.1 46581691 2796014 3464277..3465332 1 NC_002937.3 identified by similarity to OMNI:NTL01TT0760; hypothetical protein 3465332 2796014 DVU3290 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012499.1 3464277 D 882 CDS YP_012500.1 46581692 2796015 3465296..3466930 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF01645; glutamate synthase 3466930 2796015 DVU3291 Desulfovibrio vulgaris str. Hildenborough glutamate synthase YP_012500.1 3465296 D 882 CDS YP_012501.1 46581693 2796016 3467009..3469339 1 NC_002937.3 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 3469339 2796016 DVU3292 Desulfovibrio vulgaris str. Hildenborough pyridine nucleotide-disulfide oxidoreductase YP_012501.1 3467009 D 882 CDS YP_012502.1 46581694 2796017 3469747..3471390 1 NC_002937.3 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 3471390 2796017 DVU3293 Desulfovibrio vulgaris str. Hildenborough acetolactate synthase YP_012502.1 3469747 D 882 CDS YP_012503.1 46581695 2796018 3471408..3472802 1 NC_002937.3 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 3472802 2796018 DVU3294 Desulfovibrio vulgaris str. Hildenborough aldehyde dehydrogenase YP_012503.1 3471408 D 882 CDS YP_012504.1 46581696 2796019 complement(3473090..3473737) 1 NC_002937.3 identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III 3473737 2796019 DVU3295 Desulfovibrio vulgaris str. Hildenborough hemolysin III YP_012504.1 3473090 R 882 CDS YP_012505.1 46581697 2796020 3473928..3474455 1 NC_002937.3 identified by similarity to GP:6689140; hypothetical protein 3474455 2796020 DVU3296 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012505.1 3473928 D 882 CDS YP_012506.1 46581698 2796032 complement(3474483..3475742) 1 NC_002937.3 identified by similarity to SP:P22306; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tryptophan-specific transport protein 3475742 2796032 DVU3297 Desulfovibrio vulgaris str. Hildenborough tryptophan-specific transport protein YP_012506.1 3474483 R 882 CDS YP_012507.1 46581699 2796033 complement(3475987..3476769) 1 NC_002937.3 hypothetical protein 3476769 2796033 DVU3298 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012507.1 3475987 R 882 CDS YP_012508.1 46581700 2796034 complement(3476756..3477826) 1 NC_002937.3 identified by match to protein family HMM PF01925; hypothetical protein 3477826 2796034 DVU3299 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012508.1 3476756 R 882 CDS YP_012509.1 46581701 2796035 complement(3477840..3478133) 1 NC_002937.3 hypothetical protein 3478133 2796035 DVU3300 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012509.1 3477840 R 882 CDS YP_012510.1 46581702 2796036 complement(3478195..3478737) 1 NC_002937.3 hypothetical protein 3478737 2796036 DVU3301 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012510.1 3478195 R 882 CDS YP_012511.1 46581703 2796037 complement(3478758..3479084) 1 NC_002937.3 hypothetical protein 3479084 2796037 DVU3302 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012511.1 3478758 R 882 CDS YP_012512.1 46581704 2796038 3479157..3481265 1 NC_002937.3 identified by match to protein family HMM PF00004; match to protein family HMM PF00072; match to protein family HMM PF05362; ATP-dependent protease La 3481265 2796038 DVU3303 Desulfovibrio vulgaris str. Hildenborough ATP-dependent protease La YP_012512.1 3479157 D 882 CDS YP_012513.1 46581705 2796040 3482737..3484092 1 NC_002937.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 3484092 2796040 DVU3305 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_012513.1 3482737 D 882 CDS YP_012514.1 46581706 2796041 3484322..3484486 1 NC_002937.3 hypothetical protein 3484486 2796041 DVU3306 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012514.1 3484322 D 882 CDS YP_012515.1 46581707 2796043 3484853..3485416 1 NC_002937.3 identified by similarity to SP:P09550; match to protein family HMM PF02441; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3485416 ubiX 2796043 ubiX Desulfovibrio vulgaris str. Hildenborough 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_012515.1 3484853 D 882 CDS YP_012516.1 46581708 2796044 3485523..3486242 1 NC_002937.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase 3486242 2796044 DVU3308 Desulfovibrio vulgaris str. Hildenborough metallo-beta-lactamase YP_012516.1 3485523 D 882 CDS YP_012517.1 46581709 2796045 3486274..3486606 1 NC_002937.3 identified by match to protein family HMM PF01541; endo/excinuclease amino terminal domain-containing protein 3486606 2796045 DVU3309 Desulfovibrio vulgaris str. Hildenborough endo/excinuclease amino terminal domain-containing protein YP_012517.1 3486274 D 882 CDS YP_012518.1 46581710 2796046 3486594..3488192 1 NC_002937.3 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase 3488192 2796046 DVU3310 Desulfovibrio vulgaris str. Hildenborough DEAD/DEAH box helicase YP_012518.1 3486594 D 882 CDS YP_012519.1 46581711 2796047 complement(3488379..3488555) 1 NC_002937.3 hypothetical protein 3488555 2796047 DVU3311 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012519.1 3488379 R 882 CDS YP_012520.1 46581712 2796048 3488692..3489147 1 NC_002937.3 identified by similarity to SP:O28974; hypothetical protein 3489147 2796048 DVU3312 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012520.1 3488692 D 882 CDS YP_012521.1 46581713 2796049 complement(3489178..3490068) 1 NC_002937.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3490068 2796049 DVU3313 Desulfovibrio vulgaris str. Hildenborough LysR family transcriptional regulator YP_012521.1 3489178 R 882 CDS YP_012522.1 46581714 2796050 complement(3490740..3492716) 1 NC_002937.3 identified by match to protein family HMM PF01136; U32 family peptidase 3492716 2796050 DVU3314 Desulfovibrio vulgaris str. Hildenborough U32 family peptidase YP_012522.1 3490740 R 882 CDS YP_012523.1 46581715 2796051 3493097..3493915 1 NC_002937.3 identified by similarity to SP:P25983; dihydroorotate dehydrogenase, electron transfer subunit 3493915 pyrK 2796051 pyrK Desulfovibrio vulgaris str. Hildenborough dihydroorotate dehydrogenase, electron transfer subunit YP_012523.1 3493097 D 882 CDS YP_012524.1 46581716 2796052 3493924..3494847 1 NC_002937.3 identified by similarity to SP:P54322; match to protein family HMM PF01180; match to protein family HMM TIGR01037; dihydroorotate dehydrogenase 3494847 pyrD 2796052 pyrD Desulfovibrio vulgaris str. Hildenborough dihydroorotate dehydrogenase YP_012524.1 3493924 D 882 CDS YP_012525.1 46581717 2796053 complement(3494848..3495018) 1 NC_002937.3 hypothetical protein 3495018 2796053 DVU3317 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012525.1 3494848 R 882 CDS YP_012526.1 46581718 2796054 complement(3495031..3495201) 1 NC_002937.3 hypothetical protein 3495201 2796054 DVU3318 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012526.1 3495031 R 882 CDS YP_012527.1 46581719 2796055 3495296..3498316 1 NC_002937.3 identified by similarity to SP:P09546; match to protein family HMM PF00171; match to protein family HMM PF01619; match to protein family HMM TIGR01237; proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase 3498316 putA 2796055 putA Desulfovibrio vulgaris str. Hildenborough proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase YP_012527.1 3495296 D 882 CDS YP_012528.1 46581720 2796056 complement(3498575..3498955) 1 NC_002937.3 identified by similarity to OMNI:NTL01YP2009; hypothetical protein 3498955 2796056 DVU3320 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012528.1 3498575 R 882 CDS YP_012529.1 46581721 2796057 complement(3498958..3499050) 1 NC_002937.3 hypothetical protein 3499050 2796057 DVU3321 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012529.1 3498958 R 882 CDS YP_012530.1 46581722 2796058 3499225..3499683 1 NC_002937.3 identified by similarity to OMNI:NTL01FN1931; hypothetical protein 3499683 2796058 DVU3322 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012530.1 3499225 D 882 CDS YP_012531.1 46581723 2796334 3499680..3501146 1 NC_002937.3 identified by match to protein family HMM PF02687; ABC transporter permease 3501146 2796334 DVU3323 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_012531.1 3499680 D 882 CDS YP_012532.1 46581724 2796335 3501366..3502031 1 NC_002937.