-- dump date 20140619_064158 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 525146000001 SEQ_END SEQ_END NC_011883.1 2873437 2873437 DR NC_011883.1; contig end 2873437..2873437 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 YP_002478599.1 CDS Ddes_0001 NC_011883.1 394 618 R hypothetical protein complement(394..618) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286102 YP_002478600.1 CDS Ddes_0002 NC_011883.1 649 2220 R PFAM: Peptidase M23; KEGG: dvl:Dvul_0008 peptidase M23B; peptidase M23 complement(649..2220) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283653 YP_002478601.1 CDS Ddes_0003 NC_011883.1 2640 4013 D PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; KEGG: dvu:DVU0001 chromosomal replication initiator protein DnaA; chromosomal replication initiator DnaA domain-containing protein 2640..4013 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283654 YP_002478602.1 CDS Ddes_0004 NC_011883.1 4162 5316 D KEGG: dvu:DVU0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 4162..5316 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283655 YP_002478603.1 CDS Ddes_0005 NC_011883.1 5316 7721 D KEGG: dvl:Dvul_0005 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 5316..7721 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283656 YP_002478604.1 CDS Ddes_0006 NC_011883.1 7987 10554 D KEGG: dvl:Dvul_0004 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 7987..10554 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283657 YP_002478605.1 CDS Ddes_0007 NC_011883.1 10569 11483 D KEGG: dvl:Dvul_0003 putative lipoprotein; putative lipoprotein 10569..11483 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283658 YP_002478606.1 CDS Ddes_0008 NC_011883.1 11489 12892 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dvl:Dvul_2807 amidophosphoribosyltransferase; amidophosphoribosyltransferase 11489..12892 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283659 YP_002478607.1 CDS hisS NC_011883.1 13137 14387 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 13137..14387 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283660 YP_002478608.1 CDS aspS NC_011883.1 14407 16290 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 14407..16290 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283661 YP_002478609.1 CDS Ddes_0011 NC_011883.1 16332 16850 D KEGG: dvl:Dvul_0029 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 16332..16850 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283662 YP_002478610.1 CDS Ddes_0012 NC_011883.1 16823 17836 D KEGG: dvu:DVU3365 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 16823..17836 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283663 YP_002478611.1 CDS Ddes_0013 NC_011883.1 18207 19082 D PFAM: protein of unknown function DUF116; KEGG: dvl:Dvul_0031 hypothetical protein; hypothetical protein 18207..19082 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283664 YP_002478612.1 CDS Ddes_0014 NC_011883.1 19079 20659 D PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: lip:LI0876 tRNA and rRNA cytosine-C5-methylases; NusB/RsmB/TIM44 19079..20659 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283665 YP_002478613.1 CDS Ddes_0015 NC_011883.1 21378 22292 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dvu:DVU3360 ParB family protein; parB-like partition protein complement(21378..22292) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283666 YP_002478614.1 CDS Ddes_0016 NC_011883.1 22528 22935 D KEGG: dvl:Dvul_0036 hypothetical protein; hypothetical protein 22528..22935 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283667 YP_002478615.1 CDS Ddes_0017 NC_011883.1 23050 23838 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvl:Dvul_0037 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase complement(23050..23838) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283668 YP_002478616.1 CDS Ddes_0018 NC_011883.1 24135 24542 D PFAM: response regulator receiver; KEGG: dvl:Dvul_0150 response regulator receiver protein; response regulator receiver protein 24135..24542 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283669 YP_002478617.1 CDS Ddes_0019 NC_011883.1 24564 25394 D PFAM: DSBA oxidoreductase; KEGG: dvl:Dvul_2927 DsbA oxidoreductase; DSBA oxidoreductase 24564..25394 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283670 YP_002478618.1 CDS Ddes_0020 NC_011883.1 26392 27039 R KEGG: dvl:Dvul_0201 hypothetical protein; hypothetical protein complement(26392..27039) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283671 YP_002478619.1 CDS Ddes_0021 NC_011883.1 27922 28419 R PFAM: NLP/P60 protein; KEGG: dvu:DVU3188 NLP/P60 family protein; NLP/P60 protein complement(27922..28419) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283672 YP_002478620.1 CDS Ddes_0022 NC_011883.1 29190 32714 R PFAM: UvrD/REP helicase; KEGG: dvl:Dvul_2483 UvrD/REP helicase; UvrD/REP helicase complement(29190..32714) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283673 YP_002478621.1 CDS Ddes_0023 NC_011883.1 32728 33735 R KEGG: dvu:DVU0452 hypothetical protein; hypothetical protein complement(32728..33735) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283674 YP_002478622.1 CDS Ddes_0024 NC_011883.1 33825 36089 R PFAM: peptidase U32; KEGG: dvl:Dvul_0074 peptidase U32; peptidase U32 complement(33825..36089) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283675 YP_002478623.1 CDS Ddes_0025 NC_011883.1 36086 37102 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dvl:Dvul_0038 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(36086..37102) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283676 YP_002478624.1 CDS Ddes_0026 NC_011883.1 37280 38386 D KEGG: dvl:Dvul_1966 hypothetical protein; hypothetical protein 37280..38386 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283677 YP_002478625.1 CDS Ddes_0027 NC_011883.1 38411 39103 R PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: dvl:Dvul_0292 precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase CbiC/CobH complement(38411..39103) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283678 YP_002478626.1 CDS Ddes_0028 NC_011883.1 39141 40895 R PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dvl:Dvul_0293 cobyrinic acid a,c-diamide synthase; CobB/CobQ domain-containing protein glutamine amidotransferase complement(39141..40895) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283679 YP_002478627.1 CDS Ddes_0029 NC_011883.1 41207 41443 R KEGG: dvl:Dvul_0294 hypothetical protein; hypothetical protein complement(41207..41443) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283680 YP_002478628.1 CDS Ddes_0030 NC_011883.1 41453 42502 R PFAM: aminodeoxychorismate lyase; KEGG: dvl:Dvul_0308 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(41453..42502) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283681 YP_002478629.1 CDS Ddes_0031 NC_011883.1 42499 42921 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dvl:Dvul_0307 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF complement(42499..42921) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283682 YP_002478630.1 CDS Ddes_0032 NC_011883.1 42937 43926 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(42937..43926) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283683 YP_002478631.1 CDS Ddes_0033 NC_011883.1 43946 44620 R PFAM: peptidase M50; KEGG: lip:LI0021 Zn-dependent proteases; peptidase M50 complement(43946..44620) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283684 YP_002478632.1 CDS Ddes_0034 NC_011883.1 44686 44991 R KEGG: dvu:DVU0136 hypothetical protein; hypothetical protein complement(44686..44991) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283685 YP_002478633.1 CDS Ddes_0035 NC_011883.1 45015 45479 R TIGRFAM: C_GCAxxG_C_C family protein; KEGG: mla:Mlab_0460 hypothetical protein; C_GCAxxG_C_C family protein complement(45015..45479) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283686 YP_002478634.1 CDS Ddes_0036 NC_011883.1 45506 46495 R PFAM: nucleoside recognition domain protein; KEGG: dvl:Dvul_2272 hypothetical protein; nucleoside recognition domain-containing protein complement(45506..46495) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283687 YP_002478635.1 CDS Ddes_0037 NC_011883.1 46566 47036 R PFAM: ribonuclease H; KEGG: dvl:Dvul_2274 ribonuclease H; Ribonuclease H complement(46566..47036) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283688 YP_002478636.1 CDS Ddes_0038 NC_011883.1 47279 49024 R PFAM: chemotaxis sensory transducer; KEGG: dvu:DVU1975 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(47279..49024) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283689 YP_002478637.1 CDS Ddes_0039 NC_011883.1 49852 51273 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(49852..51273) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283690 YP_002478638.1 CDS Ddes_0040 NC_011883.1 51376 52299 R PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dvl:Dvul_2348 methyltransferase type 11; ArsR family transcriptional regulator complement(51376..52299) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283691 YP_002478639.1 CDS Ddes_0041 NC_011883.1 52442 52972 D PFAM: protein of unknown function DUF721; KEGG: dvl:Dvul_2350 hypothetical protein; hypothetical protein 52442..52972 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283692 YP_002478640.1 CDS Ddes_0042 NC_011883.1 53493 53870 D KEGG: dvl:Dvul_2048 hypothetical protein; hypothetical protein 53493..53870 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283693 YP_002478641.1 CDS Ddes_0043 NC_011883.1 54382 55287 R KEGG: dvl:Dvul_2321 hypothetical protein; hypothetical protein complement(54382..55287) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283694 YP_002478642.1 CDS Ddes_0044 NC_011883.1 55813 59364 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: dvl:Dvul_0306 FAD linked oxidase domain-containing protein; FAD linked oxidase domain-containing protein 55813..59364 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283695 YP_002478643.1 CDS Ddes_0045 NC_011883.1 59454 60860 R KEGG: lip:LI0261 glutamate decarboxylase isozyme; TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; glutamate decarboxylase complement(59454..60860) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283696 YP_002478644.1 CDS Ddes_0046 NC_011883.1 60864 62351 R PFAM: amino acid permease-associated region; KEGG: lip:LI0262 amino acid transporters; amino acid permease-associated protein complement(60864..62351) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283697 YP_002478645.1 CDS Ddes_0047 NC_011883.1 62754 64253 D PFAM: amino acid permease-associated region; KEGG: sfv:SFV_2499 putative amino acid antiporter; amino acid permease-associated protein 62754..64253 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283698 YP_002478646.1 CDS Ddes_0048 NC_011883.1 64339 65271 D catalyzes the formation of glutamate from glutamine; glutaminase 64339..65271 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283699 YP_002478647.1 CDS Ddes_0049 NC_011883.1 65454 66422 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: sen:SACE_4268 AraC family transcription regulator; AraC family transcriptional regulator complement(65454..66422) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283700 YP_002478648.1 CDS Ddes_0050 NC_011883.1 66603 67442 D PFAM: ThiJ/PfpI domain protein; KEGG: plu:plu3545 hypothetical protein; ThiJ/PfpI domain-containing protein 66603..67442 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283701 YP_002478649.1 CDS Ddes_0051 NC_011883.1 67564 68517 R PFAM: band 7 protein; KEGG: cts:Ctha_1815 band 7 protein; hypothetical protein complement(67564..68517) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283702 YP_002478650.1 CDS Ddes_0052 NC_011883.1 68695 69171 R PFAM: protein of unknown function DUF107; KEGG: dps:DP1870 hypothetical protein; hypothetical protein complement(68695..69171) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283703 YP_002478651.1 CDS Ddes_0053 NC_011883.1 69297 70250 R KEGG: dvl:Dvul_2440 hypothetical protein; hypothetical protein complement(69297..70250) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283704 YP_002478652.1 CDS Ddes_0054 NC_011883.1 70353 72584 R KEGG: dvl:Dvul_2438 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(70353..72584) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283705 YP_002478653.1 CDS rpsO NC_011883.1 72753 73022 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(72753..73022) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283706 YP_002478654.1 CDS Ddes_0056 NC_011883.1 73067 74131 R TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dvl:Dvul_2436 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B complement(73067..74131) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283707 YP_002478655.1 CDS Ddes_0057 NC_011883.1 74700 75809 R PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: lip:LI0536 exopolyphosphatase-like protein; phosphoesterase RecJ domain-containing protein complement(74700..75809) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283708 YP_002478656.1 CDS Ddes_0058 NC_011883.1 75796 76113 R PFAM: protein of unknown function DUF503; KEGG: dvl:Dvul_2434 hypothetical protein; hypothetical protein complement(75796..76113) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283709 YP_002478657.1 CDS infB NC_011883.1 76502 79495 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(76502..79495) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283710 YP_002478658.1 CDS Ddes_0060 NC_011883.1 79488 79733 R PFAM: protein of unknown function DUF448; KEGG: dvu:DVU0509 hypothetical protein; hypothetical protein complement(79488..79733) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283711 YP_002478659.1 CDS nusA NC_011883.1 79744 81093 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(79744..81093) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283712 YP_002478660.1 CDS Ddes_0062 NC_011883.1 81202 81978 R PFAM: protein of unknown function DUF150; KEGG: dvl:Dvul_2430 hypothetical protein; hypothetical protein complement(81202..81978) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283713 YP_002478661.1 CDS Ddes_0063 NC_011883.1 82479 84047 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; KEGG: dvl:Dvul_1295 methyl-accepting chemotaxis sensory transducer; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 82479..84047 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283714 YP_002478662.1 CDS Ddes_0064 NC_011883.1 84087 85394 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dvl:Dvul_2698 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(84087..85394) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283715 YP_002478663.1 CDS Ddes_0065 NC_011883.1 85516 86025 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dvl:Dvul_2696 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 85516..86025 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283716 YP_002478664.1 CDS Ddes_0066 NC_011883.1 86356 86835 D hypothetical protein 86356..86835 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283717 YP_002478665.1 CDS Ddes_0067 NC_011883.1 87314 87829 D PFAM: YceI family protein; KEGG: ote:Oter_2283 YceI family protein; hypothetical protein 87314..87829 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283718 YP_002478666.1 CDS Ddes_0068 NC_011883.1 88910 89551 R PFAM: class II aldolase/adducin family protein; KEGG: dvl:Dvul_2810 class II aldolase/adducin family protein; class II aldolase/adducin family protein complement(88910..89551) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283719 YP_002478667.1 CDS Ddes_0069 NC_011883.1 89548 90456 R PFAM: glycosyl transferase family 2; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein; family 2 glycosyl transferase complement(89548..90456) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283720 YP_002478668.1 CDS Ddes_0070 NC_011883.1 90458 91528 R KEGG: dvu:DVU0157 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; thiamine-monophosphate kinase complement(90458..91528) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283721 YP_002478669.1 CDS Ddes_0071 NC_011883.1 91530 93836 R PFAM: UvrD/REP helicase; KEGG: dvl:Dvul_2812 UvrD/REP helicase; UvrD/REP helicase complement(91530..93836) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283722 YP_002478670.1 CDS Ddes_0072 NC_011883.1 94442 94975 D KEGG: dvu:DVU3281 hypothetical protein; hypothetical protein 94442..94975 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283723 YP_002478671.1 CDS Ddes_0073 NC_011883.1 95095 95772 D PFAM: putative rRNA methylase; KEGG: gme:Gmet_2819 putative rRNA methylase; putative rRNA methylase 95095..95772 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283724 YP_002478672.1 CDS Ddes_0074 NC_011883.1 96075 96959 D TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: dvu:DVU0421 agmatinase, putative; agmatinase 96075..96959 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283725 YP_002478673.1 CDS Ddes_0075 NC_011883.1 97190 98023 D KEGG: efa:EF1860 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 97190..98023 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283726 YP_002478674.1 CDS Ddes_0076 NC_011883.1 98174 99106 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: bth:BT_1219 hypothetical protein; Dyp-type peroxidase family protein complement(98174..99106) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283727 YP_002478675.1 CDS Ddes_0077 NC_011883.1 99214 102474 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: dvu:DVU0256 DEAD-box ATP dependent DNA helicase; DEAD/DEAH box helicase complement(99214..102474) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283728 YP_002478676.1 CDS Ddes_0078 NC_011883.1 102489 103223 R PFAM: transferase hexapeptide repeat containing protein; KEGG: dvl:Dvul_2637 hexapaptide repeat-containing transferase; transferase hexapeptide repeat containing protein complement(102489..103223) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283729 YP_002478677.1 CDS Ddes_0079 NC_011883.1 103413 103958 R PFAM: NADPH-dependent FMN reductase; KEGG: dar:Daro_2797 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) complement(103413..103958) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283730 YP_002478678.1 CDS Ddes_0080 NC_011883.1 104183 104602 R KEGG: sth:STH3036 hypothetical protein; hypothetical protein complement(104183..104602) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283731 YP_002478679.1 CDS Ddes_0081 NC_011883.1 104886 106469 R PFAM: cytochrome c552; KEGG: dvl:Dvul_2333 nitrite reductase (cytochrome; ammonia-forming); Nitrite reductase complement(104886..106469) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283732 YP_002478680.1 CDS Ddes_0082 NC_011883.1 106462 106929 R KEGG: dvl:Dvul_2334 NapC/NirT cytochrome c family protein; NapC/NirT cytochrome c family protein complement(106462..106929) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283733 YP_002478681.1 CDS Ddes_0083 NC_011883.1 107283 109907 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: dvl:Dvul_2335 multi-sensor hybrid histidine kinase; Hpt sensor hybrid histidine kinase 107283..109907 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283734 YP_002478682.1 CDS Ddes_0084 NC_011883.1 109907 111439 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvl:Dvul_2336 two component, sigma54 specific, Fis family transcriptional regulator; putative Fis family two component sigma-54 specific transcriptional regulator 109907..111439 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283735 YP_002478683.1 CDS Ddes_0085 NC_011883.1 111867 112124 D KEGG: dvl:Dvul_2341 hypothetical protein; hypothetical protein 111867..112124 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283736 YP_002478684.1 CDS Ddes_0086 NC_011883.1 112349 114148 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dvu:DVU0344 methyl-accepting chemotaxis protein; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(112349..114148) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283737 YP_002478685.1 CDS Ddes_0087 NC_011883.1 115009 115284 R PFAM: histone family protein DNA-binding protein; KEGG: dvl:Dvul_2207 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(115009..115284) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283739 YP_002478686.1 CDS Ddes_0088 NC_011883.1 115635 116570 R KEGG: dvl:Dvul_2202 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(115635..116570) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283740 YP_002478687.1 CDS Ddes_0089 NC_011883.1 116616 117569 R PFAM: protein of unknown function DUF81; KEGG: dvu:DVU0770 hypothetical protein; hypothetical protein complement(116616..117569) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283741 YP_002478688.1 CDS hisH NC_011883.1 117878 118531 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 117878..118531 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283742 YP_002478689.1 CDS Ddes_0091 NC_011883.1 118521 119300 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 118521..119300 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283743 YP_002478690.1 CDS Ddes_0092 NC_011883.1 119529 120461 D KEGG: dvl:Dvul_0429 hypothetical protein; hypothetical protein 119529..120461 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283744 YP_002478691.1 CDS Ddes_0093 NC_011883.1 120493 120726 D KEGG: dvl:Dvul_0428 hypothetical protein; hypothetical protein 120493..120726 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283745 YP_002478692.1 CDS Ddes_0094 NC_011883.1 121331 121672 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dvl:Dvul_0427 FmdB family regulatory protein; FmdB family regulatory protein 121331..121672 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283746 YP_002478693.1 CDS Ddes_0095 NC_011883.1 121680 122990 D TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: dvl:Dvul_0426 adenylosuccinate lyase; adenylosuccinate lyase 121680..122990 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283747 YP_002478694.1 CDS Ddes_0096 NC_011883.1 123003 123584 D KEGG: dvl:Dvul_0425 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 123003..123584 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283748 YP_002478695.1 CDS Ddes_0097 NC_011883.1 123760 126228 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dvl:Dvul_0424 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 123760..126228 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283749 YP_002478696.1 CDS Ddes_0098 NC_011883.1 126225 126971 D KEGG: dvl:Dvul_0423 hypothetical protein; hypothetical protein 126225..126971 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283750 YP_002478697.1 CDS Ddes_0099 NC_011883.1 127384 129690 R PFAM: aconitate hydratase domain protein; KEGG: dsy:DSY4204 hypothetical protein; hypothetical protein complement(127384..129690) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283751 YP_002478698.1 CDS Ddes_0100 NC_011883.1 129739 130443 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bcz:BCZK2117 homoserine/threonine efflux protein; lysine exporter protein LysE/YggA complement(129739..130443) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283752 YP_002478699.1 CDS Ddes_0101 NC_011883.1 130685 131827 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dvl:Dvul_2464 isocitrate/isopropylmalate dehydrogenase; isocitrate/isopropylmalate dehydrogenase complement(130685..131827) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283753 YP_002478700.1 CDS Ddes_0102 NC_011883.1 131915 133750 R PFAM: pyruvate carboxyltransferase; KEGG: dvl:Dvul_2536 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(131915..133750) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283754 YP_002478701.1 CDS Ddes_0103 NC_011883.1 133985 136192 D PFAM: ribonuclease II; KEGG: dvl:Dvul_0179 ribonuclease II; ribonuclease II 133985..136192 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283755 YP_002478702.1 CDS Ddes_0104 NC_011883.1 136302 136973 D PFAM: protein of unknown function DUF205; KEGG: dvl:Dvul_0178 hypothetical protein; membrane protein 136302..136973 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283756 YP_002478703.1 CDS Ddes_0105 NC_011883.1 137283 138728 D KEGG: dvl:Dvul_0177 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 137283..138728 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283757 YP_002478704.1 CDS Ddes_0106 NC_011883.1 138947 139396 D PFAM: transcription activator effector binding; KEGG: aoe:Clos_2726 transcription activator effector binding; transcription activator effector binding protein 138947..139396 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283758 YP_002478705.1 CDS Ddes_0107 NC_011883.1 139534 140883 R KEGG: dvl:Dvul_2655 sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(139534..140883) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283759 YP_002478706.1 CDS Ddes_0108 NC_011883.1 141243 142391 R PFAM: glycosyl transferase group 1; KEGG: dvl:Dvul_2654 glycosyl transferase, group 1; group 1 glycosyl transferase complement(141243..142391) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283760 YP_002478707.1 CDS Ddes_0109 NC_011883.1 142663 143685 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: dvl:Dvul_2662 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 142663..143685 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283761 YP_002478708.1 CDS Ddes_0110 NC_011883.1 143616 144128 R KEGG: similar to CREB-regulated transcription coactivator 1 (Transducer of regulated cAMP response element-binding protein 1) (Transducer of CREB protein 1) (Mucoepidermoid carcinoma translocated protein 1); hypothetical protein complement(143616..144128) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283762 YP_002478709.1 CDS Ddes_0111 NC_011883.1 144617 144919 D hypothetical protein 144617..144919 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283763 YP_002478710.1 CDS Ddes_0112 NC_011883.1 144921 146207 D PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; KEGG: chy:CHY_2391 glycine reductase proprotein GrdE; Sarcosine reductase 144921..146207 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283764 YP_002478711.1 CDS Ddes_0113 NC_011883.1 146239 147543 D KEGG: aoe:Clos_0958 selenoprotein B; Contains selenocysteine; TIGRFAM: glycine reductase, selenoprotein B; selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; PFAM: Selenoprotein B glycine/betaine/sarcosine/D-proline reductase; glycine/betaine/sarcosine/D-proline reductase family selenoprotein B 146239..147543 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283765 YP_002478712.1 CDS Ddes_0114 NC_011883.1 147790 148704 D KEGG: pth:PTH_1417 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; thioredoxin reductase 147790..148704 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283766 YP_002478713.1 CDS Ddes_0115 NC_011883.1 148840 150375 D KEGG: chy:CHY_2394 glycine reductase complex, protein C; betaine reductase 148840..150375 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283767 YP_002478714.1 CDS Ddes_0116 NC_011883.1 150386 151552 D PFAM: fatty acid synthesis plsX protein; KEGG: cpo:COPRO5265_0228 fatty acid/phospholipid synthesis protein PlsX; glycine reductase 150386..151552 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283768 YP_002478715.1 CDS Ddes_0117 NC_011883.1 151657 151974 D PFAM: Thioredoxin domain; KEGG: sth:STH2871 thioredoxin; thioredoxin domain-containing protein 151657..151974 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283769 YP_002478716.1 CDS Ddes_0118 NC_011883.1 152085 152561 D GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A 152085..152561 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283770 YP_002478717.1 CDS Ddes_0119 NC_011883.1 153006 154763 D PFAM: chemotaxis sensory transducer; KEGG: dvl:Dvul_0942 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 153006..154763 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283771 YP_002478718.1 CDS Ddes_0120 NC_011883.1 155018 156361 D KEGG: csa:Csal_0252 deoxyguanosinetriphosphate triphosphohydrolase-like protein; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 155018..156361 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283772 YP_002478719.1 CDS Ddes_0121 NC_011883.1 156445 156714 D hypothetical protein 156445..156714 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283773 YP_002478720.1 CDS Ddes_0122 NC_011883.1 156734 157333 R KEGG: afu:AF0288 adenylylsulfate kinase; adenylylsulfate kinase-like protein complement(156734..157333) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283774 YP_002478721.1 CDS Ddes_0123 NC_011883.1 158014 159072 D PFAM: polysaccharide deacetylase; KEGG: dvl:Dvul_2705 polysaccharide deacetylase; polysaccharide deacetylase 158014..159072 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283777 YP_002478722.1 CDS Ddes_0124 NC_011883.1 159509 160729 R TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dvu:DVU0419 carboxynorspermidine decarboxylase; carboxynorspermidine decarboxylase complement(159509..160729) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283778 YP_002478723.1 CDS Ddes_0125 NC_011883.1 161550 162761 R PFAM: Saccharopine dehydrogenase; KEGG: dvl:Dvul_2516 saccharopine dehydrogenase; saccharopine dehydrogenase complement(161550..162761) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283779 YP_002478724.1 CDS Ddes_0126 NC_011883.1 162945 164366 R PFAM: histone deacetylase superfamily; KEGG: dvl:Dvul_1093 histone deacetylase superfamily protein; histone deacetylase superfamily protein complement(162945..164366) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283780 YP_002478725.1 CDS Ddes_0127 NC_011883.1 164359 164700 R hypothetical protein complement(164359..164700) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283781 YP_002478726.1 CDS Ddes_0128 NC_011883.1 164931 165584 R PFAM: thymidylate kinase; KEGG: dvu:DVU2140 thymidylate kinase; dTMP kinase complement(164931..165584) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283782 YP_002478727.1 CDS Ddes_0129 NC_011883.1 165560 166591 R KEGG: dvl:Dvul_1091 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(165560..166591) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283783 YP_002478728.1 CDS Ddes_0130 NC_011883.1 166710 167483 D KEGG: dvl:Dvul_1090 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 166710..167483 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283784 YP_002478729.1 CDS Ddes_0131 NC_011883.1 167914 168840 D KEGG: dvl:Dvul_1089 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 167914..168840 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283785 YP_002478730.1 CDS Ddes_0132 NC_011883.1 168871 169875 D KEGG: dvl:Dvul_1088 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 168871..169875 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283786 YP_002478731.1 CDS Ddes_0133 NC_011883.1 170136 171086 R PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: lip:LI0081 nucleoside-diphosphate sugar epimerase; hypothetical protein complement(170136..171086) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283787 YP_002478732.1 CDS Ddes_0134 NC_011883.1 171294 173720 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dvu:DVU1975 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(171294..173720) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283788 YP_002478733.1 CDS Ddes_0135 NC_011883.1 174349 174888 R PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: lip:LI0792 ferredoxin oxidoreductases, gamma subunit; pyruvate ferredoxin/flavodoxin oxidoreductase complement(174349..174888) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283789 YP_002478734.1 CDS Ddes_0136 NC_011883.1 174881 175732 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: lip:LI0791 ferredoxin oxidoreductases, beta subunit; thiamine pyrophosphate domain-containing TPP-binding protein complement(174881..175732) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283790 YP_002478735.1 CDS Ddes_0137 NC_011883.1 175735 176844 R catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase complement(175735..176844) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283791 YP_002478736.1 CDS Ddes_0138 NC_011883.1 176841 177065 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0044 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(176841..177065) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283792 YP_002478737.1 CDS queA NC_011883.1 177275 178372 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(177275..178372) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283793 YP_002478738.1 CDS Ddes_0140 NC_011883.1 178503 179102 D KEGG: dvl:Dvul_0042 putative lipoprotein; hypothetical protein 178503..179102 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283794 YP_002478739.1 CDS Ddes_0141 NC_011883.1 179099 180352 D TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: dvl:Dvul_0041 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 179099..180352 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283795 YP_002478740.1 CDS Ddes_0142 NC_011883.1 180334 181278 D KEGG: dvl:Dvul_0040 hypothetical protein; hypothetical protein 180334..181278 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283796 YP_002478741.1 CDS Ddes_0143 NC_011883.1 181754 182137 D KEGG: bth:BT_2176 hypothetical protein; hypothetical protein 181754..182137 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283797 YP_002478742.1 CDS Ddes_0144 NC_011883.1 182134 182733 D PFAM: protein of unknown function DUF340 membrane; KEGG: bvu:BVU_1366 hypothetical protein; hypothetical protein 182134..182733 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283798 YP_002478743.1 CDS Ddes_0145 NC_011883.1 182970 183662 D KEGG: dvl:Dvul_2682 hypothetical protein; hypothetical protein 182970..183662 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283799 YP_002478744.1 CDS Ddes_0146 NC_011883.1 183917 185194 R KEGG: gsu:GSU1966 hypothetical protein; hypothetical protein complement(183917..185194) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283800 YP_002478745.1 CDS Ddes_0147 NC_011883.1 185856 186821 R PFAM: response regulator receiver; CheW domain protein; KEGG: lip:LI1117 chemotaxis signal transduction protein; response regulator receiver modulated CheW protein complement(185856..186821) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283801 YP_002478746.1 CDS Ddes_0148 NC_011883.1 186957 187091 R hypothetical protein complement(186957..187091) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283802 YP_002478747.1 CDS Ddes_0149 NC_011883.1 187216 188136 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dvl:Dvul_2297 cysteine synthases; cysteine synthase complement(187216..188136) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283803 YP_002478748.1 CDS Ddes_0150 NC_011883.1 188356 188817 D KEGG: ppd:Ppro_0148 hypothetical protein; hypothetical protein 188356..188817 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283804 YP_002478749.1 CDS Ddes_0151 NC_011883.1 189130 190533 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dps:DP0303 dihydrolipoamide dehydrogenase, E3 component; dihydrolipoamide dehydrogenase complement(189130..190533) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283805 YP_002478750.1 CDS Ddes_0152 NC_011883.1 190703 191095 R TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: nph:NP4772A glycin cleavage system H protein; glycine cleavage system H protein complement(190703..191095) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283806 YP_002478751.1 CDS Ddes_0153 NC_011883.1 191290 191751 R PFAM: OsmC family protein; KEGG: drm:Dred_2833 OsmC family protein; OsmC family protein complement(191290..191751) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283807 YP_002478752.1 CDS Ddes_0154 NC_011883.1 191764 193359 R PFAM: Na+/solute symporter; KEGG: drm:Dred_2834 Na+/solute symporter; Na+/solute symporter complement(191764..193359) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283808 YP_002478753.1 CDS Ddes_0155 NC_011883.1 193883 195607 R PFAM: CBS domain containing protein; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: drm:Dred_2835 putative PAS/PAC sensor protein; Fis family sigma-54 specific transcriptional regulator complement(193883..195607) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283809 YP_002478754.1 CDS Ddes_0156 NC_011883.1 196044 197060 R KEGG: dvl:Dvul_2386 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(196044..197060) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283810 YP_002478755.1 CDS Ddes_0157 NC_011883.1 197096 197215 D hypothetical protein 197096..197215 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283811 YP_002478756.1 CDS Ddes_0158 NC_011883.1 197234 197788 R PFAM: GAF domain protein; KEGG: dvl:Dvul_2385 putative GAF sensor protein; putative phytochrome sensor protein complement(197234..197788) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283812 YP_002478757.1 CDS Ddes_0159 NC_011883.1 197973 198314 R PFAM: protein of unknown function DUF583; KEGG: dvl:Dvul_2189 hypothetical protein; hypothetical protein complement(197973..198314) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283813 YP_002478758.1 CDS Ddes_0160 NC_011883.1 198340 199446 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dvl:Dvul_2188 rod shape-determining protein RodA; rod shape-determining protein RodA complement(198340..199446) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283814 YP_002478759.1 CDS Ddes_0161 NC_011883.1 199816 201738 R KEGG: dvu:DVU0786 penicillin-binding protein; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(199816..201738) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283815 YP_002478760.1 CDS Ddes_0162 NC_011883.1 201722 202192 R KEGG: dvl:Dvul_2186 hypothetical protein; hypothetical protein complement(201722..202192) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283816 YP_002478761.1 CDS Ddes_0163 NC_011883.1 202189 203079 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(202189..203079) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283817 YP_002478762.1 CDS Ddes_0164 NC_011883.1 203485 204525 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(203485..204525) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283818 YP_002478763.1 CDS Ddes_0165 NC_011883.1 204767 205810 D KEGG: dvl:Dvul_2183 putative radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 204767..205810 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283819 YP_002478764.1 CDS Ddes_0166 NC_011883.1 205832 207637 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dvl:Dvul_0339 methyl-accepting chemotaxis sensory transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(205832..207637) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283820 YP_002478765.1 CDS Ddes_0167 NC_011883.1 208332 209456 R PFAM: integrase family protein; TOBE domain protein; KEGG: dvl:Dvul_2790 TOBE domain-containing protein; TOBE domain-containing protein complement(208332..209456) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283821 YP_002478766.1 CDS Ddes_0168 NC_011883.1 209612 210364 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dvu:DVU0177 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 209612..210364 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283822 YP_002478767.1 CDS Ddes_0169 NC_011883.1 210553 211233 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2788 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit 210553..211233 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283823 YP_002478768.1 CDS Ddes_0170 NC_011883.1 211230 212006 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2789 ABC transporter related; ABC transporter-like protein 211230..212006 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283824 YP_002478769.1 CDS Ddes_0171 NC_011883.1 213021 214136 D KEGG: mta:Moth_2167 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 213021..214136 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283825 YP_002478770.1 CDS Ddes_0172 NC_011883.1 214362 215768 D PFAM: amino acid permease-associated region; KEGG: btl:BALH_0632 amino acid permease, proline-specific permease; amino acid permease-associated protein 214362..215768 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283826 YP_002478771.1 CDS Ddes_0173 NC_011883.1 215970 217142 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pgn:PGN_1120 putative NADPH-NAD transhydrogenase; NAD(P)(+) transhydrogenase 215970..217142 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283827 YP_002478772.1 CDS Ddes_0174 NC_011883.1 217227 217508 D KEGG: pgn:PGN_1121 probable NADPH-NAD transhydrogenase alpha subunit; putative NADPH-NAD transhydrogenase alpha subunit 217227..217508 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283828 YP_002478773.1 CDS Ddes_0175 NC_011883.1 217562 220606 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: pgn:PGN_1122 NADPH-NAD transhydrogenase beta subunit; NAD(P)(+) transhydrogenase 217562..220606 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283829 YP_002478774.1 CDS Ddes_0178 NC_011883.1 222806 224845 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(222806..224845) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283832 YP_002478775.1 CDS Ddes_0179 NC_011883.1 225292 226527 R KEGG: bbt:BBta_5626 hydrolase domain-containing protein; hypothetical protein complement(225292..226527) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283833 YP_002478776.1 CDS Ddes_0180 NC_011883.1 226543 228207 R PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: gvi:gll0947 alginate O-acetylation protein; membrane bound O-acyl transferase MBOAT family protein complement(226543..228207) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283834 YP_002478777.1 CDS Ddes_0181 NC_011883.1 228424 228711 R PFAM: histone family protein DNA-binding protein; KEGG: dvl:Dvul_2538 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(228424..228711) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283835 YP_002478778.1 CDS Ddes_0182 NC_011883.1 228936 230141 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: lip:LI0429 coproporphyrinogen III oxidase-like protein; radical SAM protein 228936..230141 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283836 YP_002478779.1 CDS Ddes_0183 NC_011883.1 230563 232653 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dvl:Dvul_2346 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 230563..232653 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283837 YP_002478780.1 CDS Ddes_0184 NC_011883.1 233201 233575 D hypothetical protein 233201..233575 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283838 YP_002478781.1 CDS Ddes_0185 NC_011883.1 233951 234406 R KEGG: dvl:Dvul_0015 zinc resistance-associated protein; hypothetical protein complement(233951..234406) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283839 YP_002478782.1 CDS Ddes_0186 NC_011883.1 234547 236112 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvl:Dvul_0016 signal transduction histidine kinase, nitrogen specific, NtrB; sensor protein ZraS 234547..236112 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283840 YP_002478783.1 CDS Ddes_0187 NC_011883.1 236171 237544 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvl:Dvul_0017 two component, sigma54 specific, Fis family transcriptional regulator; Fis family two component sigma-54 specific transcriptional regulator 236171..237544 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283841 YP_002478784.1 CDS Ddes_0188 NC_011883.1 237768 238373 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_0799 metal dependent phosphohydrolase; metal dependent phosphohydrolase 237768..238373 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283842 YP_002478785.1 CDS Ddes_0189 NC_011883.1 238508 239965 D PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cpy:Cphy_2835 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 238508..239965 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283843 YP_002478786.1 CDS Ddes_0190 NC_011883.1 240081 240863 R TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: predicted protein; K00930 acetylglutamate kinase; acetylglutamate kinase complement(240081..240863) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283844 YP_002478787.1 CDS Ddes_0191 NC_011883.1 241110 243110 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_1726 multi-sensor hybrid histidine kinase; histidine kinase 241110..243110 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283845 YP_002478788.1 CDS gltX NC_011883.1 243345 244736 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 243345..244736 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283846 YP_002478789.1 CDS Ddes_0193 NC_011883.1 244998 245789 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: lip:LI0532 flagellar biosynthesis pathway, component FliR; flagellar biosynthetic protein FliR complement(244998..245789) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283847 YP_002478790.1 CDS Ddes_0194 NC_011883.1 245911 247482 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2158 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(245911..247482) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283848 YP_002478791.1 CDS Ddes_0197 NC_011883.1 248585 249625 R PFAM: response regulator receiver; CheW domain protein; KEGG: dvl:Dvul_1997 putative CheW protein; response regulator receiver modulated CheW protein complement(248585..249625) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283851 YP_002478792.1 CDS Ddes_0198 NC_011883.1 249832 250518 R KEGG: dvl:Dvul_1999 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; Endonuclease III/Nth; SMART: iron-sulfur cluster loop; endonuclease III complement(249832..250518) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283852 YP_002478793.1 CDS Ddes_0199 NC_011883.1 250642 250965 D PFAM: CutA1 divalent ion tolerance protein; KEGG: afw:Anae109_1180 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 250642..250965 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283853 YP_002478794.1 CDS Ddes_0200 NC_011883.1 251096 252052 D PFAM: PfkB domain protein; KEGG: dvl:Dvul_2001 ribokinase-like domain-containing protein; PfkB domain-containing protein 251096..252052 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283854 YP_002478795.1 CDS Ddes_0201 NC_011883.1 252186 252638 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_2338 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 252186..252638 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283855 YP_002478796.1 CDS Ddes_0202 NC_011883.1 252951 253379 D PFAM: protein of unknown function DUF606; KEGG: gme:Gmet_2636 hypothetical protein; hypothetical protein 252951..253379 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283856 YP_002478797.1 CDS Ddes_0203 NC_011883.1 253494 253967 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dvl:Dvul_0019 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 253494..253967 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283857 YP_002478798.1 CDS Ddes_0204 NC_011883.1 254051 254338 R PFAM: protein of unknown function DUF134; KEGG: dsy:DSY3441 hypothetical protein; hypothetical protein complement(254051..254338) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283858 YP_002478799.1 CDS Ddes_0205 NC_011883.1 254740 255009 R KEGG: dol:Dole_0573 hypothetical protein; hypothetical protein complement(254740..255009) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283859 YP_002478800.1 CDS Ddes_0206 NC_011883.1 255653 256000 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: trq:TRQ2_1532 cupin 2 domain-containing protein; cupin complement(255653..256000) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283860 YP_002478801.1 CDS Ddes_0207 NC_011883.1 256098 259043 R PFAM: MscS Mechanosensitive ion channel; KEGG: dvu:DVU1544 mechanosensitive ion channel family protein; mechanosensitive ion channel MscS complement(256098..259043) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283861 YP_002478802.1 CDS Ddes_0208 NC_011883.1 259223 260269 D PFAM: protein of unknown function DUF362; KEGG: dvu:DVU3036 hypothetical protein; hypothetical protein 259223..260269 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283862 YP_002478803.1 CDS Ddes_0209 NC_011883.1 260281 260916 D KEGG: dvl:Dvul_1139 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 260281..260916 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283863 YP_002478804.1 CDS Ddes_0210 NC_011883.1 261062 261979 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bcj:BCAL1417 LysR family regulatory protein; LysR family transcriptional regulator complement(261062..261979) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283864 YP_002478805.1 CDS Ddes_0211 NC_011883.1 262112 262501 D PFAM: LrgA family protein; KEGG: dsy:DSY3772 hypothetical protein; LrgA family protein 262112..262501 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283865 YP_002478806.1 CDS Ddes_0212 NC_011883.1 262486 263199 D PFAM: LrgB family protein; KEGG: gbm:Gbem_2907 LrgB family protein; LrgB family protein 262486..263199 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283866 YP_002478807.1 CDS Ddes_0214 NC_011883.1 264835 266007 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pgn:PGN_1120 putative NADPH-NAD transhydrogenase; NAD(P)(+) transhydrogenase 264835..266007 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283868 YP_002478808.1 CDS Ddes_0215 NC_011883.1 266092 266373 D KEGG: pgn:PGN_1121 probable NADPH-NAD transhydrogenase alpha subunit; putative NADPH-NAD transhydrogenase alpha subunit 266092..266373 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283869 YP_002478809.1 CDS Ddes_0216 NC_011883.1 266427 268928 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: pgn:PGN_1122 NADPH-NAD transhydrogenase beta subunit; NAD(P)(+) transhydrogenase 266427..268928 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283870 YP_002478810.1 CDS Ddes_0217 NC_011883.1 268934 269539 D hypothetical protein 268934..269539 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283871 YP_002478811.1 CDS Ddes_0218 NC_011883.1 269497 270855 D PFAM: aminotransferase class-III; KEGG: pin:Ping_0051 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; class III aminotransferase 269497..270855 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283872 YP_002478812.1 CDS Ddes_0219 NC_011883.1 271014 272831 R KEGG: dps:DP0355 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; Fis family PAS modulated sigma54 specific transcriptional regulator complement(271014..272831) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283873 YP_002478813.1 CDS Ddes_0220 NC_011883.1 273168 274910 D catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase 273168..274910 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283874 YP_002478814.1 CDS Ddes_0221 NC_011883.1 275079 276551 D PFAM: amino acid permease-associated region; KEGG: dps:DP0547 amino acid transporter; amino acid permease-associated protein 275079..276551 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283875 YP_002478815.1 CDS Ddes_0222 NC_011883.1 277508 278539 R PFAM: integrase family protein; KEGG: dvl:Dvul_1487 phage integrase family protein; integrase family protein complement(277508..278539) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283876 YP_002478816.1 CDS Ddes_0223 NC_011883.1 278544 278927 R hypothetical protein complement(278544..278927) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283877 YP_002478817.1 CDS Ddes_0224 NC_011883.1 279047 279469 D hypothetical protein 279047..279469 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283878 YP_002478818.1 CDS Ddes_0225 NC_011883.1 279541 280083 D PFAM: BRO domain protein; KEGG: ppw:PputW619_1315 prophage antirepressor; prophage antirepressor 279541..280083 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283879 YP_002478819.1 CDS Ddes_0226 NC_011883.1 280583 280843 D PFAM: protein of unknown function DUF497; KEGG: gur:Gura_0581 hypothetical protein; hypothetical protein 280583..280843 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283880 YP_002478820.1 CDS Ddes_0227 NC_011883.1 280833 281087 D KEGG: dvl:Dvul_1495 CopG family protein; hypothetical protein 280833..281087 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283881 YP_002478821.1 CDS Ddes_0228 NC_011883.1 281236 281439 D PFAM: protein of unknown function DUF37; KEGG: ilo:IL2081 alpha-hemolysin family protein; hypothetical protein 281236..281439 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283882 YP_002478822.1 CDS Ddes_0229 NC_011883.1 281464 281712 D KEGG: ypi:YpsIP31758_1761 hypothetical protein; hypothetical protein 281464..281712 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283883 YP_002478823.1 CDS Ddes_0230 NC_011883.1 281725 282606 D KEGG: ava:Ava_0171 hypothetical protein; hypothetical protein 281725..282606 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283884 YP_002478824.1 CDS Ddes_0231 NC_011883.1 282615 283364 D PFAM: Gp37Gp68 family protein; KEGG: rca:Rcas_0327 Gp37Gp68 family protein; Gp37Gp68 family protein 282615..283364 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283885 YP_002478825.1 CDS Ddes_0232 NC_011883.1 283391 283552 R hypothetical protein complement(283391..283552) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283886 YP_002478826.1 CDS Ddes_0233 NC_011883.1 283688 283942 R KEGG: esa:ESA_00350 hypothetical protein; hypothetical protein complement(283688..283942) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283887 YP_002478827.1 CDS Ddes_0234 NC_011883.1 284293 284514 D hypothetical protein 284293..284514 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283888 YP_002478828.1 CDS Ddes_0235 NC_011883.1 284511 284972 D hypothetical protein 284511..284972 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283889 YP_002478829.1 CDS Ddes_0236 NC_011883.1 285017 285397 R KEGG: mmw:Mmwyl1_0594 hypothetical protein; hypothetical protein complement(285017..285397) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283890 YP_002478830.1 CDS Ddes_0237 NC_011883.1 285407 285649 R PFAM: transcriptional activator Ogr/delta; KEGG: dvl:Dvul_2769 phage transcriptional activator, Ogr/delta; transcriptional activator Ogr/delta complement(285407..285649) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283891 YP_002478831.1 CDS Ddes_0238 NC_011883.1 285696 286730 R TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; KEGG: dvl:Dvul_2768 PBSX family phage portal protein; phage portal protein, PBSX family complement(285696..286730) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283892 YP_002478832.1 CDS Ddes_0239 NC_011883.1 286741 288588 R PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: dvl:Dvul_1472 hypothetical protein; hypothetical protein complement(286741..288588) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283893 YP_002478833.1 CDS Ddes_0240 NC_011883.1 288701 289531 D PFAM: capsid scaffolding; KEGG: dvl:Dvul_1471 phage capsid scaffolding; capsid scaffolding 288701..289531 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283894 YP_002478834.1 CDS Ddes_0241 NC_011883.1 289565 290599 D TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2; KEGG: dvl:Dvul_2765 P2 family phage major capsid protein; phage major capsid protein, P2 family 289565..290599 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283895 YP_002478835.1 CDS Ddes_0242 NC_011883.1 290599 291348 D PFAM: small terminase subunit; KEGG: dvl:Dvul_2764 phage small terminase subunit; small terminase subunit 290599..291348 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283896 YP_002478836.1 CDS Ddes_0243 NC_011883.1 291453 291920 D PFAM: head completion protein; KEGG: dvl:Dvul_2763 prophage PSPPH06, putative head completion/stabilization protein; head completion protein 291453..291920 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283897 YP_002478837.1 CDS Ddes_0244 NC_011883.1 291920 292444 D KEGG: dvl:Dvul_2762 hypothetical protein; hypothetical protein 291920..292444 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283898 YP_002478838.1 CDS Ddes_0245 NC_011883.1 292441 293124 D KEGG: dvl:Dvul_2761 phage virion morphogenesis protein; phage virion morphogenesis protein 292441..293124 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283899 YP_002478839.1 CDS Ddes_0246 NC_011883.1 293136 294245 D KEGG: dvl:Dvul_2760 hypothetical protein; hypothetical protein 293136..294245 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283900 YP_002478840.1 CDS Ddes_0247 NC_011883.1 294255 294725 D KEGG: dvl:Dvul_2759 prophage PSPPH06, putative tail tube protein; prophage PSPPH06 tail tube protein 294255..294725 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283901 YP_002478841.1 CDS Ddes_0248 NC_011883.1 294737 295120 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rsh:Rsph17029_1851 peptidase M15A; peptidase M15A 294737..295120 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283902 YP_002478842.1 CDS Ddes_0249 NC_011883.1 295402 295674 D KEGG: asa:ASA_1577 phage protein; phage protein 295402..295674 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283903 YP_002478843.1 CDS Ddes_0250 NC_011883.1 295674 296006 D hypothetical protein 295674..296006 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283904 YP_002478844.1 CDS Ddes_0251 NC_011883.1 296009 296269 D KEGG: asa:ASA_3839 phage protein; phage protein 296009..296269 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283905 YP_002478845.1 CDS Ddes_0252 NC_011883.1 296302 296454 D KEGG: dvl:Dvul_2753 hypothetical protein; hypothetical protein 296302..296454 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283906 YP_002478846.1 CDS Ddes_0253 NC_011883.1 296460 298313 D TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: dvl:Dvul_1457 TP901 family phage tail tape measure protein; phage tail tape measure protein, TP901 family 296460..298313 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283907 YP_002478847.1 CDS Ddes_0254 NC_011883.1 298313 298675 D KEGG: dvu:DVU1641 hypothetical protein; hypothetical protein 298313..298675 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283908 YP_002478848.1 CDS Ddes_0255 NC_011883.1 298675 299865 D KEGG: dvl:Dvul_1453 uncharacterized phage Mu protein GP47-like protein; phage Mu protein GP47-like protein 298675..299865 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283909 YP_002478849.1 CDS Ddes_0256 NC_011883.1 299862 300476 D KEGG: dvl:Dvul_1452 hypothetical protein; hypothetical protein 299862..300476 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283910 YP_002478850.1 CDS Ddes_0257 NC_011883.1 300473 302302 D KEGG: dvl:Dvul_1451 hypothetical protein; hypothetical protein 300473..302302 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283911 YP_002478851.1 CDS Ddes_0258 NC_011883.1 302589 303167 D KEGG: dvu:DVU2731 tail fiber assembly protein, putative; hypothetical protein 302589..303167 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283912 YP_002478852.1 CDS Ddes_0259 NC_011883.1 303177 303983 D hypothetical protein 303177..303983 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283913 YP_002478853.1 CDS Ddes_0260 NC_011883.1 303980 304954 D KEGG: dvl:Dvul_1449 hypothetical protein; hypothetical protein 303980..304954 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283914 YP_002478854.1 CDS Ddes_0261 NC_011883.1 304942 305478 D KEGG: dvl:Dvul_2745 nucleoid DNA-binding protein; nucleoid DNA-binding protein 304942..305478 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283915 YP_002478855.1 CDS Ddes_0262 NC_011883.1 305475 306176 D KEGG: dvl:Dvul_1447 hypothetical protein; hypothetical protein 305475..306176 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283916 YP_002478856.1 CDS Ddes_0263 NC_011883.1 306161 307243 D PFAM: Gp5 domain protein; KEGG: dvl:Dvul_2743 GP5 domain-containing protein; Gp5 domain-containing protein 306161..307243 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283917 YP_002478857.1 CDS Ddes_0264 NC_011883.1 307382 307558 R hypothetical protein complement(307382..307558) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283918 YP_002478858.1 CDS Ddes_0265 NC_011883.1 307666 307884 R hypothetical protein complement(307666..307884) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283919 YP_002478859.1 CDS Ddes_0266 NC_011883.1 308230 309276 D KEGG: sml:Smlt2077A hypothetical protein; hypothetical protein 308230..309276 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283920 YP_002478860.1 CDS Ddes_0267 NC_011883.1 310156 311919 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(310156..311919) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283922 YP_002478861.1 CDS Ddes_0268 NC_011883.1 312579 313205 D KEGG: ecv:APECO1_4218 putative phage integrase; putative phage integrase 312579..313205 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283924 YP_002478862.1 CDS Ddes_0269 NC_011883.1 313363 313686 D KEGG: xfn:XfasM23_2250 putative plasmid conjugal transfer protein; putative plasmid conjugal transfer protein 313363..313686 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283925 YP_002478863.1 CDS Ddes_0270 NC_011883.1 313965 314357 D TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: mca:MCA1618 DNA mismatch endonuclease, vsr; DNA mismatch endonuclease Vsr 313965..314357 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283926 YP_002478864.1 CDS Ddes_0271 NC_011883.1 314426 315358 D TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ecp:ECP_3766 putative type II 5-cytosoine methyltransferase; DNA-cytosine methyltransferase 314426..315358 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283927 YP_002478865.1 CDS Ddes_0272 NC_011883.1 315355 316281 D TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ecp:ECP_3766 putative type II 5-cytosoine methyltransferase; DNA-cytosine methyltransferase 315355..316281 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283928 YP_002478866.1 CDS Ddes_0273 NC_011883.1 316286 317536 D KEGG: ecp:ECP_3768 hypothetical protein; hypothetical protein 316286..317536 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283929 YP_002478867.1 CDS Ddes_0274 NC_011883.1 317570 318358 R PFAM: Integrase catalytic region; KEGG: dvl:Dvul_2602 integrase catalytic subunit; integrase catalytic subunit complement(317570..318358) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283930 YP_002478868.1 CDS Ddes_0275 NC_011883.1 318415 318681 R PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU2011 ISD1, transposase OrfA; transposase IS3/IS911 family protein complement(318415..318681) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283931 YP_002478869.1 CDS Ddes_0276 NC_011883.1 320093 329368 D TIGRFAM: outer membrane adhesin like proteiin; KEGG: sdn:Sden_0384 hypothetical protein; outer membrane adhesin-like protein 320093..329368 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283932 YP_002478870.1 CDS Ddes_0277 NC_011883.1 329737 330666 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dth:DICTH_1665 D-3-phosphoglycerate dehydrogenase; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(329737..330666) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283933 YP_002478871.1 CDS Ddes_0278 NC_011883.1 331171 331356 R hypothetical protein complement(331171..331356) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283934 YP_002478872.1 CDS Ddes_0279 NC_011883.1 331530 332441 D KEGG: dvu:DVU0662 serine O-acetyltransferase; Serine O-acetyltransferase 331530..332441 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283935 YP_002478873.1 CDS Ddes_0280 NC_011883.1 332434 332589 D hypothetical protein 332434..332589 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283936 YP_002478874.1 CDS Ddes_0281 NC_011883.1 333003 334313 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: dvl:Dvul_1118 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 333003..334313 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283937 YP_002478875.1 CDS Ddes_0282 NC_011883.1 334741 335361 D KEGG: dvl:Dvul_2260 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 334741..335361 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283938 YP_002478876.1 CDS Ddes_0283 NC_011883.1 335396 336934 D KEGG: lip:LI0751 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 335396..336934 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283939 YP_002478877.1 CDS Ddes_0284 NC_011883.1 337388 338524 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: dvu:DVU2655 D-alanyl-D-alanine carboxypeptidase family protein; serine-type D-Ala-D-Ala carboxypeptidase complement(337388..338524) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283940 YP_002478878.1 CDS Ddes_0285 NC_011883.1 338817 340970 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dvl:Dvul_1305 methyl-accepting chemotaxis sensory transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(338817..340970) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283941 YP_002478879.1 CDS Ddes_0286 NC_011883.1 341466 341987 R KEGG: lip:LI0207 transcriptional regulators; putative AsnC family transcriptional regulator complement(341466..341987) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283942 YP_002478880.1 CDS Ddes_0287 NC_011883.1 341987 343231 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2128 radical SAM domain-containing protein; radical SAM protein complement(341987..343231) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283943 YP_002478881.1 CDS Ddes_0288 NC_011883.1 343244 344230 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(343244..344230) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283944 YP_002478882.1 CDS Ddes_0289 NC_011883.1 344349 345533 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2126 radical SAM domain-containing protein; radical SAM protein complement(344349..345533) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283945 YP_002478883.1 CDS alaS NC_011883.1 345544 348222 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(345544..348222) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283946 YP_002478884.1 CDS recA NC_011883.1 348360 349439 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(348360..349439) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283947 YP_002478885.1 CDS Ddes_0292 NC_011883.1 349866 350996 D PFAM: thiamine biosynthesis protein; KEGG: dvu:DVU1091 hypothetical protein; thiamine biosynthesis protein 349866..350996 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283948 YP_002478886.1 CDS Ddes_0293 NC_011883.1 351112 351474 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dvl:Dvul_1083 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 351112..351474 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283949 YP_002478887.1 CDS Ddes_0294 NC_011883.1 351846 353579 D PFAM: protein of unknown function DUF814; KEGG: dvu:DVU2149 hypothetical protein; hypothetical protein 351846..353579 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283950 YP_002478888.1 CDS Ddes_0295 NC_011883.1 353981 355147 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN3859 benzoate membrane transport protein, MFS superfamily; benzoate transporter complement(353981..355147) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283951 YP_002478889.1 CDS Ddes_0296 NC_011883.1 355524 356735 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(355524..356735) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283952 YP_002478890.1 CDS Ddes_0297 NC_011883.1 357004 359112 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(357004..359112) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283953 YP_002478891.1 CDS Ddes_0298 NC_011883.1 359280 362816 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(359280..362816) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283954 YP_002478892.1 CDS Ddes_0299 NC_011883.1 363273 363386 D hypothetical protein 363273..363386 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283955 YP_002478893.1 CDS Ddes_0300 NC_011883.1 363705 365462 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LI0843 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 363705..365462 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283956 YP_002478894.1 CDS Ddes_0301 NC_011883.1 365738 367945 D PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 365738..367945 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283957 YP_002478895.1 CDS Ddes_0302 NC_011883.1 368280 368936 R KEGG: lpf:plpl0013 hypothetical protein; hypothetical protein complement(368280..368936) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283958 YP_002478896.1 CDS Ddes_0303 NC_011883.1 369381 370100 R KEGG: fal:FRAAL6470 hypothetical protein; hypothetical protein complement(369381..370100) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283959 YP_002478897.1 CDS Ddes_0304 NC_011883.1 370412 372658 D KEGG: dvu:DVU3389 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 370412..372658 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283960 YP_002478898.1 CDS Ddes_0305 NC_011883.1 372645 373793 D PFAM: protein of unknown function DUF182; KEGG: pth:PTH_0686 xanthine and CO dehydrogenases maturation factor; hypothetical protein 372645..373793 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283961 YP_002478899.1 CDS Ddes_0306 NC_011883.1 374054 374692 D hypothetical protein 374054..374692 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283962 YP_002478900.1 CDS Ddes_0307 NC_011883.1 374918 376033 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: lip:LI0993 multidrug efflux membrane permease; RND family efflux transporter MFP subunit 374918..376033 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283963 YP_002478901.1 CDS Ddes_0308 NC_011883.1 376040 379243 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dvl:Dvul_2900 hydrophobe/amphiphile efflux-1 (HAE1) family protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 376040..379243 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283964 YP_002478902.1 CDS Ddes_0309 NC_011883.1 379240 380835 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: lip:LI0995 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 379240..380835 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283965 YP_002478903.1 CDS Ddes_0310 NC_011883.1 381117 381764 D hypothetical protein 381117..381764 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283966 YP_002478904.1 CDS Ddes_0311 NC_011883.1 382111 383286 D KEGG: dvl:Dvul_0013 hypothetical protein; hypothetical protein 382111..383286 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283967 YP_002478905.1 CDS Ddes_0312 NC_011883.1 383301 385025 D PFAM: glycosyl transferase family 9; KEGG: dvl:Dvul_2523 glycosyl transferase family protein; glycosyl transferase family protein 383301..385025 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283968 YP_002478906.1 CDS Ddes_0313 NC_011883.1 385105 385710 D KEGG: dvl:Dvul_2524 hypothetical protein; hypothetical protein 385105..385710 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283969 YP_002478907.1 CDS Ddes_0314 NC_011883.1 385727 386050 D KEGG: lip:LI1016 hypothetical protein; hypothetical protein 385727..386050 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283970 YP_002478908.1 CDS Ddes_0315 NC_011883.1 386669 387373 D PFAM: SAICAR synthetase; KEGG: emi:Emin_0220 phosphoribosylaminoimidazolesuccinocarboxamide synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 386669..387373 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283971 YP_002478909.1 CDS Ddes_0316 NC_011883.1 387637 388791 R KEGG: cmi:CMM_0897 hypothetical protein; hypothetical protein complement(387637..388791) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283972 YP_002478910.1 CDS Ddes_0317 NC_011883.1 388975 389133 R hypothetical protein complement(388975..389133) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283973 YP_002478911.1 CDS Ddes_0318 NC_011883.1 390349 391884 D PFAM: Chloride channel core; KEGG: cpe:CPE1408 hypothetical protein; chloride channel protein 390349..391884 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283975 YP_002478912.1 CDS Ddes_0319 NC_011883.1 392001 393266 D KEGG: dvl:Dvul_0136 phenylacetate-coenzyme A ligase, putative; phenylacetate-coenzyme A ligase 392001..393266 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283976 YP_002478913.1 CDS Ddes_0320 NC_011883.1 393689 394543 D KEGG: glo:Glov_1444 protein of unknown function DUF169; hypothetical protein 393689..394543 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283977 YP_002478914.1 CDS Ddes_0321 NC_011883.1 394817 395242 R KEGG: dvu:DVU3225 hypothetical protein; hypothetical protein complement(394817..395242) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283978 YP_002478915.1 CDS Ddes_0322 NC_011883.1 395239 395568 R KEGG: dvl:Dvul_0162 hypothetical protein; hypothetical protein complement(395239..395568) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283979 YP_002478916.1 CDS Ddes_0323 NC_011883.1 395756 396421 R PFAM: flagellar basal body-associated protein FliL; KEGG: dvu:DVU3227 flagellar basal body-associated protein, putative; flagellar basal body-associated protein FliL complement(395756..396421) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283980 YP_002478917.1 CDS Ddes_0324 NC_011883.1 396481 396861 R PFAM: response regulator receiver; KEGG: dvl:Dvul_0160 response regulator receiver protein; response regulator receiver protein complement(396481..396861) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283981 YP_002478918.1 CDS Ddes_0325 NC_011883.1 396936 397718 R KEGG: dvl:Dvul_0159 FliA/WhiG family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma-28 subunit FliA/WhiG complement(396936..397718) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283982 YP_002478919.1 CDS Ddes_0326 NC_011883.1 397881 398693 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvl:Dvul_0158 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase complement(397881..398693) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283983 YP_002478920.1 CDS Ddes_0327 NC_011883.1 398723 399766 R PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: dvl:Dvul_0157 flagellar biosynthesis protein FlhF, putative; GTP-binding signal recognition particle SRP54 G- domain-containing protein complement(398723..399766) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283984 YP_002478921.1 CDS Ddes_0329 NC_011883.1 400786 400980 D SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 400786..400980 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283986 YP_002478922.1 CDS Ddes_0330 NC_011883.1 401333 401599 D PFAM: helix-turn-helix domain protein; KEGG: hau:Haur_2753 XRE family transcriptional regulator; XRE family transcriptional regulator 401333..401599 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283987 YP_002478923.1 CDS flhA NC_011883.1 401682 403781 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(401682..403781) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283988 YP_002478924.1 CDS flhB NC_011883.1 403833 404912 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(403833..404912) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283989 YP_002478925.1 CDS Ddes_0333 NC_011883.1 405372 406598 D PFAM: major facilitator superfamily MFS_1; KEGG: dol:Dole_2623 major facilitator transporter; major facilitator superfamily protein 405372..406598 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283990 YP_002478926.1 CDS Ddes_0334 NC_011883.1 406765 407643 R PFAM: Prephenate dehydrogenase; KEGG: dvl:Dvul_2473 prephenate dehydrogenase; prephenate dehydrogenase complement(406765..407643) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283991 YP_002478927.1 CDS Ddes_0335 NC_011883.1 407640 409094 R KEGG: dvu:DVU0463 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase complement(407640..409094) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283992 YP_002478928.1 CDS Ddes_0336 NC_011883.1 409091 410350 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dvl:Dvul_2475 chorismate mutase; chorismate mutase complement(409091..410350) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283993 YP_002478929.1 CDS Ddes_0337 NC_011883.1 410352 411335 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase complement(410352..411335) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283994 YP_002478930.1 CDS Ddes_0338 NC_011883.1 411340 412137 R catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase complement(411340..412137) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283995 YP_002478931.1 CDS Ddes_0339 NC_011883.1 413018 414019 D catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 413018..414019 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283996 YP_002478932.1 CDS Ddes_0340 NC_011883.1 414091 415494 D PFAM: Na+/H+ antiporter NhaC; KEGG: dvl:Dvul_0605 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 414091..415494 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283997 YP_002478933.1 CDS Ddes_0341 NC_011883.1 415791 416444 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dps:DP1500 transcription regulator; GntR family transcriptional regulator 415791..416444 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283998 YP_002478934.1 CDS Ddes_0342 NC_011883.1 416741 417784 R PFAM: phosphoesterase RecJ domain protein; KEGG: lip:LI0703 exopolyphosphatase-like protein; phosphoesterase RecJ domain-containing protein complement(416741..417784) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283999 YP_002478935.1 CDS Ddes_0343 NC_011883.1 417862 418638 R KEGG: dvl:Dvul_2481 hypothetical protein; hypothetical protein complement(417862..418638) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284000 YP_002478936.1 CDS Ddes_0344 NC_011883.1 418658 418843 D hypothetical protein 418658..418843 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284001 YP_002478937.1 CDS Ddes_0345 NC_011883.1 418840 421752 R PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: dvl:Dvul_2044 peptidase M16C associated domain-containing protein; peptidase M16C associated domain-containing protein complement(418840..421752) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284002 YP_002478938.1 CDS rpsB NC_011883.1 422063 422839 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 422063..422839 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284003 YP_002478939.1 CDS tsf NC_011883.1 422978 423838 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 422978..423838 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284004 YP_002478940.1 CDS Ddes_0348 NC_011883.1 424121 425704 D PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: rru:Rru_A2870 integral membrane protein TerC; integral membrane protein TerC 424121..425704 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284005 YP_002478941.1 CDS Ddes_0349 NC_011883.1 426051 427808 R PFAM: chemotaxis sensory transducer; KEGG: dvl:Dvul_0942 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(426051..427808) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284006 YP_002478942.1 CDS Ddes_0350 NC_011883.1 428010 429227 R PFAM: Phosphoglycerate mutase; 6-phosphofructo-2-kinase; KEGG: lip:LI0094 fructose-2,6-bisphosphatase; phosphoglycerate mutase complement(428010..429227) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284007 YP_002478943.1 CDS Ddes_0351 NC_011883.1 429305 429997 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: csa:Csal_0199 aspartate racemase; aspartate racemase 429305..429997 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284008 YP_002478944.1 CDS Ddes_0352 NC_011883.1 430796 431992 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(430796..431992) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284009 YP_002478945.1 CDS Ddes_0353 NC_011883.1 432168 432416 R hypothetical protein complement(432168..432416) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284010 YP_002478946.1 CDS Ddes_0354 NC_011883.1 432931 433836 R hypothetical protein complement(432931..433836) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284011 YP_002478947.1 CDS Ddes_0355 NC_011883.1 434280 434558 R hypothetical protein complement(434280..434558) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284012 YP_002478948.1 CDS Ddes_0356 NC_011883.1 434639 435370 R KEGG: dvl:Dvul_2832 hypothetical protein; hypothetical protein complement(434639..435370) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284013 YP_002478949.1 CDS Ddes_0357 NC_011883.1 435373 436635 R PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_2833 hypothetical protein; hypothetical protein complement(435373..436635) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284014 YP_002478950.1 CDS Ddes_0358 NC_011883.1 437016 437792 R PFAM: protein of unknown function UPF0153; KEGG: dvl:Dvul_2824 hypothetical protein; hypothetical protein complement(437016..437792) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284015 YP_002478951.1 CDS Ddes_0359 NC_011883.1 437994 438287 D hypothetical protein 437994..438287 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284016 YP_002478952.1 CDS hisG NC_011883.1 438295 439188 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(438295..439188) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284017 YP_002478953.1 CDS hisI NC_011883.1 439200 439613 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(439200..439613) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284018 YP_002478954.1 CDS Ddes_0362 NC_011883.1 439975 441663 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dvl:Dvul_0291 DEAD/DEAH box helicase domain-containing protein; DEAD/DEAH box helicase 439975..441663 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284019 YP_002478955.1 CDS Ddes_0363 NC_011883.1 441678 442193 D KEGG: dvu:DVU3089 hypothetical protein; hypothetical protein 441678..442193 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284020 YP_002478956.1 CDS Ddes_0364 NC_011883.1 442355 443296 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: dvl:Dvul_2486 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 442355..443296 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284021 YP_002478957.1 CDS Ddes_0365 NC_011883.1 443538 444029 R KEGG: dra:DR_0094 hypothetical protein; hypothetical protein complement(443538..444029) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284022 YP_002478958.1 CDS Ddes_0366 NC_011883.1 444194 445120 D TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: dvu:DVU2490 histidinol phosphatase, putative; histidinol phosphate phosphatase protein 444194..445120 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284023 YP_002478959.1 CDS Ddes_0368 NC_011883.1 446382 447761 D KEGG: sul:SYO3AOP1_0717 conserved hypothetical protein, putative cytochrome; hypothetical protein 446382..447761 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284025 YP_002478960.1 CDS Ddes_0369 NC_011883.1 447764 449371 D KEGG: glo:Glov_1763 hypothetical protein; hypothetical protein 447764..449371 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284026 YP_002478961.1 CDS Ddes_0370 NC_011883.1 449680 450441 R PFAM: protein of unknown function DUF165; KEGG: hne:HNE_0462 hypothetical protein; hypothetical protein complement(449680..450441) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284027 YP_002478962.1 CDS era NC_011883.1 450519 451442 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 450519..451442 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284028 YP_002478963.1 CDS Ddes_0372 NC_011883.1 451446 452159 D PFAM: alanine racemase domain protein; KEGG: dvl:Dvul_2910 alanine racemase domain-containing protein; alanine racemase domain-containing protein 451446..452159 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284029 YP_002478964.1 CDS Ddes_0373 NC_011883.1 452303 452941 D PFAM: flagellar basal body-associated protein FliL; KEGG: dvl:Dvul_2914 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 452303..452941 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284030 YP_002478965.1 CDS Ddes_0374 NC_011883.1 452955 453200 D hypothetical protein 452955..453200 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284031 YP_002478966.1 CDS Ddes_0375 NC_011883.1 453237 453809 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI0641 flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein FliN 453237..453809 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284032 YP_002478967.1 CDS Ddes_0376 NC_011883.1 453814 454467 D PFAM: flagellar biosynthesis protein FliO; KEGG: dvl:Dvul_2916 flagellar biosynthesis protein, FliO, putative; flagellar biosynthesis protein FliO 453814..454467 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284033 YP_002478968.1 CDS fliP NC_011883.1 454517 455194 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 454517..455194 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284034 YP_002478969.1 CDS Ddes_0378 NC_011883.1 455286 455555 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: dvl:Dvul_2918 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 455286..455555 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284035 YP_002478970.1 CDS Ddes_0379 NC_011883.1 455969 456775 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dvl:Dvul_2919 RNA methyltransferase; TrmH family RNA methyltransferase complement(455969..456775) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284036 YP_002478971.1 CDS Ddes_0380 NC_011883.1 456912 458579 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: dvl:Dvul_2920 lytic transglycosylase, catalytic; lytic transglycosylase 456912..458579 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284037 YP_002478972.1 CDS Ddes_0381 NC_011883.1 464480 465307 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvl:Dvul_1132 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase complement(464480..465307) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284044 YP_002478973.1 CDS Ddes_0382 NC_011883.1 465413 467308 R KEGG: dvl:Dvul_1133 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; carbon-monoxide dehydrogenase, catalytic subunit complement(465413..467308) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284045 YP_002478974.1 CDS Ddes_0383 NC_011883.1 467452 468129 R SMART: regulatory protein Crp; KEGG: chy:CHY_1835 carbon monoxide oxidation system transcription regulator CooA-1; putative Crp/Fnr family transcriptional regulator complement(467452..468129) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284046 YP_002478975.1 CDS Ddes_0384 NC_011883.1 468386 468634 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dvl:Dvul_1243 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF complement(468386..468634) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284047 YP_002478976.1 CDS ileS NC_011883.1 469073 471889 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 469073..471889 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284048 YP_002478977.1 CDS Ddes_0386 NC_011883.1 471894 472430 D KEGG: dvl:Dvul_1239 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 471894..472430 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284049 YP_002478978.1 CDS Ddes_0387 NC_011883.1 472427 472633 D KEGG: dvu:DVU1929 hypothetical protein; hypothetical protein 472427..472633 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284050 YP_002478979.1 CDS Ddes_0388 NC_011883.1 472648 473625 D KEGG: dvl:Dvul_1237 TPR repeat-containing protein; TIGRFAM: tol-pal system protein YbgF; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; tol-pal system protein YbgF 472648..473625 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284051 YP_002478980.1 CDS Ddes_0389 NC_011883.1 473714 474349 D KEGG: dvu:DVU1458 chemotaxis protein CheZ, putative; putative chemotaxis phosphatase, CheZ 473714..474349 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284052 YP_002478981.1 CDS Ddes_0390 NC_011883.1 474676 475500 D PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_1688 nitroreductase; nitroreductase 474676..475500 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284053 YP_002478982.1 CDS Ddes_0391 NC_011883.1 476288 477085 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: lip:LI0740 flagellar basal body rod protein; hypothetical protein 476288..477085 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284054 YP_002478983.1 CDS flgG NC_011883.1 477189 477974 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 477189..477974 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284055 YP_002478984.1 CDS Ddes_0393 NC_011883.1 477993 479243 D TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dvl:Dvul_2427 FlgA family protein; flagella basal body P-ring formation protein FlgA 477993..479243 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284056 YP_002478985.1 CDS flgH NC_011883.1 479292 480011 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 479292..480011 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284057 YP_002478986.1 CDS Ddes_0395 NC_011883.1 481291 481866 R KEGG: bcm:Bcenmc03_5566 integrase catalytic region; hypothetical protein complement(481291..481866) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284059 YP_002478987.1 CDS Ddes_0396 NC_011883.1 482458 483591 D KEGG: sus:Acid_6620 glycosyl transferase, group 1; glycosyltransferase-like protein 482458..483591 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284060 YP_002478988.1 CDS Ddes_0397 NC_011883.1 483707 484981 R PFAM: glycosyl transferase group 1; KEGG: bpy:Bphyt_4708 glycosyl transferase group 1; group 1 glycosyl transferase complement(483707..484981) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284061 YP_002478989.1 CDS Ddes_0398 NC_011883.1 485030 486088 R PFAM: glycosyl transferase family 2; KEGG: tel:tll0993 probable glycosly transferase; family 2 glycosyl transferase complement(485030..486088) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284062 YP_002478990.1 CDS Ddes_0399 NC_011883.1 486258 487178 R PFAM: glycosyl transferase family 2; KEGG: pca:Pcar_2592 glycosyltransferase domain protein; family 2 glycosyl transferase complement(486258..487178) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284063 YP_002478991.1 CDS Ddes_0400 NC_011883.1 487187 488014 R PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_3029 glycosyl transferase family protein; family 2 glycosyl transferase complement(487187..488014) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284064 YP_002478992.1 CDS Ddes_0402 NC_011883.1 488810 489838 R PFAM: glycosyl transferase family 2; KEGG: gur:Gura_1682 glycosyl transferase family protein; family 2 glycosyl transferase complement(488810..489838) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284066 YP_002478993.1 CDS Ddes_0403 NC_011883.1 489894 490652 R PFAM: Methyltransferase type 12; KEGG: hypothetical protein; type 12 methyltransferase complement(489894..490652) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284067 YP_002478994.1 CDS Ddes_0404 NC_011883.1 490710 491555 R KEGG: rpe:RPE_4247 glycosyl transferase, family 2; hypothetical protein complement(490710..491555) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284068 YP_002478995.1 CDS Ddes_0405 NC_011883.1 491975 493225 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvl:Dvul_2647 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(491975..493225) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284069 YP_002478996.1 CDS Ddes_0406 NC_011883.1 493386 495215 R KEGG: dvl:Dvul_2646 hypothetical protein; hypothetical protein complement(493386..495215) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284070 YP_002478997.1 CDS Ddes_0407 NC_011883.1 495200 495871 R PFAM: transferase hexapeptide repeat containing protein; KEGG: dvl:Dvul_2637 hexapaptide repeat-containing transferase; transferase hexapeptide repeat containing protein complement(495200..495871) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284071 YP_002478998.1 CDS Ddes_0408 NC_011883.1 496002 497828 R KEGG: mag:amb0137 hypothetical protein; hypothetical protein complement(496002..497828) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284072 YP_002478999.1 CDS Ddes_0409 NC_011883.1 498067 498759 R hypothetical protein complement(498067..498759) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284073 YP_002479000.1 CDS Ddes_0410 NC_011883.1 499219 501051 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpb:Cphamn1_0373 ABC transporter-related protein; ABC transporter-like protein complement(499219..501051) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284074 YP_002479001.1 CDS Ddes_0411 NC_011883.1 501045 501989 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: hypothetical protein; K02377 GDP-L-fucose synthase; NAD-dependent epimerase/dehydratase complement(501045..501989) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284075 YP_002479002.1 CDS Ddes_0412 NC_011883.1 501995 503143 R TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: dvu:DVU0448 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase complement(501995..503143) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284076 YP_002479003.1 CDS Ddes_0413 NC_011883.1 503254 504696 R KEGG: syf:Synpcc7942_1608 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(503254..504696) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284077 YP_002479004.1 CDS Ddes_0414 NC_011883.1 504834 506255 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: gbm:Gbem_1134 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphomannomutase complement(504834..506255) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284078 YP_002479005.1 CDS Ddes_0415 NC_011883.1 506470 507279 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: eba:ebA3750 putative transcriptional regulator; AraC family transcriptional regulator complement(506470..507279) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284079 YP_002479006.1 CDS Ddes_0416 NC_011883.1 507403 508599 D PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_1047 major facilitator transporter; major facilitator superfamily protein 507403..508599 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284080 YP_002479007.1 CDS Ddes_0417 NC_011883.1 508703 509131 R hypothetical protein complement(508703..509131) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284081 YP_002479008.1 CDS Ddes_0418 NC_011883.1 509175 509675 R hypothetical protein complement(509175..509675) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284082 YP_002479009.1 CDS Ddes_0419 NC_011883.1 509650 510195 R PFAM: 4-vinyl reductase 4VR; KEGG: mbn:Mboo_0934 4-vinyl reductase, 4VR; 4-vinyl reductase 4VR complement(509650..510195) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284083 YP_002479010.1 CDS Ddes_0420 NC_011883.1 511141 511491 D PFAM: CI repressor; KEGG: dvl:Dvul_2281 putative phage repressor; CI repressor 511141..511491 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284084 YP_002479011.1 CDS Ddes_0421 NC_011883.1 511632 513356 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD1476 putative signaling protein; diguanylate cyclase/phosphodiesterase complement(511632..513356) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284085 YP_002479012.1 CDS Ddes_0422 NC_011883.1 513876 514829 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: glo:Glov_2679 diguanylate cyclase; diguanylate cyclase 513876..514829 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284086 YP_002479013.1 CDS Ddes_0423 NC_011883.1 514902 516056 R KEGG: tex:Teth514_0779 pyridoxal phosphate-dependent acyltransferase, putative; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase complement(514902..516056) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284087 YP_002479014.1 CDS Ddes_0424 NC_011883.1 516053 516760 R catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase complement(516053..516760) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284088 YP_002479015.1 CDS Ddes_0425 NC_011883.1 516894 517532 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH759 ABC transporter ATP-binding protein; ABC transporter-like protein complement(516894..517532) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284089 YP_002479016.1 CDS Ddes_0426 NC_011883.1 517529 518305 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH758 ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein complement(517529..518305) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284090 YP_002479017.1 CDS Ddes_0427 NC_011883.1 518298 519311 R KEGG: eba:ebA2115 putative periplasmic component of ABC-type transport system; hypothetical protein complement(518298..519311) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284091 YP_002479018.1 CDS Ddes_0428 NC_011883.1 519308 520393 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_A1457 O-methyltransferase family protein; type 12 methyltransferase complement(519308..520393) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284092 YP_002479019.1 CDS Ddes_0429 NC_011883.1 520396 522459 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rru:Rru_A1458 TonB-dependent receptor; TonB-dependent receptor complement(520396..522459) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284093 YP_002479020.1 CDS Ddes_0430 NC_011883.1 522675 523613 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ana:alr2575 transcriptional regulator; AraC family transcriptional regulator 522675..523613 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284094 YP_002479021.1 CDS Ddes_0431 NC_011883.1 523664 523930 D PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU2011 ISD1, transposase OrfA; transposase IS3/IS911 family protein 523664..523930 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284095 YP_002479022.1 CDS Ddes_0432 NC_011883.1 523987 524775 D PFAM: Integrase catalytic region; KEGG: dvl:Dvul_2602 integrase catalytic subunit; integrase catalytic subunit 523987..524775 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284096 YP_002479023.1 CDS Ddes_0433 NC_011883.1 525082 525729 D PFAM: helix-turn-helix domain protein; KEGG: pde:Pden_0455 helix-turn-helix domain protein; XRE family transcriptional regulator 525082..525729 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284097 YP_002479024.1 CDS Ddes_0434 NC_011883.1 525615 527510 R PFAM: plasmid recombination protein; SMART: Toprim sub domain protein; KEGG: npu:Npun_R3345 plasmid recombination enzyme; plasmid recombination protein complement(525615..527510) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284098 YP_002479025.1 CDS Ddes_0435 NC_011883.1 527776 528615 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pha:PSHAa1599 Soj protein, ATPase involved in chromosome partitioning; Cobyrinic acid ac-diamide synthase 527776..528615 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284099 YP_002479026.1 CDS Ddes_0436 NC_011883.1 528605 529138 D KEGG: pha:PSHAa1598 hypothetical protein; hypothetical protein 528605..529138 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284100 YP_002479027.1 CDS Ddes_0437 NC_011883.1 529135 529830 D KEGG: pha:PSHAa1597 hypothetical protein; hypothetical protein 529135..529830 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284101 YP_002479028.1 CDS Ddes_0438 NC_011883.1 529887 530899 R KEGG: bvi:Bcep1808_0279 phage integrase family protein; hypothetical protein complement(join(529887..530798,530798..530899)) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284102 YP_002479029.1 CDS Ddes_0439 NC_011883.1 531322 532140 R SMART: Tetratricopeptide domain protein; KEGG: dvu:DVU1955 TPR domain-containing protein; Tetratricopeptide domain-containing protein complement(531322..532140) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284104 YP_002479030.1 CDS Ddes_0440 NC_011883.1 532134 532874 R KEGG: dvl:Dvul_1214 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; cytidyltransferase-like domain-containing protein complement(532134..532874) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284105 YP_002479031.1 CDS proA NC_011883.1 532874 534145 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(532874..534145) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284106 YP_002479032.1 CDS Ddes_0442 NC_011883.1 534330 535097 D KEGG: dvu:DVU1952 hypothetical protein; hypothetical protein 534330..535097 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284107 YP_002479033.1 CDS Ddes_0443 NC_011883.1 535226 537082 D TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvl:Dvul_1217 indolepyruvate ferredoxin oxidoreductase; indolepyruvate ferredoxin oxidoreductase subunit alpha 535226..537082 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284108 YP_002479034.1 CDS Ddes_0444 NC_011883.1 537093 537701 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dvl:Dvul_1218 indolepyruvate ferredoxin oxidoreductase; Indolepyruvate ferredoxin oxidoreductase 537093..537701 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284109 YP_002479035.1 CDS Ddes_0445 NC_011883.1 537852 539012 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(537852..539012) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284110 YP_002479036.1 CDS Ddes_0446 NC_011883.1 539390 540721 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvl:Dvul_0462 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(539390..540721) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284111 YP_002479037.1 CDS Ddes_0447 NC_011883.1 541150 542319 R PFAM: Polysulphide reductase NrfD; KEGG: dvl:Dvul_1779 polysulphide reductase, NrfD; polysulfide reductase NrfD complement(541150..542319) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284112 YP_002479038.1 CDS Ddes_0448 NC_011883.1 542332 543114 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1778 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(542332..543114) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284113 YP_002479039.1 CDS Ddes_0449 NC_011883.1 543114 543494 R KEGG: dvl:Dvul_1777 cytochrome c family protein; cytochrome c family protein complement(543114..543494) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284114 YP_002479040.1 CDS Ddes_0450 NC_011883.1 543495 545138 R KEGG: dvl:Dvul_1776 reductase, iron-sulfur binding subunit, putative; reductase, iron-sulfur binding subunit complement(543495..545138) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284115 YP_002479041.1 CDS Ddes_0451 NC_011883.1 545151 546170 R PFAM: Nitrate reductase gamma subunit; KEGG: dvl:Dvul_1775 nitrate reductase, gamma subunit; Nitrate reductase gamma subunit complement(545151..546170) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284116 YP_002479042.1 CDS Ddes_0452 NC_011883.1 546293 546820 R KEGG: dvl:Dvul_1774 hypothetical protein; hypothetical protein complement(546293..546820) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284117 YP_002479043.1 CDS Ddes_0453 NC_011883.1 547177 548190 R KEGG: dvl:Dvul_1773 hypothetical protein; hypothetical protein complement(547177..548190) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284118 YP_002479044.1 CDS Ddes_0454 NC_011883.1 548418 549689 R KEGG: dvl:Dvul_1771 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; sulfate adenylyltransferase complement(548418..549689) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284119 YP_002479045.1 CDS Ddes_0455 NC_011883.1 550814 551338 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dvl:Dvul_1019 single-strand binding protein; single-strand binding protein complement(550814..551338) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284120 YP_002479046.1 CDS Ddes_0456 NC_011883.1 551376 551714 R KEGG: dvl:Dvul_1018 hypothetical protein; hypothetical protein complement(551376..551714) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284121 YP_002479047.1 CDS Ddes_0457 NC_011883.1 551757 552407 R KEGG: dvu:DVU2224 hypothetical protein; hypothetical protein complement(551757..552407) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284122 YP_002479048.1 CDS Ddes_0458 NC_011883.1 552700 554958 R PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dvl:Dvul_1016 acetyl-CoA carboxylase; acetyl-CoA carboxylase complement(552700..554958) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284123 YP_002479049.1 CDS Ddes_0459 NC_011883.1 554965 555636 R PFAM: Protein of unknown function DUF1847; KEGG: pca:Pcar_3043 conserved uncharacterized metal-binding protein; hypothetical protein complement(554965..555636) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284124 YP_002479050.1 CDS Ddes_0460 NC_011883.1 555652 557106 R PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dvl:Dvul_1015 pyruvate carboxylase; pyruvate carboxylase complement(555652..557106) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284125 YP_002479051.1 CDS Ddes_0461 NC_011883.1 557374 558285 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 557374..558285 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284126 YP_002479052.1 CDS Ddes_0462 NC_011883.1 558343 560169 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_1010 GTP-binding protein TypA; GTP-binding protein TypA 558343..560169 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284127 YP_002479053.1 CDS Ddes_0463 NC_011883.1 560266 560772 R PFAM: GCN5-related N-acetyltransferase; KEGG: pau:PA14_45980 putative acetyltransferase; N-acetyltransferase GCN5 complement(560266..560772) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284128 YP_002479054.1 CDS Ddes_0464 NC_011883.1 561126 565778 R PFAM: protein of unknown function DUF490; KEGG: rru:Rru_A2098 hypothetical protein; hypothetical protein complement(561126..565778) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284129 YP_002479055.1 CDS Ddes_0465 NC_011883.1 565778 567886 R PFAM: surface antigen (D15); KEGG: dvu:DVU2102 OMP85 family outer membrane protein; surface antigen (D15) complement(565778..567886) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284130 YP_002479056.1 CDS Ddes_0466 NC_011883.1 568053 568400 D PFAM: Domain of unknown function DUF1791; KEGG: dvl:Dvul_2357 hypothetical protein; hypothetical protein 568053..568400 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284131 YP_002479057.1 CDS Ddes_0467 NC_011883.1 568689 569546 D PFAM: hydroxyethylthiazole kinase; KEGG: cac:CAC3096 hydroxyethylthiazole kinase; Hydroxyethylthiazole kinase 568689..569546 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284132 YP_002479058.1 CDS Ddes_0468 NC_011883.1 570157 574422 R KEGG: lip:LI0332 carbohydrate phosphorylase family protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen synthase; alpha-glucan phosphorylase complement(570157..574422) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284133 YP_002479059.1 CDS Ddes_0469 NC_011883.1 574470 575933 R PFAM: glycoside hydrolase family 57; KEGG: lip:LI0331 alpha-amylase; alpha-amylase complement(574470..575933) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284134 YP_002479060.1 CDS Ddes_0470 NC_011883.1 575933 577303 R PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00881 4-alpha-glucanotransferase; group 1 glycosyl transferase complement(575933..577303) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284135 YP_002479061.1 CDS Ddes_0471 NC_011883.1 577389 579551 R TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: lip:LI0329 Glyen debranching enzyme; glycogen debranching protein complement(577389..579551) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284136 YP_002479062.1 CDS Ddes_0472 NC_011883.1 580130 581251 D PFAM: Extracellular ligand-binding receptor; KEGG: dvl:Dvul_2254 extracellular ligand-binding receptor; extracellular ligand-binding receptor 580130..581251 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284137 YP_002479063.1 CDS Ddes_0473 NC_011883.1 581507 582412 D PFAM: inner-membrane translocator; KEGG: dvl:Dvul_2253 inner-membrane translocator; inner-membrane translocator 581507..582412 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284138 YP_002479064.1 CDS Ddes_0474 NC_011883.1 582409 583419 D PFAM: inner-membrane translocator; KEGG: dvl:Dvul_2252 inner-membrane translocator; inner-membrane translocator 582409..583419 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284139 YP_002479065.1 CDS Ddes_0475 NC_011883.1 583416 584186 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2251 ABC transporter related; ABC transporter-like protein 583416..584186 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284140 YP_002479066.1 CDS Ddes_0476 NC_011883.1 584190 584900 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2250 ABC transporter related; ABC transporter-like protein 584190..584900 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284141 YP_002479067.1 CDS Ddes_0477 NC_011883.1 585383 586459 R PFAM: dihydrodipicolinate reductase; KEGG: emi:Emin_0479 hypothetical protein; dihydrodipicolinate reductase complement(585383..586459) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284142 YP_002479068.1 CDS Ddes_0478 NC_011883.1 586690 587508 R PFAM: MltA-interacting MipA family protein; KEGG: esa:ESA_02172 hypothetical protein; MltA-interacting MipA family protein complement(586690..587508) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284143 YP_002479069.1 CDS Ddes_0479 NC_011883.1 587517 588686 R PFAM: phosphoglycerate kinase; KEGG: dvu:DVU2529 phosphoglycerate kinase; phosphoglycerate kinase complement(587517..588686) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284144 YP_002479070.1 CDS Ddes_0480 NC_011883.1 588921 590924 R TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: dvu:DVU2530 transketolase; transketolase complement(588921..590924) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284145 YP_002479071.1 CDS Ddes_0481 NC_011883.1 590935 591663 R PFAM: ribulose-phosphate 3-epimerase; KEGG: dvu:DVU2531 ribulose-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase complement(590935..591663) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284146 YP_002479072.1 CDS Ddes_0482 NC_011883.1 591830 592024 D hypothetical protein 591830..592024 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284147 YP_002479073.1 CDS Ddes_0483 NC_011883.1 592165 592590 R PFAM: regulatory protein MerR; KEGG: dvl:Dvul_0713 MerR family transcriptional regulator; MerR family transcriptional regulator complement(592165..592590) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284148 YP_002479074.1 CDS pheT NC_011883.1 592670 595075 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(592670..595075) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284149 YP_002479075.1 CDS Ddes_0485 NC_011883.1 595185 595631 R hypothetical protein complement(595185..595631) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284150 YP_002479076.1 CDS pheS NC_011883.1 595642 596679 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(595642..596679) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284151 YP_002479077.1 CDS rplT NC_011883.1 596882 597238 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(596882..597238) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284152 YP_002479078.1 CDS rpmI NC_011883.1 597533 597730 R PFAM: ribosomal protein L35; KEGG: dvl:Dvul_0709 50S ribosomal protein L35; 50S ribosomal protein L35 complement(597533..597730) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284153 YP_002479079.1 CDS infC NC_011883.1 597993 598523 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(597993..598523) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284154 YP_002479080.1 CDS Ddes_0490 NC_011883.1 598525 600468 R TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: dvl:Dvul_0707 threonyl-tRNA synthetase; threonyl-tRNA synthetase complement(598525..600468) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284155 YP_002479081.1 CDS Ddes_0491 NC_011883.1 601296 601760 D PFAM: MOSC domain containing protein; KEGG: cpy:Cphy_1481 molybdenum cofactor synthesis domain-containing protein; MOSC domain-containing protein 601296..601760 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284157 YP_002479082.1 CDS Ddes_0492 NC_011883.1 601819 602520 R PFAM: protein of unknown function DUF554; KEGG: sfv:SFV_3025 putative transport protein; hypothetical protein complement(601819..602520) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284158 YP_002479083.1 CDS Ddes_0493 NC_011883.1 603341 603607 D PFAM: RNP-1 like RNA-binding protein; KEGG: dvl:Dvul_0803 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 603341..603607 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284159 YP_002479084.1 CDS Ddes_0494 NC_011883.1 603623 604129 D hypothetical protein 603623..604129 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284160 YP_002479085.1 CDS Ddes_0496 NC_011883.1 604935 605360 R KEGG: dvl:Dvul_2814 hypothetical protein; hypothetical protein complement(604935..605360) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284163 YP_002479086.1 CDS Ddes_0497 NC_011883.1 605640 606110 D PFAM: phosphatidylglycerophosphatase A; KEGG: dvu:DVU0528 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 605640..606110 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284164 YP_002479087.1 CDS infA NC_011883.1 606211 606429 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(606211..606429) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284165 YP_002479088.1 CDS Ddes_0499 NC_011883.1 606772 607629 R PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dvl:Dvul_2948 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(606772..607629) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284166 YP_002479089.1 CDS Ddes_0500 NC_011883.1 607629 608120 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dvl:Dvul_2691 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C complement(607629..608120) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284167 YP_002479090.1 CDS Ddes_0501 NC_011883.1 608183 609355 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: dvu:DVU2975 hydrolase, putative; membrane-bound metal-dependent hydrolase complement(608183..609355) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284168 YP_002479091.1 CDS Ddes_0502 NC_011883.1 609359 609700 R hypothetical protein complement(609359..609700) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284169 YP_002479092.1 CDS Ddes_0503 NC_011883.1 610151 610798 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 610151..610798 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284170 YP_002479093.1 CDS Ddes_0504 NC_011883.1 610843 611604 D KEGG: dvl:Dvul_0392 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 610843..611604 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284171 YP_002479094.1 CDS Ddes_0505 NC_011883.1 611720 613267 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 611720..613267 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284172 YP_002479095.1 CDS Ddes_0506 NC_011883.1 613459 614721 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 613459..614721 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284173 YP_002479096.1 CDS leuD NC_011883.1 614856 615353 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 614856..615353 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284174 YP_002479097.1 CDS Ddes_0508 NC_011883.1 615395 615583 R hypothetical protein complement(615395..615583) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284175 YP_002479098.1 CDS Ddes_0509 NC_011883.1 615630 616703 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 615630..616703 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284176 YP_002479099.1 CDS Ddes_0510 NC_011883.1 616990 619287 R KEGG: cdf:CD0997 putative signaling protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(616990..619287) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284177 YP_002479100.1 CDS Ddes_0511 NC_011883.1 619494 620861 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 619494..620861 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284178 YP_002479101.1 CDS Ddes_0512 NC_011883.1 621131 622060 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bth:BT_3290 hypothetical protein; hypothetical protein complement(621131..622060) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284179 YP_002479102.1 CDS Ddes_0513 NC_011883.1 622449 623249 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: dvl:Dvul_2527 rare lipoprotein A; rare lipoprotein A complement(622449..623249) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284180 YP_002479103.1 CDS Ddes_0514 NC_011883.1 624141 625022 R PFAM: peptidase M22 glycoprotease; KEGG: dvl:Dvul_2118 peptidase M22, glycoprotease; peptidase M22 glycoprotease complement(624141..625022) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284181 YP_002479104.1 CDS Ddes_0515 NC_011883.1 625019 626209 R KEGG: dvl:Dvul_2117 putative membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease complement(625019..626209) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284182 YP_002479105.1 CDS Ddes_0516 NC_011883.1 626203 627534 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(626203..627534) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284183 YP_002479106.1 CDS Ddes_0517 NC_011883.1 627914 628732 R PFAM: phosphatidate cytidylyltransferase; KEGG: dvl:Dvul_2114 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(627914..628732) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284184 YP_002479107.1 CDS Ddes_0518 NC_011883.1 628722 629564 R KEGG: dvl:Dvul_2113 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(628722..629564) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284185 YP_002479108.1 CDS frr NC_011883.1 629710 630270 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(629710..630270) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284186 YP_002479109.1 CDS pyrH NC_011883.1 630507 631220 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(630507..631220) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284187 YP_002479110.1 CDS Ddes_0521 NC_011883.1 631362 631745 R KEGG: dvl:Dvul_2683 hypothetical protein; hypothetical protein complement(631362..631745) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284188 YP_002479111.1 CDS Ddes_0522 NC_011883.1 631745 632095 R PFAM: branched-chain amino acid transport; KEGG: dps:DP2464 hypothetical protein; branched-chain amino acid transport complement(631745..632095) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284189 YP_002479112.1 CDS Ddes_0523 NC_011883.1 632092 632838 R PFAM: AzlC family protein; KEGG: dvl:Dvul_2930 AzlC family protein; AzlC family protein complement(632092..632838) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284190 YP_002479113.1 CDS Ddes_0524 NC_011883.1 632910 633446 R PFAM: HPP family protein; KEGG: mgm:Mmc1_0464 HPP family protein+B94; HPP family protein complement(632910..633446) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284191 YP_002479114.1 CDS Ddes_0525 NC_011883.1 633642 634958 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1913 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(633642..634958) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284192 YP_002479115.1 CDS Ddes_0526 NC_011883.1 635110 635571 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: fno:Fnod_1620 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein complement(635110..635571) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284193 YP_002479116.1 CDS Ddes_0527 NC_011883.1 635552 636094 R KEGG: tde:TDE1177 flavodoxin family protein; flavodoxin family protein complement(635552..636094) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284194 YP_002479117.1 CDS Ddes_0528 NC_011883.1 636186 636920 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: glo:Glov_2803 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(636186..636920) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284195 YP_002479118.1 CDS Ddes_0529 NC_011883.1 637241 637987 R PFAM: flagellar protein FliS; KEGG: dvl:Dvul_2120 flagellar protein FliS; flagellar protein FliS complement(637241..637987) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284196 YP_002479119.1 CDS Ddes_0530 NC_011883.1 638041 641118 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: dvl:Dvul_2119 flagellar hook-associated 2 domain-containing protein; flagellar hook-associated 2 domain-containing protein complement(638041..641118) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284197 YP_002479120.1 CDS Ddes_0531 NC_011883.1 641693 642859 D PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_2296 hypothetical protein; major facilitator superfamily transporter 641693..642859 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284198 YP_002479121.1 CDS Ddes_0532 NC_011883.1 643249 644097 R PFAM: VacJ family lipoprotein; KEGG: dvl:Dvul_1820 VacJ family lipoprotein; VacJ family lipoprotein complement(643249..644097) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284199 YP_002479122.1 CDS Ddes_0533 NC_011883.1 644087 644731 R PFAM: toluene tolerance family protein; KEGG: dvl:Dvul_1819 toluene tolerance family protein; toluene tolerance family protein complement(644087..644731) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284200 YP_002479123.1 CDS Ddes_0534 NC_011883.1 644734 645186 R PFAM: Mammalian cell entry related domain protein; KEGG: dvl:Dvul_1818 hypothetical protein; mammalian cell entry domain-containing protein complement(644734..645186) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284201 YP_002479124.1 CDS Ddes_0535 NC_011883.1 645658 646473 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1817 ABC transporter related; ABC transporter-like protein complement(645658..646473) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284202 YP_002479125.1 CDS Ddes_0536 NC_011883.1 646886 647623 R PFAM: protein of unknown function DUF28; KEGG: dvu:DVU2259 hypothetical protein; hypothetical protein complement(646886..647623) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284203 YP_002479126.1 CDS Ddes_0537 NC_011883.1 647657 648328 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dvl:Dvul_0985 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(647657..648328) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284204 YP_002479127.1 CDS Ddes_0538 NC_011883.1 648471 649007 D PFAM: superoxide dismutase copper/zinc binding; KEGG: mag:amb2978 Cu/Zn superoxide dismutase; copper/zinc binding superoxide dismutase 648471..649007 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284205 YP_002479128.1 CDS Ddes_0539 NC_011883.1 649140 650906 D KEGG: dvl:Dvul_0984 hypothetical protein; hypothetical protein 649140..650906 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284206 YP_002479129.1 CDS Ddes_0540 NC_011883.1 651533 652624 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tbd:Tbd_1780 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 651533..652624 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284208 YP_002479130.1 CDS Ddes_0541 NC_011883.1 652621 653514 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pcr:Pcryo_0625 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 652621..653514 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284209 YP_002479131.1 CDS Ddes_0542 NC_011883.1 653505 654044 D KEGG: lip:LIC004 dTDP-6-deoxy-D-glucose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 653505..654044 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284210 YP_002479132.1 CDS Ddes_0543 NC_011883.1 654309 654752 R PFAM: protein of unknown function DUF302; KEGG: rde:RD1_1777 hypothetical protein; hypothetical protein complement(654309..654752) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284211 YP_002479133.1 CDS Ddes_0544 NC_011883.1 655422 656861 D KEGG: dvu:DVU3143 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 655422..656861 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284212 YP_002479134.1 CDS Ddes_0545 NC_011883.1 657089 658228 R PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dvl:Dvul_0706 2-hydroxyglutaryl-CoA dehydratase, D-component; 2-hydroxyglutaryl-CoA dehydratase subunit D complement(657089..658228) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284213 YP_002479135.1 CDS Ddes_0546 NC_011883.1 658274 659065 R TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: dvl:Dvul_0705 putative CoA-substrate-specific enzyme activase; CoA-substrate-specific enzyme activase complement(658274..659065) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284214 YP_002479136.1 CDS Ddes_0548 NC_011883.1 659852 662230 R KEGG: dvl:Dvul_1843 glycosyl transferase family protein; 4-amino-4-deoxy-L-arabinose transferase-like protein complement(659852..662230) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284216 YP_002479137.1 CDS Ddes_0549 NC_011883.1 662227 664437 R KEGG: dvl:Dvul_1839 hypothetical protein; hypothetical protein complement(662227..664437) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284217 YP_002479138.1 CDS mazG NC_011883.1 664527 665324 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(664527..665324) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284218 YP_002479139.1 CDS Ddes_0551 NC_011883.1 665499 665627 R hypothetical protein complement(665499..665627) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284219 YP_002479140.1 CDS Ddes_0552 NC_011883.1 665647 666135 R PFAM: Colicin V production protein; KEGG: dvl:Dvul_1872 colicin V production protein; colicin V production protein complement(665647..666135) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284220 YP_002479141.1 CDS Ddes_0553 NC_011883.1 666425 667093 D KEGG: dvu:DVU0579 molybdopterin-guanine dinucleotide biosynthesis protein A, putative; molybdopterin-guanine dinucleotide biosynthesis protein A 666425..667093 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284221 YP_002479142.1 CDS Ddes_0554 NC_011883.1 667310 668989 D PFAM: molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E region; KEGG: dvl:Dvul_2793 molybdopterin binding domain-containing protein; formylmethanofuran dehydrogenase subunit E 667310..668989 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284222 YP_002479143.1 CDS Ddes_0555 NC_011883.1 669447 672485 D KEGG: dvu:DVU2812 formate dehydrogenase, alpha subunit, selenocysteine-containing; Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha 669447..672485 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284223 YP_002479144.1 CDS Ddes_0556 NC_011883.1 672535 673194 D KEGG: dvl:Dvul_0502 formate dehydrogenase, beta subunit, putative; formate dehydrogenase subunit beta 672535..673194 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284224 YP_002479145.1 CDS Ddes_0557 NC_011883.1 673505 674482 D PFAM: formate dehydrogenase accessory protein; KEGG: dvl:Dvul_0503 formate dehydrogenase formation protein FdhE, putative; formate dehydrogenase accessory protein 673505..674482 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284225 YP_002479146.1 CDS Ddes_0558 NC_011883.1 674928 675371 D PFAM: cytochrome c class III; KEGG: dvl:Dvul_0504 cytochrome c, class III; cytochrome c class III 674928..675371 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284226 YP_002479147.1 CDS Ddes_0559 NC_011883.1 676786 678090 R KEGG: dvl:Dvul_1519 phenylacetate--CoA ligase; phenylacetate--CoA ligase complement(676786..678090) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284231 YP_002479148.1 CDS Ddes_0560 NC_011883.1 678422 678853 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: dvl:Dvul_1517 iojap-like protein; iojap family protein 678422..678853 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284232 YP_002479149.1 CDS Ddes_0561 NC_011883.1 678858 680423 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 678858..680423 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284233 YP_002479150.1 CDS Ddes_0562 NC_011883.1 680416 680658 D KEGG: dvl:Dvul_1515 hypothetical protein; hypothetical protein 680416..680658 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284234 YP_002479151.1 CDS Ddes_0563 NC_011883.1 680929 682461 D KEGG: dvl:Dvul_2176 hypothetical protein; hypothetical protein 680929..682461 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284235 YP_002479152.1 CDS Ddes_0564 NC_011883.1 683055 683975 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_2888 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease complement(683055..683975) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284236 YP_002479153.1 CDS Ddes_0565 NC_011883.1 684002 684892 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_2887 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease complement(684002..684892) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284237 YP_002479154.1 CDS Ddes_0566 NC_011883.1 685007 685855 R TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sat:SYN_00056 ABC-type phosphate transport system, periplasmic component; phosphate binding protein complement(685007..685855) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284238 YP_002479155.1 CDS Ddes_0567 NC_011883.1 686249 686926 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dvl:Dvul_1911 two component transcriptional regulator; winged helix family two component transcriptional regulator 686249..686926 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284239 YP_002479156.1 CDS Ddes_0568 NC_011883.1 687006 689015 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: scl:sce3423 sensory box histidine kinase PhoR; histidine kinase 687006..689015 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284240 YP_002479157.1 CDS Ddes_0569 NC_011883.1 689018 689773 D KEGG: dol:Dole_1928 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 689018..689773 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284241 YP_002479158.1 CDS Ddes_0570 NC_011883.1 689966 690775 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: scl:sce2942 phosphate transport system regulatory protein PhoU; phosphate uptake regulator PhoU 689966..690775 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284242 YP_002479159.1 CDS Ddes_0571 NC_011883.1 690817 691449 D PFAM: protein of unknown function UPF0153; KEGG: tye:THEYE_A0258 hypothetical protein; hypothetical protein 690817..691449 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284243 YP_002479160.1 CDS Ddes_0572 NC_011883.1 691772 692581 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00367 sulfate transport ATP-binding protein; ABC transporter-like protein complement(691772..692581) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284244 YP_002479161.1 CDS Ddes_0573 NC_011883.1 692560 693393 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sat:SYN_00366 sulfate transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(692560..693393) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284245 YP_002479162.1 CDS Ddes_0574 NC_011883.1 693551 694645 R KEGG: sat:SYN_00365 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein complement(693551..694645) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284246 YP_002479163.1 CDS Ddes_0575 NC_011883.1 694769 695659 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; radical SAM protein complement(694769..695659) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284247 YP_002479164.1 CDS Ddes_0576 NC_011883.1 695656 696432 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1960 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(695656..696432) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284248 YP_002479165.1 CDS Ddes_0577 NC_011883.1 696422 697276 R KEGG: sfu:Sfum_1959 putative molybdenum ABC transporter, solute-binding protein; putative molybdenum ABC transporter solute-binding protein complement(696422..697276) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284249 YP_002479166.1 CDS Ddes_0578 NC_011883.1 698104 700710 R KEGG: dvl:Dvul_1290 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(698104..700710) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284250 YP_002479167.1 CDS Ddes_0579 NC_011883.1 701090 701404 R KEGG: lip:LI0125 hypothetical protein; hypothetical protein complement(701090..701404) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284251 YP_002479168.1 CDS Ddes_0580 NC_011883.1 701425 702399 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dvl:Dvul_1288 chaperone DnaJ domain-containing protein; chaperone DnaJ domain-containing protein complement(701425..702399) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284252 YP_002479169.1 CDS uvrC NC_011883.1 702956 705019 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(702956..705019) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284253 YP_002479170.1 CDS Ddes_0582 NC_011883.1 705738 707255 R KEGG: dvu:DVU0799 hypothetical protein; hypothetical protein complement(705738..707255) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284254 YP_002479171.1 CDS Ddes_0583 NC_011883.1 707768 708979 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(707768..708979) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284255 YP_002479172.1 CDS Ddes_0584 NC_011883.1 709285 710088 D PFAM: thymidylate synthase complementing protein ThyX; KEGG: gbm:Gbem_3711 thymidylate synthase, flavin-dependent; thymidylate synthase complementing protein ThyX 709285..710088 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284256 YP_002479173.1 CDS Ddes_0586 NC_011883.1 710781 712160 R PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes; O-antigen polymerase complement(710781..712160) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284258 YP_002479174.1 CDS Ddes_0587 NC_011883.1 712317 713039 D PFAM: protein of unknown function DUF88; KEGG: dvl:Dvul_1187 hypothetical protein; hypothetical protein 712317..713039 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284259 YP_002479175.1 CDS Ddes_0588 NC_011883.1 713268 714011 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: lip:LI0129 amino acid ABC transporter, periplasmic amino acid-binding protein; family 3 extracellular solute-binding protein 713268..714011 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284260 YP_002479176.1 CDS Ddes_0589 NC_011883.1 714067 714810 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: lip:LI0129 amino acid ABC transporter, periplasmic amino acid-binding protein; family 3 extracellular solute-binding protein 714067..714810 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284261 YP_002479177.1 CDS Ddes_0590 NC_011883.1 714892 715692 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_1825 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 714892..715692 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284262 YP_002479178.1 CDS Ddes_0591 NC_011883.1 715679 716446 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1826 ABC transporter related; ABC transporter-like protein 715679..716446 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284263 YP_002479179.1 CDS Ddes_0592 NC_011883.1 716595 717872 D PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dvl:Dvul_2170 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 716595..717872 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284264 YP_002479180.1 CDS Ddes_0593 NC_011883.1 718060 719067 R KEGG: dvl:Dvul_0631 hypothetical protein; hypothetical protein complement(718060..719067) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284265 YP_002479181.1 CDS Ddes_0594 NC_011883.1 719151 720371 R PFAM: sodium/calcium exchanger membrane region; KEGG: dvl:Dvul_0633 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane protein complement(719151..720371) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284266 YP_002479182.1 CDS Ddes_0595 NC_011883.1 720681 721967 D KEGG: dvl:Dvul_2123 hypothetical protein; hypothetical protein 720681..721967 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284267 YP_002479183.1 CDS Ddes_0596 NC_011883.1 722279 723064 D KEGG: dvl:Dvul_2125 putative lipoprotein; hypothetical protein 722279..723064 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284268 YP_002479184.1 CDS Ddes_0597 NC_011883.1 723031 723783 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvl:Dvul_0906 tRNA guanosine-2'-O-methyltransferase; tRNA guanosine-2'-O-methyltransferase 723031..723783 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284269 YP_002479185.1 CDS Ddes_0598 NC_011883.1 723926 724516 R PFAM: cyclase family protein; KEGG: cbe:Cbei_0277 cyclase family protein; cyclase family protein complement(723926..724516) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284270 YP_002479186.1 CDS Ddes_0599 NC_011883.1 724629 725153 D PFAM: regulatory protein MarR; KEGG: mma:MM_1903 MarR family transcriptional regulator; MarR family transcriptional regulator 724629..725153 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284271 YP_002479187.1 CDS Ddes_0600 NC_011883.1 725224 725859 R KEGG: dvl:Dvul_1183 hypothetical protein; hypothetical protein complement(725224..725859) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284272 YP_002479188.1 CDS Ddes_0601 NC_011883.1 726076 729036 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dvl:Dvul_1185 excinuclease ABC, A subunit; excinuclease ABC subunit A 726076..729036 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284273 YP_002479189.1 CDS Ddes_0602 NC_011883.1 729384 729950 R TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cpf:CPF_0784 alkyl hydroperoxide reductase, C subunit; peroxiredoxin complement(729384..729950) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284274 YP_002479190.1 CDS Ddes_0603 NC_011883.1 730348 730812 D PFAM: ferric-uptake regulator; KEGG: scl:sce0007 ferric uptake regulation protein; Fur family ferric uptake regulator 730348..730812 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284275 YP_002479191.1 CDS Ddes_0604 NC_011883.1 731165 731410 D hypothetical protein 731165..731410 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284276 YP_002479192.1 CDS Ddes_0605 NC_011883.1 731851 732285 R PFAM: thioesterase superfamily protein; KEGG: dvl:Dvul_2098 thioesterase superfamily protein; thioesterase superfamily protein complement(731851..732285) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284277 YP_002479193.1 CDS Ddes_0606 NC_011883.1 732376 733452 D PFAM: MltA domain protein; 3D domain protein; KEGG: dvl:Dvul_2097 MltA domain-containing protein; MltA domain-containing protein 732376..733452 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284278 YP_002479194.1 CDS Ddes_0607 NC_011883.1 733571 734038 R TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: dvl:Dvul_0895 Fis family transcriptional regulator; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ complement(733571..734038) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284279 YP_002479195.1 CDS Ddes_0608 NC_011883.1 734334 734879 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: dvl:Dvul_0893 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(734334..734879) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284280 YP_002479196.1 CDS Ddes_0609 NC_011883.1 735085 737511 R PFAM: cell wall hydrolase/autolysin; KEGG: dvu:DVU2371 N-acetylmuramoyl-L-alanine amidase, putative; N-acetylmuramoyl-L-alanine amidase complement(735085..737511) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284281 YP_002479197.1 CDS Ddes_0610 NC_011883.1 737717 738049 R PFAM: Protein of unknown function CGGC region; KEGG: cbf:CLI_0908 CGGC domain-containing protein; hypothetical protein complement(737717..738049) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284282 YP_002479198.1 CDS Ddes_0611 NC_011883.1 738278 741040 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dvl:Dvul_0891 surface antigen (D15); outer membrane protein assembly complex, YaeT protein complement(738278..741040) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284283 YP_002479199.1 CDS Ddes_0612 NC_011883.1 741021 741707 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_0890 ABC transporter related; ABC transporter-like protein complement(741021..741707) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284284 YP_002479200.1 CDS Ddes_0613 NC_011883.1 741710 742945 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dvl:Dvul_0889 LolC/E family lipoprotein releasing system, transmembrane