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3502031 2796335 DVU3324 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_012532.1 3501366 D 882 CDS YP_012534.1 46581726 2796337 complement(3502423..3502743) 1 NC_002937.3 identified by similarity to GP:12024949; match to protein family HMM PF00893; SMR family multidrug efflux pump 3502743 2796337 DVU3326 Desulfovibrio vulgaris str. Hildenborough SMR family multidrug efflux pump YP_012534.1 3502423 R 882 CDS YP_012535.1 46581727 2796338 complement(3502752..3503135) 1 NC_002937.3 identified by similarity to GP:12024949; match to protein family HMM PF00893; SMR family multidrug efflux pump 3503135 2796338 DVU3327 Desulfovibrio vulgaris str. Hildenborough SMR family multidrug efflux pump YP_012535.1 3502752 R 882 CDS YP_012536.1 46581728 2796339 complement(3503457..3503786) 1 NC_002937.3 hypothetical protein 3503786 2796339 DVU3328 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012536.1 3503457 R 882 CDS YP_012537.1 46581729 2796340 complement(3503794..3503919) 1 NC_002937.3 hypothetical protein 3503919 2796340 DVU3329 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012537.1 3503794 R 882 CDS YP_012538.1 46581730 2796341 3503964..3504239 1 NC_002937.3 identified by similarity to OMNI:NTL01TE1332; hypothetical protein 3504239 2796341 DVU3330 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012538.1 3503964 D 882 CDS YP_012539.1 46581731 2796342 3504315..3504698 1 NC_002937.3 hypothetical protein 3504698 2796342 DVU3331 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012539.1 3504315 D 882 CDS YP_012540.1 46581732 2796343 3504689..3506509 1 NC_002937.3 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal translocating P-type ATPase 3506509 2796343 DVU3332 Desulfovibrio vulgaris str. Hildenborough heavy metal translocating P-type ATPase YP_012540.1 3504689 D 882 CDS YP_012541.1 46581733 2796344 3506506..3506964 1 NC_002937.3 hypothetical protein 3506964 2796344 DVU3333 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012541.1 3506506 D 882 CDS YP_012542.1 46581734 2796345 complement(3507257..3508606) 1 NC_002937.3 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 3508606 2796345 DVU3334 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent DNA-binding response regulator YP_012542.1 3507257 R 882 CDS YP_012543.1 46581735 2796346 complement(3508603..3510384) 1 NC_002937.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 3510384 2796346 DVU3335 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_012543.1 3508603 R 882 CDS YP_012544.1 46581736 2796347 complement(3510381..3511520) 1 NC_002937.3 identified by match to protein family HMM PF00582; potassium channel histidine kinase domain-containing protein/universal stress protein 3511520 2796347 DVU3336 Desulfovibrio vulgaris str. Hildenborough potassium channel histidine kinase domain-containing protein/universal stress protein YP_012544.1 3510381 R 882 CDS YP_012545.1 46581737 2796348 complement(3511602..3512159) 1 NC_002937.3 identified by similarity to SP:P03961; match to protein family HMM PF02669; match to protein family HMM TIGR00681; K+-transporting ATPase subunit C 3512159 kdpC 2796348 kdpC Desulfovibrio vulgaris str. Hildenborough K+-transporting ATPase subunit C YP_012545.1 3511602 R 882 CDS YP_012546.1 46581738 2796349 complement(3512169..3514205) 1 NC_002937.3 identified by similarity to GP:2772548; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497; K+-transporting ATPase subunit B 3514205 kdpB 2796349 kdpB Desulfovibrio vulgaris str. Hildenborough K+-transporting ATPase subunit B YP_012546.1 3512169 R 882 CDS YP_012547.1 46581739 2796350 complement(3514222..3515931) 1 NC_002937.3 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 3515931 kdpA 2796350 kdpA Desulfovibrio vulgaris str. Hildenborough potassium-transporting ATPase subunit A YP_012547.1 3514222 R 882 CDS YP_012548.1 46581740 2796351 complement(3515940..3516029) 1 NC_002937.3 identified by match to protein family HMM TIGR02115; K+-transporting ATPase subunit F 3516029 kdpF 2796351 kdpF Desulfovibrio vulgaris str. Hildenborough K+-transporting ATPase subunit F YP_012548.1 3515940 R 882 CDS YP_012549.1 46581741 2796352 3516041..3516304 1 NC_002937.3 hypothetical protein 3516304 2796352 DVU3340 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012549.1 3516041 D 882 CDS YP_012550.1 46581742 2796353 complement(3516446..3516559) 1 NC_002937.3 hypothetical protein 3516559 2796353 DVU3341 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012550.1 3516446 R 882 CDS YP_012551.1 46581743 2796354 3516572..3516988 1 NC_002937.3 hypothetical protein 3516988 2796354 DVU3342 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012551.1 3516572 D 882 CDS YP_012552.1 46581744 2796355 3516985..3517404 1 NC_002937.3 hypothetical protein 3517404 2796355 DVU3343 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012552.1 3516985 D 882 CDS YP_012553.1 46581745 2796356 3517416..3518585 1 NC_002937.3 hypothetical protein 3518585 2796356 DVU3344 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012553.1 3517416 D 882 CDS YP_003858627.1 304569748 9714838 complement(3518663..3518953) 1 NC_002937.3 hypothetical protein 3518953 9714838 DVU4007 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858627.1 3518663 R 882 CDS YP_012555.1 46581747 2796358 3519014..3519142 1 NC_002937.3 hypothetical protein 3519142 2796358 DVU3346 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012555.1 3519014 D 882 CDS YP_012556.1 46581748 2796359 complement(3519266..3519814) 1 NC_002937.3 identified by match to protein family HMM PF01558; pyruvate ferredoxin/flavodoxin oxidoreductase 3519814 2796359 DVU3347 Desulfovibrio vulgaris str. Hildenborough pyruvate ferredoxin/flavodoxin oxidoreductase YP_012556.1 3519266 R 882 CDS YP_012557.2 304569740 2796360 complement(3519814..3520596) 1 NC_002937.3 pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta 3520596 2796360 DVU3348 Desulfovibrio vulgaris str. Hildenborough pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta YP_012557.2 3519814 R 882 CDS YP_012558.1 46581750 2796361 complement(3520596..3521669) 1 NC_002937.3 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 3521669 2796361 DVU3349 Desulfovibrio vulgaris str. Hildenborough 2-ketoisovalerate ferredoxin reductase YP_012558.1 3520596 R 882 CDS YP_012559.1 46581751 2795664 complement(3521673..3521906) 1 NC_002937.3 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 3521906 2795664 DVU3350 Desulfovibrio vulgaris str. Hildenborough iron-sulfur cluster-binding protein YP_012559.1 3521673 R 882 CDS YP_012560.1 46581752 2795665 complement(3522270..3523385) 1 NC_002937.3 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 3523385 queA 2795665 queA Desulfovibrio vulgaris str. Hildenborough S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_012560.1 3522270 R 882 CDS YP_012561.1 46581753 2795666 3523498..3524067 1 NC_002937.3 lipoprotein 3524067 2795666 DVU3352 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012561.1 3523498 D 882 CDS YP_012562.1 46581754 2795667 3524067..3525281 1 NC_002937.3 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3525281 coaBC 2795667 coaBC Desulfovibrio vulgaris str. Hildenborough phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_012562.1 3524067 D 882 CDS YP_003858628.1 304569762 9714837 3525263..3526180 1 NC_002937.3 hypothetical protein 3526180 9714837 DVU4021 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858628.1 3525263 D 882 CDS YP_012564.1 46581756 2795669 3526649..3527404 1 NC_002937.3 identified by similarity to OMNI:CT0796; match to protein family HMM PF01145; hypothetical protein 3527404 2795669 DVU3355 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012564.1 3526649 D 882 CDS YP_012565.1 46581757 2795670 3527452..3528459 1 NC_002937.3 identified by similarity to GP:5739472; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 