protein; lipoprotein releasing system transmembrane protein LolC/E family complement(741710..742945) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284285 YP_002479201.1 CDS Ddes_0614 NC_011883.1 743742 744314 D KEGG: hsm:HSM_1276 NapC/NirT cytochrome c domain-containing protein; NapC/NirT cytochrome c domain-containing protein 743742..744314 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284286 YP_002479202.1 CDS Ddes_0615 NC_011883.1 744311 744757 D KEGG: ade:Adeh_0909 hypothetical protein; hypothetical protein 744311..744757 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284287 YP_002479203.1 CDS Ddes_0616 NC_011883.1 744896 747163 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ade:Adeh_0908 periplasmic nitrate reductase subunit NapA apoprotein; molybdopterin oxidoreductase 744896..747163 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284288 YP_002479204.1 CDS Ddes_0617 NC_011883.1 747172 747501 D hypothetical protein 747172..747501 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284289 YP_002479205.1 CDS Ddes_0618 NC_011883.1 747498 748022 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY4077 hypothetical protein; 4Fe-4S ferredoxin 747498..748022 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284290 YP_002479206.1 CDS Ddes_0619 NC_011883.1 748019 748918 D KEGG: shl:Shal_0713 quinol dehydrogenase membrane component; quinol dehydrogenase membrane component 748019..748918 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284291 YP_002479207.1 CDS Ddes_0620 NC_011883.1 749116 750627 R TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dvl:Dvul_0888 lysyl-tRNA synthetase; lysyl-tRNA synthetase complement(749116..750627) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284292 YP_002479208.1 CDS Ddes_0621 NC_011883.1 750911 751474 D PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_2949 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 750911..751474 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284293 YP_002479209.1 CDS Ddes_0622 NC_011883.1 751627 753012 D PFAM: protein of unknown function DUF711; KEGG: lip:LI0872 hypothetical protein; hypothetical protein 751627..753012 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284294 YP_002479210.1 CDS Ddes_0623 NC_011883.1 753237 753563 D hypothetical protein 753237..753563 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284295 YP_002479211.1 CDS Ddes_0624 NC_011883.1 753560 754072 R hypothetical protein complement(753560..754072) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284296 YP_002479212.1 CDS Ddes_0625 NC_011883.1 754138 754548 D PFAM: protein of unknown function DUF1090; KEGG: ypb:YPTS_3669 hypothetical protein; hypothetical protein 754138..754548 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284297 YP_002479213.1 CDS Ddes_0626 NC_011883.1 754650 755435 R PFAM: protein of unknown function DUF81; KEGG: ppf:Pput_0520 hypothetical protein; hypothetical protein complement(754650..755435) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284298 YP_002479214.1 CDS Ddes_0627 NC_011883.1 755437 756027 R PFAM: protein of unknown function DUF486; KEGG: dvl:Dvul_0419 hypothetical protein; hypothetical protein complement(755437..756027) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284299 YP_002479215.1 CDS Ddes_0628 NC_011883.1 756204 757484 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(756204..757484) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284300 YP_002479216.1 CDS Ddes_0629 NC_011883.1 757912 759285 D PFAM: cation transporter; KEGG: dvu:DVU0413 TrkH family potassium uptake protein; H(+)-transporting two-sector ATPase 757912..759285 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284301 YP_002479217.1 CDS Ddes_0630 NC_011883.1 759543 760202 D PFAM: TrkA-N domain protein; TrkA-C domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dvl:Dvul_2522 TrkA domain-containing protein; TrkA-N domain-containing protein 759543..760202 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284302 YP_002479218.1 CDS Ddes_0631 NC_011883.1 760375 761409 R PFAM: protein of unknown function DUF45; KEGG: cli:Clim_1657 protein of unknown function DUF45; hypothetical protein complement(760375..761409) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284303 YP_002479219.1 CDS Ddes_0632 NC_011883.1 761658 762149 D KEGG: LOC686844; hypothetical protein LOC686844; hypothetical protein 761658..762149 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284304 YP_002479220.1 CDS Ddes_0633 NC_011883.1 762281 762856 D PFAM: Rubrerythrin; KEGG: lip:LI0696 rubrerythrin; rubrerythrin 762281..762856 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284305 YP_002479221.1 CDS Ddes_0634 NC_011883.1 763837 765240 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_1978 TolC family type I secretion outer membrane protein; TolC family type I secretion outer membrane protein 763837..765240 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284306 YP_002479222.1 CDS Ddes_0635 NC_011883.1 765507 768269 D KEGG: dvl:Dvul_1977 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 765507..768269 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284307 YP_002479223.1 CDS Ddes_0636 NC_011883.1 768271 770295 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_1976 HlyD family type I secretion membrane fusion protein; HlyD family type I secretion membrane fusion protein 768271..770295 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284308 YP_002479224.1 CDS Ddes_0637 NC_011883.1 770317 772467 D TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; KEGG: dvl:Dvul_1974 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein 770317..772467 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284309 YP_002479225.1 CDS Ddes_0638 NC_011883.1 772479 773699 D PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4925 glycosyl transferase, group 1; group 1 glycosyl transferase 772479..773699 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284310 YP_002479226.1 CDS Ddes_0639 NC_011883.1 774019 776901 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein family 3; KEGG: cdf:CD1476 putative signaling protein; diguanylate cyclase/phosphodiesterase complement(774019..776901) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284311 YP_002479227.1 CDS Ddes_0640 NC_011883.1 777790 778104 D PFAM: helix-turn-helix domain protein; KEGG: hau:Haur_2753 XRE family transcriptional regulator; XRE family transcriptional regulator 777790..778104 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284312 YP_002479228.1 CDS Ddes_0641 NC_011883.1 778155 779267 R PFAM: aminotransferase class V; KEGG: ade:Adeh_2994 alanine-glyoxylate aminotransferase; alanine--glyoxylate transaminase complement(778155..779267) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284313 YP_002479229.1 CDS Ddes_0642 NC_011883.1 779566 780945 D PFAM: amino acid permease-associated region; KEGG: pae:PA3000 aromatic amino acid transport protein AroP1; amino acid permease-associated protein 779566..780945 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284314 YP_002479230.1 CDS Ddes_0643 NC_011883.1 781233 782126 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pfl:PFL_2613 hypothetical protein; hypothetical protein 781233..782126 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284315 YP_002479231.1 CDS Ddes_0644 NC_011883.1 782699 782923 D PFAM: FeoA family protein; KEGG: rrs:RoseRS_0553 FeoA family protein; FeoA family protein 782699..782923 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284316 YP_002479232.1 CDS Ddes_0645 NC_011883.1 782938 783162 D PFAM: FeoA family protein; KEGG: afw:Anae109_4104 FeoA family protein; FeoA family protein 782938..783162 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284317 YP_002479233.1 CDS Ddes_0646 NC_011883.1 783159 785639 D TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: abu:Abu_1854 ferrous iron transport protein B; small GTP-binding protein 783159..785639 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284318 YP_002479234.1 CDS Ddes_0647 NC_011883.1 785658 785975 D KEGG: abu:Abu_1855 hypothetical protein; hypothetical protein 785658..785975 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284319 YP_002479235.1 CDS Ddes_0648 NC_011883.1 786041 786865 D KEGG: rpc:RPC_1958 hypothetical protein; hypothetical protein 786041..786865 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284320 YP_002479236.1 CDS Ddes_0649 NC_011883.1 787168 789597 R KEGG: drm:Dred_3287 hypothetical protein; hypothetical protein complement(787168..789597) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284321 YP_002479237.1 CDS Ddes_0650 NC_011883.1 790753 791400 R PFAM: protein of unknown function DUF615; KEGG: lch:Lcho_1222 hypothetical protein; hypothetical protein complement(790753..791400) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284323 YP_002479238.1 CDS Ddes_0651 NC_011883.1 791427 792338 R TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dvl:Dvul_2015 4-hydroxybenzoate polyprenyltransferase, putative; 4-hydroxybenzoate polyprenyltransferase complement(791427..792338) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284324 YP_002479239.1 CDS Ddes_0652 NC_011883.1 792487 793293 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dvl:Dvul_2017 molybdenum cofactor synthesis domain-containing protein; molybdenum cofactor synthesis domain-containing protein complement(792487..793293) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284325 YP_002479240.1 CDS Ddes_0653 NC_011883.1 793446 793949 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 793446..793949 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284326 YP_002479241.1 CDS Ddes_0654 NC_011883.1 794033 795763 D TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: dvu:DVU3063 integral membrane protein MviN; integral membrane protein MviN 794033..795763 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284327 YP_002479242.1 CDS Ddes_0655 NC_011883.1 795785 796870 D KEGG: dvl:Dvul_0315 multi-sensor hybrid histidine kinase; hypothetical protein 795785..796870 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284328 YP_002479243.1 CDS Ddes_0656 NC_011883.1 797089 798732 D KEGG: dvl:Dvul_0317 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 797089..798732 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284329 YP_002479244.1 CDS Ddes_0657 NC_011883.1 798928 800289 R PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_0431 response regulator receiver; hypothetical protein complement(798928..800289) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284330 YP_002479245.1 CDS Ddes_0658 NC_011883.1 800532 800876 D hypothetical protein 800532..800876 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284331 YP_002479246.1 CDS rpsJ NC_011883.1 801034 801351 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 801034..801351 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284332 YP_002479247.1 CDS rplD NC_011883.1 802006 802638 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 802006..802638 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284334 YP_002479248.1 CDS rplW NC_011883.1 802641 802931 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 802641..802931 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284335 YP_002479249.1 CDS rplB NC_011883.1 802934 803782 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 802934..803782 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284336 YP_002479250.1 CDS rpsS NC_011883.1 803792 804076 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 803792..804076 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284337 YP_002479251.1 CDS rplV NC_011883.1 804086 804424 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 804086..804424 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284338 YP_002479252.1 CDS rpsC NC_011883.1 804428 805069 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 804428..805069 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284339 YP_002479253.1 CDS rplP NC_011883.1 805069 805482 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 805069..805482 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284340 YP_002479254.1 CDS Ddes_0668 NC_011883.1 805482 805712 D PFAM: ribosomal protein L29; KEGG: dvl:Dvul_1757 50S ribosomal protein L29; 50S ribosomal protein L29 805482..805712 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284341 YP_002479255.1 CDS rpsQ NC_011883.1 805714 805977 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 805714..805977 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284342 YP_002479256.1 CDS rplN NC_011883.1 805987 806355 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 805987..806355 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284343 YP_002479257.1 CDS rplX NC_011883.1 806365 806697 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 806365..806697 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284344 YP_002479258.1 CDS rplE NC_011883.1 806707 807246 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 806707..807246 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284345 YP_002479259.1 CDS rpsN NC_011883.1 807257 807442 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 807257..807442 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284346 YP_002479260.1 CDS rpsH NC_011883.1 807546 807926 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 807546..807926 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284347 YP_002479261.1 CDS rplF NC_011883.1 807938 808477 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 807938..808477 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284348 YP_002479262.1 CDS rplR NC_011883.1 808488 808847 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 808488..808847 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284349 YP_002479263.1 CDS rpsE NC_011883.1 808849 809361 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 808849..809361 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284350 YP_002479264.1 CDS Ddes_0678 NC_011883.1 809364 809540 D PFAM: ribosomal protein L30; KEGG: amt:Amet_4460 ribosomal protein L30; 50S ribosomal protein L30 809364..809540 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284351 YP_002479265.1 CDS rplO NC_011883.1 809560 810021 D late assembly protein; 50S ribosomal protein L15 809560..810021 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284352 YP_002479266.1 CDS secY NC_011883.1 810248 811561 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 810248..811561 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284353 YP_002479267.1 CDS Ddes_0681 NC_011883.1 811579 812373 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dvl:Dvul_1744 methionine aminopeptidase, type I; methionine aminopeptidase 811579..812373 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284354 YP_002479268.1 CDS rpmJ NC_011883.1 812511 812624 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 812511..812624 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284355 YP_002479269.1 CDS rpsM NC_011883.1 812640 813008 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 812640..813008 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284356 YP_002479270.1 CDS Ddes_0684 NC_011883.1 813133 813522 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 813133..813522 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284357 YP_002479271.1 CDS rpsD NC_011883.1 813567 814193 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 813567..814193 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284358 YP_002479272.1 CDS Ddes_0686 NC_011883.1 814206 815249 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 814206..815249 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284359 YP_002479273.1 CDS rplQ NC_011883.1 815239 815751 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 815239..815751 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284360 YP_002479274.1 CDS Ddes_0688 NC_011883.1 816490 817203 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gme:Gmet_0361 short chain dehydrogenase; short chain dehydrogenase complement(816490..817203) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284361 YP_002479275.1 CDS Ddes_0689 NC_011883.1 817798 818784 D TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dvl:Dvul_1736 selenide, water dikinase; selenide, water dikinase 817798..818784 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284362 YP_002479276.1 CDS Ddes_0690 NC_011883.1 819321 820679 D TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: dvl:Dvul_1735 trigger factor; trigger factor 819321..820679 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284364 YP_002479277.1 CDS Ddes_0691 NC_011883.1 820773 821381 D PFAM: peptidase S14 ClpP; KEGG: lip:LI0794 protease subunit of ATP-dependent Clp proteases; endopeptidase Clp 820773..821381 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284365 YP_002479278.1 CDS clpX NC_011883.1 821384 822676 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 821384..822676 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284366 YP_002479279.1 CDS Ddes_0693 NC_011883.1 822966 823286 D hypothetical protein 822966..823286 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284367 YP_002479280.1 CDS Ddes_0694 NC_011883.1 823352 825793 D KEGG: dvl:Dvul_1732 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 823352..825793 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284368 YP_002479281.1 CDS Ddes_0695 NC_011883.1 826202 826624 D KEGG: dvl:Dvul_0352 hypothetical protein; hypothetical protein 826202..826624 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284369 YP_002479282.1 CDS truA NC_011883.1 826866 827645 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(826866..827645) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284370 YP_002479283.1 CDS Ddes_0697 NC_011883.1 827645 828964 R KEGG: dvu:DVU0912 hypothetical protein; hypothetical protein complement(827645..828964) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284371 YP_002479284.1 CDS Ddes_0698 NC_011883.1 828984 829427 R TIGRFAM: flagellar export protein FliJ; KEGG: dvl:Dvul_2071 flagellar export protein FliJ; flagellar export protein FliJ complement(828984..829427) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284372 YP_002479285.1 CDS Ddes_0699 NC_011883.1 829640 830449 R TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dvu:DVU0931 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(829640..830449) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284373 YP_002479286.1 CDS Ddes_0700 NC_011883.1 830856 832241 D KEGG: dvu:DVU1005 hypothetical protein; hypothetical protein 830856..832241 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284374 YP_002479287.1 CDS Ddes_0701 NC_011883.1 832292 832999 D KEGG: dvl:Dvul_1982 cobalbumin biosynthesis enzyme; Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase-like protein 832292..832999 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284375 YP_002479288.1 CDS Ddes_0702 NC_011883.1 832993 833670 D KEGG: dvl:Dvul_1981 hypothetical protein; hypothetical protein 832993..833670 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284376 YP_002479289.1 CDS Ddes_0703 NC_011883.1 833688 834131 D hypothetical protein 833688..834131 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284377 YP_002479290.1 CDS Ddes_0704 NC_011883.1 834243 834683 D hypothetical protein 834243..834683 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284378 YP_002479291.1 CDS Ddes_0705 NC_011883.1 834724 835059 R hypothetical protein complement(834724..835059) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284379 YP_002479292.1 CDS Ddes_0706 NC_011883.1 835075 835287 R hypothetical protein complement(835075..835287) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284380 YP_002479293.1 CDS Ddes_0707 NC_011883.1 835554 836129 R KEGG: ecv:APECO1_4051 hypothetical protein; hypothetical protein complement(835554..836129) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284381 YP_002479294.1 CDS Ddes_0708 NC_011883.1 836129 836587 R KEGG: nmu:Nmul_A1437 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(836129..836587) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284382 YP_002479295.1 CDS Ddes_0709 NC_011883.1 836829 838898 R KEGG: dvu:DVU1714 hypothetical protein; hypothetical protein complement(836829..838898) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284383 YP_002479296.1 CDS Ddes_0710 NC_011883.1 838901 839257 R KEGG: bvi:Bcep1808_1285 hypothetical protein; hypothetical protein complement(838901..839257) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284384 YP_002479297.1 CDS Ddes_0711 NC_011883.1 839259 840833 R KEGG: mbb:BCG_0623c PE-PGRS family protein; hypothetical protein complement(839259..840833) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284385 YP_002479298.1 CDS Ddes_0712 NC_011883.1 840945 841535 R KEGG: dvl:Dvul_0652 hypothetical protein; hypothetical protein complement(840945..841535) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284386 YP_002479299.1 CDS Ddes_0713 NC_011883.1 841772 842218 R KEGG: CORO1B, LOC476007; coronin, actin binding protein, 1B; hypothetical protein complement(841772..842218) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284387 YP_002479300.1 CDS Ddes_0714 NC_011883.1 842348 843337 R KEGG: ppg:PputGB1_1751 hypothetical protein; hypothetical protein complement(842348..843337) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284388 YP_002479301.1 CDS Ddes_0715 NC_011883.1 843474 844124 R KEGG: ppg:PputGB1_1750 hypothetical protein; hypothetical protein complement(843474..844124) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284389 YP_002479302.1 CDS Ddes_0716 NC_011883.1 844114 844458 R hypothetical protein complement(844114..844458) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284390 YP_002479303.1 CDS Ddes_0717 NC_011883.1 844458 846251 R KEGG: dvl:Dvul_0646 hypothetical protein; hypothetical protein complement(844458..846251) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284391 YP_002479304.1 CDS Ddes_0718 NC_011883.1 846335 847201 R KEGG: dvu:DVU1723 hypothetical protein; hypothetical protein complement(846335..847201) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284392 YP_002479305.1 CDS Ddes_0719 NC_011883.1 847185 848570 R KEGG: mms:mma_2206 hypothetical protein; hypothetical protein complement(847185..848570) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284393 YP_002479306.1 CDS Ddes_0720 NC_011883.1 848744 849121 R hypothetical protein complement(848744..849121) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284394 YP_002479307.1 CDS Ddes_0721 NC_011883.1 849121 849540 R KEGG: rce:RC1_1109 hypothetical protein; hypothetical protein complement(849121..849540) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284395 YP_002479308.1 CDS Ddes_0722 NC_011883.1 849713 850024 R KEGG: dvu:DVU1507 hypothetical protein; hypothetical protein complement(849713..850024) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284396 YP_002479309.1 CDS Ddes_0723 NC_011883.1 850024 850707 R PFAM: protein of unknown function DUF847; KEGG: dvu:DVU2866 hypothetical protein; hypothetical protein complement(850024..850707) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284397 YP_002479310.1 CDS Ddes_0724 NC_011883.1 850940 851593 R PFAM: Mor transcription activator domain protein; KEGG: lip:LI0834 hypothetical protein; Mor transcription activator domain-containing protein complement(850940..851593) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284398 YP_002479311.1 CDS Ddes_0725 NC_011883.1 851580 851843 R hypothetical protein complement(851580..851843) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284399 YP_002479312.1 CDS Ddes_0726 NC_011883.1 852168 852845 D PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: dvu:DVU1144 Cro/CI family transcriptional regulator; putative phage repressor 852168..852845 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284400 YP_002479313.1 CDS Ddes_0727 NC_011883.1 853890 854318 D PFAM: nucleic acid binding OB-fold tRNA/helicase-type; conserved hypothetical protein; KEGG: pmr:PMI3093 hypothetical protein; hypothetical protein 853890..854318 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284401 YP_002479314.1 CDS Ddes_0728 NC_011883.1 854584 854967 D PFAM: nucleic acid binding OB-fold tRNA/helicase-type; conserved hypothetical protein; KEGG: sdy:SDY_3215 hypothetical protein; hypothetical protein 854584..854967 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284402 YP_002479315.1 CDS Ddes_0729 NC_011883.1 855020 855424 D PFAM: conserved hypothetical protein; KEGG: spl:Spea_4112 hypothetical protein; hypothetical protein 855020..855424 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284403 YP_002479316.1 CDS Ddes_0730 NC_011883.1 855429 856208 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: har:HEAR0051 putative two-component system regulatory protein; winged helix family two component transcriptional regulator 855429..856208 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284404 YP_002479317.1 CDS Ddes_0731 NC_011883.1 856208 857899 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mms:mma_0058 two-component system sensor histidine kinase ColS; histidine kinase 856208..857899 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284405 YP_002479318.1 CDS Ddes_0732 NC_011883.1 857899 859221 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ypy:YPK_1332 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 857899..859221 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284406 YP_002479319.1 CDS Ddes_0733 NC_011883.1 859263 862514 D PFAM: acriflavin resistance protein; KEGG: rpi:Rpic_4183 acriflavin resistance protein; acriflavin resistance protein 859263..862514 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284407 YP_002479320.1 CDS Ddes_0734 NC_011883.1 862610 865840 D PFAM: acriflavin resistance protein; KEGG: mms:mma_1682 AcrB/AcrD/AcrF family membrane protein; acriflavin resistance protein 862610..865840 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284408 YP_002479321.1 CDS Ddes_0735 NC_011883.1 866199 866726 R hypothetical protein complement(866199..866726) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284409 YP_002479322.1 CDS Ddes_0736 NC_011883.1 866749 868362 R PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: dvl:Dvul_1882 integral membrane protein MviN; virulence factor MVIN family protein complement(866749..868362) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284410 YP_002479323.1 CDS Ddes_0737 NC_011883.1 868362 870920 R KEGG: dvl:Dvul_0774 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; ribonuclease R complement(868362..870920) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284411 YP_002479324.1 CDS Ddes_0738 NC_011883.1 871020 871724 R PFAM: protein of unknown function UPF0005; KEGG: dvl:Dvul_0772 hypothetical protein; hypothetical protein complement(871020..871724) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284412 YP_002479325.1 CDS Ddes_0739 NC_011883.1 872058 872657 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN2085 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); cyclophilin type peptidyl-prolyl cis-trans isomerase 872058..872657 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284413 YP_002479326.1 CDS ruvC NC_011883.1 873100 873621 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(873100..873621) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284414 YP_002479327.1 CDS Ddes_0741 NC_011883.1 873623 874426 R PFAM: protein of unknown function DUF140; KEGG: dvu:DVU1246 hypothetical protein; hypothetical protein complement(873623..874426) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284415 YP_002479328.1 CDS Ddes_0742 NC_011883.1 874434 875318 R PFAM: Sporulation domain protein; KEGG: dvl:Dvul_1815 sporulation domain-containing protein; sporulation domain-containing protein complement(874434..875318) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284416 YP_002479329.1 CDS argS NC_011883.1 875664 877316 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(875664..877316) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284417 YP_002479330.1 CDS Ddes_0744 NC_011883.1 877473 878414 R PFAM: Acyl transferase; KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase; acyl transferase complement(877473..878414) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284418 YP_002479331.1 CDS Ddes_0745 NC_011883.1 878850 879548 D PFAM: glucose inhibited division protein; KEGG: dvl:Dvul_1812 glucose inhibited division protein; glucose inhibited division protein 878850..879548 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284419 YP_002479332.1 CDS Ddes_0746 NC_011883.1 879550 882000 D PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: dvu:DVU1252 hypothetical protein; oligosaccharyl transferase STT3 subunit 879550..882000 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284420 YP_002479333.1 CDS Ddes_0747 NC_011883.1 882028 882501 R PFAM: protein of unknown function DUF163; KEGG: dvl:Dvul_1809 hypothetical protein; hypothetical protein complement(882028..882501) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284421 YP_002479334.1 CDS Ddes_0748 NC_011883.1 882500 883171 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dvl:Dvul_1808 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 882500..883171 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284422 YP_002479335.1 CDS Ddes_0749 NC_011883.1 883198 883743 R PFAM: regulatory protein MarR; SMART: iron dependent repressor; KEGG: cac:CAC0162 MarR family transcriptional regulator; MarR family transcriptional regulator complement(883198..883743) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284423 YP_002479336.1 CDS Ddes_0750 NC_011883.1 883876 884514 D PFAM: NUDIX hydrolase; KEGG: dvl:Dvul_0997 NUDIX hydrolase; NUDIX hydrolase 883876..884514 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284424 YP_002479337.1 CDS Ddes_0751 NC_011883.1 884514 886379 D PFAM: Carboxylyase-related protein; KEGG: dvu:DVU2320 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; carboxylyase-like protein 884514..886379 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284425 YP_002479338.1 CDS Ddes_0752 NC_011883.1 886397 888079 D KEGG: dvl:Dvul_1524 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; NAD+ synthetase 886397..888079 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284426 YP_002479339.1 CDS glpX NC_011883.1 888416 889399 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 888416..889399 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284427 YP_002479340.1 CDS Ddes_0754 NC_011883.1 889427 889990 D KEGG: dvl:Dvul_1593 hypothetical protein; hypothetical protein 889427..889990 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284428 YP_002479341.1 CDS Ddes_0755 NC_011883.1 890195 890743 D PFAM: 4-vinyl reductase 4VR; KEGG: mhu:Mhun_2966 4-vinyl reductase, 4VR; 4-vinyl reductase 4VR 890195..890743 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284429 YP_002479342.1 CDS Ddes_0756 NC_011883.1 890849 891364 R hypothetical protein complement(890849..891364) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284430 YP_002479343.1 CDS Ddes_0757 NC_011883.1 891429 891629 D hypothetical protein 891429..891629 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284431 YP_002479344.1 CDS Ddes_0758 NC_011883.1 891622 892644 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: maq:Maqu_2940 sensor diguanylate cyclase; diguanylate cyclase 891622..892644 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284432 YP_002479345.1 CDS Ddes_0759 NC_011883.1 893055 893618 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dvu:DVU0318 TPR domain-containing protein; hypothetical protein complement(893055..893618) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284433 YP_002479346.1 CDS Ddes_0760 NC_011883.1 894242 894934 R KEGG: dvu:DVU1028 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase complement(894242..894934) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284434 YP_002479347.1 CDS Ddes_0761 NC_011883.1 894931 896091 R TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dvl:Dvul_1964 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase complement(894931..896091) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284435 YP_002479348.1 CDS Ddes_0762 NC_011883.1 896615 897055 R PFAM: UspA domain protein; KEGG: dvl:Dvul_1963 UspA domain-containing protein; UspA domain-containing protein complement(896615..897055) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284436 YP_002479349.1 CDS Ddes_0763 NC_011883.1 897351 897887 D KEGG: dvl:Dvul_1962 hypothetical protein; hypothetical protein 897351..897887 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284437 YP_002479350.1 CDS Ddes_0764 NC_011883.1 898100 898246 D hypothetical protein 898100..898246 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284438 YP_002479351.1 CDS Ddes_0765 NC_011883.1 898345 898875 R KEGG: pca:Pcar_1711 hypothetical protein; hypothetical protein complement(898345..898875) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284439 YP_002479352.1 CDS Ddes_0766 NC_011883.1 899118 899315 R KEGG: nAcRalpha-7E; nicotinic Acetylcholine Receptor alpha 7E; K05312 cholinergic receptor, nicotinic, invertebrate; hypothetical protein complement(899118..899315) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284440 YP_002479353.1 CDS Ddes_0767 NC_011883.1 899375 899599 R KEGG: fno:Fnod_0248 hypothetical protein; hypothetical protein complement(899375..899599) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284441 YP_002479354.1 CDS Ddes_0768 NC_011883.1 899903 901924 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dol:Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB; PAS/PAC sensor signal transduction histidine kinase 899903..901924 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284442 YP_002479355.1 CDS Ddes_0769 NC_011883.1 901973 903334 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dol:Dole_0427 two component, sigma54 specific, Fis family transcriptional regulator; Fis family two component sigma-54 specific transcriptional regulator 901973..903334 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284443 YP_002479356.1 CDS Ddes_0770 NC_011883.1 903376 903741 D PFAM: diacylglycerol kinase; KEGG: azo:azo0859 probable diacylglycerol kinase; diacylglycerol kinase 903376..903741 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284444 YP_002479357.1 CDS Ddes_0771 NC_011883.1 903825 904814 R KEGG: ctc:CTC01028 alkaline phosphatase; hypothetical protein complement(903825..904814) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284445 YP_002479358.1 CDS Ddes_0772 NC_011883.1 904814 905224 R hypothetical protein complement(904814..905224) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284446 YP_002479359.1 CDS Ddes_0773 NC_011883.1 905273 906037 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: gme:Gmet_0369 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(905273..906037) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284447 YP_002479360.1 CDS Ddes_0774 NC_011883.1 906047 907744 R KEGG: gsu:GSU0743 NAD-dependent dehydrogenase subunit; NAD-dependent dehydrogenase subunit complement(906047..907744) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284448 YP_002479361.1 CDS Ddes_0775 NC_011883.1 907902 909395 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gme:Gmet_0372 NADH/ubiquinone/plastoquinone (complex I); NADH dehydrogenase (quinone) complement(907902..909395) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284449 YP_002479362.1 CDS Ddes_0776 NC_011883.1 909401 910024 R KEGG: gbm:Gbem_3190 NAD-dependent dehydrogenase subunit; NAD-dependent dehydrogenase subunit complement(909401..910024) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284450 YP_002479363.1 CDS Ddes_0777 NC_011883.1 910029 910970 R KEGG: ade:Adeh_3656 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 complement(910029..910970) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284451 YP_002479364.1 CDS Ddes_0778 NC_011883.1 910967 913015 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: afw:Anae109_3780 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(910967..913015) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284452 YP_002479365.1 CDS Ddes_0779 NC_011883.1 913042 913998 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: dvl:Dvul_0782 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(913042..913998) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284453 YP_002479366.1 CDS Ddes_0780 NC_011883.1 914146 914967 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dvl:Dvul_0185 TatD family hydrolase; TatD family hydrolase 914146..914967 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284454 YP_002479367.1 CDS Ddes_0781 NC_011883.1 915507 916343 D TIGRFAM: phosphate binding protein; KEGG: lip:LI1028 phosphate-binding protein; phosphate binding protein 915507..916343 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284455 YP_002479368.1 CDS Ddes_0782 NC_011883.1 916330 917289 D KEGG: lip:LI1029 phosphate transporter permease PstC; phosphate transporter permease PstC 916330..917289 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284456 YP_002479369.1 CDS Ddes_0783 NC_011883.1 917286 918173 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 917286..918173 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284457 YP_002479370.1 CDS Ddes_0784 NC_011883.1 918170 918973 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lip:LI1031 phosphate ABC transporter ATP-binding protein; ABC transporter-like protein 918170..918973 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284458 YP_002479371.1 CDS Ddes_0785 NC_011883.1 919155 920138 D TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoyltransferase and lipoate-protein ligase; KEGG: bcy:Bcer98_0839 lipoyltransferase and lipoate-protein ligase; lipoyltransferase and lipoate-protein ligase 919155..920138 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284459 YP_002479372.1 CDS Ddes_0786 NC_011883.1 920381 921463 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dvu:DVU1684 glycine cleavage system T protein; glycine cleavage system T protein 920381..921463 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284460 YP_002479373.1 CDS Ddes_0787 NC_011883.1 921584 921970 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dvl:Dvul_1650 glycine cleavage system H protein; glycine cleavage system H protein 921584..921970 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284461 YP_002479374.1 CDS Ddes_0788 NC_011883.1 922292 923623 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 922292..923623 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284462 YP_002479375.1 CDS Ddes_0789 NC_011883.1 923620 925068 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 923620..925068 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284463 YP_002479376.1 CDS Ddes_0790 NC_011883.1 925601 926332 R PFAM: protein of unknown function DUF208; KEGG: dvl:Dvul_0320 hypothetical protein; hypothetical protein complement(925601..926332) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284465 YP_002479377.1 CDS Ddes_0791 NC_011883.1 926305 929535 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: dvu:DVU3055 ribonuclease; ribonuclease, Rne/Rng family complement(926305..929535) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284466 YP_002479378.1 CDS Ddes_0792 NC_011883.1 929879 930568 R PFAM: metallophosphoesterase; KEGG: dvu:DVU0367 Ser/Thr protein phosphatase family protein; metallophosphoesterase complement(929879..930568) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284467 YP_002479379.1 CDS Ddes_0793 NC_011883.1 930641 931435 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dvu:DVU0366 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase 930641..931435 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284468 YP_002479380.1 CDS Ddes_0794 NC_011883.1 931426 932184 D PFAM: protein of unknown function DUF152; KEGG: dvl:Dvul_2619 hypothetical protein; hypothetical protein 931426..932184 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284469 YP_002479381.1 CDS Ddes_0795 NC_011883.1 932162 932791 R hypothetical protein complement(932162..932791) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284470 YP_002479382.1 CDS Ddes_0796 NC_011883.1 932980 933870 D PFAM: transport system permease protein; KEGG: dvl:Dvul_2311 transport system permease protein; transport system permease 932980..933870 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284471 YP_002479383.1 CDS Ddes_0797 NC_011883.1 933867 934823 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU0648 iron compound ABC transporter, ATP-binding protein; ABC transporter-like protein 933867..934823 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284472 YP_002479384.1 CDS Ddes_0798 NC_011883.1 934843 935763 D PFAM: periplasmic binding protein; KEGG: dvl:Dvul_2313 periplasmic binding protein; periplasmic binding protein 934843..935763 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284473 YP_002479385.1 CDS Ddes_0799 NC_011883.1 935807 936517 D TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvl:Dvul_2314 precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase 935807..936517 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284474 YP_002479386.1 CDS Ddes_0800 NC_011883.1 936653 937657 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dvl:Dvul_2656 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(936653..937657) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284475 YP_002479387.1 CDS Ddes_0801 NC_011883.1 937657 938748 R PFAM: hydrogenase formation HypD protein; KEGG: dvl:Dvul_2657 hydrogenase formation HypD protein; hydrogenase formation HypD protein complement(937657..938748) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284476 YP_002479388.1 CDS argC NC_011883.1 939066 940121 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(939066..940121) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284477 YP_002479389.1 CDS Ddes_0803 NC_011883.1 940255 940593 R PFAM: Domain of unknown function DUF1844; KEGG: dvl:Dvul_2448 hypothetical protein; hypothetical protein complement(940255..940593) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284478 YP_002479390.1 CDS Ddes_0804 NC_011883.1 940839 942023 R PFAM: aminotransferase class V; KEGG: dvu:DVU0494 aminotransferase, class V; class V aminotransferase complement(940839..942023) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284479 YP_002479391.1 CDS Ddes_0805 NC_011883.1 942443 943978 R hypothetical protein complement(942443..943978) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284480 YP_002479392.1 CDS Ddes_0806 NC_011883.1 944070 945695 R KEGG: dvl:Dvul_1351 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; L-aspartate oxidase complement(944070..945695) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284481 YP_002479393.1 CDS Ddes_0807 NC_011883.1 945706 946752 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(945706..946752) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284482 YP_002479394.1 CDS Ddes_0808 NC_011883.1 946793 947665 R KEGG: dvl:Dvul_1353 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(946793..947665) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284483 YP_002479395.1 CDS Ddes_0809 NC_011883.1 947920 949548 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: dvl:Dvul_1354 magnesium transporter; magnesium transporter 947920..949548 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284484 YP_002479396.1 CDS Ddes_0810 NC_011883.1 949635 950306 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sus:Acid_7878 two component LuxR family transcriptional regulator; LuxR family two component transcriptional regulator 949635..950306 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284485 YP_002479397.1 CDS Ddes_0811 NC_011883.1 950720 951859 D PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0412 hypothetical protein; hypothetical protein 950720..951859 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284486 YP_002479398.1 CDS Ddes_0812 NC_011883.1 951896 952327 D KEGG: dvl:Dvul_0411 hypothetical protein; hypothetical protein 951896..952327 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284487 YP_002479399.1 CDS Ddes_0813 NC_011883.1 952510 954273 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvl:Dvul_0408 integral membrane sensor signal transduction histidine kinase; histidine kinase 952510..954273 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284488 YP_002479400.1 CDS Ddes_0814 NC_011883.1 954276 954674 D PFAM: response regulator receiver; KEGG: dvl:Dvul_0407 response regulator receiver protein; response regulator receiver protein 954276..954674 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284489 YP_002479401.1 CDS Ddes_0815 NC_011883.1 954671 955348 D KEGG: dvl:Dvul_0406 hypothetical protein; hypothetical protein 954671..955348 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284490 YP_002479402.1 CDS Ddes_0816 NC_011883.1 955388 955861 D PFAM: response regulator receiver; KEGG: dvl:Dvul_0404 response regulator receiver protein; response regulator receiver protein 955388..955861 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284491 YP_002479403.1 CDS Ddes_0817 NC_011883.1 955901 957256 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvu:DVU2967 sensor histidine kinase/response regulator; response regulator receiver sensor signal transduction histidine kinase 955901..957256 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284492 YP_002479404.1 CDS Ddes_0818 NC_011883.1 957551 958096 R KEGG: cvi:CV_4287 hypothetical protein; hypothetical protein complement(957551..958096) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284493 YP_002479405.1 CDS Ddes_0819 NC_011883.1 958455 959144 R PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dvu:DVU2686 S24 family peptidase; putative phage repressor complement(958455..959144) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284494 YP_002479406.1 CDS Ddes_0820 NC_011883.1 959406 960422 R KEGG: spl:Spea_1850 hypothetical protein; hypothetical protein complement(959406..960422) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284495 YP_002479407.1 CDS Ddes_0821 NC_011883.1 960898 962988 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dvu:DVU2309 methyl-accepting chemotaxis protein, putative; methyl-accepting chemotaxis sensory transducer 960898..962988 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284496 YP_002479408.1 CDS Ddes_0822 NC_011883.1 963171 964034 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dvl:Dvul_0958 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(963171..964034) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284497 YP_002479409.1 CDS Ddes_0823 NC_011883.1 964357 965199 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0957 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(964357..965199) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284498 YP_002479410.1 CDS Ddes_0824 NC_011883.1 965189 966397 R KEGG: dvl:Dvul_0956 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(965189..966397) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284499 YP_002479411.1 CDS Ddes_0825 NC_011883.1 967476 968438 R KEGG: msm:MSMEG_1846 polysulphide reductase, NrfD; hypothetical protein complement(967476..968438) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284500 YP_002479412.1 CDS Ddes_0826 NC_011883.1 968438 969310 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mmi:MMAR_5196 Fe-S-cluster-containing hydrogenase, HybA; 4Fe-4S ferredoxin complement(968438..969310) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284501 YP_002479413.1 CDS Ddes_0827 NC_011883.1 969300 972452 R KEGG: ank:AnaeK_0872 formate dehydrogenase, alpha subunit; Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha complement(969300..972452) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284502 YP_002479414.1 CDS Ddes_0828 NC_011883.1 972738 973994 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; KEGG: cpe:CPE1793 molybdenum cofactor biosynthesis protein MoeA; molybdenum cofactor synthesis domain-containing protein complement(972738..973994) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284503 YP_002479415.1 CDS Ddes_0829 NC_011883.1 973996 974793 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: pca:Pcar_1840 formate dehydrogenase accessory protein; formate dehydrogenase family accessory protein FdhD complement(973996..974793) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284504 YP_002479416.1 CDS Ddes_0830 NC_011883.1 975096 975557 D hypothetical protein 975096..975557 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284505 YP_002479417.1 CDS Ddes_0831 NC_011883.1 975572 976618 D KEGG: afw:Anae109_2612 cellulose biosynthesis (CelD)-like protein; hypothetical protein 975572..976618 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284506 YP_002479418.1 CDS Ddes_0832 NC_011883.1 976950 977627 D KEGG: seh:SeHA_C4728 heat resistant agglutinin 1; heat resistant agglutinin 1 976950..977627 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284507 YP_002479419.1 CDS Ddes_0833 NC_011883.1 978500 979948 D PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: dvl:Dvul_0991 chromosomal replication initiator protein DnaA; Chromosomal replication initiator DnaA 978500..979948 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284508 YP_002479420.1 CDS Ddes_0834 NC_011883.1 980215 980748 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: lip:LI0442 processing of HyaA and HyaB proteins; hydrogenase maturation protease complement(980215..980748) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284509 YP_002479421.1 CDS Ddes_0835 NC_011883.1 980990 981694 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: sbc:SbBS512_E2341 Ni/Fe-hydrogenase 1 B-type cytochrome subunit HyaC; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(980990..981694) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284510 YP_002479422.1 CDS Ddes_0836 NC_011883.1 981748 983562 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: lip:LI0440 hydrogenase-1 large subunit; nickel-dependent hydrogenase large subunit complement(981748..983562) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284511 YP_002479423.1 CDS Ddes_0837 NC_011883.1 983574 984677 R KEGG: lip:LI0439 hydrogenase-1 small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA complement(983574..984677) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284512 YP_002479424.1 CDS Ddes_0838 NC_011883.1 984903 985097 R hypothetical protein complement(984903..985097) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284513 YP_002479425.1 CDS Ddes_0839 NC_011883.1 985228 986829 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pis:Pisl_0176 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; hypothetical protein complement(985228..986829) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284514 YP_002479426.1 CDS Ddes_0840 NC_011883.1 986841 987779 R PFAM: Nitrate reductase gamma subunit; KEGG: afu:AF0545 hypothetical protein; Nitrate reductase gamma subunit complement(986841..987779) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284515 YP_002479427.1 CDS Ddes_0842 NC_011883.1 988727 989143 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvl:Dvul_1205 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator complement(988727..989143) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284517 YP_002479428.1 CDS Ddes_0843 NC_011883.1 989490 990035 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvl:Dvul_1204 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 989490..990035 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284518 YP_002479429.1 CDS Ddes_0844 NC_011883.1 990079 990312 D KEGG: dvl:Dvul_1201 response regulator receiver protein; response regulator receiver protein 990079..990312 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284519 YP_002479430.1 CDS Ddes_0845 NC_011883.1 990514 991902 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvl:Dvul_2410 hypothetical protein; hypothetical protein complement(990514..991902) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284520 YP_002479431.1 CDS Ddes_0846 NC_011883.1 991947 992627 R KEGG: dvl:Dvul_2409 hmc operon protein 5; hmc operon protein 5 complement(991947..992627) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284521 YP_002479432.1 CDS Ddes_0847 NC_011883.1 992678 993082 R KEGG: dvl:Dvul_2405 cytochrome c, class III; hypothetical protein complement(992678..993082) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284522 YP_002479433.1 CDS Ddes_0848 NC_011883.1 993206 993490 R hypothetical protein complement(993206..993490) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284523 YP_002479434.1 CDS Ddes_0849 NC_011883.1 994486 994998 D PFAM: SEC-C motif domain protein; KEGG: dvl:Dvul_2736 SecC motif-containing protein; SEC-C motif domain-containing protein 994486..994998 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284524 YP_002479435.1 CDS Ddes_0850 NC_011883.1 994995 995381 D KEGG: dvl:Dvul_2735 hypothetical protein; hypothetical protein 994995..995381 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284525 YP_002479436.1 CDS Ddes_0851 NC_011883.1 995481 996821 D PFAM: phosphoglucose isomerase (PGI); KEGG: dvu:DVU3222 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 995481..996821 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284526 YP_002479437.1 CDS Ddes_0852 NC_011883.1 996825 998411 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvl:Dvul_0167 integral membrane sensor signal transduction histidine kinase; histidine kinase 996825..998411 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284527 YP_002479438.1 CDS Ddes_0853 NC_011883.1 998416 999795 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvu:DVU3220 sigma-54 dependent transcriptional regulator/response regulator; Fis family two component sigma-54 specific transcriptional regulator 998416..999795 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284528 YP_002479439.1 CDS Ddes_0854 NC_011883.1 1001155 1001940 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cko:CKO_04630 transcriptional regulator NanR; GntR family transcriptional regulator 1001155..1001940 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284529 YP_002479440.1 CDS Ddes_0855 NC_011883.1 1002509 1003351 R PFAM: amidohydrolase 2; KEGG: dvu:DVU0885 amidohydrolase family protein; amidohydrolase 2 complement(1002509..1003351) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284531 YP_002479441.1 CDS Ddes_0856 NC_011883.1 1003354 1004325 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dvl:Dvul_1662 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(1003354..1004325) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284532 YP_002479442.1 CDS Ddes_0857 NC_011883.1 1004545 1005012 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: lip:LI0691 outer membrane protein and related peptidoglycan-associated (LipO)proteins; peptidoglycan-associated lipoprotein complement(1004545..1005012) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284533 YP_002479443.1 CDS Ddes_0858 NC_011883.1 1005237 1006556 R PFAM: WD40 domain protein beta Propeller; KEGG: dvl:Dvul_0278 WD40 domain-containing protein; WD40 domain-containing protein complement(1005237..1006556) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284534 YP_002479444.1 CDS Ddes_0859 NC_011883.1 1006587 1007837 R KEGG: dvl:Dvul_0279 TonB family protein; hypothetical protein complement(1006587..1007837) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284535 YP_002479445.1 CDS Ddes_0860 NC_011883.1 1007880 1008851 R TIGRFAM: protein TolA; KEGG: dvl:Dvul_0280 TonB domain-containing protein; protein TolA complement(1007880..1008851) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284536 YP_002479446.1 CDS Ddes_0861 NC_011883.1 1008858 1009316 R TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvl:Dvul_0281 biopolymer transport protein ExbD/TolR; protein TolR complement(1008858..1009316) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284537 YP_002479447.1 CDS Ddes_0862 NC_011883.1 1009318 1010013 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dvl:Dvul_0282 MotA/TolQ/ExbB proton channel; protein TolQ complement(1009318..1010013) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284538 YP_002479448.1 CDS Ddes_0863 NC_011883.1 1010939 1012369 D PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_0283 outer membrane efflux protein; outer membrane efflux protein 1010939..1012369 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284539 YP_002479449.1 CDS Ddes_0864 NC_011883.1 1012403 1014061 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dvu:DVU0876 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1012403..1014061 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284540 YP_002479450.1 CDS Ddes_0865 NC_011883.1 1014336 1014596 D hypothetical protein 1014336..1014596 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284541 YP_002479451.1 CDS Ddes_0866 NC_011883.1 1015919 1017082 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: lip:LI0675 membrane protease subunits, stomatin/prohibitin homologs; HflK protein 1015919..1017082 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284542 YP_002479452.1 CDS Ddes_0867 NC_011883.1 1017082 1017930 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: lip:LI0676 membrane protease subunits, stomatin/prohibitin homologs; HflC protein 1017082..1017930 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284543 YP_002479453.1 CDS Ddes_0868 NC_011883.1 1017930 1018658 D PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dvl:Dvul_2281 putative phage repressor; putative phage repressor 1017930..1018658 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284544 YP_002479454.1 CDS Ddes_0869 NC_011883.1 1018661 1019911 D KEGG: dvu:DVU0677 transglycosylase domain-containing protein; Membrane-bound lytic murein transglycosylase B-like protein 1018661..1019911 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284545 YP_002479455.1 CDS Ddes_0870 NC_011883.1 1020244 1020450 R hypothetical protein complement(1020244..1020450) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284546 YP_002479456.1 CDS Ddes_0871 NC_011883.1 1020505 1021161 D KEGG: dvl:Dvul_2650 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1020505..1021161 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284547 YP_002479457.1 CDS Ddes_0872 NC_011883.1 1021124 1022044 D KEGG: dvl:Dvul_2649 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 1021124..1022044 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284548 YP_002479458.1 CDS Ddes_0873 NC_011883.1 1022359 1023276 D PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: dsy:DSY1618 hypothetical protein; hypothetical protein 1022359..1023276 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284549 YP_002479459.1 CDS Ddes_0874 NC_011883.1 1023404 1024381 R PFAM: UbiA prenyltransferase; KEGG: sat:SYN_02622 1,4-dihydroxy-2-naphthoate polyprenyltransferase; UbiA prenyltransferase complement(1023404..1024381) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284550 YP_002479460.1 CDS Ddes_0875 NC_011883.1 1024384 1024881 R KEGG: dvl:Dvul_2887 polysaccharide biosynthesis domain-containing protein; polysaccharide biosynthesis domain-containing protein complement(1024384..1024881) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284551 YP_002479461.1 CDS Ddes_0876 NC_011883.1 1024883 1025998 R TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: dvu:DVU0073 CDP-glucose-4,6-dehydratase, putative; CDP-glucose 4,6-dehydratase complement(1024883..1025998) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284552 YP_002479462.1 CDS Ddes_0877 NC_011883.1 1026130 1026894 R TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dvl:Dvul_2889 glucose-1-phosphate cytidylyltransferase; glucose-1-phosphate cytidylyltransferase complement(1026130..1026894) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284553 YP_002479463.1 CDS Ddes_0878 NC_011883.1 1027082 1027768 D KEGG: bbr:BB0586 hypothetical protein; hypothetical protein 1027082..1027768 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284554 YP_002479464.1 CDS Ddes_0879 NC_011883.1 1027950 1029635 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: dvl:Dvul_0152 small GTP-binding protein; GTP-binding proten HflX complement(1027950..1029635) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284555 YP_002479465.1 CDS Ddes_0880 NC_011883.1 1029722 1030312 R PFAM: MGS domain protein; KEGG: dvu:DVU3235 IMP cyclohydrolase, putative; IMP cyclohydrolase complement(1029722..1030312) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284556 YP_002479466.1 CDS Ddes_0881 NC_011883.1 1030491 1031297 D KEGG: dvl:Dvul_0130 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 1030491..1031297 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284557 YP_002479467.1 CDS Ddes_0882 NC_011883.1 1031475 1032896 D PFAM: FAD linked oxidase domain protein; KEGG: dvu:DVU0827 glycolate oxidase, subunit GlcD, putative; FAD linked oxidase domain-containing protein 1031475..1032896 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284558 YP_002479468.1 CDS Ddes_0883 NC_011883.1 1032899 1034062 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvl:Dvul_2155 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; hypothetical protein 1032899..1034062 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284559 YP_002479469.1 CDS Ddes_0884 NC_011883.1 1034314 1034604 R hypothetical protein complement(1034314..1034604) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284560 YP_002479470.1 CDS Ddes_0885 NC_011883.1 1034618 1034761 D hypothetical protein 1034618..1034761 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284561 YP_002479471.1 CDS Ddes_0886 NC_011883.1 1034816 1035439 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_0116 TPR repeat-containing protein; hypothetical protein complement(1034816..1035439) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284562 YP_002479472.1 CDS Ddes_0887 NC_011883.1 1035436 1035828 R KEGG: dvl:Dvul_0115 hypothetical protein; hypothetical protein complement(1035436..1035828) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284563 YP_002479473.1 CDS Ddes_0888 NC_011883.1 1035974 1036645 R PFAM: protein of unknown function UPF0153; KEGG: dvl:Dvul_0114 hypothetical protein; hypothetical protein complement(1035974..1036645) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284564 YP_002479474.1 CDS Ddes_0889 NC_011883.1 1036947 1037135 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0113 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(1036947..1037135) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284565 YP_002479475.1 CDS Ddes_0890 NC_011883.1 1037354 1038796 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dvl:Dvul_0112 peptidase S1 and S6, chymotrypsin/Hap; 2-alkenal reductase complement(1037354..1038796) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284566 YP_002479476.1 CDS Ddes_0891 NC_011883.1 1038932 1040050 D KEGG: dvl:Dvul_0111 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1038932..1040050 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284567 YP_002479477.1 CDS Ddes_0892 NC_011883.1 1040143 1041129 D KEGG: dvl:Dvul_0110 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1040143..1041129 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284568 YP_002479478.1 CDS Ddes_0893 NC_011883.1 1041502 1042332 R KEGG: dvu:DVU2332 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(1041502..1042332) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284569 YP_002479479.1 CDS Ddes_0894 NC_011883.1 1042336 1042755 R PFAM: nucleoside diphosphate kinase; KEGG: dvl:Dvul_0925 nucleoside-diphosphate kinase; nucleoside-diphosphate kinase complement(1042336..1042755) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284570 YP_002479480.1 CDS Ddes_0895 NC_011883.1 1042956 1044428 R PFAM: protein of unknown function DUF610 YibQ; KEGG: dvl:Dvul_0924 protein of unknown function DUF610, YibQ; hypothetical protein complement(1042956..1044428) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284571 YP_002479481.1 CDS Ddes_0896 NC_011883.1 1044455 1045786 R KEGG: dvu:DVU2336 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(1044455..1045786) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284572 YP_002479482.1 CDS Ddes_0897 NC_011883.1 1046325 1046828 R PFAM: Rubrerythrin; KEGG: dvl:Dvul_0940 rubrerythrin; rubrerythrin complement(1046325..1046828) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284573 YP_002479483.1 CDS Ddes_0898 NC_011883.1 1047228 1047812 D PFAM: protein of unknown function DUF985; KEGG: gsu:GSU0173 hypothetical protein; hypothetical protein 1047228..1047812 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284574 YP_002479484.1 CDS Ddes_0899 NC_011883.1 1047809 1048444 D PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: dvl:Dvul_0944 hypothetical protein; hypothetical protein 1047809..1048444 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284575 YP_002479485.1 CDS Ddes_0900 NC_011883.1 1048647 1049801 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_2499 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit complement(1048647..1049801) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284576 YP_002479486.1 CDS Ddes_0901 NC_011883.1 1050140 1052056 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1050140..1052056 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284577 YP_002479487.1 CDS Ddes_0902 NC_011883.1 1052321 1053208 R KEGG: sfu:Sfum_3171 sugar kinase; sugar kinase complement(1052321..1053208) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284578 YP_002479488.1 CDS Ddes_0903 NC_011883.1 1053196 1053858 R KEGG: sfu:Sfum_3170 hypothetical protein; hypothetical protein complement(1053196..1053858) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284579 YP_002479489.1 CDS Ddes_0904 NC_011883.1 1054168 1054383 R KEGG: pca:Pcar_0821 hypothetical protein; hypothetical protein complement(1054168..1054383) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284580 YP_002479490.1 CDS Ddes_0905 NC_011883.1 1054383 1055477 R KEGG: sfu:Sfum_3168 hypothetical protein; hypothetical protein complement(1054383..1055477) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284581 YP_002479491.1 CDS Ddes_0906 NC_011883.1 1055789 1056328 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(1055789..1056328) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284582 YP_002479492.1 CDS Ddes_0907 NC_011883.1 1056456 1056551 D KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein; HesB/YadR/YfhF-family protein 1056456..1056551 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284583 YP_002479493.1 CDS Ddes_0908 NC_011883.1 1056633 1056773 D KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein; HesB/YadR/YfhF-family protein 1056633..1056773 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284584 YP_002479494.1 CDS Ddes_0909 NC_011883.1 1056864 1057184 D PFAM: HesB/YadR/YfhF-family protein; KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein; HesB/YadR/YfhF-family protein 1056864..1057184 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284585 YP_002479495.1 CDS Ddes_0910 NC_011883.1 1057280 1060819 D KEGG: dvl:Dvul_1260 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 1057280..1060819 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284586 YP_002479496.1 CDS Ddes_0911 NC_011883.1 1060894 1062066 D KEGG: dvl:Dvul_1261 hypothetical protein; hypothetical protein 1060894..1062066 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284587 YP_002479497.1 CDS Ddes_0912 NC_011883.1 1062389 1063324 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dvl:Dvul_1262 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein 1062389..1063324 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284588 YP_002479498.1 CDS Ddes_0913 NC_011883.1 1063466 1064410 D KEGG: dvl:Dvul_1263 hypothetical protein; hypothetical protein 1063466..1064410 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284589 YP_002479499.1 CDS Ddes_0914 NC_011883.1 1064407 1065159 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: dvl:Dvul_1264 DNA repair protein RecO; DNA repair protein RecO 1064407..1065159 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284590 YP_002479500.1 CDS glyQ NC_011883.1 1065539 1066417 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1065539..1066417 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284591 YP_002479501.1 CDS Ddes_0916 NC_011883.1 1066422 1068506 D KEGG: dvu:DVU1897 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 1066422..1068506 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284592 YP_002479502.1 CDS rpsT NC_011883.1 1068804 1069073 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1068804..1069073 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284593 YP_002479503.1 CDS Ddes_0918 NC_011883.1 1069779 1071443 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rba:RB9570 hydrogenase-4 transcriptional activator; Fis family transcriptional regulator 1069779..1071443 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284595 YP_002479504.1 CDS Ddes_0919 NC_011883.1 1071551 1071781 R PFAM: Dissimilatory sulfite reductase D; KEGG: dvl:Dvul_2530 dissimilatory sulfite reductase B; dissimilatory sulfite reductase D complement(1071551..1071781) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284596 YP_002479505.1 CDS Ddes_0920 NC_011883.1 1072080 1073225 R KEGG: dvl:Dvul_2531 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type beta subunit complement(1072080..1073225) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284597 YP_002479506.1 CDS Ddes_0921 NC_011883.1 1073244 1074557 R KEGG: dvl:Dvul_2532 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit complement(1073244..1074557) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284598 YP_002479507.1 CDS Ddes_0922 NC_011883.1 1075355 1077937 D KEGG: gur:Gura_0826 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases; CRISPR-associated helicase Cas3 1075355..1077937 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284599 YP_002479508.1 CDS Ddes_0923 NC_011883.1 1077940 1079562 D TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1; KEGG: gur:Gura_0827 CRISPR-associated CSE1 family protein; Cse1 family CRISPR-associated protein 1077940..1079562 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284600 YP_002479509.1 CDS Ddes_0924 NC_011883.1 1079559 1080110 D TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2; KEGG: gur:Gura_0828 hypothetical protein; Cse2 family CRISPR-associated protein 1079559..1080110 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284601 YP_002479510.1 CDS Ddes_0925 NC_011883.1 1080107 1080730 D TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: gur:Gura_0829 CRISPR-associated CSE3 family protein; Cse3 family CRISPR-associated protein 1080107..1080730 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284602 YP_002479511.1 CDS Ddes_0926 NC_011883.1 1080761 1081813 D TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; KEGG: gur:Gura_0830 CRISPR-associated CSE4 family protein; Cse4 family CRISPR-associated protein 1080761..1081813 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284603 YP_002479512.1 CDS Ddes_0927 NC_011883.1 1081803 1082552 D TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: gur:Gura_0831 CRISPR-associated Cas5 family protein; CRISPR-associated protein Cas5 family 1081803..1082552 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284604 YP_002479513.1 CDS Ddes_0928 NC_011883.1 1082536 1083447 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: pmy:Pmen_3755 CRISPR-associated Cas1 family protein; CRISPR-associated protein Cas1 1082536..1083447 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284605 YP_002479514.1 CDS Ddes_0929 NC_011883.1 1083428 1083736 D TIGRFAM: CRISPR-associated protein Cas2; KEGG: mhu:Mhun_1374 hypothetical protein; CRISPR-associated protein Cas2 1083428..1083736 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284606 YP_002479515.1 CDS Ddes_0930 NC_011883.1 1086395 1087504 D PFAM: conserved hypothetical protein; KEGG: dvl:Dvul_2400 hypothetical protein; hypothetical protein 1086395..1087504 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284609 YP_002479516.1 CDS Ddes_0931 NC_011883.1 1087521 1087916 D KEGG: dvl:Dvul_2399 hypothetical protein; hypothetical protein 1087521..1087916 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284610 YP_002479517.1 CDS Ddes_0932 NC_011883.1 1087916 1088365 D KEGG: dvl:Dvul_2398 hypothetical protein; hypothetical protein 1087916..1088365 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284611 YP_002479518.1 CDS Ddes_0933 NC_011883.1 1088619 1089509 R PFAM: formate/nitrite transporter; KEGG: pmr:PMI0706 probable formate transporter; formate/nitrite transporter complement(1088619..1089509) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284612 YP_002479519.1 CDS Ddes_0934 NC_011883.1 1090110 1090403 R KEGG: hypothetical protein; hypothetical protein complement(1090110..1090403) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284613 YP_002479520.1 CDS Ddes_0935 NC_011883.1 1090443 1090697 D hypothetical protein 1090443..1090697 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284614 YP_002479521.1 CDS Ddes_0936 NC_011883.1 1090971 1091543 R KEGG: rru:Rru_A1249 kinase-like; kinase-like protein complement(1090971..1091543) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284615 YP_002479522.1 CDS Ddes_0937 NC_011883.1 1091849 1092112 R KEGG: pst:PSPTO_1100 phage integrase family site specific recombinase; hypothetical protein complement(1091849..1092112) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284616 YP_002479523.1 CDS Ddes_0938 NC_011883.1 1092438 1093493 D PFAM: Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; KEGG: dvl:Dvul_0572 hypothetical protein; hypothetical protein 1092438..1093493 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284618 YP_002479524.1 CDS Ddes_0939 NC_011883.1 1093579 1094877 D KEGG: dvl:Dvul_0571 phenylacetate--CoA ligase; phenylacetate--CoA ligase 1093579..1094877 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284619 YP_002479525.1 CDS Ddes_0940 NC_011883.1 1094891 1095493 D PFAM: protein of unknown function DUF456; KEGG: dvl:Dvul_0570 hypothetical protein; hypothetical protein 1094891..1095493 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284620 YP_002479526.1 CDS Ddes_0941 NC_011883.1 1095495 1096247 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvl:Dvul_0569 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1095495..1096247 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284621 YP_002479527.1 CDS Ddes_0942 NC_011883.1 1096777 1098807 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dvl:Dvul_1674 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1096777..1098807 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284622 YP_002479528.1 CDS Ddes_0943 NC_011883.1 1099092 1099358 D PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU2011 ISD1, transposase OrfA; transposase IS3/IS911 family protein 1099092..1099358 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284623 YP_002479529.1 CDS Ddes_0944 NC_011883.1 1099415 1100203 D PFAM: Integrase catalytic region; KEGG: dvl:Dvul_2602 integrase catalytic subunit; integrase catalytic subunit 1099415..1100203 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284624 YP_002479530.1 CDS Ddes_0945 NC_011883.1 1100742 1102769 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dvl:Dvul_1674 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1100742..1102769 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284625 YP_002479531.1 CDS Ddes_0946 NC_011883.1 1103026 1104129 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1103026..1104129) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284626 YP_002479532.1 CDS Ddes_0947 NC_011883.1 1104382 1104996 R KEGG: dvl:Dvul_1731 hypothetical protein; hypothetical protein complement(1104382..1104996) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284627 YP_002479533.1 CDS Ddes_0948 NC_011883.1 1105007 1105357 R hypothetical protein complement(1105007..1105357) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284628 YP_002479534.1 CDS Ddes_0949 NC_011883.1 1105373 1106077 R KEGG: dvl:Dvul_1729 putative lipoprotein; hypothetical protein complement(1105373..1106077) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284629 YP_002479535.1 CDS ispG NC_011883.1 1106304 1107374 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1106304..1107374 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284630 YP_002479536.1 CDS Ddes_0951 NC_011883.1 1107374 1109098 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1107374..1109098 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284631 YP_002479537.1 CDS Ddes_0952 NC_011883.1 1109492 1110982 D KEGG: dvu:DVU1346 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1109492..1110982 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284632 YP_002479538.1 CDS Ddes_0953 NC_011883.1 1110979 1111989 D PFAM: Peptidase M23; KEGG: dvl:Dvul_1721 peptidase M23B; peptidase M23 1110979..1111989 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284633 YP_002479539.1 CDS Ddes_0954 NC_011883.1 1111995 1112267 D PFAM: Exonuclease VII small subunit; KEGG: dvl:Dvul_1720 exonuclease VII, small subunit; Exonuclease VII small subunit 1111995..1112267 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284634 YP_002479540.1 CDS Ddes_0955 NC_011883.1 1112280 1113176 D PFAM: Polyprenyl synthetase; KEGG: dvl:Dvul_1719 polyprenyl synthetase; polyprenyl synthetase 1112280..1113176 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284635 YP_002479541.1 CDS Ddes_0956 NC_011883.1 1113247 1115181 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1113247..1115181 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284636 YP_002479542.1 CDS Ddes_0957 NC_011883.1 1116118 1117251 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dvl:Dvul_1620 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase complement(1116118..1117251) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284637 YP_002479543.1 CDS Ddes_0958 NC_011883.1 1118069 1118404 R KEGG: dvl:Dvul_1619 hypothetical protein; hypothetical protein complement(1118069..1118404) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284638 YP_002479544.1 CDS hemA NC_011883.1 1118404 1119696 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1118404..1119696) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284639 YP_002479545.1 CDS Ddes_0960 NC_011883.1 1119711 1120538 R PFAM: cytochrome c assembly protein; KEGG: dvl:Dvul_1617 cytochrome c assembly protein; cytochrome c assembly protein complement(1119711..1120538) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284640 YP_002479546.1 CDS Ddes_0961 NC_011883.1 1120525 1121229 R TIGRFAM: siroheme synthase; KEGG: dvu:DVU1463 siroheme synthase; siroheme synthase complement(1120525..1121229) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284641 YP_002479547.1 CDS Ddes_0962 NC_011883.1 1121435 1122724 D KEGG: dvu:DVU1464 heptosyltransferase family protein; heptosyltransferase family protein 1121435..1122724 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284642 YP_002479548.1 CDS Ddes_0963 NC_011883.1 1122741 1124084 D KEGG: dvl:Dvul_1614 hypothetical protein; hypothetical protein 1122741..1124084 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284643 YP_002479549.1 CDS Ddes_0964 NC_011883.1 1124297 1125481 R KEGG: dvl:Dvul_1157 hypothetical protein; hypothetical protein complement(1124297..1125481) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284644 YP_002479550.1 CDS Ddes_0965 NC_011883.1 1125679 1127142 D TIGRFAM: tol-pal system protein YbgF; KEGG: dvl:Dvul_1158 TPR repeat-containing protein; tol-pal system protein YbgF 1125679..1127142 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284645 YP_002479551.1 CDS Ddes_0966 NC_011883.1 1127144 1128472 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dvl:Dvul_1159 DNA protecting protein DprA; DNA protecting protein DprA 1127144..1128472 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284646 YP_002479552.1 CDS Ddes_0967 NC_011883.1 1128469 1129590 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lip:LI0111 site-specific recombinase XerC; integrase family protein 1128469..1129590 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284647 YP_002479553.1 CDS Ddes_0968 NC_011883.1 1129776 1130693 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 1129776..1130693 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284648 YP_002479554.1 CDS Ddes_0969 NC_011883.1 1130895 1131341 R KEGG: dvl:Dvul_1499 hypothetical protein; hypothetical protein complement(1130895..1131341) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284649 YP_002479555.1 CDS Ddes_0970 NC_011883.1 1131573 1132031 R PFAM: PTS system sorbose subfamily IIB component; KEGG: dvl:Dvul_1500 PTS system sorbose subfamily IIB component; PTS system sorbose subfamily transporter subunit IIB complement(1131573..1132031) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284650 YP_002479556.1 CDS Ddes_0971 NC_011883.1 1132033 1132476 R PFAM: PTS system fructose subfamily IIA component; KEGG: dvl:Dvul_1501 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA complement(1132033..1132476) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284651 YP_002479557.1 CDS Ddes_0972 NC_011883.1 1132511 1133443 R PFAM: conserved hypothetical protein; KEGG: dvl:Dvul_1502 hypothetical protein; hypothetical protein complement(1132511..1133443) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284652 YP_002479558.1 CDS Ddes_0973 NC_011883.1 1133510 1134049 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dvl:Dvul_1504 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA complement(1133510..1134049) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284653 YP_002479559.1 CDS Ddes_0974 NC_011883.1 1134210 1135634 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: dvl:Dvul_1505 RNA polymerase, sigma 54 subunit, RpoN; RNA polymerase sigma-54 subunit RpoN complement(1134210..1135634) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284654 YP_002479560.1 CDS pyrG NC_011883.1 1135941 1137584 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1135941..1137584) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284655 YP_002479561.1 CDS Ddes_0976 NC_011883.1 1137845 1138654 D KEGG: dvl:Dvul_1512 phosphoribosylformylglycinamidine synthase I; phosphoribosylformylglycinamidine synthase 1137845..1138654 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284656 YP_002479562.1 CDS Ddes_0977 NC_011883.1 1138901 1140043 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: dvl:Dvul_1164 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(1138901..1140043) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284657 YP_002479563.1 CDS Ddes_0978 NC_011883.1 1140205 1143207 R KEGG: dvl:Dvul_1165 hypothetical protein; hypothetical protein complement(1140205..1143207) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284658 YP_002479564.1 CDS Ddes_0979 NC_011883.1 1143200 1146721 R PFAM: UvrD/REP helicase; KEGG: dvu:DVU2062 ATP-dependent DNA helicase UvrD; UvrD/REP helicase complement(1143200..1146721) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284659 YP_002479565.1 CDS Ddes_0980 NC_011883.1 1146946 1147899 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pap:PSPA7_1904 RhaT protein; hypothetical protein complement(1146946..1147899) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284660 YP_002479566.1 CDS Ddes_0981 NC_011883.1 1148138 1148560 D KEGG: dvl:Dvul_0935 hypothetical protein; hypothetical protein 1148138..1148560 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284661 YP_002479567.1 CDS Ddes_0982 NC_011883.1 1148739 1149164 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1148739..1149164 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284662 YP_002479568.1 CDS Ddes_0983 NC_011883.1 1149243 1150664 R PFAM: amino acid permease-associated region; KEGG: smt:Smal_0405 amino acid permease-associated region; amino acid permease-associated protein complement(1149243..1150664) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284663 YP_002479569.1 CDS Ddes_0984 NC_011883.1 1150856 1151389 R hypothetical protein complement(1150856..1151389) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284664 YP_002479570.1 CDS Ddes_0985 NC_011883.1 1151875 1152879 R PFAM: heat shock protein DnaJ domain protein; KEGG: dvu:DVU1003 DnaJ domain-containing protein; heat shock protein DnaJ domain-containing protein complement(1151875..1152879) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284665 YP_002479571.1 CDS Ddes_0986 NC_011883.1 1152883 1153332 R PFAM: protein of unknown function UPF0153; KEGG: dvl:Dvul_1987 hypothetical protein; hypothetical protein complement(1152883..1153332) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284666 YP_002479572.1 CDS Ddes_0987 NC_011883.1 1153336 1153767 R KEGG: dvl:Dvul_1988 CoA-binding domain-containing protein; CoA-binding domain-containing protein complement(1153336..1153767) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284667 YP_002479573.1 CDS Ddes_0988 NC_011883.1 1154343 1156373 R PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: dvu:DVU2302 glutathione-regulated potassium-efflux system protein KefB, putative; sodium/hydrogen exchanger complement(1154343..1156373) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284668 YP_002479574.1 CDS Ddes_0989 NC_011883.1 1156749 1157498 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pho:PH1235 ferrichrome transport ATP-binding protein; ABC transporter-like protein complement(1156749..1157498) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284669 YP_002479575.1 CDS Ddes_0990 NC_011883.1 1157491 1158627 R PFAM: transport system permease protein; KEGG: dol:Dole_1652 transport system permease protein; transport system permease complement(1157491..1158627) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284670 YP_002479576.1 CDS Ddes_0991 NC_011883.1 1158617 1159696 R PFAM: periplasmic binding protein; KEGG: pab:PAB0676 iron (III) ABC transporter, ATP-binding protein (hemv-3); periplasmic binding protein complement(1158617..1159696) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284671 YP_002479577.1 CDS Ddes_0992 NC_011883.1 1159681 1160448 R PFAM: Methyltransferase type 11; KEGG: ccv:CCV52592_0091 hypothetical protein; type 11 methyltransferase complement(1159681..1160448) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284672 YP_002479578.1 CDS Ddes_0993 NC_011883.1 1160436 1162643 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ppd:Ppro_1253 TonB-dependent receptor, plug; TonB-dependent receptor complement(1160436..1162643) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284673 YP_002479579.1 CDS Ddes_0994 NC_011883.1 1162771 1163307 R PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: det:DET1173 FwdE family protein; formylmethanofuran dehydrogenase subunit E complement(1162771..1163307) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284674 YP_002479580.1 CDS Ddes_0995 NC_011883.1 1163684 1164784 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mma:MM_2563 ferredoxin; 4Fe-4S ferredoxin complement(1163684..1164784) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284675 YP_002479581.1 CDS Ddes_0996 NC_011883.1 1164998 1165624 D TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: dvl:Dvul_1968 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 1164998..1165624 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284676 YP_002479582.1 CDS Ddes_0997 NC_011883.1 1165660 1166919 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: dvl:Dvul_1967 uracil-xanthine permease; uracil-xanthine permease 1165660..1166919 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284677 YP_002479583.1 CDS Ddes_0998 NC_011883.1 1167304 1167468 D hypothetical protein 1167304..1167468 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284678 YP_002479584.1 CDS Ddes_0999 NC_011883.1 1167594 1168463 R KEGG: dvl:Dvul_0609 putative lipoprotein; putative lipoprotein complement(1167594..1168463) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284679 YP_002479585.1 CDS Ddes_1000 NC_011883.1 1168485 1169699 D KEGG: smt:Smal_1211 secretion protein HlyD family protein; Multidrug resistance efflux pump-like protein 1168485..1169699 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284680 YP_002479586.1 CDS Ddes_1001 NC_011883.1 1170018 1171760 R PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_1028 hypothetical protein; hypothetical protein complement(1170018..1171760) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284681 YP_002479587.1 CDS Ddes_1002 NC_011883.1 1171757 1172479 R PFAM: methyltransferase small; KEGG: dvl:Dvul_1029 methyltransferase small; methyltransferase small complement(1171757..1172479) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284682 YP_002479588.1 CDS Ddes_1003 NC_011883.1 1172656 1172799 R hypothetical protein complement(1172656..1172799) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284683 YP_002479589.1 CDS Ddes_1004 NC_011883.1 1172855 1173703 D PFAM: ribosomal L11 methyltransferase; KEGG: dvl:Dvul_0920 ribosomal L11 methyltransferase; ribosomal L11 methyltransferase 1172855..1173703 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284684 YP_002479590.1 CDS Ddes_1005 NC_011883.1 1173719 1174072 D hypothetical protein 1173719..1174072 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284685 YP_002479591.1 CDS Ddes_1006 NC_011883.1 1174283 1175095 R PFAM: Peptidase M23; KEGG: cya:CYA_1895 M23B family peptidase; peptidase M23 complement(1174283..1175095) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284686 YP_002479592.1 CDS Ddes_1007 NC_011883.1 1175327 1176187 D PFAM: Pirin domain protein; KEGG: lip:LI0289 pirin-related protein; Pirin domain-containing protein 1175327..1176187 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284687 YP_002479593.1 CDS Ddes_1008 NC_011883.1 1176362 1177438 D PFAM: periplasmic solute binding protein; KEGG: cyb:CYB_0144 putative zinc ABC transporter, periplasmic zinc-binding protein; periplasmic solute binding protein 1176362..1177438 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284688 YP_002479594.1 CDS Ddes_1009 NC_011883.1 1177425 1178351 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmy:Pmen_4497 ABC transporter related; ABC transporter-like protein 1177425..1178351 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284689 YP_002479595.1 CDS Ddes_1010 NC_011883.1 1178344 1179210 D PFAM: ABC-3 protein; KEGG: cpy:Cphy_3489 ABC-3 protein; ABC-3 protein 1178344..1179210 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284690 YP_002479596.1 CDS Ddes_1011 NC_011883.1 1179297 1179800 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dvl:Dvul_1832 redoxin domain-containing protein; redoxin domain-containing protein complement(1179297..1179800) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284691 YP_002479597.1 CDS hslU NC_011883.1 1180342 1181655 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1180342..1181655 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284692 YP_002479598.1 CDS Ddes_1013 NC_011883.1 1182490 1184928 D PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: afw:Anae109_1408 glycosyl transferase family protein; group 1 glycosyl transferase 1182490..1184928 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284693 YP_002479599.1 CDS Ddes_1014 NC_011883.1 1184954 1188421 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_4738 methyltransferase type 11; type 11 methyltransferase 1184954..1188421 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284694 YP_002479600.1 CDS Ddes_1015 NC_011883.1 1188433 1189551 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: bpy:Bphyt_0888 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 1188433..1189551 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284695 YP_002479601.1 CDS Ddes_1016 NC_011883.1 1189611 1190558 D PFAM: LicD family protein; KEGG: cpf:CPF_0917 LicD family protein; LicD family protein 1189611..1190558 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284696 YP_002479602.1 CDS Ddes_1017 NC_011883.1 1190760 1191374 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hhe:HH0078 phosphoserine phosphatase; HAD-superfamily hydrolase 1190760..1191374 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284697 YP_002479603.1 CDS Ddes_1018 NC_011883.1 1191332 1191970 D KEGG: hhe:HH0077 hypothetical protein; hypothetical protein 1191332..1191970 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284698 YP_002479604.1 CDS Ddes_1019 NC_011883.1 1191973 1192608 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hhe:HH0074 hypothetical protein; type 12 methyltransferase complement(1191973..1192608) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284699 YP_002479605.1 CDS Ddes_1020 NC_011883.1 1192598 1193314 R TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: hhe:HH0075 aspartate racemase; aspartate racemase complement(1192598..1193314) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284700 YP_002479606.1 CDS Ddes_1021 NC_011883.1 1194518 1196533 D PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dvl:Dvul_1990 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein transmembrane subunit 1194518..1196533 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284702 YP_002479607.1 CDS Ddes_1022 NC_011883.1 1196668 1197144 D PFAM: CheW domain protein; KEGG: dvl:Dvul_1259 putative CheW protein; CheW protein 1196668..1197144 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284703 YP_002479608.1 CDS Ddes_1023 NC_011883.1 1197683 1198201 D PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_1065 acetyltransferase; N-acetyltransferase GCN5 1197683..1198201 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284704 YP_002479609.1 CDS Ddes_1024 NC_011883.1 1198176 1198406 R KEGG: dvl:Dvul_1258 hypothetical protein; hypothetical protein complement(1198176..1198406) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284705 YP_002479610.1 CDS Ddes_1025 NC_011883.1 1198486 1201254 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU1432 radical SAM domain-containing protein; radical SAM protein complement(1198486..1201254) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284706 YP_002479611.1 CDS Ddes_1026 NC_011883.1 1201659 1202000 R KEGG: dvl:Dvul_1643 hypothetical protein; hypothetical protein complement(1201659..1202000) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284707 YP_002479612.1 CDS rnc NC_011883.1 1202102 1202833 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1202102..1202833 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284708 YP_002479613.1 CDS Ddes_1028 NC_011883.1 1203007 1203915 R PFAM: flagellin domain protein; KEGG: dvl:Dvul_0790 flagellin domain-containing protein; flagellin domain-containing protein complement(1203007..1203915) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284709 YP_002479614.1 CDS Ddes_1029 NC_011883.1 1204338 1205972 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_2048 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1204338..1205972) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284710 YP_002479615.1 CDS nikC NC_011883.1 1205974 1206786 R with NikABDE is involved in nickel transport into the cell; nickel transporter permease NikC complement(1205974..1206786) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284711 YP_002479616.1 CDS Ddes_1031 NC_011883.1 1206783 1207721 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_03851 nickel transport protein (ABC superfamily, membrane); binding-protein-dependent transport system inner membrane protein complement(1206783..1207721) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284712 YP_002479617.1 CDS Ddes_1032 NC_011883.1 1207870 1209504 R KEGG: rru:Rru_A2277 nickel ABC transporter, periplasmic nickel-binding; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; nickel ABC transporter substrate-binding protein complement(1207870..1209504) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284713 YP_002479618.1 CDS Ddes_1033 NC_011883.1 1210401 1211843 D PFAM: conserved hypothetical protein; KEGG: drm:Dred_1452 hypothetical protein; hypothetical protein 1210401..1211843 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284714 YP_002479619.1 CDS Ddes_1034 NC_011883.1 1211861 1212025 D KEGG: tye:THEYE_A0243 hypothetical protein; hypothetical protein 1211861..1212025 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284715 YP_002479620.1 CDS Ddes_1035 NC_011883.1 1212104 1212328 D hypothetical protein 1212104..1212328 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284716 YP_002479621.1 CDS Ddes_1036 NC_011883.1 1212334 1212768 D PFAM: protein of unknown function DUF523; KEGG: dvl:Dvul_2924 hypothetical protein; hypothetical protein 1212334..1212768 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284717 YP_002479622.1 CDS Ddes_1037 NC_011883.1 1213288 1213773 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dvl:Dvul_1244 hydrogenase expression/formation protein; hydrogenase expression/formation protein complement(1213288..1213773) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284718 YP_002479623.1 CDS Ddes_1038 NC_011883.1 1213853 1215529 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: dvl:Dvul_1245 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit complement(1213853..1215529) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284719 YP_002479624.1 CDS Ddes_1039 NC_011883.1 1215541 1216488 R KEGG: dvl:Dvul_1246 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA complement(1215541..1216488) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284720 YP_002479625.1 CDS Ddes_1040 NC_011883.1 1216949 1218295 D KEGG: cbt:CLH_0332 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 1216949..1218295 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284721 YP_002479626.1 CDS Ddes_1041 NC_011883.1 1218492 1219268 R PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: dvu:DVU2655 D-alanyl-D-alanine carboxypeptidase family protein; serine-type D-Ala-D-Ala carboxypeptidase complement(1218492..1219268) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284722 YP_002479627.1 CDS Ddes_1042 NC_011883.1 1219506 1220612 R PFAM: protein of unknown function UPF0118; KEGG: lip:LI0472 permease; hypothetical protein complement(1219506..1220612) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284723 YP_002479628.1 CDS Ddes_1043 NC_011883.1 1221201 1224230 D PFAM: glycosyl transferase family 2; KEGG: met:M446_0315 glycosyl transferase family protein; family 2 glycosyl transferase 1221201..1224230 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284724 YP_002479629.1 CDS greA NC_011883.1 1224388 1224876 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1224388..1224876) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284725 YP_002479630.1 CDS Ddes_1045 NC_011883.1 1225333 1226886 D KEGG: dvl:Dvul_1685 hypothetical protein; hypothetical protein 1225333..1226886 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284726 YP_002479631.1 CDS Ddes_1046 NC_011883.1 1227119 1227790 R PFAM: surface antigen msp4 family protein; KEGG: seh:SeHA_C4728 heat resistant agglutinin 1; surface antigen msp4 family protein complement(1227119..1227790) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284727 YP_002479632.1 CDS Ddes_1047 NC_011883.1 1228769 1228909 R hypothetical protein complement(1228769..1228909) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284729 YP_002479633.1 CDS Ddes_1048 NC_011883.1 1228920 1229690 R KEGG: dvl:Dvul_2180 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1228920..1229690) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284730 YP_002479634.1 CDS Ddes_1049 NC_011883.1 1229776 1229922 D hypothetical protein 1229776..1229922 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284731 YP_002479635.1 CDS Ddes_1050 NC_011883.1 1230033 1230914 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1230033..1230914) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284732 YP_002479636.1 CDS hisD NC_011883.1 1230940 1232244 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(1230940..1232244) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284733 YP_002479637.1 CDS Ddes_1052 NC_011883.1 1232624 1233883 R hypothetical protein complement(1232624..1233883) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284734 YP_002479638.1 CDS Ddes_1053 NC_011883.1 1234220 1234843 D PFAM: GrpE protein; KEGG: dvl:Dvul_2165 GrpE protein; GrpE protein HSP-70 cofactor 1234220..1234843 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284735 YP_002479639.1 CDS Ddes_1054 NC_011883.1 1234987 1236066 R PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mgm:Mmc1_3072 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase complement(1234987..1236066) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284736 YP_002479640.1 CDS Ddes_1055 NC_011883.1 1236063 1236659 R PFAM: protein of unknown function DUF330; KEGG: sfu:Sfum_2417 protein of unknown function DUF330; hypothetical protein complement(1236063..1236659) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284737 YP_002479641.1 CDS Ddes_1056 NC_011883.1 1236659 1237627 R PFAM: Mammalian cell entry related domain protein; KEGG: gur:Gura_2635 hypothetical protein; mammalian cell entry domain-containing protein complement(1236659..1237627) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284738 YP_002479642.1 CDS Ddes_1057 NC_011883.1 1237624 1238520 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2415 ABC transporter related; ABC transporter-like protein complement(1237624..1238520) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284739 YP_002479643.1 CDS Ddes_1058 NC_011883.1 1238606 1239733 R PFAM: protein of unknown function DUF140; KEGG: lip:LI1047 ABC-type transport system involved in resistance to organic solvents, permease component; hypothetical protein complement(1238606..1239733) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284740 YP_002479644.1 CDS Ddes_1059 NC_011883.1 1239824 1242589 D KEGG: lip:LI0102 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 1239824..1242589 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284741 YP_002479645.1 CDS Ddes_1060 NC_011883.1 1242745 1243587 R hypothetical protein complement(1242745..1243587) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284742 YP_002479646.1 CDS Ddes_1061 NC_011883.1 1243770 1245011 R KEGG: dvl:Dvul_0727 hypothetical protein; hypothetical protein complement(1243770..1245011) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284743 YP_002479647.1 CDS rplM NC_011883.1 1245274 1245708 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1245274..1245708 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284744 YP_002479648.1 CDS rpsI NC_011883.1 1245722 1246114 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1245722..1246114 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284745 YP_002479649.1 CDS Ddes_1064 NC_011883.1 1246294 1248108 D PFAM: protein of unknown function DUF181; KEGG: dvl:Dvul_1835 hypothetical protein; hypothetical protein 1246294..1248108 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284746 YP_002479650.1 CDS Ddes_1065 NC_011883.1 1248228 1249373 D PFAM: Extracellular ligand-binding receptor; KEGG: lip:LI0496 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 1248228..1249373 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284747 YP_002479651.1 CDS Ddes_1066 NC_011883.1 1249505 1250398 D PFAM: inner-membrane translocator; KEGG: lip:LI0497 branched chain amino acid ABC transporter, permease protein; inner-membrane translocator 1249505..1250398 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284748 YP_002479652.1 CDS Ddes_1067 NC_011883.1 1250398 1251438 D PFAM: inner-membrane translocator; KEGG: lip:LI0498 branched chain amino acid ABC transporter, permease protein; inner-membrane translocator 1250398..1251438 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284749 YP_002479653.1 CDS Ddes_1068 NC_011883.1 1251435 1252256 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lip:LI0499 branched chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 1251435..1252256 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284750 YP_002479654.1 CDS Ddes_1069 NC_011883.1 1252311 1253033 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lip:LI0500 branched chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 1252311..1253033 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284751 YP_002479655.1 CDS Ddes_1070 NC_011883.1 1253230 1255866 D PFAM: peptidase M16 domain protein; KEGG: dvl:Dvul_1646 peptidase M16 domain-containing protein; peptidase M16 domain-containing protein 1253230..1255866 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284752 YP_002479656.1 CDS Ddes_1071 NC_011883.1 1256611 1256727 D hypothetical protein 1256611..1256727 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284753 YP_002479657.1 CDS Ddes_1073 NC_011883.1 1259461 1259976 D TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: ENSAPMG00000014641; . ; K04068 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 1259461..1259976 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284755 YP_002479658.1 CDS Ddes_1074 NC_011883.1 1260276 1261358 R TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pca:Pcar_0508 hemerythrin; hemerythrin-like metal-binding protein complement(1260276..1261358) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284756 YP_002479659.1 CDS Ddes_1075 NC_011883.1 1261595 1262749 R TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvu:DVU0664 cysteine desulfurase; cysteine desulfurase NifS complement(1261595..1262749) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284757 YP_002479660.1 CDS Ddes_1076 NC_011883.1 1262754 1263590 R TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dvl:Dvul_2295 Fe-S cluster assembly protein NifU; Fe-S cluster assembly protein NifU complement(1262754..1263590) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284758 YP_002479661.1 CDS Ddes_1077 NC_011883.1 1263574 1264017 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ttj:TTHA0455 rrf2 family protein, transcriptional regulator; BadM/Rrf2 family transcriptional regulator complement(1263574..1264017) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284759 YP_002479662.1 CDS Ddes_1078 NC_011883.1 1264052 1264996 R PFAM: homoserine O-succinyltransferase; KEGG: afl:Aflv_1464 homoserine O-succinyltransferase; Homoserine O-succinyltransferase complement(1264052..1264996) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284760 YP_002479663.1 CDS Ddes_1079 NC_011883.1 1265188 1265910 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0703 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(1265188..1265910) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284761 YP_002479664.1 CDS Ddes_1080 NC_011883.1 1265913 1266569 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hmo:HM1_1613 phosphoglycolate phosphatase, putative; HAD-superfamily hydrolase complement(1265913..1266569) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284762 YP_002479665.1 CDS Ddes_1081 NC_011883.1 1266840 1267733 D PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: dvl:Dvul_1899 ornithine carbamoyltransferase; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region 1266840..1267733 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284763 YP_002479666.1 CDS Ddes_1082 NC_011883.1 1268214 1268780 R hypothetical protein complement(1268214..1268780) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284764 YP_002479667.1 CDS Ddes_1083 NC_011883.1 1268762 1269538 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: xau:Xaut_1874 ExsB protein; exsB protein complement(1268762..1269538) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284765 YP_002479668.1 CDS Ddes_1084 NC_011883.1 1269535 1270536 R PFAM: nuclease (SNase domain protein); KEGG: dvl:Dvul_1371 nuclease; nuclease complement(1269535..1270536) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284766 YP_002479669.1 CDS Ddes_1085 NC_011883.1 1270700 1272469 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: dvl:Dvul_1370 RpoD family RNA polymerase sigma factor; RpoD subfamily RNA polymerase sigma-70 subunit complement(1270700..1272469) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284767 YP_002479670.1 CDS Ddes_1086 NC_011883.1 1272456 1274198 R KEGG: dvl:Dvul_1369 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(1272456..1274198) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284768 YP_002479671.1 CDS Ddes_1087 NC_011883.1 1274486 1276939 R PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: dvu:DVU1790 MutS2 family protein; Smr protein/MutS2 complement(1274486..1276939) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284769 YP_002479672.1 CDS Ddes_1088 NC_011883.1 1277214 1277750 R KEGG: dvl:Dvul_1367 GatB/YqeY domain-containing protein; GatB/YqeY domain-containing protein complement(1277214..1277750) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284770 YP_002479673.1 CDS rpsU NC_011883.1 1277795 1277998 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1277795..1277998) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284771 YP_002479674.1 CDS Ddes_1090 NC_011883.1 1278342 1278614 R PFAM: histone family protein DNA-binding protein; KEGG: dvl:Dvul_1364 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(1278342..1278614) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284772 YP_002479675.1 CDS ksgA NC_011883.1 1278725 1279564 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1278725..1279564) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284773 YP_002479676.1 CDS Ddes_1092 NC_011883.1 1279571 1281622 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1279571..1281622) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284774 YP_002479677.1 CDS Ddes_1093 NC_011883.1 1281644 1282675 R KEGG: dvl:Dvul_1360 hypothetical protein; hypothetical protein complement(1281644..1282675) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284775 YP_002479678.1 CDS Ddes_1094 NC_011883.1 1282689 1284089 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1282689..1284089) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284776 YP_002479679.1 CDS Ddes_1095 NC_011883.1 1284324 1285529 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(1284324..1285529) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284777 YP_002479680.1 CDS Ddes_1096 NC_011883.1 1285737 1288979 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: dvl:Dvul_2806 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit 1285737..1288979 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284778 YP_002479681.1 CDS Ddes_1097 NC_011883.1 1288982 1290112 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1288982..1290112 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284779 YP_002479682.1 CDS Ddes_1098 NC_011883.1 1290224 1290655 D KEGG: lip:LI0267 hypothetical protein; hypothetical protein 1290224..1290655 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284780 YP_002479683.1 CDS Ddes_1099 NC_011883.1 1290699 1290941 D KEGG: rme:Rmet_3472 hypothetical protein; hypothetical protein 1290699..1290941 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284781 YP_002479684.1 CDS Ddes_1101 NC_011883.1 1291943 1292731 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: drm:Dred_2228 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 1291943..1292731 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284783 YP_002479685.1 CDS Ddes_1102 NC_011883.1 1292919 1293962 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_0730 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1292919..1293962) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284784 YP_002479686.1 CDS Ddes_1103 NC_011883.1 1293966 1295384 R KEGG: dvl:Dvul_0731 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(1293966..1295384) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284785 YP_002479687.1 CDS Ddes_1104 NC_011883.1 1295773 1296219 D TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: dvl:Dvul_0732 cell division protein MraZ; MraZ protein 1295773..1296219 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284786 YP_002479688.1 CDS mraW NC_011883.1 1296229 1297212 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dvl:Dvul_0733 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 1296229..1297212 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284787 YP_002479689.1 CDS Ddes_1106 NC_011883.1 1297209 1297511 D KEGG: dvl:Dvul_0734 hypothetical protein; hypothetical protein 1297209..1297511 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284788 YP_002479690.1 CDS Ddes_1107 NC_011883.1 1297640 1299772 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: dvu:DVU2510 penicillin-binding protein; peptidoglycan glycosyltransferase 1297640..1299772 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284789 YP_002479691.1 CDS Ddes_1108 NC_011883.1 1300088 1301542 D TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dvu:DVU2509 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase 1300088..1301542 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284790 YP_002479692.1 CDS Ddes_1109 NC_011883.1 1301533 1302951 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dvl:Dvul_0737 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 1301533..1302951 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284791 YP_002479693.1 CDS mraY NC_011883.1 1303376 1304452 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1303376..1304452 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284792 YP_002479694.1 CDS Ddes_1111 NC_011883.1 1304464 1305768 D TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dvl:Dvul_0739 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 1304464..1305768 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284793 YP_002479695.1 CDS Ddes_1112 NC_011883.1 1305765 1306946 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dvl:Dvul_0740 cell division protein FtsW; cell division protein FtsW 1305765..1306946 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284794 YP_002479696.1 CDS murG NC_011883.1 1306925 1308001 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1306925..1308001 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284795 YP_002479697.1 CDS murC NC_011883.1 1308073 1309446 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1308073..1309446 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284796 YP_002479698.1 CDS Ddes_1115 NC_011883.1 1309439 1310329 D KEGG: dvu:DVU2502 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1309439..1310329 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284797 YP_002479699.1 CDS Ddes_1116 NC_011883.1 1310314 1311201 D PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dvl:Dvul_0744 polypeptide-transport-associated domain-containing protein; polypeptide-transport-associated domain-containing protein 1310314..1311201 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284798 YP_002479700.1 CDS Ddes_1117 NC_011883.1 1311253 1312488 D PFAM: cell division protein FtsA; KEGG: dvl:Dvul_0745 cell division protein FtsA; cell division protein FtsA 1311253..1312488 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284799 YP_002479701.1 CDS Ddes_1118 NC_011883.1 1312542 1313852 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1312542..1313852 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284800 YP_002479702.1 CDS Ddes_1119 NC_011883.1 1314624 1315547 D TIGRFAM: diaminopimelate dehydrogenase; KEGG: sth:STH1425 diaminopimelate dehydrogenase; diaminopimelate dehydrogenase 1314624..1315547 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284801 YP_002479703.1 CDS Ddes_1120 NC_011883.1 1315889 1316320 R PFAM: amino acid-binding ACT domain protein; KEGG: dvl:Dvul_1522 amino acid-binding ACT domain-containing protein; amino acid-binding ACT domain-containing protein complement(1315889..1316320) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284802 YP_002479704.1 CDS Ddes_1121 NC_011883.1 1316350 1316559 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dvl:Dvul_1701 twin arginine-targeting protein translocase; twin-arginine translocation protein, TatA/E family subunit complement(1316350..1316559) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284803 YP_002479705.1 CDS Ddes_1122 NC_011883.1 1316757 1325111 R KEGG: plt:Plut_0676 VCBS; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; SMART: Cadherin; outer membrane adhesin-like protein complement(1316757..1325111) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284804 YP_002479706.1 CDS Ddes_1123 NC_011883.1 1325376 1325525 R hypothetical protein complement(1325376..1325525) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284805 YP_002479707.1 CDS Ddes_1125 NC_011883.1 1325985 1326374 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: ppw:PputW619_2862 CrcB protein; CrcB protein 1325985..1326374 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284807 YP_002479708.1 CDS Ddes_1126 NC_011883.1 1326383 1326709 D KEGG: rfr:Rfer_1947 hypothetical protein; hypothetical protein 1326383..1326709 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284808 YP_002479709.1 CDS Ddes_1127 NC_011883.1 1327076 1328161 R KEGG: lip:LI0254 hypothetical protein; hypothetical protein complement(1327076..1328161) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284809 YP_002479710.1 CDS Ddes_1128 NC_011883.1 1328395 1329282 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dvl:Dvul_1705 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(1328395..1329282) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284810 YP_002479711.1 CDS Ddes_1129 NC_011883.1 1329446 1330228 D PFAM: anaerobic cobalt chelatase; KEGG: dvu:DVU1365 heme-binding protein, putative; anaerobic cobalt chelatase 1329446..1330228 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284811 YP_002479712.1 CDS Ddes_1130 NC_011883.1 1330237 1331076 D hypothetical protein 1330237..1331076 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284812 YP_002479713.1 CDS Ddes_1131 NC_011883.1 1331360 1332106 R TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: dvl:Dvul_0945 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(1331360..1332106) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284813 YP_002479714.1 CDS Ddes_1132 NC_011883.1 1332368 1333426 R KEGG: dvl:Dvul_1682 hypothetical protein; hypothetical protein complement(1332368..1333426) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284814 YP_002479715.1 CDS Ddes_1133 NC_011883.1 1333449 1334189 R KEGG: dvl:Dvul_0026 methyltransferase type 11; type 11 methyltransferase complement(1333449..1334189) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284815 YP_002479716.1 CDS Ddes_1134 NC_011883.1 1334378 1334758 R TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: drm:Dred_0614 putative endoribonuclease L-PSP; endoribonuclease L-PSP complement(1334378..1334758) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284816 YP_002479717.1 CDS Ddes_1135 NC_011883.1 1334770 1335999 R TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: dvu:DVU3297 tryptophan-specific transport protein; aromatic amino acid transporter complement(1334770..1335999) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284817 YP_002479718.1 CDS Ddes_1136 NC_011883.1 1335999 1337069 R PFAM: Bile acid:sodium symporter; KEGG: bcl:ABC1222 sodium:bile acid symporter; bile acid:sodium symporter complement(1335999..1337069) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284818 YP_002479719.1 CDS Ddes_1137 NC_011883.1 1337226 1338908 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1337226..1338908 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284819 YP_002479720.1 CDS Ddes_1138 NC_011883.1 1338965 1340575 D KEGG: lip:LI0629 hypothetical protein; hypothetical protein 1338965..1340575 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284820 YP_002479721.1 CDS Ddes_1139 NC_011883.1 1340677 1341330 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cdf:CD3605 putative phosphatase; HAD-superfamily hydrolase 1340677..1341330 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284821 YP_002479722.1 CDS Ddes_1140 NC_011883.1 1341670 1342857 R KEGG: dvl:Dvul_2450 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(1341670..1342857) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284822 YP_002479723.1 CDS Ddes_1141 NC_011883.1 1342929 1344164 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(1342929..1344164) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284823 YP_002479724.1 CDS Ddes_1142 NC_011883.1 1344224 1344709 R PFAM: protein of unknown function UPF0079; KEGG: dvl:Dvul_1252 hypothetical protein; hypothetical protein complement(1344224..1344709) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284824 YP_002479725.1 CDS Ddes_1143 NC_011883.1 1344697 1346358 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: lip:LI0750 hypothetical protein; carbohydrate kinase complement(1344697..1346358) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284825 YP_002479726.1 CDS acpS NC_011883.1 1346358 1346732 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(1346358..1346732) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284826 YP_002479727.1 CDS Ddes_1145 NC_011883.1 1346906 1348240 D KEGG: dvl:Dvul_1257 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1346906..1348240 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284827 YP_002479728.1 CDS Ddes_1146 NC_011883.1 1348605 1350173 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pvi:Cvib_1342 NifA subfamily transcriptional regulator; Fis family transcriptional regulator 1348605..1350173 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284828 YP_002479729.1 CDS Ddes_1147 NC_011883.1 1350932 1352137 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dvu:DVU1231 ammonium transporter; ammonium transporter 1350932..1352137 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284829 YP_002479730.1 CDS Ddes_1148 NC_011883.1 1352156 1352494 D PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_1291 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1352156..1352494 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284830 YP_002479731.1 CDS Ddes_1149 NC_011883.1 1352550 1354742 D PFAM: glutamine synthetase catalytic region; KEGG: tte:TTE0821 glutamine synthase; glutamine synthetase 1352550..1354742 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284831 YP_002479732.1 CDS Ddes_1150 NC_011883.1 1355089 1355952 D PFAM: diaminopimelate epimerase; KEGG: cth:Cthe_3100 diaminopimelate epimerase; diaminopimelate epimerase 1355089..1355952 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284832 YP_002479733.1 CDS Ddes_1151 NC_011883.1 1355973 1357199 D PFAM: aminotransferase class I and II; KEGG: emi:Emin_1014 aminotransferase class I and II; class I and II aminotransferase 1355973..1357199 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284833 YP_002479734.1 CDS Ddes_1152 NC_011883.1 1357640 1358989 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1357640..1358989) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284834 YP_002479735.1 CDS Ddes_1153 NC_011883.1 1359516 1360508 D PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dvl:Dvul_1975 hypothetical protein; transglutaminase 1359516..1360508 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284835 YP_002479736.1 CDS Ddes_1154 NC_011883.1 1360517 1362637 D KEGG: dvl:Dvul_1974 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 1360517..1362637 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284836 YP_002479737.1 CDS Ddes_1155 NC_011883.1 1363153 1364259 D KEGG: pca:Pcar_2598 putative glutamate synthase, large subunit (domain 1); putative glutamate synthase, large subunit (domain 1) 1363153..1364259 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284837 YP_002479738.1 CDS Ddes_1156 NC_011883.1 1364247 1365872 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: ppd:Ppro_2160 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 1364247..1365872 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284838 YP_002479739.1 CDS Ddes_1157 NC_011883.1 1365895 1367040 D PFAM: glutamate synthase alpha subunit domain protein; KEGG: ppd:Ppro_2159 glutamate synthase alpha subunit; glutamate synthase subunit alpha domain-containing protein 1365895..1367040 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284839 YP_002479740.1 CDS Ddes_1158 NC_011883.1 1367223 1367732 D PFAM: nitroreductase; KEGG: dvl:Dvul_0809 nitroreductase; nitroreductase 1367223..1367732 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284840 YP_002479741.1 CDS Ddes_1159 NC_011883.1 1367999 1368706 R PFAM: HhH-GPD family protein; KEGG: cbb:CLD_0120 methylated-DNA--protein-cysteine methyltransferase; HhH-GPD family protein complement(1367999..1368706) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284841 YP_002479742.1 CDS Ddes_1160 NC_011883.1 1368684 1369184 R KEGG: aoe:Clos_0936 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase complement(1368684..1369184) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284842 YP_002479743.1 CDS Ddes_1161 NC_011883.1 1369264 1369836 R PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; KEGG: cbb:CLD_0121 methylphosphotriester-DNA alkyltransferase; AraC family transcriptional regulator complement(1369264..1369836) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284843 YP_002479744.1 CDS Ddes_1162 NC_011883.1 1369907 1371346 R PFAM: regulatory protein GntR HTH; KEGG: dvl:Dvul_0077 GntR family transcriptional regulator; GntR family transcriptional regulator complement(1369907..1371346) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284844 YP_002479745.1 CDS Ddes_1163 NC_011883.1 1371519 1371992 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: dvl:Dvul_0078 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 1371519..1371992 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284845 YP_002479746.1 CDS Ddes_1164 NC_011883.1 1372407 1372727 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: dps:DP0971 hypothetical protein; cupin 1372407..1372727 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284846 YP_002479747.1 CDS Ddes_1165 NC_011883.1 1372803 1374278 D PFAM: protein of unknown function DUF438; Hemerythrin HHE cation binding domain protein; Domain of unknown function DUF1858; KEGG: dvl:Dvul_0658 hemerythrin HHE cation binding domain-containing protein; hypothetical protein 1372803..1374278 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284847 YP_002479748.1 CDS Ddes_1166 NC_011883.1 1374502 1374783 D hypothetical protein 1374502..1374783 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284848 YP_002479749.1 CDS Ddes_1167 NC_011883.1 1374988 1375821 R PFAM: phospholipid/glycerol acyltransferase; KEGG: dvl:Dvul_1399 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1374988..1375821) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284849 YP_002479750.1 CDS Ddes_1168 NC_011883.1 1375824 1377047 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dvl:Dvul_1401 recombination factor protein RarA; recombination factor protein RarA complement(1375824..1377047) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284850 YP_002479751.1 CDS Ddes_1169 NC_011883.1 1377044 1377802 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1377044..1377802) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284851 YP_002479752.1 CDS Ddes_1170 NC_011883.1 1377799 1379517 R KEGG: dvl:Dvul_1404 hypothetical protein; hypothetical protein complement(1377799..1379517) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284852 YP_002479753.1 CDS Ddes_1171 NC_011883.1 1379636 1380826 D PFAM: GAF domain protein; KEGG: dvl:Dvul_1405 putative GAF sensor protein; putative GAF sensor protein 1379636..1380826 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284853 YP_002479754.1 CDS Ddes_1172 NC_011883.1 1380829 1381854 D TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dvl:Dvul_1406 cell shape determining protein MreB; rod shape-determining protein MreB 1380829..1381854 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284854 YP_002479755.1 CDS Ddes_1173 NC_011883.1 1382378 1383163 D PFAM: inositol monophosphatase; KEGG: dvu:DVU1680 inositol-1-monophosphatase; inositol-phosphate phosphatase 1382378..1383163 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284855 YP_002479756.1 CDS Ddes_1174 NC_011883.1 1383219 1383764 R KEGG: dvl:Dvul_1408 NUDIX hydrolase; NUDIX hydrolase complement(1383219..1383764) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284856 YP_002479757.1 CDS Ddes_1175 NC_011883.1 1383796 1384206 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dvl:Dvul_1409 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 1383796..1384206 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284857 YP_002479758.1 CDS Ddes_1176 NC_011883.1 1384224 1384991 D PFAM: triosephosphate isomerase; KEGG: dvl:Dvul_1410 triose-phosphate isomerase; Triose-phosphate isomerase 1384224..1384991 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284858 YP_002479759.1 CDS secG NC_011883.1 1384991 1385428 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dvl:Dvul_1411 preprotein translocase subunit SecG; preprotein translocase subunit SecG 1384991..1385428 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284859 YP_002479760.1 CDS Ddes_1178 NC_011883.1 1385507 1386601 D PFAM: Smr protein/MutS2; KEGG: dvu:DVU2331 Smr family protein; Smr protein/MutS2 1385507..1386601 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284860 YP_002479761.1 CDS Ddes_1179 NC_011883.1 1386629 1386967 R hypothetical protein complement(1386629..1386967) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284861 YP_002479762.1 CDS Ddes_1180 NC_011883.1 1387089 1387505 R KEGG: dvl:Dvul_0033 hypothetical protein; hypothetical protein complement(1387089..1387505) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284862 YP_002479763.1 CDS Ddes_1181 NC_011883.1 1387498 1390281 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1387498..1390281) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284863 YP_002479764.1 CDS Ddes_1182 NC_011883.1 1390415 1390852 R KEGG: dvl:Dvul_1435 hypothetical protein; hypothetical protein complement(1390415..1390852) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284864 YP_002479765.1 CDS Ddes_1183 NC_011883.1 1391002 1391556 R PFAM: histidine triad (HIT) protein; KEGG: dvl:Dvul_1434 histidine triad (HIT) protein; histidine triad (HIT) protein complement(1391002..1391556) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284865 YP_002479766.1 CDS Ddes_1184 NC_011883.1 1391721 1394438 R PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: dvl:Dvul_1433 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase complement(1391721..1394438) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284866 YP_002479767.1 CDS Ddes_1185 NC_011883.1 1394435 1395367 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dvl:Dvul_1432 tyrosine recombinase XerD; tyrosine recombinase XerD complement(1394435..1395367) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284867 YP_002479768.1 CDS Ddes_1186 NC_011883.1 1395643 1396167 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: lip:LI0240 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1395643..1396167 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284868 YP_002479769.1 CDS Ddes_1187 NC_011883.1 1396278 1396571 D KEGG: dvl:Dvul_1429 TRASH domain-containing protein; TRASH domain-containing protein 1396278..1396571 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284869 YP_002479770.1 CDS Ddes_1188 NC_011883.1 1396981 1401315 R TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA protein activase; KEGG: cth:Cthe_1329 putative CoA-substrate-specific enzyme activase; CoA-substrate-specific enzyme activase complement(1396981..1401315) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284870 YP_002479771.1 CDS Ddes_1189 NC_011883.1 1401550 1402875 R PFAM: Peptidase M23; KEGG: dvu:DVU1851 M24/M37 family peptidase; peptidase M23 complement(1401550..1402875) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284871 YP_002479772.1 CDS Ddes_1190 NC_011883.1 1403072 1403713 D KEGG: dvu:DVU1849 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1403072..1403713 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284872 YP_002479773.1 CDS Ddes_1191 NC_011883.1 1403748 1404662 D PFAM: Mrp protein; KEGG: dvl:Dvul_1315 hypothetical protein; Mrp protein 1403748..1404662 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284873 YP_002479774.1 CDS Ddes_1192 NC_011883.1 1404891 1405451 D TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_1316 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1404891..1405451 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284874 YP_002479775.1 CDS Ddes_1193 NC_011883.1 1405448 1405702 D KEGG: dvl:Dvul_1317 hypothetical protein; hypothetical protein 1405448..1405702 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284875 YP_002479776.1 CDS Ddes_1194 NC_011883.1 1405702 1406004 D PFAM: Septum formation initiator; KEGG: dvl:Dvul_1318 septum formation initiator; septum formation initiator 1405702..1406004 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284876 YP_002479777.1 CDS Ddes_1195 NC_011883.1 1406008 1407177 D KEGG: dvl:Dvul_1319 hypothetical protein; hypothetical protein 1406008..1407177 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284877 YP_002479778.1 CDS Ddes_1196 NC_011883.1 1407314 1408771 D KEGG: dvl:Dvul_1320 putative lipoprotein; hypothetical protein 1407314..1408771 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284878 YP_002479779.1 CDS Ddes_1197 NC_011883.1 1408854 1409867 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1408854..1409867 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284879 YP_002479780.1 CDS Ddes_1198 NC_011883.1 1409937 1411022 D KEGG: dvl:Dvul_1322 metalloendopeptidase glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 1409937..1411022 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284880 YP_002479781.1 CDS Ddes_1199 NC_011883.1 1411162 1411485 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dvl:Dvul_1323 thioredoxin; thioredoxin 1411162..1411485 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284881 YP_002479782.1 CDS Ddes_1200 NC_011883.1 1411482 1412408 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1324 thioredoxin reductase; thioredoxin reductase 1411482..1412408 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284882 YP_002479783.1 CDS Ddes_1201 NC_011883.1 1412401 1413132 D TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dvl:Dvul_1325 putative lipoprotein; outer membrane assembly lipoprotein YfiO 1412401..1413132 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284883 YP_002479784.1 CDS Ddes_1202 NC_011883.1 1413186 1414652 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: dvl:Dvul_1379 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 1413186..1414652 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284884 YP_002479785.1 CDS engB NC_011883.1 1414666 1415271 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1414666..1415271) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284885 YP_002479786.1 CDS Ddes_1204 NC_011883.1 1415460 1416017 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1415460..1416017 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284886 YP_002479787.1 CDS Ddes_1205 NC_011883.1 1416111 1418558 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: dvl:Dvul_1420 cell division FtsK/SpoIIIE; cell division protein FtsK 1416111..1418558 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284887 YP_002479788.1 CDS Ddes_1206 NC_011883.1 1418623 1419300 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dvl:Dvul_1419 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 1418623..1419300 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284888 YP_002479789.1 CDS rpsA NC_011883.1 1419577 1421046 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1419577..1421046 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284889 YP_002479790.1 CDS Ddes_1208 NC_011883.1 1421061 1422488 D KEGG: dvl:Dvul_1611 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1421061..1422488 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284890 YP_002479791.1 CDS Ddes_1209 NC_011883.1 1422650 1424293 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1422650..1424293 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284891 YP_002479792.1 CDS Ddes_1210 NC_011883.1 1424438 1424866 R KEGG: sbm:Shew185_1701 hypothetical protein; hypothetical protein complement(1424438..1424866) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284892 YP_002479793.1 CDS Ddes_1211 NC_011883.1 1424866 1425597 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dvu:DVU1669 ribosomal large subunit pseudouridine synthase B; pseudouridine synthase complement(1424866..1425597) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284893 YP_002479794.1 CDS Ddes_1212 NC_011883.1 1426206 1426829 D KEGG: dvl:Dvul_0781 hypothetical protein; hypothetical protein 1426206..1426829 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284894 YP_002479795.1 CDS Ddes_1213 NC_011883.1 1426847 1427374 D KEGG: dvl:Dvul_0780 hypothetical protein; hypothetical protein 1426847..1427374 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284895 YP_002479796.1 CDS Ddes_1214 NC_011883.1 1427385 1428419 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0779 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1427385..1428419 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284896 YP_002479797.1 CDS Ddes_1215 NC_011883.1 1428419 1429255 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0250 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; binding-protein-dependent transport system inner membrane protein 1428419..1429255 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284897 YP_002479798.1 CDS Ddes_1216 NC_011883.1 1429322 1430917 D PFAM: SMC domain protein; KEGG: dvl:Dvul_0777 SMC domain-containing protein; SMC domain-containing protein 1429322..1430917 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284898 YP_002479799.1 CDS Ddes_1217 NC_011883.1 1431866 1432225 D KEGG: aha:AHA_1235 hypothetical protein; hypothetical protein 1431866..1432225 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284899 YP_002479800.1 CDS Ddes_1218 NC_011883.1 1432262 1432468 D hypothetical protein 1432262..1432468 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284900 YP_002479801.1 CDS Ddes_1219 NC_011883.1 1433575 1435896 R KEGG: smt:Smal_3776 hypothetical protein; hypothetical protein complement(1433575..1435896) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284901 YP_002479802.1 CDS Ddes_1221 NC_011883.1 1436431 1436817 D hypothetical protein 1436431..1436817 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284903 YP_002479803.1 CDS Ddes_1222 NC_011883.1 1436781 1438022 D PFAM: plasmid recombination protein; KEGG: npu:Npun_R3345 plasmid recombination enzyme; plasmid recombination protein 1436781..1438022 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284904 YP_002479804.1 CDS Ddes_1223 NC_011883.1 1438034 1438297 R KEGG: oan:Oant_0679 hypothetical protein; hypothetical protein complement(1438034..1438297) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284905 YP_002479805.1 CDS Ddes_1224 NC_011883.1 1438399 1438683 D PFAM: helix-turn-helix domain protein; KEGG: mxa:MXAN_5872 