3528459 2795670 DVU3356 Desulfovibrio vulgaris str. Hildenborough NAD-dependent epimerase/dehydratase YP_012565.1 3527452 D 882 CDS YP_012566.1 46581758 2795671 complement(3528914..3529111) 1 NC_002937.3 hypothetical protein 3529111 2795671 DVU3357 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012566.1 3528914 R 882 CDS YP_012567.1 46581759 2795672 3529155..3529985 1 NC_002937.3 identified by match to protein family HMM PF00991; ParA family protein 3529985 2795672 DVU3358 Desulfovibrio vulgaris str. Hildenborough ParA family protein YP_012567.1 3529155 D 882 CDS YP_012568.1 46581760 2795673 complement(3529990..3530409) 1 NC_002937.3 hypothetical protein 3530409 2795673 DVU3359 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012568.1 3529990 R 882 CDS YP_012569.1 46581761 2795674 3530486..3531400 1 NC_002937.3 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family protein 3531400 2795674 DVU3360 Desulfovibrio vulgaris str. Hildenborough ParB family protein YP_012569.1 3530486 D 882 CDS YP_012570.1 46581762 2795675 3531411..3532436 1 NC_002937.3 identified by similarity to GP:882153; match to protein family HMM PF00294; ADP-heptose synthase 3532436 2795675 DVU3361 Desulfovibrio vulgaris str. Hildenborough ADP-heptose synthase YP_012570.1 3531411 D 882 CDS YP_012571.1 46581763 2795676 3532518..3532898 1 NC_002937.3 identified by similarity to OMNI:NTL01BH0861; hypothetical protein 3532898 2795676 DVU3362 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012571.1 3532518 D 882 CDS YP_012572.1 46581764 2795677 complement(3532995..3534518) 1 NC_002937.3 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; sun protein 3534518 sun 2795677 sun Desulfovibrio vulgaris str. Hildenborough sun protein YP_012572.1 3532995 R 882 CDS YP_012573.1 46581765 2795678 complement(3534750..3535673) 1 NC_002937.3 identified by similarity to OMNI:NTL01TT1406; hypothetical protein 3535673 2795678 DVU3364 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012573.1 3534750 R 882 CDS YP_012574.1 46581766 2795679 complement(3535794..3536786) 1 NC_002937.3 identified by similarity to SP:O85732; similarity to SP:P23882; similarity to SP:P94463; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 3536786 fmt 2795679 fmt Desulfovibrio vulgaris str. Hildenborough methionyl-tRNA formyltransferase YP_012574.1 3535794 R 882 CDS YP_012575.1 46581767 2795680 complement(3536759..3537274) 1 NC_002937.3 identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079; polypeptide deformylase 3537274 def 2795680 def Desulfovibrio vulgaris str. Hildenborough polypeptide deformylase YP_012575.1 3536759 R 882 CDS YP_012576.1 46581768 2795681 complement(3537577..3539409) 1 NC_002937.3 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 3539409 aspS 2795681 aspS Desulfovibrio vulgaris str. Hildenborough aspartyl-tRNA synthetase YP_012576.1 3537577 R 882 CDS YP_012577.1 46581769 2795682 complement(3539428..3540681) 1 NC_002937.3 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 3540681 hisS 2795682 hisS Desulfovibrio vulgaris str. Hildenborough histidyl-tRNA synthetase YP_012577.1 3539428 R 882 CDS YP_012578.1 46581770 2795683 complement(3540802..3541590) 1 NC_002937.3 identified by similarity to GP:19572327; hypothetical protein 3541590 2795683 DVU3369 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012578.1 3540802 R 882 CDS YP_012579.1 46581771 2795684 3541630..3542100 1 NC_002937.3 hypothetical protein 3542100 2795684 DVU3370 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012579.1 3541630 D 882 CDS YP_012580.1 46581772 2795685 complement(3542097..3544454) 1 NC_002937.3 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3544454 metE 2795685 metE Desulfovibrio vulgaris str. Hildenborough 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_012580.1 3542097 R 882 CDS YP_012581.1 46581773 2795686 complement(3544779..3544910) 1 NC_002937.3 hypothetical protein 3544910 2795686 DVU3372 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012581.1 3544779 R 882 CDS YP_012582.1 46581774 2795687 complement(3544991..3546655) 1 NC_002937.3 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 3546655 ilvD 2795687 ilvD Desulfovibrio vulgaris str. Hildenborough dihydroxy-acid dehydratase YP_012582.1 3544991 R 882 CDS YP_012583.1 46581775 2795688 complement(3546687..3547520) 1 NC_002937.3 identified by match to protein family HMM PF02687; permease 3547520 2795688 DVU3374 Desulfovibrio vulgaris str. Hildenborough permease YP_012583.1 3546687 R 882 CDS YP_012584.1 46581776 2795689 complement(3547562..3548278) 1 NC_002937.3 identified by similarity to SP:P10115; match to protein family HMM PF00005; cell division ATP-binding protein FtsE 3548278 2795689 DVU3375 Desulfovibrio vulgaris str. Hildenborough cell division ATP-binding protein FtsE YP_012584.1 3547562 R 882 CDS YP_012585.1 46581777 2795690 complement(3548478..3550052) 1 NC_002937.3 identified by match to protein family HMM PF00884; sulfatase 3550052 2795690 DVU3376 Desulfovibrio vulgaris str. Hildenborough sulfatase YP_012585.1 3548478 R 882 CDS YP_012586.1 46581778 2795691 complement(3550058..3550432) 1 NC_002937.3 identified by similarity to SP:P00556; match to protein family HMM PF01219; diacylglycerol kinase 3550432 dgkA 2795691 dgkA Desulfovibrio vulgaris str. Hildenborough diacylglycerol kinase YP_012586.1 3550058 R 882 CDS YP_012587.1 46581779 2795692 complement(3550535..3550996) 1 NC_002937.3 identified by match to protein family HMM PF04073; YbaK/EbsC protein 3550996 2795692 DVU3378 Desulfovibrio vulgaris str. Hildenborough YbaK/EbsC protein YP_012587.1 3550535 R 882 CDS YP_012588.1 46581780 2796398 complement(3551477..3553810) 1 NC_002937.3 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3553810 2796398 DVU3379 Desulfovibrio vulgaris str. Hildenborough ribonucleotide-diphosphate reductase subunit alpha YP_012588.1 3551477 R 882 CDS YP_012589.1 46581781 2796399 complement(3553923..3554045) 1 NC_002937.3 hypothetical protein 3554045 2796399 DVU3380 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012589.1 3553923 R 882 CDS YP_012590.1 46581782 2796400 complement(3554350..3555729) 1 NC_002937.3 identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; transcriptional regulator zraR 3555729 2796400 DVU3381 Desulfovibrio vulgaris str. Hildenborough transcriptional regulator zraR YP_012590.1 3554350 R 882 CDS YP_012591.1 46581783 2796401 complement(3555731..3557770) 1 NC_002937.3 identified by similarity to SP:P14377; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensor protein ZraS 3557770 zraS 2796401 zraS Desulfovibrio vulgaris str. Hildenborough sensor protein ZraS YP_012591.1 3555731 R 882 CDS YP_012592.1 46581784 2796402 3557761..3558243 1 NC_002937.3 hypothetical protein 3558243 2796402 DVU3383 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012592.1 3557761 D 882 CDS YP_012593.1 46581785 2796403 3558362..3558883 1 NC_002937.3 identified by similarity to SP:P32682; zinc resistance-associated protein 3558883 zraP 2796403 zraP Desulfovibrio vulgaris str. Hildenborough zinc resistance-associated protein YP_012593.1 3558362 D 882 CDS YP_012594.1 46581786 2796404 complement(3559220..3559354) 1 NC_002937.3 hypothetical protein 3559354 2796404 DVU3385 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012594.1 3559220 R 882 CDS YP_012595.1 46581787 2796405 complement(3559448..3560830) 1 NC_002937.3 identified by match to protein family HMM PF03773; permease 3560830 2796405 DVU3386 Desulfovibrio vulgaris str. Hildenborough permease YP_012595.1 3559448 R 882 CDS YP_012596.1 46581788 2796406 complement(3561502..3562515) 1 NC_002937.3 hypothetical protein 3562515 2796406 DVU3387 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012596.1 3561502 R 882 CDS YP_012597.1 46581789 2796407 complement(3562683..3563510) 1 NC_002937.3 identified by match to protein family HMM PF01435; lipoprotein 3563510 2796407 DVU3388 Desulfovibrio vulgaris str. Hildenborough lipoprotein YP_012597.1 3562683 R 882 CDS YP_012598.1 46581790 2796408 3563643..3565925 1 NC_002937.3 identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I 3565925 topA 2796408 topA Desulfovibrio vulgaris str. Hildenborough DNA topoisomerase I YP_012598.1 3563643 D 882 CDS YP_003858629.1 304569742 9714836 complement(3566161..3566721) 1 NC_002937.3 hypothetical protein 3566721 9714836 DVU4001 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858629.1 3566161 R 882 CDS YP_012600.1 46581792 2796410 3567052..3567300 1 NC_002937.3 hypothetical protein 3567300 2796410 DVU3391 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012600.1 3567052 D 882 CDS YP_012601.1 46581793 2796411 3567474..3568817 1 NC_002937.3 identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 3568817 glnA 2796411 glnA Desulfovibrio vulgaris str. Hildenborough glutamine synthetase, type I YP_012601.1 3567474 D 882 CDS YP_012602.1 46581794 2796412 complement(3568857..3569081) 1 NC_002937.3 hypothetical protein 3569081 2796412 DVU3393 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012602.1 3568857 R 882 CDS YP_012603.1 46581795 2796413 3569082..3569261 1 NC_002937.3 hypothetical protein 3569261 2796413 DVU3394 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_012603.1 3569082 D 882 CDS YP_012604.1 46581796 2796414 complement(3569404..3570714) 1 NC_002937.3 identified by match to protein family HMM PF01551; M24/M37 family peptidase 3570714 2796414 DVU3395 Desulfovibrio vulgaris str. Hildenborough M24/M37 family peptidase YP_012604.1 3569404 R 882 CDS YP_009041.1 46562244 2781567 complement(699..872) 1 NC_005863.1 hypothetical protein 872 2781567 DVUA0001 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009041.1 699 R 882 CDS YP_009042.1 46562243 2781501 871..1689 1 NC_005863.1 identified by match to protein family HMM PF00991; ParA family protein 1689 2781501 DVUA0002 Desulfovibrio vulgaris str. Hildenborough ParA family protein YP_009042.1 871 D 882 CDS YP_009043.1 46562242 2781500 1740..5135 1 NC_005863.1 hypothetical protein 5135 2781500 DVUA0003 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009043.1 1740 D 882 CDS YP_009044.1 46562241 2781499 5490..5843 1 NC_005863.1 identified by similarity to GP:14028719; match to protein family HMM PF00216; DNA-binding protein HU 5843 2781499 DVUA0004 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein HU YP_009044.1 5490 D 882 CDS YP_009045.1 46562272 2781483 complement(6498..7433) 1 NC_005863.1 identified by match to protein family HMM PF00582; universal stress protein 7433 2781483 DVUA0005 Desulfovibrio vulgaris str. Hildenborough universal stress protein YP_009045.1 6498 R 882 CDS YP_009046.1 46562240 2781498 complement(7456..8451) 1 NC_005863.1 identified by similarity to GP:619724; match to protein family HMM PF00571; match to protein family HMM PF01769; magnesium transporter MgtE 8451 2781498 DVUA0006 Desulfovibrio vulgaris str. Hildenborough magnesium transporter MgtE YP_009046.1 7456 R 882 CDS YP_009047.1 46562239 2781497 complement(8901..10445) 1 NC_005863.1 identified by similarity to SP:P10390; match to protein family HMM PF02579; match to protein family HMM PF04055; nitrogenase cofactor biosynthesis protein NifB 10445 nifB 2781497 nifB Desulfovibrio vulgaris str. Hildenborough nitrogenase cofactor biosynthesis protein NifB YP_009047.1 8901 R 882 CDS YP_009048.1 46562238 2781496 complement(10458..11972) 1 NC_005863.1 identified by similarity to GP:1666889; match to protein family HMM PF00148; nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 11972 2781496 DVUA0008 Desulfovibrio vulgaris str. Hildenborough nitrogenase molybdenum-iron cofactor biosynthesis protein NifN YP_009048.1 10458 R 882 CDS YP_009049.1 46562237 2781495 complement(11959..13665) 1 NC_005863.1 functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE 13665 2781495 DVUA0009 Desulfovibrio vulgaris str. Hildenborough nitrogenase molybdenum-cofactor biosynthesis protein NifE YP_009049.1 11959 R 882 CDS YP_009050.1 46562236 2781519 complement(14308..14610) 1 NC_005863.1 identified by similarity to SP:P07324; ferredoxin, 2fe-2s 14610 2781519 DVUA0010 Desulfovibrio vulgaris str. Hildenborough ferredoxin, 2fe-2s YP_009050.1 14308 R 882 CDS YP_009051.1 46562235 2781518 complement(14801..16186) 1 NC_005863.1 identified by similarity to SP:P11347; match to protein family HMM PF00148; match to protein family HMM TIGR01286; nitrogenase molybdenum-iron protein subunit beta 16186 nifK 2781518 nifK Desulfovibrio vulgaris str. Hildenborough nitrogenase molybdenum-iron protein subunit beta YP_009051.1 14801 R 882 CDS YP_009052.1 46562234 2781517 complement(16223..17851) 1 NC_005863.1 identified by similarity to SP:P00467; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862; nitrogenase molybdenum-iron protein subunit alpha 17851 nifD 2781517 nifD Desulfovibrio vulgaris str. Hildenborough nitrogenase molybdenum-iron protein subunit alpha YP_009052.1 16223 R 882 CDS YP_009053.1 46562233 2781516 complement(17863..18258) 1 NC_005863.1 identified by similarity to SP:P80016; match to protein family HMM PF00543; nitrogen regulatory protein P-II 18258 glnB-2 2781516 glnB-2 Desulfovibrio vulgaris str. Hildenborough nitrogen regulatory protein P-II YP_009053.1 17863 R 882 CDS YP_009054.1 46562232 2781515 complement(18268..18594) 1 NC_005863.1 identified by similarity to SP:P54807; match to protein family HMM PF00543; nitrogen regulatory protein P-II 18594 glnB-3 2781515 glnB-3 Desulfovibrio vulgaris str. Hildenborough nitrogen regulatory protein P-II YP_009054.1 18268 R 882 CDS YP_009055.1 46562231 2781514 complement(18877..19710) 1 NC_005863.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; nitrogenase reductase 19710 nifH 2781514 nifH Desulfovibrio vulgaris str. Hildenborough nitrogenase reductase YP_009055.1 18877 R 882 CDS YP_009056.1 46562270 2781481 20468..21622 1 NC_005863.1 identified by similarity to SP:Q44290; match to protein family HMM PF00682; homocitrate synthase 21622 2781481 DVUA0016 Desulfovibrio vulgaris str. Hildenborough homocitrate synthase YP_009056.1 20468 D 882 CDS YP_009057.1 46562230 2781546 22251..22361 1 NC_005863.1 hypothetical protein 22361 2781546 DVUA0017 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009057.1 22251 D 882 CDS YP_009058.1 46562229 2781545 complement(22463..22651) 1 NC_005863.1 hypothetical protein 22651 2781545 DVUA0018 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009058.1 22463 R 882 CDS YP_009059.1 46562228 2781544 22786..24444 1 NC_005863.1 type II DNA modification methyltransferase 24444 2781544 DVUA0019 Desulfovibrio vulgaris str. Hildenborough type II DNA modification methyltransferase YP_009059.1 22786 D 882 CDS YP_009060.1 46562227 2781543 24444..25184 1 NC_005863.1 type II restriction endonuclease 25184 2781543 DVUA0020 Desulfovibrio vulgaris str. Hildenborough type II restriction endonuclease YP_009060.1 24444 D 882 CDS YP_003858671.1 304570524 9714864 complement(25339..26583) 1 NC_005863.1 hypothetical protein 26583 9714864 DVUA204 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858671.1 25339 R 882 CDS YP_009061.1 46562226 2781542 complement(26632..27693) 1 NC_005863.1 identified by similarity to SP:P75830; match to protein family HMM PF00529; hypothetical protein 27693 2781542 DVUA0021 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009061.1 26632 R 882 CDS YP_009062.1 46562225 2781541 complement(27702..28388) 1 NC_005863.1 identified by similarity to OMNI:NTL01TE1840; match to protein family HMM PF00005; ABC transporter ATP-binding protein 28388 2781541 DVUA0022 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_009062.1 27702 R 882 CDS YP_009063.1 46562224 2781540 complement(28487..29617) 1 NC_005863.1 identified by similarity to GP:22002528; match to protein family HMM PF02687; ABC transporter permease 29617 2781540 DVUA0023 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_009063.1 28487 R 882 CDS YP_009064.1 46562223 2781560 complement(29689..30828) 1 NC_005863.1 identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 factor interaction domain-containing protein 30828 2781560 DVUA0024 Desulfovibrio vulgaris str. Hildenborough