DNA-binding protein; XRE family transcriptional regulator 1438399..1438683 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284906 YP_002479806.1 CDS Ddes_1225 NC_011883.1 1438897 1440444 R PFAM: protein of unknown function DUF927; KEGG: esa:ESA_03018 hypothetical protein; hypothetical protein complement(1438897..1440444) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284907 YP_002479807.1 CDS Ddes_1226 NC_011883.1 1440503 1440712 R PFAM: regulatory protein MerR; regulatory protein MerR complement(1440503..1440712) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284908 YP_002479808.1 CDS Ddes_1227 NC_011883.1 1440699 1440935 R PFAM: Prophage CP4-57 regulatory; KEGG: dar:Daro_2566 prophage CP4-57 regulatory; phage transcriptional regulator AlpA complement(1440699..1440935) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284909 YP_002479809.1 CDS Ddes_1228 NC_011883.1 1441060 1441890 R hypothetical protein complement(1441060..1441890) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284910 YP_002479810.1 CDS Ddes_1229 NC_011883.1 1441887 1443095 R PFAM: integrase family protein; KEGG: dvu:DVU1527 phage integrase family site specific recombinase; integrase family protein complement(1441887..1443095) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284911 YP_002479811.1 CDS Ddes_1230 NC_011883.1 1443685 1444182 R KEGG: dvl:Dvul_1308 hypothetical protein; hypothetical protein complement(1443685..1444182) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284913 YP_002479812.1 CDS Ddes_1231 NC_011883.1 1444402 1444986 R KEGG: dvl:Dvul_1711 methyltransferase type 11; hypothetical protein complement(1444402..1444986) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284914 YP_002479813.1 CDS Ddes_1232 NC_011883.1 1444983 1445798 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvl:Dvul_1712 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1444983..1445798) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284915 YP_002479814.1 CDS Ddes_1233 NC_011883.1 1446013 1449495 D KEGG: dvl:Dvul_1715 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1446013..1449495 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284916 YP_002479815.1 CDS Ddes_1234 NC_011883.1 1449509 1449664 D hypothetical protein 1449509..1449664 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284917 YP_002479816.1 CDS Ddes_1235 NC_011883.1 1449629 1450711 R KEGG: sfu:Sfum_2254 teichoic acid biosynthesis related protein; teichoic acid biosynthesis-like protein complement(1449629..1450711) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284918 YP_002479817.1 CDS Ddes_1236 NC_011883.1 1451176 1451760 D KEGG: lip:LI0584 hypothetical protein; hypothetical protein 1451176..1451760 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284919 YP_002479818.1 CDS Ddes_1237 NC_011883.1 1452119 1452862 D KEGG: dvl:Dvul_0523 cytochrome c family protein; cytochrome c family protein 1452119..1452862 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284920 YP_002479819.1 CDS Ddes_1238 NC_011883.1 1452870 1454189 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dvl:Dvul_0522 electron transport complex protein RnfC, putative; respiratory-chain NADH dehydrogenase domain 51 kDa subunit 1452870..1454189 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284921 YP_002479820.1 CDS Ddes_1239 NC_011883.1 1454189 1455151 D PFAM: NQR2 and RnfD family protein; KEGG: dvl:Dvul_0521 electron transport complex, RnfABCDGE type, D subunit; NQR2 and RnfD family protein 1454189..1455151 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284922 YP_002479821.1 CDS Ddes_1240 NC_011883.1 1455148 1455726 D PFAM: FMN-binding domain protein; KEGG: dvl:Dvul_0520 FMN-binding domain-containing protein; FMN-binding domain-containing protein 1455148..1455726 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284923 YP_002479822.1 CDS Ddes_1241 NC_011883.1 1455753 1456430 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1455753..1456430 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284924 YP_002479823.1 CDS Ddes_1242 NC_011883.1 1456569 1457141 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: dvl:Dvul_0518 electron transport complex, RnfABCDGE type, A subunit; RnfABCDGE type electron transport complex subunit A 1456569..1457141 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284925 YP_002479824.1 CDS Ddes_1243 NC_011883.1 1457247 1458158 D involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 1457247..1458158 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284926 YP_002479825.1 CDS Ddes_1244 NC_011883.1 1458170 1459213 D PFAM: ApbE family lipoprotein; KEGG: dvu:DVU2798 ApbE family protein; ApbE family lipoprotein 1458170..1459213 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284927 YP_002479826.1 CDS Ddes_1245 NC_011883.1 1459668 1460978 D PFAM: metallophosphoesterase; KEGG: lip:LI0585 DNA repair exonuclease; metallophosphoesterase 1459668..1460978 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284928 YP_002479827.1 CDS Ddes_1246 NC_011883.1 1460978 1465042 D KEGG: lip:LI0586 hypothetical protein; hypothetical protein 1460978..1465042 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284929 YP_002479828.1 CDS Ddes_1247 NC_011883.1 1465329 1465742 D hypothetical protein 1465329..1465742 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284930 YP_002479829.1 CDS Ddes_1248 NC_011883.1 1465892 1467520 D KEGG: dvu:DVU0799 hypothetical protein; hypothetical protein 1465892..1467520 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284931 YP_002479830.1 CDS Ddes_1249 NC_011883.1 1468434 1468901 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bba:Bd0085 cytidine/deoxycytidylate deaminase family protein; CMP/dCMP deaminase 1468434..1468901 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284933 YP_002479831.1 CDS Ddes_1250 NC_011883.1 1469261 1470055 D PFAM: protein of unknown function DUF34; KEGG: dvu:DVU1456 NIF3 family protein; hypothetical protein 1469261..1470055 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284934 YP_002479832.1 CDS Ddes_1251 NC_011883.1 1470077 1470847 D PFAM: protein of unknown function DUF164; KEGG: dvl:Dvul_1624 hypothetical protein; hypothetical protein 1470077..1470847 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284935 YP_002479833.1 CDS Ddes_1252 NC_011883.1 1471325 1472587 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: dvl:Dvul_1625 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1471325..1472587 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284937 YP_002479834.1 CDS Ddes_1253 NC_011883.1 1472603 1474360 D PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_1626 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1472603..1474360 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284938 YP_002479835.1 CDS Ddes_1254 NC_011883.1 1474360 1474842 D PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dvl:Dvul_1627 D-tyrosyl-tRNA deacylase; D-tyrosyl-tRNA(Tyr) deacylase 1474360..1474842 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284939 YP_002479836.1 CDS Ddes_1255 NC_011883.1 1474871 1475224 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dvl:Dvul_1630 anti-sigma-factor antagonist; anti-sigma-factor antagonist 1474871..1475224 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284940 YP_002479837.1 CDS Ddes_1256 NC_011883.1 1475268 1476404 D PFAM: protein of unknown function DUF342; KEGG: lip:LI0134 polymerase; hypothetical protein 1475268..1476404 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284941 YP_002479838.1 CDS Ddes_1257 NC_011883.1 1476401 1478176 D KEGG: dvu:DVU1447 CgeB family protein; CgeB family protein 1476401..1478176 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284942 YP_002479839.1 CDS Ddes_1258 NC_011883.1 1478173 1479588 D PFAM: glycosyl transferase family 9; KEGG: dvu:DVU1446 heptosyltransferase family protein; glycosyl transferase family protein 1478173..1479588 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284943 YP_002479840.1 CDS Ddes_1259 NC_011883.1 1479751 1481610 D PFAM: flagellar hook-length control protein; KEGG: lip:LI0568 flagellar hook-length control protein; flagellar hook-length control protein 1479751..1481610 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284944 YP_002479841.1 CDS Ddes_1260 NC_011883.1 1481636 1482490 D PFAM: flagellar hook capping protein; KEGG: dvl:Dvul_1635 flagellar hook capping protein; flagellar hook capping protein 1481636..1482490 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284945 YP_002479842.1 CDS Ddes_1261 NC_011883.1 1482602 1485028 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: lip:LI0566 flagellar hook protein FlgE; hypothetical protein 1482602..1485028 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284946 YP_002479843.1 CDS Ddes_1262 NC_011883.1 1485609 1486397 R PFAM: Integrase catalytic region; KEGG: dvl:Dvul_2602 integrase catalytic subunit; integrase catalytic subunit complement(1485609..1486397) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284948 YP_002479844.1 CDS Ddes_1263 NC_011883.1 1486454 1486720 R PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU2011 ISD1, transposase OrfA; transposase IS3/IS911 family protein complement(1486454..1486720) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284949 YP_002479845.1 CDS Ddes_1264 NC_011883.1 1492843 1493283 D PFAM: regulatory protein ArsR; KEGG: rru:Rru_A1450 ArsR family transcriptional regulator; ArsR family transcriptional regulator 1492843..1493283 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284956 YP_002479846.1 CDS Ddes_1265 NC_011883.1 1493313 1495403 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: lip:LI0598 cation-transporting ATPase, P-type; heavy metal translocating P-type ATPase 1493313..1495403 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284957 YP_002479847.1 CDS Ddes_1266 NC_011883.1 1495493 1495870 R KEGG: cpy:Cphy_1511 hypothetical protein; hypothetical protein complement(1495493..1495870) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284958 YP_002479848.1 CDS ruvB NC_011883.1 1496118 1497101 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1496118..1497101) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284959 YP_002479849.1 CDS ruvA NC_011883.1 1497101 1497715 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1497101..1497715) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284960 YP_002479850.1 CDS Ddes_1269 NC_011883.1 1497826 1498860 R KEGG: dvl:Dvul_2372 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(1497826..1498860) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284961 YP_002479851.1 CDS Ddes_1270 NC_011883.1 1498934 1499209 D KEGG: dvl:Dvul_2377 hypothetical protein; hypothetical protein 1498934..1499209 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284962 YP_002479852.1 CDS Ddes_1271 NC_011883.1 1499254 1499850 R KEGG: dvl:Dvul_1879 hypothetical protein; hypothetical protein complement(1499254..1499850) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284963 YP_002479853.1 CDS Ddes_1272 NC_011883.1 1500151 1500522 D KEGG: dvl:Dvul_1881 hypothetical protein; hypothetical protein 1500151..1500522 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284964 YP_002479854.1 CDS Ddes_1273 NC_011883.1 1500528 1501892 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1500528..1501892 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284965 YP_002479855.1 CDS Ddes_1274 NC_011883.1 1501886 1502500 D PFAM: protein of unknown function DUF151; KEGG: dvl:Dvul_2005 hypothetical protein; hypothetical protein 1501886..1502500 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284966 YP_002479856.1 CDS Ddes_1275 NC_011883.1 1502649 1503053 D KEGG: dvl:Dvul_2011 hypothetical protein; hypothetical protein 1502649..1503053 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284967 YP_002479857.1 CDS Ddes_1276 NC_011883.1 1503157 1504656 D PFAM: response regulator receiver; KEGG: dvl:Dvul_2012 response regulator receiver protein; response regulator receiver protein 1503157..1504656 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284968 YP_002479858.1 CDS Ddes_1277 NC_011883.1 1504713 1506155 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ecm:EcSMS35_1534 multidrug resistance protein MdtK; MATE efflux family protein complement(1504713..1506155) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284969 YP_002479859.1 CDS Ddes_1278 NC_011883.1 1506703 1507560 R PFAM: protein of unknown function DUF191; KEGG: dvu:DVU2755 hypothetical protein; hypothetical protein complement(1506703..1507560) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284970 YP_002479860.1 CDS Ddes_1279 NC_011883.1 1507645 1508787 D PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_0551 radical SAM domain-containing protein; radical SAM protein 1507645..1508787 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284971 YP_002479861.1 CDS Ddes_1280 NC_011883.1 1508784 1509929 D PFAM: Radical SAM domain protein; KEGG: dvu:DVU2757 radical SAM domain-containing protein; radical SAM protein 1508784..1509929 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284972 YP_002479862.1 CDS Ddes_1281 NC_011883.1 1510057 1510905 D PFAM: protein of unknown function DUF178; KEGG: dvl:Dvul_0549 hypothetical protein; hypothetical protein 1510057..1510905 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284973 YP_002479863.1 CDS gatB NC_011883.1 1511104 1512540 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1511104..1512540) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284974 YP_002479864.1 CDS Ddes_1283 NC_011883.1 1512567 1514312 R KEGG: dvl:Dvul_1277 hypothetical protein; hypothetical protein complement(1512567..1514312) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284975 YP_002479865.1 CDS Ddes_1284 NC_011883.1 1514309 1515178 R PFAM: ATP-NAD/AcoX kinase; KEGG: dvl:Dvul_1276 NAD(+) kinase; ATP-NAD/AcoX kinase complement(1514309..1515178) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284976 YP_002479866.1 CDS Ddes_1285 NC_011883.1 1515304 1515936 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1515304..1515936 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284977 YP_002479867.1 CDS Ddes_1286 NC_011883.1 1515939 1516169 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dvl:Dvul_1274 FmdB family regulatory protein; FmdB family regulatory protein 1515939..1516169 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284978 YP_002479868.1 CDS hemC NC_011883.1 1516181 1517113 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1516181..1517113 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284979 YP_002479869.1 CDS Ddes_1288 NC_011883.1 1517129 1519564 D PFAM: peptidase S16 lon domain protein; KEGG: dvu:DVU1893 ATP-dependent protease, putative; peptidase S16 lon domain-containing protein 1517129..1519564 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284980 YP_002479870.1 CDS Ddes_1289 NC_011883.1 1519686 1520264 D PFAM: regulatory protein TetR; KEGG: dvl:Dvul_1398 TetR family transcriptional regulator; TetR family transcriptional regulator 1519686..1520264 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284981 YP_002479871.1 CDS Ddes_1290 NC_011883.1 1520498 1520617 D hypothetical protein 1520498..1520617 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284982 YP_002479872.1 CDS Ddes_1291 NC_011883.1 1520621 1522066 D PFAM: Na+/solute symporter; KEGG: mem:Memar_1134 Na+/solute symporter; Na+/solute symporter 1520621..1522066 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284983 YP_002479873.1 CDS Ddes_1292 NC_011883.1 1522279 1523586 D PFAM: branched-chain amino acid transport system II carrier protein; KEGG: abu:Abu_1368 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 1522279..1523586 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284984 YP_002479874.1 CDS Ddes_1293 NC_011883.1 1523887 1526205 R TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: pca:Pcar_0543 membrane carboxypeptidase/penicillin-binding protein PbpC; penicillin-binding protein 1C complement(1523887..1526205) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284985 YP_002479875.1 CDS Ddes_1294 NC_011883.1 1526538 1532231 R PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: lpf:lpl1630 hypothetical protein; alpha-2-macroglobulin domain-containing protein complement(1526538..1532231) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284986 YP_002479876.1 CDS Ddes_1295 NC_011883.1 1532278 1532838 R PFAM: protein of unknown function UPF0227; KEGG: abo:ABO_2495 hypothetical protein; hypothetical protein complement(1532278..1532838) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284987 YP_002479877.1 CDS Ddes_1296 NC_011883.1 1533445 1535220 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1533445..1535220) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284988 YP_002479878.1 CDS Ddes_1297 NC_011883.1 1535726 1536109 D KEGG: rci:RRC450 hypothetical protein; hypothetical protein 1535726..1536109 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284989 YP_002479879.1 CDS Ddes_1298 NC_011883.1 1536096 1536338 D KEGG: dvl:Dvul_1811 hypothetical protein; hypothetical protein 1536096..1536338 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284990 YP_002479880.1 CDS Ddes_1300 NC_011883.1 1537611 1539737 R TIGRFAM: dethiobiotin synthase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cha:CHAB381_0700 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1537611..1539737) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284992 YP_002479881.1 CDS Ddes_1301 NC_011883.1 1539721 1540671 R KEGG: pth:PTH_0521 biotin synthase and related enzymes; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(1539721..1540671) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284993 YP_002479882.1 CDS Ddes_1302 NC_011883.1 1541085 1541483 R PFAM: ROSMUCR transcriptional regulator; KEGG: dvl:Dvul_0717 MucR family transcriptional regulator; MucR family transcriptional regulator complement(1541085..1541483) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284994 YP_002479883.1 CDS Ddes_1303 NC_011883.1 1541820 1542563 R KEGG: lip:LI1049 hypothetical protein; hypothetical protein complement(1541820..1542563) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284995 YP_002479884.1 CDS Ddes_1304 NC_011883.1 1542714 1545662 R KEGG: lip:LI1093 outer membrane protein and related peptidoglycan-associated (LipO)proteins; hypothetical protein complement(1542714..1545662) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284996 YP_002479885.1 CDS Ddes_1305 NC_011883.1 1545968 1547107 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvl:Dvul_0471 sigma-54 dependent trancsriptional regulator; Fis family sigma-54 specific transcriptional regulator complement(1545968..1547107) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284997 YP_002479886.1 CDS Ddes_1306 NC_011883.1 1547214 1549916 D KEGG: dvu:DVU1543 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 1547214..1549916 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284998 YP_002479887.1 CDS Ddes_1307 NC_011883.1 1550113 1551111 R PFAM: alpha/beta hydrolase fold; KEGG: dvl:Dvul_1008 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1550113..1551111) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284999 YP_002479888.1 CDS Ddes_1308 NC_011883.1 1551245 1552525 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: dvl:Dvul_1007 hypothetical protein; hypothetical protein 1551245..1552525 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285000 YP_002479889.1 CDS Ddes_1309 NC_011883.1 1552898 1553101 R KEGG: dvu:DVU1567 hypothetical protein; hypothetical protein complement(1552898..1553101) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285001 YP_002479890.1 CDS Ddes_1310 NC_011883.1 1553631 1554422 D PFAM: 17 kDa surface antigen; KEGG: pae:PA0070 hypothetical protein; 17 kDa surface antigen 1553631..1554422 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285002 YP_002479891.1 CDS Ddes_1311 NC_011883.1 1554501 1555661 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: rsq:Rsph17025_4050 hypothetical protein; peptidase S1 and S6 chymotrypsin/Hap 1554501..1555661 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285003 YP_002479892.1 CDS Ddes_1312 NC_011883.1 1555658 1556968 D KEGG: rru:Rru_A3155 hypothetical protein; hypothetical protein 1555658..1556968 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285004 YP_002479893.1 CDS Ddes_1313 NC_011883.1 1556971 1560081 D KEGG: mlo:mll9171 virulence factor SrfB-like protein; virulence factor SrfB-like protein 1556971..1560081 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285005 YP_002479894.1 CDS Ddes_1314 NC_011883.1 1560097 1562733 D KEGG: mlo:mll9170 virulence factor SrfC-like protein; virulence factor SrfC-like protein 1560097..1562733 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285006 YP_002479895.1 CDS Ddes_1315 NC_011883.1 1562737 1563801 D KEGG: ent:Ent638_4237 hypothetical protein; hypothetical protein 1562737..1563801 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285007 YP_002479896.1 CDS Ddes_1316 NC_011883.1 1563912 1565927 D KEGG: pfl:PFL_6078 PpkA-related protein; PpkA-like protein 1563912..1565927 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285008 YP_002479897.1 CDS Ddes_1317 NC_011883.1 1565951 1566763 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_6077 ABC transporter, ATP-binding protein; ABC transporter-like protein 1565951..1566763 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285009 YP_002479898.1 CDS Ddes_1318 NC_011883.1 1566760 1568043 D PFAM: protein of unknown function DUF214; KEGG: pmy:Pmen_2311 hypothetical protein; hypothetical protein 1566760..1568043 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285010 YP_002479899.1 CDS Ddes_1319 NC_011883.1 1568033 1569742 D PFAM: protein of unknown function DUF323; KEGG: pap:PSPA7_0142 hypothetical protein; hypothetical protein 1568033..1569742 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285011 YP_002479900.1 CDS Ddes_1320 NC_011883.1 1569759 1570664 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: Os01g0742300; hypothetical protein ; K00020 3-hydroxyisobutyrate dehydrogenase; 2-hydroxy-3-oxopropionate reductase 1569759..1570664 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285012 YP_002479901.1 CDS Ddes_1321 NC_011883.1 1570769 1572808 D PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: dol:Dole_0847 alpha amylase all-beta; alpha amylase 1570769..1572808 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285013 YP_002479902.1 CDS Ddes_1322 NC_011883.1 1573086 1573943 D KEGG: rso:RS03668 putative hemolysin-type protein; transposase and inactivated derivatives-like protein 1573086..1573943 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285015 YP_002479903.1 CDS Ddes_1323 NC_011883.1 1573983 1574834 D KEGG: afw:Anae109_2925 hypothetical protein; hypothetical protein 1573983..1574834 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285016 YP_002479904.1 CDS Ddes_1324 NC_011883.1 1575849 1576385 R KEGG: rle:RL2802 hypothetical protein; hypothetical protein complement(1575849..1576385) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285017 YP_002479905.1 CDS Ddes_1325 NC_011883.1 1576584 1576787 D KEGG: mxa:MXAN_5238 hypothetical protein; hypothetical protein 1576584..1576787 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285018 YP_002479906.1 CDS Ddes_1326 NC_011883.1 1576850 1577041 R hypothetical protein complement(1576850..1577041) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285019 YP_002479907.1 CDS Ddes_1327 NC_011883.1 1577233 1577691 D PFAM: GCN5-related N-acetyltransferase; KEGG: ppg:PputGB1_2958 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1577233..1577691 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285020 YP_002479908.1 CDS Ddes_1328 NC_011883.1 1578019 1578762 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP3738c hypothetical protein; type 12 methyltransferase complement(1578019..1578762) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285021 YP_002479909.1 CDS Ddes_1329 NC_011883.1 1578864 1579598 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: rso:RSc1804 hypothetical protein; 4'-phosphopantetheinyl transferase complement(1578864..1579598) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285022 YP_002479910.1 CDS Ddes_1330 NC_011883.1 1579585 1581300 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gvi:gll0321 HlyB/MsbA family ABC transporter; ABC transporter-like protein complement(1579585..1581300) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285023 YP_002479911.1 CDS Ddes_1331 NC_011883.1 1581297 1583087 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gvi:gll0322 HlyB/MsbA family ABC transporter; ABC transporter-like protein complement(1581297..1583087) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285024 YP_002479912.1 CDS Ddes_1332 NC_011883.1 1583087 1584412 R TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: stp:Strop_3612 crotonyl-CoA reductase; crotonyl-CoA reductase complement(1583087..1584412) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285025 YP_002479913.1 CDS Ddes_1333 NC_011883.1 1584424 1585167 R PFAM: Thioesterase; KEGG: hau:Haur_1885 oleoyl-(acyl-carrier-protein) hydrolase; Thioesterase complement(1584424..1585167) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285026 YP_002479914.1 CDS Ddes_1334 NC_011883.1 1585160 1593850 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Non-ribosomal peptide synthetase; KR domain protein; Beta-ketoacyl synthase; KEGG: npu:Npun_CR072 amino acid adenylation domain-containing protein; amino acid adenylation domain-containing protein complement(1585160..1593850) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285027 YP_002479915.1 CDS Ddes_1335 NC_011883.1 1593847 1597161 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase; KEGG: npu:Npun_CR072 amino acid adenylation domain-containing protein; amino acid adenylation domain-containing protein complement(1593847..1597161) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285028 YP_002479916.1 CDS Ddes_1336 NC_011883.1 1597158 1601555 R PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; KEGG: hau:Haur_3962 beta-ketoacyl synthase; beta-ketoacyl synthase complement(1597158..1601555) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285029 YP_002479917.1 CDS Ddes_1337 NC_011883.1 1601552 1605028 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase; KEGG: npu:Npun_CR072 amino acid adenylation domain-containing protein; amino acid adenylation domain-containing protein complement(1601552..1605028) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285030 YP_002479918.1 CDS Ddes_1338 NC_011883.1 1605018 1606688 R PFAM: AMP-dependent synthetase and ligase; KEGG: bte:BTH_II1830 salicyl-AMP ligase; AMP-dependent synthetase and ligase complement(1605018..1606688) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285031 YP_002479919.1 CDS Ddes_1339 NC_011883.1 1606838 1608058 R PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A2336 major facilitator transporter; major facilitator superfamily protein complement(1606838..1608058) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285032 YP_002479920.1 CDS Ddes_1340 NC_011883.1 1608075 1609211 R PFAM: ABC-2 type transporter; KEGG: pol:Bpro_3454 ABC-2; ABC-2 type transporter complement(1608075..1609211) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285033 YP_002479921.1 CDS Ddes_1341 NC_011883.1 1609211 1610164 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb0182 ABC-type multidrug transport system; ABC transporter-like protein complement(1609211..1610164) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285034 YP_002479922.1 CDS Ddes_1342 NC_011883.1 1610161 1611114 R KEGG: rce:RC1_2056 HlyD family secretion protein; HlyD family secretion protein complement(1610161..1611114) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285035 YP_002479923.1 CDS Ddes_1343 NC_011883.1 1611202 1613469 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA1059 outer membrane protein, TonB-dependent receptor; TonB-dependent receptor complement(1611202..1613469) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285036 YP_002479924.1 CDS Ddes_1344 NC_011883.1 1613536 1613970 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bpm:BURPS1710b_3453 biopolymer ExbD/TolR family transporter; biopolymer transport protein ExbD/TolR complement(1613536..1613970) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285037 YP_002479925.1 CDS Ddes_1345 NC_011883.1 1614892 1616295 R TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: pfl:PFL_3488 salicylate biosynthesis isochorismate synthase; isochorismate synthase complement(1614892..1616295) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285038 YP_002479926.1 CDS Ddes_1346 NC_011883.1 1616288 1616611 R TIGRFAM: chorismate mutase related enzymes; PFAM: Chorismate mutase; KEGG: bch:Bcen2424_5002 isochorismate-pyruvate lyase; chorismate mutase-like protein complement(1616288..1616611) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285039 YP_002479927.1 CDS Ddes_1347 NC_011883.1 1617882 1619378 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: dvl:Dvul_0252 glycerol kinase; glycerol kinase complement(1617882..1619378) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285041 YP_002479928.1 CDS Ddes_1348 NC_011883.1 1619606 1620526 R KEGG: sfu:Sfum_0004 hypothetical protein; hypothetical protein complement(1619606..1620526) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285042 YP_002479929.1 CDS Ddes_1349 NC_011883.1 1620760 1622589 R PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppw:PputW619_3221 citrate transporter; citrate transporter complement(1620760..1622589) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285043 YP_002479930.1 CDS Ddes_1350 NC_011883.1 1623286 1624698 R PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_0976 hypothetical protein; hypothetical protein complement(1623286..1624698) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285044 YP_002479931.1 CDS Ddes_1351 NC_011883.1 1624709 1625644 R KEGG: pca:Pcar_0934 hypothetical protein; hypothetical protein complement(1624709..1625644) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285045 YP_002479932.1 CDS Ddes_1352 NC_011883.1 1625721 1626587 R PFAM: regulatory protein MerR; KEGG: dps:DP1820 multidrug ABC transporter; MerR family transcriptional regulator complement(1625721..1626587) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285046 YP_002479933.1 CDS Ddes_1353 NC_011883.1 1627033 1627299 R KEGG: cbt:CLH_1372 hypothetical protein; hypothetical protein complement(1627033..1627299) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285047 YP_002479934.1 CDS Ddes_1354 NC_011883.1 1627306 1628403 R KEGG: dps:DP1818 hypothetical protein; hypothetical protein complement(1627306..1628403) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285048 YP_002479935.1 CDS Ddes_1355 NC_011883.1 1629270 1629866 D PFAM: microcompartments protein; KEGG: dps:DP1821 carbon dioxide concentrating mechanism protein (PduA related); microcompartments protein 1629270..1629866 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285049 YP_002479936.1 CDS Ddes_1356 NC_011883.1 1629893 1631371 D KEGG: cbt:CLH_1375 aldehyde-alcohol dehydrogenase 2; aldehyde-alcohol dehydrogenase 2 1629893..1631371 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285050 YP_002479937.1 CDS Ddes_1357 NC_011883.1 1631431 1633977 D PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: cpy:Cphy_1417 formate C-acetyltransferase; Formate C-acetyltransferase 1631431..1633977 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285051 YP_002479938.1 CDS Ddes_1358 NC_011883.1 1634085 1635017 D KEGG: cbk:CLL_A1454 benzylsuccinate synthase activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; glycyl-radical enzyme activating protein family 1634085..1635017 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285052 YP_002479939.1 CDS Ddes_1359 NC_011883.1 1635047 1635655 D PFAM: microcompartments protein; KEGG: cpy:Cphy_1427 microcompartments protein; microcompartments protein 1635047..1635655 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285053 YP_002479940.1 CDS Ddes_1360 NC_011883.1 1635659 1637236 D TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: amt:Amet_0259 acetaldehyde dehydrogenase (acetylating); acetaldehyde dehydrogenase 1635659..1637236 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285054 YP_002479941.1 CDS Ddes_1361 NC_011883.1 1637318 1637605 D PFAM: microcompartments protein; KEGG: efa:EF1623 microcompartment protein; microcompartments protein 1637318..1637605 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285055 YP_002479942.1 CDS Ddes_1362 NC_011883.1 1637679 1638362 D PFAM: Propanediol utilization protein; KEGG: amt:Amet_0262 propanediol utilization protein; propanediol utilization protein 1637679..1638362 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285056 YP_002479943.1 CDS Ddes_1363 NC_011883.1 1638365 1639186 D TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: ctc:CTC02168 ethanolamine utilization protein EutJ; ethanolamine utilization protein EutJ family protein 1638365..1639186 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285057 YP_002479944.1 CDS Ddes_1364 NC_011883.1 1639312 1639950 D KEGG: ctc:CTC02167 putative ethanolamine utilization protein; hypothetical protein 1639312..1639950 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285058 YP_002479945.1 CDS Ddes_1365 NC_011883.1 1639958 1640245 D PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: amt:Amet_0265 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1639958..1640245 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285059 YP_002479946.1 CDS Ddes_1366 NC_011883.1 1640249 1640797 D PFAM: microcompartments protein; KEGG: dps:DP1825 propanediol utilization protein (PduT); microcompartments protein 1640249..1640797 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285060 YP_002479947.1 CDS Ddes_1367 NC_011883.1 1640842 1641177 D KEGG: dps:DP1826 hypothetical protein; hypothetical protein 1640842..1641177 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285061 YP_002479948.1 CDS Ddes_1368 NC_011883.1 1641370 1641654 D PFAM: microcompartments protein; KEGG: efa:EF1623 microcompartment protein; microcompartments protein 1641370..1641654 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285062 YP_002479949.1 CDS Ddes_1369 NC_011883.1 1641739 1642845 D PFAM: iron-containing alcohol dehydrogenase; KEGG: amt:Amet_0269 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1641739..1642845 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285063 YP_002479950.1 CDS Ddes_1370 NC_011883.1 1643137 1644462 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cbt:CLH_1845 ethanolamine utilization Fe-S center protein eut; respiratory-chain NADH dehydrogenase domain 51 kDa subunit 1643137..1644462 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285064 YP_002479951.1 CDS Ddes_1371 NC_011883.1 1644474 1645025 D PFAM: microcompartments protein; KEGG: drm:Dred_1303 microcompartments protein; microcompartments protein 1644474..1645025 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285065 YP_002479952.1 CDS Ddes_1372 NC_011883.1 1645072 1645419 D PFAM: microcompartments protein; KEGG: dps:DP1827 propanediol utilization protein (PduU); microcompartments protein 1645072..1645419 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285066 YP_002479953.1 CDS Ddes_1373 NC_011883.1 1645427 1645861 D KEGG: drm:Dred_1291 ethanolamine utilization protein EutP; ethanolamine utilization protein EutP 1645427..1645861 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285067 YP_002479954.1 CDS Ddes_1374 NC_011883.1 1646148 1646894 D PFAM: protein of unknown function DUF421; KEGG: btr:Btr_0801 hypothetical protein; hypothetical protein 1646148..1646894 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285068 YP_002479955.1 CDS Ddes_1375 NC_011883.1 1647015 1647266 D PFAM: Transglycosylase-associated protein; KEGG: sdy:SDY_1695 hypothetical protein; transglycosylase-associated protein 1647015..1647266 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285069 YP_002479956.1 CDS Ddes_1376 NC_011883.1 1647476 1648309 D KEGG: rfr:Rfer_1189 hypothetical protein; hypothetical protein 1647476..1648309 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285070 YP_002479957.1 CDS Ddes_1377 NC_011883.1 1649052 1650122 D PFAM: CheB methylesterase; response regulator receiver; KEGG: lip:LI1137 chemotaxis response regulator; response regulator receiver modulated CheB methylesterase 1649052..1650122 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285072 YP_002479958.1 CDS Ddes_1378 NC_011883.1 1650149 1652080 D PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: dvl:Dvul_1151 heat repeat-containing PBS lyase; HEAT domain containing protein 1650149..1652080 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285073 YP_002479959.1 CDS Ddes_1379 NC_011883.1 1652083 1653744 D PFAM: MCP methyltransferase CheR-type; KEGG: dvl:Dvul_1152 protein-glutamate O-methyltransferase; CheR-type MCP methyltransferase 1652083..1653744 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285074 YP_002479960.1 CDS Ddes_1380 NC_011883.1 1653751 1654527 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvl:Dvul_1153 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1653751..1654527 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285075 YP_002479961.1 CDS Ddes_1381 NC_011883.1 1654521 1655258 D PFAM: CheW domain protein; KEGG: dvl:Dvul_1154 putative CheW protein; CheW protein 1654521..1655258 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285076 YP_002479962.1 CDS Ddes_1382 NC_011883.1 1655521 1655889 D PFAM: response regulator receiver; KEGG: dvl:Dvul_1155 response regulator receiver protein; response regulator receiver protein 1655521..1655889 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285077 YP_002479963.1 CDS Ddes_1383 NC_011883.1 1655954 1659049 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dvl:Dvul_1156 CheA signal transduction histidine kinases; signal transduction histidine kinase CheA 1655954..1659049 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285078 YP_002479964.1 CDS rpmB NC_011883.1 1659255 1659464 D required for 70S ribosome assembly; 50S ribosomal protein L28 1659255..1659464 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285079 YP_002479965.1 CDS Ddes_1385 NC_011883.1 1659522 1660499 D PFAM: Rhomboid family protein; KEGG: dvl:Dvul_1844 rhomboid family protein; rhomboid family protein 1659522..1660499 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285080 YP_002479966.1 CDS Ddes_1386 NC_011883.1 1660976 1661164 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dvl:Dvul_0286 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(1660976..1661164) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285081 YP_002479967.1 CDS Ddes_1387 NC_011883.1 1661191 1661730 R PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: dvl:Dvul_1675 ferritin, Dps family protein; ferritin Dps family protein complement(1661191..1661730) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285082 YP_002479968.1 CDS Ddes_1388 NC_011883.1 1661984 1662394 R PFAM: ferric-uptake regulator; KEGG: dvl:Dvul_0284 ferric uptake regulator family protein; Fur family ferric uptake regulator complement(1661984..1662394) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285083 YP_002479969.1 CDS Ddes_1389 NC_011883.1 1662475 1663296 D hypothetical protein 1662475..1663296 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285084 YP_002479970.1 CDS Ddes_1390 NC_011883.1 1663537 1664568 R PFAM: Glucokinase; KEGG: dvu:DVU1035 glucokinase, putative; glucokinase complement(1663537..1664568) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285085 YP_002479971.1 CDS Ddes_1391 NC_011883.1 1664579 1666045 R TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: pla:Plav_1895 RfaE bifunctional protein; rfaE bifunctional protein complement(1664579..1666045) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285086 YP_002479972.1 CDS Ddes_1392 NC_011883.1 1666088 1668052 R PFAM: glycosyl transferase group 1; ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2233 ABC transporter related; ABC transporter-like protein complement(1666088..1668052) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285087 YP_002479973.1 CDS Ddes_1393 NC_011883.1 1668120 1669310 R PFAM: protein of unknown function DUF214; KEGG: sfu:Sfum_2234 protein of unknown function DUF214; hypothetical protein complement(1668120..1669310) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285088 YP_002479974.1 CDS Ddes_1394 NC_011883.1 1669575 1670753 R KEGG: sfu:Sfum_2255 glycosyltransferases probably involved in cell wall biogenesis-like; cell wall biogenesis glycosyltransferase-like protein complement(1669575..1670753) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285089 YP_002479975.1 CDS Ddes_1395 NC_011883.1 1670824 1671501 R KEGG: sfu:Sfum_2228 hypothetical protein; hypothetical protein complement(1670824..1671501) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285090 YP_002479976.1 CDS Ddes_1396 NC_011883.1 1671664 1672986 R PFAM: glycosyl transferase group 1; KEGG: sfu:Sfum_2253 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1671664..1672986) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285091 YP_002479977.1 CDS Ddes_1397 NC_011883.1 1673211 1674224 D KEGG: sfu:Sfum_2250 hypothetical protein; hypothetical protein 1673211..1674224 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285092 YP_002479978.1 CDS Ddes_1398 NC_011883.1 1674224 1675009 D KEGG: pst:PSPTO_3879 hypothetical protein; hypothetical protein 1674224..1675009 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285093 YP_002479979.1 CDS Ddes_1399 NC_011883.1 1675132 1676034 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvl:Dvul_1985 hypothetical protein; hypothetical protein 1675132..1676034 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285094 YP_002479980.1 CDS Ddes_1400 NC_011883.1 1676047 1677102 R KEGG: lip:LI0105 hypothetical protein; hypothetical protein complement(1676047..1677102) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285095 YP_002479981.1 CDS Ddes_1401 NC_011883.1 1677162 1678682 D KEGG: dvu:DVU0897 RNA modification protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 1677162..1678682 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285096 YP_002479982.1 CDS Ddes_1402 NC_011883.1 1679002 1679583 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvl:Dvul_1994 PfpI family intracellular peptidase; PfpI family intracellular protease complement(1679002..1679583) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285097 YP_002479983.1 CDS Ddes_1403 NC_011883.1 1679802 1680059 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dvl:Dvul_1995 FmdB family regulatory protein; FmdB family regulatory protein 1679802..1680059 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285098 YP_002479984.1 CDS Ddes_1404 NC_011883.1 1680217 1681098 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: dvl:Dvul_2086 hypothetical protein; hypothetical protein 1680217..1681098 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285099 YP_002479985.1 CDS Ddes_1405 NC_011883.1 1681102 1681356 D PFAM: protein of unknown function DUF370; KEGG: dvl:Dvul_2085 hypothetical protein; hypothetical protein 1681102..1681356 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285100 YP_002479986.1 CDS Ddes_1406 NC_011883.1 1681356 1681964 D KEGG: lip:LI0310 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 1681356..1681964 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285101 YP_002479987.1 CDS Ddes_1407 NC_011883.1 1682039 1682746 D KEGG: dvl:Dvul_2083 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1682039..1682746 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285102 YP_002479988.1 CDS Ddes_1408 NC_011883.1 1682762 1683619 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_2082 TPR repeat-containing protein; hypothetical protein 1682762..1683619 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285103 YP_002479989.1 CDS Ddes_1409 NC_011883.1 1683643 1685379 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dvl:Dvul_2080 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1683643..1685379 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285104 YP_002479990.1 CDS Ddes_1410 NC_011883.1 1685605 1686798 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cdf:CD2887 putative signaling protein; diguanylate cyclase 1685605..1686798 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285105 YP_002479991.1 CDS Ddes_1411 NC_011883.1 1686882 1687727 R PFAM: cyclic nucleotide-binding; KEGG: dsy:DSY3652 hypothetical protein; cyclic nucleotide-binding protein complement(1686882..1687727) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285106 YP_002479992.1 CDS Ddes_1412 NC_011883.1 1688027 1689475 D KEGG: drm:Dred_0607 hypothetical protein; hypothetical protein 1688027..1689475 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285107 YP_002479993.1 CDS Ddes_1413 NC_011883.1 1689920 1691452 R KEGG: lip:LI0461 hypothetical protein; hypothetical protein complement(1689920..1691452) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285108 YP_002479994.1 CDS Ddes_1414 NC_011883.1 1691787 1693121 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B0285 major facilitator superfamily sugar transporter; major facilitator superfamily protein 1691787..1693121 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285109 YP_002479995.1 CDS Ddes_1415 NC_011883.1 1693222 1694046 D KEGG: drm:Dred_0606 hypothetical protein; hypothetical protein 1693222..1694046 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285110 YP_002479996.1 CDS Ddes_1416 NC_011883.1 1694056 1695441 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dvl:Dvul_1653 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1694056..1695441 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285111 YP_002479997.1 CDS Ddes_1417 NC_011883.1 1695465 1695845 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: esa:ESA_00425 glycine cleavage system protein H; glycine cleavage system H protein 1695465..1695845 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285112 YP_002479998.1 CDS Ddes_1418 NC_011883.1 1696571 1697368 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(1696571..1697368) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285114 YP_002479999.1 CDS Ddes_1419 NC_011883.1 1697507 1697701 D KEGG: dvl:Dvul_1426 hypothetical protein; hypothetical protein 1697507..1697701 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285115 YP_002480000.1 CDS Ddes_1420 NC_011883.1 1698025 1700037 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1698025..1700037) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285116 YP_002480001.1 CDS Ddes_1421 NC_011883.1 1700071 1701159 R PFAM: PSP1 domain protein; KEGG: dvl:Dvul_1170 PSP1 domain-containing protein; PSP1 domain-containing protein complement(1700071..1701159) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285117 YP_002480002.1 CDS Ddes_1422 NC_011883.1 1701448 1702005 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvl:Dvul_1169 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1701448..1702005 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285118 YP_002480003.1 CDS Ddes_1423 NC_011883.1 1702022 1703329 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 1702022..1703329 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285119 YP_002480004.1 CDS Ddes_1424 NC_011883.1 1703544 1704323 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(1703544..1704323) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285120 YP_002480005.1 CDS Ddes_1425 NC_011883.1 1704347 1706485 R KEGG: dvu:DVU1608 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(1704347..1706485) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285121 YP_002480006.1 CDS Ddes_1426 NC_011883.1 1706598 1708634 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1706598..1708634) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285122 YP_002480007.1 CDS Ddes_1427 NC_011883.1 1708692 1709186 D KEGG: dvl:Dvul_1530 hypothetical protein; hypothetical protein 1708692..1709186 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285123 YP_002480008.1 CDS Ddes_1428 NC_011883.1 1709147 1709941 R KEGG: dvl:Dvul_1531 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase complement(1709147..1709941) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285124 YP_002480009.1 CDS Ddes_1429 NC_011883.1 1710238 1712736 R KEGG: dvl:Dvul_1532 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(1710238..1712736) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285125 YP_002480010.1 CDS Ddes_1430 NC_011883.1 1712745 1713065 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: lip:LI0617 hypothetical protein; ATP-dependent Clp protease adaptor protein ClpS complement(1712745..1713065) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285126 YP_002480011.1 CDS Ddes_1431 NC_011883.1 1713089 1713730 R PFAM: adenylate cyclase; KEGG: dvl:Dvul_1534 adenylate cyclase; adenylate cyclase complement(1713089..1713730) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285127 YP_002480012.1 CDS Ddes_1432 NC_011883.1 1713730 1715106 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1713730..1715106) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285128 YP_002480013.1 CDS Ddes_1433 NC_011883.1 1715454 1716344 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: azo:azo2604 hypothetical protein; hypothetical protein complement(1715454..1716344) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285129 YP_002480014.1 CDS Ddes_1434 NC_011883.1 1716341 1717741 R KEGG: dvu:DVU2827 sigma-54 dependent transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; Fis family PAS modulated sigma54 specific transcriptional regulator complement(1716341..1717741) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285130 YP_002480015.1 CDS Ddes_1435 NC_011883.1 1717769 1718707 R KEGG: dvl:Dvul_0490 glycyl-radical activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family complement(1717769..1718707) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285131 YP_002480016.1 CDS Ddes_1436 NC_011883.1 1718817 1721312 R PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: dvl:Dvul_0491 formate C-acetyltransferase; Formate C-acetyltransferase complement(1718817..1721312) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285132 YP_002480017.1 CDS Ddes_1437 NC_011883.1 1722037 1722870 D PFAM: amidohydrolase 2; KEGG: dvu:DVU2820 amidohydrolase family protein; amidohydrolase 2 1722037..1722870 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285133 YP_002480018.1 CDS Ddes_1438 NC_011883.1 1722882 1724258 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_C6090 major facilitator transporter; major facilitator superfamily protein 1722882..1724258 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285134 YP_002480019.1 CDS Ddes_1439 NC_011883.1 1724746 1725465 R TIGRFAM: MJ0042 family finger-like protein; KEGG: dvl:Dvul_1544 zinc finger-domain-containing protein; hypothetical protein complement(1724746..1725465) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285135 YP_002480020.1 CDS Ddes_1440 NC_011883.1 1725513 1726064 R KEGG: dvl:Dvul_1545 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(1725513..1726064) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285136 YP_002480021.1 CDS Ddes_1441 NC_011883.1 1726285 1726761 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aba:Acid345_1843 thioredoxin-like; redoxin domain-containing protein complement(1726285..1726761) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285137 YP_002480022.1 CDS Ddes_1442 NC_011883.1 1726873 1729281 R PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dvl:Dvul_1548 homocysteine S-methyltransferase; homocysteine S-methyltransferase complement(1726873..1729281) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285138 YP_002480023.1 CDS Ddes_1443 NC_011883.1 1729654 1730955 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: dvl:Dvul_1549 sigma-70 region 2 domain-containing protein; putative RNA polymerase sigma 70 family subunit 1729654..1730955 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285139 YP_002480024.1 CDS Ddes_1444 NC_011883.1 1731092 1732837 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_1550 TPR repeat-containing protein; hypothetical protein 1731092..1732837 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285140 YP_002480025.1 CDS Ddes_1445 NC_011883.1 1732834 1733628 D KEGG: dvu:DVU1582 hypothetical protein; hypothetical protein 1732834..1733628 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285141 YP_002480026.1 CDS Ddes_1446 NC_011883.1 1733906 1734340 D KEGG: dvl:Dvul_1553 RpiB/LacA/LacB family sugar-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; ribose 5-phosphate isomerase B 1733906..1734340 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285142 YP_002480027.1 CDS cysS NC_011883.1 1734350 1735801 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1734350..1735801 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285143 YP_002480028.1 CDS Ddes_1448 NC_011883.1 1735831 1737240 D PFAM: TPR repeat-containing protein; peptidase M48 Ste24p; SMART: Tetratricopeptide domain protein; KEGG: dvu:DVU1578 TPR domain-containing protein; peptidase M48 Ste24p 1735831..1737240 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285144 YP_002480029.1 CDS Ddes_1449 NC_011883.1 1737240 1737773 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1737240..1737773 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285145 YP_002480030.1 CDS Ddes_1450 NC_011883.1 1738034 1738921 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1738034..1738921 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285146 YP_002480031.1 CDS Ddes_1451 NC_011883.1 1739188 1740135 D KEGG: dvl:Dvul_1558 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 1739188..1740135 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285148 YP_002480032.1 CDS Ddes_1452 NC_011883.1 1740403 1741002 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1740403..1741002 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285149 YP_002480033.1 CDS Ddes_1453 NC_011883.1 1741262 1742164 D PFAM: alpha/beta hydrolase fold; KEGG: nca:Noca_1054 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1741262..1742164 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285150 YP_002480034.1 CDS Ddes_1454 NC_011883.1 1742154 1742843 D PFAM: peptidyl-tRNA hydrolase; KEGG: dvl:Dvul_1560 peptidyl-tRNA hydrolase; Aminoacyl-tRNA hydrolase 1742154..1742843 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285151 YP_002480035.1 CDS Ddes_1455 NC_011883.1 1743230 1743745 D PFAM: transcription factor CarD; KEGG: dvl:Dvul_1561 CarD family transcriptional regulator; CarD family transcriptional regulator 1743230..1743745 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285152 YP_002480036.1 CDS rho NC_011883.1 1744049 1745344 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1744049..1745344 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285153 YP_002480037.1 CDS Ddes_1457 NC_011883.1 1745559 1745870 D PFAM: cytochrome c class I; KEGG: pha:PSHAa0285 cytochrome c4; cytochrome c class I 1745559..1745870 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285154 YP_002480038.1 CDS Ddes_1458 NC_011883.1 1745959 1746708 R PFAM: Endonuclease I; KEGG: lip:LI0181 endonuclease I; Deoxyribonuclease I complement(1745959..1746708) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285155 YP_002480039.1 CDS Ddes_1459 NC_011883.1 1747561 1748250 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dvl:Dvul_0282 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1747561..1748250 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285157 YP_002480040.1 CDS Ddes_1460 NC_011883.1 1748253 1748729 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvl:Dvul_0281 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1748253..1748729 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285158 YP_002480041.1 CDS Ddes_1461 NC_011883.1 1748726 1749403 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: spe:Spro_2682 transport protein TonB; TonB family protein 1748726..1749403 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285159 YP_002480042.1 CDS Ddes_1462 NC_011883.1 1750319 1750663 R hypothetical protein complement(1750319..1750663) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285160 YP_002480043.1 CDS Ddes_1463 NC_011883.1 1751371 1753905 D KEGG: bpl:BURPS1106A_2083 putative outer membrane protein; hypothetical protein 1751371..1753905 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285161 YP_002480044.1 CDS Ddes_1464 NC_011883.1 1754324 1755757 D KEGG: dvl:Dvul_0905 hypothetical protein; hypothetical protein 1754324..1755757 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285162 YP_002480045.1 CDS Ddes_1465 NC_011883.1 1755818 1756141 D KEGG: mhu:Mhun_0339 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 1755818..1756141 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285163 YP_002480046.1 CDS Ddes_1466 NC_011883.1 1756312 1757589 R TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: tpd:Teth39_1192 competence damage-inducible protein A; competence/damage-inducible protein CinA complement(1756312..1757589) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285164 YP_002480047.1 CDS Ddes_1467 NC_011883.1 1757789 1757944 D hypothetical protein 1757789..1757944 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285165 YP_002480048.1 CDS Ddes_1468 NC_011883.1 1757941 1759233 D KEGG: cbe:Cbei_0766 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 1757941..1759233 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285166 YP_002480049.1 CDS Ddes_1469 NC_011883.1 1759497 1759952 D hypothetical protein 1759497..1759952 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285167 YP_002480050.1 CDS Ddes_1470 NC_011883.1 1760276 1761046 D KEGG: dol:Dole_2023 hypothetical protein; hypothetical protein 1760276..1761046 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285168 YP_002480051.1 CDS Ddes_1471 NC_011883.1 1761277 1761900 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 1761277..1761900 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285169 YP_002480052.1 CDS Ddes_1472 NC_011883.1 1762052 1762852 D KEGG: dvl:Dvul_1922 hypothetical protein; hypothetical protein 1762052..1762852 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285170 YP_002480053.1 CDS Ddes_1473 NC_011883.1 1762870 1763631 D TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dvl:Dvul_1937 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt ABC transporter inner membrane subunit CbiQ 1762870..1763631 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285171 YP_002480054.1 CDS Ddes_1474 NC_011883.1 1763624 1764376 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1938 ABC transporter related; ABC transporter-like protein 1763624..1764376 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285172 YP_002480055.1 CDS Ddes_1475 NC_011883.1 1764700 1766115 D KEGG: met:M446_2203 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1764700..1766115 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285173 YP_002480056.1 CDS Ddes_1476 NC_011883.1 1766141 1767223 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dvu:DVU3191 ribosomal large subunit pseudouridine synthase C; pseudouridine synthase 1766141..1767223 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285174 YP_002480057.1 CDS engA NC_011883.1 1767304 1768668 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1767304..1768668 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285175 YP_002480058.1 CDS Ddes_1478 NC_011883.1 1768920 1770050 D PFAM: Extracellular ligand-binding receptor; KEGG: dvl:Dvul_2397 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1768920..1770050 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285176 YP_002480059.1 CDS Ddes_1479 NC_011883.1 1770178 1771086 D PFAM: inner-membrane translocator; KEGG: dvl:Dvul_2396 inner-membrane translocator; inner-membrane translocator 1770178..1771086 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285177 YP_002480060.1 CDS Ddes_1480 NC_011883.1 1771089 1772312 D PFAM: inner-membrane translocator; KEGG: dvu:DVU0549 high-affinity branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 1771089..1772312 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285178 YP_002480061.1 CDS Ddes_1481 NC_011883.1 1772309 1773094 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2394 ABC transporter related; ABC transporter-like protein 1772309..1773094 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285179 YP_002480062.1 CDS Ddes_1482 NC_011883.1 1773087 1773791 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2393 ABC transporter related; ABC transporter-like protein 1773087..1773791 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285180 YP_002480063.1 CDS Ddes_1483 NC_011883.1 1773900 1774928 R PFAM: Domain of unknown function DUF1848; KEGG: cpc:Cpar_0387 domain of unknown function DUF1848; hypothetical protein complement(1773900..1774928) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285181 YP_002480064.1 CDS Ddes_1484 NC_011883.1 1775081 1775248 D hypothetical protein 1775081..1775248 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285182 YP_002480065.1 CDS Ddes_1485 NC_011883.1 1775248 1775655 D TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dvl:Dvul_1716 putative 6-pyruvoyl tetrahydropterin synthase; queuosine biosynthesis protein QueD 1775248..1775655 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285183 YP_002480066.1 CDS Ddes_1486 NC_011883.1 1775678 1776523 D KEGG: dvl:Dvul_0466 hypothetical protein; hypothetical protein 1775678..1776523 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285184 YP_002480067.1 CDS Ddes_1487 NC_011883.1 1776543 1777166 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pca:Pcar_0173 multimeric flavodoxin WrbA; NADPH-dependent FMN reductase 1776543..1777166 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285185 YP_002480068.1 CDS Ddes_1488 NC_011883.1 1777534 1778031 R hypothetical protein complement(1777534..1778031) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285186 YP_002480069.1 CDS Ddes_1489 NC_011883.1 1778172 1778960 D PFAM: Ion transport 2 domain protein; KEGG: amr:AM1_0155 ion transport protein, putative; Ion transport 2 domain-containing protein 1778172..1778960 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285187 YP_002480070.1 CDS Ddes_1490 NC_011883.1 1779129 1780283 R PFAM: ABC-2 type transporter; KEGG: hne:HNE_1536 ABC transporter, permease protein; ABC-2 type transporter complement(1779129..1780283) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285188 YP_002480071.1 CDS Ddes_1491 NC_011883.1 1780339 1781466 R PFAM: ABC-2 type transporter; KEGG: smd:Smed_4696 ABC-2 type transporter; ABC-2 type transporter complement(1780339..1781466) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285189 YP_002480072.1 CDS Ddes_1492 NC_011883.1 1781543 1783396 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_2369 ABC transporter related; ABC transporter-like protein complement(1781543..1783396) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285190 YP_002480073.1 CDS Ddes_1493 NC_011883.1 1783393 1784391 R PFAM: secretion protein HlyD family protein; KEGG: smd:Smed_4698 hypothetical protein; secretion protein HlyD family protein complement(1783393..1784391) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285191 YP_002480074.1 CDS Ddes_1494 NC_011883.1 1784948 1786405 R PFAM: Catalase domain protein; KEGG: dvl:Dvul_3018 catalase; catalase complement(1784948..1786405) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285192 YP_002480075.1 CDS Ddes_1495 NC_011883.1 1786577 1787305 R PFAM: Sporulation domain protein; KEGG: dvl:Dvul_1815 sporulation domain-containing protein; sporulation domain-containing protein complement(1786577..1787305) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285193 YP_002480076.1 CDS Ddes_1496 NC_011883.1 1787613 1788596 D hypothetical protein 1787613..1788596 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285194 YP_002480077.1 CDS Ddes_1497 NC_011883.1 1788933 1789601 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dvl:Dvul_0929 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(1788933..1789601) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285195 YP_002480078.1 CDS Ddes_1498 NC_011883.1 1789772 1790125 R PFAM: hydrogenase expression/synthesis HypA; KEGG: dvl:Dvul_0930 hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA complement(1789772..1790125) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285196 YP_002480079.1 CDS Ddes_1499 NC_011883.1 1790195 1791463 D KEGG: lip:LI0247 hypothetical protein; hypothetical protein 1790195..1791463 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285197 YP_002480080.1 CDS Ddes_1500 NC_011883.1 1791507 1792340 D KEGG: dvl:Dvul_0932 hypothetical protein; putative FHA domain-containing protein 1791507..1792340 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285198 YP_002480081.1 CDS Ddes_1501 NC_011883.1 1792451 1793677 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: dvu:DVU1768 GTP-binding protein; small GTP-binding protein complement(1792451..1793677) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285199 YP_002480082.1 CDS Ddes_1502 NC_011883.1 1793814 1794188 R PFAM: iron hydrogenase small subunit; KEGG: dvl:Dvul_1385 ferredoxin hydrogenase; ferredoxin hydrogenase complement(1793814..1794188) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285200 YP_002480083.1 CDS Ddes_1503 NC_011883.1 1794197 1795453 R KEGG: dvl:Dvul_1386 hydrogenases, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; hydrogenase, Fe-only complement(1794197..1795453) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285201 YP_002480084.1 CDS Ddes_1504 NC_011883.1 1795556 1796551 R catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase complement(1795556..1796551) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285202 YP_002480085.1 CDS thiH NC_011883.1 1796577 1797980 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH complement(1796577..1797980) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285203 YP_002480086.1 CDS Ddes_1506 NC_011883.1 1798860 1799279 D hypothetical protein 1798860..1799279 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285204 YP_002480087.1 CDS Ddes_1507 NC_011883.1 1799444 1800781 D PFAM: sodium:dicarboxylate symporter; KEGG: ypb:YPTS_4048 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1799444..1800781 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285205 YP_002480088.1 CDS Ddes_1508 NC_011883.1 1801281 1801850 D PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: swo:Swol_1664 formylmethanofuran dehydrogenase, subunit E region; formylmethanofuran dehydrogenase subunit E 1801281..1801850 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285206 YP_002480089.1 CDS Ddes_1509 NC_011883.1 1801843 1802616 D PFAM: protein of unknown function DUF364; KEGG: swo:Swol_1665 protein of unknown function DUF364; hypothetical protein 1801843..1802616 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285207 YP_002480090.1 CDS Ddes_1510 NC_011883.1 1802607 1803434 D KEGG: amt:Amet_1511 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1802607..1803434 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285208 YP_002480091.1 CDS Ddes_1511 NC_011883.1 1803664 1805250 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cpr:CPR_1917 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein; 5'-nucleotidase complement(1803664..1805250) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285209 YP_002480092.1 CDS Ddes_1512 NC_011883.1 1805261 1806211 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ppd:Ppro_1537 TonB family protein; TonB family protein complement(1805261..1806211) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285210 YP_002480093.1 CDS Ddes_1513 NC_011883.1 1806208 1806966 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3704 ABC transporter related; ABC transporter-like protein complement(1806208..1806966) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285211 YP_002480094.1 CDS Ddes_1514 NC_011883.1 1806963 1807970 R PFAM: transport system permease protein; KEGG: nha:Nham_0954 transport system permease protein; transport system permease complement(1806963..1807970) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285212 YP_002480095.1 CDS Ddes_1515 NC_011883.1 1807957 1808994 R PFAM: periplasmic binding protein; KEGG: sfu:Sfum_3702 periplasmic binding protein; periplasmic binding protein complement(1807957..1808994) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285213 YP_002480096.1 CDS Ddes_1516 NC_011883.1 1809375 1811447 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sat:SYN_01048 iron(III) dicitrate transport protein; TonB-dependent receptor complement(1809375..1811447) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285214 YP_002480097.1 CDS Ddes_1517 NC_011883.1 1812374 1812820 D PFAM: UspA domain protein; KEGG: dvu:DVU0423 universal stress protein; UspA domain-containing protein 1812374..1812820 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285215 YP_002480098.1 CDS Ddes_1518 NC_011883.1 1813039 1814463 D KEGG: dvl:Dvul_0905 hypothetical protein; hypothetical protein 1813039..1814463 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285216 YP_002480099.1 CDS glpC NC_011883.1 1814927 1816156 R anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C complement(1814927..1816156) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285217 YP_002480100.1 CDS Ddes_1520 NC_011883.1 1816153 1817439 R sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B complement(1816153..1817439) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285218 YP_002480101.1 CDS Ddes_1521 NC_011883.1 1817423 1819030 R TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: drm:Dred_2844 FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase complement(1817423..1819030) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285219 YP_002480102.1 CDS Ddes_1522 NC_011883.1 1819280 1820059 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dvl:Dvul_1227 HAD family hydrolase; HAD-superfamily hydrolase 1819280..1820059 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285220 YP_002480103.1 CDS Ddes_1523 NC_011883.1 1820247 1821536 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: gka:GK1972 transporter; TRAP dicarboxylate transporter subunit DctM complement(1820247..1821536) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285221 YP_002480104.1 CDS Ddes_1524 NC_011883.1 1821546 1822106 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bpa:BPP2118 ABC transporter; tripartite AtP-independent periplasmic transporter subunit DctQ complement(1821546..1822106) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285222 YP_002480105.1 CDS Ddes_1525 NC_011883.1 1822224 1823228 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: gka:GK1974 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein); TRAP dicarboxylate transporter subunit DctP complement(1822224..1823228) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285223 YP_002480106.1 CDS Ddes_1526 NC_011883.1 1823438 1823626 R hypothetical protein complement(1823438..1823626) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285224 YP_002480107.1 CDS Ddes_1527 NC_011883.1 1824202 1825551 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mmq:MmarC5_1523 citrate transporter; anion transporter 1824202..1825551 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285225 YP_002480108.1 CDS Ddes_1528 NC_011883.1 1825624 1826469 D KEGG: cha:CHAB381_0023 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 1825624..1826469 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285226 YP_002480109.1 CDS Ddes_1529 NC_011883.1 1826479 1827039 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: wsu:WS1767 fumarate hydratase B, beta subunit; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 1826479..1827039 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285227 YP_002480110.1 CDS Ddes_1530 NC_011883.1 1827098 1827727 D PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: sfu:Sfum_2000 fumarate reductase respiratory complex, transmembrane subunit; fumarate reductase respiratory complex transmembrane subunit 1827098..1827727 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285228 YP_002480111.1 CDS Ddes_1531 NC_011883.1 1827738 1829594 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 1827738..1829594 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285229 YP_002480112.1 CDS frdB NC_011883.1 1829606 1830391 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 1829606..1830391 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285230 YP_002480113.1 CDS Ddes_1533 NC_011883.1 1830506 1831177 D PFAM: CBS domain containing protein; KEGG: dvl:Dvul_0535 CBS domain-containing protein; hypothetical protein 1830506..1831177 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285231 YP_002480114.1 CDS Ddes_1534 NC_011883.1 1831393 1832664 D PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: dsy:DSY1923 hypothetical protein; malate dehydrogenase 1831393..1832664 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285232 YP_002480115.1 CDS Ddes_1535 NC_011883.1 1833121 1833747 R KEGG: bsu:BSU31520 sensory histidine kinase DcuS; signal transduction histidine kinase regulating citrate/malate metabolism complement(1833121..1833747) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285233 YP_002480116.1 CDS Ddes_1536 NC_011883.1 1833949 1836108 R KEGG: dvu:DVU2083 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(1833949..1836108) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285234 YP_002480117.1 CDS Ddes_1537 NC_011883.1 1836474 1836692 D hypothetical protein 1836474..1836692 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285235 YP_002480118.1 CDS Ddes_1538 NC_011883.1 1836812 1838503 R PFAM: extracellular solute-binding protein family 5; KEGG: dvl:Dvul_1145 extracellular solute-binding protein; family 5 extracellular solute-binding protein complement(1836812..1838503) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285236 YP_002480119.1 CDS Ddes_1539 NC_011883.1 1838622 1841897 D KEGG: dvl:Dvul_1144 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; Non-specific serine/threonine protein kinase 1838622..1841897 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285237 YP_002480120.1 CDS Ddes_1540 NC_011883.1 1842222 1843268 D PFAM: ABC transporter related; ABC transporter, conserved site; SMART: AAA ATPase; KEGG: cno:NT01CX_0186 ABC transporter, ATP-binding protein; ABC transporter-like protein 1842222..1843268 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285238 YP_002480121.1 CDS Ddes_1541 NC_011883.1 1843261 1843968 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ckl:CKL_0666 ABC transporter permease; binding-protein-dependent transport system inner membrane protein 1843261..1843968 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285239 YP_002480122.1 CDS Ddes_1542 NC_011883.1 1844039 1844815 D PFAM: NLPA lipoprotein; KEGG: cno:NT01CX_0184 NlpA family lipoprotein; NLPA lipoprotein 1844039..1844815 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285240 YP_002480123.1 CDS Ddes_1543 NC_011883.1 1845338 1847194 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mta:Moth_2314 respiratory-chain NADH dehydrogenase, 51 kDa subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1845338..1847194 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285241 YP_002480124.1 CDS Ddes_1544 NC_011883.1 1847420 1848544 D PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; KEGG: dol:Dole_0845 molybdopterin oxidoreductase Fe4s4 region; molybdopterin oxidoreductase Fe4S4 region 1847420..1848544 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285242 YP_002480125.1 CDS Ddes_1545 NC_011883.1 1848593 1850176 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfu:Sfum_3509 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase 1848593..1850176 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285243 YP_002480126.1 CDS Ddes_1546 NC_011883.1 1850477 1853293 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: dvl:Dvul_2725 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase 1850477..1853293 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285244 YP_002480127.1 CDS groES NC_011883.1 1854032 1854319 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1854032..1854319 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285245 YP_002480128.1 CDS groEL NC_011883.1 1854361 1856010 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1854361..1856010 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285246 YP_002480129.1 CDS Ddes_1549 NC_011883.1 1856089 1857345 D PFAM: UV-endonuclease UvdE; KEGG: amt:Amet_0131 putative UV damage endonuclease; UV-endonuclease UvdE 1856089..1857345 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285247 YP_002480130.1 CDS Ddes_1550 NC_011883.1 1857509 1858114 R PFAM: regulatory protein TetR; KEGG: smt:Smal_3546 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1857509..1858114) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285248 YP_002480131.1 CDS Ddes_1552 NC_011883.1 1859873 1863448 R PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dvl:Dvul_1329 PEP-utilising enzyme, mobile region; pyruvate phosphate dikinase complement(1859873..1863448) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285250 YP_002480132.1 CDS Ddes_1553 NC_011883.1 1863713 1867414 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(1863713..1867414) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285251 YP_002480133.1 CDS Ddes_1554 NC_011883.1 1867420 1868253 R TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dvl:Dvul_1327 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase complement(1867420..1868253) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285252 YP_002480134.1 CDS Ddes_1555 NC_011883.1 1868288 1869352 D PFAM: Polynucleotide adenylyltransferase region; KEGG: dvu:DVU1836 tRNA nucleotidyltransferase, putative; polynucleotide adenylyltransferase 1868288..1869352 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285253 YP_002480135.1 CDS Ddes_1556 NC_011883.1 1869651 1870121 R PFAM: protein of unknown function UPF0054; KEGG: dvl:Dvul_1281 hypothetical protein; hypothetical protein complement(1869651..1870121) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285254 YP_002480136.1 CDS Ddes_1557 NC_011883.1 1870118 1872673 R KEGG: dvl:Dvul_1282 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(1870118..1872673) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285255 YP_002480137.1 CDS Ddes_1558 NC_011883.1 1872639 1873637 R PFAM: PhoH family protein; KEGG: dvl:Dvul_1283 PhoH family protein; PhoH family protein complement(1872639..1873637) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285256 YP_002480138.1 CDS Ddes_1559 NC_011883.1 1873830 1875053 D KEGG: lip:LI0899 hypothetical protein; hypothetical protein 1873830..1875053 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285257 YP_002480139.1 CDS Ddes_1560 NC_011883.1 1875627 1876535 D PFAM: extracellular solute-binding protein family 3; KEGG: pmr:PMI0437 glutamate/aspartate ABC transporter, substrate-binding protein; family 3 extracellular solute-binding protein 1875627..1876535 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285258 YP_002480140.1 CDS Ddes_1561 NC_011883.1 1876655 1877404 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmr:PMI0436 glutamate/aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 1876655..1877404 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285259 YP_002480141.1 CDS Ddes_1562 NC_011883.1 1877397 1878074 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stm:STM0663 glutamate/aspartate transporter; polar amino acid ABC transporter inner membrane subunit 1877397..1878074 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285260 YP_002480142.1 CDS Ddes_1563 NC_011883.1 1878095 1878823 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: esa:ESA_02684 hypothetical protein; ABC transporter-like protein 1878095..1878823 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285261 YP_002480143.1 CDS Ddes_1564 NC_011883.1 1878993 1879964 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: amt:Amet_0678 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(1878993..1879964) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285262 YP_002480144.1 CDS Ddes_1565 NC_011883.1 1880689 1883304 R PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dvu:DVU3214 phosphoenolpyruvate synthase-related protein; pyruvate, water dikinase complement(1880689..1883304) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285263 YP_002480145.1 CDS Ddes_1566 NC_011883.1 1883306 1883686 R PFAM: response regulator receiver; KEGG: dvl:Dvul_0173 response regulator receiver protein; response regulator receiver protein complement(1883306..1883686) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285264 YP_002480146.1 CDS Ddes_1567 NC_011883.1 1883844 1885547 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvl:Dvul_0172 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(1883844..1885547) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285265 YP_002480147.1 CDS Ddes_1568 NC_011883.1 1885550 1888159 R PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dvl:Dvul_0151 pyruvate, water dikinase; pyruvate phosphate dikinase complement(1885550..1888159) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285266 YP_002480148.1 CDS Ddes_1569 NC_011883.1 1888702 1890216 R KEGG: dvl:Dvul_2671 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATPase FliI/YscN complement(1888702..1890216) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285267 YP_002480149.1 CDS Ddes_1570 NC_011883.1 1890232 1892154 R KEGG: dvl:Dvul_2670 flagellar assembly protein FliH, putative; hypothetical protein complement(1890232..1892154) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285268 YP_002480150.1 CDS Ddes_1571 NC_011883.1 1892259 1893254 R PFAM: flagellar motor switch protein FliG; KEGG: dvu:DVU0312 flagellar motor switch protein FliG; flagellar motor switch protein FliG complement(1892259..1893254) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285269 YP_002480151.1 CDS Ddes_1573 NC_011883.1 1893496 1895139 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: lip:LI0857 flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar M-ring protein FliF complement(1893496..1895139) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285271 YP_002480152.1 CDS Ddes_1574 NC_011883.1 1895579 1896025 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: dvl:Dvul_2667 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE complement(1895579..1896025) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285272 YP_002480153.1 CDS Ddes_1575 NC_011883.1 1896082 1896519 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: lip:LI0859 flagellar basal body rod protein; flagellar basal-body rod protein FlgC complement(1896082..1896519) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285273 YP_002480154.1 CDS flgB NC_011883.1 1896684 1897097 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB complement(1896684..1897097) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285274 YP_002480155.1 CDS Ddes_1577 NC_011883.1 1897521 1898138 R SMART: ParB domain protein nuclease; KEGG: ppr:PBPRA1349 hypothetical protein; ParB domain-containing protein nuclease complement(1897521..1898138) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285275 YP_002480156.1 CDS Ddes_1578 NC_011883.1 1898128 1898559 R hypothetical protein complement(1898128..1898559) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285276 YP_002480157.1 CDS Ddes_1579 NC_011883.1 1898567 1899757 R PFAM: phosphoadenosine phosphosulfate reductase; KEGG: ppr:PBPRA1348 hypothetical protein; phosphoadenosine phosphosulfate reductase complement(1898567..1899757) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285277 YP_002480158.1 CDS Ddes_1580 NC_011883.1 1900318 1902378 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dvl:Dvul_2346 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1900318..1902378) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285278 YP_002480159.1 CDS Ddes_1581 NC_011883.1 1902488 1902613 D hypothetical protein 1902488..1902613 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285279 YP_002480160.1 CDS Ddes_1582 NC_011883.1 1902874 1903404 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: amr:AM1_2401 exonuclease; Exonuclease RNase T and DNA polymerase III complement(1902874..1903404) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285280 YP_002480161.1 CDS Ddes_1583 NC_011883.1 1903407 1903835 R KEGG: dol:Dole_1637 hypothetical protein; hypothetical protein complement(1903407..1903835) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285281 YP_002480162.1 CDS Ddes_1584 NC_011883.1 1903850 1904254 R PFAM: nuclease (SNase domain protein); KEGG: dvu:DVU1481 nuclease domain-containing protein; nuclease complement(1903850..1904254) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285282 YP_002480163.1 CDS Ddes_1585 NC_011883.1 1904627 1906798 R TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: dvl:Dvul_0675 ferrous iron transport protein B; ferrous iron transport protein B complement(1904627..1906798) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285283 YP_002480164.1 CDS Ddes_1586 NC_011883.1 1907462 1907737 R KEGG: dvl:Dvul_2677 hypothetical protein; hypothetical protein complement(1907462..1907737) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285284 YP_002480165.1 CDS trpA NC_011883.1 1908136 1908903 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1908136..1908903) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285285 YP_002480166.1 CDS Ddes_1588 NC_011883.1 1908906 1910096 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1908906..1910096) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285286 YP_002480167.1 CDS Ddes_1589 NC_011883.1 1910093 1910728 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: amu:Amuc_1534 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase complement(1910093..1910728) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285287 YP_002480168.1 CDS Ddes_1590 NC_011883.1 1910718 1911599 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: amu:Amuc_1533 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase complement(1910718..1911599) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285288 YP_002480169.1 CDS Ddes_1591 NC_011883.1 1911589 1913181 R TIGRFAM: anthranilate phosphoribosyltransferase; glutamine amidotransferase of anthranilate synthase; PFAM: glycosyl transferase family 3; glutamine amidotransferase class-I; Glycosyl transferase, family 3-like; KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase complement(1911589..1913181) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285289 YP_002480170.1 CDS Ddes_1592 NC_011883.1 1913162 1914616 R PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: dvu:DVU0465 anthranilate synthase, component I; anthranilate synthase complement(1913162..1914616) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285290 YP_002480171.1 CDS Ddes_1593 NC_011883.1 1915042 1917234 R PFAM: glutamine synthetase catalytic region; KEGG: dvl:Dvul_1805 glutamine synthetase, catalytic region; glutamine synthetase complement(1915042..1917234) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285291 YP_002480172.1 CDS Ddes_1594 NC_011883.1 1917382 1917804 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dvl:Dvul_0677 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(1917382..1917804) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285292 YP_002480173.1 CDS Ddes_1595 NC_011883.1 1918085 1919362 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dvu:DVU2566 diaminopimelate decarboxylase; diaminopimelate decarboxylase 1918085..1919362 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285293 YP_002480174.1 CDS Ddes_1596 NC_011883.1 1919650 1920966 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dvu:DVU2555 MATE efflux family protein; MATE efflux family protein 1919650..1920966 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285294 YP_002480175.1 CDS Ddes_1597 NC_011883.1 1921020 1921913 D KEGG: dvu:DVU2554 hypothetical protein; hypothetical protein 1921020..1921913 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285295 YP_002480176.1 CDS Ddes_1598 NC_011883.1 1922081 1922413 D PFAM: protein of unknown function UPF0060; KEGG: spe:Spro_2289 hypothetical protein; hypothetical protein 1922081..1922413 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285296 YP_002480177.1 CDS Ddes_1599 NC_011883.1 1922758 1924137 D PFAM: NLP/P60 protein; KEGG: dvl:Dvul_2088 NLP/P60 protein; NLP/P60 protein 1922758..1924137 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285298 YP_002480178.1 CDS Ddes_1600 NC_011883.1 1924134 1925711 D TIGRFAM: dephospho-CoA kinase; pseudouridine synthase, RluA family; PFAM: Dephospho-CoA kinase; RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dvl:Dvul_1969 RluA family pseudouridine synthase; RluA family pseudouridine synthase 1924134..1925711 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285299 YP_002480179.1 CDS Ddes_1601 NC_011883.1 1925975 1928032 D KEGG: mgm:Mmc1_2222 PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: GAF domain protein; GAF sensor hybrid histidine kinase 1925975..1928032 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285300 YP_002480180.1 CDS Ddes_1602 NC_011883.1 1928068 1928556 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dsy:DSY4980 hypothetical protein; ybaK/ebsC protein 1928068..1928556 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285301 YP_002480181.1 CDS Ddes_1604 NC_011883.1 1929095 1930153 D hypothetical protein 1929095..1930153 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285303 YP_002480182.1 CDS Ddes_1605 NC_011883.1 1930150 1932138 D KEGG: bcy:Bcer98_3040 molecular chaperone DnaK; Molecular chaperone-like protein 1930150..1932138 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285304 YP_002480183.1 CDS Ddes_1606 NC_011883.1 1932364 1933032 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: hiq:CGSHiGG_00130 Sel1 domain-containing protein; Sel1 domain-containing protein complement(1932364..1933032) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285305 YP_002480184.1 CDS Ddes_1607 NC_011883.1 1933532 1934110 D KEGG: hypothetical protein; hypothetical protein 1933532..1934110 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285306 YP_002480185.1 CDS Ddes_1608 NC_011883.1 1934137 1934412 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: tcx:Tcr_1103 excinuclease ABC subunit C; excinuclease ABC C subunit domain-containing protein 1934137..1934412 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285307 YP_002480186.1 CDS Ddes_1609 NC_011883.1 1934406 1935038 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pca:Pcar_0784 amino acid efflux/transport protein; lysine exporter protein LysE/YggA 1934406..1935038 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285308 YP_002480187.1 CDS Ddes_1610 NC_011883.1 1935300 1935878 D PFAM: protein of unknown function DUF177; KEGG: dvl:Dvul_1847 hypothetical protein; hypothetical protein 1935300..1935878 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285309 YP_002480188.1 CDS rpmF NC_011883.1 1936142 1936324 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1936142..1936324 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285310 YP_002480189.1 CDS Ddes_1612 NC_011883.1 1936324 1937358 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1936324..1937358 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285311 YP_002480190.1 CDS Ddes_1613 NC_011883.1 1937374 1938360 D KEGG: dvl:Dvul_1850 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 1937374..1938360 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285312 YP_002480191.1 CDS Ddes_1614 NC_011883.1 1938647 1939408 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dvu:DVU1206 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1938647..1939408 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285313 YP_002480192.1 CDS acpP NC_011883.1 1939721 1939954 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1939721..1939954 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285314 YP_002480193.1 CDS Ddes_1616 NC_011883.1 1940026 1941276 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: dvl:Dvul_1853 beta-ketoacyl synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 1940026..1941276 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285315 YP_002480194.1 CDS glyA NC_011883.1 1941675 1942919 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1941675..1942919 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285316 YP_002480195.1 CDS Ddes_1618 NC_011883.1 1943357 1943833 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dvl:Dvul_1855 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase 1943357..1943833 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285317 YP_002480196.1 CDS Ddes_1619 NC_011883.1 1943836 1944993 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: dvl:Dvul_1856 riboflavin biosynthesis protein RibD; riboflavin biosynthesis protein RibD 1943836..1944993 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285318 YP_002480197.1 CDS Ddes_1620 NC_011883.1 1945000 1945674 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1945000..1945674 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285319 YP_002480198.1 CDS ribH NC_011883.1 1945868 1946338 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1945868..1946338 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285320 YP_002480199.1 CDS Ddes_1622 NC_011883.1 1946342 1946836 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dvl:Dvul_1860 NusB antitermination factor; NusB antitermination factor 1946342..1946836 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285321 YP_002480200.1 CDS leuS NC_011883.1 1946850 1949363 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1946850..1949363 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285322 YP_002480201.1 CDS Ddes_1624 NC_011883.1 1949646 1950686 D PFAM: DNA polymerase III delta; KEGG: dvl:Dvul_1863 DNA polymerase III, delta; DNA polymerase III delta 1949646..1950686 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285323 YP_002480202.1 CDS Ddes_1625 NC_011883.1 1950793 1951482 D PFAM: DNA repair protein RadC; KEGG: dvl:Dvul_1864 DNA repair protein RadC; DNA repair protein RadC 1950793..1951482 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285324 YP_002480203.1 CDS Ddes_1626 NC_011883.1 1951500 1954142 D KEGG: dvu:DVU1191 ATP-dependent protease La, putative; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1951500..1954142 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285325 YP_002480204.1 CDS Ddes_1627 NC_011883.1 1954148 1955065 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: dvu:DVU2916 HemK protein; HemK family modification methylase 1954148..1955065 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285326 YP_002480205.1 CDS Ddes_1628 NC_011883.1 1955853 1957046 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1955853..1957046 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285330 YP_002480206.1 CDS rpmG NC_011883.1 1957051 1957200 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1957051..1957200 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285331 YP_002480207.1 CDS secE NC_011883.1 1957342 1957581 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1957342..1957581 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285333 YP_002480208.1 CDS Ddes_1631 NC_011883.1 1957590 1958162 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: dvl:Dvul_0444 NusG antitermination factor; NusG antitermination factor 1957590..1958162 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285334 YP_002480209.1 CDS rplK NC_011883.1 1958337 1958759 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1958337..1958759 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285335 YP_002480210.1 CDS rplA NC_011883.1 1958939 1959646 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1958939..1959646 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285336 YP_002480211.1 CDS rplJ NC_011883.1 1959813 1960337 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1959813..1960337 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285337 YP_002480212.1 CDS rplL NC_011883.1 1960389 1960775 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1960389..1960775 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285338 YP_002480213.1 CDS rpoB NC_011883.1 1961243 1965379 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1961243..1965379 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285339 YP_002480214.1 CDS Ddes_1637 NC_011883.1 1965501 1969670 D KEGG: dvl:Dvul_0438 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 1965501..1969670 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285340 YP_002480215.1 CDS Ddes_1638 NC_011883.1 1969956 1970891 R KEGG: dvl:Dvul_2821 hypothetical protein; hypothetical protein complement(1969956..1970891) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285341 YP_002480216.1 CDS Ddes_1639 NC_011883.1 1971089 1971403 R hypothetical protein complement(1971089..1971403) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285342 YP_002480217.1 CDS Ddes_1640 NC_011883.1 1971469 1972062 R KEGG: dvl:Dvul_2819 putative lipoprotein; putative lipoprotein complement(1971469..1972062) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285343 YP_002480218.1 CDS Ddes_1641 NC_011883.1 1972076 1973140 R PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_2818 hypothetical protein; hypothetical protein complement(1972076..1973140) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285344 YP_002480219.1 CDS Ddes_1642 NC_011883.1 1973151 1973453 R KEGG: dvl:Dvul_2817 hypothetical protein; hypothetical protein complement(1973151..1973453) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285345 YP_002480220.1 CDS Ddes_1643 NC_011883.1 1973699 1976656 D PFAM: sigma-54 factor interaction domain-containing protein; histidine kinase HAMP region domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvu:DVU0151 HAMP domain/sigma-54 interaction domain-containing protein; sigma 54 interacting domain-containing protein 1973699..1976656 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285346 YP_002480221.1 CDS Ddes_1644 NC_011883.1 1976692 1979253 D PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dvl:Dvul_2815 pyruvate, water dikinase; pyruvate phosphate dikinase 1976692..1979253 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285347 YP_002480222.1 CDS Ddes_1645 NC_011883.1 1979324 1980586 D PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_2013 major facilitator superfamily MFS_1; major facilitator superfamily protein 1979324..1980586 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285348 YP_002480223.1 CDS Ddes_1646 NC_011883.1 1980898 1981527 D SMART: Rhodanese domain protein; KEGG: rba:RB11225 hypothetical protein; rhodanese domain-containing protein 1980898..1981527 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285349 YP_002480224.1 CDS Ddes_1647 NC_011883.1 1981686 1982555 D PFAM: beta-lactamase domain protein; KEGG: reh:H16_A1980 hydroxyacylglutathione hydrolase; beta-lactamase domain-containing protein 1981686..1982555 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285350 YP_002480225.1 CDS Ddes_1648 NC_011883.1 1982715 1983221 D PFAM: membrane protein of unknown function UCP014873; KEGG: lip:LI0059 hypothetical protein; hypothetical protein 1982715..1983221 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285351 YP_002480226.1 CDS Ddes_1649 NC_011883.1 1983925 1985022 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rru:Rru_A0144 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1983925..1985022 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285352 YP_002480227.1 CDS Ddes_1650 NC_011883.1 1985402 1987678 D KEGG: ypy:YPK_3070 hypothetical protein; hypothetical protein 1985402..1987678 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285353 YP_002480228.1 CDS Ddes_1651 NC_011883.1 1987671 1988273 D KEGG: sfu:Sfum_2049 hypothetical protein; hypothetical protein 1987671..1988273 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285354 YP_002480229.1 CDS Ddes_1652 NC_011883.1 1988384 1988692 R KEGG: pca:Pcar_0858 hypothetical protein; hypothetical protein complement(1988384..1988692) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285355 YP_002480230.1 CDS Ddes_1653 NC_011883.1 1988967 1989509 R KEGG: dvl:Dvul_2727 hypothetical protein; hypothetical protein complement(1988967..1989509) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285356 YP_002480231.1 CDS Ddes_1654 NC_011883.1 1989812 1991062 R PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_2726 hypothetical protein; hypothetical protein complement(1989812..1991062) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285357 YP_002480232.1 CDS Ddes_1655 NC_011883.1 1991142 1992659 R KEGG: mgm:Mmc1_3622 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N complement(1991142..1992659) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285358 YP_002480233.1 CDS Ddes_1656 NC_011883.1 1992682 1994169 R KEGG: tye:THEYE_A0920 NADH-quinone oxidoreductase chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(1992682..1994169) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285359 YP_002480234.1 CDS Ddes_1657 NC_011883.1 1994188 1996116 R KEGG: tye:THEYE_A0919 NADH-quinone oxidoreductase chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(1994188..1996116) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285360 YP_002480235.1 CDS Ddes_1658 NC_011883.1 1996119 1996421 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ret:RHE_CH03730 NADH-ubiquinone oxidoreductase chain K protein; NADH-ubiquinone oxidoreductase chain 4L complement(1996119..1996421) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285361 YP_002480236.1 CDS Ddes_1659 NC_011883.1 1996418 1997062 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: tye:THEYE_A1120 NADH-quinone oxidoreductase chain J; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(1996418..1997062) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285362 YP_002480237.1 CDS Ddes_1660 NC_011883.1 1997168 1997872 R TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tye:THEYE_A1124 NADH-quinone oxidoreductase, chain I subfamily, putative; NADH-quinone oxidoreductase subunit I complement(1997168..1997872) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285363 YP_002480238.1 CDS Ddes_1661 NC_011883.1 1997930 1998898 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tye:THEYE_A0915 NADH-quinone oxidoreductase chain H; NADH dehydrogenase (quinone) complement(1997930..1998898) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285364 YP_002480239.1 CDS Ddes_1662 NC_011883.1 1998980 2000131 R KEGG: tye:THEYE_A0914 NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase I subunit D complement(1998980..2000131) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285365 YP_002480240.1 CDS Ddes_1663 NC_011883.1 2000298 2000858 R TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: tye:THEYE_A1122 NADH-quinone oxidoreductase chain c 2; NADH (or F420H2) dehydrogenase subunit C complement(2000298..2000858) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285366 YP_002480241.1 CDS Ddes_1664 NC_011883.1 2000840 2001391 R KEGG: tye:THEYE_A1126 NADH-quinone oxidoreductase chain b 2; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit B complement(2000840..2001391) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285367 YP_002480242.1 CDS Ddes_1665 NC_011883.1 2001379 2001753 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: gbm:Gbem_3926 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(2001379..2001753) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285368 YP_002480243.1 CDS Ddes_1666 NC_011883.1 2001909 2002415 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tye:THEYE_A1127 anaerobic dimethyl sulfoxide reductase chain B; 4Fe-4S ferredoxin complement(2001909..2002415) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285369 YP_002480244.1 CDS Ddes_1667 NC_011883.1 2002500 2004614 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dvl:Dvul_2794 molybdopterin oxidoreductase; Formate dehydrogenase complement(2002500..2004614) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285370 YP_002480245.1 CDS Ddes_1668 NC_011883.1 2005802 2006203 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2506 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(2005802..2006203) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285371 YP_002480246.1 CDS Ddes_1669 NC_011883.1 2006207 2007289 R PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dvl:Dvul_2505 NADH dehydrogenase (ubiquinone); NADH-ubiquinone oxidoreductase chain 49kDa complement(2006207..2007289) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285372 YP_002480247.1 CDS Ddes_1670 NC_011883.1 2007286 2007753 R PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dvl:Dvul_2504 ech hydrogenase, subunit EchD, putative; NADH dehydrogenase (ubiquinone) 30 kDa subunit complement(2007286..2007753) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285373 YP_002480248.1 CDS Ddes_1671 NC_011883.1 2007772 2008329 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dvl:Dvul_2503 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(2007772..2008329) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285374 YP_002480249.1 CDS Ddes_1672 NC_011883.1 2008342 2009193 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dvl:Dvul_2502 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 complement(2008342..2009193) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285375 YP_002480250.1 CDS Ddes_1673 NC_011883.1 2009193 2011148 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dvl:Dvul_2501 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(2009193..2011148) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285376 YP_002480251.1 CDS Ddes_1674 NC_011883.1 2011822 2013303 D KEGG: cdf:CD2965 putative signaling protein; putative diguanylate cyclase 2011822..2013303 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285377 YP_002480252.1 CDS Ddes_1675 NC_011883.1 2013534 2014082 D PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY1929 acetyltransferase; N-acetyltransferase GCN5 2013534..2014082 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285378 YP_002480253.1 CDS Ddes_1676 NC_011883.1 2014197 2015216 D TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: mmw:Mmwyl1_1976 ornithine carbamoyltransferase; ornithine carbamoyltransferase 2014197..2015216 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285379 YP_002480254.1 CDS Ddes_1677 NC_011883.1 2016004 2017755 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase A 2016004..2017755 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285381 YP_002480255.1 CDS Ddes_1678 NC_011883.1 2017809 2019887 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cbt:CLH_0916 K+-transporting ATPase, B subunit; K+-transporting ATPase subunit B 2017809..2019887 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285382 YP_002480256.1 CDS Ddes_1679 NC_011883.1 2019897 2020553 D PFAM: K transporting ATPase KdpC subunit; KEGG: cbt:CLH_0917 K+-transporting ATPase, C subunit; Potassium-transporting ATPase 2019897..2020553 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285383 YP_002480257.1 CDS Ddes_1680 NC_011883.1 2020588 2023473 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; KEGG: ckl:CKL_1469 hypothetical protein; osmosensitive K+ channel signal transduction histidine kinase 2020588..2023473 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285384 YP_002480258.1 CDS Ddes_1681 NC_011883.1 2023476 2024219 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbt:CLH_0919 KDP operon transcriptional regulatory protein KdpE; winged helix family two component transcriptional regulator 2023476..2024219 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285385 YP_002480259.1 CDS Ddes_1683 NC_011883.1 2026759 2027553 D PFAM: inositol monophosphatase; KEGG: smd:Smed_5476 histidinol-phosphate phosphatase, putative; inositol-phosphate phosphatase 2026759..2027553 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285387 YP_002480260.1 CDS Ddes_1684 NC_011883.1 2027589 2028857 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: spe:Spro_0134 regulatory protein UhpC; major facilitator superfamily protein 2027589..2028857 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285388 YP_002480261.1 CDS Ddes_1685 NC_011883.1 2029043 2029930 D PFAM: dihydrodipicolinate synthetase; KEGG: rle:RL4484 putative dihydrodipicolinate synthase; dihydrodipicolinate synthetase 2029043..2029930 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285389 YP_002480262.1 CDS Ddes_1686 NC_011883.1 2030005 2031210 D PFAM: FAD dependent oxidoreductase; KEGG: bce:BC2836 sarcosine oxidase beta subunit; FAD dependent oxidoreductase 2030005..2031210 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285390 YP_002480263.1 CDS Ddes_1687 NC_011883.1 2031222 2031530 D KEGG: dps:DP2247 hypothetical protein; hypothetical protein 2031222..2031530 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285391 YP_002480264.1 CDS Ddes_1688 NC_011883.1 2031523 2032911 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cti:RALTA_B1296 opine oxidase subunit A; pyridine nucleotide-disulphide oxidoreductase; BFD (2Fe-2S)-binding domain-containing protein 2031523..2032911 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285392 YP_002480265.1 CDS Ddes_1689 NC_011883.1 2033094 2034596 D PFAM: Aldehyde Dehydrogenase; KEGG: bph:Bphy_6864 aldehyde dehydrogenase; aldehyde dehydrogenase 2033094..2034596 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285393 YP_002480266.1 CDS Ddes_1690 NC_011883.1 2034668 2035675 D PFAM: proline racemase; KEGG: cdf:CD3237 putative proline racemase; proline racemase 2034668..2035675 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285394 YP_002480267.1 CDS Ddes_1691 NC_011883.1 2035856 2037424 D PFAM: amino acid permease-associated region; KEGG: spe:Spro_1836 amino acid permease-associated region; amino acid permease-associated protein 2035856..2037424 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285395 YP_002480268.1 CDS Ddes_1692 NC_011883.1 2043378 2043980 R KEGG: gsu:GSU1208 hypothetical protein; hypothetical protein complement(2043378..2043980) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285402 YP_002480269.1 CDS Ddes_1693 NC_011883.1 2044016 2045575 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(2044016..2045575) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285403 YP_002480270.1 CDS Ddes_1694 NC_011883.1 2045990 2046262 R KEGG: dvl:Dvul_0586 hypothetical protein; hypothetical protein complement(2045990..2046262) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285405 YP_002480271.1 CDS Ddes_1695 NC_011883.1 2046269 2046514 R KEGG: dvl:Dvul_0587 hypothetical protein; hypothetical protein complement(2046269..2046514) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285406 YP_002480272.1 CDS glmU NC_011883.1 2046769 2048124 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(2046769..2048124) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285407 YP_002480273.1 CDS Ddes_1697 NC_011883.1 2048365 2049465 R PFAM: glycosyl transferase family 2; KEGG: ana:alr3062 probable glycosyl transferase; family 2 glycosyl transferase complement(2048365..2049465) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285408 YP_002480274.1 CDS Ddes_1698 NC_011883.1 2049814 2050224 R PFAM: OsmC family protein; KEGG: fjo:Fjoh_2380 OsmC family protein; OsmC family protein complement(2049814..2050224) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285409 YP_002480275.1 CDS Ddes_1699 NC_011883.1 2050301 2050882 R PFAM: protein of unknown function DUF204; KEGG: dvl:Dvul_0455 hypothetical protein; hypothetical protein complement(2050301..2050882) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285410 YP_002480276.1 CDS Ddes_1700 NC_011883.1 2051140 2052219 D hypothetical protein 2051140..2052219 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285411 YP_002480277.1 CDS Ddes_1701 NC_011883.1 2052285 2052824 D hypothetical protein 2052285..2052824 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285412 YP_002480278.1 CDS Ddes_1702 NC_011883.1 2053262 2053429 D hypothetical protein 2053262..2053429 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285413 YP_002480279.1 CDS Ddes_1703 NC_011883.1 2053680 2056376 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pap:PSPA7_5544 magnesium ABC transporter ATPase; magnesium-translocating P-type ATPase 2053680..2056376 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285414 YP_002480280.1 CDS Ddes_1704 NC_011883.1 2056583 2056930 R KEGG: dvl:Dvul_2198 hypothetical protein; hypothetical protein complement(2056583..2056930) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285415 YP_002480281.1 CDS Ddes_1705 NC_011883.1 2057212 2058834 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pnu:Pnuc_1088 thiamine pyrophosphate binding domain-containing protein; thiamine pyrophosphate domain-containing TPP-binding protein 2057212..2058834 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285416 YP_002480282.1 CDS Ddes_1706 NC_011883.1 2058897 2059841 D PFAM: Auxin Efflux Carrier; KEGG: lip:LI0107 permease; auxin efflux carrier 2058897..2059841 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285417 YP_002480283.1 CDS Ddes_1707 NC_011883.1 2060137 2062884 R KEGG: lip:LI0837 hypothetical protein; hypothetical protein complement(2060137..2062884) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285418 YP_002480284.1 CDS Ddes_1708 NC_011883.1 2062971 2063336 D KEGG: dvl:Dvul_1026 hypothetical protein; hypothetical protein 2062971..2063336 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285419 YP_002480285.1 CDS Ddes_1709 NC_011883.1 2063734 2066310 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2063734..2066310 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285420 YP_002480286.1 CDS Ddes_1710 NC_011883.1 2066733 2068025 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dvl:Dvul_1804 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(2066733..2068025) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285421 YP_002480287.1 CDS Ddes_1711 NC_011883.1 2068214 2070598 R KEGG: dvu:DVU1284 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' complement(2068214..2070598) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285422 YP_002480288.1 CDS Ddes_1712 NC_011883.1 2070797 2071669 R PFAM: Nucleotidyl transferase; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU; nucleotidyl transferase complement(2070797..2071669) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285423 YP_002480289.1 CDS glmM NC_011883.1 2071735 2073087 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2071735..2073087) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285424 YP_002480290.1 CDS Ddes_1714 NC_011883.1 2073147 2074079 R PFAM: YbbR family protein; KEGG: dvl:Dvul_1784 YbbR family protein; hypothetical protein complement(2073147..2074079) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285425 YP_002480291.1 CDS Ddes_1715 NC_011883.1 2074066 2074905 R PFAM: protein of unknown function DUF147; KEGG: dvl:Dvul_1785 hypothetical protein; hypothetical protein complement(2074066..2074905) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285426 YP_002480292.1 CDS Ddes_1716 NC_011883.1 2075280 2076182 R KEGG: dvl:Dvul_1786 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(2075280..2076182) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285427 YP_002480293.1 CDS Ddes_1717 NC_011883.1 2076182 2078212 R KEGG: dvl:Dvul_1787 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(2076182..2078212) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285428 YP_002480294.1 CDS Ddes_1718 NC_011883.1 2078752 2079936 R KEGG: dvu:DVU2801 hypothetical protein; hypothetical protein complement(2078752..2079936) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285430 YP_002480295.1 CDS Ddes_1719 NC_011883.1 2080268 2080912 D PFAM: regulatory protein GntR HTH; KEGG: bxe:Bxe_A4447 GntR family transcriptional regulator; GntR family transcriptional regulator 2080268..2080912 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285431 YP_002480296.1 CDS Ddes_1720 NC_011883.1 2080909 2081220 D hypothetical protein 2080909..2081220 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285432 YP_002480297.1 CDS Ddes_1721 NC_011883.1 2081254 2082657 D KEGG: dvl:Dvul_0510 amino acid transporter, AAT family; amino acid transporter 2081254..2082657 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285433 YP_002480298.1 CDS Ddes_1722 NC_011883.1 2082677 2083825 D KEGG: sfu:Sfum_3609 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2082677..2083825 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285434 YP_002480299.1 CDS Ddes_1723 NC_011883.1 2083915 2085762 D PFAM: cobalamin synthesis protein P47K; KEGG: sfu:Sfum_3612 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 2083915..2085762 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285435 YP_002480300.1 CDS Ddes_1724 NC_011883.1 2086446 2086640 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dvl:Dvul_1701 twin arginine-targeting protein translocase; twin-arginine translocation protein, TatA/E family subunit complement(2086446..2086640) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285436 YP_002480301.1 CDS Ddes_1725 NC_011883.1 2086897 2088684 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dvl:Dvul_0079 DEAD/DEAH box helicase domain-containing protein; DEAD/DEAH box helicase 2086897..2088684 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285437 YP_002480302.1 CDS Ddes_1726 NC_011883.1 2089311 2090183 D TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cch:Cag_0412 putative molybdenum utilization protein ModD; modD protein 2089311..2090183 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285438 YP_002480303.1 CDS Ddes_1727 NC_011883.1 2090290 2090784 R hypothetical protein complement(2090290..2090784) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285439 YP_002480304.1 CDS Ddes_1728 NC_011883.1 2090803 2092248 R KEGG: bac:BamMC406_6510 hypothetical protein; hypothetical protein complement(2090803..2092248) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285440 YP_002480305.1 CDS Ddes_1729 NC_011883.1 2092251 2093243 R PFAM: ATPase associated with various cellular activities AAA_3; KEGG: pca:Pcar_0522 ATPase, AAA superfamily; ATPase complement(2092251..2093243) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285441 YP_002480306.1 CDS Ddes_1730 NC_011883.1 2093445 2096369 R PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_0546 diguanylate cyclase; diguanylate cyclase and serine/threonine protein kinase with TPR repeats complement(2093445..2096369) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285442 YP_002480307.1 CDS Ddes_1731 NC_011883.1 2096783 2097409 D PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0544 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 2096783..2097409 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285443 YP_002480308.1 CDS Ddes_1732 NC_011883.1 2097406 2098101 D PFAM: NADPH-dependent FMN reductase; KEGG: dvu:DVU2767 iron-sulfur flavoprotein, putative; NADPH-dependent FMN reductase 2097406..2098101 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285444 YP_002480309.1 CDS Ddes_1733 NC_011883.1 2098129 2099028 D KEGG: dvu:DVU2768 ComF family protein; ComF family protein 2098129..2099028 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285445 YP_002480310.1 CDS Ddes_1734 NC_011883.1 2099174 2100313 D KEGG: dvl:Dvul_0540 hypothetical protein; hypothetical protein 2099174..2100313 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285446 YP_002480311.1 CDS Ddes_1735 NC_011883.1 2100386 2101222 D PFAM: DNA polymerase beta domain protein region; KEGG: smd:Smed_5877 streptomycin 3''-adenylyltransferase; adenylyltransferase 2100386..2101222 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285447 YP_002480312.1 CDS Ddes_1736 NC_011883.1 2101636 2102562 D PFAM: import inner membrane translocase subunit Tim44; KEGG: dvl:Dvul_0538 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 2101636..2102562 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285448 YP_002480313.1 CDS Ddes_1737 NC_011883.1 2102655 2103050 D PFAM: thioesterase superfamily protein; KEGG: dvl:Dvul_2351 hypothetical protein; thioesterase superfamily protein 2102655..2103050 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285449 YP_002480314.1 CDS Ddes_1738 NC_011883.1 2103612 2103878 D PFAM: zinc finger DksA/TraR C4-type; KEGG: kpe:KPK_3736 C4-type zinc finger protein, DksA/TraR family; hypothetical protein 2103612..2103878 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285450 YP_002480315.1 CDS Ddes_1739 NC_011883.1 2103981 2105315 D KEGG: lip:LI0131 folylpolyglutamate synthase; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2103981..2105315 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285451 YP_002480316.1 CDS Ddes_1740 NC_011883.1 2105308 2106735 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 2105308..2106735 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285452 YP_002480317.1 CDS Ddes_1741 NC_011883.1 2106796 2108181 D catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2106796..2108181 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285453 YP_002480318.1 CDS Ddes_1742 NC_011883.1 2108428 2109198 D KEGG: gbe:GbCGDNIH1_1303 hypothetical protein; hypothetical protein 2108428..2109198 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285454 YP_002480319.1 CDS Ddes_1743 NC_011883.1 2109406 2110647 R PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_1485 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2109406..2110647) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285455 YP_002480320.1 CDS Ddes_1744 NC_011883.1 2111104 2111964 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dvl:Dvul_2305 phosphotransferase domain-containing protein; PHP domain-containing protein complement(2111104..2111964) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285456 YP_002480321.1 CDS Ddes_1745 NC_011883.1 2112098 2112319 D PFAM: protein of unknown function DUF343; KEGG: dvu:DVU0656 hypothetical protein; hypothetical protein 2112098..2112319 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285457 YP_002480322.1 CDS Ddes_1746 NC_011883.1 2112319 2112885 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dvl:Dvul_2300 phosphodiesterase; phosphodiesterase 2112319..2112885 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285458 YP_002480323.1 CDS Ddes_1747 NC_011883.1 2112931 2113662 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2112931..2113662 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285459 YP_002480324.1 CDS Ddes_1748 NC_011883.1 2114466 2116514 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_0401 acetate--CoA ligase; acetate/CoA ligase 2114466..2116514 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285460 YP_002480325.1 CDS Ddes_1749 NC_011883.1 2116652 2117221 R hypothetical protein complement(2116652..2117221) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285461 YP_002480326.1 CDS Ddes_1750 NC_011883.1 2117436 2117684 D PFAM: FeoA family protein; KEGG: dvl:Dvul_0674 FeoA family protein; FeoA family protein 2117436..2117684 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285462 YP_002480327.1 CDS Ddes_1751 NC_011883.1 2117971 2118225 D KEGG: dvl:Dvul_0061 hypothetical protein; hypothetical protein 2117971..2118225 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285463 YP_002480328.1 CDS Ddes_1752 NC_011883.1 2118437 2120593 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dvl:Dvul_0060 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2118437..2120593 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285464 YP_002480329.1 CDS Ddes_1753 NC_011883.1 2120571 2120858 D KEGG: dvl:Dvul_0059 hypothetical protein; hypothetical protein 2120571..2120858 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285465 YP_002480330.1 CDS Ddes_1754 NC_011883.1 2120983 2121300 D hypothetical protein 2120983..2121300 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285466 YP_002480331.1 CDS Ddes_1756 NC_011883.1 2122334 2123494 R PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3715 hypothetical protein; glycosyl transferase family protein complement(2122334..2123494) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285468 YP_002480332.1 CDS Ddes_1757 NC_011883.1 2123494 2124894 R KEGG: dvu:DVU0281 exopolysaccharide biosynthesis protein, putative; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP complement(2123494..2124894) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285469 YP_002480333.1 CDS Ddes_1758 NC_011883.1 2125265 2126008 D PFAM: extracellular solute-binding protein family 3; KEGG: dvl:Dvul_2548 extracellular solute-binding protein; family 3 extracellular solute-binding protein 2125265..2126008 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285470 YP_002480334.1 CDS Ddes_1759 NC_011883.1 2126099 2126791 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2547 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2126099..2126791 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285471 YP_002480335.1 CDS Ddes_1760 NC_011883.1 2126795 2127553 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2546 ABC transporter related; ABC transporter-like protein 2126795..2127553 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285472 YP_002480336.1 CDS Ddes_1761 NC_011883.1 2127555 2128223 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2545 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2127555..2128223 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285473 YP_002480337.1 CDS Ddes_1762 NC_011883.1 2128456 2131554 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD0522 putative signaling protein; diguanylate cyclase/phosphodiesterase 2128456..2131554 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285474 YP_002480338.1 CDS Ddes_1763 NC_011883.1 2131924 2133462 R TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cvi:CV_3093 threonine dehydratase; threonine dehydratase, biosynthetic complement(2131924..2133462) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285475 YP_002480339.1 CDS Ddes_1764 NC_011883.1 2133663 2134361 D KEGG: dvl:Dvul_0475 hypothetical protein; hypothetical protein 2133663..2134361 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285476 YP_002480340.1 CDS Ddes_1765 NC_011883.1 2134430 2134846 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 2134430..2134846 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285477 YP_002480341.1 CDS Ddes_1766 NC_011883.1 2134846 2135628 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 2134846..2135628 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285478 YP_002480342.1 CDS Ddes_1767 NC_011883.1 2135770 2136171 D PFAM: protein of unknown function DUF1078 domain protein; KEGG: dvu:DVU2893 flagellar basal-body rod protein, putative; hypothetical protein 2135770..2136171 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285479 YP_002480343.1 CDS Ddes_1768 NC_011883.1 2136309 2137286 D PFAM: NLP/P60 protein; KEGG: pol:Bpro_2667 peptidace C40 NLP/P60; NLP/P60 protein 2136309..2137286 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285480 YP_002480344.1 CDS Ddes_1769 NC_011883.1 2137606 2138601 D PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dvl:Dvul_1396 glutamyl-tRNA synthetase, class Ic; glutamyl-tRNA synthetase 2137606..2138601 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285481 YP_002480345.1 CDS Ddes_1770 NC_011883.1 2138646 2139098 D KEGG: dps:DP2880 hypothetical protein; hypothetical protein 2138646..2139098 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285482 YP_002480346.1 CDS Ddes_1771 NC_011883.1 2139372 2140652 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sfu:Sfum_1700 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 2139372..2140652 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285484 YP_002480347.1 CDS Ddes_1772 NC_011883.1 2140685 2142634 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sfu:Sfum_0615 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 2140685..2142634 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285485 YP_002480348.1 CDS Ddes_1773 NC_011883.1 2142773 2143828 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: sfu:Sfum_2082 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein complement(2142773..2143828) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285486 YP_002480349.1 CDS Ddes_1774 NC_011883.1 2143842 2144081 R PFAM: thiamineS protein; KEGG: sfu:Sfum_1283 hypothetical protein; sulfur transfer protein ThiS complement(2143842..2144081) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285487 YP_002480350.1 CDS Ddes_1775 NC_011883.1 2144312 2146051 R PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: sfu:Sfum_4079 aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase complement(2144312..2146051) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285488 YP_002480351.1 CDS Ddes_1776 NC_011883.1 2146521 2147180 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU0747 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2146521..2147180) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285489 YP_002480352.1 CDS Ddes_1777 NC_011883.1 2147177 2147872 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2224 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2147177..2147872) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285490 YP_002480353.1 CDS Ddes_1778 NC_011883.1 2147982 2148809 R KEGG: dvu:DVU0745 ABC transporter, periplasmic substrate-binding protein; ABC transporter periplasmic substrate-binding protein complement(2147982..2148809) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285491 YP_002480354.1 CDS Ddes_1779 NC_011883.1 2148991 2149131 D hypothetical protein 2148991..2149131 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285492 YP_002480355.1 CDS Ddes_1780 NC_011883.1 2149184 2150191 R PFAM: TOBE domain protein; KEGG: dvl:Dvul_2790 TOBE domain-containing protein; TOBE domain-containing protein complement(2149184..2150191) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285493 YP_002480356.1 CDS Ddes_1781 NC_011883.1 2150206 2151321 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbt:CLH_2710 putative transcriptional regulator; LacI family transcriptional regulator complement(2150206..2151321) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285494 YP_002480357.1 CDS Ddes_1782 NC_011883.1 2151709 2153082 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cti:RALTA_B1542 shikimate and dehydroshikimate transport protein (putative); MFS family transporter; major facilitator superfamily protein 2151709..2153082 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285495 YP_002480358.1 CDS Ddes_1783 NC_011883.1 2153085 2153915 D PFAM: metallophosphoesterase; KEGG: pst:PSPTO_0490 Ser/Thr protein phosphatase family protein; metallophosphoesterase 2153085..2153915 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285496 YP_002480359.1 CDS Ddes_1784 NC_011883.1 2154248 2154943 R hypothetical protein complement(2154248..2154943) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285497 YP_002480360.1 CDS Ddes_1785 NC_011883.1 2155325 2157388 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2155325..2157388 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285498 YP_002480361.1 CDS Ddes_1786 NC_011883.1 2158061 2158309 D PFAM: helix-turn-helix domain protein; KEGG: xfa:XF1720 hypothetical protein; XRE family transcriptional regulator 2158061..2158309 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285499 YP_002480362.1 CDS Ddes_1787 NC_011883.1 2158687 2161377 D KEGG: sfu:Sfum_1859 hypothetical protein; hypothetical protein 2158687..2161377 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285500 YP_002480363.1 CDS Ddes_1788 NC_011883.1 2161385 2162467 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: sma:SAV_3193 phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 2161385..2162467 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285501 YP_002480364.1 CDS Ddes_1789 NC_011883.1 2162570 2163877 D KEGG: dvl:Dvul_2145 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 2162570..2163877 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285502 YP_002480365.1 CDS rplS NC_011883.1 2163954 2164301 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2163954..2164301 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285503 YP_002480366.1 CDS Ddes_1791 NC_011883.1 2165044 2165736 D PFAM: ribonuclease HII/HIII; KEGG: dvl:Dvul_2147 ribonuclease H; Ribonuclease H 2165044..2165736 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285504 YP_002480367.1 CDS Ddes_1792 NC_011883.1 2165802 2166284 D PFAM: protein of unknown function UPF0102; KEGG: dvl:Dvul_2148 hypothetical protein; hypothetical protein 2165802..2166284 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285505 YP_002480368.1 CDS Ddes_1793 NC_011883.1 2166226 2167077 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvl:Dvul_2149 uroporphyrin-III C/tetrapyrrole methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 2166226..2167077 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285506 YP_002480369.1 CDS Ddes_1794 NC_011883.1 2167186 2167935 D PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dvl:Dvul_2150 PTS system mannose/fructose/sorbose family IID component; PTS system mannose/fructose/sorbose family transporter subunit IID 2167186..2167935 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285507 YP_002480370.1 CDS Ddes_1795 NC_011883.1 2167937 2168335 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: dvl:Dvul_2151 phosphotransferase system, phosphocarrier protein HPr; HPr family phosphocarrier protein 2167937..2168335 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285508 YP_002480371.1 CDS Ddes_1796 NC_011883.1 2168337 2170109 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: dvl:Dvul_2152 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2168337..2170109 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285509 YP_002480372.1 CDS smpB NC_011883.1 2170106 2170561 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2170106..2170561 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285510 YP_002480373.1 CDS Ddes_1798 NC_011883.1 2170805 2173618 D PFAM: ComEC/Rec2-related protein; KEGG: dvu:DVU3257 DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-like protein 2170805..2173618 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285511 YP_002480374.1 CDS Ddes_1799 NC_011883.1 2173895 2174545 D PFAM: NADPH-dependent FMN reductase; KEGG: cbe:Cbei_4970 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2173895..2174545 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285512 YP_002480375.1 CDS Ddes_1800 NC_011883.1 2174868 2175809 R KEGG: dvu:DVU3256 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase complement(2174868..2175809) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285513 YP_002480376.1 CDS Ddes_1801 NC_011883.1 2175945 2176451 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: dvl:Dvul_2144 16S rRNA processing protein RimM; 16S rRNA processing protein RimM complement(2175945..2176451) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285514 YP_002480377.1 CDS Ddes_1802 NC_011883.1 2176485 2176715 R KEGG: dvl:Dvul_2143 hypothetical protein; hypothetical protein complement(2176485..2176715) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285515 YP_002480378.1 CDS rpsP NC_011883.1 2176871 2177110 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2176871..2177110) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285516 YP_002480379.1 CDS Ddes_1804 NC_011883.1 2177229 2178767 R KEGG: dvl:Dvul_2141 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(2177229..2178767) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285517 YP_002480380.1 CDS Ddes_1805 NC_011883.1 2179124 2180581 D KEGG: dvl:Dvul_1949 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 2179124..2180581 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285518 YP_002480381.1 CDS guaA NC_011883.1 2180668 2182203 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2180668..2182203 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285519 YP_002480382.1 CDS Ddes_1807 NC_011883.1 2182213 2182794 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dvl:Dvul_1951 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 2182213..2182794 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285520 YP_002480383.1 CDS Ddes_1808 NC_011883.1 2182791 2184197 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dvl:Dvul_1952 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 2182791..2184197 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285521 YP_002480384.1 CDS Ddes_1809 NC_011883.1 2184194 2184790 D PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dvu:DVU1040 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 2184194..2184790 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285522 YP_002480385.1 CDS Ddes_1810 NC_011883.1 2184790 2185449 D KEGG: dvl:Dvul_1954 putative lipoprotein; putative lipoprotein 2184790..2185449 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285523 YP_002480386.1 CDS Ddes_1811 NC_011883.1 2185446 2186198 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2185446..2186198 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285524 YP_002480387.1 CDS Ddes_1812 NC_011883.1 2186578 2187012 D PFAM: small multidrug resistance protein; KEGG: dvu:DVU3327 SMR family multidrug efflux pump; small multidrug resistance protein 2186578..2187012 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285525 YP_002480388.1 CDS Ddes_1813 NC_011883.1 2187012 2187350 D PFAM: small multidrug resistance protein; KEGG: dvl:Dvul_0064 small multidrug resistance protein; small multidrug resistance protein 2187012..2187350 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285526 YP_002480389.1 CDS Ddes_1814 NC_011883.1 2187499 2188050 D hypothetical protein 2187499..2188050 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285527 YP_002480390.1 CDS Ddes_1815 NC_011883.1 2188126 2188707 R PFAM: Phosphoglycerate mutase; KEGG: pth:PTH_0689 fructose-2,6-bisphosphatase; phosphoglycerate mutase complement(2188126..2188707) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285528 YP_002480391.1 CDS Ddes_1816 NC_011883.1 2188885 2190156 R SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1006 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(2188885..2190156) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285529 YP_002480392.1 CDS Ddes_1817 NC_011883.1 2190153 2191550 R KEGG: pca:Pcar_0226 coenzyme F390 synthetase; coenzyme F390 synthetase complement(2190153..2191550) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285530 YP_002480393.1 CDS Ddes_1818 NC_011883.1 2191547 2193106 R PFAM: Radical SAM domain protein; KEGG: pth:PTH_0684 Fe-S oxidoreductases; radical SAM protein complement(2191547..2193106) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285531 