sigma-54 factor interaction domain-containing protein YP_009064.1 29689 R 882 CDS YP_009065.1 46562222 2781559 complement(30780..31241) 1 NC_005863.1 identified by similarity to OMNI:TC0753; match to protein family HMM PF00072; response regulator receiver domain-containing protein 31241 2781559 DVUA0025 Desulfovibrio vulgaris str. Hildenborough response regulator receiver domain-containing protein YP_009065.1 30780 R 882 CDS YP_009066.1 46562221 2781558 31267..31380 1 NC_005863.1 hypothetical protein 31380 2781558 DVUA0026 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009066.1 31267 D 882 CDS YP_009067.1 46562220 2781557 complement(31459..31569) 1 NC_005863.1 hypothetical protein 31569 2781557 DVUA0027 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009067.1 31459 R 882 CDS YP_009068.1 46562219 2781556 31587..31997 1 NC_005863.1 hypothetical protein 31997 2781556 DVUA0028 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009068.1 31587 D 882 CDS YP_009069.1 46562218 2781555 complement(32118..32798) 1 NC_005863.1 hypothetical protein 32798 2781555 DVUA0029 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009069.1 32118 R 882 CDS YP_009070.1 46562217 2781554 33321..34022 1 NC_005863.1 hypothetical protein 34022 2781554 DVUA0030 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009070.1 33321 D 882 CDS YP_009071.1 46562216 2781539 complement(34717..35583) 1 NC_005863.1 hypothetical protein 35583 2781539 DVUA0031 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009071.1 34717 R 882 CDS YP_009072.1 46562215 2781538 complement(35708..36568) 1 NC_005863.1 hypothetical protein 36568 2781538 DVUA0032 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009072.1 35708 R 882 CDS YP_009073.1 46562214 2781537 36600..36797 1 NC_005863.1 hypothetical protein 36797 2781537 DVUA0033 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009073.1 36600 D 882 CDS YP_009074.1 46562213 2781536 complement(37254..40223) 1 NC_005863.1 identified by match to protein family HMM PF00899; hypothetical protein 40223 2781536 DVUA0034 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009074.1 37254 R 882 CDS YP_009075.1 46562212 2781535 complement(40404..40751) 1 NC_005863.1 hypothetical protein 40751 2781535 DVUA0035 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009075.1 40404 R 882 CDS YP_009076.1 46562211 2781534 41239..43986 1 NC_005863.1 identified by match to protein family HMM PF00515; TPR domain-containing protein 43986 2781534 DVUA0036 Desulfovibrio vulgaris str. Hildenborough TPR domain-containing protein YP_009076.1 41239 D 882 CDS YP_009077.1 46562210 2781553 44190..45644 1 NC_005863.1 identified by match to protein family HMM PF02397; sugar transferase domain-containing protein 45644 2781553 DVUA0037 Desulfovibrio vulgaris str. Hildenborough sugar transferase domain-containing protein YP_009077.1 44190 D 882 CDS YP_009078.1 46562209 2781552 45644..46450 1 NC_005863.1 identified by match to protein family HMM PF02563; capsular polysaccharide transport protein 46450 2781552 DVUA0038 Desulfovibrio vulgaris str. Hildenborough capsular polysaccharide transport protein YP_009078.1 45644 D 882 CDS YP_009079.1 46562208 2781551 46451..47953 1 NC_005863.1 identified by match to protein family HMM PF02706; chain length determinant family protein 47953 2781551 DVUA0039 Desulfovibrio vulgaris str. Hildenborough chain length determinant family protein YP_009079.1 46451 D 882 CDS YP_009080.1 46562207 2781550 47964..49082 1 NC_005863.1 polysaccharide biosynthesis protein 49082 2781550 DVUA0040 Desulfovibrio vulgaris str. Hildenborough polysaccharide biosynthesis protein YP_009080.1 47964 D 882 CDS YP_009081.1 46562206 2781549 49094..50413 1 NC_005863.1 identified by similarity to SP:P45754; hypothetical protein 50413 2781549 DVUA0041 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009081.1 49094 D 882 CDS YP_009082.1 46562205 2781548 50590..51912 1 NC_005863.1 putative lipoprotein 51912 2781548 DVUA0042 Desulfovibrio vulgaris str. Hildenborough putative lipoprotein YP_009082.1 50590 D 882 CDS YP_009083.1 46562204 2781547 51965..52816 1 NC_005863.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 52816 2781547 DVUA0043 Desulfovibrio vulgaris str. Hildenborough polysaccharide deacetylase family protein YP_009083.1 51965 D 882 CDS YP_009084.1 46562275 2781486 52878..53855 1 NC_005863.1 identified by similarity to GB:CAD85710.1; hypothetical protein 53855 2781486 DVUA0044 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009084.1 52878 D 882 CDS YP_009085.1 46562203 2781494 53852..55468 1 NC_005863.1 identified by match to protein family HMM PF01041; aminotransferase 55468 2781494 DVUA0045 Desulfovibrio vulgaris str. Hildenborough aminotransferase YP_009085.1 53852 D 882 CDS YP_009086.1 46562202 2781493 55465..56913 1 NC_005863.1 identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 56913 2781493 DVUA0046 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase, group 2 family protein YP_009086.1 55465 D 882 CDS YP_009087.1 46562201 2781492 56989..58305 1 NC_005863.1 hypothetical protein 58305 2781492 DVUA0047 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009087.1 56989 D 882 CDS YP_009088.1 46562200 2781491 58360..59757 1 NC_005863.1 identified by similarity to SP:Q02729; match to protein family HMM PF04932; exopolysaccharide production protein 59757 2781491 DVUA0048 Desulfovibrio vulgaris str. Hildenborough exopolysaccharide production protein YP_009088.1 58360 D 882 CDS YP_009089.1 46562276 2781487 59761..61230 1 NC_005863.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis family protein 61230 2781487 DVUA0049 Desulfovibrio vulgaris str. Hildenborough polysaccharide biosynthesis family protein YP_009089.1 59761 D 882 CDS YP_009090.1 46562269 2781615 61246..62502 1 NC_005863.1 identified by similarity to GP:28806454; hypothetical protein 62502 2781615 DVUA0050 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009090.1 61246 D 882 CDS YP_009091.1 46562199 2781490 62499..63887 1 NC_005863.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 63887 2781490 DVUA0051 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase, group 1 family protein YP_009091.1 62499 D 882 CDS YP_009092.1 46562268 2781614 64069..64737 1 NC_005863.1 identified by similarity to OMNI:NTL01RSA1012; hypothetical protein 64737 2781614 DVUA0052 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009092.1 64069 D 882 CDS YP_009093.1 46562267 2781613 64988..65575 1 NC_005863.1 identified by similarity to SP:Q58464; match to protein family HMM PF00132; hypothetical protein 65575 2781613 DVUA0053 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009093.1 64988 D 882 CDS YP_009094.1 46562198 2781489 65572..66972 1 NC_005863.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 66972 2781489 DVUA0054 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase, group 1 family protein YP_009094.1 65572 D 882 CDS YP_009095.1 46562197 2781480 66969..67922 1 NC_005863.1 hypothetical protein 67922 2781480 DVUA0055 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009095.1 66969 D 882 CDS YP_009096.1 46562196 2781479 67912..68532 1 NC_005863.1 hypothetical protein 68532 2781479 DVUA0056 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009096.1 67912 D 882 CDS YP_009097.1 46562195 2781478 68687..70117 1 NC_005863.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator/response regulator 70117 2781478 DVUA0057 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator/response regulator YP_009097.1 68687 D 882 CDS YP_009098.1 46562194 2781513 70158..72893 1 NC_005863.1 identified by match to protein family HMM PF02012; BNR/Asp-box repeat-containing protein 72893 2781513 DVUA0058 Desulfovibrio vulgaris str. Hildenborough BNR/Asp-box repeat-containing protein YP_009098.1 70158 D 882 CDS YP_009099.1 46562193 2781512 72938..74314 1 NC_005863.1 identified by similarity to OMNI:NTL01ATA1012; hypothetical protein 74314 2781512 DVUA0059 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009099.1 72938 D 882 CDS YP_009100.1 46562192 2781511 74453..75838 1 NC_005863.1 identified by match to protein family HMM PF01757; hypothetical protein 75838 2781511 DVUA0060 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009100.1 74453 D 882 CDS YP_009101.1 46562191 2781510 75835..77187 1 NC_005863.1 identified by similarity to OMNI:NTL03PA04839; hypothetical protein 77187 2781510 DVUA0061 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009101.1 75835 D 882 CDS YP_009102.1 46562190 2781509 77184..78479 1 NC_005863.1 identified by similarity to OMNI:NTL01ATA1012; hypothetical protein 78479 2781509 DVUA0062 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009102.1 77184 D 882 CDS YP_009103.1 46562189 2781508 78536..80092 1 NC_005863.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Orn/DAP/Arg family decarboxylase 80092 2781508 DVUA0063 Desulfovibrio vulgaris str. Hildenborough Orn/DAP/Arg family decarboxylase YP_009103.1 78536 D 882 CDS YP_009104.1 46562188 2781507 80843..82885 1 NC_005863.1 identified by similarity to GP:2598023; hypothetical protein 82885 2781507 DVUA0064 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009104.1 80843 D 882 CDS YP_009105.1 46562187 2781601 82882..84918 1 NC_005863.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 84918 2781601 DVUA0065 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_009105.1 82882 D 882 CDS YP_009106.1 46562186 2781600 85372..86784 1 NC_005863.1 identified by match to protein family HMM PF01734; patatin family phospholipase 86784 2781600 DVUA0066 Desulfovibrio vulgaris str. Hildenborough patatin family phospholipase YP_009106.1 85372 D 882 CDS YP_009107.1 46562185 2781599 complement(87157..88281) 1 NC_005863.1 identified by match to protein family HMM PF01757; hypothetical protein 88281 2781599 DVUA0067 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009107.1 87157 R 882 CDS YP_009108.1 46562184 2781598 complement(88333..90315) 1 NC_005863.1 hypothetical protein 90315 2781598 DVUA0068 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009108.1 88333 R 882 CDS YP_009109.1 46562183 2781597 complement(90871..92028) 1 NC_005863.1 identified by match to protein family HMM PF00535; GtrA family protein, selenocysteine-containing 92028 2781597 DVUA0069 Desulfovibrio vulgaris str. Hildenborough GtrA family protein, selenocysteine-containing YP_009109.1 90871 R 882 CDS YP_009110.1 46562182 2781596 complement(92091..94022) 1 NC_005863.1 identified by similarity to OMNI:NTL01TE2386; hypothetical protein 94022 2781596 DVUA0070 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009110.1 92091 R 882 CDS YP_009111.1 46562181 2781607 complement(94115..96271) 1 NC_005863.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535; glycosyl transferase, group 1/2 family protein 96271 2781607 DVUA0071 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase, group 1/2 family protein YP_009111.1 94115 R 882 CDS YP_009112.1 46562180 2781606 complement(96400..97737) 1 NC_005863.1 identified by similarity to SP:P71237; match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 97737 2781606 DVUA0072 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase, group 1 family protein YP_009112.1 96400 R 882 CDS YP_009113.1 46562179 2781605 complement(97846..100515) 1 NC_005863.1 identified by similarity to SP:O05272; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase (glutamine-hydrolyzing) 100515 2781605 DVUA0073 Desulfovibrio vulgaris str. Hildenborough asparagine synthase (glutamine-hydrolyzing) YP_009113.1 97846 R 882 CDS YP_009114.1 46562178 2781604 complement(100606..101295) 1 NC_005863.1 identified by match to protein family HMM PF00685; sulfotransferase family protein 101295 2781604 DVUA0074 Desulfovibrio vulgaris str. Hildenborough sulfotransferase family protein YP_009114.1 100606 R 882 CDS YP_009115.1 46562177 2781603 complement(101383..102789) 1 NC_005863.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 102789 2781603 DVUA0075 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_009115.1 101383 R 882 CDS YP_009116.1 46562176 2781602 complement(102804..104198) 1 NC_005863.1 identified by similarity to GP:22759343; match to protein family HMM PF00005; ABC transporter ATP-binding protein 104198 2781602 DVUA0076 Desulfovibrio vulgaris str. Hildenborough ABC transporter ATP-binding protein YP_009116.1 102804 R 882 CDS YP_009117.1 46562266 2781612 complement(104230..105114) 1 NC_005863.1 identified by match to protein family HMM PF01061; ABC transporter permease 105114 2781612 DVUA0077 Desulfovibrio vulgaris str. Hildenborough ABC transporter permease YP_009117.1 104230 R 882 CDS YP_009118.1 46562265 2781611 complement(105230..105388) 1 NC_005863.1 hypothetical protein 105388 2781611 DVUA0078 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009118.1 105230 R 882 CDS YP_009119.1 46562175 2781533 105582..106268 1 NC_005863.1 identified by similarity to GP:11992144; match to protein family HMM PF01583; match to protein family HMM TIGR00455; adenylylsulfate kinase 106268 cysC 2781533 cysC Desulfovibrio vulgaris str. Hildenborough adenylylsulfate kinase YP_009119.1 105582 D 882 CDS YP_009120.1 46562264 2781610 106366..107247 1 NC_005863.1 identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 107247 2781610 DVUA0080 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase, group 2 family protein YP_009120.1 106366 D 882 CDS YP_009121.1 46562174 2781532 107247..109361 1 NC_005863.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535; glycosyl transferase, group 1/2 family protein 109361 2781532 DVUA0081 Desulfovibrio vulgaris str. Hildenborough glycosyl transferase, group 1/2 family protein YP_009121.1 107247 D 882 CDS YP_009122.1 46562173 2781531 complement(109666..110697) 1 NC_005863.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase 110697 2781531 DVUA0082 Desulfovibrio vulgaris str. Hildenborough phage integrase family site specific recombinase YP_009122.1 109666 R 882 CDS YP_009123.1 46562172 2781530 110806..110934 1 NC_005863.1 hypothetical protein 110934 2781530 DVUA0083 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009123.1 110806 D 882 CDS YP_009124.1 46562171 2781529 111110..111301 1 NC_005863.1 AbrB family transcriptional regulator 111301 2781529 DVUA0084 Desulfovibrio vulgaris str. Hildenborough AbrB family transcriptional regulator YP_009124.1 111110 D 882 CDS YP_009125.1 46562170 2781528 111356..114886 1 NC_005863.1 identified by similarity to OMNI:NTL01ST4343; hypothetical protein 114886 2781528 DVUA0085 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009125.1 111356 D 882 CDS YP_009126.1 46562169 2781566 complement(114998..116089) 1 NC_005863.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; response regulator 116089 2781566 DVUA0086 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009126.1 114998 R 882 CDS YP_009127.1 46562168 2781565 complement(116475..119588) 1 NC_005863.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR01369; sensory box histidine kinase 119588 2781565 DVUA0087 Desulfovibrio vulgaris str. Hildenborough sensory box histidine kinase YP_009127.1 116475 R 882 CDS YP_009128.1 46562263 2781609 complement(119777..120796) 1 NC_005863.1 identified by similarity to OMNI:VCA0212; hypothetical protein 120796 2781609 DVUA0088 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009128.1 119777 R 882 CDS YP_009129.1 46562167 2781564 complement(121289..121906) 1 NC_005863.1 hypothetical protein 121906 2781564 DVUA0089 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009129.1 121289 R 882 CDS YP_009130.1 46562166 2781563 122486..123358 1 NC_005863.1 identified by similarity to SP:Q46831; hypothetical protein 123358 2781563 DVUA0090 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009130.1 122486 D 882 CDS YP_009131.1 46562165 2781562 123495..124952 1 NC_005863.1 identified by similarity to SP:P45737; match to protein family HMM PF00199; catalase 124952 katA 2781562 katA Desulfovibrio vulgaris str. Hildenborough catalase YP_009131.1 123495 D 882 CDS YP_009132.1 46562164 2781561 complement(125171..125650) 1 NC_005863.1 hypothetical protein 125650 2781561 DVUA0092 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009132.1 125171 R 882 CDS YP_009133.1 46562163 2781624 complement(125839..127176) 1 NC_005863.1 identified by similarity to SP:P17551; match to protein family HMM PF02417; chromate transport family protein 127176 2781624 DVUA0093 Desulfovibrio vulgaris str. Hildenborough chromate transport family protein YP_009133.1 125839 R 882 CDS YP_009134.1 46562262 2781608 complement(127186..128190) 1 NC_005863.1 identified by similarity to SP:P17552; chrB protein 128190 chrB 2781608 chrB Desulfovibrio vulgaris str. Hildenborough chrB protein YP_009134.1 127186 R 882 CDS YP_009135.1 46562162 2781623 128594..129079 1 NC_005863.1 hypothetical protein 129079 2781623 DVUA0095 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009135.1 128594 D 882 CDS YP_009136.1 46562161 2781622 129163..130374 1 NC_005863.1 identified by similarity to OMNI:AF1325; match to protein family HMM PF00083; major facilitator superfamily protein 130374 2781622 DVUA0096 Desulfovibrio vulgaris str. Hildenborough major facilitator superfamily protein YP_009136.1 129163 D 882 CDS YP_009137.1 46562160 2781621 130707..132206 1 NC_005863.