YP_002480394.1 CDS Ddes_1819 NC_011883.1 2193103 2193567 R KEGG: dvl:Dvul_1578 hypothetical protein; hypothetical protein complement(2193103..2193567) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285532 YP_002480395.1 CDS Ddes_1820 NC_011883.1 2193564 2194511 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dvl:Dvul_1577 methyltransferase type 11; type 11 methyltransferase complement(2193564..2194511) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285533 YP_002480396.1 CDS Ddes_1821 NC_011883.1 2194508 2194723 R KEGG: pth:PTH_0681 hypothetical protein; hypothetical protein complement(2194508..2194723) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285534 YP_002480397.1 CDS Ddes_1822 NC_011883.1 2194720 2197128 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dps:DP0269 Fe-S oxidoreductase; hypothetical protein complement(2194720..2197128) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285535 YP_002480398.1 CDS Ddes_1823 NC_011883.1 2197376 2200099 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dvl:Dvul_1574 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(2197376..2200099) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285536 YP_002480399.1 CDS Ddes_1824 NC_011883.1 2200242 2201282 R PFAM: molybdopterin binding domain; KEGG: dvl:Dvul_1573 molybdopterin binding domain-containing protein; molybdopterin binding domain-containing protein complement(2200242..2201282) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285537 YP_002480400.1 CDS Ddes_1825 NC_011883.1 2201586 2201969 D KEGG: dvl:Dvul_0245 putative lipoprotein; putative lipoprotein 2201586..2201969 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285538 YP_002480401.1 CDS Ddes_1826 NC_011883.1 2202054 2203604 D PFAM: polysaccharide export protein; KEGG: dvl:Dvul_0246 polysaccharide export protein; polysaccharide export protein 2202054..2203604 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285539 YP_002480402.1 CDS Ddes_1827 NC_011883.1 2203756 2204445 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: tde:TDE0478 cyclic nucleotide binding domain-containing protein; Crp/Fnr family transcriptional regulator 2203756..2204445 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285540 YP_002480403.1 CDS Ddes_1828 NC_011883.1 2204511 2204852 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: cpy:Cphy_1552 cupin 2 domain-containing protein; cupin 2204511..2204852 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285541 YP_002480404.1 CDS Ddes_1829 NC_011883.1 2204991 2206628 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2204991..2206628 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285542 YP_002480405.1 CDS Ddes_1830 NC_011883.1 2206992 2207846 R KEGG: rxy:Rxyl_2427 hypothetical protein; hypothetical protein complement(2206992..2207846) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285543 YP_002480406.1 CDS Ddes_1831 NC_011883.1 2207888 2209000 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(2207888..2209000) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285544 YP_002480407.1 CDS Ddes_1832 NC_011883.1 2209296 2209802 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0734 hypothetical protein; membrane-bound metal-dependent hydrolase complement(2209296..2209802) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285545 YP_002480408.1 CDS Ddes_1833 NC_011883.1 2209995 2212340 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2209995..2212340) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285546 YP_002480409.1 CDS Ddes_1834 NC_011883.1 2212765 2214744 R KEGG: dvl:Dvul_2077 hypothetical protein; hypothetical protein complement(2212765..2214744) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285547 YP_002480410.1 CDS Ddes_1835 NC_011883.1 2214745 2216664 R KEGG: dvu:DVU0908 iron-sulfur cluster-binding protein, putative; iron-sulfur cluster-binding protein complement(2214745..2216664) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285548 YP_002480411.1 CDS Ddes_1836 NC_011883.1 2216848 2217828 D PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: dvl:Dvul_2074 flagellar motor switch protein FliM; flagellar motor switch protein FliM 2216848..2217828 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285549 YP_002480412.1 CDS Ddes_1837 NC_011883.1 2218045 2218650 R TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: gme:Gmet_0923 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; D,D-heptose 1,7-bisphosphate phosphatase complement(2218045..2218650) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285550 YP_002480413.1 CDS Ddes_1838 NC_011883.1 2218692 2219156 R PFAM: protein of unknown function DUF307; KEGG: dvl:Dvul_1392 hypothetical protein; hypothetical protein complement(2218692..2219156) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285551 YP_002480414.1 CDS Ddes_1839 NC_011883.1 2219335 2220402 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2219335..2220402) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285552 YP_002480415.1 CDS Ddes_1840 NC_011883.1 2220970 2221962 D KEGG: xau:Xaut_4723 SH3 type 3 domain-containing protein; hypothetical protein 2220970..2221962 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285553 YP_002480416.1 CDS Ddes_1841 NC_011883.1 2221964 2222986 D PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_1670 radical SAM domain-containing protein; radical SAM protein 2221964..2222986 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285554 YP_002480417.1 CDS Ddes_1842 NC_011883.1 2222986 2223489 D PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dvu:DVU1403 cob(I)alamin adenosyltransferase; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 2222986..2223489 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285555 YP_002480418.1 CDS Ddes_1843 NC_011883.1 2223591 2224094 D hypothetical protein 2223591..2224094 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285556 YP_002480419.1 CDS Ddes_1844 NC_011883.1 2224358 2225065 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: dvl:Dvul_2204 transport-associated; transport-associated protein complement(2224358..2225065) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285557 YP_002480420.1 CDS Ddes_1845 NC_011883.1 2225083 2226336 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2225083..2226336) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285558 YP_002480421.1 CDS Ddes_1846 NC_011883.1 2227590 2228831 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1203 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2227590..2228831 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285561 YP_002480422.1 CDS Ddes_1847 NC_011883.1 2228845 2229513 D PFAM: protein of unknown function DUF1641; KEGG: dvl:Dvul_1202 hypothetical protein; hypothetical protein 2228845..2229513 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285562 YP_002480423.1 CDS Ddes_1848 NC_011883.1 2229709 2230644 R hypothetical protein complement(2229709..2230644) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285563 YP_002480424.1 CDS Ddes_1849 NC_011883.1 2230887 2231351 D PFAM: adenylate cyclase; KEGG: cth:Cthe_2577 adenylate cyclase; adenylate cyclase 2230887..2231351 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285564 YP_002480425.1 CDS Ddes_1850 NC_011883.1 2231366 2232004 D KEGG: sse:Ssed_0364 hypothetical protein; hypothetical protein 2231366..2232004 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285565 YP_002480426.1 CDS Ddes_1851 NC_011883.1 2232113 2233678 D PFAM: sodium/sulphate symporter; KEGG: sfr:Sfri_3879 sodium/sulphate symporter; sodium/sulfate symporter 2232113..2233678 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285566 YP_002480427.1 CDS Ddes_1852 NC_011883.1 2233716 2234645 D KEGG: xau:Xaut_4178 hypothetical protein; hypothetical protein 2233716..2234645 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285567 YP_002480428.1 CDS Ddes_1853 NC_011883.1 2234670 2235515 D KEGG: sse:Ssed_0371 hypothetical protein; hypothetical protein 2234670..2235515 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285568 YP_002480429.1 CDS Ddes_1854 NC_011883.1 2235741 2236496 D PFAM: Inorganic pyrophosphatase; KEGG: cpb:Cphamn1_1534 inorganic pyrophosphatase; inorganic pyrophosphatase 2235741..2236496 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285569 YP_002480430.1 CDS Ddes_1855 NC_011883.1 2236846 2237772 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: syn:sll0030 cmp operon transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(2236846..2237772) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285570 YP_002480431.1 CDS Ddes_1856 NC_011883.1 2238047 2239678 D KEGG: dvu:DVU0799 hypothetical protein; hypothetical protein 2238047..2239678 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285571 YP_002480432.1 CDS Ddes_1857 NC_011883.1 2239846 2242908 D KEGG: dvu:DVU2747 hypothetical protein; hypothetical protein 2239846..2242908 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285572 YP_002480433.1 CDS Ddes_1858 NC_011883.1 2242975 2243343 D hypothetical protein 2242975..2243343 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285573 YP_002480434.1 CDS Ddes_1860 NC_011883.1 2244362 2245528 D PFAM: glycerate kinase; KEGG: xac:XAC4360 glycerate kinase; glycerate kinase 2244362..2245528 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285575 YP_002480435.1 CDS Ddes_1861 NC_011883.1 2245525 2245827 D hypothetical protein 2245525..2245827 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285576 YP_002480436.1 CDS Ddes_1862 NC_011883.1 2246186 2246827 R PFAM: regulatory protein TetR; KEGG: sma:SAV_1132 TetR family transcriptional regulator; TetR family transcriptional regulator complement(2246186..2246827) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285577 YP_002480437.1 CDS Ddes_1863 NC_011883.1 2246900 2247610 R PFAM: protein of unknown function DUF134; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: chy:CHY_0236 hypothetical protein; hypothetical protein complement(2246900..2247610) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285578 YP_002480438.1 CDS Ddes_1864 NC_011883.1 2247981 2248361 R PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sfu:Sfum_3407 dinitrogenase iron-molybdenum cofactor biosynthesis; dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(2247981..2248361) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285579 YP_002480439.1 CDS Ddes_1865 NC_011883.1 2248375 2249295 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_3408 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase complement(2248375..2249295) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285580 YP_002480440.1 CDS Ddes_1866 NC_011883.1 2249283 2250338 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3409 cobyrinic acid a,c-diamide synthase; 4Fe-4S ferredoxin complement(2249283..2250338) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285581 YP_002480441.1 CDS Ddes_1867 NC_011883.1 2250345 2250695 R PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sfu:Sfum_3410 dinitrogenase iron-molybdenum cofactor biosynthesis; dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(2250345..2250695) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285582 YP_002480442.1 CDS Ddes_1868 NC_011883.1 2250896 2251792 R PFAM: protein of unknown function DUF52; KEGG: dvl:Dvul_0469 hypothetical protein; hypothetical protein complement(2250896..2251792) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285583 YP_002480443.1 CDS Ddes_1869 NC_011883.1 2252063 2253529 R PFAM: Aldehyde Dehydrogenase; KEGG: dac:Daci_0100 succinic semialdehyde dehydrogenase; aldehyde dehydrogenase complement(2252063..2253529) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285584 YP_002480444.1 CDS Ddes_1870 NC_011883.1 2253559 2254821 R KEGG: dvl:Dvul_0463 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type complement(2253559..2254821) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285585 YP_002480445.1 CDS pyrB NC_011883.1 2254818 2255774 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(2254818..2255774) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285586 YP_002480446.1 CDS Ddes_1872 NC_011883.1 2256162 2256959 D PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0529 hypothetical protein; hypothetical protein 2256162..2256959 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285587 YP_002480447.1 CDS Ddes_1873 NC_011883.1 2256986 2257852 D PFAM: protein of unknown function DUF161; KEGG: dvl:Dvul_0531 hypothetical protein; hypothetical protein 2256986..2257852 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285588 YP_002480448.1 CDS Ddes_1874 NC_011883.1 2257861 2259159 D PFAM: amidohydrolase; KEGG: dvu:DVU2900 amidohydrolase family protein; amidohydrolase 2257861..2259159 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285589 YP_002480449.1 CDS Ddes_1875 NC_011883.1 2259842 2260180 D PFAM: Hpt domain protein; KEGG: pmy:Pmen_0835 multi-sensor hybrid histidine kinase; Hpt protein 2259842..2260180 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285590 YP_002480450.1 CDS Ddes_1876 NC_011883.1 2260556 2262925 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dvl:Dvul_0934 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(2260556..2262925) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285591 YP_002480451.1 CDS Ddes_1877 NC_011883.1 2263086 2263283 D PFAM: Heavy metal transport/detoxification protein; KEGG: hmo:HM1_1698 copper ion binding protein, putative; heavy metal transport/detoxification protein 2263086..2263283 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285592 YP_002480452.1 CDS Ddes_1878 NC_011883.1 2263657 2265150 D KEGG: dvl:Dvul_0192 putative lipoprotein; putative lipoprotein 2263657..2265150 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285593 YP_002480453.1 CDS Ddes_1879 NC_011883.1 2265273 2266271 D PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: dvl:Dvul_0226 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 2265273..2266271 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285594 YP_002480454.1 CDS Ddes_1880 NC_011883.1 2267149 2270886 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dvl:Dvul_0969 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2267149..2270886 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285595 YP_002480455.1 CDS Ddes_1881 NC_011883.1 2270883 2271854 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dvl:Dvul_0968 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 2270883..2271854 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285596 YP_002480456.1 CDS Ddes_1882 NC_011883.1 2271865 2272314 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dvl:Dvul_0967 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2271865..2272314 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285597 YP_002480457.1 CDS Ddes_1883 NC_011883.1 2272316 2272894 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0966 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 2272316..2272894 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285598 YP_002480458.1 CDS Ddes_1884 NC_011883.1 2272917 2273453 D PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dvl:Dvul_0965 NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit 2272917..2273453 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285599 YP_002480459.1 CDS Ddes_1885 NC_011883.1 2273450 2274532 D PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dvl:Dvul_0964 NADH dehydrogenase (ubiquinone); NADH dehydrogenase (quinone) 2273450..2274532 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285600 YP_002480460.1 CDS Ddes_1886 NC_011883.1 2274681 2275064 D PFAM: hydrogenase expression/synthesis HypA; KEGG: dvl:Dvul_0963 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 2274681..2275064 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285601 YP_002480461.1 CDS Ddes_1887 NC_011883.1 2275057 2276217 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0962 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 2275057..2276217 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285602 YP_002480462.1 CDS Ddes_1888 NC_011883.1 2276364 2277404 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: hiq:CGSHiGG_00130 Sel1 domain-containing protein; Sel1 domain-containing protein complement(2276364..2277404) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285603 YP_002480463.1 CDS Ddes_1889 NC_011883.1 2277408 2279141 R KEGG: dvl:Dvul_2636 hypothetical protein; hypothetical protein complement(2277408..2279141) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285604 YP_002480464.1 CDS Ddes_1890 NC_011883.1 2279144 2280214 R PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dvl:Dvul_2635 N-acylneuraminate-9-phosphate synthase; N-acetylneuraminate synthase complement(2279144..2280214) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285605 YP_002480465.1 CDS Ddes_1891 NC_011883.1 2280488 2281393 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvu:DVU0947 hypothetical protein; hypothetical protein 2280488..2281393 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285606 YP_002480466.1 CDS Ddes_1892 NC_011883.1 2281427 2282056 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 2281427..2282056 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285607 YP_002480467.1 CDS Ddes_1893 NC_011883.1 2282374 2283342 D KEGG: dvl:Dvul_0671 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2282374..2283342 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285608 YP_002480468.1 CDS Ddes_1894 NC_011883.1 2283576 2284205 R PFAM: SirA family protein; KEGG: dvl:Dvul_1417 hypothetical protein; SirA family protein complement(2283576..2284205) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285609 YP_002480469.1 CDS Ddes_1895 NC_011883.1 2284306 2285985 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: dvl:Dvul_2798 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2284306..2285985 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285610 YP_002480470.1 CDS Ddes_1896 NC_011883.1 2286428 2286820 R KEGG: dvl:Dvul_2922 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator complement(2286428..2286820) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285611 YP_002480471.1 CDS Ddes_1897 NC_011883.1 2287101 2287676 R PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: chy:CHY_2702 glutamine amidotransferase subunit PdxT; SNO glutamine amidotransferase complement(2287101..2287676) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285612 YP_002480472.1 CDS Ddes_1898 NC_011883.1 2287677 2288558 R with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS complement(2287677..2288558) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285613 YP_002480473.1 CDS Ddes_1899 NC_011883.1 2288759 2289598 D KEGG: dvl:Dvul_1698 hypothetical protein; hypothetical protein 2288759..2289598 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285614 YP_002480474.1 CDS Ddes_1900 NC_011883.1 2289595 2290260 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dvl:Dvul_1697 HAD family hydrolase; HAD-superfamily hydrolase 2289595..2290260 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285615 YP_002480475.1 CDS Ddes_1901 NC_011883.1 2290328 2290630 D PFAM: protein of unknown function YGGT; KEGG: dvl:Dvul_1696 protein of unknown function YGGT; hypothetical protein 2290328..2290630 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285616 YP_002480476.1 CDS Ddes_1902 NC_011883.1 2290685 2290915 D KEGG: dvl:Dvul_1693 hypothetical protein; hypothetical protein 2290685..2290915 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285617 YP_002480477.1 CDS Ddes_1903 NC_011883.1 2290937 2292628 D KEGG: dvl:Dvul_1692 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; acetolactate synthase large subunit 2290937..2292628 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285618 YP_002480478.1 CDS ilvH NC_011883.1 2292639 2293130 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2292639..2293130 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285619 YP_002480479.1 CDS Ddes_1905 NC_011883.1 2293546 2294547 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2293546..2294547 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285620 YP_002480480.1 CDS Ddes_1906 NC_011883.1 2295197 2297473 D KEGG: dvl:Dvul_0214 putative CheA signal transduction histidine kinases; hypothetical protein 2295197..2297473 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285621 YP_002480481.1 CDS Ddes_1907 NC_011883.1 2298212 2298382 D KEGG: dvl:Dvul_0213 hypothetical protein; hypothetical protein 2298212..2298382 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285622 YP_002480482.1 CDS Ddes_1908 NC_011883.1 2298383 2299138 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dvl:Dvul_0212 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase 2298383..2299138 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285623 YP_002480483.1 CDS Ddes_1909 NC_011883.1 2299446 2299643 R KEGG: pla:Plav_2460 hypothetical protein; hypothetical protein complement(2299446..2299643) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285624 YP_002480484.1 CDS Ddes_1910 NC_011883.1 2299691 2301004 D TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dvl:Dvul_0210 UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 2299691..2301004 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285625 YP_002480485.1 CDS Ddes_1911 NC_011883.1 2301010 2301786 D PFAM: purine or other phosphorylase family 1; KEGG: dvl:Dvul_0209 hypothetical protein; purine or other phosphorylase family protein 2301010..2301786 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285626 YP_002480486.1 CDS Ddes_1912 NC_011883.1 2301795 2302760 D PFAM: Polyprenyl synthetase; KEGG: dvl:Dvul_0208 trans-hexaprenyltranstransferase; polyprenyl synthetase 2301795..2302760 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285627 YP_002480487.1 CDS Ddes_1913 NC_011883.1 2302786 2305785 D PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dvl:Dvul_0206 phosphoribosylformylglycinamidine synthase; phosphoribosylformylglycinamidine synthase 2302786..2305785 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285628 YP_002480488.1 CDS Ddes_1914 NC_011883.1 2306564 2307163 R KEGG: rpe:RPE_4691 hypothetical protein; hypothetical protein complement(2306564..2307163) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285629 YP_002480489.1 CDS Ddes_1915 NC_011883.1 2307290 2308486 R PFAM: protein of unknown function DUF111; KEGG: dvu:DVU2772 hypothetical protein; hypothetical protein complement(2307290..2308486) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285630 YP_002480490.1 CDS Ddes_1916 NC_011883.1 2308633 2309292 D PFAM: CBS domain containing protein; KEGG: dvl:Dvul_0535 CBS domain-containing protein; hypothetical protein 2308633..2309292 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285631 YP_002480491.1 CDS Ddes_1917 NC_011883.1 2309544 2309861 D TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dvl:Dvul_0534 DsrC family protein; TusE/DsrC/DsvC family sulfur relay protein 2309544..2309861 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285632 YP_002480492.1 CDS Ddes_1918 NC_011883.1 2310197 2312635 D KEGG: dvl:Dvul_2326 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 2310197..2312635 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285633 YP_002480493.1 CDS Ddes_1919 NC_011883.1 2312935 2313843 D PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dvu:DVU3053 hypothetical protein; tRNA methyltransferase complex GCD14 subunit 2312935..2313843 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285634 YP_002480494.1 CDS Ddes_1920 NC_011883.1 2314176 2315147 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: dvu:DVU0481 ADP-L-glycero-D-mannoheptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase complement(2314176..2315147) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285635 YP_002480495.1 CDS Ddes_1921 NC_011883.1 2315299 2315625 D hypothetical protein 2315299..2315625 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285636 YP_002480496.1 CDS Ddes_1922 NC_011883.1 2315618 2316412 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1972 ABC transporter related; ABC transporter-like protein 2315618..2316412 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285637 YP_002480497.1 CDS Ddes_1923 NC_011883.1 2316409 2317572 D PFAM: SufBD protein; KEGG: dvl:Dvul_1973 SufBD protein; SufBD protein 2316409..2317572 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285638 YP_002480498.1 CDS Ddes_1924 NC_011883.1 2318077 2318619 D PFAM: phosphoesterase PA-phosphatase related; KEGG: bte:BTH_II0021 PAP2 family protein; PA-phosphatase-like phosphoesterase 2318077..2318619 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285640 YP_002480499.1 CDS Ddes_1925 NC_011883.1 2318725 2319081 D SMART: regulatory protein ArsR; KEGG: psa:PST_0241 arsenic resistance transcriptional regulator; putative ArsR family transcriptional regulator 2318725..2319081 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285641 YP_002480500.1 CDS Ddes_1926 NC_011883.1 2319185 2320030 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dol:Dole_0762 arsenite S-adenosylmethyltransferase; type 11 methyltransferase 2319185..2320030 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285642 YP_002480501.1 CDS Ddes_1927 NC_011883.1 2320704 2320970 D PFAM: RNP-1 like RNA-binding protein; KEGG: dvl:Dvul_0803 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 2320704..2320970 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285643 YP_002480502.1 CDS secF NC_011883.1 2321186 2322289 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(2321186..2322289) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285644 YP_002480503.1 CDS secD NC_011883.1 2322307 2323887 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(2322307..2323887) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285645 YP_002480504.1 CDS Ddes_1930 NC_011883.1 2324154 2324489 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: dvl:Dvul_1340 preprotein translocase, YajC subunit; preprotein translocase subunit YajC complement(2324154..2324489) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285646 YP_002480505.1 CDS Ddes_1931 NC_011883.1 2324847 2326169 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dvu:DVU1825 amidohydrolase family protein; amidohydrolase 2324847..2326169 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285647 YP_002480506.1 CDS Ddes_1932 NC_011883.1 2326369 2326632 D KEGG: dvl:Dvul_1334 hypothetical protein; hypothetical protein 2326369..2326632 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285648 YP_002480507.1 CDS Ddes_1933 NC_011883.1 2327240 2328481 D catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate; diaminopimelate aminotransferase 2327240..2328481 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285649 YP_002480508.1 CDS Ddes_1934 NC_011883.1 2328474 2330456 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2328474..2330456 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285650 YP_002480509.1 CDS Ddes_1935 NC_011883.1 2330578 2331510 D KEGG: dvl:Dvul_1331 hypothetical protein; hypothetical protein 2330578..2331510 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285651 YP_002480510.1 CDS Ddes_1936 NC_011883.1 2331840 2332955 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: dvl:Dvul_1330 CBS domain-containing protein; hypothetical protein 2331840..2332955 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285652 YP_002480511.1 CDS lnt NC_011883.1 2332952 2334610 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 2332952..2334610 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285653 YP_002480512.1 CDS Ddes_1938 NC_011883.1 2334710 2335823 D KEGG: bpm:BURPS1710b_A1695 hypothetical protein; hypothetical protein join(2334710..2334784,2334786..2335823) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285654 YP_002480513.1 CDS Ddes_1939 NC_011883.1 2335807 2336646 D KEGG: dvu:DVU1862 GGDEF domain-containing protein; putative diguanylate cyclase 2335807..2336646 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285655 YP_002480514.1 CDS Ddes_1940 NC_011883.1 2336646 2337458 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvl:Dvul_1300 flagellar synthesis regulator FleN, putative; Cobyrinic acid ac-diamide synthase 2336646..2337458 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285656 YP_002480515.1 CDS Ddes_1941 NC_011883.1 2337689 2337964 D PFAM: histone family protein DNA-binding protein; KEGG: dvl:Dvul_1299 histone family protein DNA-binding protein; histone family protein DNA-binding protein 2337689..2337964 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285657 YP_002480516.1 CDS Ddes_1942 NC_011883.1 2338080 2338958 D KEGG: dvl:Dvul_1296 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2338080..2338958 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285658 YP_002480517.1 CDS Ddes_1943 NC_011883.1 2339290 2340489 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dvl:Dvul_0825 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(2339290..2340489) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285659 YP_002480518.1 CDS Ddes_1944 NC_011883.1 2340986 2341174 R hypothetical protein complement(2340986..2341174) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285660 YP_002480519.1 CDS Ddes_1945 NC_011883.1 2341683 2344727 R KEGG: dvu:DVU2747 hypothetical protein; hypothetical protein complement(2341683..2344727) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285661 YP_002480520.1 CDS thiH NC_011883.1 2345022 2346413 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH complement(2345022..2346413) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285662 YP_002480521.1 CDS Ddes_1947 NC_011883.1 2346861 2347976 D PFAM: basic membrane lipoprotein; KEGG: tte:TTE0457 surface lipoprotein; basic membrane lipoprotein 2346861..2347976 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285663 YP_002480522.1 CDS Ddes_1948 NC_011883.1 2348242 2349327 D KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 2348242..2349327 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285664 YP_002480523.1 CDS Ddes_1949 NC_011883.1 2349528 2350583 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(2349528..2350583) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285665 YP_002480524.1 CDS Ddes_1950 NC_011883.1 2350958 2351944 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cbe:Cbei_4420 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(2350958..2351944) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285666 YP_002480525.1 CDS Ddes_1951 NC_011883.1 2352438 2352884 R TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: dvu:DVU2680 flavodoxin; flavodoxin complement(2352438..2352884) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285667 YP_002480526.1 CDS Ddes_1952 NC_011883.1 2353158 2354603 R PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_1667 radical SAM domain-containing protein; radical SAM protein complement(2353158..2354603) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285668 YP_002480527.1 CDS Ddes_1953 NC_011883.1 2354690 2355178 D KEGG: fal:FRAAL2262 hypothetical protein; hypothetical protein 2354690..2355178 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285669 YP_002480528.1 CDS Ddes_1954 NC_011883.1 2355368 2356414 R KEGG: dvl:Dvul_1664 hypothetical protein; hypothetical protein complement(2355368..2356414) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285670 YP_002480529.1 CDS Ddes_1955 NC_011883.1 2356535 2359747 D KEGG: dvu:DVU1415 AsmA family protein; hypothetical protein 2356535..2359747 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285671 YP_002480530.1 CDS Ddes_1956 NC_011883.1 2359896 2360567 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2359896..2360567 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285672 YP_002480531.1 CDS Ddes_1957 NC_011883.1 2360702 2361397 D TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: dvl:Dvul_0913 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 2360702..2361397 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285673 YP_002480532.1 CDS Ddes_1958 NC_011883.1 2361462 2362667 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2361462..2362667 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285674 YP_002480533.1 CDS Ddes_1959 NC_011883.1 2362795 2363013 D TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: dvl:Dvul_0951 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 2362795..2363013 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285675 YP_002480534.1 CDS Ddes_1960 NC_011883.1 2363336 2364340 R PFAM: phosphate transporter; KEGG: dvl:Dvul_0952 phosphate transporter; phosphate transporter complement(2363336..2364340) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285676 YP_002480535.1 CDS Ddes_1961 NC_011883.1 2364333 2364962 R KEGG: dvl:Dvul_0953 hypothetical protein; hypothetical protein complement(2364333..2364962) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285677 YP_002480536.1 CDS Ddes_1962 NC_011883.1 2365214 2366695 R PFAM: pseudouridine synthase; KEGG: dvl:Dvul_0578 pseudouridine synthase; pseudouridine synthase complement(2365214..2366695) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285678 YP_002480537.1 CDS Ddes_1963 NC_011883.1 2366696 2367934 R KEGG: dvl:Dvul_1907 protein of unknown function UPF0052 and CofD; hypothetical protein complement(2366696..2367934) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285679 YP_002480538.1 CDS Ddes_1964 NC_011883.1 2367931 2368575 R PFAM: 3'-5' exonuclease; KEGG: dvl:Dvul_1912 3'-5' exonuclease; 3'-5' exonuclease complement(2367931..2368575) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285680 YP_002480539.1 CDS trmE NC_011883.1 2368591 2369997 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2368591..2369997) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285681 YP_002480540.1 CDS Ddes_1966 NC_011883.1 2370808 2372175 R PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein; single-stranded nucleic acid binding R3H domain-containing protein complement(2370808..2372175) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285682 YP_002480541.1 CDS Ddes_1967 NC_011883.1 2372218 2373864 R TIGRFAM: YidC translocase/secretase; PFAM: 60 kDa inner membrane insertion protein; KEGG: dvl:Dvul_1917 60 kDa inner membrane insertion protein; YidC translocase/secretase complement(2372218..2373864) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285683 YP_002480542.1 CDS Ddes_1968 NC_011883.1 2373873 2374136 R PFAM: protein of unknown function DUF37; KEGG: dvl:Dvul_1918 hypothetical protein; hypothetical protein complement(2373873..2374136) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285684 YP_002480543.1 CDS Ddes_1969 NC_011883.1 2374133 2374525 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sat:SYN_01012 ribonuclease P protein component; ribonuclease P protein component complement(2374133..2374525) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285685 YP_002480544.1 CDS Ddes_1970 NC_011883.1 2374568 2374702 R PFAM: ribosomal protein L34; KEGG: hha:Hhal_1228 ribosomal protein L34; 50S ribosomal protein L34 complement(2374568..2374702) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285686 YP_002480545.1 CDS Ddes_1971 NC_011883.1 2375196 2376242 R KEGG: cur:cu1817 putative Fe-S oxidoreductase; hypothetical protein complement(2375196..2376242) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285687 YP_002480546.1 CDS Ddes_1972 NC_011883.1 2376301 2376432 R hypothetical protein complement(2376301..2376432) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285688 YP_002480547.1 CDS aroK NC_011883.1 2376567 2377145 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 2376567..2377145 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285689 YP_002480548.1 CDS Ddes_1974 NC_011883.1 2377153 2377560 D hypothetical protein 2377153..2377560 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285690 YP_002480549.1 CDS Ddes_1975 NC_011883.1 2377684 2378247 R KEGG: dvl:Dvul_1655 hypothetical protein; hypothetical protein complement(2377684..2378247) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285691 YP_002480550.1 CDS Ddes_1976 NC_011883.1 2378325 2379320 R PFAM: OmpA/MotB domain protein; KEGG: lip:LI0902 outer membrane protein; OmpA/MotB domain-containing protein complement(2378325..2379320) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285692 YP_002480551.1 CDS Ddes_1977 NC_011883.1 2379625 2380476 D KEGG: dvl:Dvul_0561 hypothetical protein; hypothetical protein 2379625..2380476 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285693 YP_002480552.1 CDS Ddes_1978 NC_011883.1 2380479 2381948 D PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: dvu:DVU2750 cobalamin biosynthesis protein CbiD; cobalamin (vitamin B12) biosynthesis CbiD protein 2380479..2381948 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285694 YP_002480553.1 CDS Ddes_1979 NC_011883.1 2381945 2383747 D TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvu:DVU2749 precorrin-6Y C5,15-methyltransferase (decarboxylating); precorrin-6y C5,15-methyltransferase subunit CbiE 2381945..2383747 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285695 YP_002480554.1 CDS Ddes_1980 NC_011883.1 2383804 2384667 D KEGG: dvl:Dvul_0559 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 2383804..2384667 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285696 YP_002480555.1 CDS Ddes_1981 NC_011883.1 2385192 2386700 D PFAM: Aldehyde Dehydrogenase; KEGG: cbe:Cbei_0729 aldehyde dehydrogenase; aldehyde dehydrogenase 2385192..2386700 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285697 YP_002480556.1 CDS Ddes_1982 NC_011883.1 2387599 2387877 R hypothetical protein complement(2387599..2387877) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285698 YP_002480557.1 CDS Ddes_1983 NC_011883.1 2388299 2389144 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dvl:Dvul_0767 ferredoxin--NADP(+) reductase subunit alpha; ferredoxin-NADP(+) reductase subunit alpha 2388299..2389144 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285699 YP_002480558.1 CDS Ddes_1984 NC_011883.1 2389134 2390555 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2389134..2390555 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285700 YP_002480559.1 CDS Ddes_1985 NC_011883.1 2390802 2391629 D KEGG: dvu:DVU2490 histidinol phosphatase, putative; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; histidinol phosphate phosphatase protein 2390802..2391629 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285701 YP_002480560.1 CDS Ddes_1986 NC_011883.1 2391728 2393233 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU2491 ABC transporter, ATP-binding protein; ABC transporter-like protein 2391728..2393233 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285702 YP_002480561.1 CDS Ddes_1987 NC_011883.1 2393318 2393986 R PFAM: SNARE associated Golgi protein; KEGG: dvl:Dvul_0575 DedA family protein; hypothetical protein complement(2393318..2393986) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285703 YP_002480562.1 CDS Ddes_1988 NC_011883.1 2394076 2395206 D KEGG: dvl:Dvul_0630 hypothetical protein; hypothetical protein 2394076..2395206 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285704 YP_002480563.1 CDS Ddes_1989 NC_011883.1 2395497 2396078 D KEGG: dvl:Dvul_0629 hypothetical protein; hypothetical protein 2395497..2396078 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285705 YP_002480564.1 CDS Ddes_1990 NC_011883.1 2396250 2396654 D KEGG: lip:LI0797 hypothetical protein; hypothetical protein 2396250..2396654 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285706 YP_002480565.1 CDS Ddes_1991 NC_011883.1 2396971 2399121 R PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvl:Dvul_0340 hypothetical protein; hypothetical protein complement(2396971..2399121) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285707 YP_002480566.1 CDS Ddes_1992 NC_011883.1 2399125 2399757 R PFAM: protein of unknown function DUF162; KEGG: dvl:Dvul_0341 hypothetical protein; hypothetical protein complement(2399125..2399757) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285708 YP_002480567.1 CDS Ddes_1993 NC_011883.1 2399839 2401134 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvl:Dvul_0345 hypothetical protein; hypothetical protein complement(2399839..2401134) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285709 YP_002480568.1 CDS Ddes_1994 NC_011883.1 2401144 2402529 R PFAM: FAD linked oxidase domain protein; KEGG: dvl:Dvul_0346 FAD linked oxidase domain-containing protein; FAD linked oxidase domain-containing protein complement(2401144..2402529) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285710 YP_002480569.1 CDS Ddes_1995 NC_011883.1 2402553 2403815 D KEGG: sequence orphan; hypothetical protein 2402553..2403815 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285711 YP_002480570.1 CDS Ddes_1996 NC_011883.1 2404074 2409083 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: ent:Ent638_0501 outer membrane autotransporter; outer membrane autotransporter barrel domain-containing protein 2404074..2409083 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285712 YP_002480571.1 CDS Ddes_1997 NC_011883.1 2409377 2409961 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: ecm:EcSMS35_2509 putative outer membrane protein; outer membrane chaperone Skp 2409377..2409961 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285713 YP_002480572.1 CDS Ddes_1998 NC_011883.1 2410310 2410810 R binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW complement(2410310..2410810) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285714 YP_002480573.1 CDS Ddes_1999 NC_011883.1 2410789 2411025 R PFAM: carbon storage regulator; KEGG: dvl:Dvul_2420 carbon storage regulator, CsrA; carbon storage regulator CsrA complement(2410789..2411025) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285715 YP_002480574.1 CDS Ddes_2000 NC_011883.1 2411038 2412576 R TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: lip:LI0748 flagellin-like protein; flagellar hook-associated protein 3 complement(2411038..2412576) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285716 YP_002480575.1 CDS Ddes_2001 NC_011883.1 2412744 2414891 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: lip:LI0747 flagellar hook-associated protein; flagellar hook-associated protein FlgK complement(2412744..2414891) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285717 YP_002480576.1 CDS Ddes_2002 NC_011883.1 2414895 2415362 R PFAM: FlgN family protein; KEGG: dvl:Dvul_2423 hypothetical protein; FlgN family protein complement(2414895..2415362) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285718 YP_002480577.1 CDS Ddes_2003 NC_011883.1 2415602 2417284 R PFAM: flagellar protein FlgJ; KEGG: dvl:Dvul_2424 peptidase M23B; flagellar protein FlgJ complement(2415602..2417284) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285719 YP_002480578.1 CDS flgI NC_011883.1 2417285 2418397 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(2417285..2418397) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285720 YP_002480579.1 CDS Ddes_2005 NC_011883.1 2418951 2419274 R PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: dvl:Dvul_2418 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM complement(2418951..2419274) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285721 YP_002480580.1 CDS Ddes_2006 NC_011883.1 2419318 2419767 R KEGG: dvl:Dvul_2417 hypothetical protein; hypothetical protein complement(2419318..2419767) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285722 YP_002480581.1 CDS Ddes_2007 NC_011883.1 2420197 2421576 R PFAM: major facilitator superfamily MFS_1; KEGG: dvl:Dvul_2415 major facilitator superfamily transporter; major facilitator superfamily protein complement(2420197..2421576) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285723 YP_002480582.1 CDS Ddes_2008 NC_011883.1 2421703 2422602 R PFAM: methylenetetrahydrofolate reductase; KEGG: dvl:Dvul_1992 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase complement(2421703..2422602) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285724 YP_002480583.1 CDS Ddes_2009 NC_011883.1 2422918 2424207 D KEGG: dvu:DVU0996 hypothetical protein; hypothetical protein 2422918..2424207 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285725 YP_002480584.1 CDS Ddes_2010 NC_011883.1 2424611 2424991 D TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dvl:Dvul_0204 desulfoferrodoxin; desulfoferrodoxin 2424611..2424991 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285726 YP_002480585.1 CDS Ddes_2011 NC_011883.1 2425060 2425197 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: emi:Emin_0014 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2425060..2425197 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285727 YP_002480586.1 CDS Ddes_2012 NC_011883.1 2425297 2426505 D PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dvl:Dvul_0202 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 2425297..2426505 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285728 YP_002480587.1 CDS Ddes_2013 NC_011883.1 2426734 2427120 R PFAM: cytochrome c class III; KEGG: dvl:Dvul_0215 cytochrome c, class III; cytochrome c class III complement(2426734..2427120) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285729 YP_002480588.1 CDS Ddes_2014 NC_011883.1 2427232 2427993 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvu:DVU3170 precorrin-3b C17-methyltransferase; precorrin-3B C(17)-methyltransferase complement(2427232..2427993) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285730 YP_002480589.1 CDS Ddes_2015 NC_011883.1 2427990 2429264 R PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dvl:Dvul_0217 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis protein CbiG complement(2427990..2429264) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285731 YP_002480590.1 CDS Ddes_2016 NC_011883.1 2429219 2429446 R hypothetical protein complement(2429219..2429446) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285732 YP_002480591.1 CDS Ddes_2017 NC_011883.1 2429531 2430802 R TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dvl:Dvul_0218 glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde-2,1-aminomutase complement(2429531..2430802) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285733 YP_002480592.1 CDS Ddes_2018 NC_011883.1 2430942 2431421 R KEGG: dvl:Dvul_0219 AsnC family transcriptional regulator; putative AsnC family transcriptional regulator complement(2430942..2431421) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285734 YP_002480593.1 CDS Ddes_2019 NC_011883.1 2431551 2432105 R KEGG: dvl:Dvul_0805 hypothetical protein; hypothetical protein complement(2431551..2432105) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285735 YP_002480594.1 CDS Ddes_2020 NC_011883.1 2432885 2433151 R PFAM: RNP-1 like RNA-binding protein; KEGG: dvl:Dvul_0803 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein complement(2432885..2433151) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285736 YP_002480595.1 CDS Ddes_2021 NC_011883.1 2434210 2435736 R TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: dvu:DVU0959 replicative DNA helicase; replicative DNA helicase complement(2434210..2435736) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285737 YP_002480596.1 CDS rplI NC_011883.1 2435745 2436251 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2435745..2436251) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285738 YP_002480597.1 CDS rpsR NC_011883.1 2436262 2436525 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(2436262..2436525) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285739 YP_002480598.1 CDS rpsF NC_011883.1 2436527 2436835 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2436527..2436835) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285740 YP_002480599.1 CDS Ddes_2025 NC_011883.1 2437008 2437907 R hypothetical protein complement(2437008..2437907) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285741 YP_002480600.1 CDS tgt NC_011883.1 2438030 2439253 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2438030..2439253 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285742 YP_002480601.1 CDS Ddes_2027 NC_011883.1 2439700 2441358 D KEGG: cti:RALTA_B1275 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2439700..2441358 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285743 YP_002480602.1 CDS Ddes_2028 NC_011883.1 2441565 2441846 R KEGG: dvl:Dvul_1220 hypothetical protein; hypothetical protein complement(2441565..2441846) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285744 YP_002480603.1 CDS Ddes_2029 NC_011883.1 2441896 2442126 R hypothetical protein complement(2441896..2442126) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285745 YP_002480604.1 CDS Ddes_2030 NC_011883.1 2442277 2443809 R PFAM: Spermine synthase; KEGG: dvl:Dvul_2159 hypothetical protein; spermine synthase complement(2442277..2443809) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285746 YP_002480605.1 CDS Ddes_2031 NC_011883.1 2443943 2444530 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dvl:Dvul_1603 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase complement(2443943..2444530) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285747 YP_002480606.1 CDS Ddes_2032 NC_011883.1 2444539 2445207 R PFAM: conserved hypothetical protein; KEGG: dvl:Dvul_1602 hypothetical protein; hypothetical protein complement(2444539..2445207) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285748 YP_002480607.1 CDS Ddes_2033 NC_011883.1 2445640 2447250 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dvl:Dvul_1601 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 2445640..2447250 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285749 YP_002480608.1 CDS Ddes_2034 NC_011883.1 2447266 2447817 D TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: dvl:Dvul_1600 putative methyltransferase; methyltransferase 2447266..2447817 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285750 YP_002480609.1 CDS Ddes_2035 NC_011883.1 2447814 2448353 D KEGG: dvl:Dvul_1599 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 2447814..2448353 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285751 YP_002480610.1 CDS miaA NC_011883.1 2448366 2449337 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2448366..2449337 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285752 YP_002480611.1 CDS Ddes_2037 NC_011883.1 2449642 2450343 R PFAM: carbonic anhydrase; KEGG: tdn:Suden_0162 carbonate dehydratase; carbonate dehydratase complement(2449642..2450343) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285753 YP_002480612.1 CDS Ddes_2038 NC_011883.1 2450830 2451810 D PFAM: cytochrome c class III; KEGG: dvl:Dvul_2405 cytochrome c, class III; cytochrome c class III 2450830..2451810 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285754 YP_002480613.1 CDS Ddes_2039 NC_011883.1 2451824 2452927 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2406 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 2451824..2452927 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285755 YP_002480614.1 CDS Ddes_2040 NC_011883.1 2452928 2454142 D PFAM: Polysulphide reductase NrfD; KEGG: dvl:Dvul_2407 polysulphide reductase, NrfD; polysulfide reductase NrfD 2452928..2454142 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285756 YP_002480615.1 CDS Ddes_2041 NC_011883.1 2454165 2454317 D hypothetical protein 2454165..2454317 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285757 YP_002480616.1 CDS Ddes_2042 NC_011883.1 2454868 2455638 D hypothetical protein 2454868..2455638 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285758 YP_002480617.1 CDS Ddes_2043 NC_011883.1 2456114 2457346 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(2456114..2457346) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285759 YP_002480618.1 CDS Ddes_2044 NC_011883.1 2457736 2458740 R hypothetical protein complement(2457736..2458740) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285760 YP_002480619.1 CDS Ddes_2045 NC_011883.1 2458796 2459449 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dvl:Dvul_2645 hydrolase; haloacid dehalogenase domain-containing protein hydrolase complement(2458796..2459449) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285761 YP_002480620.1 CDS Ddes_2046 NC_011883.1 2459690 2460415 R PFAM: transferase hexapeptide repeat containing protein; KEGG: dvl:Dvul_2643 hexapaptide repeat-containing transferase; transferase hexapeptide repeat containing protein complement(2459690..2460415) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285762 YP_002480621.1 CDS Ddes_2047 NC_011883.1 2460418 2461188 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2460418..2461188) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285763 YP_002480622.1 CDS Ddes_2048 NC_011883.1 2461306 2462220 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dvl:Dvul_2641 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2461306..2462220) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285764 YP_002480623.1 CDS Ddes_2049 NC_011883.1 2462223 2463026 R PFAM: HpcH/HpaI aldolase; KEGG: dvl:Dvul_2640 2-dehydro-3-deoxyglucarate aldolase; HpcH/HpaI aldolase complement(2462223..2463026) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285765 YP_002480624.1 CDS Ddes_2050 NC_011883.1 2463350 2465338 D PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; KEGG: dvl:Dvul_0382 molybdenum cofactor synthesis domain-containing protein; MoeA domain-containing protein domain I and II 2463350..2465338 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285766 YP_002480625.1 CDS Ddes_2051 NC_011883.1 2465430 2466638 R PFAM: iron-containing alcohol dehydrogenase; KEGG: cbh:CLC_1475 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(2465430..2466638) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285767 YP_002480626.1 CDS Ddes_2052 NC_011883.1 2467322 2467750 R PFAM: TOBE domain protein; KEGG: pfl:PFL_3618 molybdenum-pterin-binding protein; TOBE domain-containing protein complement(2467322..2467750) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285768 YP_002480627.1 CDS Ddes_2053 NC_011883.1 2468278 2468670 R KEGG: dvu:DVU2496 putative lipoprotein; hypothetical protein complement(2468278..2468670) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285769 YP_002480628.1 CDS Ddes_2054 NC_011883.1 2468730 2469590 R PFAM: peptidase M48 Ste24p; KEGG: dvl:Dvul_0750 peptidase M48, Ste24p; peptidase M48 Ste24p complement(2468730..2469590) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285770 YP_002480629.1 CDS Ddes_2055 NC_011883.1 2469892 2471832 R KEGG: hau:Haur_3584 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase complement(2469892..2471832) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285771 YP_002480630.1 CDS Ddes_2056 NC_011883.1 2471820 2473241 R PFAM: glycosyl transferase group 1; KEGG: sfu:Sfum_2261 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2471820..2473241) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285772 YP_002480631.1 CDS Ddes_2057 NC_011883.1 2473475 2474500 R KEGG: sfu:Sfum_2250 hypothetical protein; hypothetical protein complement(2473475..2474500) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285773 YP_002480632.1 CDS Ddes_2058 NC_011883.1 2474497 2475855 R PFAM: glycosyl transferase group 1; KEGG: sfu:Sfum_2261 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2474497..2475855) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285774 YP_002480633.1 CDS Ddes_2059 NC_011883.1 2475913 2477235 R PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: neu:NE1388 aminotransferase class-I; glycine C-acetyltransferase complement(2475913..2477235) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285775 YP_002480634.1 CDS Ddes_2060 NC_011883.1 2477344 2477493 R hypothetical protein complement(2477344..2477493) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285776 YP_002480635.1 CDS Ddes_2061 NC_011883.1 2477566 2481828 D PFAM: Acyl transferase; KEGG: sco:SCO5892 polyketide synthase; acyl transferase 2477566..2481828 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285777 YP_002480636.1 CDS Ddes_2062 NC_011883.1 2481897 2483363 D KEGG: sfu:Sfum_2232 outer membrane efflux protein; Outer membrane protein-like protein 2481897..2483363 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285778 YP_002480637.1 CDS Ddes_2063 NC_011883.1 2483363 2484307 D KEGG: sfu:Sfum_2231 multidrug resistance efflux pump-like; hypothetical protein 2483363..2484307 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285779 YP_002480638.1 CDS Ddes_2064 NC_011883.1 2484317 2485723 D PFAM: polysaccharide biosynthesis protein; KEGG: sfu:Sfum_2260 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2484317..2485723 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285780 YP_002480639.1 CDS Ddes_2065 NC_011883.1 2485967 2486965 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvu:DVU3143 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 2485967..2486965 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285781 YP_002480640.1 CDS Ddes_2066 NC_011883.1 2486962 2487474 D KEGG: dol:Dole_0301 hypothetical protein; hypothetical protein 2486962..2487474 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285782 YP_002480641.1 CDS Ddes_2067 NC_011883.1 2487485 2488201 D KEGG: bpm:BURPS1710b_2554 hypothetical protein; hypothetical protein 2487485..2488201 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285783 YP_002480642.1 CDS argJ NC_011883.1 2488143 2489330 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(2488143..2489330) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285784 YP_002480643.1 CDS Ddes_2069 NC_011883.1 2489647 2491725 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2489647..2491725) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285785 YP_002480644.1 CDS Ddes_2070 NC_011883.1 2491834 2492304 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2491834..2492304) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285786 YP_002480645.1 CDS rpsL NC_011883.1 2492418 2492789 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2492418..2492789) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285787 YP_002480646.1 CDS Ddes_2072 NC_011883.1 2492977 2493321 R PFAM: small multidrug resistance protein; KEGG: sml:Smlt3363 putative transmebrane small multidrug resistance transport protein; small multidrug resistance protein complement(2492977..2493321) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285788 YP_002480647.1 CDS valS NC_011883.1 2493547 2496213 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(2493547..2496213) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285789 YP_002480648.1 CDS Ddes_2074 NC_011883.1 2496252 2497727 D KEGG: dvl:Dvul_2239 hypothetical protein; hypothetical protein 2496252..2497727 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285790 YP_002480649.1 CDS Ddes_2075 NC_011883.1 2497771 2498484 D TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: dvl:Dvul_2078 lipoate-protein ligase B; lipoate-protein ligase B 2497771..2498484 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285791 YP_002480650.1 CDS Ddes_2076 NC_011883.1 2498481 2499380 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2498481..2499380 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285792 YP_002480651.1 CDS Ddes_2077 NC_011883.1 2499675 2500658 R PFAM: Auxin Efflux Carrier; KEGG: dvl:Dvul_1673 auxin efflux carrier; auxin efflux carrier complement(2499675..2500658) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285793 YP_002480652.1 CDS Ddes_2078 NC_011883.1 2501087 2501692 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: dvl:Dvul_1594 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(2501087..2501692) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285794 YP_002480653.1 CDS Ddes_2079 NC_011883.1 2502079 2503158 R PFAM: Lytic transglycosylase catalytic; KEGG: dvl:Dvul_1595 lytic transglycosylase, catalytic; lytic transglycosylase complement(2502079..2503158) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285795 YP_002480654.1 CDS Ddes_2080 NC_011883.1 2503586 2504707 D KEGG: dvl:Dvul_0756 hypothetical protein; hypothetical protein 2503586..2504707 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285796 YP_002480655.1 CDS Ddes_2081 NC_011883.1 2504709 2506898 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dvu:DVU0053 sulfate permease, putative; sulfate transporter 2504709..2506898 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285797 YP_002480656.1 CDS Ddes_2082 NC_011883.1 2507077 2508072 D PFAM: dihydrouridine synthase DuS; KEGG: dvu:DVU0054 dihydrouridine synthase family protein; dihydrouridine synthase DuS 2507077..2508072 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285798 YP_002480657.1 CDS Ddes_2083 NC_011883.1 2508158 2509018 D KEGG: dvl:Dvul_2906 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 2508158..2509018 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285799 YP_002480658.1 CDS Ddes_2084 NC_011883.1 2509055 2510065 D PFAM: response regulator receiver; CheW domain protein; KEGG: dvl:Dvul_2905 putative CheW protein; response regulator receiver modulated CheW protein 2509055..2510065 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285800 YP_002480659.1 CDS Ddes_2085 NC_011883.1 2510465 2511424 D TIGRFAM: TonB family protein; KEGG: dvl:Dvul_2863 TonB family protein; TonB family protein 2510465..2511424 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285801 YP_002480660.1 CDS Ddes_2086 NC_011883.1 2511707 2513680 D TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: dvl:Dvul_2441 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 2511707..2513680 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285802 YP_002480661.1 CDS Ddes_2087 NC_011883.1 2514043 2515752 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dvl:Dvul_0176 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2514043..2515752 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285803 YP_002480662.1 CDS Ddes_2088 NC_011883.1 2515972 2516409 R hypothetical protein complement(2515972..2516409) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285804 YP_002480663.1 CDS Ddes_2089 NC_011883.1 2516499 2517695 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2516499..2517695 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285805 YP_002480664.1 CDS Ddes_2090 NC_011883.1 2517898 2518311 D PFAM: Rhodanese domain protein; KEGG: det:DET1392 rhodanese-like domain-containing protein; rhodanese domain-containing protein 2517898..2518311 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285806 YP_002480665.1 CDS Ddes_2091 NC_011883.1 2518398 2519897 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: lip:LI0348 flagellar hook protein FlgE; hypothetical protein 2518398..2519897 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285807 YP_002480666.1 CDS Ddes_2092 NC_011883.1 2520029 2520700 R PFAM: cyclic nucleotide-binding; KEGG: dvl:Dvul_2554 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(2520029..2520700) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285808 YP_002480667.1 CDS Ddes_2093 NC_011883.1 2520909 2522360 D KEGG: drm:Dred_0607 hypothetical protein; hypothetical protein 2520909..2522360 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285809 YP_002480668.1 CDS Ddes_2094 NC_011883.1 2522432 2523832 D PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: drm:Dred_0362 sodium/sulphate symporter; sodium/sulfate symporter 2522432..2523832 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285810 YP_002480669.1 CDS Ddes_2095 NC_011883.1 2523879 2525468 D KEGG: dvu:DVU0799 hypothetical protein; hypothetical protein 2523879..2525468 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285811 YP_002480670.1 CDS Ddes_2096 NC_011883.1 2525904 2526830 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: ppd:Ppro_2359 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 2525904..2526830 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285812 YP_002480671.1 CDS Ddes_2097 NC_011883.1 2527114 2527575 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2527114..2527575 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285813 YP_002480672.1 CDS Ddes_2098 NC_011883.1 2527685 2528266 D KEGG: dvl:Dvul_0826 heterodisulfide reductase, C subunit; heterodisulfide reductase subunit C 2527685..2528266 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285814 YP_002480673.1 CDS Ddes_2099 NC_011883.1 2528263 2529183 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvl:Dvul_0827 CoB--CoM heterodisulfide reductase; CoB--CoM heterodisulfide reductase 2528263..2529183 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285815 YP_002480674.1 CDS Ddes_2100 NC_011883.1 2529180 2531141 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0828 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 2529180..2531141 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285816 YP_002480675.1 CDS Ddes_2101 NC_011883.1 2531129 2532577 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dvl:Dvul_0829 methyl-viologen-reducing hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase delta subunit 2531129..2532577 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285817 YP_002480676.1 CDS Ddes_2102 NC_011883.1 2532574 2533647 D KEGG: dvu:DVU2400 hydrogenase, putative; hydrogenase 2532574..2533647 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285818 YP_002480677.1 CDS Ddes_2103 NC_011883.1 2533809 2534669 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dvl:Dvul_0831 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2533809..2534669 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285819 YP_002480678.1 CDS Ddes_2104 NC_011883.1 2535561 2536145 D KEGG: glo:Glov_0546 membrane protein-like protein; hypothetical protein 2535561..2536145 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285820 YP_002480679.1 CDS Ddes_2105 NC_011883.1 2536149 2537537 D PFAM: protein of unknown function DUF214; KEGG: dvu:DVU3323 ABC transporter, permease protein; hypothetical protein 2536149..2537537 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285821 YP_002480680.1 CDS Ddes_2106 NC_011883.1 2537558 2538304 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU3324 ABC transporter, ATP-binding protein; ABC transporter-like protein 2537558..2538304 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285822 YP_002480681.1 CDS Ddes_2107 NC_011883.1 2538301 2538840 D hypothetical protein 2538301..2538840 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285823 YP_002480682.1 CDS Ddes_2108 NC_011883.1 2539005 2539535 R KEGG: sat:SYN_00794 phosphatidylserine/phosphatidylglycerophosphate related protein; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein complement(2539005..2539535) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285824 YP_002480683.1 CDS Ddes_2109 NC_011883.1 2539808 2541286 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3089 ABC transporter related; ABC transporter-like protein complement(2539808..2541286) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285825 YP_002480684.1 CDS Ddes_2110 NC_011883.1 2541816 2543498 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(2541816..2543498) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285826 YP_002480685.1 CDS Ddes_2111 NC_011883.1 2543713 2545263 D PFAM: polysaccharide biosynthesis protein; KEGG: dvl:Dvul_2638 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2543713..2545263 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285827 YP_002480686.1 CDS Ddes_2112 NC_011883.1 2545662 2547989 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dvl:Dvul_0960 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2545662..2547989) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285828 YP_002480687.1 CDS Ddes_2113 NC_011883.1 2548377 2548664 D hypothetical protein 2548377..2548664 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285829 YP_002480688.1 CDS Ddes_2114 NC_011883.1 2549493 2550710 D PFAM: Extracellular ligand-binding receptor; KEGG: dvl:Dvul_0562 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2549493..2550710 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285830 YP_002480689.1 CDS Ddes_2115 NC_011883.1 2550892 2551806 D PFAM: inner-membrane translocator; KEGG: dvl:Dvul_0563 inner-membrane translocator; inner-membrane translocator 2550892..2551806 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285831 YP_002480690.1 CDS Ddes_2116 NC_011883.1 2551819 2552982 D PFAM: inner-membrane translocator; KEGG: dvu:DVU2742 high-affinity branched chain amino acid ABC transporter, permease protein; inner-membrane translocator 2551819..2552982 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285832 YP_002480691.1 CDS Ddes_2117 NC_011883.1 2553062 2553817 D PFAM: ABC transporter related; KEGG: dvl:Dvul_0565 ABC transporter related; ABC transporter-like protein 2553062..2553817 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285833 YP_002480692.1 CDS Ddes_2118 NC_011883.1 2553826 2554548 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_0566 ABC transporter related; ABC transporter-like protein 2553826..2554548 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285834 YP_002480693.1 CDS Ddes_2119 NC_011883.1 2554920 2555324 D KEGG: dvu:DVU1980 hypothetical protein; hypothetical protein 2554920..2555324 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285835 YP_002480694.1 CDS Ddes_2120 NC_011883.1 2555514 2555933 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: dvl:Dvul_0821 calcium-binding EF-hand-containing protein; putative signal transduction protein with EFhand domain 2555514..2555933 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285836 YP_002480695.1 CDS Ddes_2121 NC_011883.1 2555923 2558163 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU2413 radical SAM domain-containing protein; radical SAM protein 2555923..2558163 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285837 YP_002480696.1 CDS Ddes_2122 NC_011883.1 2558181 2558408 D KEGG: dvl:Dvul_0814 SlyX family protein; SlyX family protein 2558181..2558408 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285838 YP_002480697.1 CDS Ddes_2123 NC_011883.1 2558430 2558876 D PFAM: GCN5-related N-acetyltransferase; KEGG: ppg:PputGB1_3592 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2558430..2558876 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285839 YP_002480698.1 CDS Ddes_2124 NC_011883.1 2559486 2560211 R KEGG: dvl:Dvul_2132 hypothetical protein; hypothetical protein complement(2559486..2560211) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285840 YP_002480699.1 CDS Ddes_2125 NC_011883.1 2560320 2561501 R KEGG: dvl:Dvul_2133 heterodisulfide reductase, transmembrane subunit, putative; heterodisulfide reductase, transmembrane subunit complement(2560320..2561501) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285841 YP_002480700.1 CDS Ddes_2126 NC_011883.1 2561515 2563785 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dvu:DVU0849 heterodisulfide reductase, iron-sulfur-binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit complement(2561515..2563785) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285842 YP_002480701.1 CDS Ddes_2127 NC_011883.1 2563791 2565026 R KEGG: dvu:DVU0848 heterodisulfide reductase, putative; heterodisulfide reductase complement(2563791..2565026) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285843 YP_002480702.1 CDS Ddes_2128 NC_011883.1 2565276 2565410 D hypothetical protein 2565276..2565410 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285844 YP_002480703.1 CDS Ddes_2129 NC_011883.1 2565407 2567395 R catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha complement(2565407..2567395) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285845 YP_002480704.1 CDS Ddes_2130 NC_011883.1 2567433 2567921 R TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2137 adenylylsulfate reductase, beta subunit; adenylylsulfate reductase subunit beta complement(2567433..2567921) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285846 YP_002480705.1 CDS Ddes_2131 NC_011883.1 2568376 2570184 D PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: dvl:Dvul_2138 5-enolpyruvylshikimate-3-phosphate synthase-like protein; 3-phosphoshikimate 1-carboxyvinyltransferase 2568376..2570184 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285847 YP_002480706.1 CDS Ddes_2132 NC_011883.1 2570553 2571029 D hypothetical protein 2570553..2571029 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285848 YP_002480707.1 CDS Ddes_2133 NC_011883.1 2571079 2571309 R hypothetical protein complement(2571079..2571309) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285849 YP_002480708.1 CDS Ddes_2134 NC_011883.1 2571391 2571609 D hypothetical protein 2571391..2571609 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285850 YP_002480709.1 CDS Ddes_2135 NC_011883.1 2572035 2572610 R KEGG: lip:LI1185 hypothetical protein; hypothetical protein complement(2572035..2572610) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285851 YP_002480710.1 CDS Ddes_2136 NC_011883.1 2573037 2574251 R KEGG: dvl:Dvul_1858 GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2573037..2574251) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285852 YP_002480711.1 CDS Ddes_2137 NC_011883.1 2574519 2575304 R KEGG: dvl:Dvul_2461 hypothetical protein; hypothetical protein complement(2574519..2575304) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285853 YP_002480712.1 CDS Ddes_2138 NC_011883.1 2575451 2578594 R PFAM: acriflavin resistance protein; KEGG: dvu:DVU0438 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(2575451..2578594) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285854 YP_002480713.1 CDS Ddes_2139 NC_011883.1 2578608 2579345 R PFAM: protein of unknown function DUF81; KEGG: mpt:Mpe_A0917 hypothetical protein; hypothetical protein complement(2578608..2579345) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285855 YP_002480714.1 CDS Ddes_2140 NC_011883.1 2579508 2580662 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: dvu:DVU2237 cobalamin biosynthesis protein CobD, putative; cobalamin biosynthesis protein CbiB complement(2579508..2580662) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285856 YP_002480715.1 CDS Ddes_2141 NC_011883.1 2580659 2581141 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvl:Dvul_1004 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(2580659..2581141) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285857 YP_002480716.1 CDS Ddes_2142 NC_011883.1 2581571 2583652 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dvl:Dvul_1002 hydantoinase/oxoprolinase; hydantoinase/oxoprolinase complement(2581571..2583652) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285858 YP_002480717.1 CDS Ddes_2143 NC_011883.1 2583877 2584797 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2583877..2584797 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285859 YP_002480718.1 CDS Ddes_2144 NC_011883.1 2584842 2587067 D KEGG: dvl:Dvul_0189 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma/tau 2584842..2587067 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285860 YP_002480719.1 CDS Ddes_2145 NC_011883.1 2587248 2587469 D hypothetical protein 2587248..2587469 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285861 YP_002480720.1 CDS Ddes_2146 NC_011883.1 2587588 2587899 D PFAM: conserved hypothetical protein; KEGG: dvu:DVU3199 hypothetical protein; hypothetical protein 2587588..2587899 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285862 YP_002480721.1 CDS Ddes_2147 NC_011883.1 2587904 2588512 D TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dvl:Dvul_0187 recombination protein RecR; recombination protein RecR 2587904..2588512 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285863 YP_002480722.1 CDS Ddes_2148 NC_011883.1 2588934 2589764 D PFAM: zinc/iron permease; KEGG: dvl:Dvul_2882 zinc/iron permease; zinc/iron permease 2588934..2589764 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285864 YP_002480723.1 CDS Ddes_2149 NC_011883.1 2590341 2591924 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dvl:Dvul_1295 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2590341..2591924 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285865 YP_002480724.1 CDS Ddes_2150 NC_011883.1 2592242 2593081 R KEGG: dol:Dole_3017 split soret cytochrome c precursor; split soret cytochrome c complement(2592242..2593081) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285866 YP_002480725.1 CDS dnaK NC_011883.1 2593387 2595303 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2593387..2595303 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285867 YP_002480726.1 CDS Ddes_2152 NC_011883.1 2595567 2596922 D KEGG: dvl:Dvul_2167 hypothetical protein; hypothetical protein 2595567..2596922 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285868 YP_002480727.1 CDS Ddes_2153 NC_011883.1 2597152 2597448 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dvl:Dvul_2168 glutamyl-tRNA(Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 2597152..2597448 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285869 YP_002480728.1 CDS gatA NC_011883.1 2597673 2599133 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 2597673..2599133 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285870 YP_002480729.1 CDS Ddes_2155 NC_011883.1 2599518 2600798 R PFAM: protein of unknown function DUF1063; KEGG: bfr:BF3772 putative inner membrane protein; hypothetical protein complement(2599518..2600798) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285871 YP_002480730.1 CDS Ddes_2156 NC_011883.1 2600795 2602000 R PFAM: sodium:dicarboxylate symporter; KEGG: ctc:CTC02307 serine/threonine sodium symporter; sodium:dicarboxylate symporter complement(2600795..2602000) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285872 YP_002480731.1 CDS Ddes_2157 NC_011883.1 2602065 2602358 D hypothetical protein 2602065..2602358 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285873 YP_002480732.1 CDS Ddes_2158 NC_011883.1 2602378 2602692 R PFAM: small multidrug resistance protein; KEGG: dac:Daci_0685 small multidrug resistance protein; small multidrug resistance protein complement(2602378..2602692) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285874 YP_002480733.1 CDS Ddes_2159 NC_011883.1 2602917 2603816 R PFAM: Peptidase M23; KEGG: dvl:Dvul_0148 peptidase M23B; peptidase M23 complement(2602917..2603816) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285875 YP_002480734.1 CDS Ddes_2160 NC_011883.1 2603874 2604668 R PFAM: PP-loop domain protein; KEGG: dvl:Dvul_0147 PP-loop domain-containing protein; PP-loop domain-containing protein complement(2603874..2604668) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285876 YP_002480735.1 CDS Ddes_2161 NC_011883.1 2604900 2605136 D TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: dvl:Dvul_0146 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 2604900..2605136 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285877 YP_002480736.1 CDS Ddes_2162 NC_011883.1 2605386 2606489 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2605386..2606489 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285878 YP_002480737.1 CDS Ddes_2163 NC_011883.1 2607477 2609318 R PFAM: carbon starvation protein CstA; KEGG: gur:Gura_2790 carbon starvation protein CstA; carbon starvation protein CstA complement(2607477..2609318) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285879 YP_002480738.1 CDS Ddes_2164 NC_011883.1 2609358 2609516 R hypothetical protein complement(2609358..2609516) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285880 YP_002480739.1 CDS Ddes_2165 NC_011883.1 2610136 2610336 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rru:Rru_A2432 bifunctional sulfur carrier protein/thiazole synthase protein; thiamine biosynthesis protein ThiS 2610136..2610336 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285881 YP_002480740.1 CDS thiG NC_011883.1 2610645 2611448 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2610645..2611448 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285882 YP_002480741.1 CDS Ddes_2167 NC_011883.1 2611459 2612583 D TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: dvu:DVU2093 thiamine biosynthesis protein ThiH; thiazole biosynthesis protein ThiH 2611459..2612583 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285883 YP_002480742.1 CDS Ddes_2168 NC_011883.1 2612585 2613229 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dvl:Dvul_1138 thiamine biosynthesis protein ThiF; UBA/THIF-type NAD/FAD binding protein 2612585..2613229 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285884 YP_002480743.1 CDS Ddes_2169 NC_011883.1 2613690 2615378 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dvl:Dvul_0347 L-lactate transport; L-lactate transport protein complement(2613690..2615378) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285885 YP_002480744.1 CDS Ddes_2170 NC_011883.1 2615858 2617495 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dvl:Dvul_0106 L-lactate transport; L-lactate transport protein complement(2615858..2617495) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285886 YP_002480745.1 CDS Ddes_2171 NC_011883.1 2617677 2618651 R PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_2885 glycosyl transferase family protein; family 2 glycosyl transferase complement(2617677..2618651) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285887 YP_002480746.1 CDS Ddes_2172 NC_011883.1 2618648 2619169 R PFAM: GtrA family protein; KEGG: pzu:PHZ_c0184 GtrA-like protein; GtrA family protein complement(2618648..2619169) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285888 YP_002480747.1 CDS Ddes_2173 NC_011883.1 2619166 2620122 R PFAM: glycosyl transferase family 2; KEGG: gka:GK3091 glycosyltransferase; family 2 glycosyl transferase complement(2619166..2620122) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285889 YP_002480748.1 CDS Ddes_2174 NC_011883.1 2620160 2621299 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvl:Dvul_2886 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(2620160..2621299) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285890 YP_002480749.1 CDS Ddes_2175 NC_011883.1 2621888 2622388 R PFAM: CheW domain protein; KEGG: dvl:Dvul_1259 putative CheW protein; CheW protein complement(2621888..2622388) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285891 YP_002480750.1 CDS Ddes_2176 NC_011883.1 2622536 2625559 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: syn:slr2104 two-component hybrid histidine kinase; Hpt sensor hybrid histidine kinase complement(2622536..2625559) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285892 YP_002480751.1 CDS Ddes_2177 NC_011883.1 2625855 2627540 R TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dvl:Dvul_2161 cobyric acid synthase CobQ; cobyric acid synthase CobQ complement(2625855..2627540) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285893 YP_002480752.1 CDS Ddes_2178 NC_011883.1 2627782 2629869 D PFAM: AsmA family protein; KEGG: lip:LI0358 AsmA protein; AsmA family protein 2627782..2629869 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285894 YP_002480753.1 CDS Ddes_2179 NC_011883.1 2630418 2631266 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2630418..2631266 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285895 YP_002480754.1 CDS Ddes_2180 NC_011883.1 2631703 2632410 D PFAM: OmpA/MotB domain protein; KEGG: dvl:Dvul_0641 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 2631703..2632410 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285896 YP_002480755.1 CDS Ddes_2181 NC_011883.1 2632779 2633387 D PFAM: shikimate kinase; KEGG: ppd:Ppro_2361 shikimate kinase II; shikimate kinase 2632779..2633387 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285897 YP_002480756.1 CDS Ddes_2182 NC_011883.1 2633380 2634450 D PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_2831 glycosyl transferase family protein; family 2 glycosyl transferase 2633380..2634450 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285898 YP_002480757.1 CDS Ddes_2183 NC_011883.1 2634794 2635213 D PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvl:Dvul_2190 H+-transporting two-sector ATPase, B/B' subunit; H+transporting two-sector ATPase subunit B/B' 2634794..2635213 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285899 YP_002480758.1 CDS Ddes_2184 NC_011883.1 2635314 2635895 D PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvl:Dvul_2191 H+-transporting two-sector ATPase, B/B' subunit; H+transporting two-sector ATPase subunit B/B' 2635314..2635895 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285900 YP_002480759.1 CDS Ddes_2185 NC_011883.1 2635892 2636443 D produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 2635892..2636443 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285901 YP_002480760.1 CDS Ddes_2186 NC_011883.1 2636447 2637955 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2636447..2637955 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285902 YP_002480761.1 CDS Ddes_2187 NC_011883.1 2637982 2638866 D produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 2637982..2638866 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285903 YP_002480762.1 CDS Ddes_2188 NC_011883.1 2638878 2640299 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 2638878..2640299 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285904 YP_002480763.1 CDS Ddes_2189 NC_011883.1 2640384 2640788 D TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: dvl:Dvul_2196 F0F1 ATP synthase subunit epsilon; ATP synthase F1 subunit epsilon 2640384..2640788 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285905 YP_002480764.1 CDS Ddes_2190 NC_011883.1 2641024 2641338 R PFAM: small multidrug resistance protein; KEGG: efa:EF0360 SugE protein; small multidrug resistance protein complement(2641024..2641338) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285906 YP_002480765.1 CDS Ddes_2191 NC_011883.1 2641340 2641651 R PFAM: small multidrug resistance protein; KEGG: esi:Exig_0410 small multidrug resistance protein; small multidrug resistance protein complement(2641340..2641651) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285907 YP_002480766.1 CDS Ddes_2192 NC_011883.1 2641653 2642228 R PFAM: regulatory protein TetR; KEGG: mrd:Mrad2831_0286 TetR family transcriptional regulator; TetR family transcriptional regulator complement(2641653..2642228) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285908 YP_002480767.1 CDS Ddes_2193 NC_011883.1 2642472 2644277 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2642472..2644277 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285909 YP_002480768.1 CDS Ddes_2194 NC_011883.1 2644548 2644799 R hypothetical protein complement(2644548..2644799) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285910 YP_002480769.1 CDS Ddes_2195 NC_011883.1 2645062 2646087 R KEGG: dvl:Dvul_0119 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II complement(2645062..2646087) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285911 YP_002480770.1 CDS Ddes_2196 NC_011883.1 2646090 2647406 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dvl:Dvul_0118 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(2646090..2647406) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285912 YP_002480771.1 CDS Ddes_2197 NC_011883.1 2647648 2649630 D molecular chaperone; heat shock protein 90 2647648..2649630 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285913 YP_002480772.1 CDS Ddes_2198 NC_011883.1 2649929 2651002 R PFAM: creatinase; peptidase M24; KEGG: dvl:Dvul_2684 peptidase M24; peptidase M24 complement(2649929..2651002) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285914 YP_002480773.1 CDS Ddes_2199 NC_011883.1 2651228 2652037 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dvl:Dvul_0073 oxidoreductase FAD-binding subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2651228..2652037 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285915 YP_002480774.1 CDS Ddes_2200 NC_011883.1 2652719 2653645 D TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: dvl:Dvul_0072 dihydroorotate dehydrogenase family protein; dihydroorotate dehydrogenase family protein 2652719..2653645 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285916 YP_002480775.1 CDS Ddes_2201 NC_011883.1 2653649 2654779 D KEGG: mxa:MXAN_3747 hypothetical protein; hypothetical protein 2653649..2654779 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285917 YP_002480776.1 CDS Ddes_2202 NC_011883.1 2654776 2656011 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mxa:MXAN_3746 oxidoreductase, short chain dehydrogenase/reductase family; NAD-dependent epimerase/dehydratase 2654776..2656011 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285918 YP_002480777.1 CDS Ddes_2203 NC_011883.1 2656008 2658017 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU3052 ABC transporter, ATP-binding protein; ABC transporter-like protein 2656008..2658017 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285919 YP_002480778.1 CDS Ddes_2204 NC_011883.1 2658225 2658650 D PFAM: NUDIX hydrolase; KEGG: dvl:Dvul_0325 NUDIX hydrolase; NUDIX hydrolase 2658225..2658650 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285920 YP_002480779.1 CDS Ddes_2205 NC_011883.1 2658863 2660317 R KEGG: dvl:Dvul_0319 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(2658863..2660317) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285921 YP_002480780.1 CDS Ddes_2206 NC_011883.1 2660606 2662111 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: dvl:Dvul_2519 leucyl aminopeptidase; leucyl aminopeptidase 2660606..2662111 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285922 YP_002480781.1 CDS Ddes_2207 NC_011883.1 2662111 2663634 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvl:Dvul_2236 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2662111..2663634 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285923 YP_002480782.1 CDS Ddes_2208 NC_011883.1 2663815 2664489 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: dvl:Dvul_2234 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 2663815..2664489 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285924 YP_002480783.1 CDS Ddes_2209 NC_011883.1 2664775 2665461 R PFAM: acylneuraminate cytidylyltransferase; KEGG: dvl:Dvul_2634 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase complement(2664775..2665461) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285925 YP_002480784.1 CDS Ddes_2210 NC_011883.1 2665458 2665700 R hypothetical protein complement(2665458..2665700) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285926 YP_002480785.1 CDS Ddes_2211 NC_011883.1 2665762 2667393 R KEGG: dvl:Dvul_2633 cytidine 5'monophosphate N-acetylneuraminic acid synthetase; cytidine 5'monophosphate N-acetylneuraminic acid synthetase complement(2665762..2667393) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285927 YP_002480786.1 CDS Ddes_2212 NC_011883.1 2667594 2668781 R PFAM: aminotransferase class V; DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvl:Dvul_2632 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(2667594..2668781) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285928 YP_002480787.1 CDS Ddes_2213 NC_011883.1 2669108 2670187 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dvl:Dvul_2631 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(2669108..2670187) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285929 YP_002480788.1 CDS Ddes_2214 NC_011883.1 2670302 2670949 R PFAM: protein of unknown function DUF805; KEGG: stp:Strop_0111 hypothetical protein; hypothetical protein complement(2670302..2670949) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285930 YP_002480789.1 CDS Ddes_2215 NC_011883.1 2671035 2671892 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2671035..2671892) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285931 YP_002480790.1 CDS eno NC_011883.1 2672239 2673537 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2672239..2673537) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285932 YP_002480791.1 CDS Ddes_2217 NC_011883.1 2673814 2674605 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(2673814..2674605) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285933 YP_002480792.1 CDS Ddes_2218 NC_011883.1 2674829 2676610 R KEGG: ppf:Pput_3103 hypothetical protein; hypothetical protein complement(2674829..2676610) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285934 YP_002480793.1 CDS Ddes_2219 NC_011883.1 2676637 2677620 R PFAM: glycosyl transferase family 2; KEGG: pfo:Pfl01_1379 glycosyl transferase family protein; family 2 glycosyl transferase complement(2676637..2677620) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285935 YP_002480794.1 CDS Ddes_2220 NC_011883.1 2677910 2678929 R PFAM: MscS Mechanosensitive ion channel; KEGG: pmr:PMI2164 mechanosensitive ion channel protein; mechanosensitive ion channel MscS complement(2677910..2678929) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285936 YP_002480795.1 CDS Ddes_2221 NC_011883.1 2679532 2679831 R hypothetical protein complement(2679532..2679831) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285937 YP_002480796.1 CDS Ddes_2222 NC_011883.1 2679840 2680154 R KEGG: rpr:RP723 hypothetical protein; hypothetical protein complement(2679840..2680154) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285938 YP_002480797.1 CDS Ddes_2223 NC_011883.1 2680380 2680685 D KEGG: dsy:DSY0287 hypothetical protein; hypothetical protein 2680380..2680685 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285939 YP_002480798.1 CDS Ddes_2224 NC_011883.1 2680874 2682688 R PFAM: K potassium transporter; KEGG: mac:MA3179 potassium uptake protein Kup; K potassium transporter complement(2680874..2682688) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285940 YP_002480799.1 CDS Ddes_2225 NC_011883.1 2683026 2683379 R PFAM: protein of unknown function DUF488; KEGG: mem:Memar_1211 hypothetical protein; hypothetical protein complement(2683026..2683379) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285941 YP_002480800.1 CDS Ddes_2226 NC_011883.1 2683585 2684775 R PFAM: major facilitator superfamily MFS_1; KEGG: bba:Bd1364 sugar efflux transporter; sugar efflux transporter complement(2683585..2684775) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285942 YP_002480801.1 CDS Ddes_2227 NC_011883.1 2685449 2687269 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2685449..2687269 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285943 YP_002480802.1 CDS Ddes_2228 NC_011883.1 2687724 2687990 D PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU2011 ISD1, transposase OrfA; transposase IS3/IS911 family protein 2687724..2687990 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285944 YP_002480803.1 CDS Ddes_2229 NC_011883.1 2688047 2688835 D PFAM: Integrase catalytic region; KEGG: dvl:Dvul_2602 integrase catalytic subunit; integrase catalytic subunit 2688047..2688835 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285945 YP_002480804.1 CDS Ddes_2230 NC_011883.1 2689326 2690030 R KEGG: dps:DP0413 hypothetical protein; hypothetical protein complement(2689326..2690030) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285946 YP_002480805.1 CDS Ddes_2231 NC_011883.1 2690030 2692138 R KEGG: dps:DP0414 hypothetical protein; hypothetical protein complement(2690030..2692138) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285947 YP_002480806.1 CDS Ddes_2232 NC_011883.1 2692461 2693054 R PFAM: integrase family protein; KEGG: nth:Nther_2955 integrase family protein; integrase family protein complement(2692461..2693054) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285948 YP_002480807.1 CDS Ddes_2233 NC_011883.1 2694115 2694438 R PFAM: helix-turn-helix domain protein; KEGG: cac:CAC1578 transcriptional regulator; XRE family transcriptional regulator complement(2694115..2694438) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285949 YP_002480808.1 CDS Ddes_2234 NC_011883.1 2694636 2694965 D hypothetical protein 2694636..2694965 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285950 YP_002480809.1 CDS Ddes_2235 NC_011883.1 2695025 2696605 D KEGG: met:M446_6918 hypothetical protein; hypothetical protein 2695025..2696605 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285951 YP_002480810.1 CDS Ddes_2236 NC_011883.1 2696622 2697644 R PFAM: integrase family protein; KEGG: dvl:Dvul_1487 phage integrase family protein; integrase family protein complement(2696622..2697644) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285952 YP_002480811.1 CDS Ddes_2237 NC_011883.1 2697644 2697856 R KEGG: dvl:Dvul_2781 hypothetical protein; hypothetical protein complement(2697644..2697856) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285953 YP_002480812.1 CDS Ddes_2238 NC_011883.1 2698202 2698798 D hypothetical protein 2698202..2698798 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285954 YP_002480813.1 CDS Ddes_2240 NC_011883.1 2700356 2700949 D PFAM: integrase family protein; KEGG: nth:Nther_2955 integrase family protein; integrase family protein 2700356..2700949 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285956 YP_002480814.1 CDS Ddes_2241 NC_011883.1 2701165 2701488 R hypothetical protein complement(2701165..2701488) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285957 YP_002480815.1 CDS Ddes_2242 NC_011883.1 2702041 2702646 D KEGG: hch:HCH_10009 BamHI-like type II restriction endonuclease; BamHI-like type II restriction endonuclease 2702041..2702646 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285958 YP_002480816.1 CDS Ddes_2243 NC_011883.1 2702638 2703495 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dol:Dole_0939 DNA methylase N-4/N-6 domain-containing protein; DNA methylase N-4/N-6 domain-containing protein complement(2702638..2703495) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285959 YP_002480817.1 CDS Ddes_2244 NC_011883.1 2704117 2704440 D hypothetical protein 2704117..2704440 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285960 YP_002480818.1 CDS Ddes_2245 NC_011883.1 2704779 2705972 R PFAM: aminotransferase class I and II; KEGG: dvu:DVU3223 aspartate aminotransferase; class I and II aminotransferase complement(2704779..2705972) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285962 YP_002480819.1 CDS Ddes_2246 NC_011883.1 2706253 2707059 D PFAM: sugar fermentation stimulation protein; KEGG: dvl:Dvul_0164 sugar fermentation stimulation protein; sugar fermentation stimulation protein 2706253..2707059 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285963 YP_002480820.1 CDS Ddes_2247 NC_011883.1 2707554 2708864 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(2707554..2708864) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285964 YP_002480821.1 CDS obgE NC_011883.1 2708882 2709982 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(2708882..2709982) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285965 YP_002480822.1 CDS rpmA NC_011883.1 2710120 2710389 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(2710120..2710389) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285966 YP_002480823.1 CDS rplU NC_011883.1 2710535 2710843 R PFAM: ribosomal protein L21; KEGG: dvl:Dvul_2058 50S ribosomal protein L21; 50S ribosomal protein L21 complement(2710535..2710843) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285967 YP_002480824.1 CDS Ddes_2251 NC_011883.1 2711111 2712763 D PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; Protein of unknown function methylase putative; KEGG: dvl:Dvul_2060 RNA methyltransferase; (uracil-5)-methyltransferase 2711111..2712763 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285968 YP_002480825.1 CDS Ddes_2252 NC_011883.1 2712923 2713279 D KEGG: dvl:Dvul_2064 ATP synthase protein I; hypothetical protein 2712923..2713279 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285969 YP_002480826.1 CDS Ddes_2253 NC_011883.1 2713239 2713682 D KEGG: dvl:Dvul_2065 hypothetical protein; hypothetical protein 2713239..2713682 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285970 YP_002480827.1 CDS Ddes_2254 NC_011883.1 2713972 2714676 D TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: dvl:Dvul_2066 ATP synthase F0, A subunit; ATP synthase F0 subunit A 2713972..2714676 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285971 YP_002480828.1 CDS Ddes_2255 NC_011883.1 2714812 2715135 D TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dvl:Dvul_2067 ATP synthase F0, C subunit; ATP synthase F0 subunit C 2714812..2715135 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285972 YP_002480829.1 CDS Ddes_2256 NC_011883.1 2715817 2716029 D hypothetical protein 2715817..2716029 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285973 YP_002480830.1 CDS Ddes_2257 NC_011883.1 2716454 2717095 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 2716454..2717095 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285974 YP_002480831.1 CDS Ddes_2258 NC_011883.1 2717106 2717903 D PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dvl:Dvul_2070 cobalamin-5-phosphate synthase CobS; cobalamin-5-phosphate synthase CobS 2717106..2717903 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285975 YP_002480832.1 CDS Ddes_2259 NC_011883.1 2718082 2718660 D PFAM: nitroreductase; KEGG: dvu:DVU1617 nitroreductase family protein; nitroreductase 2718082..2718660 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285976 YP_002480833.1 CDS Ddes_2260 NC_011883.1 2718752 2719108 R hypothetical protein complement(2718752..2719108) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285977 YP_002480834.1 CDS Ddes_2261 NC_011883.1 2719436 2720728 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cbk:CLL_A2804 putative signaling protein; diguanylate cyclase complement(2719436..2720728) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285978 YP_002480835.1 CDS Ddes_2262 NC_011883.1 2721228 2722463 R PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_0907 glycosyl transferase family protein; family 2 glycosyl transferase complement(2721228..2722463) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285979 YP_002480836.1 CDS Ddes_2263 NC_011883.1 2722456 2724243 R TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dvu:DVU0405 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(2722456..2724243) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285980 YP_002480837.1 CDS Ddes_2264 NC_011883.1 2724566 2725843 R PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dvu:DVU3206 phosphoribosylaminoimidazolecarboxamide formyltransferase, putative; phosphoribosylaminoimidazolecarboxamide formyltransferase complement(2724566..2725843) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285981 YP_002480838.1 CDS Ddes_2265 NC_011883.1 2726073 2726423 D KEGG: dvl:Dvul_0181 hypothetical protein; hypothetical protein 2726073..2726423 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285982 YP_002480839.1 CDS Ddes_2266 NC_011883.1 2726720 2727997 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2726720..2727997 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285983 YP_002480840.1 CDS Ddes_2267 NC_011883.1 2728012 2728953 D KEGG: dvu:DVU3203 DNA polymerase III, delta prime subunit, putative; DNA polymerase III subunit delta' 2728012..2728953 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285984 YP_002480841.1 CDS Ddes_2268 NC_011883.1 2729053 2731986 D KEGG: cbk:CLL_A2232 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 2729053..2731986 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285985 YP_002480842.1 CDS Ddes_2269 NC_011883.1 2732199 2732675 R KEGG: dvu:DVU0741 hypothetical protein; hypothetical protein complement(2732199..2732675) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285986 YP_002480843.1 CDS Ddes_2270 NC_011883.1 2732909 2733700 D PFAM: Methyltransferase type 12; KEGG: kra:Krad_2590 methyltransferase type 11; type 12 methyltransferase 2732909..2733700 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285987 YP_002480844.1 CDS Ddes_2271 NC_011883.1 2733888 2735327 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cti:RALTA_B1268 putative sensor signal transduction histidine kinase; histidine kinase complement(2733888..2735327) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285988 YP_002480845.1 CDS Ddes_2272 NC_011883.1 2735324 2736046 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA4468 DNA-binding response regulator OmpR; winged helix family two component transcriptional regulator complement(2735324..2736046) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285989 YP_002480846.1 CDS asnC NC_011883.1 2736247 2737611 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2736247..2737611 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285990 YP_002480847.1 CDS Ddes_2274 NC_011883.1 2738098 2739144 D KEGG: dvl:Dvul_0328 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase 2738098..2739144 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285991 YP_002480848.1 CDS Ddes_2275 NC_011883.1 2739210 2740172 D PFAM: aminotransferase class IV; KEGG: dvl:Dvul_0329 aminotransferase, class IV; class IV aminotransferase 2739210..2740172 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285992 YP_002480849.1 CDS Ddes_2276 NC_011883.1 2740172 2741515 D PFAM: glycosyl transferase group 1; KEGG: lip:LI0948 glycosyltransferase; group 1 glycosyl transferase 2740172..2741515 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285993 YP_002480850.1 CDS Ddes_2277 NC_011883.1 2741576 2742487 D PFAM: PP-loop domain protein; KEGG: dvl:Dvul_2830 PP-loop domain-containing protein; PP-loop domain-containing protein 2741576..2742487 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285994 YP_002480851.1 CDS Ddes_2278 NC_011883.1 2743146 2743802 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: dvl:Dvul_0082 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2743146..2743802 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285996 YP_002480852.1 CDS Ddes_2279 NC_011883.1 2743988 2744680 D PFAM: beta-lactamase domain protein; KEGG: dvu:DVU3308 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 2743988..2744680 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285997 YP_002480853.1 CDS Ddes_2280 NC_011883.1 2744821 2745708 R PFAM: flagellin domain protein; KEGG: dvl:Dvul_0790 flagellin domain-containing protein; flagellin domain-containing protein complement(2744821..2745708) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285998 YP_002480854.1 CDS Ddes_2281 NC_011883.1 2746158 2746679 R PFAM: heat shock protein Hsp20; KEGG: lpn:lpg2192 small HspC2 heat shock protein; heat shock protein Hsp20 complement(2746158..2746679) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285999 YP_002480855.1 CDS Ddes_2282 NC_011883.1 2747091 2747978 D PFAM: flagellin domain protein; KEGG: dvl:Dvul_0790 flagellin domain-containing protein; flagellin domain-containing protein 2747091..2747978 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286000 YP_002480856.1 CDS Ddes_2283 NC_011883.1 2748319 2749647 R KEGG: dvu:DVU3151 putative tRNA modifying protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG complement(2748319..2749647) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286001 YP_002480857.1 CDS Ddes_2284 NC_011883.1 2749785 2752034 D KEGG: cdf:CD0522 putative signaling protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase 2749785..2752034 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286002 YP_002480858.1 CDS Ddes_2285 NC_011883.1 2752264 2752833 R KEGG: dvu:DVU2447 hypothetical protein; hypothetical protein complement(2752264..2752833) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286003 YP_002480859.1 CDS panC NC_011883.1 2753037 2753885 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2753037..2753885 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286004 YP_002480860.1 CDS Ddes_2287 NC_011883.1 2753925 2755097 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2753925..2755097 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286005 YP_002480861.1 CDS Ddes_2288 NC_011883.1 2755495 2756589 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2755495..2756589 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286006 YP_002480862.1 CDS Ddes_2289 NC_011883.1 2756605 2758854 D KEGG: dvl:Dvul_2089 RecD/TraA family helicase; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; helicase, RecD/TraA family 2756605..2758854 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286007 YP_002480863.1 CDS Ddes_2290 NC_011883.1 2759016 2759687 R TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: asa:ASA_1293 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2759016..2759687) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286008 YP_002480864.1 CDS Ddes_2291 NC_011883.1 2759988 2760506 D hypothetical protein 2759988..2760506 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286009 YP_002480865.1 CDS Ddes_2292 NC_011883.1 2760383 2760958 R PFAM: AMMECR1 domain protein; KEGG: dvl:Dvul_2231 AMMECR1 domain-containing protein; AMMECR1 domain-containing protein complement(2760383..2760958) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286010 YP_002480866.1 CDS Ddes_2293 NC_011883.1 2761230 2761466 R PFAM: Dissimilatory sulfite reductase D; KEGG: dvl:Dvul_2530 dissimilatory sulfite reductase B; dissimilatory sulfite reductase D complement(2761230..2761466) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286011 YP_002480867.1 CDS Ddes_2294 NC_011883.1 2761523 2762668 R KEGG: dvl:Dvul_2531 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type beta subunit complement(2761523..2762668) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286012 YP_002480868.1 CDS Ddes_2295 NC_011883.1 2762687 2764000 R KEGG: dvl:Dvul_2532 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit complement(2762687..2764000) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286013 YP_002480869.1 CDS Ddes_2296 NC_011883.1 2764559 2764828 D KEGG: dvl:Dvul_2533 hypothetical protein; hypothetical protein 2764559..2764828 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286014 YP_002480870.1 CDS Ddes_2297 NC_011883.1 2764825 2765841 D KEGG: dvl:Dvul_2535 hypothetical protein; hypothetical protein 2764825..2765841 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286015 YP_002480871.1 CDS Ddes_2298 NC_011883.1 2765838 2766554 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: dvl:Dvul_2537 rare lipoprotein A; rare lipoprotein A 2765838..2766554 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286016 YP_002480872.1 CDS prfA NC_011883.1 2766784 2767854 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2766784..2767854) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286017 YP_002480873.1 CDS Ddes_2300 NC_011883.1 2768068 2768982 R PFAM: protein of unknown function DUF1385; KEGG: dvl:Dvul_0452 putative lipoprotein; hypothetical protein complement(2768068..2768982) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286018 YP_002480874.1 CDS rpmE NC_011883.1 2769125 2769337 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(2769125..2769337) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286019 YP_002480875.1 CDS Ddes_2302 NC_011883.1 2769592 2770542 D TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: dvl:Dvul_0454 hemolysin A; hemolysin A 2769592..2770542 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286020 YP_002480876.1 CDS Ddes_2303 NC_011883.1 2770655 2770774 D hypothetical protein 2770655..2770774 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286021 YP_002480877.1 CDS Ddes_2304 NC_011883.1 2770771 2771115 R KEGG: dvl:Dvul_2213 hypothetical protein; hypothetical protein complement(2770771..2771115) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286022 YP_002480878.1 CDS Ddes_2305 NC_011883.1 2771120 2772832 R KEGG: dvl:Dvul_2211 tetratricopeptide domain-containing protein; hypothetical protein complement(2771120..2772832) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286023 YP_002480879.1 CDS Ddes_2306 NC_011883.1 2772900 2773487 R KEGG: dvl:Dvul_2210 putative lipoprotein; putative lipoprotein complement(2772900..2773487) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286024 YP_002480880.1 CDS Ddes_2307 NC_011883.1 2773854 2775128 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2773854..2775128 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286025 YP_002480881.1 CDS Ddes_2308 NC_011883.1 2775333 2775623 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nmc:NMC1495 hypothetical protein; antibiotic biosynthesis monooxygenase complement(2775333..2775623) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286026 YP_002480882.1 CDS Ddes_2309 NC_011883.1 2775620 2777041 R KEGG: ngk:NGK_2503 SdaA; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(2775620..2777041) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286027 YP_002480883.1 CDS Ddes_2310 NC_011883.1 2777351 2777776 R KEGG: drm:Dred_2420 C_GCAxxG_C_C family protein; hypothetical protein complement(2777351..2777776) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286028 YP_002480884.1 CDS Ddes_2311 NC_011883.1 2777778 2779823 R KEGG: dvl:Dvul_2646 hypothetical protein; hypothetical protein complement(2777778..2779823) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286029 YP_002480885.1 CDS Ddes_2312 NC_011883.1 2779820 2780956 R KEGG: dvl:Dvul_2877 eIF-2B alpha/beta/delta-related uncharacterized proteins; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family complement(2779820..2780956) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286030 YP_002480886.1 CDS Ddes_2313 NC_011883.1 2781319 2782500 D PFAM: aminotransferase class I and II; KEGG: dvl:Dvul_2093 aminotransferase, class I and II; class I and II aminotransferase 2781319..2782500 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286031 YP_002480887.1 CDS Ddes_2314 NC_011883.1 2782899 2784098 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2782899..2784098 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286032 YP_002480888.1 CDS Ddes_2315 NC_011883.1 2784095 2785288 D KEGG: mba:Mbar_A2522 hypothetical protein; hypothetical protein 2784095..2785288 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286033 YP_002480889.1 CDS Ddes_2316 NC_011883.1 2785305 2785721 D PFAM: protein of unknown function UPF0047; KEGG: dvl:Dvul_2442 hypothetical protein; hypothetical protein 2785305..2785721 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286034 YP_002480890.1 CDS Ddes_2317 NC_011883.1 2785978 2787258 D PFAM: UMUC domain protein DNA-repair protein; KEGG: dvl:Dvul_2890 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2785978..2787258 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286035 YP_002480891.1 CDS Ddes_2318 NC_011883.1 2787615 2788091 R PFAM: protein of unknown function DUF55; KEGG: dvl:Dvul_0815 hypothetical protein; hypothetical protein complement(2787615..2788091) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286036 YP_002480892.1 CDS Ddes_2319 NC_011883.1 2788254 2790473 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: dvl:Dvul_2458 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL complement(2788254..2790473) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286037 YP_002480893.1 CDS Ddes_2320 NC_011883.1 2790633 2790938 D KEGG: dvl:Dvul_2455 hypothetical protein; hypothetical protein 2790633..2790938 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286038 YP_002480894.1 CDS Ddes_2322 NC_011883.1 2791398 2791895 R KEGG: dvl:Dvul_2454 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(2791398..2791895) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286040 YP_002480895.1 CDS Ddes_2323 NC_011883.1 2792038 2793327 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(2792038..2793327) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286041 YP_002480896.1 CDS Ddes_2324 NC_011883.1 2793434 2795119 R PFAM: FG-GAP repeat protein; KEGG: dvl:Dvul_0197 hypothetical protein; FG-GAP repeat-containing protein complement(2793434..2795119) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286042 YP_002480897.1 CDS Ddes_2325 NC_011883.1 2795499 2796887 D PFAM: Fmu (Sun) domain protein; KEGG: dvu:DVU3189 NOL1/NOP2/sun family protein; Fmu (Sun) domain-containing protein 2795499..2796887 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286043 YP_002480898.1 CDS Ddes_2326 NC_011883.1 2797138 2800074 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: dvl:Dvul_0310 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(2797138..2800074) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286044 YP_002480899.1 CDS Ddes_2327 NC_011883.1 2800383 2800952 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dvl:Dvul_0311 cupin 2 domain-containing protein; XRE family transcriptional regulator 2800383..2800952 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286045 YP_002480900.1 CDS Ddes_2328 NC_011883.1 2801190 2802875 D PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_0312 acyl-CoA synthetase; AMP-binding domain-containing protein 2801190..2802875 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286046 YP_002480901.1 CDS Ddes_2329 NC_011883.1 2803101 2804252 D TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dvu:DVU3149 signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 36K type 2803101..2804252 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286047 YP_002480902.1 CDS Ddes_2330 NC_011883.1 2804638 2805114 D hypothetical protein 2804638..2805114 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286048 YP_002480903.1 CDS Ddes_2331 NC_011883.1 2805214 2805699 D hypothetical protein 2805214..2805699 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286049 YP_002480904.1 CDS Ddes_2332 NC_011883.1 2805877 2806851 R KEGG: sse:Ssed_2182 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(2805877..2806851) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286050 YP_002480905.1 CDS rpsA NC_011883.1 2807099 2808811 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2807099..2808811) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286051 YP_002480906.1 CDS Ddes_2334 NC_011883.1 2809231 2810145 D PFAM: anaerobic cobalt chelatase; KEGG: dvl:Dvul_2310 anaerobic cobalt chelatase; anaerobic cobalt chelatase 2809231..2810145 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286052 YP_002480907.1 CDS Ddes_2335 NC_011883.1 2810466 2811257 D PFAM: YheO domain protein; KEGG: drm:Dred_0613 YheO domain-containing protein; YheO domain-containing protein 2810466..2811257 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286053 YP_002480908.1 CDS Ddes_2336 NC_011883.1 2811701 2812300 R hypothetical protein complement(2811701..2812300) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286054 YP_002480909.1 CDS Ddes_2337 NC_011883.1 2812506 2815613 R KEGG: sml:Smlt1009 putative glycine-rich autotransporter protein; hypothetical protein complement(2812506..2815613) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286055 YP_002480910.1 CDS Ddes_2338 NC_011883.1 2816061 2817341 R KEGG: dvl:Dvul_2452 phenylacetate--CoA ligase; phenylacetate--CoA ligase complement(2816061..2817341) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286056 YP_002480911.1 CDS Ddes_2339 NC_011883.1 2817713 2818771 R PFAM: Asparaginase/glutaminase; KEGG: bxe:Bxe_A2464 L-asparaginase, type II; asparaginase complement(2817713..2818771) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286057 YP_002480912.1 CDS Ddes_2340 NC_011883.1 2818967 2819473 R PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_2705 probable acetyltransferase; N-acetyltransferase GCN5 complement(2818967..2819473) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286058 YP_002480913.1 CDS Ddes_2341 NC_011883.1 2819657 2820910 D PFAM: major facilitator superfamily MFS_1; KEGG: msu:MS0785 ProP protein; major facilitator superfamily protein 2819657..2820910 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286059 YP_002480914.1 CDS Ddes_2342 NC_011883.1 2821399 2822976 R PFAM: BCCT transporter; KEGG: amc:MADE_00106 putative choline-glycine betaine transporter; BCCT transporter complement(2821399..2822976) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286060 YP_002480915.1 CDS Ddes_2343 NC_011883.1 2823378 2825264 D PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dsy:DSY4968 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 2823378..2825264 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286061 YP_002480916.1 CDS Ddes_2344 NC_011883.1 2825350 2825901 D hypothetical protein 2825350..2825901 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286062 YP_002480917.1 CDS Ddes_2345 NC_011883.1 2826042 2827502 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; AAA ATPase; KEGG: sfu:Sfum_1160 sigma54 specific transcriptional regulator, fis family; Fis family sigma-54 specific transcriptional regulator complement(2826042..2827502) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286063 YP_002480918.1 CDS Ddes_2346 NC_011883.1 2827684 2828121 D hypothetical protein 2827684..2828121 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286064 YP_002480919.1 CDS Ddes_2347 NC_011883.1 2828124 2829551 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dps:DP0303 dihydrolipoamide dehydrogenase, E3 component; dihydrolipoamide dehydrogenase 2828124..2829551 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286065 YP_002480920.1 CDS Ddes_2348 NC_011883.1 2829612 2830016 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: ank:AnaeK_2621 glycine cleavage system H protein; glycine cleavage system H protein 2829612..2830016 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286066 YP_002480921.1 CDS Ddes_2349 NC_011883.1 2830036 2831064 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pca:Pcar_0941 hypothetical protein; hypothetical protein 2830036..2831064 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286067 YP_002480922.1 CDS Ddes_2350 NC_011883.1 2831099 2831374 D hypothetical protein 2831099..2831374 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286068 YP_002480923.1 CDS Ddes_2351 NC_011883.1 2831935 2832735 D KEGG: pst:PSPTO_4754 hypothetical protein; hypothetical protein 2831935..2832735 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286070 YP_002480924.1 CDS Ddes_2352 NC_011883.1 2832835 2834619 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: cyt:cce_1086 RNA-directed DNA polymerase; RNA-directed DNA polymerase complement(2832835..2834619) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286071 YP_002480925.1 CDS Ddes_2353 NC_011883.1 2834862 2835116 R KEGG: oan:Oant_0679 hypothetical protein; hypothetical protein complement(2834862..2835116) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286072 YP_002480926.1 CDS Ddes_2354 NC_011883.1 2835237 2836025 R PFAM: Integrase catalytic region; KEGG: dvl:Dvul_2602 integrase catalytic subunit; integrase catalytic subunit complement(2835237..2836025) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286073 YP_002480927.1 CDS Ddes_2355 NC_011883.1 2836082 2836348 R PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU2011 ISD1, transposase OrfA; transposase IS3/IS911 family protein complement(2836082..2836348) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286074 YP_002480928.1 CDS Ddes_2356 NC_011883.1 2836488 2836670 R KEGG: pph:Ppha_1845 transcriptional regulator, XRE family; hypothetical protein complement(2836488..2836670) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286075 YP_002480929.1 CDS Ddes_2357 NC_011883.1 2836832 2837947 D PFAM: filamentation induced by cAMP protein Fic; KEGG: sal:Sala_2616 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2836832..2837947 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286076 YP_002480930.1 CDS Ddes_2358 NC_011883.1 2838186 2839301 R PFAM: filamentation induced by cAMP protein Fic; KEGG: pca:Pcar_2123 hypothetical protein; filamentation induced by cAMP protein fic complement(2838186..2839301) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286077 YP_002480931.1 CDS Ddes_2359 NC_011883.1 2839403 2840599 R PFAM: integrase family protein; KEGG: dvl:Dvul_2564 phage integrase family protein; integrase family protein complement(2839403..2840599) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286078 YP_002480932.1 CDS Ddes_2360 NC_011883.1 2841201 2842619 R PFAM: phospholipase D/Transphosphatidylase; KEGG: dvl:Dvul_2510 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(2841201..2842619) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286079 YP_002480933.1 CDS Ddes_2361 NC_011883.1 2842678 2847873 R PFAM: ATP-binding region ATPase domain protein; KEGG: dvu:DVU2580 response regulator; ATP-binding protein complement(2842678..2847873) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286080 YP_002480934.1 CDS Ddes_2362 NC_011883.1 2848097 2848867 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_0668 TPR repeat-containing protein; hypothetical protein complement(2848097..2848867) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286081 YP_002480935.1 CDS Ddes_2363 NC_011883.1 2849400 2850050 R KEGG: dvu:DVU1045 hypothetical protein; hypothetical protein complement(2849400..2850050) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286082 YP_002480936.1 CDS Ddes_2364 NC_011883.1 2850043 2850180 R KEGG: dvl:Dvul_1947 hypothetical protein; hypothetical protein complement(2850043..2850180) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286083 YP_002480937.1 CDS Ddes_2365 NC_011883.1 2850245 2850937 R PFAM: cytochrome c assembly protein; KEGG: dvl:Dvul_1946 cytochrome c assembly protein; cytochrome c assembly protein complement(2850245..2850937) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286084 YP_002480938.1 CDS Ddes_2366 NC_011883.1 2850937 2851614 R PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dvl:Dvul_1945 cytochrome c-type biogenesis protein CcmB; cytochrome c-type biogenesis protein CcmB complement(2850937..2851614) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286085 YP_002480939.1 CDS Ddes_2367 NC_011883.1 2851602 2852312 R KEGG: dvl:Dvul_1944 ABC transporter related; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA complement(2851602..2852312) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286086 YP_002480940.1 CDS Ddes_2368 NC_011883.1 2852331 2854310 R PFAM: cytochrome c assembly protein; KEGG: dvl:Dvul_1943 cytochrome c assembly protein; cytochrome c assembly protein complement(2852331..2854310) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286087 YP_002480941.1 CDS Ddes_2369 NC_011883.1 2854436 2854849 R KEGG: dvl:Dvul_1942 cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE complement(2854436..2854849) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286088 YP_002480942.1 CDS Ddes_2370 NC_011883.1 2855428 2857092 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dps:DP0230 hypothetical protein; diguanylate cyclase complement(2855428..2857092) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286089 YP_002480943.1 CDS Ddes_2371 NC_011883.1 2857321 2859147 R TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: dvl:Dvul_0229 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glucosamine/fructose-6-phosphate aminotransferase complement(2857321..2859147) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286090 YP_002480944.1 CDS Ddes_2372 NC_011883.1 2859312 2861231 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dvl:Dvul_1929 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2859312..2861231) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286091 YP_002480945.1 CDS Ddes_2373 NC_011883.1 2861463 2863097 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sus:Acid_7913 NifA subfamily transcriptional regulator; Fis family sigma-54 specific transcriptional regulator complement(2861463..2863097) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286092 YP_002480946.1 CDS Ddes_2374 NC_011883.1 2863436 2863720 D PFAM: SAF domain protein; KEGG: bpt:Bpet0415 hypothetical protein; SAF domain-containing protein 2863436..2863720 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286093 YP_002480947.1 CDS Ddes_2375 NC_011883.1 2863725 2864885 D PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase; altronate dehydratase 2863725..2864885 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286094 YP_002480948.1 CDS Ddes_2376 NC_011883.1 2864963 2865922 D PFAM: conserved hypothetical protein; KEGG: dsy:DSY3249 hypothetical protein; hypothetical protein 2864963..2865922 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286095 YP_002480949.1 CDS Ddes_2377 NC_011883.1 2865975 2867537 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein; hypothetical protein 2865975..2867537 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286096 YP_002480950.1 CDS Ddes_2378 NC_011883.1 2867530 2867988 D KEGG: dsy:DSY3247 hypothetical protein; hypothetical protein 2867530..2867988 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286097 YP_002480951.1 CDS Ddes_2379 NC_011883.1 2868033 2869313 D KEGG: mta:Moth_1926 hypothetical protein; hypothetical protein 2868033..2869313 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286098 YP_002480952.1 CDS Ddes_2380 NC_011883.1 2869429 2870106 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsq:Rsph17025_3165 hypothetical protein; dimethylmenaquinone methyltransferase 2869429..2870106 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286099 YP_002480953.1 CDS Ddes_2381 NC_011883.1 2870814 2872331 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvl:Dvul_1931 two component, sigma54 specific, Fis family transcriptional regulator; Fis family two component sigma-54 specific transcriptional regulator complement(2870814..2872331) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286100 YP_002480954.1 CDS Ddes_2382 NC_011883.1 2872525 2873313 D PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dvl:Dvul_1932 hypothetical protein; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase 2872525..2873313 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286101 Ddes_R0001 tRNA Ddes_R0001 NC_011883.1 114728 114817 R tRNA-Ser complement(114728..114817) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283738 Ddes_R0002 tRNA Ddes_R0002 NC_011883.1 157572 157648 R tRNA-Asp complement(157572..157648) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283775 Ddes_R0003 tRNA Ddes_R0003 NC_011883.1 157659 157734 R tRNA-Val complement(157659..157734) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283776 Ddes_R0004 tRNA Ddes_R0004 NC_011883.1 309883 309958 R tRNA-Lys complement(309883..309958) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283921 Ddes_R0005 tRNA Ddes_R0005 NC_011883.1 312303 312397 D tRNA-Ser 312303..312397 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283923 Ddes_R0006 tRNA Ddes_R0006 NC_011883.1 389985 390060 R tRNA-Phe complement(389985..390060) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7283974 Ddes_R0008 tRNA Ddes_R0008 NC_011883.1 460780 460856 D tRNA-Ile 460780..460856 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284039 Ddes_R0009 tRNA Ddes_R0009 NC_011883.1 460879 460954 D tRNA-Ala 460879..460954 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284040 Ddes_R0013 tRNA Ddes_R0013 NC_011883.1 480778 480864 D tRNA-Leu 480778..480864 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284058 Ddes_R0014 tRNA Ddes_R0014 NC_011883.1 531020 531113 R tRNA-Ser complement(531020..531113) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284103 Ddes_R0015 tRNA Ddes_R0015 NC_011883.1 600648 600724 R tRNA-Val complement(600648..600724) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284156 Ddes_R0016 tRNA Ddes_R0016 NC_011883.1 604785 604870 R tRNA-Leu complement(604785..604870) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284162 Ddes_R0017 tRNA Ddes_R0017 NC_011883.1 651248 651323 D tRNA-Ala 651248..651323 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284207 Ddes_R0018 tRNA Ddes_R0018 NC_011883.1 676246 676320 R tRNA-Gly complement(676246..676320) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284227 Ddes_R0019 tRNA Ddes_R0019 NC_011883.1 676326 676400 R tRNA-Gly complement(676326..676400) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284228 Ddes_R0020 tRNA Ddes_R0020 NC_011883.1 676435 676508 R tRNA-Cys complement(676435..676508) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284229 Ddes_R0021 tRNA Ddes_R0021 NC_011883.1 676520 676594 R tRNA-Gly complement(676520..676594) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284230 Ddes_R0022 tRNA Ddes_R0022 NC_011883.1 790606 790681 R tRNA-Thr complement(790606..790681) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284322 Ddes_R0023 tRNA Ddes_R0023 NC_011883.1 819209 819292 D tRNA-Leu 819209..819292 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284363 Ddes_R0024 tRNA Ddes_R0024 NC_011883.1 925463 925538 R tRNA-Asn complement(925463..925538) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284464 Ddes_R0026 tRNA Ddes_R0026 NC_011883.1 1069286 1069362 D tRNA-Arg 1069286..1069362 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284594 Ddes_R0027 tRNA Ddes_R0027 NC_011883.1 1085756 1085832 R tRNA-Glu complement(1085756..1085832) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284607 Ddes_R0028 tRNA Ddes_R0028 NC_011883.1 1085846 1085920 R tRNA-Gln complement(1085846..1085920) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284608 Ddes_R0029 tRNA Ddes_R0029 NC_011883.1 1092235 1092319 R tRNA-Leu complement(1092235..1092319) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284617 Ddes_R0030 tRNA Ddes_R0030 NC_011883.1 1194358 1194433 R tRNA-Lys complement(1194358..1194433) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284701 Ddes_R0031 tRNA Ddes_R0031 NC_011883.1 1228397 1228488 R tRNA-Ser complement(1228397..1228488) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284728 Ddes_R0033 tRNA Ddes_R0033 NC_011883.1 1467748 1467824 D tRNA-Arg 1467748..1467824 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284932 Ddes_R0035 tRNA Ddes_R0035 NC_011883.1 1485426 1485502 D tRNA-Glu 1485426..1485502 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284947 Ddes_R0039 tRNA Ddes_R0039 NC_011883.1 1490371 1490446 R tRNA-Ala complement(1490371..1490446) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284953 Ddes_R0040 tRNA Ddes_R0040 NC_011883.1 1490469 1490545 R tRNA-Ile complement(1490469..1490545) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284954 Ddes_R0042 tRNA Ddes_R0042 NC_011883.1 1572846 1572922 D tRNA-Pro 1572846..1572922 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285014 Ddes_R0043 tRNA Ddes_R0043 NC_011883.1 1617631 1617717 R tRNA-Leu complement(1617631..1617717) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285040 Ddes_R0044 tRNA Ddes_R0044 NC_011883.1 1648845 1648922 R tRNA-Pro complement(1648845..1648922) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285071 Ddes_R0045 tRNA Ddes_R0045 NC_011883.1 1696198 1696274 R tRNA-Met complement(1696198..1696274) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285113 Ddes_R0046 tRNA Ddes_R0046 NC_011883.1 1738928 1739002 D tRNA-Gln 1738928..1739002 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285147 Ddes_R0047 tRNA Ddes_R0047 NC_011883.1 1746878 1746953 D tRNA-Val 1746878..1746953 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285156 Ddes_R0048 tRNA Ddes_R0048 NC_011883.1 1922522 1922597 R tRNA-Glu complement(1922522..1922597) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285297 Ddes_R0049 tRNA Ddes_R0049 NC_011883.1 1955253 1955328 D tRNA-Thr 1955253..1955328 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285327 Ddes_R0050 tRNA Ddes_R0050 NC_011883.1 1955379 1955464 D tRNA-Tyr 1955379..1955464 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285328 Ddes_R0051 tRNA Ddes_R0051 NC_011883.1 1955565 1955640 D tRNA-Gly 1955565..1955640 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285329 Ddes_R0052 tRNA Ddes_R0052 NC_011883.1 1957243 1957319 D tRNA-Trp 1957243..1957319 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285332 Ddes_R0053 tRNA Ddes_R0053 NC_011883.1 2015432 2015508 D tRNA-Arg 2015432..2015508 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285380 Ddes_R0057 tRNA Ddes_R0057 NC_011883.1 2041168 2041243 R tRNA-Ala complement(2041168..2041243) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285399 Ddes_R0058 tRNA Ddes_R0058 NC_011883.1 2041266 2041342 R tRNA-Ile complement(2041266..2041342) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285400 Ddes_R0061 tRNA Ddes_R0061 NC_011883.1 2078464 2078553 D tRNA-Sec 2078464..2078553 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285429 Ddes_R0062 tRNA Ddes_R0062 NC_011883.1 2139154 2139229 D tRNA-Thr 2139154..2139229 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285483 Ddes_R0063 tRNA Ddes_R0063 NC_011883.1 2226606 2226681 D tRNA-His 2226606..2226681 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285559 Ddes_R0064 tRNA Ddes_R0064 NC_011883.1 2227119 2227195 D tRNA-Pro 2227119..2227195 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285560 Ddes_R0065 tRNA Ddes_R0065 NC_011883.1 2317700 2317775 D tRNA-Met 2317700..2317775 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285639 Ddes_R0066 tRNA Ddes_R0066 NC_011883.1 2704507 2704582 R tRNA-Ala complement(2704507..2704582) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285961 Ddes_R0067 tRNA Ddes_R0067 NC_011883.1 2742846 2742922 R tRNA-Arg complement(2742846..2742922) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285995 Ddes_R0068 tRNA Ddes_R0068 NC_011883.1 2831659 2831735 D tRNA-Met 2831659..2831735 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7286069 Ddes_R0007 rRNA Ddes_R0007 NC_011883.1 459161 460698 D 16S ribosomal RNA 459161..460698 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284038 Ddes_R0010 rRNA Ddes_R0010 NC_011883.1 461101 464031 D 23S ribosomal RNA 461101..464031 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284041 Ddes_R0011 rRNA Ddes_R0011 NC_011883.1 464077 464191 D 5S ribosomal RNA 464077..464191 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284042 Ddes_R0012 rRNA Ddes_R0012 NC_011883.1 464079 464193 D 5S ribosomal RNA 464079..464193 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284043 Ddes_R0036 rRNA Ddes_R0036 NC_011883.1 1487132 1487246 R 5S ribosomal RNA complement(1487132..1487246) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284950 Ddes_R0037 rRNA Ddes_R0037 NC_011883.1 1487134 1487248 R 5S ribosomal RNA complement(1487134..1487248) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284951 Ddes_R0038 rRNA Ddes_R0038 NC_011883.1 1487294 1490224 R 23S ribosomal RNA complement(1487294..1490224) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284952 Ddes_R0041 rRNA Ddes_R0041 NC_011883.1 1490627 1492164 R 16S ribosomal RNA complement(1490627..1492164) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7284955 Ddes_R0054 rRNA Ddes_R0054 NC_011883.1 2037929 2038043 R 5S ribosomal RNA complement(2037929..2038043) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285396 Ddes_R0055 rRNA Ddes_R0055 NC_011883.1 2037931 2038045 R 5S ribosomal RNA complement(2037931..2038045) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285397 Ddes_R0056 rRNA Ddes_R0056 NC_011883.1 2038091 2041021 R 23S ribosomal RNA complement(2038091..2041021) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285398 Ddes_R0059 rRNA Ddes_R0059 NC_011883.1 2041424 2042961 R 16S ribosomal RNA complement(2041424..2042961) Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 7285401