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 132206 2781621 DVUA0097 Desulfovibrio vulgaris str. Hildenborough radical SAM domain-containing protein YP_009137.1 130707 D 882 CDS YP_009138.1 46562159 2781506 complement(132351..133400) 1 NC_005863.1 identified by similarity to SP:Q8TW08; dehydrogenase 133400 2781506 DVUA0098 Desulfovibrio vulgaris str. Hildenborough dehydrogenase YP_009138.1 132351 R 882 CDS YP_009139.1 46562158 2781505 complement(133570..135753) 1 NC_005863.1 identified by match to protein family HMM PF00672; HAMP domain-containing protein 135753 2781505 DVUA0099 Desulfovibrio vulgaris str. Hildenborough HAMP domain-containing protein YP_009139.1 133570 R 882 CDS YP_009140.1 46562157 2781504 complement(136112..137839) 1 NC_005863.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent transcriptional regulator 137839 2781504 DVUA0100 Desulfovibrio vulgaris str. Hildenborough sigma-54 dependent transcriptional regulator YP_009140.1 136112 R 882 CDS YP_009141.1 46562156 2781503 complement(137887..138927) 1 NC_005863.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404; hrpY/hrcU family type III secretion protein 138927 2781503 DVUA0101 Desulfovibrio vulgaris str. Hildenborough hrpY/hrcU family type III secretion protein YP_009141.1 137887 R 882 CDS YP_009142.1 46562155 2781502 complement(138924..139739) 1 NC_005863.1 identified by similarity to GP:1181175; match to protein family HMM PF01311; type III secretion inner membrane protein 139739 escT 2781502 escT Desulfovibrio vulgaris str. Hildenborough type III secretion inner membrane protein YP_009142.1 138924 R 882 CDS YP_009143.1 46562154 2781594 complement(139746..140006) 1 NC_005863.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403; HrpO family type III secretion protein 140006 invX 2781594 invX Desulfovibrio vulgaris str. Hildenborough HrpO family type III secretion protein YP_009143.1 139746 R 882 CDS YP_009144.1 46562153 2781593 complement(140328..142421) 1 NC_005863.1 identified by similarity to SP:P31487; similarity to SP:P35533; match to protein family HMM PF00771; match to protein family HMM TIGR01399; type III secretion inner membrane protein HrcV family 142421 2781593 DVUA0104 Desulfovibrio vulgaris str. Hildenborough type III secretion inner membrane protein HrcV family YP_009144.1 140328 R 882 CDS YP_009145.1 46562277 2781488 complement(143145..143519) 1 NC_005863.1 identified by similarity to GB:BAC59928.1; hypothetical protein 143519 2781488 DVUA0105 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009145.1 143145 R 882 CDS YP_009146.1 46562152 2781592 complement(143522..144646) 1 NC_005863.1 identified by match to protein family HMM PF02523; YopN family type III secretion target protein 144646 2781592 DVUA0106 Desulfovibrio vulgaris str. Hildenborough YopN family type III secretion target protein YP_009146.1 143522 R 882 CDS YP_009147.1 46562151 2781591 144885..144989 1 NC_005863.1 hypothetical protein 144989 2781591 DVUA0107 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009147.1 144885 D 882 CDS YP_003858672.1 304570523 9714865 145353..145655 1 NC_005863.1 hypothetical protein 145655 9714865 DVUA203 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858672.1 145353 D 882 CDS YP_009148.2 304570519 2781590 145580..146200 1 NC_005863.1 hypothetical protein 146200 2781590 DVUA0108 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009148.2 145580 D 882 CDS YP_009149.1 46562149 2781620 146209..146709 1 NC_005863.1 identified by similarity to GB:AAO91772.1; LcrH/SycD family type III secretion system chaperone 146709 2781620 DVUA0109 Desulfovibrio vulgaris str. Hildenborough LcrH/SycD family type III secretion system chaperone YP_009149.1 146209 D 882 CDS YP_009150.1 46562278 2781586 146706..147713 1 NC_005863.1 type III secretion system target, YopB family 147713 2781586 DVUA0110 Desulfovibrio vulgaris str. Hildenborough type III secretion system target, YopB family YP_009150.1 146706 D 882 CDS YP_009151.1 46562148 2781619 147662..148558 1 NC_005863.1 identified by similarity to GB:AAL72351.1; type III secretion system protein IpaC family 148558 2781619 DVUA0111 Desulfovibrio vulgaris str. Hildenborough type III secretion system protein IpaC family YP_009151.1 147662 D 882 CDS YP_003858673.1 304570521 9714866 148611..149066 1 NC_005863.1 hypothetical protein 149066 9714866 DVUA201 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858673.1 148611 D 882 CDS YP_009152.1 46562147 2781618 149369..151243 1 NC_005863.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; type III secretion system protein YscC family 151243 2781618 DVUA0112 Desulfovibrio vulgaris str. Hildenborough type III secretion system protein YscC family YP_009152.1 149369 D 882 CDS YP_009153.1 46562146 2781617 151240..153048 1 NC_005863.1 identified by similarity to SP:Q01245; YscD family type III secretion protein 153048 2781617 DVUA0113 Desulfovibrio vulgaris str. Hildenborough YscD family type III secretion protein YP_009153.1 151240 D 882 CDS YP_009154.1 46562145 2781616 153041..153250 1 NC_005863.1 hypothetical protein 153250 2781616 DVUA0114 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009154.1 153041 D 882 CDS YP_009155.1 46562144 2781477 153276..153527 1 NC_005863.1 identified by similarity to PIR:D86044; match to protein family HMM TIGR02105; type III secretion system protein YscF family 153527 2781477 DVUA0115 Desulfovibrio vulgaris str. Hildenborough type III secretion system protein YscF family YP_009155.1 153276 D 882 CDS YP_009156.1 46562143 2781476 153722..154087 1 NC_005863.1 identified by similarity to GP:10189650; hypothetical protein 154087 2781476 DVUA0116 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009156.1 153722 D 882 CDS YP_009157.1 46562142 2781475 154970..155785 1 NC_005863.1 identified by similarity to SP:Q01251; match to protein family HMM PF01514; type III secretion lipoprotein 155785 escJ 2781475 escJ Desulfovibrio vulgaris str. Hildenborough type III secretion lipoprotein YP_009157.1 154970 D 882 CDS YP_003858674.1 304570520 9714867 155792..156715 1 NC_005863.1 hypothetical protein 156715 9714867 DVUA200 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858674.1 155792 D 882 CDS YP_009158.1 46562261 2781522 156694..157311 1 NC_005863.1 identified by similarity to GB:AAC38611.1; type III secretion system protein 157311 2781522 DVUA0118 Desulfovibrio vulgaris str. Hildenborough type III secretion system protein YP_009158.1 156694 D 882 CDS YP_009159.1 46562141 2781474 157639..158955 1 NC_005863.1 identified by similarity to SP:P40290; match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; type III secretion system ATPase 158955 2781474 DVUA0119 Desulfovibrio vulgaris str. Hildenborough type III secretion system ATPase YP_009159.1 157639 D 882 CDS YP_009160.1 46562274 2781485 159466..160158 1 NC_005863.1 identified by similarity to GB:BAC59933.1; type III secretion protein 160158 2781485 DVUA0120 Desulfovibrio vulgaris str. Hildenborough type III secretion protein YP_009160.1 159466 D 882 CDS YP_009161.1 46562140 2781473 160160..161614 1 NC_005863.1 identified by match to protein family HMM PF01052; type III secretion system protein YopQ family 161614 2781473 DVUA0121 Desulfovibrio vulgaris str. Hildenborough type III secretion system protein YopQ family YP_009161.1 160160 D 882 CDS YP_009162.1 46562139 2781527 161611..162261 1 NC_005863.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 162261 2781527 DVUA0122 Desulfovibrio vulgaris str. Hildenborough type III secretion system protein YP_009162.1 161611 D 882 CDS YP_009163.1 46562138 2781526 162292..162627 1 NC_005863.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor 162627 2781526 DVUA0123 Desulfovibrio vulgaris str. Hildenborough anti-anti-sigma factor YP_009163.1 162292 D 882 CDS YP_009164.1 46562137 2781525 162643..163059 1 NC_005863.1 identified by similarity to OMNI:NTL01SS01077; sigma factor serine-protein kinase 163059 2781525 DVUA0124 Desulfovibrio vulgaris str. Hildenborough sigma factor serine-protein kinase YP_009164.1 162643 D 882 CDS YP_009165.1 46562136 2781524 163070..164422 1 NC_005863.1 identified by match to protein family HMM PF01464; Slt family transglycosylase 164422 2781524 DVUA0125 Desulfovibrio vulgaris str. Hildenborough Slt family transglycosylase YP_009165.1 163070 D 882 CDS YP_009166.1 46562135 2781523 164796..165263 1 NC_005863.1 identified by similarity to OMNI:CP0368; hypothetical protein 165263 2781523 DVUA0126 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009166.1 164796 D 882 CDS YP_003858675.1 304570522 9714868 165467..167803 1 NC_005863.1 hypothetical protein 167803 9714868 DVUA202 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_003858675.1 165467 D 882 CDS YP_009168.1 46562133 2781584 complement(168022..168168) 1 NC_005863.1 hypothetical protein 168168 2781584 DVUA0128 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009168.1 168022 R 882 CDS YP_009169.1 46562132 2781583 168254..170362 1 NC_005863.1 identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 domain-containing protein 170362 cas3 2781583 cas3 Desulfovibrio vulgaris str. Hildenborough CRISPR-associated helicase Cas3 domain-containing protein YP_009169.1 168254 D 882 CDS YP_009170.1 46562260 2781521 170376..171059 1 NC_005863.1 identified by match to protein family HMM TIGR01876; CRISPR-associated Csd1 family protein 171059 2781521 DVUA0130 Desulfovibrio vulgaris str. Hildenborough CRISPR-associated Csd1 family protein YP_009170.1 170376 D 882 CDS YP_009171.1 46562131 2781582 171056..172894 1 NC_005863.1 identified by match to protein family HMM TIGR01863; CRISPR-associated Csd1 family protein 172894 2781582 DVUA0131 Desulfovibrio vulgaris str. Hildenborough CRISPR-associated Csd1 family protein YP_009171.1 171056 D 882 CDS YP_009172.1 46562130 2781595 172897..173769 1 NC_005863.1 identified by match to protein family HMM PF05107; match to protein family HMM TIGR01595; CRISPR-associated Csh2 family protein 173769 2781595 DVUA0132 Desulfovibrio vulgaris str. Hildenborough CRISPR-associated Csh2 family protein YP_009172.1 172897 D 882 CDS YP_009173.1 46562279 2781587 173771..174409 1 NC_005863.1 identified by match to protein family HMM TIGR00372; CRISPR-associated Cas4 family protein 174409 2781587 DVUA0133 Desulfovibrio vulgaris str. Hildenborough CRISPR-associated Cas4 family protein YP_009173.1 173771 D 882 CDS YP_009174.1 46562259 2781520 174393..175424 1 NC_005863.1 identified by similarity to OMNI:CT1130; match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 175424 cas1 2781520 cas1 Desulfovibrio vulgaris str. Hildenborough CRISPR-associated Cas1 family protein YP_009174.1 174393 D 882 CDS YP_009175.1 46562258 2781581 175411..175719 1 NC_005863.1 identified by similarity to OMNI:CT1129; match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 175719 2781581 DVUA0135 Desulfovibrio vulgaris str. Hildenborough CRISPR-associated Cas2 family protein YP_009175.1 175411 D 882 CDS YP_009176.1 46562257 2781580 complement(177828..178661) 1 NC_005863.1 identified by similarity to SP:P24198; match to protein family HMM PF02535; zinc transporter ZupT 178661 zupT 2781580 zupT Desulfovibrio vulgaris str. Hildenborough zinc transporter ZupT YP_009176.1 177828 R 882 CDS YP_009177.1 46562271 2781482 complement(178783..179430) 1 NC_005863.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; response regulator 179430 2781482 DVUA0137 Desulfovibrio vulgaris str. Hildenborough response regulator YP_009177.1 178783 R 882 CDS YP_009178.1 46562256 2781579 complement(179417..181501) 1 NC_005863.1 identified by match to protein family HMM PF02518; sensor histidine kinase 181501 2781579 DVUA0138 Desulfovibrio vulgaris str. Hildenborough sensor histidine kinase YP_009178.1 179417 R 882 CDS YP_009179.1 46562255 2781578 complement(181665..183644) 1 NC_005863.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; outer membrane autotransporter 183644 2781578 DVUA0139 Desulfovibrio vulgaris str. Hildenborough outer membrane autotransporter YP_009179.1 181665 R 882 CDS YP_009180.1 46562254 2781577 complement(183659..183862) 1 NC_005863.1 hypothetical protein 183862 2781577 DVUA0140 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009180.1 183659 R 882 CDS YP_009181.1 46562253 2781576 complement(183952..184188) 1 NC_005863.1 hypothetical protein 184188 2781576 DVUA0141 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009181.1 183952 R 882 CDS YP_009182.1 46562280 2781588 complement(184272..184766) 1 NC_005863.1 hypothetical protein 184766 2781588 DVUA0142 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009182.1 184272 R 882 CDS YP_009183.1 46562252 2781575 complement(184786..186333) 1 NC_005863.1 identified by similarity to SP:P27713; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01817; Nif-specific regulatory protein 186333 nifA-2 2781575 nifA-2 Desulfovibrio vulgaris str. Hildenborough Nif-specific regulatory protein YP_009183.1 184786 R 882 CDS YP_009184.1 46562251 2781574 complement(186548..186691) 1 NC_005863.1 hypothetical protein 186691 2781574 DVUA0144 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009184.1 186548 R 882 CDS YP_009185.1 46562281 2781589 187348..191274 1 NC_005863.1 identified by similarity to GB:AAP07854.1; hypothetical protein 191274 2781589 DVUA0145 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009185.1 187348 D 882 CDS YP_009186.1 46562250 2781573 191285..191755 1 NC_005863.1 hypothetical protein 191755 2781573 DVUA0146 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009186.1 191285 D 882 CDS YP_009187.1 46562249 2781572 192334..193575 1 NC_005863.1 identified by similarity to GP:10189658; hypothetical protein 193575 2781572 DVUA0147 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009187.1 192334 D 882 CDS YP_009188.1 46562248 2781571 193583..196600 1 NC_005863.1 identified by match to protein family HMM PF00083; major facilitator superfamily protein 196600 2781571 DVUA0148 Desulfovibrio vulgaris str. Hildenborough major facilitator superfamily protein YP_009188.1 193583 D 882 CDS YP_009189.1 46562247 2781570 196632..198416 1 NC_005863.1 hypothetical protein 198416 2781570 DVUA0149 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009189.1 196632 D 882 CDS YP_009190.1 46562273 2781484 complement(198609..199346) 1 NC_005863.1 identified by match to protein family HMM PF00497; solute-binding family 1 protein 199346 2781484 DVUA0150 Desulfovibrio vulgaris str. Hildenborough solute-binding family 1 protein YP_009190.1 198609 R 882 CDS YP_009191.1 46562246 2781569 199858..200250 1 NC_005863.1 DNA-binding protein 200250 2781569 DVUA0151 Desulfovibrio vulgaris str. Hildenborough DNA-binding protein YP_009191.1 199858 D 882 CDS YP_009192.1 46562245 2781568 200240..201535 1 NC_005863.1 identified by similarity to GP:11127715; hypothetical protein 201535 2781568 DVUA0152 Desulfovibrio vulgaris str. Hildenborough hypothetical protein YP_009192.1 200240 D 882 CDS